BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043847
(325 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FGW0|FLA20_ARATH Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis
thaliana GN=FLA20 PE=3 SV=1
Length = 424
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 120/349 (34%), Positives = 183/349 (52%), Gaps = 44/349 (12%)
Query: 1 MAAKLVISLTLLSLFSLSYPLPDNS---VSDAVEILSNSGYLSMALTLEFGSKFLT-PPS 56
MA+KL+ + L+ F L L S VS AVE+LS+SGYLSM LTL+ ++ L
Sbjct: 42 MASKLLTTFFLI-FFVLDIDLVATSMTSVSSAVEVLSDSGYLSMGLTLKLANQDLNLEDW 100
Query: 57 PSLTIFSPSDSAFASFGQPSLALLQLHFSPLSFPSTFMKTLPYHAKIPTMSPNHTLIVTS 116
LT+F+PSD +F+ FGQPSL ++ SP P ++ LP AKIPT+ N++L VT+
Sbjct: 101 QELTLFAPSDQSFSKFGQPSLLDMKYQLSPTRLPGETLRNLPNGAKIPTLRSNYSLTVTN 160
Query: 117 LPS-DDQVSLNGVKINQPEIYDDGSLRIFGIETFLDPDYSV------------------- 156
+ S+N V + ++DDG + I+G + F +
Sbjct: 161 SSRFGGKTSINNVVVQDSPVFDDGYVVIYGSDEFFTSPTKISDDSSSSSSIPSTTSSTGS 220
Query: 157 -----SESQDGADPDLTLGQSVECLESVRGSEMN----FDDAVRYLTTEGYNVMASFLQL 207
S +Q P++ S L + R +N F+ A R L + G+ ++A+FL L
Sbjct: 221 IPIPSSATQTPPSPNIA-SDSTRNLPN-RSKPVNRFNIFESASRLLMSRGFVIIATFLAL 278
Query: 208 QLVGFKDQT----VVLTVFAPPDEAFQGYFGNFSEYSSIFLRHVVPCKISYQDLIDF-DQ 262
QL +D T +TVFAP DEA FS+Y +IF HVV + ++DL F +
Sbjct: 279 QL---EDNTSGNDTKITVFAPIDEAIPNPTTKFSDYVTIFRGHVVSQLLLWKDLQKFAKE 335
Query: 263 GTVLPTFLEGFKINVTKSLKDLYLNNVRVNDPSLYLNDWMFIHGVEKIV 311
G++L T L+G++I ++ S L LN V + P LY+NDW+ +HG +++
Sbjct: 336 GSILQTVLKGYEIEISLSGDILLLNGVPLIYPDLYVNDWIAVHGFNQMI 384
>sp|Q9FL53|FLA21_ARATH Fasciclin-like arabinogalactan protein 21 OS=Arabidopsis thaliana
GN=FLA21 PE=2 SV=1
Length = 353
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 188 DAVRYLTTEGYNVMASFLQLQLVGFKDQTVVLTVFAPPDEAFQGYFGNFSEYSSIFLR-- 245
+A L + +A+ L + F + T+FA D +F N S +FL+
Sbjct: 51 NASNTLRQSNFKAIATLLHISPEIFLSSSPNTTLFAIEDASF----FNTSSLHPLFLKQL 106
Query: 246 ---HVVPCKISYQDLIDFDQGTVLPTFLEGFKIN---VTKSLKDLYLNNVRVNDPSLYLN 299
H +P +S DL+ QGT LPT L + V + + +N+VR+ P ++L
Sbjct: 107 LHYHTLPLMLSMDDLLKKPQGTCLPTLLHHKSVQISTVNQESRTAEVNHVRITHPDMFLG 166
Query: 300 DWMFIHGV 307
D + IHGV
Sbjct: 167 DSLVIHGV 174
Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 63/306 (20%), Positives = 122/306 (39%), Gaps = 34/306 (11%)
Query: 28 DAVEILSNSGYLSMALTLEFGSKFLTPPSPSLTIFSPSDSAFASFGQPSL------ALLQ 81
+A L S + ++A L + SP+ T+F+ D++F F SL LL
Sbjct: 51 NASNTLRQSNFKAIATLLHISPEIFLSSSPNTTLFAIEDASF--FNTSSLHPLFLKQLLH 108
Query: 82 LHFSPLSFPSTFMKTLPYHAKIPTMSPNHTLIVTSLPSDDQVS-LNGVKINQPEIYDDGS 140
H PL + P +PT+ + ++ ++++ + + + +N V+I P+++ S
Sbjct: 109 YHTLPLMLSMDDLLKKPQGTCLPTLLHHKSVQISTVNQESRTAEVNHVRITHPDMFLGDS 168
Query: 141 LRIFGIETFLDP-----DYSVSESQDGADPDLTLGQSVECLESVRGSEMNFDDAVRYLTT 195
L I G+ P D+ + +D + E S+ + + V+ L++
Sbjct: 169 LVIHGVIGPFSPLQPHSDHLIHTPLCQSDTTNKTSNNEEVPVSIDWTRI-----VQLLSS 223
Query: 196 EGYNVMASFLQLQLVGF-------KDQTVVLTVFAPPDEAFQGYFGNFSEYSSIFLRHVV 248
G+ A L L K+ T V T+ A P+ F + H++
Sbjct: 224 NGFVPFAIGLHSVLNRIVNDHNHHKNLTGV-TILATPNLVSLSSASPF--LYEVVRHHIL 280
Query: 249 PCKISYQDLIDFDQGTVLPTF-----LEGFKINVTKSLKDLYLNNVRVNDPSLYLNDWMF 303
+++Y+D + T L + NV S D ++ V + DP ++ +
Sbjct: 281 VQRLTYKDFASMSDKATVKTLDPYQDLTITRRNVNSSGGDFMISGVEIVDPDMFSSSNFV 340
Query: 304 IHGVEK 309
IHG+
Sbjct: 341 IHGISH 346
>sp|Q5Q0H2|FLA19_ARATH Fasciclin-like arabinogalactan protein 19 OS=Arabidopsis thaliana
GN=FLA19 PE=2 SV=2
Length = 248
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 58 SLTIFSPSDSAFASFGQPS-----LALLQLHFSPLSFPSTFMKTLPYHAKIPTMSPNHTL 112
SLT+F+P+DS ++ L+LH PL + +++LP + +PT+ P+H L
Sbjct: 68 SLTLFAPTDSMLFDLDMTHSLPFYVSTLRLHSVPLRLSLSGLRSLPNSSSLPTLLPSHRL 127
Query: 113 IVTSL-PSDDQVSLNGVKINQPEIYDDGSLRIFGIETFL 150
++T S+D + L+GV++ P ++D + + G+ L
Sbjct: 128 LLTKHSSSNDSIFLDGVQLLIPGLFDGQHIAVHGLADLL 166
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 219 LTVFAPPDEAF--QGYFGNFSEYSSIFLRHVVPCKISYQDLIDFDQGTVLPTFLEGFKIN 276
LT+FAP D + Y S H VP ++S L + LPT L ++
Sbjct: 69 LTLFAPTDSMLFDLDMTHSLPFYVSTLRLHSVPLRLSLSGLRSLPNSSSLPTLLPSHRLL 128
Query: 277 VTK---SLKDLYLNNVRVNDPSLYLNDWMFIHGVEKIVPEYVPQS 318
+TK S ++L+ V++ P L+ + +HG+ ++P P S
Sbjct: 129 LTKHSSSNDSIFLDGVQLLIPGLFDGQHIAVHGLADLLPLTAPSS 173
>sp|P0DH64|Y4891_SELML FAS1 domain-containing protein SELMODRAFT_448915 OS=Selaginella
moellendorffii GN=SELMODRAFT_448915 PE=2 SV=1
Length = 260
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 190 VRYLTTEGYNVMASFLQ-LQ-LVGFKDQTVVLTVFAPPDEAFQGYFGNFSEYSSI--FLR 245
V + +G+ V A+ Q LQ L+ + T+ P + A G N S+ I
Sbjct: 76 VSNMIGQGFTVAAAVAQSLQTLIPIRS-----TLLIPSNNAIAGVDANLSQEDIINTLQY 130
Query: 246 HVVPCKISYQDLIDFDQGTVLPTFLEGFKINVT-KSLKDLYLNNVRVNDPSLYLN-DWMF 303
HV+ S++ L D G LPT L+G I VT S + LN V + P + + ++
Sbjct: 131 HVLTFPTSFEALSRNDVGAELPTMLQGEMITVTSNSPGNFTLNEVNITHPDVCSSTRFIA 190
Query: 304 IHGVEKIV 311
HG+++++
Sbjct: 191 CHGIDRVL 198
>sp|Q8K031|STAR8_MOUSE StAR-related lipid transfer protein 8 OS=Mus musculus GN=Stard8
PE=1 SV=2
Length = 1019
Score = 34.3 bits (77), Expect = 1.2, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 25/60 (41%)
Query: 49 SKFLTPPSPSLTIFSPSDSAFASFGQPSLALLQLHFSPLSFPSTFMKTLPYHAKIPTMSP 108
S L PPSPSL S +S SL + SP S + +P + P +SP
Sbjct: 50 SALLAPPSPSLLGTSSCESVLTELSAASLPAISASLSPESADQPLLGLVPSPSNQPFLSP 109
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,847,343
Number of Sequences: 539616
Number of extensions: 5058640
Number of successful extensions: 11696
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11677
Number of HSP's gapped (non-prelim): 20
length of query: 325
length of database: 191,569,459
effective HSP length: 118
effective length of query: 207
effective length of database: 127,894,771
effective search space: 26474217597
effective search space used: 26474217597
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)