Query 043847
Match_columns 325
No_of_seqs 184 out of 1413
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:51:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2335 Secreted and surface p 99.9 6.4E-24 1.4E-28 184.0 10.4 127 186-317 47-185 (187)
2 smart00554 FAS1 Four repeated 99.8 1.3E-20 2.8E-25 149.2 7.7 90 220-314 1-99 (99)
3 KOG1437 Fasciclin and related 99.8 3.4E-19 7.4E-24 181.2 16.8 249 25-316 372-644 (682)
4 PF02469 Fasciclin: Fasciclin 99.8 1.4E-19 3E-24 149.4 6.7 113 198-313 3-128 (128)
5 COG2335 Secreted and surface p 99.8 1.1E-18 2.4E-23 151.5 8.3 123 25-155 46-184 (187)
6 smart00554 FAS1 Four repeated 99.7 1.5E-17 3.3E-22 131.5 6.6 88 60-153 1-99 (99)
7 PF02469 Fasciclin: Fasciclin 99.7 3.9E-17 8.5E-22 134.6 5.2 110 38-152 3-128 (128)
8 KOG1437 Fasciclin and related 99.5 4.5E-14 9.7E-19 144.1 11.9 219 55-313 269-507 (682)
9 PF07172 GRP: Glycine rich pro 67.7 2.7 5.9E-05 33.2 1.1 23 1-23 1-25 (95)
10 PF15240 Pro-rich: Proline-ric 35.0 26 0.00057 30.8 1.9 24 4-27 1-24 (179)
11 PF13956 Ibs_toxin: Toxin Ibs, 24.6 42 0.00092 18.2 0.9 15 4-18 3-17 (19)
No 1
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=6.4e-24 Score=184.03 Aligned_cols=127 Identities=24% Similarity=0.304 Sum_probs=106.0
Q ss_pred HHHHHHHHhhc-ChHHHHHHHHH-hhccccCCCceeEEEeCCCHHHhccCC----------ChhhHHhhhcccccCCccc
Q 043847 186 FDDAVRYLTTE-GYNVMASFLQL-QLVGFKDQTVVLTVFAPPDEAFQGYFG----------NFSEYSSIFLRHVVPCKIS 253 (325)
Q Consensus 186 ~~~~~~~L~~~-gf~~~~~~L~~-~~~~l~~~~~~~TvFAPtd~AF~~l~~----------~~~~l~~iL~yHvVp~~~~ 253 (325)
-.++++..... .|+++..+++. .+-+.+..+||||||||+|+||++++. +...++++|.||||+|++.
T Consensus 47 ~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~~ 126 (187)
T COG2335 47 RADIVESAANNPSFTTLVAALKAAGLVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKIT 126 (187)
T ss_pred hhHHHHHHccCcchHHHHHHHHhhhhHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCccc
Confidence 35677776444 49999988854 456777778889999999999999863 4567889999999999999
Q ss_pred hhcccccCCCceeeeccCCcEEEEEEeCCeEEEeeEEEecCccccCCCeEEEEeCCccCCCCCC
Q 043847 254 YQDLIDFDQGTVLPTFLEGFKINVTKSLKDLYLNNVRVNDPSLYLNDWMFIHGVEKIVPEYVPQ 317 (325)
Q Consensus 254 ~~~L~~~~~g~~l~Tl~~g~~l~v~~~~~~v~vng~~V~~~di~~~~ngvIH~Id~VL~P~~~~ 317 (325)
.+++.+ ...+.|+ +|..++|...+++++||.++|+.+|+ ..+|||||+||+||+||...
T Consensus 127 ~~~l~~---~~~v~t~-~G~~~~i~~~~~~~~Vn~a~v~~~di-~a~NgvIhvID~Vl~Pp~~~ 185 (187)
T COG2335 127 AADLKS---SGSVKTV-QGADLKIKVTGGGVYVNDATVTIADI-NASNGVIHVIDKVLIPPMDL 185 (187)
T ss_pred HHHhhc---cccceee-cCceEEEEEcCCcEEEeeeEEEeccE-eccCcEEEEEeeeccCCCcc
Confidence 999875 2347776 89999999988889999999999995 57899999999999999753
No 2
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.83 E-value=1.3e-20 Score=149.16 Aligned_cols=90 Identities=33% Similarity=0.523 Sum_probs=77.9
Q ss_pred EEEeCCCHHHhccCCC------hh-hHHhhhcccccCCccchhcccccCCCceeeeccCCcEEEEEEeC--CeEEEeeEE
Q 043847 220 TVFAPPDEAFQGYFGN------FS-EYSSIFLRHVVPCKISYQDLIDFDQGTVLPTFLEGFKINVTKSL--KDLYLNNVR 290 (325)
Q Consensus 220 TvFAPtd~AF~~l~~~------~~-~l~~iL~yHvVp~~~~~~~L~~~~~g~~l~Tl~~g~~l~v~~~~--~~v~vng~~ 290 (325)
|+|||+|+||+++..+ .+ .++++|+||++|++++.++|.+ +..++|+ .|+.++++..+ +.+++|+++
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~---~~~~~Tl-~g~~l~v~~~~~~~~i~in~~~ 76 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLN---GGTLPTL-AGSKLRVTRSGDSGTVTVNGAR 76 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhcc---CCccccC-CCCEEEEEEeCCCCeEEEcceE
Confidence 8999999999988532 11 6789999999999999998864 6778997 69999998877 799999999
Q ss_pred EecCccccCCCeEEEEeCCccCCC
Q 043847 291 VNDPSLYLNDWMFIHGVEKIVPEY 314 (325)
Q Consensus 291 V~~~di~~~~ngvIH~Id~VL~P~ 314 (325)
|+.+|+. ++||+||+||+||+|+
T Consensus 77 v~~~di~-~~nGvih~Id~vL~P~ 99 (99)
T smart00554 77 IVEADIA-ATNGVVHVIDRVLLPP 99 (99)
T ss_pred EEECCEe-cCCeEEEEECceeCCC
Confidence 9999976 5689999999999996
No 3
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.81 E-value=3.4e-19 Score=181.18 Aligned_cols=249 Identities=16% Similarity=0.157 Sum_probs=162.5
Q ss_pred chhcHHHHHHhCCchhHHHHHhhcccc-CCCCCCCeEEEeeCcHHHhcCCC-Cc----HHHhhhcccCCccccccccCCC
Q 043847 25 SVSDAVEILSNSGYLSMALTLEFGSKF-LTPPSPSLTIFSPSDSAFASFGQ-PS----LALLQLHFSPLSFPSTFMKTLP 98 (325)
Q Consensus 25 ~~~ni~~iL~~~g~~s~~~~l~~~~~~-~l~~~~~~TvFAPtd~Af~~~~~-~~----l~lL~yHvv~g~~~~~~L~~~~ 98 (325)
+..++.++..+....++..++...+.. .+...+.+|+|+|+|+||++... .. .++|.||+++.+...+++...
T Consensus 372 ~~~~l~~La~e~~~st~~rlv~elgll~~L~~n~e~t~~lp~n~~fd~~~~~~~r~l~~qIL~~HII~~~~~~~~~y~~- 450 (682)
T KOG1437|consen 372 SLKNLMSLAREDEISTSMRLVAELGLLTALAPNDEATLLLPTNNLFDDLTPLESRRLAEQILYNHIIPEYLTSSSMYNG- 450 (682)
T ss_pred hHHHHHHHHhcccccHHHHHHHhccceEEEcCCCceEEeeehhhhccCCChhhhHHHHHHHHHHhCcchhhhhhhhhcc-
Confidence 356778878887777777766554433 34444559999999999998532 22 399999999999999998852
Q ss_pred CCCeeecccCCceEEEEEcCC-----CCeEEEcc-EEEecCccc-cCCCeEEEEeCCccCCCccccccCCCCCCCCccCC
Q 043847 99 YHAKIPTMSPNHTLIVTSLPS-----DDQVSLNG-VKINQPEIY-DDGSLRIFGIETFLDPDYSVSESQDGADPDLTLGQ 171 (325)
Q Consensus 99 ~g~~l~Tll~g~~l~vt~~~~-----~~~v~vng-~~I~~~di~-~~G~~vvH~Id~vL~P~~~~~~~~~~~~p~~~~~~ 171 (325)
++.++|+ .|..+..-.+.. ...+.++| +.|.+.|+. .|| ++|+||+|+.| ..
T Consensus 451 -~~~v~t~-g~~~l~~fv~r~~~s~~~t~i~~~~~~~Ii~aDi~~~nG--vvH~id~vl~p-~~---------------- 509 (682)
T KOG1437|consen 451 -QTTVRTL-GKNKLLYFVYRHSVSANVTDILIGNEACIIEADISVKNG--VVHIIDRVLDP-VS---------------- 509 (682)
T ss_pred -cceeecc-CCeEEEEEEecccccccceeeeccceeeEEecccceecC--ceEEeeEEcCc-cc----------------
Confidence 2366665 555554444321 11345555 467788985 688 99999999998 22
Q ss_pred chhhhhcccCCCCcHHHHHHHHhhcC-hHHHHHHHHHh-hc-cccCCCceeEEEeCCCHHHhccCC------ChhhHHhh
Q 043847 172 SVECLESVRGSEMNFDDAVRYLTTEG-YNVMASFLQLQ-LV-GFKDQTVVLTVFAPPDEAFQGYFG------NFSEYSSI 242 (325)
Q Consensus 172 p~~~~a~~~~~~~~~~~~~~~L~~~g-f~~~~~~L~~~-~~-~l~~~~~~~TvFAPtd~AF~~l~~------~~~~l~~i 242 (325)
.++.|++.+ ++.+..+++.. +. .+....+ +|+|+|||+||++... +...+.++
T Consensus 510 -----------------l~~~l~~d~r~s~~~~~le~~~l~e~l~~~~~-~t~fvPt~ka~~~~~~~~~~~~~~~~l~~~ 571 (682)
T KOG1437|consen 510 -----------------LMEDLKTDGRISGTVQGLEGVLLPEELTPEGN-YTLFVPTNKAWQKSTKDEKSLFHKKALQDF 571 (682)
T ss_pred -----------------HHHHHhhccchhhhHHhhhhcCChhhhccCCc-eEEEeecccccccCCcchhhcchHHHHHHH
Confidence 112222222 44444444332 22 3333344 9999999999987653 33568899
Q ss_pred hcccccCCccc--hhcccccCCCceeeeccCCcEEEEEEeCCeEEEeeEEEecCccccCCCeEEEEeCCccCCCCC
Q 043847 243 FLRHVVPCKIS--YQDLIDFDQGTVLPTFLEGFKINVTKSLKDLYLNNVRVNDPSLYLNDWMFIHGVEKIVPEYVP 316 (325)
Q Consensus 243 L~yHvVp~~~~--~~~L~~~~~g~~l~Tl~~g~~l~v~~~~~~v~vng~~V~~~di~~~~ngvIH~Id~VL~P~~~ 316 (325)
+.||++++... ..+......+ ..-+. .|..+.+........+|..+++..|++ ..||++|+||.|+.|++.
T Consensus 572 l~yH~v~~~~~ls~~~~~~v~~~-~k~s~-~~~~~~~~~~~~~~~vn~e~~~~~~i~-~~n~~~h~i~~vl~p~~l 644 (682)
T KOG1437|consen 572 LKYHLVPGQSRLSLGSSPYVMIQ-VKLSL-RGDHLFFSLVNPRGDVNKERLVGIDIM-GTNGVVHVIDLVLKPPDL 644 (682)
T ss_pred HHhccccceeeeecccccceeee-eeEEE-ecccEEeeeeccccceeeeeeecccee-eecceeEEEEEEcccCcc
Confidence 99999999653 1111100000 11121 344555555556777888999999976 568999999999999843
No 4
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.79 E-value=1.4e-19 Score=149.38 Aligned_cols=113 Identities=27% Similarity=0.387 Sum_probs=83.4
Q ss_pred hHHHHHHHHH-hhcccc-CCCceeEEEeCCCHHHhccC--------CChhhHHhhhcccccCCccchhcccccCCCceee
Q 043847 198 YNVMASFLQL-QLVGFK-DQTVVLTVFAPPDEAFQGYF--------GNFSEYSSIFLRHVVPCKISYQDLIDFDQGTVLP 267 (325)
Q Consensus 198 f~~~~~~L~~-~~~~l~-~~~~~~TvFAPtd~AF~~l~--------~~~~~l~~iL~yHvVp~~~~~~~L~~~~~g~~l~ 267 (325)
|+.|..+++. .+...+ +..+.+|+|||+|+||+++. .+.+.++++|+||++++.++.++++.. ++.++
T Consensus 3 ~s~f~~~l~~~~l~~~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~--~~~~~ 80 (128)
T PF02469_consen 3 LSTFSRLLEQAGLADLLNDSDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNG--KQTLE 80 (128)
T ss_dssp THHHHHHHHHTTCHHHHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCH--HEEEE
T ss_pred HHHHHHHHHHcCCHHHHhcCCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhccc--cccce
Confidence 5555555542 233333 44455999999999998773 134568999999999999988887642 15788
Q ss_pred eccCCcEEEEEEe--CCeEEEee-EEEecCccccCCCeEEEEeCCccCC
Q 043847 268 TFLEGFKINVTKS--LKDLYLNN-VRVNDPSLYLNDWMFIHGVEKIVPE 313 (325)
Q Consensus 268 Tl~~g~~l~v~~~--~~~v~vng-~~V~~~di~~~~ngvIH~Id~VL~P 313 (325)
|...|..+.|+.. ++.++||+ ++|+..|+. ++||+||+||+||.|
T Consensus 81 t~~~g~~~~v~~~~~~~~~~v~~~a~i~~~~~~-~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 81 TLLNGQPLRVSSSPSNGTIYVNGKARIVKSDIE-ASNGVIHIIDDVLIP 128 (128)
T ss_dssp BSSTTCEEEEEEEGGTTEEEECCEEEESEEEEE-ESSEEEEEESS-TSS
T ss_pred eccCCCEEEEEEEecCCceEecCceEEEeCCEE-eCCEEEEEECceECc
Confidence 8558999999876 78999999 999999975 578999999999998
No 5
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=1.1e-18 Score=151.46 Aligned_cols=123 Identities=21% Similarity=0.333 Sum_probs=96.6
Q ss_pred chhcHHHHHHhCC-chhHHHHHhhcccc-CCCCCCCeEEEeeCcHHHhcCCC--------Cc----H-HHhhhcccCCcc
Q 043847 25 SVSDAVEILSNSG-YLSMALTLEFGSKF-LTPPSPSLTIFSPSDSAFASFGQ--------PS----L-ALLQLHFSPLSF 89 (325)
Q Consensus 25 ~~~ni~~iL~~~g-~~s~~~~l~~~~~~-~l~~~~~~TvFAPtd~Af~~~~~--------~~----l-~lL~yHvv~g~~ 89 (325)
.-.++.+.-.+++ |..+..+++.++.. .+...|+||||||+|+||.+++. |+ + .+|.|||++|++
T Consensus 46 ~~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~ 125 (187)
T COG2335 46 NRADIVESAANNPSFTTLVAALKAAGLVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKI 125 (187)
T ss_pred chhHHHHHHccCcchHHHHHHHHhhhhHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCcc
Confidence 4467777665554 66677777765533 45667999999999999999863 22 1 899999999999
Q ss_pred ccccccCCCCCCeeecccCCceEEEEEcCCCCeEEEccEEEecCccc-cCCCeEEEEeCCccCCCcc
Q 043847 90 PSTFMKTLPYHAKIPTMSPNHTLIVTSLPSDDQVSLNGVKINQPEIY-DDGSLRIFGIETFLDPDYS 155 (325)
Q Consensus 90 ~~~~L~~~~~g~~l~Tll~g~~l~vt~~~~~~~v~vng~~I~~~di~-~~G~~vvH~Id~vL~P~~~ 155 (325)
+.++++.. ..+.| +.|..++|... +++++||.++++..|+. +|| +||+||+||.||..
T Consensus 126 ~~~~l~~~---~~v~t-~~G~~~~i~~~--~~~~~Vn~a~v~~~di~a~Ng--vIhvID~Vl~Pp~~ 184 (187)
T COG2335 126 TAADLKSS---GSVKT-VQGADLKIKVT--GGGVYVNDATVTIADINASNG--VIHVIDKVLIPPMD 184 (187)
T ss_pred cHHHhhcc---cccee-ecCceEEEEEc--CCcEEEeeeEEEeccEeccCc--EEEEEeeeccCCCc
Confidence 99999863 34556 57999999886 34599999999999985 677 99999999999854
No 6
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.71 E-value=1.5e-17 Score=131.50 Aligned_cols=88 Identities=30% Similarity=0.471 Sum_probs=74.2
Q ss_pred EEEeeCcHHHhcCCCC---------cH-HHhhhcccCCccccccccCCCCCCeeecccCCceEEEEEcCCCCeEEEccEE
Q 043847 60 TIFSPSDSAFASFGQP---------SL-ALLQLHFSPLSFPSTFMKTLPYHAKIPTMSPNHTLIVTSLPSDDQVSLNGVK 129 (325)
Q Consensus 60 TvFAPtd~Af~~~~~~---------~l-~lL~yHvv~g~~~~~~L~~~~~g~~l~Tll~g~~l~vt~~~~~~~v~vng~~ 129 (325)
|+|||+|+||++++.. .+ ++|+||++++++..++|.. +..++|+ .|..++++..++.+.+++|+++
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~---~~~~~Tl-~g~~l~v~~~~~~~~i~in~~~ 76 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLN---GGTLPTL-AGSKLRVTRSGDSGTVTVNGAR 76 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhcc---CCccccC-CCCEEEEEEeCCCCeEEEcceE
Confidence 8999999999998531 22 8999999999999999985 5678886 4899999987432689999999
Q ss_pred EecCccc-cCCCeEEEEeCCccCCC
Q 043847 130 INQPEIY-DDGSLRIFGIETFLDPD 153 (325)
Q Consensus 130 I~~~di~-~~G~~vvH~Id~vL~P~ 153 (325)
|+++|+. .|| +||+||+||.|+
T Consensus 77 v~~~di~~~nG--vih~Id~vL~P~ 99 (99)
T smart00554 77 IVEADIAATNG--VVHVIDRVLLPP 99 (99)
T ss_pred EEECCEecCCe--EEEEECceeCCC
Confidence 9999997 455 999999999985
No 7
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.67 E-value=3.9e-17 Score=134.64 Aligned_cols=110 Identities=30% Similarity=0.448 Sum_probs=80.8
Q ss_pred chhHHHHHhhcccc-CC-CCCCCeEEEeeCcHHHhcCCCC-------c---H-HHhhhcccCCccccccccCCCCC-Cee
Q 043847 38 YLSMALTLEFGSKF-LT-PPSPSLTIFSPSDSAFASFGQP-------S---L-ALLQLHFSPLSFPSTFMKTLPYH-AKI 103 (325)
Q Consensus 38 ~~s~~~~l~~~~~~-~l-~~~~~~TvFAPtd~Af~~~~~~-------~---l-~lL~yHvv~g~~~~~~L~~~~~g-~~l 103 (325)
|..|+.+++.++-. .+ +..+.+|||||+|+||++++.. . + .+|+||++++.++.++|.. + ..+
T Consensus 3 ~s~f~~~l~~~~l~~~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~---~~~~~ 79 (128)
T PF02469_consen 3 LSTFSRLLEQAGLADLLNDSDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRN---GKQTL 79 (128)
T ss_dssp THHHHHHHHHTTCHHHHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHC---HHEEE
T ss_pred HHHHHHHHHHcCCHHHHhcCCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhcc---ccccc
Confidence 44455555544322 33 4558999999999999887311 1 2 8999999999999999985 4 578
Q ss_pred ecccCCceEEEEEcCCCCeEEEcc-EEEecCccc-cCCCeEEEEeCCccCC
Q 043847 104 PTMSPNHTLIVTSLPSDDQVSLNG-VKINQPEIY-DDGSLRIFGIETFLDP 152 (325)
Q Consensus 104 ~Tll~g~~l~vt~~~~~~~v~vng-~~I~~~di~-~~G~~vvH~Id~vL~P 152 (325)
.|.+.|..+.|+.+.+++.+++|+ ++|...|+. .|| +||+||+||.|
T Consensus 80 ~t~~~g~~~~v~~~~~~~~~~v~~~a~i~~~~~~~~nG--~ih~id~vL~P 128 (128)
T PF02469_consen 80 ETLLNGQPLRVSSSPSNGTIYVNGKARIVKSDIEASNG--VIHIIDDVLIP 128 (128)
T ss_dssp EBSSTTCEEEEEEEGGTTEEEECCEEEESEEEEEESSE--EEEEESS-TSS
T ss_pred eeccCCCEEEEEEEecCCceEecCceEEEeCCEEeCCE--EEEEECceECc
Confidence 886789999999874467899999 999999985 566 99999999988
No 8
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.53 E-value=4.5e-14 Score=144.10 Aligned_cols=219 Identities=13% Similarity=0.145 Sum_probs=139.7
Q ss_pred CCCCeEEEeeCcHHHhcCCCCcH-HHhhhcccCCccccccccCCC-------CCCeeecccCCceEEEEEcCCCCeEEEc
Q 043847 55 PSPSLTIFSPSDSAFASFGQPSL-ALLQLHFSPLSFPSTFMKTLP-------YHAKIPTMSPNHTLIVTSLPSDDQVSLN 126 (325)
Q Consensus 55 ~~~~~TvFAPtd~Af~~~~~~~l-~lL~yHvv~g~~~~~~L~~~~-------~g~~l~Tll~g~~l~vt~~~~~~~v~vn 126 (325)
..++.|.+||+|+||.+.+.... .++.||.+.|.+......... .++... .|+........++....+|
T Consensus 269 ~~d~rt~~a~tn~a~~~ip~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~s~~~~~~r~---~~~~~~~a~g~~g~~~~~n 345 (682)
T KOG1437|consen 269 FVDPRTHLAPTNEAFFTIPRGYPPRILGYHLVLGNLKYNHILDNMKLGPSLAPGTVRL---TGEGVAIAPGSSGERYHIN 345 (682)
T ss_pred ccccccccccCcchhhcccccCCCcccccccchhhhhhhhhcccccccccccccceee---ccccccccccCCCceEEee
Confidence 34678999999999988753332 556677776665444433210 011111 1222223332234567789
Q ss_pred cEEEecCccccCCCeEEEEeCCccCCCccccccCCCCCCCCccCCchhhhhcccCCCCcHHHHHHHHhhcChHHHHHHHH
Q 043847 127 GVKINQPEIYDDGSLRIFGIETFLDPDYSVSESQDGADPDLTLGQSVECLESVRGSEMNFDDAVRYLTTEGYNVMASFLQ 206 (325)
Q Consensus 127 g~~I~~~di~~~G~~vvH~Id~vL~P~~~~~~~~~~~~p~~~~~~p~~~~a~~~~~~~~~~~~~~~L~~~gf~~~~~~L~ 206 (325)
|..++..|...++ +++|.||.++.|+.. +.++++.++...+++..++.
T Consensus 346 g~~~I~kd~i~~~-~~lh~id~~l~p~~~-------------------------------~~l~~La~e~~~st~~rlv~ 393 (682)
T KOG1437|consen 346 GRAIIQKDFIHTN-GLLHYIDYVLEPDSL-------------------------------KNLMSLAREDEISTSMRLVA 393 (682)
T ss_pred cceeEEEeeeccc-eEEEEcccccCCchH-------------------------------HHHHHHHhcccccHHHHHHH
Confidence 9877767766442 399999999998622 24555555555566665553
Q ss_pred Hh-hcc-ccCCCceeEEEeCCCHHHhccCCCh--hhHHhhhcccccCCccchhcccccCCCceeeeccCCcEEEEEEeC-
Q 043847 207 LQ-LVG-FKDQTVVLTVFAPPDEAFQGYFGNF--SEYSSIFLRHVVPCKISYQDLIDFDQGTVLPTFLEGFKINVTKSL- 281 (325)
Q Consensus 207 ~~-~~~-l~~~~~~~TvFAPtd~AF~~l~~~~--~~l~~iL~yHvVp~~~~~~~L~~~~~g~~l~Tl~~g~~l~v~~~~- 281 (325)
.. +-. +..... +|+|+|+|+||+.+.... ...+.+|+||++|.+...++..+. ++.++|+ .|..+..-...
T Consensus 394 elgll~~L~~n~e-~t~~lp~n~~fd~~~~~~~r~l~~qIL~~HII~~~~~~~~~y~~--~~~v~t~-g~~~l~~fv~r~ 469 (682)
T KOG1437|consen 394 ELGLLTALAPNDE-ATLLLPTNNLFDDLTPLESRRLAEQILYNHIIPEYLTSSSMYNG--QTTVRTL-GKNKLLYFVYRH 469 (682)
T ss_pred hccceEEEcCCCc-eEEeeehhhhccCCChhhhHHHHHHHHHHhCcchhhhhhhhhcc--cceeecc-CCeEEEEEEecc
Confidence 32 223 445556 999999999999864321 225789999999999988877642 3367776 55555543222
Q ss_pred ----C--eEEEee-EEEecCccccCCCeEEEEeCCccCC
Q 043847 282 ----K--DLYLNN-VRVNDPSLYLNDWMFIHGVEKIVPE 313 (325)
Q Consensus 282 ----~--~v~vng-~~V~~~di~~~~ngvIH~Id~VL~P 313 (325)
+ .+.++| +.|.+.|+. ..||+||.||+|+.|
T Consensus 470 ~~s~~~t~i~~~~~~~Ii~aDi~-~~nGvvH~id~vl~p 507 (682)
T KOG1437|consen 470 SVSANVTDILIGNEACIIEADIS-VKNGVVHIIDRVLDP 507 (682)
T ss_pred cccccceeeeccceeeEEecccc-eecCceEEeeEEcCc
Confidence 1 456666 467788965 578999999999999
No 9
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=67.69 E-value=2.7 Score=33.15 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=15.2
Q ss_pred ChhhHHHHHHHHH--HhhccCCCCC
Q 043847 1 MAAKLVISLTLLS--LFSLSYPLPD 23 (325)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~ 23 (325)
|++|.+++|.||| +|.+|+..++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhh
Confidence 8999888887765 4445444443
No 10
>PF15240 Pro-rich: Proline-rich
Probab=34.98 E-value=26 Score=30.81 Aligned_cols=24 Identities=29% Similarity=0.229 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHhhccCCCCCCchh
Q 043847 4 KLVISLTLLSLFSLSYPLPDNSVS 27 (325)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~ 27 (325)
||||+||.-+|...|+.-....+.
T Consensus 1 MLlVLLSvALLALSSAQ~~dEdv~ 24 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQSTDEDVS 24 (179)
T ss_pred ChhHHHHHHHHHhhhccccccccc
Confidence 789999987777777777765553
No 11
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=24.62 E-value=42 Score=18.23 Aligned_cols=15 Identities=53% Similarity=0.669 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHhhcc
Q 043847 4 KLVISLTLLSLFSLS 18 (325)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (325)
|++|.|..|+++|+.
T Consensus 3 k~vIIlvvLLliSf~ 17 (19)
T PF13956_consen 3 KLVIILVVLLLISFP 17 (19)
T ss_pred eehHHHHHHHhcccc
Confidence 456666666666654
Done!