BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043850
(309 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 84 IFDSRKEIFQVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAE 141
IF +RK++ + + L + + + +YGM G GK+ L A V + L +
Sbjct: 125 IFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLA---AEAVRDHSLLEGCFSGG 181
Query: 142 VTQTPDYRKIEDQFAF---DLGMKLDLNDSTLERT--------DGLRK-RLNKEMRVLII 189
V ++ + +L M+LD +S +R D LR L K R L+I
Sbjct: 182 VHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLI 241
Query: 190 LDNIWTK-LEKDDQERCTIVLISRSRDL 216
LD++W + K +C I+L +R + +
Sbjct: 242 LDDVWDPWVLKAFDNQCQILLTTRDKSV 269
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 84 IFDSRKEIFQVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAE 141
IF +RK++ + + L + + + +YGM G GK+ L A V + L +
Sbjct: 132 IFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLA---AEAVRDHSLLEGCFSGG 188
Query: 142 VTQTPDYRKIEDQFAF---DLGMKLDLNDSTLERT--------DGLRK-RLNKEMRVLII 189
V ++ + +L M+LD +S +R D LR L K R L+I
Sbjct: 189 VHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLI 248
Query: 190 LDNIWTK-LEKDDQERCTIVLISRSRDL 216
LD++W + K +C I+L + + +
Sbjct: 249 LDDVWDPWVLKAFDNQCQILLTTSDKSV 276
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 67 YHPAPDRAELRDVKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAM 126
+ PAP EL + EI ++ ++ ++ +K K IG++G GVGKT L++++
Sbjct: 119 HRPAPKFEEL--ATEVEILETGIKVVDLLAPYIKGGK---IGLFGGAGVGKTVLIQELIH 173
Query: 127 KVMEDK 132
+ ++
Sbjct: 174 NIAQEH 179
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 22/150 (14%)
Query: 84 IFDSRKEIFQVVMESLKDDKLK----VIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVM 139
+F +RK++ + + L KLK + ++GM G GK+ L A V + L +
Sbjct: 131 VFVTRKKLVNAIQQKLS--KLKGEPGWVTIHGMAGCGKSVLA---AEAVRDHSLLEGCFP 185
Query: 140 AEVTQTPDYRKIEDQFAF---DLGMKLDLNDSTLERT--------DGLR-KRLNKEMRVL 187
V ++ + +L +LD ++S +R D LR L K R L
Sbjct: 186 GGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSL 245
Query: 188 IILDNIW-TKLEKDDQERCTIVLISRSRDL 216
+ILD++W + + K +C I+L +R + +
Sbjct: 246 LILDDVWDSWVLKAFDSQCQILLTTRDKSV 275
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 96/235 (40%), Gaps = 38/235 (16%)
Query: 84 IFDSRKEIFQVVMESLKDDKLK----VIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVM 139
+F +RK++ + + L KLK + ++GM G GK+ L A V + L +
Sbjct: 125 VFVTRKKLVNAIQQKL--SKLKGEPGWVTIHGMAGCGKSVLA---AEAVRDHSLLEGCFP 179
Query: 140 AEVTQTPDYRKIEDQFAF---DLGMKLDLNDSTLERT--------DGLR-KRLNKEMRVL 187
V ++ + +L +LD ++S +R D LR L K R L
Sbjct: 180 GGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSL 239
Query: 188 IILDNIW-TKLEKDDQERCTIVLISRSRDLLCNDMNSQKDFWIDDS-------------- 232
+ILD++W + + K +C I+L +R + + + M + ++ S
Sbjct: 240 LILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFV 299
Query: 233 -TRISAYQPTEHEIVERRGGLPVAPSTIANALKSKSVAIWKDALNQLKSPSLKEI 286
+ + H I++ G P+ S I L+ W+ L QL++ K I
Sbjct: 300 NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNR-WEYYLKQLQNKQFKRI 353
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 67 YHPAPDRAELRDVKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAM 126
+ PAP+ EL EI ++ ++ ++ K K IG++G GVGKT L++++
Sbjct: 112 HRPAPEFEELSTAD--EILETGIKVIDLLAPYAKGGK---IGLFGGAGVGKTVLIQELIN 166
Query: 127 KVMED 131
V ++
Sbjct: 167 NVAQE 171
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 77 RDVKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVA 125
R VKDY F ++ +E + K +VIG+ G G+GKTT VK +A
Sbjct: 292 RLVKDYGSF-------RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLA 333
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 77 RDVKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVA 125
R VKDY F ++ +E + K +VIG+ G G+GKTT VK +A
Sbjct: 362 RLVKDYGSF-------KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLA 403
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 92 FQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVA 125
F++ +E + K +VIG+ G G+GKTT VK +A
Sbjct: 356 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLA 389
>pdb|1E6V|A Chain A, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
pdb|1E6V|D Chain D, Methyl-Coenzyme M Reductase From Methanopyrus Kandleri
Length = 553
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 215 DLLCNDMNSQKDFWIDDSTRISAYQPTEHEIVERRGGLPVAPSTIANALKSKSVAIWKDA 274
DL + + + W D + T H ++ERR G V P TI +++ + A+ A
Sbjct: 88 DLTFVNNAAMQQMWDDIRRTVIVGMDTAHRVLERRLGKEVTPETINEYMETLNHALPGGA 147
Query: 275 LNQLKSPSLKEIH-GMDADVYSSI 297
+ Q + EIH G+ D Y+ I
Sbjct: 148 VVQ---EHMVEIHPGLTWDCYAKI 168
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 20/149 (13%)
Query: 111 GMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGM---KLDLND 167
G G GK+T+VKQ MK++ + + + + I+ A M K+D D
Sbjct: 14 GAGESGKSTIVKQ--MKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 71
Query: 168 STLERTDGLRKRL-----NKEMRVLIILDNIWTKLEKDDQERCTIVLISRSRDLLCNDMN 222
S R D R+ +E + L + +L KD + +RSR+ L ND
Sbjct: 72 SA--RADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQ---ACFNRSREYLLNDSA 126
Query: 223 SQKDFWIDDSTRISA--YQPTEHEIVERR 249
+ ++++D RI+ Y PT+ +++ R
Sbjct: 127 A---YYLNDLDRIAQPNYIPTQQDVLRTR 152
>pdb|3CWX|A Chain A, Crystal Structure Of Cagd From Helicobacter Pylori
Pathogenicity Island
pdb|3CWX|B Chain B, Crystal Structure Of Cagd From Helicobacter Pylori
Pathogenicity Island
pdb|3CWX|C Chain C, Crystal Structure Of Cagd From Helicobacter Pylori
Pathogenicity Island
pdb|3CWY|A Chain A, Structure Of Cagd From H. Pylori Pathogenicity Island
Crystallized In The Presence Of Cu(Ii) Ions
Length = 176
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 117 KTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGL 176
K K+V +++D++FD V++ V +KI+D +D ++ ++ E +
Sbjct: 41 KKVTFKEVNPDIIKDEVFDFVIVNRVL-----KKIKDLKHYDPXIEKIFDEKGKEXGLNV 95
Query: 177 RKRLNKEMRVLIILDNIWTKLEKDDQERCTIVLISRSRDLLCND 220
++N E++ +I T +++RC + L +R++LC++
Sbjct: 96 EIQINPEVKDFFTFKSISTT----NKQRCFLSLRGETREILCDN 135
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 86 DSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKL--FDKVVMAEVT 143
D ++I ++ +++K I +YG+ G GKT +VK V K+ + L F V +
Sbjct: 27 DQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86
Query: 144 QTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMR-----VLIILDNI 193
YR + D L +K+ ++ L +RL K +R V+I+LD I
Sbjct: 87 IDTPYRVLADLLE-SLDVKVPFTGLSIAE---LYRRLVKAVRDYGSQVVIVLDEI 137
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 27/41 (65%)
Query: 92 FQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDK 132
FQ+V+++ + + ++IG+ G G+GKTT + + ++ D+
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE 322
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 106 VIGVYGMGGVGKTTLVKQVAMKVMED 131
++GV G GVGKTT++K +A +++ +
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPN 52
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 55 NLLRKGNFSSVSYHPAPDRAELRDVKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGG 114
N L S + P P D + E+ +R+ + V S+K + V G+ G
Sbjct: 603 NSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNV--SVKIPLGTFVAVTGVSG 660
Query: 115 VGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERT 173
GK+TLV +V K + KL A+ + D R +E L +D++ S + RT
Sbjct: 661 SGKSTLVNEVLYKALAQKLHR--AKAKPGEHRDIRGLE-----HLDKVIDIDQSPIGRT 712
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 55 NLLRKGNFSSVSYHPAPDRAELRDVKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGG 114
N L S + P P D + E+ +R+ + V S+K + V G+ G
Sbjct: 603 NSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNV--SVKIPLGTFVAVTGVSG 660
Query: 115 VGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERT 173
GK+TLV +V K + KL A+ + D R +E L +D++ S + RT
Sbjct: 661 SGKSTLVNEVLYKALAQKLHR--AKAKPGEHRDIRGLE-----HLDKVIDIDQSPIGRT 712
>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
pdb|3C7K|C Chain C, Molecular Architecture Of Galphao And The Structural Basis
For Rgs16-Mediated Deactivation
Length = 333
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 71/165 (43%), Gaps = 24/165 (14%)
Query: 96 MESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMED--------KLFDKVVMAEVTQT-P 146
+ + KD KL ++G G GK+T+VKQ MK++ + K + VV + Q+
Sbjct: 7 ISAAKDVKLLLLGA---GESGKSTIVKQ--MKIIHEDGFSGEDVKQYKPVVYSNTIQSLA 61
Query: 147 DYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLEKDDQERCT 206
+ D + G K DS + D + + + E +L + + C
Sbjct: 62 AIVRAMDTLGVEYGDKERKTDSKM-VCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQEC- 119
Query: 207 IVLISRSRDLLCNDMNSQKDFWIDDSTRISA--YQPTEHEIVERR 249
+RSR+ ND +++D RI A YQPTE +I+ R
Sbjct: 120 ---FNRSREYQLND---SAKYYLDSLDRIGAGDYQPTEQDILRTR 158
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 55 NLLRKGNFSSVSYHPAPDRAELRDVKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGG 114
N L S + P P D + E+ +R+ + V S+K + V G+ G
Sbjct: 301 NSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGAREHNLKNV--SVKIPLGTFVAVTGVSG 358
Query: 115 VGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERT 173
GK+TLV +V K + KL A+ + D R +E L +D++ S + RT
Sbjct: 359 SGKSTLVNEVLYKALAQKLHR--AKAKPGEHRDIRGLE-----HLDKVIDIDQSPIGRT 410
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 111 GMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGM---KLDLND 167
G G GK+T+VKQ MK++ + + + + I+ A M K+D D
Sbjct: 13 GAGESGKSTIVKQ--MKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 70
Query: 168 STLERTDGLRKRL-----NKEMRVLIILDNIWTKLEKDDQERCTIVLISRSRDLLCNDMN 222
S R D R+ +E + L + +L KD + +RSR+ ND
Sbjct: 71 SA--RADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQ---ACFNRSREYQLNDSA 125
Query: 223 SQKDFWIDDSTRISA--YQPTEHEIVERR 249
+ ++++D RI+ Y PT+ +++ R
Sbjct: 126 A---YYLNDLDRIAQPNYIPTQQDVLRTR 151
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 111 GMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGM---KLDLND 167
G G GK+T+VKQ MK++ + + + + I+ A M K+D D
Sbjct: 11 GAGESGKSTIVKQ--MKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 68
Query: 168 STLERTDGLRKRL-----NKEMRVLIILDNIWTKLEKDDQERCTIVLISRSRDLLCNDMN 222
S R D R+ +E + L + +L KD + +RSR+ ND
Sbjct: 69 SA--RADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQ---ACFNRSREYQLNDSA 123
Query: 223 SQKDFWIDDSTRISA--YQPTEHEIVERR 249
+ ++++D RI+ Y PT+ +++ R
Sbjct: 124 A---YYLNDLDRIAQPNYIPTQQDVLRTR 149
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 111 GMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGM---KLDLND 167
G G GK+T+VKQ MK++ + + + + I+ A M K+D D
Sbjct: 10 GAGESGKSTIVKQ--MKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 67
Query: 168 STLERTDGLRKRL-----NKEMRVLIILDNIWTKLEKDDQERCTIVLISRSRDLLCNDMN 222
S R D R+ +E + L + +L KD + +RSR+ ND
Sbjct: 68 SA--RADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQ---ACFNRSREYQLNDSA 122
Query: 223 SQKDFWIDDSTRISA--YQPTEHEIVERR 249
+ ++++D RI+ Y PT+ +++ R
Sbjct: 123 A---YYLNDLDRIAQPNYIPTQQDVLRTR 148
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 111 GMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGM---KLDLND 167
G G GK+T+VKQ MK++ + + + + I+ A M K+D D
Sbjct: 15 GAGESGKSTIVKQ--MKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 72
Query: 168 STLERTDGLRKRL-----NKEMRVLIILDNIWTKLEKDDQERCTIVLISRSRDLLCNDMN 222
S R D R+ +E + L + +L KD + +RSR+ ND
Sbjct: 73 SA--RADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQ---ACFNRSREYQLNDSA 127
Query: 223 SQKDFWIDDSTRISA--YQPTEHEIVERR 249
+ ++++D RI+ Y PT+ +++ R
Sbjct: 128 A---YYLNDLDRIAQPNYIPTQQDVLRTR 153
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 111 GMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGM---KLDLND 167
G G GK+T+VKQ MK++ + + + + I+ A M K+D D
Sbjct: 16 GAGESGKSTIVKQ--MKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 73
Query: 168 STLERTDGLRKRL-----NKEMRVLIILDNIWTKLEKDDQERCTIVLISRSRDLLCNDMN 222
S R D R+ +E + L + +L KD + +RSR+ ND
Sbjct: 74 SA--RADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQ---ACFNRSREYQLNDSA 128
Query: 223 SQKDFWIDDSTRISA--YQPTEHEIVERR 249
+ ++++D RI+ Y PT+ +++ R
Sbjct: 129 A---YYLNDLDRIAQPNYIPTQQDVLRTR 154
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 111 GMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGM---KLDLND 167
G G GK+T+VKQ MK++ + + + + I+ A M K+D D
Sbjct: 40 GAGESGKSTIVKQ--MKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 97
Query: 168 STLERTDGLRKRL-----NKEMRVLIILDNIWTKLEKDDQERCTIVLISRSRDLLCNDMN 222
S R D R+ +E + L + +L KD + +RSR+ ND
Sbjct: 98 SA--RADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQ---ACFNRSREYQLNDSA 152
Query: 223 SQKDFWIDDSTRISA--YQPTEHEIVERR 249
+ ++++D RI+ Y PT+ +++ R
Sbjct: 153 A---YYLNDLDRIAQPNYIPTQQDVLRTR 178
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 111 GMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGM---KLDLND 167
G G GK+T+VKQ MK++ + + + + I+ A M K+D D
Sbjct: 8 GAGESGKSTIVKQ--MKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 65
Query: 168 STLERTDGLRKRL-----NKEMRVLIILDNIWTKLEKDDQERCTIVLISRSRDLLCNDMN 222
S R D R+ +E + L + +L KD + +RSR+ ND
Sbjct: 66 SA--RADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQ---ACFNRSREYQLNDSA 120
Query: 223 SQKDFWIDDSTRISA--YQPTEHEIVERR 249
+ ++++D RI+ Y PT+ +++ R
Sbjct: 121 A---YYLNDLDRIAQPNYIPTQQDVLRTR 146
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 111 GMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGM---KLDLND 167
G G GK+T+VKQ MK++ + + + + I+ A M K+D D
Sbjct: 40 GAGESGKSTIVKQ--MKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 97
Query: 168 STLERTDGLRKRL-----NKEMRVLIILDNIWTKLEKDDQERCTIVLISRSRDLLCNDMN 222
S R D R+ +E + L + +L KD + +RSR+ ND
Sbjct: 98 SA--RADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQ---ACFNRSREYQLNDSA 152
Query: 223 SQKDFWIDDSTRISA--YQPTEHEIVERR 249
+ ++++D RI+ Y PT+ +++ R
Sbjct: 153 A---YYLNDLDRIAQPNYIPTQQDVLRTR 178
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 111 GMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGM---KLDLND 167
G G GK+T+VKQ MK++ + + + + I+ A M K+D D
Sbjct: 9 GAGESGKSTIVKQ--MKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGD 66
Query: 168 STLERTDGLRKRL-----NKEMRVLIILDNIWTKLEKDDQERCTIVLISRSRDLLCNDMN 222
S R D R+ +E + L + +L KD + +RSR+ ND
Sbjct: 67 SA--RADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQ---ACFNRSREYQLNDSA 121
Query: 223 SQKDFWIDDSTRISA--YQPTEHEIVERR 249
+ ++++D RI+ Y PT+ +++ R
Sbjct: 122 A---YYLNDLDRIAQPNYIPTQQDVLRTR 147
>pdb|3TK1|A Chain A, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
pdb|3TK1|B Chain B, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
Length = 330
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 86 DSRKEIFQVVMESLKD-DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130
D R+ ++++E + D + +G+ G+ GVGK+T ++ + M ++E
Sbjct: 37 DHRERAQELLLELMPDAGRAMHVGITGVPGVGKSTSIEALGMHLIE 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,145,182
Number of Sequences: 62578
Number of extensions: 310708
Number of successful extensions: 1218
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 61
length of query: 309
length of database: 14,973,337
effective HSP length: 99
effective length of query: 210
effective length of database: 8,778,115
effective search space: 1843404150
effective search space used: 1843404150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)