Query 043850
Match_columns 309
No_of_seqs 333 out of 2210
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:52:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.6E-42 1.9E-46 334.1 25.9 269 36-306 111-410 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 3E-36 6.4E-41 265.3 16.2 218 88-307 1-250 (287)
3 PLN03210 Resistant to P. syrin 100.0 3.2E-29 6.9E-34 256.2 22.6 215 79-307 180-436 (1153)
4 PRK04841 transcriptional regul 99.3 1.9E-10 4.1E-15 116.7 18.3 178 79-265 10-231 (903)
5 TIGR03015 pepcterm_ATPase puta 99.3 2E-09 4.3E-14 93.8 21.6 159 101-263 40-242 (269)
6 PF01637 Arch_ATPase: Archaeal 99.2 3.9E-11 8.4E-16 101.9 9.7 171 85-258 1-233 (234)
7 PRK00411 cdc6 cell division co 99.2 6.2E-10 1.3E-14 102.4 15.0 117 81-197 28-151 (394)
8 TIGR02928 orc1/cdc6 family rep 99.2 8E-10 1.7E-14 100.6 14.4 115 82-196 14-141 (365)
9 PF05729 NACHT: NACHT domain 99.1 8.7E-10 1.9E-14 88.5 10.2 106 105-216 1-132 (166)
10 PF13401 AAA_22: AAA domain; P 99.1 8.9E-10 1.9E-14 85.1 9.5 111 103-213 3-125 (131)
11 TIGR00635 ruvB Holliday juncti 99.0 2E-08 4.4E-13 89.1 15.4 174 82-262 3-204 (305)
12 PF13191 AAA_16: AAA ATPase do 98.9 4E-09 8.8E-14 86.3 8.7 48 84-131 1-51 (185)
13 PRK00080 ruvB Holliday junctio 98.9 3.8E-08 8.3E-13 88.2 15.3 177 79-262 21-225 (328)
14 COG1474 CDC6 Cdc6-related prot 98.9 2.7E-08 5.7E-13 89.8 14.2 116 83-198 17-137 (366)
15 cd00009 AAA The AAA+ (ATPases 98.9 2.8E-08 6.2E-13 77.5 12.6 115 86-215 1-131 (151)
16 PTZ00202 tuzin; Provisional 98.9 8.6E-08 1.9E-12 86.6 15.5 103 78-190 257-367 (550)
17 COG2909 MalT ATP-dependent tra 98.9 1.3E-07 2.8E-12 91.0 17.4 181 78-264 14-238 (894)
18 cd01128 rho_factor Transcripti 98.9 5.7E-09 1.2E-13 89.2 7.1 95 103-198 15-117 (249)
19 COG2256 MGS1 ATPase related to 98.9 2.6E-08 5.6E-13 88.3 11.1 128 79-230 20-161 (436)
20 PRK13342 recombination factor 98.8 7.6E-08 1.6E-12 89.0 12.8 52 79-130 8-62 (413)
21 PTZ00112 origin recognition co 98.8 1.9E-07 4.1E-12 90.7 14.5 116 82-197 754-882 (1164)
22 PF05621 TniB: Bacterial TniB 98.7 1.2E-06 2.6E-11 75.9 15.7 109 90-198 44-159 (302)
23 PRK12402 replication factor C 98.7 7.8E-07 1.7E-11 80.0 15.2 52 79-130 11-62 (337)
24 PF05496 RuvB_N: Holliday junc 98.7 4E-07 8.6E-12 75.5 12.0 53 79-131 20-77 (233)
25 PRK07003 DNA polymerase III su 98.7 1.7E-06 3.7E-11 83.5 17.9 52 79-130 12-64 (830)
26 PRK14949 DNA polymerase III su 98.7 9.6E-07 2.1E-11 86.7 16.2 52 79-130 12-64 (944)
27 PRK09376 rho transcription ter 98.7 7.7E-08 1.7E-12 86.2 7.8 90 104-195 169-267 (416)
28 PLN03025 replication factor C 98.6 6.8E-07 1.5E-11 79.9 13.4 52 79-130 9-60 (319)
29 KOG2028 ATPase related to the 98.6 7.9E-08 1.7E-12 84.1 7.0 115 82-216 137-263 (554)
30 COG3899 Predicted ATPase [Gene 98.6 8.6E-07 1.9E-11 88.5 15.2 48 84-131 1-51 (849)
31 PRK12323 DNA polymerase III su 98.6 6.9E-07 1.5E-11 85.0 12.9 52 79-130 12-64 (700)
32 PRK00440 rfc replication facto 98.6 2.3E-06 5E-11 76.3 15.9 53 79-131 13-65 (319)
33 TIGR00767 rho transcription te 98.6 1.8E-07 3.9E-12 84.2 8.1 92 104-196 168-267 (415)
34 COG3903 Predicted ATPase [Gene 98.6 1.1E-07 2.3E-12 84.8 6.2 191 103-305 13-238 (414)
35 PRK06893 DNA replication initi 98.6 1.3E-06 2.8E-11 74.2 12.6 40 102-143 37-76 (229)
36 TIGR03420 DnaA_homol_Hda DnaA 98.6 1.2E-06 2.6E-11 74.2 12.4 60 82-143 14-75 (226)
37 PRK14961 DNA polymerase III su 98.6 2.7E-06 6E-11 77.3 15.2 51 79-129 12-63 (363)
38 PF13173 AAA_14: AAA domain 98.5 3.5E-07 7.6E-12 70.4 7.3 93 104-217 2-102 (128)
39 PRK04195 replication factor C 98.5 3.1E-06 6.7E-11 79.9 15.0 51 79-129 10-64 (482)
40 PRK14963 DNA polymerase III su 98.5 3.9E-06 8.5E-11 79.1 15.4 52 79-130 10-62 (504)
41 PRK14957 DNA polymerase III su 98.5 2.9E-06 6.2E-11 80.3 14.1 51 79-129 12-63 (546)
42 PF14516 AAA_35: AAA-like doma 98.5 2.2E-05 4.7E-10 70.5 19.2 185 79-266 7-246 (331)
43 PRK14962 DNA polymerase III su 98.5 3.2E-06 6.8E-11 79.1 14.2 52 79-130 10-62 (472)
44 KOG2543 Origin recognition com 98.5 2.3E-06 5E-11 75.5 12.4 113 81-198 4-129 (438)
45 PRK05564 DNA polymerase III su 98.5 3.8E-06 8.3E-11 74.8 13.9 157 83-257 4-188 (313)
46 PRK14960 DNA polymerase III su 98.5 3.8E-06 8.3E-11 80.2 14.0 52 79-130 11-63 (702)
47 PRK14958 DNA polymerase III su 98.5 3.4E-06 7.3E-11 79.7 13.5 52 79-130 12-64 (509)
48 PRK14964 DNA polymerase III su 98.5 5.5E-06 1.2E-10 77.4 14.6 50 79-128 9-59 (491)
49 PRK06645 DNA polymerase III su 98.4 7.1E-06 1.5E-10 77.2 15.3 52 79-130 17-69 (507)
50 PRK07994 DNA polymerase III su 98.4 4.3E-06 9.2E-11 80.5 13.8 52 79-130 12-64 (647)
51 PRK14956 DNA polymerase III su 98.4 1.5E-06 3.3E-11 80.3 10.3 52 79-130 14-66 (484)
52 KOG2227 Pre-initiation complex 98.4 4.8E-06 1E-10 75.4 13.0 120 79-198 146-270 (529)
53 PHA02544 44 clamp loader, smal 98.4 6.6E-06 1.4E-10 73.4 14.1 50 79-128 17-67 (316)
54 PRK07471 DNA polymerase III su 98.4 1.2E-05 2.6E-10 72.9 15.7 52 79-130 15-67 (365)
55 PRK03992 proteasome-activating 98.4 8.1E-06 1.8E-10 74.8 14.7 47 83-129 131-190 (389)
56 PRK11331 5-methylcytosine-spec 98.4 2.4E-06 5.1E-11 78.3 11.0 111 83-198 175-286 (459)
57 PRK09112 DNA polymerase III su 98.4 1.5E-05 3.2E-10 71.9 15.9 52 79-130 19-71 (351)
58 PRK08691 DNA polymerase III su 98.4 5.5E-06 1.2E-10 79.7 13.5 51 79-129 12-63 (709)
59 PRK13341 recombination factor 98.4 2.4E-06 5.3E-11 83.6 11.2 52 79-130 24-78 (725)
60 TIGR02397 dnaX_nterm DNA polym 98.4 1.9E-05 4.1E-10 71.6 16.0 51 79-129 10-61 (355)
61 PRK05896 DNA polymerase III su 98.4 7.6E-06 1.7E-10 77.8 13.4 52 79-130 12-64 (605)
62 PRK07940 DNA polymerase III su 98.4 8.1E-06 1.8E-10 74.6 13.2 47 83-129 5-61 (394)
63 PRK07764 DNA polymerase III su 98.4 9.8E-06 2.1E-10 80.4 14.5 52 79-130 11-63 (824)
64 PRK14969 DNA polymerase III su 98.3 9.4E-06 2E-10 77.1 13.6 52 79-130 12-64 (527)
65 PRK14951 DNA polymerase III su 98.3 1.1E-05 2.4E-10 77.5 14.1 51 79-129 12-63 (618)
66 TIGR01242 26Sp45 26S proteasom 98.3 4.6E-06 1E-10 75.9 11.2 48 83-130 122-182 (364)
67 PRK09111 DNA polymerase III su 98.3 1.4E-05 3E-10 76.8 14.6 52 79-130 20-72 (598)
68 PRK14955 DNA polymerase III su 98.3 8.6E-06 1.9E-10 74.9 12.4 52 79-130 12-64 (397)
69 PRK08903 DnaA regulatory inact 98.3 1.6E-05 3.5E-10 67.4 12.0 59 82-142 17-78 (227)
70 PRK14952 DNA polymerase III su 98.3 3E-05 6.4E-10 74.2 14.9 52 79-130 9-61 (584)
71 PF00004 AAA: ATPase family as 98.3 4E-06 8.7E-11 64.4 7.5 23 107-129 1-23 (132)
72 PRK14954 DNA polymerase III su 98.2 2.4E-05 5.3E-10 75.3 14.1 52 79-130 12-64 (620)
73 TIGR00678 holB DNA polymerase 98.2 4E-05 8.7E-10 63.0 13.7 37 94-130 3-40 (188)
74 PRK14959 DNA polymerase III su 98.2 4.3E-05 9.4E-10 73.1 15.6 52 79-130 12-64 (624)
75 PRK14950 DNA polymerase III su 98.2 3.7E-05 8.1E-10 74.2 15.4 51 79-129 12-63 (585)
76 PRK08727 hypothetical protein; 98.2 8.3E-06 1.8E-10 69.5 9.6 105 82-214 18-136 (233)
77 PRK08084 DNA replication initi 98.2 1.1E-05 2.4E-10 68.7 10.4 59 83-143 22-82 (235)
78 TIGR02639 ClpA ATP-dependent C 98.2 8E-06 1.7E-10 80.9 10.5 50 81-130 180-229 (731)
79 PRK14953 DNA polymerase III su 98.2 5.2E-05 1.1E-09 71.3 15.2 51 79-129 12-63 (486)
80 CHL00095 clpC Clp protease ATP 98.2 1.1E-05 2.4E-10 80.9 11.3 101 83-196 179-283 (821)
81 PRK14970 DNA polymerase III su 98.2 7.3E-05 1.6E-09 68.2 15.8 52 79-130 13-65 (367)
82 TIGR01241 FtsH_fam ATP-depende 98.2 3.9E-05 8.5E-10 72.7 14.1 51 80-130 52-114 (495)
83 PRK09087 hypothetical protein; 98.2 3.2E-05 6.9E-10 65.5 12.1 26 103-128 43-68 (226)
84 smart00382 AAA ATPases associa 98.2 1.4E-05 3E-10 61.6 8.7 91 104-198 2-92 (148)
85 COG1222 RPT1 ATP-dependent 26S 98.1 3.9E-05 8.3E-10 67.5 12.0 114 82-217 150-303 (406)
86 PRK07133 DNA polymerase III su 98.1 5.8E-05 1.3E-09 73.3 14.1 51 79-129 14-65 (725)
87 TIGR02903 spore_lon_C ATP-depe 98.1 5.4E-05 1.2E-09 73.4 13.7 53 79-131 150-202 (615)
88 PRK08116 hypothetical protein; 98.1 3.5E-05 7.7E-10 66.9 11.2 94 105-214 115-221 (268)
89 PRK06305 DNA polymerase III su 98.1 8.9E-05 1.9E-09 69.2 14.5 52 79-130 13-65 (451)
90 PRK14971 DNA polymerase III su 98.1 0.00013 2.8E-09 70.6 15.7 51 79-129 13-64 (614)
91 PTZ00454 26S protease regulato 98.1 0.00015 3.3E-09 66.5 15.4 48 83-130 145-205 (398)
92 PRK08451 DNA polymerase III su 98.1 0.00017 3.6E-09 68.3 15.9 51 79-129 10-61 (535)
93 PRK05563 DNA polymerase III su 98.1 0.00016 3.4E-09 69.4 16.0 51 79-129 12-63 (559)
94 TIGR03345 VI_ClpV1 type VI sec 98.1 2.8E-05 6.1E-10 77.9 11.3 51 80-130 184-234 (852)
95 PRK14965 DNA polymerase III su 98.1 7.3E-05 1.6E-09 71.9 13.5 52 79-130 12-64 (576)
96 PTZ00361 26 proteosome regulat 98.0 5.8E-05 1.3E-09 69.8 11.8 48 83-130 183-243 (438)
97 PRK14087 dnaA chromosomal repl 98.0 0.00016 3.4E-09 67.5 14.5 160 104-278 141-348 (450)
98 PRK10536 hypothetical protein; 98.0 0.00014 3.1E-09 61.9 12.9 58 81-140 53-110 (262)
99 PRK14948 DNA polymerase III su 98.0 0.00021 4.6E-09 69.1 15.6 51 80-130 13-64 (620)
100 TIGR00362 DnaA chromosomal rep 98.0 0.00022 4.7E-09 66.0 15.1 94 104-214 136-242 (405)
101 PF05673 DUF815: Protein of un 98.0 0.0002 4.3E-09 60.5 13.3 52 80-131 24-79 (249)
102 PRK14088 dnaA chromosomal repl 98.0 0.00019 4.2E-09 66.8 14.7 94 104-214 130-237 (440)
103 PF04665 Pox_A32: Poxvirus A32 98.0 3.6E-05 7.8E-10 65.1 8.4 37 105-143 14-50 (241)
104 KOG0733 Nuclear AAA ATPase (VC 98.0 0.00013 2.7E-09 68.5 12.5 95 82-197 189-295 (802)
105 KOG0991 Replication factor C, 98.0 2.3E-05 5E-10 65.0 6.8 106 78-198 22-127 (333)
106 COG2255 RuvB Holliday junction 98.0 0.00016 3.5E-09 61.8 12.0 53 79-131 22-79 (332)
107 PRK10865 protein disaggregatio 98.0 4.5E-05 9.7E-10 76.7 10.2 50 81-130 176-225 (857)
108 KOG0734 AAA+-type ATPase conta 98.0 0.00015 3.3E-09 66.9 12.6 49 83-131 304-364 (752)
109 KOG0989 Replication factor C, 98.0 5.8E-05 1.2E-09 65.1 9.2 67 79-145 32-99 (346)
110 PRK05642 DNA replication initi 98.0 8.2E-05 1.8E-09 63.4 10.3 84 104-215 45-141 (234)
111 PRK08118 topology modulation p 97.9 5.9E-06 1.3E-10 66.6 3.0 35 105-139 2-37 (167)
112 TIGR03689 pup_AAA proteasome A 97.9 5E-05 1.1E-09 71.3 9.6 49 82-130 181-242 (512)
113 PF00308 Bac_DnaA: Bacterial d 97.9 5.6E-05 1.2E-09 63.7 9.0 95 104-215 34-141 (219)
114 PRK06647 DNA polymerase III su 97.9 0.00025 5.5E-09 67.9 14.3 52 79-130 12-64 (563)
115 PRK12608 transcription termina 97.9 0.00012 2.7E-09 65.7 11.3 103 92-195 120-231 (380)
116 PRK00149 dnaA chromosomal repl 97.9 0.00044 9.5E-09 64.8 15.4 94 104-214 148-254 (450)
117 TIGR02237 recomb_radB DNA repa 97.9 6.2E-05 1.3E-09 62.9 8.7 88 104-195 12-108 (209)
118 PHA00729 NTP-binding motif con 97.9 8.1E-05 1.7E-09 62.4 8.7 36 94-129 7-42 (226)
119 TIGR03346 chaperone_ClpB ATP-d 97.9 8E-05 1.7E-09 75.1 10.1 50 81-130 171-220 (852)
120 cd01123 Rad51_DMC1_radA Rad51_ 97.9 8.8E-05 1.9E-09 63.2 9.1 91 104-195 19-126 (235)
121 PRK12377 putative replication 97.8 0.00016 3.5E-09 61.9 10.3 76 103-196 100-175 (248)
122 TIGR02012 tigrfam_recA protein 97.8 6.9E-05 1.5E-09 66.4 8.1 86 103-195 54-144 (321)
123 CHL00176 ftsH cell division pr 97.8 0.0004 8.7E-09 67.4 13.7 48 82-129 182-241 (638)
124 cd00983 recA RecA is a bacter 97.8 7E-05 1.5E-09 66.4 7.9 84 104-194 55-143 (325)
125 PRK11034 clpA ATP-dependent Cl 97.8 2.2E-05 4.8E-10 77.4 5.2 101 83-196 186-290 (758)
126 PF13177 DNA_pol3_delta2: DNA 97.8 0.00054 1.2E-08 54.9 12.4 111 87-215 1-143 (162)
127 cd01393 recA_like RecA is a b 97.8 0.00018 3.9E-09 60.9 10.0 91 104-195 19-125 (226)
128 PRK09354 recA recombinase A; P 97.8 9E-05 1.9E-09 66.2 8.4 85 104-195 60-149 (349)
129 PF00448 SRP54: SRP54-type pro 97.8 0.00023 4.9E-09 58.9 10.0 88 104-193 1-92 (196)
130 PRK07952 DNA replication prote 97.8 0.00034 7.5E-09 59.7 11.3 90 91-197 84-175 (244)
131 PRK08181 transposase; Validate 97.8 0.00017 3.7E-09 62.5 9.5 97 97-215 101-210 (269)
132 PRK14086 dnaA chromosomal repl 97.8 0.0015 3.2E-08 62.6 16.4 93 105-214 315-420 (617)
133 KOG0744 AAA+-type ATPase [Post 97.8 5.5E-05 1.2E-09 65.6 6.2 84 104-197 177-263 (423)
134 COG0470 HolB ATPase involved i 97.8 0.00032 6.9E-09 62.6 11.5 114 84-214 2-149 (325)
135 PRK07261 topology modulation p 97.8 0.00014 3E-09 58.9 8.0 34 106-139 2-36 (171)
136 PF02562 PhoH: PhoH-like prote 97.7 0.00013 2.7E-09 60.5 7.7 126 87-215 4-157 (205)
137 TIGR03877 thermo_KaiC_1 KaiC d 97.7 0.00038 8.2E-09 59.5 10.8 107 103-214 20-171 (237)
138 TIGR02881 spore_V_K stage V sp 97.7 0.00012 2.7E-09 63.4 7.5 47 83-129 6-67 (261)
139 TIGR02639 ClpA ATP-dependent C 97.7 0.00024 5.2E-09 70.6 10.4 104 84-198 455-567 (731)
140 TIGR01243 CDC48 AAA family ATP 97.7 0.00074 1.6E-08 67.2 13.8 47 83-129 178-237 (733)
141 PRK07399 DNA polymerase III su 97.7 0.0021 4.5E-08 57.2 15.1 48 83-130 4-52 (314)
142 COG0466 Lon ATP-dependent Lon 97.7 0.0006 1.3E-08 65.3 12.1 102 83-198 323-431 (782)
143 PHA02244 ATPase-like protein 97.7 0.00036 7.7E-09 62.6 10.1 45 83-129 96-144 (383)
144 KOG0729 26S proteasome regulat 97.7 0.0012 2.6E-08 56.1 12.5 94 82-196 176-282 (435)
145 cd01120 RecA-like_NTPases RecA 97.7 0.00048 1E-08 54.6 10.1 40 106-147 1-40 (165)
146 PF13207 AAA_17: AAA domain; P 97.7 4.8E-05 1E-09 57.6 3.9 24 106-129 1-24 (121)
147 KOG0741 AAA+-type ATPase [Post 97.7 0.0016 3.5E-08 60.3 14.0 73 103-198 537-612 (744)
148 KOG1514 Origin recognition com 97.6 0.004 8.7E-08 59.6 16.9 180 82-265 395-609 (767)
149 TIGR02640 gas_vesic_GvpN gas v 97.6 0.00054 1.2E-08 59.4 10.6 57 89-152 8-64 (262)
150 COG1484 DnaC DNA replication p 97.6 0.00043 9.3E-09 59.7 9.9 76 103-196 104-179 (254)
151 smart00763 AAA_PrkA PrkA AAA d 97.6 0.0001 2.2E-09 65.9 5.9 47 84-130 52-104 (361)
152 COG1066 Sms Predicted ATP-depe 97.6 0.00043 9.3E-09 62.2 9.7 89 104-198 93-182 (456)
153 PRK06526 transposase; Provisio 97.6 0.00022 4.8E-09 61.4 7.8 93 103-215 97-202 (254)
154 PRK08769 DNA polymerase III su 97.6 0.0018 3.9E-08 57.6 13.5 41 90-130 11-52 (319)
155 PRK05541 adenylylsulfate kinas 97.6 0.00019 4.2E-09 58.2 7.0 37 103-141 6-42 (176)
156 PRK05707 DNA polymerase III su 97.6 0.0015 3.3E-08 58.4 13.2 27 104-130 22-48 (328)
157 PRK06835 DNA replication prote 97.6 0.00065 1.4E-08 60.7 10.8 94 104-214 183-289 (329)
158 PRK04296 thymidine kinase; Pro 97.6 0.00017 3.7E-09 59.4 6.6 106 105-216 3-118 (190)
159 PRK06696 uridine kinase; Valid 97.6 0.00012 2.6E-09 61.9 5.8 44 87-130 2-48 (223)
160 PRK09361 radB DNA repair and r 97.6 0.00035 7.6E-09 59.1 8.6 86 104-194 23-117 (225)
161 KOG2228 Origin recognition com 97.6 0.00085 1.8E-08 58.8 10.8 133 81-215 22-183 (408)
162 PRK09270 nucleoside triphospha 97.6 0.001 2.2E-08 56.5 11.4 30 102-131 31-60 (229)
163 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00037 8E-09 70.3 10.0 108 83-198 565-681 (852)
164 KOG0733 Nuclear AAA ATPase (VC 97.6 0.00078 1.7E-08 63.3 11.0 94 103-217 544-660 (802)
165 TIGR02238 recomb_DMC1 meiotic 97.6 0.00043 9.4E-09 61.4 9.0 92 104-196 96-203 (313)
166 PRK09183 transposase/IS protei 97.6 0.00055 1.2E-08 59.2 9.4 92 104-214 102-206 (259)
167 PRK10865 protein disaggregatio 97.6 0.00051 1.1E-08 69.2 10.4 107 84-198 569-684 (857)
168 PF00154 RecA: recA bacterial 97.5 0.00065 1.4E-08 60.1 9.7 86 104-196 53-143 (322)
169 TIGR01243 CDC48 AAA family ATP 97.5 0.0024 5.1E-08 63.7 14.8 48 83-130 453-513 (733)
170 TIGR01069 mutS2 MutS2 family p 97.5 0.00045 9.6E-09 68.6 9.5 169 103-280 321-522 (771)
171 TIGR03345 VI_ClpV1 type VI sec 97.5 0.00026 5.6E-09 71.1 7.9 108 83-198 566-682 (852)
172 PLN03187 meiotic recombination 97.5 0.00091 2E-08 60.0 10.6 91 104-195 126-232 (344)
173 TIGR03499 FlhF flagellar biosy 97.5 0.00083 1.8E-08 58.9 10.1 88 103-193 193-281 (282)
174 CHL00195 ycf46 Ycf46; Provisio 97.5 0.0015 3.3E-08 61.4 12.4 49 82-130 227-285 (489)
175 cd01394 radB RadB. The archaea 97.5 0.00051 1.1E-08 57.8 8.4 88 104-196 19-115 (218)
176 COG0542 clpA ATP-binding subun 97.5 0.00016 3.4E-09 70.6 5.8 103 82-198 169-276 (786)
177 COG0542 clpA ATP-binding subun 97.5 0.00041 8.8E-09 67.8 8.5 108 83-198 491-607 (786)
178 PF08423 Rad51: Rad51; InterP 97.5 0.00046 1E-08 59.5 8.0 91 104-195 38-144 (256)
179 PRK11034 clpA ATP-dependent Cl 97.5 0.00027 5.9E-09 69.8 7.2 104 84-198 459-571 (758)
180 CHL00095 clpC Clp protease ATP 97.5 0.0005 1.1E-08 69.2 9.1 108 83-198 509-625 (821)
181 KOG0739 AAA+-type ATPase [Post 97.5 0.0018 3.8E-08 56.0 10.9 148 85-253 135-335 (439)
182 TIGR00602 rad24 checkpoint pro 97.5 0.00018 4E-09 69.4 5.5 52 78-129 79-135 (637)
183 PRK06090 DNA polymerase III su 97.5 0.013 2.8E-07 52.1 16.8 40 90-129 10-50 (319)
184 PRK12422 chromosomal replicati 97.5 0.0005 1.1E-08 64.1 8.2 92 104-214 141-245 (445)
185 COG1875 NYN ribonuclease and A 97.5 0.00053 1.2E-08 60.7 7.8 127 85-214 226-388 (436)
186 PF01695 IstB_IS21: IstB-like 97.4 0.0011 2.3E-08 54.0 9.1 75 103-196 46-120 (178)
187 PRK00409 recombination and DNA 97.4 0.0003 6.5E-09 70.0 7.0 159 103-280 326-527 (782)
188 KOG1969 DNA replication checkp 97.4 0.00036 7.8E-09 66.8 7.0 75 103-197 325-400 (877)
189 COG4608 AppF ABC-type oligopep 97.4 0.00053 1.2E-08 58.5 7.3 112 103-218 38-174 (268)
190 CHL00181 cbbX CbbX; Provisiona 97.4 0.0012 2.5E-08 58.0 9.7 26 105-130 60-85 (287)
191 PRK10733 hflB ATP-dependent me 97.4 0.0027 5.9E-08 62.1 12.9 49 82-130 151-211 (644)
192 PRK04328 hypothetical protein; 97.4 0.00097 2.1E-08 57.4 8.8 107 103-214 22-173 (249)
193 TIGR02236 recomb_radA DNA repa 97.4 0.0014 3.1E-08 58.3 10.1 91 104-195 95-203 (310)
194 PLN03186 DNA repair protein RA 97.4 0.0014 2.9E-08 58.9 10.0 91 104-195 123-229 (342)
195 PRK08058 DNA polymerase III su 97.4 0.0035 7.7E-08 56.2 12.6 47 84-130 6-54 (329)
196 PRK14722 flhF flagellar biosyn 97.4 0.0013 2.9E-08 59.5 9.8 90 104-196 137-227 (374)
197 PF10443 RNA12: RNA12 protein; 97.4 0.013 2.8E-07 53.5 16.1 51 88-144 1-52 (431)
198 cd01133 F1-ATPase_beta F1 ATP 97.4 0.0018 3.8E-08 56.1 10.1 94 104-198 69-177 (274)
199 PRK04301 radA DNA repair and r 97.4 0.0013 2.9E-08 58.7 9.7 92 103-195 101-209 (317)
200 PRK00771 signal recognition pa 97.4 0.0012 2.7E-08 61.1 9.7 87 103-193 94-184 (437)
201 TIGR02239 recomb_RAD51 DNA rep 97.4 0.00092 2E-08 59.5 8.6 93 103-196 95-203 (316)
202 cd01121 Sms Sms (bacterial rad 97.4 0.00077 1.7E-08 61.3 8.1 87 104-195 82-169 (372)
203 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.0012 2.6E-08 57.2 8.9 108 103-212 35-174 (259)
204 PRK06067 flagellar accessory p 97.4 0.0019 4.1E-08 55.0 10.1 87 103-194 24-130 (234)
205 cd01131 PilT Pilus retraction 97.4 0.00031 6.8E-09 58.2 5.1 104 105-216 2-111 (198)
206 PRK08939 primosomal protein Dn 97.4 0.0016 3.5E-08 57.7 9.9 89 87-194 135-227 (306)
207 PF00158 Sigma54_activat: Sigm 97.3 0.0015 3.2E-08 52.6 8.8 44 85-128 1-46 (168)
208 TIGR02880 cbbX_cfxQ probable R 97.3 0.0017 3.7E-08 57.0 9.8 26 106-131 60-85 (284)
209 PF14532 Sigma54_activ_2: Sigm 97.3 0.00026 5.7E-09 55.0 4.3 45 86-130 1-47 (138)
210 COG1102 Cmk Cytidylate kinase 97.3 0.0006 1.3E-08 53.5 5.9 46 106-164 2-47 (179)
211 TIGR03881 KaiC_arch_4 KaiC dom 97.3 0.0035 7.5E-08 53.1 11.2 107 103-214 19-166 (229)
212 COG1223 Predicted ATPase (AAA+ 97.3 0.0027 5.9E-08 53.8 10.1 94 82-196 120-222 (368)
213 cd03115 SRP The signal recogni 97.3 0.0022 4.7E-08 51.8 9.5 86 106-194 2-92 (173)
214 PRK09519 recA DNA recombinatio 97.3 0.0012 2.6E-08 64.9 9.3 84 104-194 60-148 (790)
215 KOG0735 AAA+-type ATPase [Post 97.3 0.0014 3E-08 62.7 9.2 74 104-196 431-506 (952)
216 smart00534 MUTSac ATPase domai 97.3 0.00057 1.2E-08 56.0 5.9 21 106-126 1-21 (185)
217 PRK11889 flhF flagellar biosyn 97.3 0.0023 5E-08 58.0 10.1 89 103-193 240-329 (436)
218 KOG0731 AAA+-type ATPase conta 97.3 0.0043 9.3E-08 60.5 12.5 51 81-131 309-371 (774)
219 PRK06921 hypothetical protein; 97.3 0.0019 4.1E-08 56.1 9.3 71 103-193 116-186 (266)
220 PLN00020 ribulose bisphosphate 97.3 0.0022 4.7E-08 57.5 9.8 30 102-131 146-175 (413)
221 PRK08233 hypothetical protein; 97.3 0.0013 2.8E-08 53.5 7.9 26 104-129 3-28 (182)
222 COG1136 SalX ABC-type antimicr 97.3 0.0016 3.5E-08 54.6 8.5 121 103-230 30-216 (226)
223 PRK14974 cell division protein 97.3 0.0052 1.1E-07 55.1 12.3 90 103-196 139-234 (336)
224 PTZ00035 Rad51 protein; Provis 97.3 0.0022 4.9E-08 57.6 10.0 91 104-195 118-224 (337)
225 PRK12726 flagellar biosynthesi 97.3 0.0027 5.9E-08 57.3 10.3 91 103-195 205-296 (407)
226 COG1618 Predicted nucleotide k 97.3 0.0004 8.6E-09 54.5 4.4 36 104-140 5-41 (179)
227 PRK06871 DNA polymerase III su 97.3 0.0087 1.9E-07 53.4 13.4 40 91-130 10-50 (325)
228 PRK08533 flagellar accessory p 97.3 0.0034 7.4E-08 53.3 10.4 88 104-196 24-129 (230)
229 cd03238 ABC_UvrA The excision 97.3 0.0025 5.4E-08 51.7 9.1 115 103-230 20-162 (176)
230 PRK15455 PrkA family serine pr 97.2 0.00046 1E-08 65.2 5.4 48 83-130 76-129 (644)
231 PRK12723 flagellar biosynthesi 97.2 0.0045 9.8E-08 56.5 11.5 90 103-195 173-265 (388)
232 cd01124 KaiC KaiC is a circadi 97.2 0.0013 2.8E-08 53.7 7.5 105 106-215 1-141 (187)
233 PRK06547 hypothetical protein; 97.2 0.00056 1.2E-08 55.3 5.1 35 95-129 6-40 (172)
234 cd03214 ABC_Iron-Siderophores_ 97.2 0.0037 8E-08 50.9 10.0 110 103-216 24-160 (180)
235 COG2607 Predicted ATPase (AAA+ 97.2 0.0086 1.9E-07 50.3 11.9 51 81-131 58-112 (287)
236 PRK10787 DNA-binding ATP-depen 97.2 0.0043 9.4E-08 61.9 12.0 47 83-129 322-374 (784)
237 COG0468 RecA RecA/RadA recombi 97.2 0.0038 8.3E-08 54.2 10.2 92 103-197 59-154 (279)
238 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.0013 2.8E-08 53.6 7.1 24 106-129 1-24 (183)
239 TIGR00763 lon ATP-dependent pr 97.2 0.0014 3.1E-08 65.5 8.7 47 84-130 321-373 (775)
240 TIGR00554 panK_bact pantothena 97.2 0.003 6.5E-08 55.4 9.6 42 88-129 46-87 (290)
241 PRK13531 regulatory ATPase Rav 97.2 0.00064 1.4E-08 63.2 5.7 51 83-135 20-70 (498)
242 PF06745 KaiC: KaiC; InterPro 97.2 0.00067 1.5E-08 57.4 5.5 106 103-212 18-159 (226)
243 PF07728 AAA_5: AAA domain (dy 97.2 0.0011 2.4E-08 51.5 6.3 42 107-153 2-43 (139)
244 COG1120 FepC ABC-type cobalami 97.2 0.0039 8.4E-08 53.4 10.0 125 103-230 27-213 (258)
245 PRK12724 flagellar biosynthesi 97.2 0.0022 4.8E-08 58.7 9.0 26 104-129 223-248 (432)
246 cd03283 ABC_MutS-like MutS-lik 97.2 0.0053 1.1E-07 50.9 10.5 24 105-128 26-49 (199)
247 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0025 5.3E-08 51.8 8.4 104 103-230 24-146 (177)
248 PRK05973 replicative DNA helic 97.2 0.0028 6.2E-08 53.8 9.0 143 49-215 25-194 (237)
249 cd02025 PanK Pantothenate kina 97.2 0.0032 7E-08 53.1 9.3 40 106-145 1-40 (220)
250 PF13238 AAA_18: AAA domain; P 97.2 0.00042 9.1E-09 52.7 3.6 22 107-128 1-22 (129)
251 cd03216 ABC_Carb_Monos_I This 97.2 0.00093 2E-08 53.6 5.7 106 103-216 25-144 (163)
252 COG3267 ExeA Type II secretory 97.1 0.042 9.1E-07 46.6 15.5 94 101-198 48-145 (269)
253 TIGR00959 ffh signal recogniti 97.1 0.0039 8.4E-08 57.7 10.3 27 103-129 98-124 (428)
254 PRK07993 DNA polymerase III su 97.1 0.011 2.4E-07 53.1 12.9 41 90-130 9-50 (334)
255 PF13481 AAA_25: AAA domain; P 97.1 0.0046 1E-07 50.7 9.9 91 105-197 33-154 (193)
256 COG1373 Predicted ATPase (AAA+ 97.1 0.0031 6.6E-08 58.1 9.6 106 87-217 21-134 (398)
257 cd03247 ABCC_cytochrome_bd The 97.1 0.0029 6.3E-08 51.4 8.5 108 103-217 27-160 (178)
258 COG0593 DnaA ATPase involved i 97.1 0.0013 2.7E-08 60.0 6.8 93 103-215 112-219 (408)
259 TIGR00064 ftsY signal recognit 97.1 0.0062 1.3E-07 53.1 10.9 90 102-194 70-164 (272)
260 PF00485 PRK: Phosphoribulokin 97.1 0.0005 1.1E-08 56.8 3.9 26 106-131 1-26 (194)
261 PRK10867 signal recognition pa 97.1 0.0039 8.5E-08 57.7 10.1 29 103-131 99-127 (433)
262 cd03246 ABCC_Protease_Secretio 97.1 0.0028 6E-08 51.3 8.0 107 103-217 27-159 (173)
263 PRK12727 flagellar biosynthesi 97.1 0.0032 6.9E-08 59.3 9.2 89 103-194 349-438 (559)
264 cd03223 ABCD_peroxisomal_ALDP 97.1 0.0038 8.2E-08 50.2 8.7 106 103-216 26-150 (166)
265 KOG0727 26S proteasome regulat 97.1 0.0077 1.7E-07 50.9 10.4 49 83-131 155-216 (408)
266 PF13671 AAA_33: AAA domain; P 97.1 0.00059 1.3E-08 53.1 3.7 24 106-129 1-24 (143)
267 PRK05703 flhF flagellar biosyn 97.1 0.0052 1.1E-07 57.0 10.5 86 104-193 221-308 (424)
268 COG1121 ZnuC ABC-type Mn/Zn tr 97.1 0.0034 7.3E-08 53.5 8.4 124 104-230 30-213 (254)
269 KOG0743 AAA+-type ATPase [Post 97.1 0.075 1.6E-06 48.7 17.4 25 105-129 236-260 (457)
270 cd02027 APSK Adenosine 5'-phos 97.1 0.0027 5.8E-08 50.1 7.4 25 106-130 1-25 (149)
271 TIGR02858 spore_III_AA stage I 97.1 0.0033 7.2E-08 54.6 8.6 112 101-216 108-231 (270)
272 PRK10463 hydrogenase nickel in 97.1 0.0056 1.2E-07 53.4 9.9 37 95-131 95-131 (290)
273 cd01125 repA Hexameric Replica 97.1 0.0044 9.6E-08 52.9 9.3 110 106-215 3-160 (239)
274 COG0396 sufC Cysteine desulfur 97.1 0.0042 9E-08 51.8 8.5 78 170-249 149-239 (251)
275 KOG0728 26S proteasome regulat 97.1 0.021 4.5E-07 48.3 12.7 53 85-144 149-214 (404)
276 PRK07667 uridine kinase; Provi 97.0 0.0012 2.5E-08 54.6 5.3 38 93-130 4-43 (193)
277 TIGR01425 SRP54_euk signal rec 97.0 0.0084 1.8E-07 55.3 11.3 29 103-131 99-127 (429)
278 cd03228 ABCC_MRP_Like The MRP 97.0 0.0027 5.9E-08 51.2 7.4 107 103-217 27-158 (171)
279 TIGR02655 circ_KaiC circadian 97.0 0.0031 6.8E-08 59.6 8.8 107 103-214 20-167 (484)
280 KOG0726 26S proteasome regulat 97.0 0.0093 2E-07 51.5 10.6 51 81-131 183-246 (440)
281 cd01122 GP4d_helicase GP4d_hel 97.0 0.0096 2.1E-07 51.8 11.2 51 104-157 30-80 (271)
282 PRK11823 DNA repair protein Ra 97.0 0.0019 4E-08 60.4 7.0 83 104-195 80-167 (446)
283 KOG2004 Mitochondrial ATP-depe 97.0 0.0019 4.1E-08 61.9 7.0 100 83-196 411-517 (906)
284 cd03285 ABC_MSH2_euk MutS2 hom 97.0 0.0012 2.6E-08 55.8 5.3 152 103-264 29-218 (222)
285 cd01135 V_A-ATPase_B V/A-type 97.0 0.0062 1.3E-07 52.7 9.6 95 104-198 69-180 (276)
286 PRK06762 hypothetical protein; 97.0 0.0007 1.5E-08 54.3 3.7 25 104-128 2-26 (166)
287 PRK05480 uridine/cytidine kina 97.0 0.00076 1.6E-08 56.4 4.0 27 102-128 4-30 (209)
288 PTZ00494 tuzin-like protein; P 97.0 0.04 8.6E-07 50.7 14.8 79 79-165 367-448 (664)
289 TIGR02655 circ_KaiC circadian 97.0 0.0033 7.1E-08 59.5 8.5 108 103-215 262-400 (484)
290 COG0563 Adk Adenylate kinase a 97.0 0.0018 4E-08 52.6 6.0 24 106-129 2-25 (178)
291 PRK00889 adenylylsulfate kinas 97.0 0.0034 7.4E-08 50.8 7.6 28 103-130 3-30 (175)
292 COG1126 GlnQ ABC-type polar am 97.0 0.0046 9.9E-08 51.1 8.1 112 103-218 27-200 (240)
293 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.0013 2.7E-08 55.2 5.1 24 104-127 29-52 (213)
294 COG2884 FtsE Predicted ATPase 97.0 0.0075 1.6E-07 48.8 9.2 35 103-140 27-61 (223)
295 cd02019 NK Nucleoside/nucleoti 97.0 0.00074 1.6E-08 45.7 3.1 23 106-128 1-23 (69)
296 KOG0652 26S proteasome regulat 97.0 0.013 2.9E-07 49.7 10.9 51 81-131 169-232 (424)
297 PRK14723 flhF flagellar biosyn 97.0 0.011 2.3E-07 58.3 11.9 88 104-194 185-273 (767)
298 KOG1051 Chaperone HSP104 and r 96.9 0.0077 1.7E-07 59.9 10.9 103 85-198 564-674 (898)
299 TIGR00416 sms DNA repair prote 96.9 0.003 6.4E-08 59.1 7.7 83 104-195 94-181 (454)
300 PRK05917 DNA polymerase III su 96.9 0.042 9.2E-07 48.1 14.3 145 91-253 5-175 (290)
301 PTZ00301 uridine kinase; Provi 96.9 0.0009 2E-08 55.9 3.8 26 104-129 3-28 (210)
302 COG1419 FlhF Flagellar GTP-bin 96.9 0.015 3.3E-07 52.7 11.6 101 90-194 185-291 (407)
303 PF01583 APS_kinase: Adenylyls 96.9 0.0019 4.1E-08 51.1 5.3 36 104-141 2-37 (156)
304 KOG0736 Peroxisome assembly fa 96.9 0.011 2.4E-07 57.3 11.1 95 83-198 672-778 (953)
305 cd03284 ABC_MutS1 MutS1 homolo 96.9 0.0056 1.2E-07 51.5 8.4 22 105-126 31-52 (216)
306 PRK13765 ATP-dependent proteas 96.9 0.0026 5.7E-08 61.7 7.2 78 80-161 28-105 (637)
307 PRK03839 putative kinase; Prov 96.9 0.00093 2E-08 54.4 3.5 25 106-130 2-26 (180)
308 TIGR00235 udk uridine kinase. 96.9 0.001 2.2E-08 55.5 3.8 28 102-129 4-31 (207)
309 cd03230 ABC_DR_subfamily_A Thi 96.9 0.0045 9.8E-08 50.0 7.5 108 103-217 25-158 (173)
310 TIGR01360 aden_kin_iso1 adenyl 96.9 0.0011 2.3E-08 54.3 3.8 26 103-128 2-27 (188)
311 cd00984 DnaB_C DnaB helicase C 96.9 0.016 3.5E-07 49.4 11.2 40 104-144 13-52 (242)
312 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.0028 6.2E-08 50.3 6.1 107 104-217 25-143 (157)
313 PF03308 ArgK: ArgK protein; 96.9 0.0033 7.2E-08 53.5 6.7 59 91-149 14-74 (266)
314 KOG0651 26S proteasome regulat 96.8 0.0057 1.2E-07 53.2 7.9 94 103-217 165-284 (388)
315 KOG1532 GTPase XAB1, interacts 96.8 0.0016 3.4E-08 55.5 4.5 63 103-165 18-89 (366)
316 PRK14721 flhF flagellar biosyn 96.8 0.014 3E-07 53.8 11.0 62 103-164 190-252 (420)
317 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.0054 1.2E-07 48.0 7.3 96 103-217 25-130 (144)
318 PRK05342 clpX ATP-dependent pr 96.8 0.004 8.7E-08 57.4 7.5 47 83-129 71-133 (412)
319 PRK09302 circadian clock prote 96.8 0.0045 9.8E-08 59.0 8.2 108 103-214 30-177 (509)
320 COG1703 ArgK Putative periplas 96.8 0.003 6.5E-08 54.6 6.1 60 93-152 38-99 (323)
321 TIGR00764 lon_rel lon-related 96.8 0.0043 9.3E-08 60.2 7.9 49 81-131 16-64 (608)
322 KOG0735 AAA+-type ATPase [Post 96.8 0.0089 1.9E-07 57.5 9.6 94 84-198 668-774 (952)
323 COG2812 DnaX DNA polymerase II 96.8 0.0041 8.8E-08 58.5 7.4 53 79-131 12-65 (515)
324 cd00544 CobU Adenosylcobinamid 96.8 0.0072 1.6E-07 48.7 7.9 81 106-193 1-82 (169)
325 PRK00131 aroK shikimate kinase 96.8 0.0014 3.1E-08 52.7 3.9 27 103-129 3-29 (175)
326 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0031 6.8E-08 48.4 5.4 41 90-130 6-48 (133)
327 PRK04040 adenylate kinase; Pro 96.8 0.0014 3E-08 53.9 3.8 26 104-129 2-27 (188)
328 cd03229 ABC_Class3 This class 96.8 0.0046 9.9E-08 50.3 6.8 27 103-129 25-51 (178)
329 COG1116 TauB ABC-type nitrate/ 96.8 0.0037 8E-08 52.8 6.3 112 103-216 28-193 (248)
330 KOG0730 AAA+-type ATPase [Post 96.8 0.0042 9.1E-08 59.1 7.2 48 84-131 435-495 (693)
331 PLN02165 adenylate isopentenyl 96.8 0.0019 4.1E-08 57.4 4.6 30 100-129 39-68 (334)
332 PRK12597 F0F1 ATP synthase sub 96.8 0.0094 2E-07 55.5 9.3 91 104-195 143-248 (461)
333 PRK00625 shikimate kinase; Pro 96.7 0.0013 2.9E-08 53.2 3.3 24 106-129 2-25 (173)
334 PF08433 KTI12: Chromatin asso 96.7 0.0058 1.3E-07 53.1 7.5 26 105-130 2-27 (270)
335 PRK06964 DNA polymerase III su 96.7 0.087 1.9E-06 47.4 15.2 37 93-130 11-47 (342)
336 PF13479 AAA_24: AAA domain 96.7 0.0078 1.7E-07 50.5 8.1 20 105-124 4-23 (213)
337 COG3910 Predicted ATPase [Gene 96.7 0.023 5E-07 46.0 10.1 124 103-230 36-202 (233)
338 PRK14529 adenylate kinase; Pro 96.7 0.0059 1.3E-07 51.4 7.2 81 107-193 3-85 (223)
339 PRK05439 pantothenate kinase; 96.7 0.016 3.4E-07 51.3 10.2 28 102-129 84-111 (311)
340 TIGR00390 hslU ATP-dependent p 96.7 0.0068 1.5E-07 55.5 8.0 49 83-131 12-74 (441)
341 PRK11608 pspF phage shock prot 96.7 0.0065 1.4E-07 54.4 7.9 46 83-128 6-53 (326)
342 PF03205 MobB: Molybdopterin g 96.7 0.0038 8.3E-08 48.6 5.6 39 105-144 1-39 (140)
343 COG1131 CcmA ABC-type multidru 96.7 0.014 3.1E-07 51.4 9.9 124 104-230 31-211 (293)
344 COG4133 CcmA ABC-type transpor 96.7 0.021 4.6E-07 46.2 9.8 35 104-140 28-62 (209)
345 TIGR01420 pilT_fam pilus retra 96.7 0.0031 6.6E-08 57.0 5.8 107 103-216 121-232 (343)
346 TIGR01650 PD_CobS cobaltochela 96.7 0.0072 1.6E-07 53.6 7.8 60 82-148 44-103 (327)
347 KOG3347 Predicted nucleotide k 96.7 0.0036 7.8E-08 48.5 5.1 70 104-183 7-76 (176)
348 CHL00206 ycf2 Ycf2; Provisiona 96.7 0.024 5.3E-07 60.5 12.6 29 103-131 1629-1657(2281)
349 COG0488 Uup ATPase components 96.7 0.012 2.6E-07 56.0 9.8 115 103-218 347-500 (530)
350 PF00910 RNA_helicase: RNA hel 96.7 0.0014 2.9E-08 48.6 2.8 24 107-130 1-24 (107)
351 PRK15429 formate hydrogenlyase 96.7 0.0092 2E-07 59.1 9.4 61 82-144 375-437 (686)
352 PRK06995 flhF flagellar biosyn 96.7 0.015 3.2E-07 54.6 10.1 60 104-163 256-316 (484)
353 COG0572 Udk Uridine kinase [Nu 96.7 0.0017 3.8E-08 53.9 3.6 29 103-131 7-35 (218)
354 COG0541 Ffh Signal recognition 96.7 0.031 6.8E-07 51.0 11.7 59 103-163 99-158 (451)
355 PF13086 AAA_11: AAA domain; P 96.7 0.0045 9.8E-08 52.1 6.3 65 91-157 6-75 (236)
356 COG1428 Deoxynucleoside kinase 96.7 0.0039 8.5E-08 51.3 5.5 46 104-154 4-49 (216)
357 PRK13543 cytochrome c biogenes 96.7 0.016 3.5E-07 48.6 9.5 27 103-129 36-62 (214)
358 cd03233 ABC_PDR_domain1 The pl 96.7 0.022 4.7E-07 47.3 10.2 27 103-129 32-58 (202)
359 cd03232 ABC_PDR_domain2 The pl 96.7 0.0079 1.7E-07 49.5 7.4 25 103-127 32-56 (192)
360 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.015 3.2E-07 46.2 8.6 109 105-215 3-139 (159)
361 cd03243 ABC_MutS_homologs The 96.7 0.0016 3.4E-08 54.2 3.2 23 105-127 30-52 (202)
362 PRK13407 bchI magnesium chelat 96.6 0.0033 7.1E-08 56.3 5.4 50 79-128 4-53 (334)
363 TIGR02902 spore_lonB ATP-depen 96.6 0.0027 5.7E-08 60.7 5.1 50 80-129 62-111 (531)
364 PLN02924 thymidylate kinase 96.6 0.011 2.3E-07 49.9 8.1 53 104-157 16-68 (220)
365 COG0465 HflB ATP-dependent Zn 96.6 0.03 6.5E-07 53.5 11.9 51 81-131 148-210 (596)
366 PF02456 Adeno_IVa2: Adenoviru 96.6 0.04 8.6E-07 48.0 11.5 159 104-263 87-298 (369)
367 cd02023 UMPK Uridine monophosp 96.6 0.0015 3.2E-08 54.1 2.9 23 106-128 1-23 (198)
368 TIGR02322 phosphon_PhnN phosph 96.6 0.0018 4E-08 52.6 3.4 25 105-129 2-26 (179)
369 TIGR02030 BchI-ChlI magnesium 96.6 0.004 8.7E-08 55.8 5.8 48 81-128 2-49 (337)
370 COG0467 RAD55 RecA-superfamily 96.6 0.0034 7.5E-08 54.3 5.3 88 103-195 22-135 (260)
371 cd00227 CPT Chloramphenicol (C 96.6 0.0019 4.2E-08 52.3 3.5 25 105-129 3-27 (175)
372 COG0714 MoxR-like ATPases [Gen 96.6 0.0061 1.3E-07 54.7 7.0 64 84-154 25-88 (329)
373 PRK06217 hypothetical protein; 96.6 0.0017 3.7E-08 53.1 3.1 34 106-140 3-38 (183)
374 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.0034 7.4E-08 52.1 5.0 21 105-125 29-49 (200)
375 cd02021 GntK Gluconate kinase 96.6 0.0017 3.7E-08 51.1 2.9 23 106-128 1-23 (150)
376 TIGR03305 alt_F1F0_F1_bet alte 96.6 0.015 3.3E-07 53.9 9.5 92 104-196 138-244 (449)
377 PF07726 AAA_3: ATPase family 96.6 0.0022 4.9E-08 48.6 3.4 25 107-131 2-26 (131)
378 cd02020 CMPK Cytidine monophos 96.6 0.0018 4E-08 50.5 3.1 24 106-129 1-24 (147)
379 COG2274 SunT ABC-type bacterio 96.6 0.018 3.9E-07 56.8 10.5 28 102-129 497-524 (709)
380 COG3598 RepA RecA-family ATPas 96.6 0.012 2.6E-07 51.5 8.1 91 105-195 90-205 (402)
381 PF03215 Rad17: Rad17 cell cyc 96.6 0.0043 9.3E-08 58.8 5.9 60 79-142 15-79 (519)
382 COG4618 ArpD ABC-type protease 96.6 0.0072 1.6E-07 56.0 7.0 25 104-128 362-386 (580)
383 PRK09302 circadian clock prote 96.6 0.02 4.4E-07 54.6 10.5 106 104-214 273-409 (509)
384 cd02028 UMPK_like Uridine mono 96.6 0.0029 6.4E-08 51.5 4.2 25 106-130 1-25 (179)
385 KOG0738 AAA+-type ATPase [Post 96.6 0.0051 1.1E-07 55.1 5.8 29 103-131 244-272 (491)
386 CHL00081 chlI Mg-protoporyphyr 96.6 0.004 8.7E-08 56.0 5.3 51 80-130 14-64 (350)
387 TIGR00073 hypB hydrogenase acc 96.6 0.0028 6.1E-08 52.9 4.1 32 98-129 16-47 (207)
388 cd02024 NRK1 Nicotinamide ribo 96.6 0.0019 4.1E-08 52.9 3.0 23 106-128 1-23 (187)
389 cd03282 ABC_MSH4_euk MutS4 hom 96.5 0.0051 1.1E-07 51.2 5.6 109 104-218 29-155 (204)
390 PF13245 AAA_19: Part of AAA d 96.5 0.0089 1.9E-07 41.2 5.8 26 103-128 9-34 (76)
391 PTZ00088 adenylate kinase 1; P 96.5 0.0027 5.8E-08 53.8 3.9 24 106-129 8-31 (229)
392 PRK09280 F0F1 ATP synthase sub 96.5 0.023 5E-07 52.8 10.1 92 104-196 144-250 (463)
393 PRK12678 transcription termina 96.5 0.0054 1.2E-07 58.0 6.0 91 104-195 416-514 (672)
394 cd03217 ABC_FeS_Assembly ABC-t 96.5 0.0096 2.1E-07 49.4 7.1 25 103-127 25-49 (200)
395 PRK13537 nodulation ABC transp 96.5 0.017 3.7E-07 51.3 9.0 27 103-129 32-58 (306)
396 TIGR03880 KaiC_arch_3 KaiC dom 96.5 0.018 4E-07 48.6 8.9 106 104-214 16-154 (224)
397 PF12775 AAA_7: P-loop contain 96.5 0.0015 3.3E-08 56.8 2.3 35 94-129 24-58 (272)
398 PF00625 Guanylate_kin: Guanyl 96.5 0.004 8.6E-08 50.9 4.6 37 104-142 2-38 (183)
399 PRK10751 molybdopterin-guanine 96.5 0.0031 6.8E-08 50.8 3.8 29 103-131 5-33 (173)
400 PRK13947 shikimate kinase; Pro 96.5 0.0023 5E-08 51.5 3.1 25 106-130 3-27 (171)
401 PRK10416 signal recognition pa 96.5 0.072 1.6E-06 47.5 12.8 29 103-131 113-141 (318)
402 PRK14527 adenylate kinase; Pro 96.5 0.003 6.6E-08 52.0 3.8 29 102-130 4-32 (191)
403 PRK05201 hslU ATP-dependent pr 96.5 0.012 2.6E-07 53.9 7.9 48 83-130 15-76 (443)
404 PF00006 ATP-synt_ab: ATP synt 96.5 0.014 3.1E-07 48.8 7.9 87 105-196 16-117 (215)
405 COG3640 CooC CO dehydrogenase 96.5 0.0075 1.6E-07 50.4 5.9 42 106-148 2-43 (255)
406 PF05970 PIF1: PIF1-like helic 96.5 0.0081 1.8E-07 54.7 6.8 41 91-131 9-49 (364)
407 PF03193 DUF258: Protein of un 96.5 0.005 1.1E-07 48.9 4.8 35 91-128 25-59 (161)
408 TIGR03522 GldA_ABC_ATP gliding 96.5 0.021 4.6E-07 50.5 9.3 26 103-128 27-52 (301)
409 PRK14530 adenylate kinase; Pro 96.5 0.0028 6.1E-08 53.2 3.6 25 105-129 4-28 (215)
410 COG2401 ABC-type ATPase fused 96.4 0.0051 1.1E-07 55.6 5.2 139 86-226 374-579 (593)
411 PRK13949 shikimate kinase; Pro 96.4 0.0027 5.8E-08 51.2 3.1 25 105-129 2-26 (169)
412 PRK05022 anaerobic nitric oxid 96.4 0.018 3.8E-07 55.0 9.2 62 82-145 186-249 (509)
413 cd03213 ABCG_EPDR ABCG transpo 96.4 0.021 4.5E-07 47.1 8.5 26 103-128 34-59 (194)
414 PRK04132 replication factor C 96.4 0.069 1.5E-06 53.5 13.3 128 111-255 571-727 (846)
415 PRK06731 flhF flagellar biosyn 96.4 0.037 8E-07 48.1 10.2 91 103-196 74-166 (270)
416 TIGR03263 guanyl_kin guanylate 96.4 0.0026 5.6E-08 51.7 3.0 24 105-128 2-25 (180)
417 PRK03846 adenylylsulfate kinas 96.4 0.006 1.3E-07 50.5 5.1 29 102-130 22-50 (198)
418 COG0464 SpoVK ATPases of the A 96.4 0.0059 1.3E-07 58.0 5.7 29 103-131 275-303 (494)
419 PF08298 AAA_PrkA: PrkA AAA do 96.4 0.0071 1.5E-07 53.9 5.8 94 83-182 61-167 (358)
420 cd00464 SK Shikimate kinase (S 96.4 0.0032 6.9E-08 49.6 3.3 23 107-129 2-24 (154)
421 TIGR02868 CydC thiol reductant 96.4 0.025 5.4E-07 54.3 10.0 28 102-129 359-386 (529)
422 PF03266 NTPase_1: NTPase; In 96.4 0.0048 1E-07 49.7 4.3 24 107-130 2-25 (168)
423 cd01672 TMPK Thymidine monopho 96.4 0.013 2.8E-07 48.1 7.0 25 106-130 2-26 (200)
424 TIGR01313 therm_gnt_kin carboh 96.4 0.0025 5.3E-08 51.0 2.6 22 107-128 1-22 (163)
425 TIGR00382 clpX endopeptidase C 96.4 0.016 3.4E-07 53.4 8.1 47 83-129 77-141 (413)
426 KOG0924 mRNA splicing factor A 96.3 0.019 4.1E-07 55.0 8.5 129 94-230 363-528 (1042)
427 PRK00300 gmk guanylate kinase; 96.3 0.0038 8.2E-08 51.9 3.7 27 103-129 4-30 (205)
428 COG1117 PstB ABC-type phosphat 96.3 0.046 9.9E-07 45.3 9.7 45 83-129 14-58 (253)
429 cd03227 ABC_Class2 ABC-type Cl 96.3 0.04 8.6E-07 44.0 9.4 23 105-127 22-44 (162)
430 COG1124 DppF ABC-type dipeptid 96.3 0.004 8.7E-08 52.3 3.7 115 103-218 32-206 (252)
431 TIGR00041 DTMP_kinase thymidyl 96.3 0.014 3E-07 48.0 7.0 27 105-131 4-30 (195)
432 PF07693 KAP_NTPase: KAP famil 96.3 0.021 4.5E-07 51.0 8.6 44 88-131 1-47 (325)
433 PF08477 Miro: Miro-like prote 96.3 0.0038 8.3E-08 46.8 3.3 24 107-130 2-25 (119)
434 PF06309 Torsin: Torsin; Inte 96.3 0.011 2.4E-07 44.7 5.6 45 84-128 26-77 (127)
435 PRK08927 fliI flagellum-specif 96.3 0.031 6.7E-07 51.8 9.6 90 103-196 157-260 (442)
436 PRK05800 cobU adenosylcobinami 96.3 0.026 5.6E-07 45.5 8.1 81 105-193 2-85 (170)
437 PRK13536 nodulation factor exp 96.3 0.029 6.3E-07 50.5 9.3 27 103-129 66-92 (340)
438 PRK12339 2-phosphoglycerate ki 96.3 0.0043 9.4E-08 51.3 3.6 25 104-128 3-27 (197)
439 PRK06002 fliI flagellum-specif 96.3 0.011 2.4E-07 54.8 6.5 90 104-196 165-266 (450)
440 TIGR01039 atpD ATP synthase, F 96.3 0.042 9.2E-07 51.0 10.3 93 104-197 143-250 (461)
441 PRK05057 aroK shikimate kinase 96.3 0.0045 9.9E-08 50.0 3.7 26 104-129 4-29 (172)
442 PRK08972 fliI flagellum-specif 96.3 0.023 5E-07 52.5 8.5 90 103-196 161-264 (444)
443 PRK13545 tagH teichoic acids e 96.3 0.037 8E-07 52.4 10.0 122 103-230 49-217 (549)
444 PRK13975 thymidylate kinase; P 96.3 0.0044 9.5E-08 51.1 3.6 26 105-130 3-28 (196)
445 PRK08149 ATP synthase SpaL; Va 96.2 0.02 4.4E-07 52.8 8.1 91 103-197 150-254 (428)
446 PRK10078 ribose 1,5-bisphospho 96.2 0.0037 8E-08 51.2 3.0 24 105-128 3-26 (186)
447 PRK08699 DNA polymerase III su 96.2 0.1 2.2E-06 46.8 12.3 36 93-129 11-46 (325)
448 cd00071 GMPK Guanosine monopho 96.2 0.0036 7.7E-08 48.6 2.7 23 106-128 1-23 (137)
449 PRK14737 gmk guanylate kinase; 96.2 0.0045 9.8E-08 50.7 3.4 26 103-128 3-28 (186)
450 PRK05537 bifunctional sulfate 96.2 0.0091 2E-07 57.5 5.9 49 82-130 368-418 (568)
451 PRK13948 shikimate kinase; Pro 96.2 0.005 1.1E-07 50.2 3.6 27 103-129 9-35 (182)
452 COG3840 ThiQ ABC-type thiamine 96.2 0.049 1.1E-06 44.0 8.9 36 103-141 24-59 (231)
453 PF02374 ArsA_ATPase: Anion-tr 96.2 0.012 2.5E-07 52.3 6.1 38 105-144 2-39 (305)
454 PLN02200 adenylate kinase fami 96.2 0.0052 1.1E-07 52.3 3.7 26 103-128 42-67 (234)
455 cd03287 ABC_MSH3_euk MutS3 hom 96.2 0.0086 1.9E-07 50.5 5.0 24 103-126 30-53 (222)
456 cd01132 F1_ATPase_alpha F1 ATP 96.2 0.017 3.7E-07 50.0 6.9 90 104-197 69-174 (274)
457 PRK15439 autoinducer 2 ABC tra 96.2 0.047 1E-06 52.1 10.7 114 103-217 36-203 (510)
458 PRK13946 shikimate kinase; Pro 96.2 0.0051 1.1E-07 50.3 3.6 26 104-129 10-35 (184)
459 COG0003 ArsA Predicted ATPase 96.2 0.013 2.8E-07 52.1 6.2 42 104-147 2-43 (322)
460 PF03029 ATP_bind_1: Conserved 96.2 0.0071 1.5E-07 51.6 4.5 33 109-143 1-33 (238)
461 PRK09435 membrane ATPase/prote 96.2 0.018 3.9E-07 51.5 7.1 39 93-131 43-83 (332)
462 TIGR00176 mobB molybdopterin-g 96.2 0.0049 1.1E-07 48.9 3.2 33 106-139 1-33 (155)
463 PF13604 AAA_30: AAA domain; P 96.2 0.013 2.7E-07 48.5 5.8 35 97-131 11-45 (196)
464 TIGR01041 ATP_syn_B_arch ATP s 96.1 0.031 6.8E-07 52.1 8.9 93 104-196 141-250 (458)
465 TIGR03574 selen_PSTK L-seryl-t 96.1 0.0045 9.8E-08 53.2 3.2 25 106-130 1-25 (249)
466 cd01129 PulE-GspE PulE/GspE Th 96.1 0.012 2.7E-07 51.0 5.8 115 90-216 67-186 (264)
467 PRK06620 hypothetical protein; 96.1 0.0048 1E-07 51.8 3.1 24 105-128 45-68 (214)
468 PTZ00185 ATPase alpha subunit; 96.1 0.078 1.7E-06 49.8 11.1 93 104-196 189-301 (574)
469 PRK04182 cytidylate kinase; Pr 96.1 0.0055 1.2E-07 49.6 3.4 24 106-129 2-25 (180)
470 PRK13695 putative NTPase; Prov 96.1 0.0094 2E-07 48.2 4.7 34 106-140 2-35 (174)
471 COG0488 Uup ATPase components 96.1 0.026 5.6E-07 53.7 8.3 56 171-230 159-224 (530)
472 cd02029 PRK_like Phosphoribulo 96.1 0.024 5.2E-07 48.8 7.2 26 106-131 1-26 (277)
473 COG1763 MobB Molybdopterin-gua 96.1 0.0068 1.5E-07 48.2 3.7 28 104-131 2-29 (161)
474 cd00820 PEPCK_HprK Phosphoenol 96.1 0.0056 1.2E-07 45.1 3.0 22 104-125 15-36 (107)
475 TIGR01040 V-ATPase_V1_B V-type 96.1 0.025 5.5E-07 52.4 7.8 93 104-196 141-259 (466)
476 PRK14532 adenylate kinase; Pro 96.1 0.0052 1.1E-07 50.3 3.1 22 107-128 3-24 (188)
477 TIGR00708 cobA cob(I)alamin ad 96.1 0.037 8E-07 44.6 7.8 111 104-215 5-141 (173)
478 PRK10820 DNA-binding transcrip 96.1 0.034 7.4E-07 53.1 9.0 62 82-145 203-266 (520)
479 TIGR03600 phage_DnaB phage rep 96.0 0.061 1.3E-06 50.0 10.5 53 104-159 194-246 (421)
480 PRK03731 aroL shikimate kinase 96.0 0.0065 1.4E-07 48.9 3.5 25 105-129 3-27 (171)
481 PF13521 AAA_28: AAA domain; P 96.0 0.0056 1.2E-07 48.9 3.1 21 107-127 2-22 (163)
482 COG4555 NatA ABC-type Na+ tran 96.0 0.046 1E-06 44.8 8.2 29 102-130 26-54 (245)
483 PRK00698 tmk thymidylate kinas 96.0 0.021 4.5E-07 47.3 6.6 27 105-131 4-30 (205)
484 COG0055 AtpD F0F1-type ATP syn 96.0 0.016 3.5E-07 51.7 6.0 92 104-198 147-255 (468)
485 cd01428 ADK Adenylate kinase ( 96.0 0.0057 1.2E-07 50.2 3.2 22 107-128 2-23 (194)
486 PRK15453 phosphoribulokinase; 96.0 0.0079 1.7E-07 52.1 4.1 28 102-129 3-30 (290)
487 TIGR02173 cyt_kin_arch cytidyl 96.0 0.0064 1.4E-07 48.8 3.4 24 106-129 2-25 (171)
488 PRK15064 ABC transporter ATP-b 96.0 0.055 1.2E-06 51.9 10.3 27 103-129 26-52 (530)
489 PRK08760 replicative DNA helic 96.0 0.063 1.4E-06 50.7 10.4 52 104-158 229-280 (476)
490 COG1936 Predicted nucleotide k 96.0 0.0056 1.2E-07 48.7 2.8 20 106-125 2-21 (180)
491 PRK09825 idnK D-gluconate kina 96.0 0.0067 1.5E-07 49.2 3.4 26 105-130 4-29 (176)
492 COG4152 ABC-type uncharacteriz 96.0 0.045 9.7E-07 46.3 8.2 108 103-214 27-190 (300)
493 PRK14738 gmk guanylate kinase; 96.0 0.0065 1.4E-07 50.7 3.4 26 102-127 11-36 (206)
494 PRK13976 thymidylate kinase; P 96.0 0.031 6.6E-07 46.7 7.4 26 106-131 2-27 (209)
495 TIGR00750 lao LAO/AO transport 96.0 0.016 3.5E-07 51.3 6.0 39 93-131 21-61 (300)
496 PRK14531 adenylate kinase; Pro 96.0 0.0072 1.6E-07 49.4 3.6 25 105-129 3-27 (183)
497 COG2019 AdkA Archaeal adenylat 96.0 0.0078 1.7E-07 47.6 3.5 47 104-162 4-50 (189)
498 COG0529 CysC Adenylylsulfate k 96.0 0.016 3.4E-07 46.4 5.2 32 100-131 19-50 (197)
499 PRK11176 lipid transporter ATP 96.0 0.056 1.2E-06 52.5 10.2 27 103-129 368-394 (582)
500 PRK13409 putative ATPase RIL; 95.9 0.06 1.3E-06 52.3 10.2 122 103-230 364-528 (590)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-42 Score=334.08 Aligned_cols=269 Identities=26% Similarity=0.435 Sum_probs=218.0
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHhcCCCCccccCCCC-CccccccCCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCC
Q 043850 36 LISRYKLSKKAATAAEDAANLLRKGNFSSVSYHPAP-DRAELRDVKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGG 114 (309)
Q Consensus 36 ~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~G 114 (309)
...-+.+++++-++...++.+..+..|..+...+.| ...+..+..+... +|.+..++++.+.|.+++..+++|+||||
T Consensus 111 ~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~~iv~i~GMGG 189 (889)
T KOG4658|consen 111 VSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDVGIVGIYGMGG 189 (889)
T ss_pred hhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCCCEEEEECCCc
Confidence 344466666666666666666555556555432222 1222222223333 99999999999999888779999999999
Q ss_pred CcHHHHHHHHHHHhh-cccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHHhcCCeEEEEEe
Q 043850 115 VGKTTLVKQVAMKVM-EDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL--NDSTLERTDGLRKRLNKEMRVLIILD 191 (309)
Q Consensus 115 iGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~L~~~~r~LlVlD 191 (309)
+||||||++++|+.. +..+|+.++||.||++++...++.+|+..++..... .....+....+.+.|.++ |||||||
T Consensus 190 vGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~k-rfllvLD 268 (889)
T KOG4658|consen 190 VGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGK-RFLLVLD 268 (889)
T ss_pred ccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccC-ceEEEEe
Confidence 999999999999998 889999999999999999999999999999875444 233468888999999986 8999999
Q ss_pred CCCCccC--------CCCCCCcEEEEeeCCccccccccCCCceEecC------------------CCCCCCCCcHHHHHH
Q 043850 192 NIWTKLE--------KDDQERCTIVLISRSRDLLCNDMNSQKDFWID------------------DSTRISAYQPTEHEI 245 (309)
Q Consensus 192 dv~~~~~--------~~~~~gs~iliTtR~~~v~~~~~~~~~~~~l~------------------~~~~~~~~~~~~~~i 245 (309)
|||+..+ |...+||+|++|||+..|+...|+....++++ .....+.++++|+++
T Consensus 269 DIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v 348 (889)
T KOG4658|consen 269 DIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEV 348 (889)
T ss_pred cccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHH
Confidence 9999977 55668899999999999987668887777777 123334488999999
Q ss_pred HHHhCCCchHHHHHHHHhcCCC-hHHHHHHHHHhcCCCccccCCCchhHHHHHHHhhcCCCC
Q 043850 246 VERRGGLPVAPSTIANALKSKS-VAIWKDALNQLKSPSLKEIHGMDADVYSSIKFMLQSESQ 306 (309)
Q Consensus 246 ~~~c~GlPLai~~~a~~l~~~~-~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~ 306 (309)
+++|+|+|||+.++|+.|++|. ..+|+++.+.+.+....+.++..+.++.+|++||++||+
T Consensus 349 ~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~ 410 (889)
T KOG4658|consen 349 AEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE 410 (889)
T ss_pred HHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH
Confidence 9999999999999999999988 889999999998876666667788999999999999993
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3e-36 Score=265.31 Aligned_cols=218 Identities=28% Similarity=0.456 Sum_probs=176.5
Q ss_pred hHHHHHHHHHHhhc--CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC-
Q 043850 88 RKEIFQVVMESLKD--DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD- 164 (309)
Q Consensus 88 R~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 164 (309)
|+.++++|.+.|.+ ++.++|+|+||||+||||||.+++++...+.+|+.++|++++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999977 789999999999999999999999997777789999999999999999999999999988743
Q ss_pred --CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--------CCCCCCcEEEEeeCCccccccccCCCceEecC----
Q 043850 165 --LNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE--------KDDQERCTIVLISRSRDLLCNDMNSQKDFWID---- 230 (309)
Q Consensus 165 --~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~--------~~~~~gs~iliTtR~~~v~~~~~~~~~~~~l~---- 230 (309)
...+..+....+.+.|.++ ++||||||||+... +....||+||+|||+..++.........+++.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~-~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDK-RCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCT-SEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhccc-cceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3467788999999999987 89999999998765 34557899999999998865433335677776
Q ss_pred -----------CC---CCCCCCcHHHHHHHHHhCCCchHHHHHHHHhcCC-ChHHHHHHHHHhcCCCccccCCCchhHHH
Q 043850 231 -----------DS---TRISAYQPTEHEIVERRGGLPVAPSTIANALKSK-SVAIWKDALNQLKSPSLKEIHGMDADVYS 295 (309)
Q Consensus 231 -----------~~---~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~ 295 (309)
+. ...+...+.+++|+++|+|+||||.++|++|+.+ +..+|..+++++...... ..+....++.
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 11 2356678899999999999999999999999654 488999999887765322 2224788999
Q ss_pred HHHHhhcCCCCC
Q 043850 296 SIKFMLQSESQK 307 (309)
Q Consensus 296 ~l~~sy~~L~~~ 307 (309)
++.+||+.||++
T Consensus 239 ~l~~s~~~L~~~ 250 (287)
T PF00931_consen 239 ALELSYDSLPDE 250 (287)
T ss_dssp HHHHHHHSSHTC
T ss_pred cceechhcCCcc
Confidence 999999999985
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=3.2e-29 Score=256.23 Aligned_cols=215 Identities=17% Similarity=0.344 Sum_probs=161.3
Q ss_pred CCCcccccchHHHHHHHHHHhh--cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEe---cCC--------
Q 043850 79 VKDYEIFDSRKEIFQVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEV---TQT-------- 145 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~-------- 145 (309)
+....+++||++.+++|..+|. .++.++|+|+||||+||||||+.+|+..... |++.+|+.. +..
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeeccccccchhhccccc
Confidence 3456789999999999998873 4578999999999999999999999987755 998887742 111
Q ss_pred ---CC-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--------CCCCCCcEEEEeeCC
Q 043850 146 ---PD-YRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE--------KDDQERCTIVLISRS 213 (309)
Q Consensus 146 ---~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~--------~~~~~gs~iliTtR~ 213 (309)
.+ ...+..+++..+-........ ....+++.|.++ |+||||||||+..+ ...++||+||||||+
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L~~k-rvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERLKHR-KVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHHhCC-eEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 01 123444555444222111010 124567778775 89999999998765 334689999999999
Q ss_pred ccccccccCCCceEecC-----------------CCCCCCCCcHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHH
Q 043850 214 RDLLCNDMNSQKDFWID-----------------DSTRISAYQPTEHEIVERRGGLPVAPSTIANALKSKSVAIWKDALN 276 (309)
Q Consensus 214 ~~v~~~~~~~~~~~~l~-----------------~~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l~~~~~~~w~~~l~ 276 (309)
..++. .++..+.|.+. ...++..+.+++++|+++|+|+||||+++|++|++++..+|+++++
T Consensus 334 ~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~ 412 (1153)
T PLN03210 334 KHFLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLP 412 (1153)
T ss_pred HHHHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 98864 34556777776 1223345678899999999999999999999999999999999999
Q ss_pred HhcCCCccccCCCchhHHHHHHHhhcCCCCC
Q 043850 277 QLKSPSLKEIHGMDADVYSSIKFMLQSESQK 307 (309)
Q Consensus 277 ~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 307 (309)
++.... ..+|.++|++||++|+++
T Consensus 413 ~L~~~~-------~~~I~~~L~~SYd~L~~~ 436 (1153)
T PLN03210 413 RLRNGL-------DGKIEKTLRVSYDGLNNK 436 (1153)
T ss_pred HHHhCc-------cHHHHHHHHHhhhccCcc
Confidence 986532 456899999999999864
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.28 E-value=1.9e-10 Score=116.71 Aligned_cols=178 Identities=15% Similarity=0.124 Sum_probs=115.0
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEec-CCCCHHHHHHHHHH
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT-QTPDYRKIEDQFAF 157 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~ 157 (309)
|..+..++-|...++.|-. ....+++.|+|++|.||||++.++.+. ++.++|+++. .+.+...++..++.
T Consensus 10 p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence 4455678889877766543 235689999999999999999998852 3368999996 44566777777777
Q ss_pred HhCCCCCC-------------CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCccC-----------CCCCCCcEEEEeeC
Q 043850 158 DLGMKLDL-------------NDSTLERTDGLRKRLNK-EMRVLIILDNIWTKLE-----------KDDQERCTIVLISR 212 (309)
Q Consensus 158 ~l~~~~~~-------------~~~~~~~~~~l~~~L~~-~~r~LlVlDdv~~~~~-----------~~~~~gs~iliTtR 212 (309)
.++..... ..+.......+...+.. +.+++|||||+..... .....+.++|||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 77421111 01223344444445543 4589999999977643 34456778889999
Q ss_pred Ccccccc-ccC-CCceEecC----------------CCCCCCCCcHHHHHHHHHhCCCchHHHHHHHHhcC
Q 043850 213 SRDLLCN-DMN-SQKDFWID----------------DSTRISAYQPTEHEIVERRGGLPVAPSTIANALKS 265 (309)
Q Consensus 213 ~~~v~~~-~~~-~~~~~~l~----------------~~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l~~ 265 (309)
...-... ... ......+. .....+-..+....|.+.|+|.|+++..++..+..
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 8532110 000 11122222 11222334567789999999999999999877754
No 5
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.26 E-value=2e-09 Score=93.81 Aligned_cols=159 Identities=15% Similarity=0.182 Sum_probs=96.7
Q ss_pred cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH-
Q 043850 101 DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKR- 179 (309)
Q Consensus 101 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~- 179 (309)
..+..++.|+|++|+|||||++.+++...... + ...|+ +....+..+++..|+..++.+... .+.......+.+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFL 115 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHH
Confidence 34457899999999999999999998866321 1 22233 233457778999999999876543 3333333444333
Q ss_pred ---HhcCCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCccc---cccc---c--CCCceEecC-----
Q 043850 180 ---LNKEMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRDL---LCND---M--NSQKDFWID----- 230 (309)
Q Consensus 180 ---L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~v---~~~~---~--~~~~~~~l~----- 230 (309)
+..+++.+||+||++.... ........|++|...... .... . .....+.+.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 3344579999999988653 111223345565543211 0000 0 001122333
Q ss_pred -------------CCC-CCCCCcHHHHHHHHHhCCCchHHHHHHHHh
Q 043850 231 -------------DST-RISAYQPTEHEIVERRGGLPVAPSTIANAL 263 (309)
Q Consensus 231 -------------~~~-~~~~~~~~~~~i~~~c~GlPLai~~~a~~l 263 (309)
+.. ...-..+..+.|++.|+|.|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 111 123345788999999999999999998776
No 6
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.24 E-value=3.9e-11 Score=101.89 Aligned_cols=171 Identities=22% Similarity=0.301 Sum_probs=90.6
Q ss_pred ccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHH---------
Q 043850 85 FDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQF--------- 155 (309)
Q Consensus 85 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--------- 155 (309)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+...... + .++|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 799999999999999877789999999999999999999999875431 1 3344444333222 111111
Q ss_pred -HHHhCCCC----------CCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc-C-----------------CCCCCCc
Q 043850 156 -AFDLGMKL----------DLNDSTLERTDGLRKRLNK-EMRVLIILDNIWTKL-E-----------------KDDQERC 205 (309)
Q Consensus 156 -~~~l~~~~----------~~~~~~~~~~~~l~~~L~~-~~r~LlVlDdv~~~~-~-----------------~~~~~gs 205 (309)
...++... ............+.+.+.. .++++||+||+.... . .......
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 12221110 0112233444555555543 235999999997766 1 2233444
Q ss_pred EEEEeeCCcccccc-------ccCCCceEecC---------------CCCCC-CCCcHHHHHHHHHhCCCchHHHH
Q 043850 206 TIVLISRSRDLLCN-------DMNSQKDFWID---------------DSTRI-SAYQPTEHEIVERRGGLPVAPST 258 (309)
Q Consensus 206 ~iliTtR~~~v~~~-------~~~~~~~~~l~---------------~~~~~-~~~~~~~~~i~~~c~GlPLai~~ 258 (309)
.+++++....+... .......+.+. ..... +...+..++|+..+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 45555554433221 11122224444 11111 23466779999999999998865
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.18 E-value=6.2e-10 Score=102.41 Aligned_cols=117 Identities=22% Similarity=0.142 Sum_probs=89.5
Q ss_pred CcccccchHHHHHHHHHHhhc----CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHH
Q 043850 81 DYEIFDSRKEIFQVVMESLKD----DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFA 156 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 156 (309)
.+..|+||++++++|...+.+ .....+.|+|++|+|||++++.+++........-..+++++....+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 446799999999999988732 3456789999999999999999999887653234567778777778889999999
Q ss_pred HHhCCC-C-CCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc
Q 043850 157 FDLGMK-L-DLNDSTLERTDGLRKRLNK-EMRVLIILDNIWTKL 197 (309)
Q Consensus 157 ~~l~~~-~-~~~~~~~~~~~~l~~~L~~-~~r~LlVlDdv~~~~ 197 (309)
.++... . ....+..+....+.+.+.. +++.+||||+++...
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLF 151 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhh
Confidence 998652 2 2234566777778787754 346899999998754
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.16 E-value=8e-10 Score=100.62 Aligned_cols=115 Identities=23% Similarity=0.224 Sum_probs=85.6
Q ss_pred cccccchHHHHHHHHHHhhc----CCCcEEEEEeCCCCcHHHHHHHHHHHhhccc-CC---CeEEEEEecCCCCHHHHHH
Q 043850 82 YEIFDSRKEIFQVVMESLKD----DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDK-LF---DKVVMAEVTQTPDYRKIED 153 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f---~~~~wv~~~~~~~~~~~~~ 153 (309)
|+.|+||++++++|...+.+ .....+.|+|++|+|||++++.+++...... .. -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 45799999999999999853 3456899999999999999999998765321 11 2467888877778889999
Q ss_pred HHHHHh---CCCCCC-CCCHHHHHHHHHHHHh-cCCeEEEEEeCCCCc
Q 043850 154 QFAFDL---GMKLDL-NDSTLERTDGLRKRLN-KEMRVLIILDNIWTK 196 (309)
Q Consensus 154 ~i~~~l---~~~~~~-~~~~~~~~~~l~~~L~-~~~r~LlVlDdv~~~ 196 (309)
.|+.++ +...+. ..+..+....+.+.+. .+++++||||+++..
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 999998 433222 2344556666767664 344789999999877
No 9
>PF05729 NACHT: NACHT domain
Probab=99.09 E-value=8.7e-10 Score=88.50 Aligned_cols=106 Identities=25% Similarity=0.345 Sum_probs=69.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccC----CCeEEEEEecCCCCHH---HHHHHHHHHhCCCCCCCCCHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKL----FDKVVMAEVTQTPDYR---KIEDQFAFDLGMKLDLNDSTLERTDGLR 177 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 177 (309)
+++.|+|.+|+||||+++.++........ +...+|.+.+...... .+...|..+....... ....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~------~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP------IEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh------hHHHHH
Confidence 57899999999999999999998876543 3467777776544322 3333333333222111 111344
Q ss_pred HHHhcCCeEEEEEeCCCCccC-------------------CCCCCCcEEEEeeCCccc
Q 043850 178 KRLNKEMRVLIILDNIWTKLE-------------------KDDQERCTIVLISRSRDL 216 (309)
Q Consensus 178 ~~L~~~~r~LlVlDdv~~~~~-------------------~~~~~gs~iliTtR~~~v 216 (309)
..+...++++||||+++.... ....+++++++|||....
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~ 132 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAF 132 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChH
Confidence 444455689999999966443 224678999999998865
No 10
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.08 E-value=8.9e-10 Score=85.06 Aligned_cols=111 Identities=20% Similarity=0.293 Sum_probs=83.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhccc---CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDK---LFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKR 179 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 179 (309)
+.+.+.|+|.+|+|||++++.+++...... .-..++|+++....+...+...|+..++.......+..+....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 347899999999999999999999875421 12467799998888999999999999998876656778888899999
Q ss_pred HhcCCeEEEEEeCCCCc-cC--------CCCCCCcEEEEeeCC
Q 043850 180 LNKEMRVLIILDNIWTK-LE--------KDDQERCTIVLISRS 213 (309)
Q Consensus 180 L~~~~r~LlVlDdv~~~-~~--------~~~~~gs~iliTtR~ 213 (309)
+...+..+||+|++... .. .....+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 98765679999999876 33 334677777776665
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.98 E-value=2e-08 Score=89.14 Aligned_cols=174 Identities=13% Similarity=0.062 Sum_probs=99.2
Q ss_pred cccccchHHHHHHHHHHhh-----cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHH
Q 043850 82 YEIFDSRKEIFQVVMESLK-----DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFA 156 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 156 (309)
..+|+|+++.+++|..++. ......+.++|++|+|||+||+.+++..... + ..+..+...... .+...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~-~l~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPG-DLAAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCch-hHHHHH
Confidence 3579999999999988885 2345678899999999999999999876543 2 122222111222 223333
Q ss_pred HHhCCCCC----C-CCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--CCCCCCcEEEEeeCCcccccccc-CCCceEe
Q 043850 157 FDLGMKLD----L-NDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE--KDDQERCTIVLISRSRDLLCNDM-NSQKDFW 228 (309)
Q Consensus 157 ~~l~~~~~----~-~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~--~~~~~gs~iliTtR~~~v~~~~~-~~~~~~~ 228 (309)
..++...- + ..-.......+...+.+. +..+|+++..+... ....+.+-|..||+...+..... .....+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~ 155 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDF-RLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILR 155 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhh-heeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEE
Confidence 44432210 0 000112344566666664 67788887666554 23334565666777654322100 0112233
Q ss_pred cC---------------CCCCCCCCcHHHHHHHHHhCCCchHHHHHHHH
Q 043850 229 ID---------------DSTRISAYQPTEHEIVERRGGLPVAPSTIANA 262 (309)
Q Consensus 229 l~---------------~~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~ 262 (309)
+. +.....-..+....|++.|+|.|-.+..++..
T Consensus 156 l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 156 LEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred eCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHH
Confidence 33 12222334567789999999999766555544
No 12
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.94 E-value=4e-09 Score=86.31 Aligned_cols=48 Identities=23% Similarity=0.348 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHHhh---cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 84 IFDSRKEIFQVVMESLK---DDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.|+||++++++|...+. ....+.+.|+|.+|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999992 3457899999999999999999999988876
No 13
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.93 E-value=3.8e-08 Score=88.23 Aligned_cols=177 Identities=15% Similarity=0.071 Sum_probs=100.0
Q ss_pred CCCcccccchHHHHHHHHHHhh-----cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHH
Q 043850 79 VKDYEIFDSRKEIFQVVMESLK-----DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIED 153 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 153 (309)
|....+|+|+++.++.|...+. ......+.|+|++|+|||+||+.+++..... + .+++.+. ......+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHH
Confidence 4466789999999999887774 2345688999999999999999999987643 1 1222221 11222334
Q ss_pred HHHHHhCCCCCC-CCC----HHHHHHHHHHHHhcCCeEEEEEeCCCCccC--CCCCCCcEEEEeeCCcccccccc-CCCc
Q 043850 154 QFAFDLGMKLDL-NDS----TLERTDGLRKRLNKEMRVLIILDNIWTKLE--KDDQERCTIVLISRSRDLLCNDM-NSQK 225 (309)
Q Consensus 154 ~i~~~l~~~~~~-~~~----~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~--~~~~~gs~iliTtR~~~v~~~~~-~~~~ 225 (309)
.++..++...-- .++ .....+.+...+... +..+++|+..+... ....+.+-|..|++...+..... ....
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~-~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~ 173 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDF-RLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGI 173 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhc-ceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCe
Confidence 444444322100 000 012233455556554 67778877655444 22233455666766554321100 0112
Q ss_pred eEecC---------------CCCCCCCCcHHHHHHHHHhCCCchHHHHHHHH
Q 043850 226 DFWID---------------DSTRISAYQPTEHEIVERRGGLPVAPSTIANA 262 (309)
Q Consensus 226 ~~~l~---------------~~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~ 262 (309)
.+.+. +.....-.++....|++.|+|.|-.+..+...
T Consensus 174 ~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 174 VQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRR 225 (328)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHH
Confidence 23333 22223344567899999999999755555543
No 14
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.7e-08 Score=89.85 Aligned_cols=116 Identities=26% Similarity=0.270 Sum_probs=94.0
Q ss_pred ccccchHHHHHHHHHHhh----cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 043850 83 EIFDSRKEIFQVVMESLK----DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFD 158 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 158 (309)
..+.+|+++++++...|. ...+.-+.|+|.+|+|||+.++.+.........=..+++|++....+...++..|+++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 448899999999998874 3345559999999999999999999998775222238999999999999999999999
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCccC
Q 043850 159 LGMKLDLNDSTLERTDGLRKRLNK-EMRVLIILDNIWTKLE 198 (309)
Q Consensus 159 l~~~~~~~~~~~~~~~~l~~~L~~-~~r~LlVlDdv~~~~~ 198 (309)
++..+....+..+....+.+.+.. ++.+++|||+++....
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~ 137 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD 137 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc
Confidence 985555557777888888888854 4578999999977654
No 15
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.92 E-value=2.8e-08 Score=77.52 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=72.5
Q ss_pred cchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC
Q 043850 86 DSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL 165 (309)
Q Consensus 86 ~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 165 (309)
.|++..+..+...+.....+.+.|+|.+|+|||+|++.+++..... -..+++++..+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 4788999999998877667889999999999999999999987532 2356677665443322211111000
Q ss_pred CCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC------------CCC----CCCcEEEEeeCCcc
Q 043850 166 NDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE------------KDD----QERCTIVLISRSRD 215 (309)
Q Consensus 166 ~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~------------~~~----~~gs~iliTtR~~~ 215 (309)
............++.+||+||++.... ... ..++.+|+||....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 000111111122368999999986421 111 46788888888664
No 16
>PTZ00202 tuzin; Provisional
Probab=98.88 E-value=8.6e-08 Score=86.61 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=73.3
Q ss_pred cCCCcccccchHHHHHHHHHHhhc---CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHH
Q 043850 78 DVKDYEIFDSRKEIFQVVMESLKD---DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQ 154 (309)
Q Consensus 78 ~~~~~~~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 154 (309)
.|.+...|+||++++.+|...|.+ ..++++.|.|++|+|||||++.+..... + ..++++.. +..+++..
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHH
Confidence 466788999999999999998853 2346899999999999999999986544 1 24444444 67999999
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHH----hc-CCeEEEEE
Q 043850 155 FAFDLGMKLDLNDSTLERTDGLRKRL----NK-EMRVLIIL 190 (309)
Q Consensus 155 i~~~l~~~~~~~~~~~~~~~~l~~~L----~~-~~r~LlVl 190 (309)
|+.+||.+... ...++...+.+.| .. +++.+||+
T Consensus 329 LL~ALGV~p~~--~k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 329 VVKALGVPNVE--ACGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HHHHcCCCCcc--cHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999985432 2244555555544 22 34555554
No 17
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.88 E-value=1.3e-07 Score=90.98 Aligned_cols=181 Identities=20% Similarity=0.159 Sum_probs=123.0
Q ss_pred cCCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC-CCCHHHHHHHHH
Q 043850 78 DVKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ-TPDYRKIEDQFA 156 (309)
Q Consensus 78 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~ 156 (309)
+|.++.+.+-|...++.|.+. .+.+.+.|..++|.|||||+.+++..... =..+.|.++++ +.++..++.-++
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~---~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA---NDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred CCCCcccccccHHHHHHHhcC---CCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHH
Confidence 344567788898766665442 46799999999999999999999873332 35789999976 457888888888
Q ss_pred HHhCCCCCC-------------CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCccC-----------CCCCCCcEEEEee
Q 043850 157 FDLGMKLDL-------------NDSTLERTDGLRKRLNK-EMRVLIILDNIWTKLE-----------KDDQERCTIVLIS 211 (309)
Q Consensus 157 ~~l~~~~~~-------------~~~~~~~~~~l~~~L~~-~~r~LlVlDdv~~~~~-----------~~~~~gs~iliTt 211 (309)
..++.-.+. ..+.......+..-|.. .+++++||||..-..+ ...+.+-.+++||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 888643322 12333455555555532 3479999999866555 5667788899999
Q ss_pred CCcccccc--ccCCCceEecC----------------CCCCCCCCcHHHHHHHHHhCCCchHHHHHHHHhc
Q 043850 212 RSRDLLCN--DMNSQKDFWID----------------DSTRISAYQPTEHEIVERRGGLPVAPSTIANALK 264 (309)
Q Consensus 212 R~~~v~~~--~~~~~~~~~l~----------------~~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l~ 264 (309)
|+..-..- ..-.....++. .....+-.....+.+.+..+|-+-|+..++=.++
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 99853210 00111222333 1222344455678899999999999999887777
No 18
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.86 E-value=5.7e-09 Score=89.23 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=65.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC--CCHHHHHHHH-----HHHhCCCCCCC-CCHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT--PDYRKIEDQF-----AFDLGMKLDLN-DSTLERTD 174 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i-----~~~l~~~~~~~-~~~~~~~~ 174 (309)
.-..++|+|++|+|||||++.+++..... +|+.+.|+.+.++ .++.++++.+ +..++.+.... ........
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34789999999999999999999988776 8999999997776 7899999998 33333321110 01112223
Q ss_pred HHHHHHhcCCeEEEEEeCCCCccC
Q 043850 175 GLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 175 ~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
....+...+++.+|++|++.....
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~a~ 117 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRLAR 117 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHhhh
Confidence 333333334689999999965443
No 19
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.85 E-value=2.6e-08 Score=88.26 Aligned_cols=128 Identities=16% Similarity=0.201 Sum_probs=79.8
Q ss_pred CCCcccccchHHHH---HHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHH
Q 043850 79 VKDYEIFDSRKEIF---QVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQF 155 (309)
Q Consensus 79 ~~~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 155 (309)
|....+++|-+..+ .-|...++.+......+||++|+||||||+.++...... | ..++...+-.+-+
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdl--- 89 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDL--- 89 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHH---
Confidence 44556777776554 345556667888899999999999999999999866544 3 3333222211212
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------CCCCCCcEEEE--eeCCccccc--cccCCC
Q 043850 156 AFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE-------KDDQERCTIVL--ISRSRDLLC--NDMNSQ 224 (309)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------~~~~~gs~ili--TtR~~~v~~--~~~~~~ 224 (309)
....+.-++....+++.+|++|.|..... |....|.-|+| ||.++.+.- ......
T Consensus 90 --------------r~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 90 --------------REIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred --------------HHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 22233333333334689999999966543 77778887776 777775431 123344
Q ss_pred ceEecC
Q 043850 225 KDFWID 230 (309)
Q Consensus 225 ~~~~l~ 230 (309)
.+|.++
T Consensus 156 ~vf~lk 161 (436)
T COG2256 156 RVFELK 161 (436)
T ss_pred heeeee
Confidence 566665
No 20
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.80 E-value=7.6e-08 Score=88.98 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=43.3
Q ss_pred CCCcccccchHHHHHH---HHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQV---VMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~---l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+|+|++..+.. |..++.......+.|+|++|+||||||+.+++....
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~ 62 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA 62 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4456789999988766 888887777788999999999999999999987643
No 21
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.76 E-value=1.9e-07 Score=90.75 Aligned_cols=116 Identities=19% Similarity=0.135 Sum_probs=81.4
Q ss_pred cccccchHHHHHHHHHHhhc----CC-CcEEEEEeCCCCcHHHHHHHHHHHhhcc---cCCC--eEEEEEecCCCCHHHH
Q 043850 82 YEIFDSRKEIFQVVMESLKD----DK-LKVIGVYGMGGVGKTTLVKQVAMKVMED---KLFD--KVVMAEVTQTPDYRKI 151 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~~----~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~--~~~wv~~~~~~~~~~~ 151 (309)
|..+.||++|+++|...|.. .+ ..++.|+|.+|+|||++++.|.+..... ...+ .+++|++....+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 35678999999999988842 22 3567899999999999999998876432 1122 4678888777788889
Q ss_pred HHHHHHHhC-CCCCCCCCHHHHHHHHHHHHhc--CCeEEEEEeCCCCcc
Q 043850 152 EDQFAFDLG-MKLDLNDSTLERTDGLRKRLNK--EMRVLIILDNIWTKL 197 (309)
Q Consensus 152 ~~~i~~~l~-~~~~~~~~~~~~~~~l~~~L~~--~~r~LlVlDdv~~~~ 197 (309)
+..|..++. ..+.......+....+...+.. +...+||||+++...
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~ 882 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLI 882 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhC
Confidence 999998884 3332233444555555555522 223589999997665
No 22
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.68 E-value=1.2e-06 Score=75.95 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=83.0
Q ss_pred HHHHHHHHHhh---cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCC----eEEEEEecCCCCHHHHHHHHHHHhCCC
Q 043850 90 EIFQVVMESLK---DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFD----KVVMAEVTQTPDYRKIEDQFAFDLGMK 162 (309)
Q Consensus 90 ~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~~l~~~ 162 (309)
+.++.|.+.+. ....+.+.|+|.+|.|||++++++.........-+ .++.|.....++...+...|+.+++.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 34555555553 23567899999999999999999998765431111 477888889999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 163 LDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 163 ~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
.....+...........|+.-.--+||+|++.+...
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc
Confidence 876666677677777777654467999999977544
No 23
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.67 E-value=7.8e-07 Score=80.02 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=44.8
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|.....++|++..++.|..++..+..+.+.++|++|+||||+|+.+++....
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4456788999999999999988777677899999999999999999987654
No 24
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.67 E-value=4e-07 Score=75.52 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=37.7
Q ss_pred CCCcccccchHHHHHHHHHHhh-----cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLK-----DDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
|....+|+|-++.+..+.-.+. .+....+.++|++|+||||||.-+++.....
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~ 77 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN 77 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC
Confidence 5567899999998888765542 2356789999999999999999999987765
No 25
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=1.7e-06 Score=83.50 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=43.9
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|.+..++.|.+++..++ .+.+.++|..|+||||+|+.+++....
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4456789999999999999997765 456689999999999999999887653
No 26
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=9.6e-07 Score=86.65 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=44.0
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCc-EEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLK-VIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|.....++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++....
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 445678999999999999999776655 4589999999999999999988754
No 27
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.65 E-value=7.7e-08 Score=86.19 Aligned_cols=90 Identities=11% Similarity=0.083 Sum_probs=61.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC--CHHHHHHHHHHHhCCCCCCCCCHH-------HHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP--DYRKIEDQFAFDLGMKLDLNDSTL-------ERTD 174 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~-------~~~~ 174 (309)
-+..+|+|++|+||||||+.+++..... +|+.++||.+.+.. .+.++++.+...+-..... .... ....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d-~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD-EPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC-CCHHHHHHHHHHHHH
Confidence 3567899999999999999999998876 89999999998887 7778888876322111111 1111 1122
Q ss_pred HHHHHHhcCCeEEEEEeCCCC
Q 043850 175 GLRKRLNKEMRVLIILDNIWT 195 (309)
Q Consensus 175 ~l~~~L~~~~r~LlVlDdv~~ 195 (309)
....+...++.++|++|++..
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHH
Confidence 222222334589999999954
No 28
>PLN03025 replication factor C subunit; Provisional
Probab=98.63 E-value=6.8e-07 Score=79.87 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=44.4
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|.++.++.|..++..+..+.+.++|++|+||||+|..+++....
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4556788999999999988887776677889999999999999999988744
No 29
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.63 E-value=7.9e-08 Score=84.13 Aligned_cols=115 Identities=10% Similarity=0.186 Sum_probs=75.8
Q ss_pred cccccchHHHHH---HHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 043850 82 YEIFDSRKEIFQ---VVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFD 158 (309)
Q Consensus 82 ~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 158 (309)
..++||.+..+. .|.+.++.+..+.+.+||++|+||||||+.+....+... ..||.+|....-..-.+.|.++
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 345667665432 344455677889999999999999999999998776542 5678777654444444444433
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------CCCCCCcEEEE--eeCCccc
Q 043850 159 LGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE-------KDDQERCTIVL--ISRSRDL 216 (309)
Q Consensus 159 l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------~~~~~gs~ili--TtR~~~v 216 (309)
-. . .....++|.+|++|.|..... |.-.+|..++| ||.++.+
T Consensus 213 aq--------------~--~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSF 263 (554)
T KOG2028|consen 213 AQ--------------N--EKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSF 263 (554)
T ss_pred HH--------------H--HHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCcc
Confidence 21 1 111234589999999955432 66778886665 7777754
No 30
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.63 E-value=8.6e-07 Score=88.55 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=41.5
Q ss_pred cccchHHHHHHHHHHhh---cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 84 IFDSRKEIFQVVMESLK---DDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.++||+.+++.|...+. .....++.+.|.+|||||+|++.|......+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 36899999999999884 3456799999999999999999999887665
No 31
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=6.9e-07 Score=84.98 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=44.2
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|-+..++.|.+.+..++. +.+.++|..|+||||+|+.+++....
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44567899999999999999977665 56789999999999999999987653
No 32
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.60 E-value=2.3e-06 Score=76.31 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=45.1
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
|....+++|+++.++.|..++.....+.+.|+|.+|+||||+|+.+++.....
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 44556789999999999999977766778999999999999999999886543
No 33
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.58 E-value=1.8e-07 Score=84.23 Aligned_cols=92 Identities=12% Similarity=0.080 Sum_probs=63.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC--CCHHHHHHHHHHHhCCCCCC-CCCH-----HHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT--PDYRKIEDQFAFDLGMKLDL-NDST-----LERTDG 175 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~-~~~~-----~~~~~~ 175 (309)
-..++|+|++|+|||||++.+++..... +|+..+|+.+.+. .++.++++.++..+-..... +... ....+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 4678999999999999999999988765 8999999999866 68899999985443111111 1111 112222
Q ss_pred HHHHHhcCCeEEEEEeCCCCc
Q 043850 176 LRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 176 l~~~L~~~~r~LlVlDdv~~~ 196 (309)
.......+++++|++|++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 333333456899999999654
No 34
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.56 E-value=1.1e-07 Score=84.78 Aligned_cols=191 Identities=23% Similarity=0.259 Sum_probs=126.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCC-eEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFD-KVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLN 181 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 181 (309)
..+.+.++|.|||||||++-++.. .... |. .+.++.+..-.+...+.-.+...++...... +.....+..+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 358899999999999999999998 5554 65 6777777777777777777777787765431 223344555555
Q ss_pred cCCeEEEEEeCCCCccC---------CCCCCCcEEEEeeCCccccccccCCCceEecC---------------------C
Q 043850 182 KEMRVLIILDNIWTKLE---------KDDQERCTIVLISRSRDLLCNDMNSQKDFWID---------------------D 231 (309)
Q Consensus 182 ~~~r~LlVlDdv~~~~~---------~~~~~gs~iliTtR~~~v~~~~~~~~~~~~l~---------------------~ 231 (309)
. +|.++|+||...... ......-.++.|+|...... ....+.+. .
T Consensus 87 ~-rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~----ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 87 D-RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA----GEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred h-hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc----ccccccCCccccCCchhHHHHHHHHHhccc
Confidence 5 489999999987766 45566667888999875322 11111111 1
Q ss_pred CCCCCCCcHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHH----hcCCCccccCCCchhHHHHHHHhhcCCC
Q 043850 232 STRISAYQPTEHEIVERRGGLPVAPSTIANALKSKSVAIWKDALNQ----LKSPSLKEIHGMDADVYSSIKFMLQSES 305 (309)
Q Consensus 232 ~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l~~~~~~~w~~~l~~----l~~~~~~~~~~~~~~i~~~l~~sy~~L~ 305 (309)
..-.........+|+++..|.|++|..+++..+.-...+-...++. +... .....--.......+..||.-|.
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhh
Confidence 2222334567789999999999999999999987665444444433 1111 11111113456778888886554
No 35
>PRK06893 DNA replication initiation factor; Validated
Probab=98.56 E-value=1.3e-06 Score=74.19 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=31.0
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEec
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT 143 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 143 (309)
...+.+.|+|++|+|||+|++.+++....+ ...+.|+++.
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~ 76 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLS 76 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence 344678999999999999999999987654 3455677653
No 36
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.56 E-value=1.2e-06 Score=74.16 Aligned_cols=60 Identities=13% Similarity=0.266 Sum_probs=44.3
Q ss_pred ccccc--chHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEec
Q 043850 82 YEIFD--SRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT 143 (309)
Q Consensus 82 ~~~~~--gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 143 (309)
..+|+ +.+..++.+.+++.......+.|+|.+|+|||+||+.+++..... ....++++++
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~ 75 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLA 75 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHH
Confidence 34555 355677788877655667899999999999999999999887643 3445666654
No 37
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=2.7e-06 Score=77.29 Aligned_cols=51 Identities=22% Similarity=0.295 Sum_probs=43.1
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|....+++|.+..++.|.+.+..++. +.+.++|+.|+||||+|+.+++...
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 34567889999999999998876554 5678999999999999999998765
No 38
>PF13173 AAA_14: AAA domain
Probab=98.52 E-value=3.5e-07 Score=70.39 Aligned_cols=93 Identities=26% Similarity=0.343 Sum_probs=61.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKE 183 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 183 (309)
.+++.|.|+.|+|||||+++++.+.. ....++++++.+......... +..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP-----------------DLLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh-----------------hhHHHHHHhhccC
Confidence 47899999999999999999998766 245677777654322110000 0122233332233
Q ss_pred CeEEEEEeCCCCccC--------CCCCCCcEEEEeeCCcccc
Q 043850 184 MRVLIILDNIWTKLE--------KDDQERCTIVLISRSRDLL 217 (309)
Q Consensus 184 ~r~LlVlDdv~~~~~--------~~~~~gs~iliTtR~~~v~ 217 (309)
..+|+||++..... ....+..+|++|+.+....
T Consensus 62 -~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 62 -KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred -CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 68999999977766 3344578899999988654
No 39
>PRK04195 replication factor C large subunit; Provisional
Probab=98.51 E-value=3.1e-06 Score=79.87 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=43.2
Q ss_pred CCCcccccchHHHHHHHHHHhhc----CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKD----DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|....+++|+++.+++|.+|+.. ...+.+.|+|++|+||||+|+.+++...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45567899999999999999853 2268899999999999999999998764
No 40
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=3.9e-06 Score=79.08 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=43.5
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|-+...+.|..++..+.. ..+.++|++|+||||+|+.+++....
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 44567889999999999998876654 45699999999999999999988764
No 41
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=2.9e-06 Score=80.34 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=42.9
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|....+++|.+..++.|...+..+.. +.+.++|+.|+||||+|+.+++...
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44567889999999999999976554 5578999999999999999998664
No 42
>PF14516 AAA_35: AAA-like domain
Probab=98.49 E-value=2.2e-05 Score=70.47 Aligned_cols=185 Identities=15% Similarity=0.163 Sum_probs=107.3
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC-----CCHHHHHH
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT-----PDYRKIED 153 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~ 153 (309)
+...+.++.|...-+++.+.+.+. -..+.|.|+-.+|||+|...+.+....+ .| .++++++..- .+....++
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHH
Confidence 445667789997777777777553 3689999999999999999999888765 23 4457776542 24555555
Q ss_pred HHHH----HhCCCCCC-------CCCHHHHHHHHHHHH-h-cCCeEEEEEeCCCCccC-------------------C-C
Q 043850 154 QFAF----DLGMKLDL-------NDSTLERTDGLRKRL-N-KEMRVLIILDNIWTKLE-------------------K-D 200 (309)
Q Consensus 154 ~i~~----~l~~~~~~-------~~~~~~~~~~l~~~L-~-~~~r~LlVlDdv~~~~~-------------------~-~ 200 (309)
.++. +++.+... ..+.......+.+.+ . .+++.+|+||+++.... . .
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 5544 44443211 112233344454443 2 24589999999976554 1 1
Q ss_pred CCCCcEEEEeeCCccccccc------cCCCceEecC-----------CCCCCCCCcHHHHHHHHHhCCCchHHHHHHHHh
Q 043850 201 DQERCTIVLISRSRDLLCND------MNSQKDFWID-----------DSTRISAYQPTEHEIVERRGGLPVAPSTIANAL 263 (309)
Q Consensus 201 ~~~gs~iliTtR~~~v~~~~------~~~~~~~~l~-----------~~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l 263 (309)
.....-.++........... ......++|. ......-..+..++|...+||+|..+..++..+
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l 243 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFSQEQLEQLMDWTGGHPYLVQKACYLL 243 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCCHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11111122222222111000 1111223333 111111223348899999999999999999999
Q ss_pred cCC
Q 043850 264 KSK 266 (309)
Q Consensus 264 ~~~ 266 (309)
...
T Consensus 244 ~~~ 246 (331)
T PF14516_consen 244 VEE 246 (331)
T ss_pred HHc
Confidence 754
No 43
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=3.2e-06 Score=79.07 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=43.2
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|.+.....|...+..+.. +.+.++|++|+||||+|+.+++....
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 44567899999998888888876665 56899999999999999999887643
No 44
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.49 E-value=2.3e-06 Score=75.53 Aligned_cols=113 Identities=19% Similarity=0.186 Sum_probs=81.7
Q ss_pred CcccccchHHHHHHHHHHhhcCC---CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHH
Q 043850 81 DYEIFDSRKEIFQVVMESLKDDK---LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAF 157 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~~~---~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 157 (309)
..+.|.+|+.++..|...+.+.. +..|.|.|-+|.|||.+.+++.+.... .-+|+++-+.++...++..|+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHH
Confidence 34678899999999999986443 455689999999999999999987733 3589999999999999999999
Q ss_pred HhCCCCCCCCC-------HHHHHHHHHH--HHhc-CCeEEEEEeCCCCccC
Q 043850 158 DLGMKLDLNDS-------TLERTDGLRK--RLNK-EMRVLIILDNIWTKLE 198 (309)
Q Consensus 158 ~l~~~~~~~~~-------~~~~~~~l~~--~L~~-~~r~LlVlDdv~~~~~ 198 (309)
+.+.....+.. ..+....+.+ ...+ +..++|||||++...+
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD 129 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD 129 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc
Confidence 98632222111 1122222333 1111 2369999999987766
No 45
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=3.8e-06 Score=74.84 Aligned_cols=157 Identities=13% Similarity=0.193 Sum_probs=93.4
Q ss_pred ccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhc----ccCCCeEEEEEe-cCCCCHHHHHHHHH
Q 043850 83 EIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVME----DKLFDKVVMAEV-TQTPDYRKIEDQFA 156 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~f~~~~wv~~-~~~~~~~~~~~~i~ 156 (309)
.+++|-+...+.|.+++..+. .+.+.++|+.|+||||+|+.++...-. ..|++...|... +.....++ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 467899999999999987665 467789999999999999999987532 346666666542 22333333 33344
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------CCCCCCcEEEEeeCCccccc-cccCCCc
Q 043850 157 FDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE----------KDDQERCTIVLISRSRDLLC-NDMNSQK 225 (309)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~----------~~~~~gs~iliTtR~~~v~~-~~~~~~~ 225 (309)
..+...+. .++ +-++|+|+++.... .....++.+|++|.+..... .......
T Consensus 83 ~~~~~~p~----------------~~~-~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 83 EEVNKKPY----------------EGD-KKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred HHHhcCcc----------------cCC-ceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 44332221 133 56777777755433 34456788888886664221 1111223
Q ss_pred eEecC-----------CCCCCCCCcHHHHHHHHHhCCCchHHH
Q 043850 226 DFWID-----------DSTRISAYQPTEHEIVERRGGLPVAPS 257 (309)
Q Consensus 226 ~~~l~-----------~~~~~~~~~~~~~~i~~~c~GlPLai~ 257 (309)
.+.+. .........+.++.++..++|.|.-+.
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHH
Confidence 44433 001001223456678899999886443
No 46
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=3.8e-06 Score=80.17 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=44.3
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|.+...+.|.+++..++ .+.+.++|+.|+||||+|+.+++....
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4456789999999999999997665 467799999999999999999887643
No 47
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=3.4e-06 Score=79.69 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=44.2
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|-+..++.|.+++..+.. ..+.++|+.|+||||+|+.+++....
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45567899999999999999977665 45789999999999999999987653
No 48
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=5.5e-06 Score=77.35 Aligned_cols=50 Identities=18% Similarity=0.362 Sum_probs=42.5
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
|....+++|.+..++.|.+.+..+.. +.+.++|+.|+||||+|+.++...
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH
Confidence 44567899999999999988876665 479999999999999999998754
No 49
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=7.1e-06 Score=77.16 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=43.5
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|-+..+..|...+..+. .+.+.++|+.|+||||+|+.+++....
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4456788999999999988776655 468899999999999999999987654
No 50
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=4.3e-06 Score=80.47 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=43.7
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|-+..++.|.+.+..++. +.+.++|..|+||||+|+.+++....
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 44567899999999999999977665 44689999999999999999887654
No 51
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.5e-06 Score=80.31 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=44.3
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|-+..+..|..++..+.. +.+.++|+.|+||||+|+.+++....
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 44567899999999999999887765 46899999999999999999987654
No 52
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=4.8e-06 Score=75.37 Aligned_cols=120 Identities=17% Similarity=0.168 Sum_probs=85.7
Q ss_pred CCCcccccchHHHHHHHHHHhh----cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHH
Q 043850 79 VKDYEIFDSRKEIFQVVMESLK----DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQ 154 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 154 (309)
..++....||+.++..+.+++. ......+-|.|.+|.|||.+...++.+......-..++++++..-.....++..
T Consensus 146 t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 146 TAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred cCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 3456778999999999999984 345788999999999999999999988776422335678887776677778888
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhcC-CeEEEEEeCCCCccC
Q 043850 155 FAFDLGMKLDLNDSTLERTDGLRKRLNKE-MRVLIILDNIWTKLE 198 (309)
Q Consensus 155 i~~~l~~~~~~~~~~~~~~~~l~~~L~~~-~r~LlVlDdv~~~~~ 198 (309)
|...+-.....+....+....+.+...+. +.+|+|+|.++....
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~t 270 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLIT 270 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhh
Confidence 87776221111122245566666666554 368999999876543
No 53
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.42 E-value=6.6e-06 Score=73.40 Aligned_cols=50 Identities=16% Similarity=0.073 Sum_probs=42.2
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
|....+++|.++..+.+..++..+. +.++.++|++|+|||++|+.+++..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4566788999999999999987665 4566779999999999999998865
No 54
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=1.2e-05 Score=72.86 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=44.1
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|.....++|.++..+.|.+.+..+.. ..+.++|+.|+||+++|..+++..-.
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence 44567889999999999999877664 56899999999999999999988754
No 55
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.42 E-value=8.1e-06 Score=74.85 Aligned_cols=47 Identities=32% Similarity=0.333 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 83 EIFDSRKEIFQVVMESLKD-------------DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.++.|+++.+++|.+.+.. ..++-|.++|++|+|||++|+.+++...
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC
Confidence 3567999999998887621 2456799999999999999999998765
No 56
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.42 E-value=2.4e-06 Score=78.30 Aligned_cols=111 Identities=18% Similarity=0.197 Sum_probs=74.0
Q ss_pred ccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCC
Q 043850 83 EIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMK 162 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 162 (309)
.+.++.++.++.+...|... +.+.++|++|+|||++|+.+++.......|..+.||.+++..+..+++..+.-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 45678889999999988643 577889999999999999999988766678899999999888776655422100 000
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCccC
Q 043850 163 LDLNDSTLERTDGLRKRLNK-EMRVLIILDNIWTKLE 198 (309)
Q Consensus 163 ~~~~~~~~~~~~~l~~~L~~-~~r~LlVlDdv~~~~~ 198 (309)
.. ....-....+...... .++++||+|++.....
T Consensus 252 y~--~~~G~f~~~~~~A~~~p~~~~vliIDEINRani 286 (459)
T PRK11331 252 FR--RKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL 286 (459)
T ss_pred eE--ecCchHHHHHHHHHhcccCCcEEEEehhhccCH
Confidence 00 0001112222222221 2479999999977653
No 57
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=1.5e-05 Score=71.86 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=44.5
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|.....++|.++....|...+..+. +..+.|+|+.|+||||+|..+++..-.
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4466788999999999999987665 456999999999999999999988754
No 58
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=5.5e-06 Score=79.71 Aligned_cols=51 Identities=22% Similarity=0.383 Sum_probs=43.7
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|....+++|.+..++.|.+++..++. +.+.++|..|+||||+|+.+++...
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 44567899999999999999977664 5689999999999999999988754
No 59
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.39 E-value=2.4e-06 Score=83.58 Aligned_cols=52 Identities=29% Similarity=0.464 Sum_probs=42.2
Q ss_pred CCCcccccchHHHHH---HHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQ---VVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+|+|.+..+. .|...+..+....+.++|++|+||||||+.+++....
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~ 78 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA 78 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455678999998874 5666677777778899999999999999999987643
No 60
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.37 E-value=1.9e-05 Score=71.61 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=42.8
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|.....++|.++.++.|.+++..+.. +.+.++|++|+|||++|+.++....
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34556789999999999999876654 5678999999999999999988764
No 61
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=7.6e-06 Score=77.79 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=44.0
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|++..++.|.+++..+. .+.+.++|+.|+||||+|+.+++....
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4456789999999999999986654 457889999999999999999987653
No 62
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=8.1e-06 Score=74.60 Aligned_cols=47 Identities=9% Similarity=0.151 Sum_probs=39.7
Q ss_pred ccccchHHHHHHHHHHhhcCC----------CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 83 EIFDSRKEIFQVVMESLKDDK----------LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~~~----------~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..++|-+..++.|.+.+..+. .+.+.++|++|+|||++|..++....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 468899999999999987643 46688999999999999999987654
No 63
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=9.8e-06 Score=80.41 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=43.8
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|.+..++.|..++..++. +.+.++|..|+||||+|+.+++....
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCc
Confidence 34567889999999999999977665 45789999999999999999988753
No 64
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=9.4e-06 Score=77.12 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=43.4
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|-+..++.|.+++..++. +.+.++|+.|+||||+|+.+++....
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34567889999999999999977665 45689999999999999999887643
No 65
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.1e-05 Score=77.45 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=43.0
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|....+++|-+..++.|.+++..++. ..+.++|..|+||||+|+.+++...
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44567899999999999999877655 5678999999999999999987764
No 66
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.34 E-value=4.6e-06 Score=75.91 Aligned_cols=48 Identities=29% Similarity=0.324 Sum_probs=38.9
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 83 EIFDSRKEIFQVVMESLKD-------------DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.++.|+++.+++|.+.+.- ..++-+.|+|++|+|||+||+.+++....
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~ 182 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA 182 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC
Confidence 4678999999999887631 13566999999999999999999987654
No 67
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=1.4e-05 Score=76.82 Aligned_cols=52 Identities=15% Similarity=0.326 Sum_probs=44.3
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|.+..++.|.+.+..++. ..+.++|+.|+||||+|+.+++....
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 44567899999999999999977654 57899999999999999999987653
No 68
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=8.6e-06 Score=74.93 Aligned_cols=52 Identities=25% Similarity=0.296 Sum_probs=43.7
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCc-EEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLK-VIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|.+...+.|..++.++..+ .+.++|+.|+||||+|..+++....
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 445678899999999999998776654 5889999999999999999988754
No 69
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.26 E-value=1.6e-05 Score=67.44 Aligned_cols=59 Identities=10% Similarity=0.171 Sum_probs=37.2
Q ss_pred ccccc-chHH-HHHHHHHHhh-cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEe
Q 043850 82 YEIFD-SRKE-IFQVVMESLK-DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEV 142 (309)
Q Consensus 82 ~~~~~-gR~~-~~~~l~~~L~-~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 142 (309)
.++|+ |..+ .+..+.++.. ......+.|+|..|+|||+||..+++..... -....+++.
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~--~~~~~~i~~ 78 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG--GRNARYLDA 78 (227)
T ss_pred hcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeh
Confidence 44555 4433 3444444433 2345688999999999999999999876433 123445554
No 70
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=3e-05 Score=74.21 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=43.9
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCc-EEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLK-VIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|.+..++.|.+++..+... .+.++|+.|+||||+|+.+++....
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 445678999999999999999876654 5789999999999999999987653
No 71
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.25 E-value=4e-06 Score=64.38 Aligned_cols=23 Identities=39% Similarity=0.424 Sum_probs=21.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhh
Q 043850 107 IGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 107 i~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|.|+|++|+|||++|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 72
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.4e-05 Score=75.30 Aligned_cols=52 Identities=25% Similarity=0.315 Sum_probs=43.9
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|.+..+..|.+.+..+.. ..+.++|+.|+||||+|+.+++....
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44567899999999999998877655 55889999999999999999988754
No 73
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.24 E-value=4e-05 Score=62.99 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=29.3
Q ss_pred HHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 94 VVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 94 ~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.|.+.+..+.. ..+.++|+.|+|||++|+.+......
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45556655554 67899999999999999999888654
No 74
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=4.3e-05 Score=73.11 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=43.2
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|-+..++.|.+.+..+. .+.+.++|+.|+||||+|+.+++....
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 4456778999999899888887665 477889999999999999999987753
No 75
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=3.7e-05 Score=74.20 Aligned_cols=51 Identities=18% Similarity=0.310 Sum_probs=42.7
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|....+++|.+..++.|..++..+.. +.+.++|+.|+||||+|+.+++...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44567899999999999988876554 5678999999999999999998765
No 76
>PRK08727 hypothetical protein; Validated
Probab=98.23 E-value=8.3e-06 Score=69.47 Aligned_cols=105 Identities=12% Similarity=0.152 Sum_probs=62.0
Q ss_pred cccccchH-HHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhC
Q 043850 82 YEIFDSRK-EIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLG 160 (309)
Q Consensus 82 ~~~~~gR~-~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 160 (309)
.++|++.. ..+..+...........+.|+|.+|+|||.|+..+++..... ...+.|+++.+ ....
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~------ 83 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGR------ 83 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhh------
Confidence 44565444 334443333333344679999999999999999999886654 33556666432 1111
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCc
Q 043850 161 MKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~ 214 (309)
.....+.+.+ .-+||+||+..... .....+..+|+||+..
T Consensus 84 ------------~~~~~~~l~~--~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~ 136 (233)
T PRK08727 84 ------------LRDALEALEG--RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQM 136 (233)
T ss_pred ------------HHHHHHHHhc--CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 1112223332 46999999965432 1122456699999875
No 77
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.23 E-value=1.1e-05 Score=68.74 Aligned_cols=59 Identities=12% Similarity=0.247 Sum_probs=40.5
Q ss_pred cccc-c-hHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEec
Q 043850 83 EIFD-S-RKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT 143 (309)
Q Consensus 83 ~~~~-g-R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 143 (309)
.+|+ | -...+..+.++....+.+.+.|+|++|+|||+|++.+++..... -..+.++++.
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~ 82 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLD 82 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHH
Confidence 4454 4 33345555555444555789999999999999999999876643 3456677654
No 78
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.22 E-value=8e-06 Score=80.90 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=43.4
Q ss_pred CcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 81 DYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
....++||++++.++++.|......-+.++|++|+|||++|+.+++....
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34578999999999999997766677889999999999999999998743
No 79
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=5.2e-05 Score=71.32 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=42.4
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|.....++|.+.....|.+++..+.. +.+.++|+.|+||||+|+.++....
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567889999999999999976654 4567899999999999999988754
No 80
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.20 E-value=1.1e-05 Score=80.89 Aligned_cols=101 Identities=20% Similarity=0.330 Sum_probs=64.3
Q ss_pred ccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccC---C-CeEEEEEecCCCCHHHHHHHHHHH
Q 043850 83 EIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKL---F-DKVVMAEVTQTPDYRKIEDQFAFD 158 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f-~~~~wv~~~~~~~~~~~~~~i~~~ 158 (309)
..++||+++++++++.|......-+.++|++|+|||++|..++........ . ...+|. + +...++ .
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c-
Confidence 568999999999999997766667789999999999999999988653211 1 234442 1 111111 1
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 043850 159 LGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 159 l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
+.... ...++....+.+.+...++.+|++|++...
T Consensus 249 -g~~~~--ge~e~rl~~i~~~~~~~~~~ILfiDEih~l 283 (821)
T CHL00095 249 -GTKYR--GEFEERLKRIFDEIQENNNIILVIDEVHTL 283 (821)
T ss_pred -cCCCc--cHHHHHHHHHHHHHHhcCCeEEEEecHHHH
Confidence 11111 122334444444444444799999999643
No 81
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=7.3e-05 Score=68.17 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=43.7
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|.+...+.+.+.+.++.. +.+.++|++|+|||++|..+++....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34567889999999999999977654 58889999999999999999887643
No 82
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.19 E-value=3.9e-05 Score=72.72 Aligned_cols=51 Identities=27% Similarity=0.227 Sum_probs=36.4
Q ss_pred CCcccccchHHHHHHHHHHh---hc---------CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 80 KDYEIFDSRKEIFQVVMESL---KD---------DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
....++.|-++..+++.+.+ .. ..++-+.++|++|+|||+||+.+++....
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~ 114 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 114 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34567888877666555443 21 23456889999999999999999986543
No 83
>PRK09087 hypothetical protein; Validated
Probab=98.18 E-value=3.2e-05 Score=65.48 Aligned_cols=26 Identities=31% Similarity=0.224 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..+.+.|+|.+|+|||+|++.++...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 34679999999999999999988754
No 84
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.15 E-value=1.4e-05 Score=61.55 Aligned_cols=91 Identities=23% Similarity=0.122 Sum_probs=54.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKE 183 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 183 (309)
...+.|+|++|+||||+++.++....... ..+++++.+........... ....... ............+.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGK-KASGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhcc-CCCCCHHHHHHHHHHHHHhc
Confidence 36789999999999999999998876542 34666665543322111111 1111111 11123334444555555554
Q ss_pred CeEEEEEeCCCCccC
Q 043850 184 MRVLIILDNIWTKLE 198 (309)
Q Consensus 184 ~r~LlVlDdv~~~~~ 198 (309)
+..+|++|++.....
T Consensus 78 ~~~viiiDei~~~~~ 92 (148)
T smart00382 78 KPDVLILDEITSLLD 92 (148)
T ss_pred CCCEEEEECCcccCC
Confidence 349999999988766
No 85
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.9e-05 Score=67.52 Aligned_cols=114 Identities=24% Similarity=0.284 Sum_probs=78.4
Q ss_pred cccccchHHHHHHHHHHhhc-------------CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCH
Q 043850 82 YEIFDSRKEIFQVVMESLKD-------------DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDY 148 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 148 (309)
+.++-|-++++++|.+..+- +.++=|.++|++|.|||-||++|+++.... | +.+..
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--F-----Irvvg---- 218 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--F-----IRVVG---- 218 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--E-----EEecc----
Confidence 44567899999999888631 357889999999999999999999987765 3 33322
Q ss_pred HHHHHHHHHH-hCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--------------------------CCC
Q 043850 149 RKIEDQFAFD-LGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE--------------------------KDD 201 (309)
Q Consensus 149 ~~~~~~i~~~-l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~--------------------------~~~ 201 (309)
.++.+. +|. ...+...+.+.-+.+.+++|++|.++.... ...
T Consensus 219 ----SElVqKYiGE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 219 ----SELVQKYIGE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ----HHHHHHHhcc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 122222 221 134555666666667789999999966433 344
Q ss_pred CCCcEEEEeeCCcccc
Q 043850 202 QERCTIVLISRSRDLL 217 (309)
Q Consensus 202 ~~gs~iliTtR~~~v~ 217 (309)
....|||..|--.++.
T Consensus 288 ~~nvKVI~ATNR~D~L 303 (406)
T COG1222 288 RGNVKVIMATNRPDIL 303 (406)
T ss_pred CCCeEEEEecCCcccc
Confidence 5677888888776654
No 86
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=5.8e-05 Score=73.35 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=42.8
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|.....++|.+..++.|..++..++ .+.+.++|+.|+||||+|+.++...-
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4456788999999999999997665 45678999999999999999987754
No 87
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.12 E-value=5.4e-05 Score=73.37 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=44.5
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
|...+.++|++..+..+.+.+.......+.|+|++|+||||||+.+++.....
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~ 202 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKL 202 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 44556789999999999888876667789999999999999999998877543
No 88
>PRK08116 hypothetical protein; Validated
Probab=98.11 E-value=3.5e-05 Score=66.93 Aligned_cols=94 Identities=15% Similarity=0.229 Sum_probs=58.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEM 184 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~ 184 (309)
..+.|+|.+|+|||.||..+++....+ ...+++++ ..+++..+......... .+ ...+.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~--~~----~~~~~~~l~~~- 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK--ED----ENEIIRSLVNA- 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc--cc----HHHHHHHhcCC-
Confidence 458899999999999999999998754 34456665 34556666555432211 11 22334445443
Q ss_pred eEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCc
Q 043850 185 RVLIILDNIWTKLE-------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 185 r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~ 214 (309)
=||||||+..... .....+..+|+||...
T Consensus 180 -dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 -DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4899999943221 1223455688888765
No 89
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=8.9e-05 Score=69.23 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=43.5
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|.+..++.|.+++..+.. +.+.++|+.|+||||+|+.+++....
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 34567889999999999999976654 56889999999999999999887643
No 90
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00013 Score=70.58 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=43.0
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|.....++|.+...+.|..++..+.. +.+.++|+.|+||||+|+.++....
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567889999999999999977665 5588999999999999999988764
No 91
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.09 E-value=0.00015 Score=66.48 Aligned_cols=48 Identities=27% Similarity=0.259 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHHHhh----c---------CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 83 EIFDSRKEIFQVVMESLK----D---------DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.++.|-+...++|.+.+. . ..++-+.++|++|+|||+||+.+++....
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~ 205 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA 205 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC
Confidence 356788888888777652 1 24577999999999999999999987543
No 92
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=0.00017 Score=68.26 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=42.7
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCc-EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLK-VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|....+++|-+...+.|...+..+..+ .+.++|+.|+||||+|+.+++..-
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 445678999999999999998776654 668999999999999999988764
No 93
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=0.00016 Score=69.40 Aligned_cols=51 Identities=24% Similarity=0.254 Sum_probs=42.9
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|.....++|.+...+.|.+++..+. .+.+.++|+.|+|||++|+.++....
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4456789999999999999997655 45677899999999999999987754
No 94
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.08 E-value=2.8e-05 Score=77.93 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=44.2
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 80 KDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.....++||++++.++++.|......-+.++|.+|+|||++|..++.....
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 345678999999999999997777677889999999999999999988743
No 95
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=7.3e-05 Score=71.93 Aligned_cols=52 Identities=13% Similarity=0.271 Sum_probs=43.6
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|.+...+.|.+.+..+.. +.+.++|+.|+||||+|+.+++....
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 44567899999999999999877665 56789999999999999999887643
No 96
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.05 E-value=5.8e-05 Score=69.80 Aligned_cols=48 Identities=27% Similarity=0.311 Sum_probs=37.9
Q ss_pred ccccchHHHHHHHHHHhh----c---------CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 83 EIFDSRKEIFQVVMESLK----D---------DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.++.|.++.+++|.+.+. . ..+.-+.|+|++|+|||+||+.+++....
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~ 243 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA 243 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 456788988888887763 1 23567889999999999999999997653
No 97
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.03 E-value=0.00016 Score=67.55 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=90.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKE 183 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 183 (309)
...+.|+|..|+|||+|++.+++.......-..+++++. .++...+...++... .....+++.+..
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~~~- 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEICQ- 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHhcc-
Confidence 356899999999999999999987654322234455543 456666666654210 123344444443
Q ss_pred CeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCccccccc--------cCCCceEecC------------
Q 043850 184 MRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRDLLCND--------MNSQKDFWID------------ 230 (309)
Q Consensus 184 ~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~v~~~~--------~~~~~~~~l~------------ 230 (309)
.-+|||||+..... .....+..||+|+....-.... +...-...+.
T Consensus 207 -~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 207 -NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred -CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 45899999965442 1223445688887755311111 1111122222
Q ss_pred ----C-CCCCCCCcHHHHHHHHHhCCCchHHHHHHHHhc-----C---CC--hHHHHHHHHHh
Q 043850 231 ----D-STRISAYQPTEHEIVERRGGLPVAPSTIANALK-----S---KS--VAIWKDALNQL 278 (309)
Q Consensus 231 ----~-~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l~-----~---~~--~~~w~~~l~~l 278 (309)
. .....-.++....|++.++|.|-.+..+...+. . +. .+.-+.++..+
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 1 111134466788899999998877766554331 1 22 45555666554
No 98
>PRK10536 hypothetical protein; Provisional
Probab=98.02 E-value=0.00014 Score=61.93 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=43.1
Q ss_pred CcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEE
Q 043850 81 DYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMA 140 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 140 (309)
....+.+|......++.++.+. ..|.+.|.+|+|||+||..++.+.-..+.|..++-.
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~ 110 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVT 110 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEe
Confidence 3455678888888899888654 599999999999999999998853322335544443
No 99
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00021 Score=69.14 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=43.2
Q ss_pred CCcccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 80 KDYEIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.....++|.+.....|..++.... .+.+.++|+.|+||||+|+.+++....
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 345678999999999999987654 367889999999999999999988754
No 100
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.01 E-value=0.00022 Score=65.98 Aligned_cols=94 Identities=22% Similarity=0.326 Sum_probs=57.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKE 183 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 183 (309)
...+.|+|..|+|||+|++.+++.......-..+++++. .++...+...+... . ...+.+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~----~~~~~~~~~~- 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----K----MEEFKEKYRS- 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----C----HHHHHHHHHh-
Confidence 357899999999999999999998765411124566653 34444555544321 1 2233444443
Q ss_pred CeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCc
Q 043850 184 MRVLIILDNIWTKLE-------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 184 ~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~ 214 (309)
.-+|||||+..... .....+..+|+||...
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~ 242 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRP 242 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 35889999975432 1112455688887654
No 101
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.01 E-value=0.0002 Score=60.45 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=42.5
Q ss_pred CCcccccchHHHHHHHHHHh----hcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 80 KDYEIFDSRKEIFQVVMESL----KDDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.....++|-+.+.+.|++.. ......-+.++|..|+|||+|++.+.+....+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 35568899999988887765 23456778899999999999999999887765
No 102
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.01 E-value=0.00019 Score=66.84 Aligned_cols=94 Identities=18% Similarity=0.287 Sum_probs=58.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCC-eEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFD-KVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNK 182 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 182 (309)
...+.|+|.+|+|||+|++.+++..... +.. .++|++. .+++..+...+... .. ..+.+.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~----~~f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEG-----KL----NEFREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhcc-----cH----HHHHHHHHh
Confidence 4569999999999999999999987654 223 5667754 34556665555321 11 223333333
Q ss_pred CCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCc
Q 043850 183 EMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 183 ~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~ 214 (309)
. .-+|+|||+..... .....+..||+||...
T Consensus 194 ~-~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~ 237 (440)
T PRK14088 194 K-VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_pred c-CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 2 46899999975432 1122345688887533
No 103
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.98 E-value=3.6e-05 Score=65.13 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=30.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEec
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT 143 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 143 (309)
-.++|+|..|+|||||+..+....... |.++++++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEecC
Confidence 467899999999999999999887765 8888777543
No 104
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00013 Score=68.47 Aligned_cols=95 Identities=14% Similarity=0.188 Sum_probs=61.4
Q ss_pred cccccchHHHHHHHHHHhh---c---------CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHH
Q 043850 82 YEIFDSRKEIFQVVMESLK---D---------DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYR 149 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 149 (309)
..++-|-+..+.+|.+.+. . ..++=|.++|++|+|||.||+.+++...+- | +.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f-----~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--F-----LSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--e-----Eeecch----
Confidence 3467789998888887762 1 246779999999999999999999988765 2 333221
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc
Q 043850 150 KIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKL 197 (309)
Q Consensus 150 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~ 197 (309)
+|...+.. .+ ++.+..+.+.-.+.-++++++|+++...
T Consensus 258 ----eivSGvSG-----ES-EkkiRelF~~A~~~aPcivFiDeIDAI~ 295 (802)
T KOG0733|consen 258 ----EIVSGVSG-----ES-EKKIRELFDQAKSNAPCIVFIDEIDAIT 295 (802)
T ss_pred ----hhhcccCc-----cc-HHHHHHHHHHHhccCCeEEEeecccccc
Confidence 11111110 22 3334444444444458999999997654
No 105
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.97 E-value=2.3e-05 Score=64.96 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=72.9
Q ss_pred cCCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHH
Q 043850 78 DVKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAF 157 (309)
Q Consensus 78 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 157 (309)
.|....++||-++.++.|.-...+.+.+-+.|.||+|+||||-+..+++..-...+=+.++=.+.|++..++-+-..|-.
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~ 101 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKM 101 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHH
Confidence 35556789999999999888778888999999999999999999999988776544456666777766655444333322
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 158 DLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 158 ~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
...... .|-.++.-++|||..++...
T Consensus 102 FAQ~kv---------------~lp~grhKIiILDEADSMT~ 127 (333)
T KOG0991|consen 102 FAQKKV---------------TLPPGRHKIIILDEADSMTA 127 (333)
T ss_pred HHHhhc---------------cCCCCceeEEEeeccchhhh
Confidence 111000 01112346788888877655
No 106
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.97 E-value=0.00016 Score=61.83 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=43.7
Q ss_pred CCCcccccchHHHHHHHHHHhh-----cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLK-----DDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
|....+|+|-++..++|.=.+. .+..--+.++|++|.||||||.-+++...+.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 4456789999988888766653 3456789999999999999999999988765
No 107
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.96 E-value=4.5e-05 Score=76.66 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=43.6
Q ss_pred CcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 81 DYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
....++||+.++.++++.|.......+.++|.+|+|||+||..++.....
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 34678999999999999997777777889999999999999999988643
No 108
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00015 Score=66.89 Aligned_cols=49 Identities=29% Similarity=0.247 Sum_probs=38.7
Q ss_pred ccccchH---HHHHHHHHHhhcC---------CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 83 EIFDSRK---EIFQVVMESLKDD---------KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 83 ~~~~gR~---~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.++.|-+ .|++++++.|.++ =++=|.++|++|.|||-||+.++....+-
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP 364 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP 364 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC
Confidence 4455654 5788889988653 15779999999999999999999877765
No 109
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.96 E-value=5.8e-05 Score=65.09 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=55.0
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEE-EEEecCC
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVV-MAEVTQT 145 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~ 145 (309)
|....++.|-+..+..|.+.+.....+....+|++|.|||+.|+.++...-..+.|.+++ =.++|..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 555678899999999999999887789999999999999999999999887766777544 3455443
No 110
>PRK05642 DNA replication initiation factor; Validated
Probab=97.95 E-value=8.2e-05 Score=63.41 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=52.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKE 183 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 183 (309)
...+.|+|..|+|||.|++.+++....+ -..++|++..+ +... ...+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR------------------GPELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh------------------hHHHHHhhhhC
Confidence 3678999999999999999999876543 24567776532 1110 01233334332
Q ss_pred CeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCcc
Q 043850 184 MRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 184 ~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~ 215 (309)
=+||+||+..... .....|..+|+|++...
T Consensus 99 --d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 99 --ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred --CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 3678899964321 22334667899888654
No 111
>PRK08118 topology modulation protein; Reviewed
Probab=97.95 E-value=5.9e-06 Score=66.60 Aligned_cols=35 Identities=34% Similarity=0.462 Sum_probs=29.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcc-cCCCeEEE
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMED-KLFDKVVM 139 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 139 (309)
+.|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987654 35677776
No 112
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.95 E-value=5e-05 Score=71.32 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=39.2
Q ss_pred cccccchHHHHHHHHHHhhc-------------CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 82 YEIFDSRKEIFQVVMESLKD-------------DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..++.|.+..+++|.+.+.- ..++-+.++|++|+|||++|+.+++....
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 45677899999888887521 23567999999999999999999998754
No 113
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.94 E-value=5.6e-05 Score=63.73 Aligned_cols=95 Identities=22% Similarity=0.288 Sum_probs=62.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKE 183 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 183 (309)
...+.|+|..|+|||.|.+.+++.......-..+++++. .++...+...+.. .....+++.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~---------~~~~~~~~~~~~- 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRD---------GEIEEFKDRLRS- 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHT---------TSHHHHHHHHCT-
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHc---------ccchhhhhhhhc-
Confidence 457899999999999999999998776422225666653 4555555555532 112345555654
Q ss_pred CeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCcc
Q 043850 184 MRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 184 ~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~ 215 (309)
-=+|+|||+..... .....|.++|+|+....
T Consensus 98 -~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P 141 (219)
T PF00308_consen 98 -ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPP 141 (219)
T ss_dssp -SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-T
T ss_pred -CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCC
Confidence 36899999977654 22335668999997663
No 114
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00025 Score=67.85 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=43.7
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|....+++|-+..++.|..++.++.. +.+.++|+.|+||||+|+.+++....
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 44567889999999999999977654 56889999999999999999987653
No 115
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.93 E-value=0.00012 Score=65.70 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=66.9
Q ss_pred HHHHHHHhhc-CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCe-EEEEEecCCC-CHHHHHHHHHHHhCCCCCCCCC
Q 043850 92 FQVVMESLKD-DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDK-VVMAEVTQTP-DYRKIEDQFAFDLGMKLDLNDS 168 (309)
Q Consensus 92 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~ 168 (309)
..++++.+.. ..-.-+.|+|.+|+|||||++.+++..... +-+. ++|+-+.+.. .+.++++.++..+..+......
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3446666643 233567999999999999999999887654 3343 5777777654 6788888888877654322111
Q ss_pred H-----HHHHHHHHHHH-hcCCeEEEEEeCCCC
Q 043850 169 T-----LERTDGLRKRL-NKEMRVLIILDNIWT 195 (309)
Q Consensus 169 ~-----~~~~~~l~~~L-~~~~r~LlVlDdv~~ 195 (309)
. ......+.+++ ..+++++||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1 11222233333 345689999999954
No 116
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.92 E-value=0.00044 Score=64.83 Aligned_cols=94 Identities=21% Similarity=0.299 Sum_probs=57.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKE 183 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 183 (309)
...+.|+|.+|+|||+|++.+++.......-..+++++.. ++...+...+... . ...+.+.+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~----~~~~~~~~~~- 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----T----MEEFKEKYRS- 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----c----HHHHHHHHhc-
Confidence 3578999999999999999999988754212245666543 3344444444211 1 2233444443
Q ss_pred CeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCc
Q 043850 184 MRVLIILDNIWTKLE-------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 184 ~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~ 214 (309)
.-+|||||+..... .....+..+|+||...
T Consensus 212 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~ 254 (450)
T PRK00149 212 -VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRP 254 (450)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 45899999965322 1122345588877654
No 117
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.91 E-value=6.2e-05 Score=62.93 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=55.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHh-C---CC--CCCCCCHH---HHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDL-G---MK--LDLNDSTL---ERTD 174 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-~---~~--~~~~~~~~---~~~~ 174 (309)
-.++.|+|.+|+|||+|+.+++...... -..++|++... ++...+.. ++... . .. .....+.. ....
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 4789999999999999999998776543 46789999876 55554443 32221 0 00 00012222 3355
Q ss_pred HHHHHHhcCCeEEEEEeCCCC
Q 043850 175 GLRKRLNKEMRVLIILDNIWT 195 (309)
Q Consensus 175 ~l~~~L~~~~r~LlVlDdv~~ 195 (309)
.+.+.+...+.-+||+|.+..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHH
Confidence 555556554467999999854
No 118
>PHA00729 NTP-binding motif containing protein
Probab=97.88 E-value=8.1e-05 Score=62.36 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=28.9
Q ss_pred HHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 94 VVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 94 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+++.+...+...|.|.|.+|+||||||..+++..-
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555556667899999999999999999998753
No 119
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.87 E-value=8e-05 Score=75.05 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=43.0
Q ss_pred CcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 81 DYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
....++||++++.+++..|.......+.++|.+|+|||++|..++.....
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34568999999999999997766677789999999999999999988643
No 120
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.87 E-value=8.8e-05 Score=63.17 Aligned_cols=91 Identities=23% Similarity=0.235 Sum_probs=58.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccC----CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------CCCH-
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKL----FDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL---------NDST- 169 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~- 169 (309)
-.++.|+|.+|+|||+|+.+++........ ...++|++....++...+ .++++..+..... ..+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCHH
Confidence 478999999999999999999865332211 257899998877665443 3344444332111 1222
Q ss_pred --HHHHHHHHHHHhcC-CeEEEEEeCCCC
Q 043850 170 --LERTDGLRKRLNKE-MRVLIILDNIWT 195 (309)
Q Consensus 170 --~~~~~~l~~~L~~~-~r~LlVlDdv~~ 195 (309)
......+.+.+... +.-|||+|.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 23445555666554 578999999964
No 121
>PRK12377 putative replication protein; Provisional
Probab=97.85 E-value=0.00016 Score=61.89 Aligned_cols=76 Identities=18% Similarity=0.237 Sum_probs=49.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNK 182 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 182 (309)
+...+.|+|.+|+|||+||..+++..... ...++++++ .+++..|-...... .. ...+.+.+..
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~------~~l~~~l~~~~~~~----~~----~~~~l~~l~~ 163 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTV------PDVMSRLHESYDNG----QS----GEKFLQELCK 163 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEH------HHHHHHHHHHHhcc----ch----HHHHHHHhcC
Confidence 34689999999999999999999988754 344566654 34555554443211 11 1233444443
Q ss_pred CCeEEEEEeCCCCc
Q 043850 183 EMRVLIILDNIWTK 196 (309)
Q Consensus 183 ~~r~LlVlDdv~~~ 196 (309)
.-||||||+...
T Consensus 164 --~dLLiIDDlg~~ 175 (248)
T PRK12377 164 --VDLLVLDEIGIQ 175 (248)
T ss_pred --CCEEEEcCCCCC
Confidence 579999999443
No 122
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.84 E-value=6.9e-05 Score=66.37 Aligned_cols=86 Identities=19% Similarity=0.266 Sum_probs=58.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----NDSTLERTDGLR 177 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 177 (309)
.-+++-|+|++|+||||||.+++...... -..++|++....++.. .+++++.+... +...++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34789999999999999999988776543 3567899877655542 35555544221 244555666665
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 043850 178 KRLNKEMRVLIILDNIWT 195 (309)
Q Consensus 178 ~~L~~~~r~LlVlDdv~~ 195 (309)
..++....-+||+|.+..
T Consensus 127 ~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHhhccCCcEEEEcchhh
Confidence 555554467999999853
No 123
>CHL00176 ftsH cell division protein; Validated
Probab=97.83 E-value=0.0004 Score=67.39 Aligned_cols=48 Identities=27% Similarity=0.225 Sum_probs=34.3
Q ss_pred cccccchHHHHHHHHHH---hhcC---------CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 82 YEIFDSRKEIFQVVMES---LKDD---------KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~---L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..++.|.++..+++.+. +... .++-+.++|++|+|||+||+.+++...
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~ 241 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE 241 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45677877655555444 3321 245689999999999999999988654
No 124
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.82 E-value=7e-05 Score=66.38 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=58.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----NDSTLERTDGLRK 178 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 178 (309)
-+++-|+|++|+||||||.+++...... -..++|++....++.. .++.++.+.+. +.+.++....+..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 4788999999999999999988766543 4578899887766542 34555543221 3455666666666
Q ss_pred HHhcCCeEEEEEeCCC
Q 043850 179 RLNKEMRVLIILDNIW 194 (309)
Q Consensus 179 ~L~~~~r~LlVlDdv~ 194 (309)
.+.....-+||+|.+.
T Consensus 128 li~s~~~~lIVIDSva 143 (325)
T cd00983 128 LVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHhccCCCEEEEcchH
Confidence 5555556799999974
No 125
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.82 E-value=2.2e-05 Score=77.36 Aligned_cols=101 Identities=20% Similarity=0.291 Sum_probs=63.2
Q ss_pred ccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhccc-C---CCeEEEEEecCCCCHHHHHHHHHHH
Q 043850 83 EIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDK-L---FDKVVMAEVTQTPDYRKIEDQFAFD 158 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~~~i~~~ 158 (309)
..++||++++.++++.|......-+.++|.+|+|||++|+.++....... . .++.+|.. ++.. ++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----lla- 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LLA- 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hhc-
Confidence 46899999999999999776556677999999999999999998753321 1 13444421 1111 111
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 043850 159 LGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 159 l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
+.... ...+.....+.+.+....+.+|++|++...
T Consensus 256 -G~~~~--Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L 290 (758)
T PRK11034 256 -GTKYR--GDFEKRFKALLKQLEQDTNSILFIDEIHTI 290 (758)
T ss_pred -ccchh--hhHHHHHHHHHHHHHhcCCCEEEeccHHHH
Confidence 11100 122334444444454434689999999754
No 126
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.82 E-value=0.00054 Score=54.86 Aligned_cols=111 Identities=18% Similarity=0.242 Sum_probs=67.8
Q ss_pred chHHHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhcccC------------------CCeEEEEEecCC--
Q 043850 87 SRKEIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVMEDKL------------------FDKVVMAEVTQT-- 145 (309)
Q Consensus 87 gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------------------f~~~~wv~~~~~-- 145 (309)
|-++..+.|.+.+..+.. ..+.++|+.|+||+++|..+++..-.... .....|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 556777888888876664 56899999999999999999887644322 223344433322
Q ss_pred -CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------CCCCCCcEEEEeeCCc
Q 043850 146 -PDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE----------KDDQERCTIVLISRSR 214 (309)
Q Consensus 146 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~----------~~~~~gs~iliTtR~~ 214 (309)
...+++. ++...+...... + +.=++|+||++.... .....++.+|++|.+.
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~~----------------~-~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPSE----------------G-KYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-TT----------------S-SSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred hhhHHHHH-HHHHHHHHHHhc----------------C-CceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 2333322 444444333222 2 357889999988765 3445678888888877
Q ss_pred c
Q 043850 215 D 215 (309)
Q Consensus 215 ~ 215 (309)
.
T Consensus 143 ~ 143 (162)
T PF13177_consen 143 S 143 (162)
T ss_dssp G
T ss_pred H
Confidence 5
No 127
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.81 E-value=0.00018 Score=60.87 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=57.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhccc----CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDK----LFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD---------LNDSTL 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 170 (309)
-.++.|+|.+|+|||+||.+++....... .=..++|++....++...+ ..+....+.... ...+.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeCCCHH
Confidence 47999999999999999999987654331 0156789988776665444 333333322111 023445
Q ss_pred HHHHHHHHHHh---cCCeEEEEEeCCCC
Q 043850 171 ERTDGLRKRLN---KEMRVLIILDNIWT 195 (309)
Q Consensus 171 ~~~~~l~~~L~---~~~r~LlVlDdv~~ 195 (309)
+....+.+... ..+.-|+|+|.+..
T Consensus 98 ~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 98 QQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 55555555443 44467999999854
No 128
>PRK09354 recA recombinase A; Provisional
Probab=97.81 E-value=9e-05 Score=66.22 Aligned_cols=85 Identities=19% Similarity=0.259 Sum_probs=60.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----NDSTLERTDGLRK 178 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 178 (309)
-+++-|+|++|+||||||.+++...... -..++|++....++. ..++++|.+... +.+.++....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4789999999999999999988776543 467889988777665 245555554221 3445666666666
Q ss_pred HHhcCCeEEEEEeCCCC
Q 043850 179 RLNKEMRVLIILDNIWT 195 (309)
Q Consensus 179 ~L~~~~r~LlVlDdv~~ 195 (309)
.++....-+||+|.+-.
T Consensus 133 li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HhhcCCCCEEEEeChhh
Confidence 66555567999999853
No 129
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.79 E-value=0.00023 Score=58.89 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=52.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC-CCHHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT-PDYRKIEDQFAFDLGMKLDL---NDSTLERTDGLRKR 179 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 179 (309)
+++|.++|+.|+||||.+.+++.....+ -..+..++.... ....+-++..++.++.+... ..+..+......+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4789999999999999888888887765 445677776432 34556677777777765321 12333444333333
Q ss_pred HhcCCeEEEEEeCC
Q 043850 180 LNKEMRVLIILDNI 193 (309)
Q Consensus 180 L~~~~r~LlVlDdv 193 (309)
+..++.=++++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 33322235555554
No 130
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.79 E-value=0.00034 Score=59.73 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=54.0
Q ss_pred HHHHHHHHhhc--CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCC
Q 043850 91 IFQVVMESLKD--DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDS 168 (309)
Q Consensus 91 ~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 168 (309)
.+..+.+...+ .+...+.++|.+|+|||+||..+++..... -..+++++ ..+++..+-...... . .+
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~~--~-~~ 152 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSNS--E-TS 152 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhhc--c-cc
Confidence 44444444432 234578999999999999999999987654 34556664 345555554443211 0 11
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCcc
Q 043850 169 TLERTDGLRKRLNKEMRVLIILDNIWTKL 197 (309)
Q Consensus 169 ~~~~~~~l~~~L~~~~r~LlVlDdv~~~~ 197 (309)
...+.+.+.. .=||||||+....
T Consensus 153 ----~~~~l~~l~~--~dlLvIDDig~~~ 175 (244)
T PRK07952 153 ----EEQLLNDLSN--VDLLVIDEIGVQT 175 (244)
T ss_pred ----HHHHHHHhcc--CCEEEEeCCCCCC
Confidence 2233444543 4588999995543
No 131
>PRK08181 transposase; Validated
Probab=97.78 E-value=0.00017 Score=62.51 Aligned_cols=97 Identities=18% Similarity=0.199 Sum_probs=57.7
Q ss_pred HHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Q 043850 97 ESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGL 176 (309)
Q Consensus 97 ~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 176 (309)
+|+. ...-+.|+|++|+|||.||..+++..... ...++|++ ..+++..+...... .+.. .+
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~~-----~~~~----~~ 161 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARRE-----LQLE----SA 161 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHhC-----CcHH----HH
Confidence 4554 33569999999999999999999876543 33455554 34555555433211 1111 23
Q ss_pred HHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCcc
Q 043850 177 RKRLNKEMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 177 ~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~ 215 (309)
.+.+.+ .-||||||+..... .....+ .+||||....
T Consensus 162 l~~l~~--~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~~~ 210 (269)
T PRK08181 162 IAKLDK--FDLLILDDLAYVTKDQAETSVLFELISARYERR-SILITANQPF 210 (269)
T ss_pred HHHHhc--CCEEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcCCCH
Confidence 334433 46999999954322 111123 4888888763
No 132
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=0.0015 Score=62.60 Aligned_cols=93 Identities=19% Similarity=0.260 Sum_probs=57.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEM 184 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~ 184 (309)
..+.|+|..|+|||.|++.+++.......-..+++++. .++..++...+... ....+++.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~---------~~~~f~~~y~~-- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG---------KGDSFRRRYRE-- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc---------cHHHHHHHhhc--
Confidence 45899999999999999999998764311234566653 44444554443211 12233344443
Q ss_pred eEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCc
Q 043850 185 RVLIILDNIWTKLE-------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 185 r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~ 214 (309)
.=+|||||+..... .....+..||+||...
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~ 420 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRP 420 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 35889999966533 1223355688888865
No 133
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=5.5e-05 Score=65.64 Aligned_cols=84 Identities=18% Similarity=0.259 Sum_probs=51.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcc--cCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMED--KLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLN 181 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 181 (309)
.++|.++|++|.|||+|.+.+++....+ ..|....-+.+.. ..++......-| .....+.+++.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsESg------KlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSESG------KLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhhhh------hHHHHHHHHHHHHHh
Confidence 5889999999999999999999998653 3343333333322 222222221111 334566777777776
Q ss_pred cCCe-EEEEEeCCCCcc
Q 043850 182 KEMR-VLIILDNIWTKL 197 (309)
Q Consensus 182 ~~~r-~LlVlDdv~~~~ 197 (309)
.++. +.+.+|.|++..
T Consensus 247 d~~~lVfvLIDEVESLa 263 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVESLA 263 (423)
T ss_pred CCCcEEEEEeHHHHHHH
Confidence 6433 345578886653
No 134
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.00032 Score=62.63 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=72.7
Q ss_pred cccchHHHHHHHHHHhhc-CCCc-EEEEEeCCCCcHHHHHHHHHHHhhccc-------------------CCCeEEEEEe
Q 043850 84 IFDSRKEIFQVVMESLKD-DKLK-VIGVYGMGGVGKTTLVKQVAMKVMEDK-------------------LFDKVVMAEV 142 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~~-~~~~-vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~ 142 (309)
.++|-+....++..+... .+.+ .+.++|++|+||||+|..+++...... ..+.+..++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 356777788888888763 3344 599999999999999999999876432 1234455555
Q ss_pred cCCCC---HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------CCCCCCcEEEE
Q 043850 143 TQTPD---YRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE----------KDDQERCTIVL 209 (309)
Q Consensus 143 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~----------~~~~~gs~ili 209 (309)
+.... ..+..+++.+....... .+ +.-++++|+++.... ......+.+|+
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~-~~kviiidead~mt~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL----------------EG-GYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC----------------CC-CceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEE
Confidence 54433 34444444444433221 12 357888999877655 34456667777
Q ss_pred eeCCc
Q 043850 210 ISRSR 214 (309)
Q Consensus 210 TtR~~ 214 (309)
+|...
T Consensus 145 ~~n~~ 149 (325)
T COG0470 145 ITNDP 149 (325)
T ss_pred EcCCh
Confidence 77644
No 135
>PRK07261 topology modulation protein; Provisional
Probab=97.75 E-value=0.00014 Score=58.90 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=25.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcc-cCCCeEEE
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMED-KLFDKVVM 139 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~w 139 (309)
.|.|+|++|+||||||+.+....... -+.+...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998765432 13455555
No 136
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.75 E-value=0.00013 Score=60.48 Aligned_cols=126 Identities=16% Similarity=0.191 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEec----CCC-----C----HHHHHH
Q 043850 87 SRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT----QTP-----D----YRKIED 153 (309)
Q Consensus 87 gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~----~~~-----~----~~~~~~ 153 (309)
++..+-...++.|. ...++.+.|++|+|||.||...+.+.-..+.|+.++++.-. ++. + ..-.+.
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 34445556666665 45799999999999999999998776666778888877421 110 0 111122
Q ss_pred HHHHHhCCCCCCCCCHHHHHHH------HHHHHhcC--CeEEEEEeCCCCccC-------CCCCCCcEEEEeeCCcc
Q 043850 154 QFAFDLGMKLDLNDSTLERTDG------LRKRLNKE--MRVLIILDNIWTKLE-------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 154 ~i~~~l~~~~~~~~~~~~~~~~------l~~~L~~~--~r~LlVlDdv~~~~~-------~~~~~gs~iliTtR~~~ 215 (309)
-+...+..-... ...+.+.+. -..++++. ...+||+|++.+... ...+.+|++|++--...
T Consensus 82 p~~d~l~~~~~~-~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 82 PIYDALEELFGK-EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDPSQ 157 (205)
T ss_dssp HHHHHHTTTS-T-TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE----
T ss_pred HHHHHHHHHhCh-HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCcee
Confidence 222222221111 112221110 00122221 247999999987765 67788999999765543
No 137
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.73 E-value=0.00038 Score=59.47 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=68.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCC-------------------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKL------------------- 163 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------------- 163 (309)
.-+++.|.|.+|+|||+||.++....-.+ -..++|++... +..++.+.+. +++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~~ 94 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGGI 94 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEecccccc
Confidence 35789999999999999999987654332 45788888765 4445544432 222211
Q ss_pred -----------CCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC---------------CCCCCCcEEEEeeCCc
Q 043850 164 -----------DLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE---------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 164 -----------~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~---------------~~~~~gs~iliTtR~~ 214 (309)
....+..+....+.+.+...+.-++|+|.+..... .....|+.+++|+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~lk~~~~t~llt~~~~ 171 (237)
T TIGR03877 95 GEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITKPAMARSIVMQLKRVLSGLGCTSIFVSQVS 171 (237)
T ss_pred ccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 01235566777777777554456899999855321 2345678888887643
No 138
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.71 E-value=0.00012 Score=63.39 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=33.3
Q ss_pred ccccchHHHHHHHHH---Hhh------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 83 EIFDSRKEIFQVVME---SLK------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~---~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..++|.+...++|.+ +.. .+....+.++|++|+||||+|+.+++...
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 357787766655543 321 12345688999999999999999998764
No 139
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.70 E-value=0.00024 Score=70.55 Aligned_cols=104 Identities=19% Similarity=0.181 Sum_probs=61.9
Q ss_pred cccchHHHHHHHHHHhhc-------C--CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHH
Q 043850 84 IFDSRKEIFQVVMESLKD-------D--KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQ 154 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 154 (309)
.++|-++.++.|.+.+.. + ...++.++|++|+|||+||+.++.... ...+.++.++..... .
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~----~ 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH----T 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----c
Confidence 467888888888777642 1 234688999999999999999998763 234555554422211 1
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 155 FAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 155 i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
+...+|.++.. ... +....+.+.+..++..+|+||+++....
T Consensus 526 ~~~lig~~~gy-vg~-~~~~~l~~~~~~~p~~VvllDEieka~~ 567 (731)
T TIGR02639 526 VSRLIGAPPGY-VGF-EQGGLLTEAVRKHPHCVLLLDEIEKAHP 567 (731)
T ss_pred HHHHhcCCCCC-ccc-chhhHHHHHHHhCCCeEEEEechhhcCH
Confidence 22223333221 111 1122344555555467999999987654
No 140
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.70 E-value=0.00074 Score=67.21 Aligned_cols=47 Identities=32% Similarity=0.293 Sum_probs=37.6
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 83 EIFDSRKEIFQVVMESLKD-------------DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.++.|.++.+++|.+.+.- ...+-+.|+|++|+|||+||+.+++...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 4578999998888777621 2346789999999999999999998764
No 141
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0021 Score=57.20 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=41.6
Q ss_pred ccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 83 EIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.+++|.+...+.|...+..++ .+...++|+.|+||+++|..+++..-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc 52 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLS 52 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 467899999999999997776 488999999999999999999887643
No 142
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0006 Score=65.27 Aligned_cols=102 Identities=22% Similarity=0.227 Sum_probs=63.0
Q ss_pred ccccchHHHHHHHHHHhh------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHH
Q 043850 83 EIFDSRKEIFQVVMESLK------DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFA 156 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 156 (309)
.+.+|-++..++|++.|. .-.-++++++|++|+|||+|++.++.....+ | +-++++.-.+..++-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIR---- 393 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIR---- 393 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhc----
Confidence 456899999999999983 1234899999999999999999999987765 4 233444433333221
Q ss_pred HHhCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 157 FDLGMKLDL-NDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 157 ~~l~~~~~~-~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
|+...- ..-+...++.+.+. +.++=|++||.++....
T Consensus 394 ---GHRRTYIGamPGrIiQ~mkka--~~~NPv~LLDEIDKm~s 431 (782)
T COG0466 394 ---GHRRTYIGAMPGKIIQGMKKA--GVKNPVFLLDEIDKMGS 431 (782)
T ss_pred ---cccccccccCChHHHHHHHHh--CCcCCeEEeechhhccC
Confidence 111110 01122333333333 22357888999866543
No 143
>PHA02244 ATPase-like protein
Probab=97.68 E-value=0.00036 Score=62.61 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=30.2
Q ss_pred ccccchHHH----HHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 83 EIFDSRKEI----FQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 83 ~~~~gR~~~----~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..|+|.... ...+..++..+ .-|.|+|++|+|||+||+.++....
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 345554333 33444444332 3577899999999999999998754
No 144
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0012 Score=56.10 Aligned_cols=94 Identities=21% Similarity=0.200 Sum_probs=61.8
Q ss_pred cccccchHHHHHHHHHHhhc-------------CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCH
Q 043850 82 YEIFDSRKEIFQVVMESLKD-------------DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDY 148 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 148 (309)
+.++-|=.+++++|.+..+- +.++-|.++|++|.|||-+|+.|+|+.... | +.|-.
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac--f-----irvig---- 244 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC--F-----IRVIG---- 244 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce--E-----Eeehh----
Confidence 44566778888888776531 356789999999999999999999876544 3 22211
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 043850 149 RKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 149 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
.++.+.-- -....+...|.+.-+.++-|+|+||.++..
T Consensus 245 ----selvqkyv------gegarmvrelf~martkkaciiffdeidai 282 (435)
T KOG0729|consen 245 ----SELVQKYV------GEGARMVRELFEMARTKKACIIFFDEIDAI 282 (435)
T ss_pred ----HHHHHHHh------hhhHHHHHHHHHHhcccceEEEEeeccccc
Confidence 11221110 112345566666667777899999998654
No 145
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.68 E-value=0.00048 Score=54.58 Aligned_cols=40 Identities=35% Similarity=0.508 Sum_probs=31.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPD 147 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 147 (309)
++.|+|.+|+|||+++..++...... -..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcchH
Confidence 46899999999999999998887542 45678888765543
No 146
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.67 E-value=4.8e-05 Score=57.62 Aligned_cols=24 Identities=42% Similarity=0.533 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+|+|.|++|+||||+|+.+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998763
No 147
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0016 Score=60.34 Aligned_cols=73 Identities=23% Similarity=0.283 Sum_probs=46.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNK 182 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 182 (309)
+...+.+.|++|+|||+||..++.... |+.+--++..+-. | .++......+.+.+.+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~mi-------------G------~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMI-------------G------LSESAKCAHIKKIFED 593 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHcc-------------C------ccHHHHHHHHHHHHHH
Confidence 456788999999999999999987644 8776655432211 1 2233334444444422
Q ss_pred ---CCeEEEEEeCCCCccC
Q 043850 183 ---EMRVLIILDNIWTKLE 198 (309)
Q Consensus 183 ---~~r~LlVlDdv~~~~~ 198 (309)
.+=-.||+||++...+
T Consensus 594 AYkS~lsiivvDdiErLiD 612 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLD 612 (744)
T ss_pred hhcCcceEEEEcchhhhhc
Confidence 1246899999987766
No 148
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.65 E-value=0.004 Score=59.59 Aligned_cols=180 Identities=17% Similarity=0.155 Sum_probs=106.8
Q ss_pred cccccchHHHHHHHHHHhh----c-CCCcEEEEEeCCCCcHHHHHHHHHHHhhc---c---cCCCeEEEEEecCCCCHHH
Q 043850 82 YEIFDSRKEIFQVVMESLK----D-DKLKVIGVYGMGGVGKTTLVKQVAMKVME---D---KLFDKVVMAEVTQTPDYRK 150 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~----~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~---~~f~~~~wv~~~~~~~~~~ 150 (309)
+..+-+|+.+..+|-..+. + ...+.+-|.|-+|+|||..+..|.+.... + ..|++ +.|+.-.-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHH
Confidence 4456789999999988873 3 23458999999999999999999986652 1 23332 3444444557889
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh----cCCeEEEEEeCCCCccC-----------CCCCCCcEEEEeeCCcc
Q 043850 151 IEDQFAFDLGMKLDLNDSTLERTDGLRKRLN----KEMRVLIILDNIWTKLE-----------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 151 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~----~~~r~LlVlDdv~~~~~-----------~~~~~gs~iliTtR~~~ 215 (309)
+...|..++...... .......|..++. .++.++|++|+++.... .+..++++++|-+=...
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 999999998654332 2334445555553 23468999998855433 56677888776543331
Q ss_pred c--cccccCCCceEecC--CCCCCCCCcHHHHHHH-HHhCCC----chHHHHHHHHhcC
Q 043850 216 L--LCNDMNSQKDFWID--DSTRISAYQPTEHEIV-ERRGGL----PVAPSTIANALKS 265 (309)
Q Consensus 216 v--~~~~~~~~~~~~l~--~~~~~~~~~~~~~~i~-~~c~Gl----PLai~~~a~~l~~ 265 (309)
. ....+.....-++. ...-.+-..+..++|+ .+..|+ +-|+..+|+.++.
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAa 609 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAA 609 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHh
Confidence 1 11111111111111 1111222233334444 444554 5788888877763
No 149
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.65 E-value=0.00054 Score=59.43 Aligned_cols=57 Identities=25% Similarity=0.233 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHH
Q 043850 89 KEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIE 152 (309)
Q Consensus 89 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 152 (309)
.+.++++..++..+ ..|.|.|.+|+|||+||+.++.... . ..+.+++....+..+++
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg----~-~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD----R-PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC----C-CEEEEeCCccCCHHHHh
Confidence 34455556655443 4667999999999999999987432 1 23455665555544443
No 150
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00043 Score=59.66 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=51.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNK 182 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 182 (309)
+..-+.++|.+|+|||.||..+.+..- +. --.+.+++ ..+++.+|....... .....+.+.+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~-g~sv~f~~------~~el~~~Lk~~~~~~--------~~~~~l~~~l~~ 167 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KA-GISVLFIT------APDLLSKLKAAFDEG--------RLEEKLLRELKK 167 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc-CCeEEEEE------HHHHHHHHHHHHhcC--------chHHHHHHHhhc
Confidence 667899999999999999999999988 42 23455554 456777776665431 122334443433
Q ss_pred CCeEEEEEeCCCCc
Q 043850 183 EMRVLIILDNIWTK 196 (309)
Q Consensus 183 ~~r~LlVlDdv~~~ 196 (309)
-=||||||+-..
T Consensus 168 --~dlLIiDDlG~~ 179 (254)
T COG1484 168 --VDLLIIDDIGYE 179 (254)
T ss_pred --CCEEEEecccCc
Confidence 369999998553
No 151
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.63 E-value=0.0001 Score=65.93 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=41.3
Q ss_pred cccchHHHHHHHHHHhhc------CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 84 IFDSRKEIFQVVMESLKD------DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.++|-++.+++|++++.. ...+++.|+|++|+||||||..+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 789999999999999842 24688999999999999999999998765
No 152
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00043 Score=62.22 Aligned_cols=89 Identities=25% Similarity=0.250 Sum_probs=58.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHHhc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-NDSTLERTDGLRKRLNK 182 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~L~~ 182 (309)
-.+|.|-|-+|+|||||..+++.+...+. .+++|+-.+.. .+ .+--+..++.+.+. ..-.+...+.+.+.+..
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~--~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESL--QQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCH--HH-HHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 47899999999999999999999988763 77887755432 22 22234556654433 11122334445555555
Q ss_pred CCeEEEEEeCCCCccC
Q 043850 183 EMRVLIILDNIWTKLE 198 (309)
Q Consensus 183 ~~r~LlVlDdv~~~~~ 198 (309)
.++-|+|+|-+.+...
T Consensus 167 ~~p~lvVIDSIQT~~s 182 (456)
T COG1066 167 EKPDLVVIDSIQTLYS 182 (456)
T ss_pred cCCCEEEEeccceeec
Confidence 6689999999866543
No 153
>PRK06526 transposase; Provisional
Probab=97.62 E-value=0.00022 Score=61.38 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=53.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNK 182 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 182 (309)
+...+.|+|++|+|||+||..+.+..... .+ .+.|+ +..+++..+..... . .. ....+ ..+.+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~-g~-~v~f~------t~~~l~~~l~~~~~----~-~~---~~~~l-~~l~~ 159 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA-GH-RVLFA------TAAQWVARLAAAHH----A-GR---LQAEL-VKLGR 159 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC-CC-chhhh------hHHHHHHHHHHHHh----c-Cc---HHHHH-HHhcc
Confidence 34568999999999999999998876543 12 23333 33445555543321 1 11 11222 22322
Q ss_pred CCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCcc
Q 043850 183 EMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 183 ~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~ 215 (309)
.-|||+||+..... .....++ +|+||..+.
T Consensus 160 --~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~~ 202 (254)
T PRK06526 160 --YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKPF 202 (254)
T ss_pred --CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCCH
Confidence 46899999965421 1122344 888888763
No 154
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0018 Score=57.58 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcCCC-cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 90 EIFQVVMESLKDDKL-KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 90 ~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
...+.|...+..+.. ..+.++|+.|+||+++|..++...-.
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence 445667777766554 56899999999999999999887644
No 155
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.61 E-value=0.00019 Score=58.22 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=29.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEE
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAE 141 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 141 (309)
...+|.+.|+.|+||||+|+.++...... +...++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEe
Confidence 45699999999999999999999988754 55555553
No 156
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0015 Score=58.43 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.+.+.++|+.|+|||++|..++...--
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 567889999999999999999888754
No 157
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.61 E-value=0.00065 Score=60.70 Aligned_cols=94 Identities=18% Similarity=0.155 Sum_probs=55.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKE 183 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 183 (309)
...+.++|.+|+|||.||..+++....+ -..++|+++ .+++..+...-. ... . +.... .+.+..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~------~~l~~~l~~~~~-~~~--~---~~~~~-~~~l~~- 246 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTA------DELIEILREIRF-NND--K---ELEEV-YDLLIN- 246 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEH------HHHHHHHHHHHh-ccc--h---hHHHH-HHHhcc-
Confidence 3779999999999999999999988654 235666654 334444432211 100 1 11111 344433
Q ss_pred CeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCc
Q 043850 184 MRVLIILDNIWTKLE-------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 184 ~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~ 214 (309)
-=||||||+..... .....+..+||||...
T Consensus 247 -~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 247 -CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred -CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 35899999955432 1122234588887765
No 158
>PRK04296 thymidine kinase; Provisional
Probab=97.61 E-value=0.00017 Score=59.37 Aligned_cols=106 Identities=19% Similarity=0.123 Sum_probs=64.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHHhc
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL--NDSTLERTDGLRKRLNK 182 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~L~~ 182 (309)
.++.|+|..|.||||+|..++.+.... -..++.+.- .++.......++.+++..... .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~--~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKP--AIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEec--cccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 478899999999999999999887654 333343421 111122233455566543322 1233444455544 23
Q ss_pred CCeEEEEEeCCCCccC--------CCCCCCcEEEEeeCCccc
Q 043850 183 EMRVLIILDNIWTKLE--------KDDQERCTIVLISRSRDL 216 (309)
Q Consensus 183 ~~r~LlVlDdv~~~~~--------~~~~~gs~iliTtR~~~v 216 (309)
++.-+||+|.+..... .....|..|++|.+..+.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 3345899999965422 225678889999999654
No 159
>PRK06696 uridine kinase; Validated
Probab=97.60 E-value=0.00012 Score=61.88 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHhh---cCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 87 SRKEIFQVVMESLK---DDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 87 gR~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.|.+.+++|.+.+. .+++.+|+|.|.+|+||||||+.++.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47778888888874 356789999999999999999999988754
No 160
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.60 E-value=0.00035 Score=59.10 Aligned_cols=86 Identities=23% Similarity=0.231 Sum_probs=52.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHH----h-C-CCCCCCCCHHH---HHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFD----L-G-MKLDLNDSTLE---RTD 174 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~----l-~-~~~~~~~~~~~---~~~ 174 (309)
-.++.|+|.+|+|||+||.+++...... -..++|++.. .++...+ .+++.. + . .......+..+ ...
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF-KQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH-HHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 4789999999999999999998776543 4678899887 5554443 223222 1 0 00000122222 333
Q ss_pred HHHHHHhcCCeEEEEEeCCC
Q 043850 175 GLRKRLNKEMRVLIILDNIW 194 (309)
Q Consensus 175 ~l~~~L~~~~r~LlVlDdv~ 194 (309)
.+...+.. +.-++|+|.+.
T Consensus 99 ~~~~~~~~-~~~lvVIDsi~ 117 (225)
T PRK09361 99 KAEKLAKE-NVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHh-cccEEEEeCcH
Confidence 44444443 36799999984
No 161
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.59 E-value=0.00085 Score=58.79 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=85.1
Q ss_pred CcccccchHHHHHHHHHHhhc----CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHH-HHHHHH
Q 043850 81 DYEIFDSRKEIFQVVMESLKD----DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYR-KIEDQF 155 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i 155 (309)
+...++|-.++-..+-.++.. ++...+.|+|+.|+|||+|......+.+. .=+..+-|.+......+ -.++.|
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~--~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQE--NGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHh--cCCeEEEEEECccchhhHHHHHHH
Confidence 345678988888888888743 45678889999999999999888777221 12355556665544332 235555
Q ss_pred HHHhCCC----CCCCCCHHHHHHHHHHHHhc-----CCeEEEEEeCCCCccC---------------CCCCCCcEEEEee
Q 043850 156 AFDLGMK----LDLNDSTLERTDGLRKRLNK-----EMRVLIILDNIWTKLE---------------KDDQERCTIVLIS 211 (309)
Q Consensus 156 ~~~l~~~----~~~~~~~~~~~~~l~~~L~~-----~~r~LlVlDdv~~~~~---------------~~~~~gs~iliTt 211 (309)
.+++... .....+..+....+...|.. +-++++|+|.++-... ....+-|-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 5554322 11123344556666666643 2258888988866544 3456778788999
Q ss_pred CCcc
Q 043850 212 RSRD 215 (309)
Q Consensus 212 R~~~ 215 (309)
|-..
T Consensus 180 rld~ 183 (408)
T KOG2228|consen 180 RLDI 183 (408)
T ss_pred cccH
Confidence 9873
No 162
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.59 E-value=0.001 Score=56.49 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=26.4
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.++.+|+|.|.+|+|||||++.+.......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 457899999999999999999999887754
No 163
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.59 E-value=0.00037 Score=70.35 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=63.6
Q ss_pred ccccchHHHHHHHHHHhhc-------C--CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHH
Q 043850 83 EIFDSRKEIFQVVMESLKD-------D--KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIED 153 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 153 (309)
..++|.+..++.+...+.. . ...++.++|++|+|||++|+.++...... -...+.++++.......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch---
Confidence 3578999999998888742 1 23568899999999999999999876432 22344455544322111
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 154 QFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 154 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
+..-+|.++.. ....+ ...+.+.+...+..+|+||+++....
T Consensus 640 -~~~l~g~~~g~-~g~~~-~g~l~~~v~~~p~~vlllDeieka~~ 681 (852)
T TIGR03346 640 -VARLIGAPPGY-VGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHP 681 (852)
T ss_pred -HHHhcCCCCCc-cCccc-ccHHHHHHHcCCCcEEEEeccccCCH
Confidence 11223333221 11110 12344444444456999999987654
No 164
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00078 Score=63.34 Aligned_cols=94 Identities=17% Similarity=0.284 Sum_probs=59.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNK 182 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 182 (309)
.+.=|.++|++|+|||-||++|+|..... |+++... +++..- .| . .+.....+.++-+.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkY---VG------E-SErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKY---VG------E-SERAVRQVFQRARA 602 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHH---hh------h-HHHHHHHHHHHhhc
Confidence 46678999999999999999999987765 4554432 111111 11 1 12233344444444
Q ss_pred CCeEEEEEeCCCCccC-----------------------CCCCCCcEEEEeeCCcccc
Q 043850 183 EMRVLIILDNIWTKLE-----------------------KDDQERCTIVLISRSRDLL 217 (309)
Q Consensus 183 ~~r~LlVlDdv~~~~~-----------------------~~~~~gs~iliTtR~~~v~ 217 (309)
.-+|+|+||.++.... .....|.-||-.|-.+++.
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 4589999999976543 3344666677666666554
No 165
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.57 E-value=0.00043 Score=61.43 Aligned_cols=92 Identities=22% Similarity=0.231 Sum_probs=59.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcc----cCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------CCCHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMED----KLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL---------NDSTL 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 170 (309)
-+++-|+|.+|+|||+|+.+++-..... ..=..++|++....++.+.+. ++++.++.+... ..+.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHH
Confidence 4788899999999999999887543321 112478999998888887765 456777654321 12333
Q ss_pred HHH---HHHHHHHhcCCeEEEEEeCCCCc
Q 043850 171 ERT---DGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 171 ~~~---~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
+.. ..+...+...+--|||+|.+...
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSisal 203 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIMAL 203 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence 333 33444454444568999998543
No 166
>PRK09183 transposase/IS protein; Provisional
Probab=97.56 E-value=0.00055 Score=59.24 Aligned_cols=92 Identities=21% Similarity=0.163 Sum_probs=51.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKE 183 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 183 (309)
...+.|+|++|+|||+||..+++..... -..+.+++ ..+++..+...... . .....+.+.+ .
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~--G~~v~~~~------~~~l~~~l~~a~~~-----~---~~~~~~~~~~-~- 163 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTT------AADLLLQLSTAQRQ-----G---RYKTTLQRGV-M- 163 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEe------HHHHHHHHHHHHHC-----C---cHHHHHHHHh-c-
Confidence 3568899999999999999998775433 22334443 23344343322211 0 1112222222 2
Q ss_pred CeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCc
Q 043850 184 MRVLIILDNIWTKLE-------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 184 ~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~ 214 (309)
..-++|+||+..... .....++ +|+||...
T Consensus 164 ~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 164 APRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 246999999965322 1112344 78888766
No 167
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.55 E-value=0.00051 Score=69.20 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=61.4
Q ss_pred cccchHHHHHHHHHHhhc-------C--CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHH
Q 043850 84 IFDSRKEIFQVVMESLKD-------D--KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQ 154 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 154 (309)
.++|.+..++.+...+.. + ...++.++|+.|+|||+||+.+++..... -...+.++++..... . .
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~~-~---~ 642 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFMEK-H---S 642 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhhh-h---h
Confidence 478988888888877742 1 12478899999999999999998765432 123344554432111 1 1
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 155 FAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 155 i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
+..-+|.++.. ..... ...+.+.+...+.-+|+||++.....
T Consensus 643 ~~~LiG~~pgy-~g~~~-~g~l~~~v~~~p~~vLllDEieka~~ 684 (857)
T PRK10865 643 VSRLVGAPPGY-VGYEE-GGYLTEAVRRRPYSVILLDEVEKAHP 684 (857)
T ss_pred HHHHhCCCCcc-cccch-hHHHHHHHHhCCCCeEEEeehhhCCH
Confidence 12223433322 11111 12244444443347999999976544
No 168
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.55 E-value=0.00065 Score=60.13 Aligned_cols=86 Identities=19% Similarity=0.239 Sum_probs=58.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----NDSTLERTDGLRK 178 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 178 (309)
-+++-|+|+.|+||||||..+....... -..++|++....++. ..++.+|.+.+. +...++....+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4789999999999999999998876544 457899998776654 345666765543 4556666677777
Q ss_pred HHhcCCeEEEEEeCCCCc
Q 043850 179 RLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 179 ~L~~~~r~LlVlDdv~~~ 196 (309)
.++.+..-++|+|-|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 776665569999998554
No 169
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.54 E-value=0.0024 Score=63.68 Aligned_cols=48 Identities=27% Similarity=0.256 Sum_probs=35.5
Q ss_pred ccccchHHHHHHHHHHhh-------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 83 EIFDSRKEIFQVVMESLK-------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.++.|.+...+.|.+.+. -..++-+.++|++|+|||+||+.+++....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~ 513 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA 513 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC
Confidence 446777777776666542 123456899999999999999999987653
No 170
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.53 E-value=0.00045 Score=68.63 Aligned_cols=169 Identities=13% Similarity=0.159 Sum_probs=88.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh-hcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV-MEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL---NDSTLERTDGLRK 178 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 178 (309)
+..++.|+|+.|.|||||.+.+.... ..+.. ++|.+..... ...+..+...++..... ......-...+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 34789999999999999999997662 11110 1111111000 00011111111110000 0001111112222
Q ss_pred HHhc-CCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCccccccccCC---------------CceEec
Q 043850 179 RLNK-EMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRDLLCNDMNS---------------QKDFWI 229 (309)
Q Consensus 179 ~L~~-~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~v~~~~~~~---------------~~~~~l 229 (309)
.+.. ..+-|++||++-...+ .....|+.+|+||....+....... ...|++
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~Ykl 475 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPTYKL 475 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceEEEE
Confidence 3321 2379999999977665 1123578899999998653211111 112333
Q ss_pred CCCCCCCCCcHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHhcC
Q 043850 230 DDSTRISAYQPTEHEIVERRGGLPVAPSTIANALKSKSVAIWKDALNQLKS 280 (309)
Q Consensus 230 ~~~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l~~~~~~~w~~~l~~l~~ 280 (309)
....+ -...|-+|++++ |+|-.+..-|..+.......+.+++.+|..
T Consensus 476 ~~G~~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 476 LKGIP---GESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred CCCCC---CCcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 32222 245677888877 789888888887765555566777666544
No 171
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.53 E-value=0.00026 Score=71.12 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=62.1
Q ss_pred ccccchHHHHHHHHHHhhc-------C--CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHH
Q 043850 83 EIFDSRKEIFQVVMESLKD-------D--KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIED 153 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 153 (309)
..++|-++.++.+.+.+.. + ...++.++|++|+|||.||+.++...... ....+-++++.... -.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~----~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQE----AH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhh----hh
Confidence 4578988888888887731 1 23578999999999999999998876432 22223333332111 11
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 154 QFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 154 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
.+.+-+|.++.. .... ....+.+.++.++..+|+||+++....
T Consensus 640 ~~~~l~g~~~gy-vg~~-~~g~L~~~v~~~p~svvllDEieka~~ 682 (852)
T TIGR03345 640 TVSRLKGSPPGY-VGYG-EGGVLTEAVRRKPYSVVLLDEVEKAHP 682 (852)
T ss_pred hhccccCCCCCc-cccc-ccchHHHHHHhCCCcEEEEechhhcCH
Confidence 112223433322 1100 111244555555568999999976544
No 172
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.53 E-value=0.00091 Score=59.99 Aligned_cols=91 Identities=21% Similarity=0.187 Sum_probs=59.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcc---c-CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------CCCHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMED---K-LFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL---------NDSTL 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 170 (309)
-.++-|+|.+|+|||+|+.+++-..... . .-..++|++....|+.+++.. +++.++.+... ..+.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHH
Confidence 4788899999999999999987544321 1 124789999999888877644 56667655321 12334
Q ss_pred HHH---HHHHHHHhcCCeEEEEEeCCCC
Q 043850 171 ERT---DGLRKRLNKEMRVLIILDNIWT 195 (309)
Q Consensus 171 ~~~---~~l~~~L~~~~r~LlVlDdv~~ 195 (309)
+.. ..+...+...+--|||+|.+-.
T Consensus 205 ~~~~~l~~l~~~i~~~~~~LvVIDSita 232 (344)
T PLN03187 205 HQYNLLLGLAAKMAEEPFRLLIVDSVIA 232 (344)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 333 3333344444456899999854
No 173
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.52 E-value=0.00083 Score=58.89 Aligned_cols=88 Identities=25% Similarity=0.310 Sum_probs=51.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLN 181 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 181 (309)
...+++|+|++|+||||++..++.....+..-..+..++..... ...+.+....+.++.+.....+..++...+. .+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~-~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD-RLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH-Hcc
Confidence 35699999999999999999998877543111245566654321 2233444445556665544344444443333 333
Q ss_pred cCCeEEEEEeCC
Q 043850 182 KEMRVLIILDNI 193 (309)
Q Consensus 182 ~~~r~LlVlDdv 193 (309)
+ .=+|++|..
T Consensus 272 ~--~d~vliDt~ 281 (282)
T TIGR03499 272 D--KDLILIDTA 281 (282)
T ss_pred C--CCEEEEeCC
Confidence 3 357777753
No 174
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.52 E-value=0.0015 Score=61.41 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=35.1
Q ss_pred cccccchHHHHHHHHHHh---h----c---CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 82 YEIFDSRKEIFQVVMESL---K----D---DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L---~----~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..++.|.+...+.|.+.. . . ..++-|.++|++|+|||.+|+.+++....
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 346778776665554421 1 1 23567999999999999999999987654
No 175
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.51 E-value=0.00051 Score=57.79 Aligned_cols=88 Identities=20% Similarity=0.145 Sum_probs=51.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHh----CCCC--CCCCCHHHH---HH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDL----GMKL--DLNDSTLER---TD 174 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l----~~~~--~~~~~~~~~---~~ 174 (309)
-.++.|.|.+|+|||+||.+++...... -..++|++....+. +-+.+++... .... ....+..+. ..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ 94 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence 4789999999999999999998776533 34677887655443 3333333321 0000 001222222 23
Q ss_pred HHHHHHhcCCeEEEEEeCCCCc
Q 043850 175 GLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 175 ~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
.+...+..+ .-++|+|.+...
T Consensus 95 ~~~~~~~~~-~~lvvIDsi~~l 115 (218)
T cd01394 95 ETETFADEK-VDLVVVDSATAL 115 (218)
T ss_pred HHHHHHhcC-CcEEEEechHHh
Confidence 444444443 578999998543
No 176
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00016 Score=70.57 Aligned_cols=103 Identities=20% Similarity=0.313 Sum_probs=66.5
Q ss_pred cccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCC-----eEEEEEecCCCCHHHHHHHHH
Q 043850 82 YEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFD-----KVVMAEVTQTPDYRKIEDQFA 156 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-----~~~wv~~~~~~~~~~~~~~i~ 156 (309)
..+++||++|+.++++.|....-.--.++|.+|+|||+++--++.+.-...-.. .++-.+++ . +.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g------~----Lv 238 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG------S----LV 238 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH------H----Hh
Confidence 456899999999999999765444556889999999999999888765432111 11111111 0 00
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 157 FDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
.|... --+.++....+.+.+...++.+|++|.+.+...
T Consensus 239 --AGaky--RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVG 276 (786)
T COG0542 239 --AGAKY--RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVG 276 (786)
T ss_pred --ccccc--cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 01111 134566677777777654589999999866543
No 177
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00041 Score=67.78 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=67.8
Q ss_pred ccccchHHHHHHHHHHhhc---------CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHH
Q 043850 83 EIFDSRKEIFQVVMESLKD---------DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIED 153 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 153 (309)
..++|-++.++.+.+.+.. .+..+....|+.|+|||.||+.++...-... +..+-++.|+... -.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~E----kH 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYME----KH 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHH----HH
Confidence 4578999999999888731 2346778899999999999999998764321 3344444443211 12
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 154 QFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 154 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
.+.+-+|.++.. -.-++ ...|-+..++++-.+|.||+++..+.
T Consensus 565 sVSrLIGaPPGY-VGyee-GG~LTEaVRr~PySViLlDEIEKAHp 607 (786)
T COG0542 565 SVSRLIGAPPGY-VGYEE-GGQLTEAVRRKPYSVILLDEIEKAHP 607 (786)
T ss_pred HHHHHhCCCCCC-ceecc-ccchhHhhhcCCCeEEEechhhhcCH
Confidence 333445666543 11111 33455666665334888999988665
No 178
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.49 E-value=0.00046 Score=59.55 Aligned_cols=91 Identities=27% Similarity=0.277 Sum_probs=58.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhccc----CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------CCCHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDK----LFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL---------NDSTL 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 170 (309)
-.++=|+|.+|+|||.|+.+++-...... .=..++|++-...++...+. +|++..+.+... ..+.+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 46888999999999999999876654321 12369999988888877664 566665432211 12333
Q ss_pred HH---HHHHHHHHhcCCeEEEEEeCCCC
Q 043850 171 ER---TDGLRKRLNKEMRVLIILDNIWT 195 (309)
Q Consensus 171 ~~---~~~l~~~L~~~~r~LlVlDdv~~ 195 (309)
++ ...+...+.+.+--|||+|.+-.
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHHhhccccceEEEEecchHH
Confidence 33 33344445444467999999844
No 179
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.48 E-value=0.00027 Score=69.80 Aligned_cols=104 Identities=14% Similarity=0.175 Sum_probs=61.4
Q ss_pred cccchHHHHHHHHHHhhc---------CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHH
Q 043850 84 IFDSRKEIFQVVMESLKD---------DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQ 154 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 154 (309)
.++|-++.++.|.+.+.. .....+.++|++|+|||+||+.++..... ..+.+++++..... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----c
Confidence 467888888888887741 12357899999999999999999887632 22344444322211 1
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 155 FAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 155 i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
+..-+|.++.. .. .+....+.+.+..++..+|+||+++....
T Consensus 530 ~~~LiG~~~gy-vg-~~~~g~L~~~v~~~p~sVlllDEieka~~ 571 (758)
T PRK11034 530 VSRLIGAPPGY-VG-FDQGGLLTDAVIKHPHAVLLLDEIEKAHP 571 (758)
T ss_pred HHHHcCCCCCc-cc-ccccchHHHHHHhCCCcEEEeccHhhhhH
Confidence 22223433221 00 01112344445444467999999977654
No 180
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.48 E-value=0.0005 Score=69.19 Aligned_cols=108 Identities=16% Similarity=0.170 Sum_probs=62.8
Q ss_pred ccccchHHHHHHHHHHhhc-------C--CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHH
Q 043850 83 EIFDSRKEIFQVVMESLKD-------D--KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIED 153 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 153 (309)
..++|-++.++.+.+.+.. . ....+.++|+.|+|||+||+.+++..-.. -...+-++.+.......
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhcccccc---
Confidence 4578999988888887731 1 13457789999999999999999876432 12334444443222111
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 154 QFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 154 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
+..-+|.++.. .... ....+.+.+..++..+++||+++....
T Consensus 584 -~~~l~g~~~gy-vg~~-~~~~l~~~~~~~p~~VvllDeieka~~ 625 (821)
T CHL00095 584 -VSKLIGSPPGY-VGYN-EGGQLTEAVRKKPYTVVLFDEIEKAHP 625 (821)
T ss_pred -HHHhcCCCCcc-cCcC-ccchHHHHHHhCCCeEEEECChhhCCH
Confidence 11123332211 1100 112345555555457999999987654
No 181
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0018 Score=55.97 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=86.4
Q ss_pred ccchHHHHHHHHHHhh------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHH
Q 043850 85 FDSRKEIFQVVMESLK------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIE 152 (309)
Q Consensus 85 ~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 152 (309)
+-|-+...+.|.+..- ....+-|.++|++|.||+.||+.|+...... |.++|.. ++.
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-------FFSvSSS----DLv 203 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-------FFSVSSS----DLV 203 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-------eEEeehH----HHH
Confidence 4566666666666541 1235779999999999999999999766533 3444432 111
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC------------------------CCCCCCcEEE
Q 043850 153 DQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE------------------------KDDQERCTIV 208 (309)
Q Consensus 153 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~------------------------~~~~~gs~il 208 (309)
. ..+| ..+.+...|.+.-+..++-+|++|.++.... .....|.-||
T Consensus 204 S---KWmG-------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 204 S---KWMG-------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred H---HHhc-------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 1 1222 2245666677766666789999999975432 2334455555
Q ss_pred EeeCCcccccccc---CCCce-------------EecC-CCCCCCCCcHHHHHHHHHhCCCc
Q 043850 209 LISRSRDLLCNDM---NSQKD-------------FWID-DSTRISAYQPTEHEIVERRGGLP 253 (309)
Q Consensus 209 iTtR~~~v~~~~~---~~~~~-------------~~l~-~~~~~~~~~~~~~~i~~~c~GlP 253 (309)
-.|..+-+..... ...++ |++. +..+....++..+++.++..|..
T Consensus 274 gATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 274 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred ecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCC
Confidence 5666554332111 01111 2222 44444455566788888888754
No 182
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.46 E-value=0.00018 Score=69.38 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=43.1
Q ss_pred cCCCcccccchHHHHHHHHHHhhcC-----CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 78 DVKDYEIFDSRKEIFQVVMESLKDD-----KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 78 ~~~~~~~~~gR~~~~~~l~~~L~~~-----~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.|....+++|.++.++++..++... ...++.|+|++|+||||+++.++....
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3556778999999999999998542 335799999999999999999998654
No 183
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.013 Score=52.08 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 90 EIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 90 ~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...++|.+.+..++ ...+.+.|+.|+||+++|..++...-
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll 50 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL 50 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc
Confidence 34556666665554 46789999999999999999987664
No 184
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.45 E-value=0.0005 Score=64.08 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=56.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKE 183 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 183 (309)
...+.|+|..|+|||+|++.+++..... ...+++++. ..+...+...+... ....+++.+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~---------~~~~f~~~~~~- 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG---------EMQRFRQFYRN- 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc---------hHHHHHHHccc-
Confidence 3568999999999999999999987643 234556542 34444555554321 11233444433
Q ss_pred CeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCc
Q 043850 184 MRVLIILDNIWTKLE-------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 184 ~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~ 214 (309)
.-+|++||+..... .....|..||+||...
T Consensus 203 -~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~ 245 (445)
T PRK12422 203 -VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCA 245 (445)
T ss_pred -CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCC
Confidence 46889999865432 1112356788888654
No 185
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.45 E-value=0.00053 Score=60.66 Aligned_cols=127 Identities=19% Similarity=0.230 Sum_probs=73.7
Q ss_pred ccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHH-hhcccCCCeEE----EEEecCCC---------CHHH
Q 043850 85 FDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMK-VMEDKLFDKVV----MAEVTQTP---------DYRK 150 (309)
Q Consensus 85 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~f~~~~----wv~~~~~~---------~~~~ 150 (309)
+-+|..+..--+++|.++....|.+.|.+|+|||.||....-. .-.++.|..++ -+.++++- .+.-
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Confidence 4567777777788888999999999999999999999776433 22333454332 12333321 1122
Q ss_pred HHHHHHHHh---CCCCCCCCCHHHHHHHH----------HHHHhcC--CeEEEEEeCCCCccC-------CCCCCCcEEE
Q 043850 151 IEDQFAFDL---GMKLDLNDSTLERTDGL----------RKRLNKE--MRVLIILDNIWTKLE-------KDDQERCTIV 208 (309)
Q Consensus 151 ~~~~i~~~l---~~~~~~~~~~~~~~~~l----------~~~L~~~--~r~LlVlDdv~~~~~-------~~~~~gs~il 208 (309)
.+..|...+ ...... . ......+ ..++++. ..-++|+|...+... ...+.||||+
T Consensus 306 Wmq~i~DnLE~L~~~~~~--~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~G~GsKIV 382 (436)
T COG1875 306 WMQAIFDNLEVLFSPNEP--G-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRAGEGSKIV 382 (436)
T ss_pred hHHHHHhHHHHHhccccc--c-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhccCCCEEE
Confidence 233332222 111111 1 1122221 1122221 246899999988766 6788999999
Q ss_pred EeeCCc
Q 043850 209 LISRSR 214 (309)
Q Consensus 209 iTtR~~ 214 (309)
.|---.
T Consensus 383 l~gd~a 388 (436)
T COG1875 383 LTGDPA 388 (436)
T ss_pred EcCCHH
Confidence 875433
No 186
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.44 E-value=0.0011 Score=54.03 Aligned_cols=75 Identities=25% Similarity=0.276 Sum_probs=44.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNK 182 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 182 (309)
...-+.|+|.+|+|||.||..+++..-.. =..+.|++. .+++..+-. .... .... .+.+.+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~~------~~L~~~l~~----~~~~-~~~~----~~~~~l~~ 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFITA------SDLLDELKQ----SRSD-GSYE----ELLKRLKR 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEH------HHHHHHHHC----CHCC-TTHC----HHHHHHHT
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEeec------Cceeccccc----cccc-cchh----hhcCcccc
Confidence 34679999999999999999999876653 234566653 444444432 2111 1222 23344443
Q ss_pred CCeEEEEEeCCCCc
Q 043850 183 EMRVLIILDNIWTK 196 (309)
Q Consensus 183 ~~r~LlVlDdv~~~ 196 (309)
.=||||||+-..
T Consensus 109 --~dlLilDDlG~~ 120 (178)
T PF01695_consen 109 --VDLLILDDLGYE 120 (178)
T ss_dssp --SSCEEEETCTSS
T ss_pred --ccEeccccccee
Confidence 368889999544
No 187
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.44 E-value=0.0003 Score=70.00 Aligned_cols=159 Identities=16% Similarity=0.238 Sum_probs=88.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhc--cc------------CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCC
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVME--DK------------LFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDS 168 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 168 (309)
+.+++.|+|+.+.||||+.+.+.-..-. .. .|+ .++..++...++..-+..+.
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS------------ 392 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFS------------ 392 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHH------------
Confidence 3568899999999999999998644211 00 111 22333333322222222111
Q ss_pred HHHHHHHHHHHHhc-CCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCccccccccCCC----------
Q 043850 169 TLERTDGLRKRLNK-EMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRDLLCNDMNSQ---------- 224 (309)
Q Consensus 169 ~~~~~~~l~~~L~~-~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~v~~~~~~~~---------- 224 (309)
.....+...+.. ..+-|++||.+-...+ .....|+.+|+||....+........
T Consensus 393 --~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d 470 (782)
T PRK00409 393 --GHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEFD 470 (782)
T ss_pred --HHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEEe
Confidence 111122222211 1368999999976655 12235788999999986543211111
Q ss_pred -----ceEecCCCCCCCCCcHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHhcC
Q 043850 225 -----KDFWIDDSTRISAYQPTEHEIVERRGGLPVAPSTIANALKSKSVAIWKDALNQLKS 280 (309)
Q Consensus 225 -----~~~~l~~~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l~~~~~~~w~~~l~~l~~ 280 (309)
..|++.... .-...|-+|++++ |+|-.+..-|..+..........++..|..
T Consensus 471 ~~~l~~~Ykl~~G~---~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 471 EETLRPTYRLLIGI---PGKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred cCcCcEEEEEeeCC---CCCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 112222111 1245678888887 788888888887765555566666666544
No 188
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.44 E-value=0.00036 Score=66.77 Aligned_cols=75 Identities=20% Similarity=0.211 Sum_probs=54.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH-h
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRL-N 181 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~ 181 (309)
..++..++|++|+||||||.-++++..- .++=++.|+..+...+-..|...+..... | .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGY-----sVvEINASDeRt~~~v~~kI~~avq~~s~---------------l~a 384 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGY-----SVVEINASDERTAPMVKEKIENAVQNHSV---------------LDA 384 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCc-----eEEEecccccccHHHHHHHHHHHHhhccc---------------ccc
Confidence 3578999999999999999999987542 36678888888877776666665533221 1 1
Q ss_pred cCCeEEEEEeCCCCcc
Q 043850 182 KEMRVLIILDNIWTKL 197 (309)
Q Consensus 182 ~~~r~LlVlDdv~~~~ 197 (309)
+.++.-||+|.++-..
T Consensus 385 dsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAP 400 (877)
T ss_pred CCCcceEEEecccCCc
Confidence 2357788888887655
No 189
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00053 Score=58.52 Aligned_cols=112 Identities=17% Similarity=0.216 Sum_probs=71.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC-----CCCHHHHHHHHHHHhCCCCCC-------CCCHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ-----TPDYRKIEDQFAFDLGMKLDL-------NDSTL 170 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 170 (309)
+-.+++|+|.+|+|||||++.+..-.... .+.++....+ .....+...+++...|.+... -...+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 45789999999999999999998876643 2333333221 122344566677776644321 11222
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCccccc
Q 043850 171 ERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRDLLC 218 (309)
Q Consensus 171 ~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~v~~ 218 (309)
...-.+.+.|.-+ +-++|.|..-+..+ .....|...++.|.+-.++.
T Consensus 115 rQRi~IARALal~-P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 115 RQRIGIARALALN-PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVR 174 (268)
T ss_pred hhhHHHHHHHhhC-CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhh
Confidence 2233445555664 79999999877766 34455677888888887764
No 190
>CHL00181 cbbX CbbX; Provisional
Probab=97.42 E-value=0.0012 Score=58.04 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..+.++|++|+|||++|+.+++....
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34889999999999999999887643
No 191
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.40 E-value=0.0027 Score=62.10 Aligned_cols=49 Identities=27% Similarity=0.243 Sum_probs=33.0
Q ss_pred cccccchHHHHHHHHH---Hhhc---------CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 82 YEIFDSRKEIFQVVME---SLKD---------DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~---~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..++.|-+...+++.+ ++.. .-++-|.|+|++|+|||++|+.++.....
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456676655555444 3321 11345999999999999999999887654
No 192
>PRK04328 hypothetical protein; Provisional
Probab=97.40 E-value=0.00097 Score=57.37 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=66.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC------------------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD------------------ 164 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------ 164 (309)
.-+++.|.|.+|+|||+|+.+++...-.+ -..++|++..+.+ .++.+ .+++++.+..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~~--~~i~~-~~~~~g~d~~~~~~~~~l~iid~~~~~~ 96 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEHP--VQVRR-NMRQFGWDVRKYEEEGKFAIVDAFTGGI 96 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCCH--HHHHH-HHHHcCCCHHHHhhcCCEEEEecccccc
Confidence 35789999999999999999987664333 4567888876643 33332 2333332100
Q ss_pred ------------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC---------------CCCCCCcEEEEeeCCc
Q 043850 165 ------------LNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE---------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 165 ------------~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~---------------~~~~~gs~iliTtR~~ 214 (309)
...+..+....+.+.+...+.-++|+|.+..... .....|+.+|+|+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~lk~~g~t~llt~e~~ 173 (249)
T PRK04328 97 GSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLTKPAMARSIVMQLKRVLSGLGCTAIFVSQVS 173 (249)
T ss_pred ccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 1134455666677766554456899999853311 2345678888886543
No 193
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.39 E-value=0.0014 Score=58.30 Aligned_cols=91 Identities=22% Similarity=0.203 Sum_probs=57.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccC----CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------CCCHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKL----FDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL---------NDSTL 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 170 (309)
..++-|+|.+|+|||+|+.+++........ -..++|++....++...+. +++..++..... ..+..
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~~ 173 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNSN 173 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCHH
Confidence 578899999999999999999877542110 1279999998888877654 445555443210 01111
Q ss_pred ---HHHHHHHHHHhcC--CeEEEEEeCCCC
Q 043850 171 ---ERTDGLRKRLNKE--MRVLIILDNIWT 195 (309)
Q Consensus 171 ---~~~~~l~~~L~~~--~r~LlVlDdv~~ 195 (309)
.....+.+.+... +.-+||+|.+..
T Consensus 174 ~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 174 HQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 1334455555442 245899998854
No 194
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.39 E-value=0.0014 Score=58.92 Aligned_cols=91 Identities=18% Similarity=0.134 Sum_probs=59.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcc---c-CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------CCCHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMED---K-LFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL---------NDSTL 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 170 (309)
-.++-|+|.+|+|||+|+..++-..... . .-..++|++....++.+++ .+|++.++..... ..+.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~e 201 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNTD 201 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCHH
Confidence 4788899999999999999887643321 0 1126999999998887765 4566776654321 12333
Q ss_pred HHHHHH---HHHHhcCCeEEEEEeCCCC
Q 043850 171 ERTDGL---RKRLNKEMRVLIILDNIWT 195 (309)
Q Consensus 171 ~~~~~l---~~~L~~~~r~LlVlDdv~~ 195 (309)
.....+ ...+...+.-|||+|.+..
T Consensus 202 ~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 202 HQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 333333 2334444467999999854
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0035 Score=56.23 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=36.9
Q ss_pred cccc-hHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 84 IFDS-RKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 84 ~~~g-R~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.++| -+..++.|...+..++ ++...++|+.|+|||++|..+++..-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c 54 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC 54 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3456 6677788888876665 456799999999999999999887643
No 196
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.0013 Score=59.46 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=55.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ-TPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNK 182 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 182 (309)
..++.++|+.|+||||++.+++...........+..++... .....+-+....+.++.+.....+..+....+ ..+.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHhcC
Confidence 57999999999999999999998765431123556665433 23445566666777776654323333333333 33333
Q ss_pred CCeEEEEEeCCCCc
Q 043850 183 EMRVLIILDNIWTK 196 (309)
Q Consensus 183 ~~r~LlVlDdv~~~ 196 (309)
+-++++|..-..
T Consensus 216 --~DlVLIDTaG~~ 227 (374)
T PRK14722 216 --KHMVLIDTIGMS 227 (374)
T ss_pred --CCEEEEcCCCCC
Confidence 356668887433
No 197
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.38 E-value=0.013 Score=53.47 Aligned_cols=51 Identities=29% Similarity=0.376 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHH-HHHHHHhhcccCCCeEEEEEecC
Q 043850 88 RKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLV-KQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 88 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
|.+.+++|..||....-..|.|.|+-|+||+.|+ .++.++. ..++.+++.+
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~ 52 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQ 52 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChH
Confidence 6678899999998888889999999999999999 6666542 3366676653
No 198
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.38 E-value=0.0018 Score=56.09 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=59.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCCC------CCCCCHH------
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGMKL------DLNDSTL------ 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~------ 170 (309)
-+-++|.|.+|+|||+|++.+++....+ +-+.++++-+++.. .+.++..++...-..+. ..+....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4678999999999999999999998765 22466777777765 45666666654321110 0011111
Q ss_pred HHHHHHHHHHh-c-CCeEEEEEeCCCCccC
Q 043850 171 ERTDGLRKRLN-K-EMRVLIILDNIWTKLE 198 (309)
Q Consensus 171 ~~~~~l~~~L~-~-~~r~LlVlDdv~~~~~ 198 (309)
...-.+.+++. . ++.+||++||+....+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 12233555552 1 3589999999855433
No 199
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.37 E-value=0.0013 Score=58.65 Aligned_cols=92 Identities=25% Similarity=0.263 Sum_probs=58.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccC----CCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------CCCH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKL----FDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL---------NDST 169 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 169 (309)
...++-|+|.+|+|||+|+.+++........ =..++|++....++...+. ++++.++..... ..+.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCCH
Confidence 3578899999999999999999876532211 1378999998888776654 444555543211 0111
Q ss_pred H---HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 043850 170 L---ERTDGLRKRLNK-EMRVLIILDNIWT 195 (309)
Q Consensus 170 ~---~~~~~l~~~L~~-~~r~LlVlDdv~~ 195 (309)
. .....+...+.. .+--|||+|.+..
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 1 234445555544 3356999999854
No 200
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.37 E-value=0.0012 Score=61.09 Aligned_cols=87 Identities=23% Similarity=0.263 Sum_probs=50.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC-CCCHHHHHHHHHHHhCCCCCCC---CCHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ-TPDYRKIEDQFAFDLGMKLDLN---DSTLERTDGLRK 178 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 178 (309)
.+.+|.++|.+|+||||++..++...... .+ .+..+++.. .+...+-+..+...++.+.... .+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 46799999999999999999999887654 22 344444432 1223445566666666543221 222232333333
Q ss_pred HHhcCCeEEEEEeCC
Q 043850 179 RLNKEMRVLIILDNI 193 (309)
Q Consensus 179 ~L~~~~r~LlVlDdv 193 (309)
.+.. .-+||+|..
T Consensus 172 ~~~~--~DvVIIDTA 184 (437)
T PRK00771 172 KFKK--ADVIIVDTA 184 (437)
T ss_pred Hhhc--CCEEEEECC
Confidence 3333 245666666
No 201
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.37 E-value=0.00092 Score=59.50 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=58.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc---c-CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------CCCH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED---K-LFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL---------NDST 169 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 169 (309)
.-.++.|+|.+|+|||+|+.+++...... . .-..++|++....++... +.++++.++..... ..+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecCCh
Confidence 35789999999999999999987643211 1 113679999888777765 44455655543321 1223
Q ss_pred HHH---HHHHHHHHhcCCeEEEEEeCCCCc
Q 043850 170 LER---TDGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 170 ~~~---~~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
++. ...+...+...+.-|||+|.+-..
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~al 203 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSATAL 203 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcHHH
Confidence 333 233333344444679999998544
No 202
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.36 E-value=0.00077 Score=61.28 Aligned_cols=87 Identities=25% Similarity=0.235 Sum_probs=53.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCC-CCHHHHHHHHHHHHhc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLN-DSTLERTDGLRKRLNK 182 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~L~~ 182 (309)
-.++.|.|.+|+|||||+.+++...... -..++|++..+. ...+ ..-+..++...+.. .........+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4789999999999999999998876543 356788876543 3332 22244565443220 0001112334444444
Q ss_pred CCeEEEEEeCCCC
Q 043850 183 EMRVLIILDNIWT 195 (309)
Q Consensus 183 ~~r~LlVlDdv~~ 195 (309)
.+.-+||+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 4468999999844
No 203
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.36 E-value=0.0012 Score=57.19 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=62.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCH-HHHHHHHHHHhCCCCCC-----------C----
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDY-RKIEDQFAFDLGMKLDL-----------N---- 166 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~~l~~~~~~-----------~---- 166 (309)
.-+++.|.|.+|+|||+||.+++.....+ =..+++++....... .+-+...+..++..... .
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~ 112 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVESPANFVYTSLKERAKAMGVDFDKIEENIILIDAASSTEL 112 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCCchHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCchhh
Confidence 35789999999999999999987664332 346788887643321 11122223334332110 0
Q ss_pred -CCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC---------------CCCCCCcEEEEeeC
Q 043850 167 -DSTLERTDGLRKRLNKEMRVLIILDNIWTKLE---------------KDDQERCTIVLISR 212 (309)
Q Consensus 167 -~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~---------------~~~~~gs~iliTtR 212 (309)
.+..+....+.......+.-++|+|.+..... .....+..+++|+.
T Consensus 113 ~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~~~~L~~~lk~~~~t~ll~~e 174 (259)
T TIGR03878 113 RENVPNLLATLAYAIKEYKVKNTVIDSITGLYEAKEMMAREIVRQLFNFMKKWYQTALFVSQ 174 (259)
T ss_pred hhhHHHHHHHHHHHHHhhCCCEEEEcCchHhcccchHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 12344555555555444456899999853211 22345666777765
No 204
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.36 E-value=0.0019 Score=54.99 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=57.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----------------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL----------------- 165 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------------- 165 (309)
..+++.|.|.+|+|||+|+.+++...-.+ =..++|++..+. ..++.+.+ .+++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 35889999999999999999996554322 357888888654 44555443 333322110
Q ss_pred ---CCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 043850 166 ---NDSTLERTDGLRKRLNKEMRVLIILDNIW 194 (309)
Q Consensus 166 ---~~~~~~~~~~l~~~L~~~~r~LlVlDdv~ 194 (309)
..+.......+.+.+...+.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 12335666777777765346789999986
No 205
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.36 E-value=0.00031 Score=58.23 Aligned_cols=104 Identities=11% Similarity=0.156 Sum_probs=58.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYR-KIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKE 183 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 183 (309)
.+|.|+|+.|+||||++..+....... ....+++- .++.... .-...+..+- ....+.......++..|...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~-e~~~E~~~~~~~~~i~q~----~vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTI-EDPIEFVHESKRSLINQR----EVGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEE-cCCccccccCccceeeec----ccCCCccCHHHHHHHHhcCC
Confidence 478999999999999999887766532 33333332 1111100 0000111110 00112233455667777665
Q ss_pred CeEEEEEeCCCCccC-----CCCCCCcEEEEeeCCccc
Q 043850 184 MRVLIILDNIWTKLE-----KDDQERCTIVLISRSRDL 216 (309)
Q Consensus 184 ~r~LlVlDdv~~~~~-----~~~~~gs~iliTtR~~~v 216 (309)
+=++++|++.+... .....|..++.|+...+.
T Consensus 75 -pd~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 75 -PDVILVGEMRDLETIRLALTAAETGHLVMSTLHTNSA 111 (198)
T ss_pred -cCEEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcH
Confidence 67999999976544 222346668888887754
No 206
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.36 E-value=0.0016 Score=57.68 Aligned_cols=89 Identities=18% Similarity=0.271 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHhhc----CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCC
Q 043850 87 SRKEIFQVVMESLKD----DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMK 162 (309)
Q Consensus 87 gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 162 (309)
+|........+++.+ ....-+.|+|..|+|||.||..+++..... .+ .+.++++ .+++..+...++..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~-~v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GV-SSTLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CC-CEEEEEH------HHHHHHHHHHHhcC
Confidence 455555555555532 134679999999999999999999998743 23 3455544 35666665555321
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 043850 163 LDLNDSTLERTDGLRKRLNKEMRVLIILDNIW 194 (309)
Q Consensus 163 ~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~ 194 (309)
+. ....+.+.+ .=||||||+-
T Consensus 207 -----~~----~~~l~~l~~--~dlLiIDDiG 227 (306)
T PRK08939 207 -----SV----KEKIDAVKE--APVLMLDDIG 227 (306)
T ss_pred -----cH----HHHHHHhcC--CCEEEEecCC
Confidence 11 223333433 4799999984
No 207
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.35 E-value=0.0015 Score=52.65 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=31.4
Q ss_pred ccchHHHHHHHHHHhhc--CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 85 FDSRKEIFQVVMESLKD--DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 85 ~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
++|....+.++.+.+.. .....|.|+|..|+||+.+|+.+.+..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 35777777777776632 334677799999999999999998844
No 208
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.34 E-value=0.0017 Score=57.01 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
-+.++|++|+|||++|+.++......
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~ 85 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRL 85 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 58899999999999999888876543
No 209
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.34 E-value=0.00026 Score=55.03 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=31.8
Q ss_pred cchHHHHHHHHHHhh--cCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 86 DSRKEIFQVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 86 ~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
+|+...++++.+.+. ......|.|.|..|+||+++|+.++.....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~ 47 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR 47 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc
Confidence 466666677766663 244567899999999999999998876543
No 210
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.0006 Score=53.49 Aligned_cols=46 Identities=30% Similarity=0.447 Sum_probs=36.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD 164 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 164 (309)
+|.|.|++|+||||+|+.+++...-. .+ +.-.++++|++..|.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCHH
Confidence 68999999999999999999887643 12 234688889888887643
No 211
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.31 E-value=0.0035 Score=53.14 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=64.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC------------------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD------------------ 164 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------ 164 (309)
.-..+.|.|.+|+|||+|+.+++...-.+ -..++|++.... ...+... +++++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~~ 93 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKEK 93 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEcccccc
Confidence 34789999999999999999987654322 457788887443 3333322 222222110
Q ss_pred ------CCCCHHHHHHHHHHHHhc--CCeEEEEEeCCCCccC---------------CCCCCCcEEEEeeCCc
Q 043850 165 ------LNDSTLERTDGLRKRLNK--EMRVLIILDNIWTKLE---------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 165 ------~~~~~~~~~~~l~~~L~~--~~r~LlVlDdv~~~~~---------------~~~~~gs~iliTtR~~ 214 (309)
...+.++....+++.+.. .+.-++|+|.+..... .....++.+|+|+...
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~ 166 (229)
T TIGR03881 94 EDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYA 166 (229)
T ss_pred ccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 013455666666666543 1246889999854411 2234688899998743
No 212
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.31 E-value=0.0027 Score=53.82 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=57.9
Q ss_pred cccccchHHHHH---HHHHHhhcC------CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHH
Q 043850 82 YEIFDSRKEIFQ---VVMESLKDD------KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIE 152 (309)
Q Consensus 82 ~~~~~gR~~~~~---~l~~~L~~~------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 152 (309)
..+++|.++... -|++.|.++ .++-|..+|++|.|||.+|+.+++..++. | +.+. ..++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vk----at~l- 187 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVK----ATEL- 187 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEec----hHHH-
Confidence 346788776433 355666543 47899999999999999999999887764 2 1111 1111
Q ss_pred HHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 043850 153 DQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 153 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
|-+.. -+....+..+.+.-..--+|++.+|.++..
T Consensus 188 --iGehV-------Gdgar~Ihely~rA~~~aPcivFiDE~DAi 222 (368)
T COG1223 188 --IGEHV-------GDGARRIHELYERARKAAPCIVFIDELDAI 222 (368)
T ss_pred --HHHHh-------hhHHHHHHHHHHHHHhcCCeEEEehhhhhh
Confidence 11111 122334444555554445899999998654
No 213
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.31 E-value=0.0022 Score=51.83 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=45.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC-CCHHHHHHHHHHHhCCCCC---CCCCHHHHH-HHHHHHH
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT-PDYRKIEDQFAFDLGMKLD---LNDSTLERT-DGLRKRL 180 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~-~~l~~~L 180 (309)
++.++|++|+||||++..++...... -..++.++.... ....+.+...+...+.+.. ...+..+.. +.+...+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999999876644 123444444322 1233334444444443211 112333333 2333333
Q ss_pred hcCCeEEEEEeCCC
Q 043850 181 NKEMRVLIILDNIW 194 (309)
Q Consensus 181 ~~~~r~LlVlDdv~ 194 (309)
..+ .-++|+|-.-
T Consensus 80 ~~~-~d~viiDt~g 92 (173)
T cd03115 80 EEN-FDVVIVDTAG 92 (173)
T ss_pred hCC-CCEEEEECcc
Confidence 433 3356677753
No 214
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.31 E-value=0.0012 Score=64.93 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=60.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----NDSTLERTDGLRK 178 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 178 (309)
-+++-|.|.+|+|||||+.+++...... =..++|++....++. ..++++|.+.+. ....+.....+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 5788999999999999998877654433 356799988777663 367777776432 3445556666666
Q ss_pred HHhcCCeEEEEEeCCC
Q 043850 179 RLNKEMRVLIILDNIW 194 (309)
Q Consensus 179 ~L~~~~r~LlVlDdv~ 194 (309)
.+.....-|||+|.+.
T Consensus 133 lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 133 LIRSGALDIVVIDSVA 148 (790)
T ss_pred HhhcCCCeEEEEcchh
Confidence 6655557799999985
No 215
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0014 Score=62.72 Aligned_cols=74 Identities=23% Similarity=0.212 Sum_probs=48.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC--CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP--DYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLN 181 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 181 (309)
..-|.|.|..|+|||+||+.+++... ..+.-++.+++++.-. .++.+.+.+... ..+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v-----------------fse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV-----------------FSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHH-----------------HHHHHh
Confidence 46788999999999999999999887 4455577777776422 233333322221 122333
Q ss_pred cCCeEEEEEeCCCCc
Q 043850 182 KEMRVLIILDNIWTK 196 (309)
Q Consensus 182 ~~~r~LlVlDdv~~~ 196 (309)
.. +-+|||||++..
T Consensus 493 ~~-PSiIvLDdld~l 506 (952)
T KOG0735|consen 493 YA-PSIIVLDDLDCL 506 (952)
T ss_pred hC-CcEEEEcchhhh
Confidence 33 789999998654
No 216
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.29 E-value=0.00057 Score=56.03 Aligned_cols=21 Identities=33% Similarity=0.456 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 043850 106 VIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~ 126 (309)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999984
No 217
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0023 Score=58.03 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=47.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLN 181 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 181 (309)
++++|+|+|++|+||||++..++.....+ . ..+..++..... ...+-+......++.+.....+...+...+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-K-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-C-CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 35799999999999999999998876543 1 234455543221 12223334444455443322344444433332221
Q ss_pred cCCeEEEEEeCC
Q 043850 182 KEMRVLIILDNI 193 (309)
Q Consensus 182 ~~~r~LlVlDdv 193 (309)
..+.=+|++|-.
T Consensus 318 ~~~~DvVLIDTa 329 (436)
T PRK11889 318 EARVDYILIDTA 329 (436)
T ss_pred ccCCCEEEEeCc
Confidence 111245666665
No 218
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0043 Score=60.50 Aligned_cols=51 Identities=24% Similarity=0.197 Sum_probs=38.3
Q ss_pred CcccccchHH---HHHHHHHHhhcC---------CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 81 DYEIFDSRKE---IFQVVMESLKDD---------KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 81 ~~~~~~gR~~---~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
...++.|-++ |+.++++.|.++ -++=+.|+|++|+|||-||++++-...+-
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP 371 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP 371 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc
Confidence 3456667654 666677777543 25678999999999999999999877664
No 219
>PRK06921 hypothetical protein; Provisional
Probab=97.28 E-value=0.0019 Score=56.13 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=44.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNK 182 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 182 (309)
....+.++|..|+|||.||..+++....+. -..++|++. .+++..+...+ .. .....+.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~-~~~~~~~~~~ 177 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DL-LEAKLNRMKK 177 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HH-HHHHHHHhcC
Confidence 457899999999999999999999876431 234566654 23333333222 01 1122333433
Q ss_pred CCeEEEEEeCC
Q 043850 183 EMRVLIILDNI 193 (309)
Q Consensus 183 ~~r~LlVlDdv 193 (309)
--||||||+
T Consensus 178 --~dlLiIDDl 186 (266)
T PRK06921 178 --VEVLFIDDL 186 (266)
T ss_pred --CCEEEEecc
Confidence 469999999
No 220
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.28 E-value=0.0022 Score=57.51 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=26.4
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
..+..++|+|++|+|||.+|+.+++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 356889999999999999999999987754
No 221
>PRK08233 hypothetical protein; Provisional
Probab=97.28 E-value=0.0013 Score=53.51 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+|+|.|.+|+||||||..++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998754
No 222
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.28 E-value=0.0016 Score=54.60 Aligned_cols=121 Identities=14% Similarity=0.179 Sum_probs=70.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEe----------------------cCCC------C-------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEV----------------------TQTP------D------- 147 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~----------------------~~~~------~------- 147 (309)
.--.++|+|++|+|||||...+..-.+.. .+.+++.. -|.+ +
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 34689999999999999999886433321 12222211 0111 1
Q ss_pred -----------HHHHHHHHHHHhCCCC-------CCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-----------
Q 043850 148 -----------YRKIEDQFAFDLGMKL-------DLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE----------- 198 (309)
Q Consensus 148 -----------~~~~~~~i~~~l~~~~-------~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~----------- 198 (309)
.......+++.++... ..-..-++..-.+.+.|..+ +-+|+-|+--...+
T Consensus 107 pl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~-P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 107 PLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN-PKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred HHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC-CCeEEeeCccccCChHHHHHHHHHH
Confidence 1233455556655531 11122233444555666665 78999998755544
Q ss_pred --CCCCCCcEEEEeeCCccccccccCCCceEecC
Q 043850 199 --KDDQERCTIVLISRSRDLLCNDMNSQKDFWID 230 (309)
Q Consensus 199 --~~~~~gs~iliTtR~~~v~~~~~~~~~~~~l~ 230 (309)
.....|..||+.|.++.++. ...+.+.+.
T Consensus 186 ~~~~~~~g~tii~VTHd~~lA~---~~dr~i~l~ 216 (226)
T COG1136 186 RELNKERGKTIIMVTHDPELAK---YADRVIELK 216 (226)
T ss_pred HHHHHhcCCEEEEEcCCHHHHH---hCCEEEEEe
Confidence 33455778999999998865 344454444
No 223
>PRK14974 cell division protein FtsY; Provisional
Probab=97.28 E-value=0.0052 Score=55.06 Aligned_cols=90 Identities=23% Similarity=0.248 Sum_probs=51.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC--CHHHHHHHHHHHhCCCCCC---CCCHHHHH-HHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP--DYRKIEDQFAFDLGMKLDL---NDSTLERT-DGL 176 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~---~~~~~~~~-~~l 176 (309)
++.+|.++|++|+||||++..++...... .+ .++.+... .+ ...+-+......++.+... ..++.... ..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~D-t~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGD-TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecCC-cCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 36799999999999999999998877643 23 33344432 22 2334456667777765322 12332322 222
Q ss_pred HHHHhcCCeEEEEEeCCCCc
Q 043850 177 RKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 177 ~~~L~~~~r~LlVlDdv~~~ 196 (309)
......+ .-++++|-.-..
T Consensus 216 ~~~~~~~-~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARG-IDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCC-CCEEEEECCCcc
Confidence 2222222 248888887544
No 224
>PTZ00035 Rad51 protein; Provisional
Probab=97.28 E-value=0.0022 Score=57.56 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=57.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhc---cc-CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------CCCHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVME---DK-LFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL---------NDSTL 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 170 (309)
-.++.|+|.+|+|||+|+.+++-.... .. .-..++|++....++... +.++++.++..... ..+.+
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCCHH
Confidence 578999999999999999998765431 00 123577999877777666 44456665544221 12333
Q ss_pred HHHHH---HHHHHhcCCeEEEEEeCCCC
Q 043850 171 ERTDG---LRKRLNKEMRVLIILDNIWT 195 (309)
Q Consensus 171 ~~~~~---l~~~L~~~~r~LlVlDdv~~ 195 (309)
+.... +...+...+--|||+|.+..
T Consensus 197 ~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 197 HQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 33333 33344444457999999854
No 225
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.0027 Score=57.29 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=56.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLN 181 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 181 (309)
+.+++.++|+.|+||||++..++.....+ -..+.+++..... ...+-+....+.++.+.....+..++...+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 46899999999999999999998776443 2356677664332 23455666666666654333455555444433221
Q ss_pred cCCeEEEEEeCCCC
Q 043850 182 KEMRVLIILDNIWT 195 (309)
Q Consensus 182 ~~~r~LlVlDdv~~ 195 (309)
....=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 12246777887744
No 226
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.0004 Score=54.48 Aligned_cols=36 Identities=36% Similarity=0.416 Sum_probs=28.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCC-eEEEE
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFD-KVVMA 140 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv 140 (309)
.--|+|.|++|+|||||++.+++..+... |. +-+|.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kvgGf~t 41 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG-YKVGGFIT 41 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC-ceeeeEEe
Confidence 34689999999999999999999988764 54 33443
No 227
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0087 Score=53.37 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 91 IFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 91 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..+.|.+.+..+. ...+.+.|+.|+||+++|..++...--
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 4456667776554 467889999999999999999887654
No 228
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.25 E-value=0.0034 Score=53.29 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=50.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------------CCC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL---------------NDS 168 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------~~~ 168 (309)
..++.|.|.+|+||||||.+++.....+ =..+++++.. .+..++++.+ .+++..... ...
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~e--~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~ 98 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVSTQ--LTTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSG 98 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeCC--CCHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccC
Confidence 4699999999999999987776655322 1345666633 3456666665 344432211 011
Q ss_pred ---HHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 043850 169 ---TLERTDGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 169 ---~~~~~~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
.......+.+.....++-++|+|.+...
T Consensus 99 ~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~ 129 (230)
T PRK08533 99 NSEKRKFLKKLMNTRRFYEKDVIIIDSLSSL 129 (230)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECccHH
Confidence 1223333334433223578999998653
No 229
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.25 E-value=0.0025 Score=51.75 Aligned_cols=115 Identities=25% Similarity=0.241 Sum_probs=63.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhc-c-----cCCC--eEEEEEecCCCCHHHHHHHHHHHhCCCCC---C---CCC
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVME-D-----KLFD--KVVMAEVTQTPDYRKIEDQFAFDLGMKLD---L---NDS 168 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~-----~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~---~~~ 168 (309)
.-.+++|+|+.|+|||||.+.+...... . ..|. .+.|+ .+ .+.+..++.... . ..+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 3478999999999999999988632110 0 0010 12222 11 456666664321 1 112
Q ss_pred H--HHHHHHHHHHHhcCCeEEEEEeCCCCccC------------CCCCCCcEEEEeeCCccccccccCCCceEecC
Q 043850 169 T--LERTDGLRKRLNKEMRVLIILDNIWTKLE------------KDDQERCTIVLISRSRDLLCNDMNSQKDFWID 230 (309)
Q Consensus 169 ~--~~~~~~l~~~L~~~~r~LlVlDdv~~~~~------------~~~~~gs~iliTtR~~~v~~~~~~~~~~~~l~ 230 (309)
. .......+..+.+..+-+++||+.....+ .....|..||++|++..... ...+.+.+.
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~---~~d~i~~l~ 162 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS---SADWIIDFG 162 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH---hCCEEEEEC
Confidence 1 22233333333331157888999877666 11224677999999887532 245555554
No 230
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.25 E-value=0.00046 Score=65.16 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=41.8
Q ss_pred ccccchHHHHHHHHHHh------hcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 83 EIFDSRKEIFQVVMESL------KDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.+++|-++.+++|++.| .+...+++.++|++|+||||||+.+++-.+.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 46899999999999988 2345689999999999999999999987765
No 231
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0045 Score=56.52 Aligned_cols=90 Identities=19% Similarity=0.211 Sum_probs=53.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhccc--CCCeEEEEEecCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDK--LFDKVVMAEVTQTP-DYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKR 179 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 179 (309)
.+.+|.++|+.|+||||.+..++....... .-..+..+++.... ....-+...++.++.+.....+..+....+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~- 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ- 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-
Confidence 357999999999999999999988765321 12345556554321 22333555666666654433344444333333
Q ss_pred HhcCCeEEEEEeCCCC
Q 043850 180 LNKEMRVLIILDNIWT 195 (309)
Q Consensus 180 L~~~~r~LlVlDdv~~ 195 (309)
+ .+ .-++++|..-.
T Consensus 252 ~-~~-~DlVLIDTaGr 265 (388)
T PRK12723 252 S-KD-FDLVLVDTIGK 265 (388)
T ss_pred h-CC-CCEEEEcCCCC
Confidence 2 22 46777887733
No 232
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.23 E-value=0.0013 Score=53.68 Aligned_cols=105 Identities=16% Similarity=0.131 Sum_probs=59.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------------CCCHH
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL---------------NDSTL 170 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------~~~~~ 170 (309)
++.|.|.+|+|||+|+.+++...-.. =..++|++... +..++...+ .+++.+... ..+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~~-~~~g~~~~~l~~~g~l~~~d~~~~~~s~~ 75 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIENA-ESLGWDLERLEDEGLLAIVDADPDEIGPA 75 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHHH-HHcCCChHHHHhcCCeEEEecCccccchh
Confidence 36799999999999999987765432 24577887654 344443332 222322110 00111
Q ss_pred ------HHHHHHHHHHhcCCeEEEEEeCCCCccC---------------CCCCCCcEEEEeeCCcc
Q 043850 171 ------ERTDGLRKRLNKEMRVLIILDNIWTKLE---------------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 171 ------~~~~~l~~~L~~~~r~LlVlDdv~~~~~---------------~~~~~gs~iliTtR~~~ 215 (309)
+....+.......+.-++|+|.+..... .....|..+|+|+....
T Consensus 76 ~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~ 141 (187)
T cd01124 76 ESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSG 141 (187)
T ss_pred hhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 2234444444333468999999854211 11223667888887654
No 233
>PRK06547 hypothetical protein; Provisional
Probab=97.23 E-value=0.00056 Score=55.31 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=28.4
Q ss_pred HHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 95 VMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 95 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+...+......+|+|.|.+|+||||+|+.+.....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33445566788999999999999999999988754
No 234
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.22 E-value=0.0037 Score=50.93 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=62.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC--CCCHHHH------HHHHHHHhCCCCCC-----CCCH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ--TPDYRKI------EDQFAFDLGMKLDL-----NDST 169 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~------~~~i~~~l~~~~~~-----~~~~ 169 (309)
+-.+++|.|..|+|||||++.++..... ..+.++++-.. ..+.... ..++++.++..... ..+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4479999999999999999999876542 34444443211 1122111 12245555443211 1222
Q ss_pred -HHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCccc
Q 043850 170 -LERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRDL 216 (309)
Q Consensus 170 -~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~v 216 (309)
+...-.+...+..+ +-+++||+.....+ .....+..||++|.+...
T Consensus 101 G~~qrl~laral~~~-p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 101 GERQRVLLARALAQE-PPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 22223344445554 68999999877666 112226678999988764
No 235
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.22 E-value=0.0086 Score=50.25 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=40.1
Q ss_pred CcccccchHHHHHHHHHHh----hcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 81 DYEIFDSRKEIFQVVMESL----KDDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
....++|-+...+.|++.. ......-|.++|.-|+|||+|++.+.+....+
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 3456788887777776654 33455779999999999999999999988765
No 236
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.20 E-value=0.0043 Score=61.88 Aligned_cols=47 Identities=23% Similarity=0.200 Sum_probs=39.0
Q ss_pred ccccchHHHHHHHHHHhhc------CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 83 EIFDSRKEIFQVVMESLKD------DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+++|.++..++|+++|.. ....++.++|++|+||||+|+.++....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~ 374 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG 374 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999988741 2456899999999999999999998655
No 237
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.0038 Score=54.20 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=57.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCC-CCCCCCCHHHHHHHH---HH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGM-KLDLNDSTLERTDGL---RK 178 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~l---~~ 178 (309)
.-+++=|+|+.|+||||||.+++-..... -..++|++....+++..+..-....+.. -...+.+.++....+ ..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 34788899999999999999988776654 4488999998888876654333221211 111123333333333 33
Q ss_pred HHhcCCeEEEEEeCCCCcc
Q 043850 179 RLNKEMRVLIILDNIWTKL 197 (309)
Q Consensus 179 ~L~~~~r~LlVlDdv~~~~ 197 (309)
.... +--|+|+|.+-...
T Consensus 137 ~~~~-~i~LvVVDSvaa~~ 154 (279)
T COG0468 137 SGAE-KIDLLVVDSVAALV 154 (279)
T ss_pred hccC-CCCEEEEecCcccc
Confidence 3333 25799999985543
No 238
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.19 E-value=0.0013 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+|.|+|++|+||||+|+.++....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999987653
No 239
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.19 E-value=0.0014 Score=65.47 Aligned_cols=47 Identities=28% Similarity=0.293 Sum_probs=37.6
Q ss_pred cccchHHHHHHHHHHhh------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 84 IFDSRKEIFQVVMESLK------DDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.++|.++..+.|.+++. ....+++.++|++|+|||++|+.+++....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46788888888887663 123458999999999999999999988753
No 240
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.19 E-value=0.003 Score=55.36 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 88 RKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 88 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|....+.+........+.+|+|.|..|+||||||+.+.....
T Consensus 46 ~~~~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 46 RQAVLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred HHHHHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444444433322234578999999999999999988766554
No 241
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.19 E-value=0.00064 Score=63.16 Aligned_cols=51 Identities=10% Similarity=0.262 Sum_probs=41.7
Q ss_pred ccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCC
Q 043850 83 EIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFD 135 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~ 135 (309)
..|+||++.++.+...+..+ .-|.|.|++|+|||+||+.+.........|.
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 46899999999999888654 5788999999999999999998765433343
No 242
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.19 E-value=0.00067 Score=57.41 Aligned_cols=106 Identities=21% Similarity=0.270 Sum_probs=65.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCC----------------CC-
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKL----------------DL- 165 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------------~~- 165 (309)
..+++.|.|.+|+|||+|+.+++...-.+ .=+.++|++..+.+ .++.+.+. .++.+. ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 45899999999999999999977554322 02457788875543 44444432 332210 00
Q ss_pred ---CCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------CCCCCCcEEEEeeC
Q 043850 166 ---NDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE----------------KDDQERCTIVLISR 212 (309)
Q Consensus 166 ---~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~----------------~~~~~gs~iliTtR 212 (309)
..+.......+.+.+...+...+|+|.+..... .....|+.+|+|+.
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 246677788888887664468999999865511 22445666777776
No 243
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.19 E-value=0.0011 Score=51.48 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=32.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHH
Q 043850 107 IGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIED 153 (309)
Q Consensus 107 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 153 (309)
|.|+|.+|+|||+||+.++..... ...-+.++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEecccccccccee
Confidence 679999999999999999988732 244567777777776654
No 244
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.19 E-value=0.0039 Score=53.40 Aligned_cols=125 Identities=21% Similarity=0.307 Sum_probs=73.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhccc---CCC--------------eEEEEEec----------------CC----
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDK---LFD--------------KVVMAEVT----------------QT---- 145 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~--------------~~~wv~~~----------------~~---- 145 (309)
.-.+++|.|+.|+|||||.+.++.-..... ..+ ...++.-+ ..
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 457999999999999999999987554210 000 12222110 00
Q ss_pred ----CCH--HHHHHHHHHHhCCC------CCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CC
Q 043850 146 ----PDY--RKIEDQFAFDLGMK------LDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KD 200 (309)
Q Consensus 146 ----~~~--~~~~~~i~~~l~~~------~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~ 200 (309)
.+. .+.....++.++.. ...-..-+.....+...|.++ .=+|+||+--+..+ ..
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~-~~iLLLDEPTs~LDi~~Q~evl~ll~~l~ 185 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQE-TPILLLDEPTSHLDIAHQIEVLELLRDLN 185 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcC-CCEEEeCCCccccCHHHHHHHHHHHHHHH
Confidence 111 12344445555432 112122333444556667775 68899999877766 34
Q ss_pred CCCCcEEEEeeCCccccccccCCCceEecC
Q 043850 201 DQERCTIVLISRSRDLLCNDMNSQKDFWID 230 (309)
Q Consensus 201 ~~~gs~iliTtR~~~v~~~~~~~~~~~~l~ 230 (309)
...|..||+++.+.+.|. .-+++++-++
T Consensus 186 ~~~~~tvv~vlHDlN~A~--ryad~~i~lk 213 (258)
T COG1120 186 REKGLTVVMVLHDLNLAA--RYADHLILLK 213 (258)
T ss_pred HhcCCEEEEEecCHHHHH--HhCCEEEEEE
Confidence 456788999999998765 3455666665
No 245
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0022 Score=58.68 Aligned_cols=26 Identities=38% Similarity=0.438 Sum_probs=22.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..++.++|++|+||||++.+++....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~ 248 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYF 248 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999987653
No 246
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.17 E-value=0.0053 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.+++|+|+.|.|||||.+.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999997654
No 247
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.17 E-value=0.0025 Score=51.81 Aligned_cols=104 Identities=20% Similarity=0.207 Sum_probs=59.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEE------ecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAE------VTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGL 176 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 176 (309)
.-.+++|+|..|+|||||++.++..... ..+.+++. +.+... - ..-+...-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~q~~~-----------------L-SgGq~qrv~l 82 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP---NGDNDEWDGITPVYKPQYID-----------------L-SGGELQRVAI 82 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC---CCcEEEECCEEEEEEcccCC-----------------C-CHHHHHHHHH
Confidence 4479999999999999999999876543 22333321 111111 1 1112223334
Q ss_pred HHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCccccccccCCCceEecC
Q 043850 177 RKRLNKEMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRDLLCNDMNSQKDFWID 230 (309)
Q Consensus 177 ~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~v~~~~~~~~~~~~l~ 230 (309)
...+..+ +-+++||+..+..+ .....+..||++|.+...... -..+.+.+.
T Consensus 83 aral~~~-p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~--~~d~i~~l~ 146 (177)
T cd03222 83 AAALLRN-ATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY--LSDRIHVFE 146 (177)
T ss_pred HHHHhcC-CCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH--hCCEEEEEc
Confidence 4444454 68899999877666 111223568888888764321 233455554
No 248
>PRK05973 replicative DNA helicase; Provisional
Probab=97.17 E-value=0.0028 Score=53.78 Aligned_cols=143 Identities=18% Similarity=0.128 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCCCCccccCCCCCccccccCCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 49 AAEDAANLLRKGNFSSVSYHPAPDRAELRDVKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 49 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+.+.++.+.....|...++...... .+.. .+++..-+ ..-.++.|.|.+|+|||+|+.+++...
T Consensus 25 ~~~~~~~~a~~~g~~~w~~~~~~~~----------~~~p----~~~l~GGl--~~Gsl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 25 LHEALDRIAAEEGFSSWSLLAAKAA----------ATTP----AEELFSQL--KPGDLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred HHHHHHHHHHHhccchHHHHHHhcc----------CCCC----HHHhcCCC--CCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4556666655667766655432221 1111 22333333 234789999999999999999998766
Q ss_pred hcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----------CCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc
Q 043850 129 MEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----------NDSTLERTDGLRKRLNKEMRVLIILDNIWTKL 197 (309)
Q Consensus 129 ~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----------~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~ 197 (309)
-.+ -..+++++.... ..++...+. +++.+... ....+.....+.. ..+.-++|+|.+....
T Consensus 89 a~~--Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~~ii~~l~~---~~~~~lVVIDsLq~l~ 160 (237)
T PRK05973 89 MKS--GRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICADYIIARLAS---APRGTLVVIDYLQLLD 160 (237)
T ss_pred Hhc--CCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCHHHHHHHHHH---hhCCCEEEEEcHHHHh
Confidence 433 345677776554 344444432 22332111 1122222222222 2224699999985432
Q ss_pred C----------------CCCCCCcEEEEeeCCcc
Q 043850 198 E----------------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 198 ~----------------~~~~~gs~iliTtR~~~ 215 (309)
. .....|..+|+|+....
T Consensus 161 ~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r 194 (237)
T PRK05973 161 QRREKPDLSVQVRALKSFARERGLIIVFISQIDR 194 (237)
T ss_pred hcccchhHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 2 22446777787776554
No 249
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.16 E-value=0.0032 Score=53.06 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=27.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT 145 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 145 (309)
+|+|.|.+|+||||||+.+.........=..+..++....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 5899999999999999999987753100123445554443
No 250
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.16 E-value=0.00042 Score=52.74 Aligned_cols=22 Identities=45% Similarity=0.821 Sum_probs=20.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q 043850 107 IGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 107 i~I~G~~GiGKTtLa~~v~~~~ 128 (309)
|+|.|.+|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 251
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.15 E-value=0.00093 Score=53.56 Aligned_cols=106 Identities=19% Similarity=0.226 Sum_probs=60.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC--CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT--PDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRL 180 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L 180 (309)
.-.+++|.|..|+|||||.+.++..... ..+.+++.-..- .+..+. ....++.-..- ..-+...-.+...+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~qL-S~G~~qrl~laral 97 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKP---DSGEILVDGKEVSFASPRDA---RRAGIAMVYQL-SVGERQMVEIARAL 97 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEECCcCCHHHH---HhcCeEEEEec-CHHHHHHHHHHHHH
Confidence 3478999999999999999999876532 345555532211 111111 11112211111 11222333344445
Q ss_pred hcCCeEEEEEeCCCCccC------------CCCCCCcEEEEeeCCccc
Q 043850 181 NKEMRVLIILDNIWTKLE------------KDDQERCTIVLISRSRDL 216 (309)
Q Consensus 181 ~~~~r~LlVlDdv~~~~~------------~~~~~gs~iliTtR~~~v 216 (309)
..+ +-++++|+..+..+ .....+..||++|++...
T Consensus 98 ~~~-p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 98 ARN-ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred hcC-CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 554 68899999977666 112346678888888753
No 252
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.042 Score=46.64 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=58.4
Q ss_pred cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEec-CCCCHHHHHHHHHHHhCCCCCCC--CCHHHHHHHHH
Q 043850 101 DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT-QTPDYRKIEDQFAFDLGMKLDLN--DSTLERTDGLR 177 (309)
Q Consensus 101 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~ 177 (309)
.++..++.++|.-|+|||.+.+......... .... +.+. ...+...+...++..+..++... ...+.....+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d---~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED---QVAV-VVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC---ceEE-EEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 4556799999999999999999554433322 1112 3333 34466778888888887633321 12233444454
Q ss_pred HHHhcCCe-EEEEEeCCCCccC
Q 043850 178 KRLNKEMR-VLIILDNIWTKLE 198 (309)
Q Consensus 178 ~~L~~~~r-~LlVlDdv~~~~~ 198 (309)
+..++.+| ..++.|+......
T Consensus 124 al~~~g~r~v~l~vdEah~L~~ 145 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLND 145 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhCh
Confidence 55544445 8999999866554
No 253
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.14 E-value=0.0039 Score=57.70 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=23.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+.++.++|.+|+||||+|..++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367899999999999999999887754
No 254
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.011 Score=53.08 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 90 EIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 90 ~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..-++|.+.+..++ ...+.+.|+.|+||+++|..++...--
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC 50 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMC 50 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcC
Confidence 34567777776554 567889999999999999999887643
No 255
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.14 E-value=0.0046 Score=50.74 Aligned_cols=91 Identities=20% Similarity=0.187 Sum_probs=49.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCC--------CeEEEEEecCCCCHHHHHHHHHHHhCCC--------------
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLF--------DKVVMAEVTQTPDYRKIEDQFAFDLGMK-------------- 162 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------------- 162 (309)
.++.|.|.+|+|||+++.+++........| ..++|++..... ..+.+.+.......
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~--~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE--SQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H--HHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH--HHHHHHHHHHhcccCCccceEEeecccc
Confidence 588999999999999999998887653223 268888876653 22222222211110
Q ss_pred --------CCCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc
Q 043850 163 --------LDLNDSTLERTDGLRKRLNK-EMRVLIILDNIWTKL 197 (309)
Q Consensus 163 --------~~~~~~~~~~~~~l~~~L~~-~~r~LlVlDdv~~~~ 197 (309)
...........+.+.+.+.. ...-++|+|++....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~ 154 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLH 154 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG-
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHh
Confidence 00001123445667777765 446799999885543
No 256
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.14 E-value=0.0031 Score=58.09 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=62.3
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCC
Q 043850 87 SRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLN 166 (309)
Q Consensus 87 gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 166 (309)
.|...+.++.+.+..... ++.|.|+-++|||||++.+....... .++++..+......-+.+.
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~----------- 83 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDL----------- 83 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHH-----------
Confidence 455666677766654433 99999999999999996666554332 4555443321111100111
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--------CCCCCCcEEEEeeCCcccc
Q 043850 167 DSTLERTDGLRKRLNKEMRVLIILDNIWTKLE--------KDDQERCTIVLISRSRDLL 217 (309)
Q Consensus 167 ~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~--------~~~~~gs~iliTtR~~~v~ 217 (309)
...+.+.-.. ++.+++||.|..... ...++. +|++|+-+....
T Consensus 84 ------~~~~~~~~~~-~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll 134 (398)
T COG1373 84 ------LRAYIELKER-EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLL 134 (398)
T ss_pred ------HHHHHHhhcc-CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhh
Confidence 1111111111 368999999988777 344444 788888887654
No 257
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.13 E-value=0.0029 Score=51.41 Aligned_cols=108 Identities=15% Similarity=0.158 Sum_probs=58.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCC--------------CCCCC
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKL--------------DLNDS 168 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------------~~~~~ 168 (309)
.-.+++|.|..|+|||||++.++...... .+.++++-. ++......+...++.-. ....+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 34789999999999999999998765432 233333211 11111111111111000 00111
Q ss_pred H-HHHHHHHHHHHhcCCeEEEEEeCCCCccC-----------CCCCCCcEEEEeeCCcccc
Q 043850 169 T-LERTDGLRKRLNKEMRVLIILDNIWTKLE-----------KDDQERCTIVLISRSRDLL 217 (309)
Q Consensus 169 ~-~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-----------~~~~~gs~iliTtR~~~v~ 217 (309)
. +...-.+...+..+ +-+++||+..+..+ .....+..||++|++....
T Consensus 101 ~G~~qrv~laral~~~-p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 101 GGERQRLALARILLQD-APIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 1 22222334444454 68999999987766 1112367789999888654
No 258
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.13 E-value=0.0013 Score=59.99 Aligned_cols=93 Identities=19% Similarity=0.260 Sum_probs=59.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCC--eEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFD--KVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRL 180 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L 180 (309)
....+.|+|..|.|||.|++.+.+..... .. .+++++ .+.....++..+.. ......++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~--~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALAN--GPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhh--CCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHhh
Confidence 36889999999999999999999998765 43 344442 23444444444321 2234455555
Q ss_pred hcCCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCcc
Q 043850 181 NKEMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 181 ~~~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~ 215 (309)
. -=++++||++.... .....|-.||+|++...
T Consensus 175 -~--~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P 219 (408)
T COG0593 175 -S--LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPP 219 (408)
T ss_pred -c--cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCc
Confidence 2 35889999966433 22333447999987664
No 259
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.12 E-value=0.0062 Score=53.08 Aligned_cols=90 Identities=22% Similarity=0.260 Sum_probs=50.1
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCCCC---CCCCHHHH-HHHH
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGMKLD---LNDSTLER-TDGL 176 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~-~~~l 176 (309)
.+.+++.++|++|+||||++..++...... -..+.+++..... ...+-+....+..+.+.. ...++... ...+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 346899999999999999999998877543 2356666654211 112333444555553311 11223222 2333
Q ss_pred HHHHhcCCeEEEEEeCCC
Q 043850 177 RKRLNKEMRVLIILDNIW 194 (309)
Q Consensus 177 ~~~L~~~~r~LlVlDdv~ 194 (309)
.....++ .-++++|-.-
T Consensus 148 ~~~~~~~-~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARN-IDVVLIDTAG 164 (272)
T ss_pred HHHHHCC-CCEEEEeCCC
Confidence 3333333 3577777763
No 260
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.12 E-value=0.0005 Score=56.78 Aligned_cols=26 Identities=42% Similarity=0.641 Sum_probs=23.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
+|+|.|.+|+||||||+.+.......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988754
No 261
>PRK10867 signal recognition particle protein; Provisional
Probab=97.11 E-value=0.0039 Score=57.69 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=24.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.+.+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999988888766543
No 262
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.09 E-value=0.0028 Score=51.29 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=58.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC--CCCHHHHHHHHHHHhCCCCCC----C-------CCH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ--TPDYRKIEDQFAFDLGMKLDL----N-------DST 169 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~----~-------~~~ 169 (309)
.-.+++|+|..|+|||||.+.++..... ..+.++++-.. ....... ...++.-... + .+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~ 99 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRP---TSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSG 99 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC---CCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCH
Confidence 3468999999999999999999876542 23333332111 0111111 1111110000 0 111
Q ss_pred -HHHHHHHHHHHhcCCeEEEEEeCCCCccC------------CCCCCCcEEEEeeCCcccc
Q 043850 170 -LERTDGLRKRLNKEMRVLIILDNIWTKLE------------KDDQERCTIVLISRSRDLL 217 (309)
Q Consensus 170 -~~~~~~l~~~L~~~~r~LlVlDdv~~~~~------------~~~~~gs~iliTtR~~~v~ 217 (309)
+...-.+...|..+ +-+++||+.....+ .....|..||++|.+....
T Consensus 100 G~~qrv~la~al~~~-p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 100 GQRQRLGLARALYGN-PRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 12222344444454 57999999977766 1123467788988887653
No 263
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0032 Score=59.26 Aligned_cols=89 Identities=24% Similarity=0.297 Sum_probs=49.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC-CCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT-PDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLN 181 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 181 (309)
...+|+|+|.+|+||||++..++...........+..++.... ....+.+......++.......+..++...+ +.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL-~~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLL-ERLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHH-HHhc
Confidence 3579999999999999999998876654322234555554321 1222333333344444333323333333333 3333
Q ss_pred cCCeEEEEEeCCC
Q 043850 182 KEMRVLIILDNIW 194 (309)
Q Consensus 182 ~~~r~LlVlDdv~ 194 (309)
+ .-+|++|..-
T Consensus 428 ~--~DLVLIDTaG 438 (559)
T PRK12727 428 D--YKLVLIDTAG 438 (559)
T ss_pred c--CCEEEecCCC
Confidence 2 3577788763
No 264
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.09 E-value=0.0038 Score=50.16 Aligned_cols=106 Identities=15% Similarity=0.166 Sum_probs=58.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEE-------EecCCCCH--HHHHHHHHHHhCCCCCCCCCHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMA-------EVTQTPDY--RKIEDQFAFDLGMKLDLNDSTLERT 173 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv-------~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~ 173 (309)
.-.+++|+|..|+|||||++.++...... .+.+++ .+.+.+.. ..+...+... ....-..-+...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~r 99 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQR 99 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHH
Confidence 44789999999999999999998765432 222222 12232221 1222222210 111111222233
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCccC----------CCCCCCcEEEEeeCCccc
Q 043850 174 DGLRKRLNKEMRVLIILDNIWTKLE----------KDDQERCTIVLISRSRDL 216 (309)
Q Consensus 174 ~~l~~~L~~~~r~LlVlDdv~~~~~----------~~~~~gs~iliTtR~~~v 216 (309)
-.+...+..+ +-+++||+..+..+ ... .+..+|++|.+...
T Consensus 100 v~laral~~~-p~~lllDEPt~~LD~~~~~~l~~~l~~-~~~tiiivsh~~~~ 150 (166)
T cd03223 100 LAFARLLLHK-PKFVFLDEATSALDEESEDRLYQLLKE-LGITVISVGHRPSL 150 (166)
T ss_pred HHHHHHHHcC-CCEEEEECCccccCHHHHHHHHHHHHH-hCCEEEEEeCChhH
Confidence 3344455554 68899999877666 111 14568888888764
No 265
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0077 Score=50.91 Aligned_cols=49 Identities=27% Similarity=0.245 Sum_probs=35.7
Q ss_pred ccccchHHHHHHHHHHhh-------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 83 EIFDSRKEIFQVVMESLK-------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.++-|-+-..+++.+..+ -+.++-|.++|++|+|||.||+.|+++....
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~ 216 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA 216 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh
Confidence 345566655555555541 1457889999999999999999999876654
No 266
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.07 E-value=0.00059 Score=53.15 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999986544
No 267
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.07 E-value=0.0052 Score=56.97 Aligned_cols=86 Identities=21% Similarity=0.233 Sum_probs=50.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh-cccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM-EDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLN 181 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 181 (309)
..++.++|++|+||||++..++.... .. .-..+..++..... ...+-+....+.++.+.....+..+....+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 46899999999999999999887765 22 13456666654321 12233444455566554333344444444433 22
Q ss_pred cCCeEEEEEeCC
Q 043850 182 KEMRVLIILDNI 193 (309)
Q Consensus 182 ~~~r~LlVlDdv 193 (309)
+ .=+|++|..
T Consensus 299 ~--~DlVlIDt~ 308 (424)
T PRK05703 299 D--CDVILIDTA 308 (424)
T ss_pred C--CCEEEEeCC
Confidence 2 467888866
No 268
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.0034 Score=53.53 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=74.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcc----cC-------C---CeEEEEEecCC------CCH---------------
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMED----KL-------F---DKVVMAEVTQT------PDY--------------- 148 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~-------f---~~~~wv~~~~~------~~~--------------- 148 (309)
-.+++|+|+.|.|||||.+.+..-.... .. + ..+.||.=... .++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 3799999999999999999998744311 00 1 23555532110 011
Q ss_pred -------HHHHHHHHHHhCCCCCC-----CCC-HHHHHHHHHHHHhcCCeEEEEEeCCCCccC------------CCCCC
Q 043850 149 -------RKIEDQFAFDLGMKLDL-----NDS-TLERTDGLRKRLNKEMRVLIILDNIWTKLE------------KDDQE 203 (309)
Q Consensus 149 -------~~~~~~i~~~l~~~~~~-----~~~-~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~------------~~~~~ 203 (309)
.+...+.++..+...-. ..+ -+.....+.+.|..+ +=||+||.--...+ .....
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~-p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQN-PDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccC-CCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 13444555555543211 122 233444566677775 79999999866655 22223
Q ss_pred CcEEEEeeCCccccccccCCCceEecC
Q 043850 204 RCTIVLISRSRDLLCNDMNSQKDFWID 230 (309)
Q Consensus 204 gs~iliTtR~~~v~~~~~~~~~~~~l~ 230 (309)
|+.||++|.+-.... -..++++.+.
T Consensus 189 g~tIl~vtHDL~~v~--~~~D~vi~Ln 213 (254)
T COG1121 189 GKTVLMVTHDLGLVM--AYFDRVICLN 213 (254)
T ss_pred CCEEEEEeCCcHHhH--hhCCEEEEEc
Confidence 899999999986532 2355666666
No 269
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.075 Score=48.71 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+-..++|++|.|||++..++++...
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC
Confidence 5578999999999999999998765
No 270
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.06 E-value=0.0027 Score=50.10 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=22.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
+|.|+|.+|+||||||+.+......
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999987753
No 271
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.06 E-value=0.0033 Score=54.59 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=61.1
Q ss_pred cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-------CCCHHHHH
Q 043850 101 DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-------NDSTLERT 173 (309)
Q Consensus 101 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~ 173 (309)
......++|+|..|+|||||.+.++..... ..+.+++.-..-... +-..++......-+.. ..+.....
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccccchHH
Confidence 344578999999999999999999877653 233444421111000 1112333222111110 00101112
Q ss_pred HHHHHHHhcCCeEEEEEeCCCCccC-----CCCCCCcEEEEeeCCccc
Q 043850 174 DGLRKRLNKEMRVLIILDNIWTKLE-----KDDQERCTIVLISRSRDL 216 (309)
Q Consensus 174 ~~l~~~L~~~~r~LlVlDdv~~~~~-----~~~~~gs~iliTtR~~~v 216 (309)
..+...+....+-++++|.+..... .....|..+|+||....+
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHH
Confidence 2344444433478999999866554 222357889999998765
No 272
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.05 E-value=0.0056 Score=53.39 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=30.2
Q ss_pred HHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 95 VMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 95 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
..+.+...+..+|.|.|.+|+|||||+..+.+.....
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~ 131 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS 131 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 3344455678999999999999999999999887654
No 273
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.05 E-value=0.0044 Score=52.92 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=60.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcccC----------CCeEEEEEecCCC-CHHHHHHHHHHHhCCCCCC---------
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMEDKL----------FDKVVMAEVTQTP-DYRKIEDQFAFDLGMKLDL--------- 165 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~~~----------f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~--------- 165 (309)
+..|+|++|+|||+||.+++.....-.. -..+++++...+. .+..-+..+...++.....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 5678999999999999999876542111 1235666655443 2344444555444211000
Q ss_pred -------C---CCHHHHHHHHHHHHhcCCeEEEEEeCCCCc-----cC-------------CCCCCCcEEEEeeCCcc
Q 043850 166 -------N---DSTLERTDGLRKRLNKEMRVLIILDNIWTK-----LE-------------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 166 -------~---~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~-----~~-------------~~~~~gs~iliTtR~~~ 215 (309)
. .........+.+.+...+.-+||+|-+... .+ .....|+.||+++....
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 0 011223344444443334689999976431 11 22345788888888764
No 274
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0042 Score=51.79 Aligned_cols=78 Identities=19% Similarity=0.152 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCccC------------CCCCCCcEEEEeeCCccccccccCCCceEecC-CCCCCC
Q 043850 170 LERTDGLRKRLNKEMRVLIILDNIWTKLE------------KDDQERCTIVLISRSRDLLCNDMNSQKDFWID-DSTRIS 236 (309)
Q Consensus 170 ~~~~~~l~~~L~~~~r~LlVlDdv~~~~~------------~~~~~gs~iliTtR~~~v~~~~~~~~~~~~l~-~~~~~~ 236 (309)
+.....+.+.+.-+ +-|.|||..++..+ .....++-+|+.|....++. ....+.+|-+- +..-..
T Consensus 149 EkKR~EilQ~~~le-Pkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~-~i~pD~vhvl~~GrIv~s 226 (251)
T COG0396 149 EKKRNEILQLLLLE-PKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLD-YIKPDKVHVLYDGRIVKS 226 (251)
T ss_pred hHHHHHHHHHHhcC-CCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHh-hcCCCEEEEEECCEEEec
Confidence 34455566666554 78999999999887 23344666777788877765 34455555554 332223
Q ss_pred CCcHHHHHHHHHh
Q 043850 237 AYQPTEHEIVERR 249 (309)
Q Consensus 237 ~~~~~~~~i~~~c 249 (309)
...+++.++-++|
T Consensus 227 G~~el~~~le~~g 239 (251)
T COG0396 227 GDPELAEELEEKG 239 (251)
T ss_pred CCHHHHHHHHHhc
Confidence 3336666666555
No 275
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.021 Score=48.28 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=39.1
Q ss_pred ccchHHHHHHHHHHhh-------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 043850 85 FDSRKEIFQVVMESLK-------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 85 ~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
+-|-+..+++|.+.++ -.+++-+.++|++|.|||-||+.|+++ ..+.|+.+|.
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsg 214 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSG 214 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEech
Confidence 3456777777766652 135778999999999999999999964 3455677765
No 276
>PRK07667 uridine kinase; Provisional
Probab=97.04 E-value=0.0012 Score=54.59 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=29.0
Q ss_pred HHHHHHhh--cCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 93 QVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 93 ~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
+.|.+.+. +....+|+|.|.+|+||||+|..+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444443 234579999999999999999999987754
No 277
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.04 E-value=0.0084 Score=55.31 Aligned_cols=29 Identities=34% Similarity=0.405 Sum_probs=24.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.+.+|.++|..|+||||++..++......
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999998876543
No 278
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.0027 Score=51.24 Aligned_cols=107 Identities=15% Similarity=0.186 Sum_probs=58.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC--CCHHHHHHHHHHHhCCCCCC----C-------CC-
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT--PDYRKIEDQFAFDLGMKLDL----N-------DS- 168 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~----~-------~~- 168 (309)
.-.+++|+|..|.|||||.+.++..... ..+.+++.-... ..... ....++.-... . .+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS~ 99 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP---TSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILSG 99 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhCH
Confidence 4579999999999999999999886543 234343322110 01111 11111110000 0 11
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCccC-----------CCCCCCcEEEEeeCCcccc
Q 043850 169 TLERTDGLRKRLNKEMRVLIILDNIWTKLE-----------KDDQERCTIVLISRSRDLL 217 (309)
Q Consensus 169 ~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-----------~~~~~gs~iliTtR~~~v~ 217 (309)
.+...-.+...+..+ +-+++||+.....+ .....+..||++|.+....
T Consensus 100 G~~~rl~la~al~~~-p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 100 GQRQRIAIARALLRD-PPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 111222344455554 68999999877766 1112356788999888654
No 279
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.03 E-value=0.0031 Score=59.64 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=65.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCC-CeEEEEEecCCCCHHHHHHHHHHHhCCCCC-----------------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLF-DKVVMAEVTQTPDYRKIEDQFAFDLGMKLD----------------- 164 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------------- 164 (309)
.-+++.|.|.+|+|||+||.+++..--.+ + +.++||+..+ +..++.+.+ ..++....
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~--~ge~~lyvs~eE--~~~~l~~~~-~~~G~~~~~~~~~g~l~~~~~~~~~ 94 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH--FDEPGVFVTFEE--SPQDIIKNA-RSFGWDLQKLVDEGKLFILDASPDP 94 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEec--CHHHHHHHH-HHcCCCHHHHhhcCceEEEecCchh
Confidence 45899999999999999999987653222 3 4678888764 334443332 33332111
Q ss_pred ------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc----C-------------CCCCCCcEEEEeeCCc
Q 043850 165 ------LNDSTLERTDGLRKRLNKEMRVLIILDNIWTKL----E-------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 165 ------~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~----~-------------~~~~~gs~iliTtR~~ 214 (309)
...+.......+...+.+.++-.+|+|.+.... . .....|+.+|+||...
T Consensus 95 ~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~g~TvLLtsh~~ 167 (484)
T TIGR02655 95 EGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVTTVMTTERI 167 (484)
T ss_pred ccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHHCCCEEEEEecCc
Confidence 012345566666677765556778999543211 1 1234578888888754
No 280
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0093 Score=51.48 Aligned_cols=51 Identities=29% Similarity=0.317 Sum_probs=41.0
Q ss_pred CcccccchHHHHHHHHHHhhc-------------CCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 81 DYEIFDSRKEIFQVVMESLKD-------------DKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.+.++-|-+..+++|.+..+- ..++-|.++|.+|.|||-||++|+|+....
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT 246 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT 246 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh
Confidence 345667899999999888631 246778899999999999999999987654
No 281
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.01 E-value=0.0096 Score=51.79 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=35.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAF 157 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 157 (309)
-.++.|.|.+|+|||+++.+++...... +=..++|+++... ..++...+..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~~--~~~~~~r~~~ 80 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEEP--VVRTARRLLG 80 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEcccC--HHHHHHHHHH
Confidence 3688999999999999999998775433 1246788887653 3444444433
No 282
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.01 E-value=0.0019 Score=60.39 Aligned_cols=83 Identities=27% Similarity=0.291 Sum_probs=52.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----NDSTLERTDGLRK 178 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 178 (309)
-.++.|.|.+|+|||||+.+++...... -..++|++..+. ...+.. -++.++..... ..+.+ .+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~----~i~~ 150 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLE----AILA 150 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHH----HHHH
Confidence 4689999999999999999998876532 246788876543 333322 24556543221 12233 3444
Q ss_pred HHhcCCeEEEEEeCCCC
Q 043850 179 RLNKEMRVLIILDNIWT 195 (309)
Q Consensus 179 ~L~~~~r~LlVlDdv~~ 195 (309)
.+...+.-++|+|.+..
T Consensus 151 ~i~~~~~~lVVIDSIq~ 167 (446)
T PRK11823 151 TIEEEKPDLVVIDSIQT 167 (446)
T ss_pred HHHhhCCCEEEEechhh
Confidence 44443467899999853
No 283
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0019 Score=61.90 Aligned_cols=100 Identities=22% Similarity=0.266 Sum_probs=63.3
Q ss_pred ccccchHHHHHHHHHHhh------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHH
Q 043850 83 EIFDSRKEIFQVVMESLK------DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFA 156 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 156 (309)
++.+|.++..+++++.+. +-+-+++..+|++|+|||++|+.++.....+ | +-++++.-.+..++-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIk---- 481 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIK---- 481 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhc----
Confidence 467899999999999983 2356899999999999999999999887655 3 234555554444321
Q ss_pred HHhCCCCCC-CCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 043850 157 FDLGMKLDL-NDSTLERTDGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 157 ~~l~~~~~~-~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
|..... ..-+..+++.|+..- .. +-|+.||.|+..
T Consensus 482 ---GHRRTYVGAMPGkiIq~LK~v~-t~-NPliLiDEvDKl 517 (906)
T KOG2004|consen 482 ---GHRRTYVGAMPGKIIQCLKKVK-TE-NPLILIDEVDKL 517 (906)
T ss_pred ---ccceeeeccCChHHHHHHHhhC-CC-CceEEeehhhhh
Confidence 111111 011123333333332 22 468888888654
No 284
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.01 E-value=0.0012 Score=55.78 Aligned_cols=152 Identities=15% Similarity=0.138 Sum_probs=77.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLN---DSTLERTDGLRKR 179 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~ 179 (309)
+.+++.|.|+.|.||||+.+.+....-. +..-.+|.... ........++..++...... .........+...
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~l---a~~g~~vpa~~--~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLM---AQIGCFVPCDS--ADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHH---HHhCCCcCccc--EEEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 4579999999999999999987643211 00001221111 00011222333333221110 1112222233333
Q ss_pred H--hcCCeEEEEEeCC---CCccC-----------CCCCCCcEEEEeeCCcccccccc--CCC-----------------
Q 043850 180 L--NKEMRVLIILDNI---WTKLE-----------KDDQERCTIVLISRSRDLLCNDM--NSQ----------------- 224 (309)
Q Consensus 180 L--~~~~r~LlVlDdv---~~~~~-----------~~~~~gs~iliTtR~~~v~~~~~--~~~----------------- 224 (309)
+ ..+ +-|++||.. .+..+ .....++.+|+||....+...+. ...
T Consensus 104 l~~~~~-~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~~ 182 (222)
T cd03285 104 LKSATE-NSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTLT 182 (222)
T ss_pred HHhCCC-CeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcEe
Confidence 3 233 789999999 44343 12235788999999765432110 000
Q ss_pred ceEecCCCCCCCCCcHHHHHHHHHhCCCchHHHHHHHHhc
Q 043850 225 KDFWIDDSTRISAYQPTEHEIVERRGGLPVAPSTIANALK 264 (309)
Q Consensus 225 ~~~~l~~~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l~ 264 (309)
..|++..... ....+-++++.+ |+|-.+..-|..+.
T Consensus 183 ~~Y~l~~G~~---~~s~a~~~a~~~-g~p~~vi~~A~~~~ 218 (222)
T cd03285 183 MLYKVEKGAC---DQSFGIHVAELA-NFPKEVIEMAKQKA 218 (222)
T ss_pred EEEEEeeCCC---CCcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 1222221111 235677777776 89988888777665
No 285
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=97.01 E-value=0.0062 Score=52.66 Aligned_cols=95 Identities=23% Similarity=0.199 Sum_probs=60.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh--cccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCCCC------CCCCHH----
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM--EDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGMKLD------LNDSTL---- 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~--~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~~~~---- 170 (309)
-+-++|.|-+|+|||+|+..++++.. .+.+-+.++++-+++.. ...+++.++...=..... .+....
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 46789999999999999999988764 12234678888888765 466666666554211110 011111
Q ss_pred --HHHHHHHHHHhc--CCeEEEEEeCCCCccC
Q 043850 171 --ERTDGLRKRLNK--EMRVLIILDNIWTKLE 198 (309)
Q Consensus 171 --~~~~~l~~~L~~--~~r~LlVlDdv~~~~~ 198 (309)
...-.+.+++.. ++++|+++||+....+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~ 180 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNYAE 180 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHHHH
Confidence 123345566643 3689999999965443
No 286
>PRK06762 hypothetical protein; Provisional
Probab=97.00 E-value=0.0007 Score=54.31 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998776
No 287
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.00 E-value=0.00076 Score=56.38 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=24.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.+..+|+|.|.+|+|||||++.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 288
>PTZ00494 tuzin-like protein; Provisional
Probab=96.99 E-value=0.04 Score=50.70 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=60.4
Q ss_pred CCCcccccchHHHHHHHHHHhh---cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHH
Q 043850 79 VKDYEIFDSRKEIFQVVMESLK---DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQF 155 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 155 (309)
+.....++.|+++-..+.+.|. ...++++++.|.-|.||++|.+........- .++|++... ++-++.+
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~p-----aV~VDVRg~---EDtLrsV 438 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVA-----LVHVDVGGT---EDTLRSV 438 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCC-----eEEEEecCC---cchHHHH
Confidence 3456678999988777777664 3468999999999999999999988766543 577888765 4567788
Q ss_pred HHHhCCCCCC
Q 043850 156 AFDLGMKLDL 165 (309)
Q Consensus 156 ~~~l~~~~~~ 165 (309)
.+.++.+.-+
T Consensus 439 VKALgV~nve 448 (664)
T PTZ00494 439 VRALGVSNVE 448 (664)
T ss_pred HHHhCCCChh
Confidence 8888877543
No 289
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.99 E-value=0.0033 Score=59.50 Aligned_cols=108 Identities=15% Similarity=0.195 Sum_probs=70.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------------CCC
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD---------------LND 167 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------------~~~ 167 (309)
.-+++.|.|.+|+|||||+.+++.....+ =+.+++++..+ +..++...+ +.+|.+.. ...
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 45899999999999999999998876543 35667776554 444544443 44443221 113
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------CCCCCCcEEEEeeCCcc
Q 043850 168 STLERTDGLRKRLNKEMRVLIILDNIWTKLE----------------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 168 ~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~----------------~~~~~gs~iliTtR~~~ 215 (309)
+.++....+.+.+...+.-++|+|.+..... .....|..+++|.-...
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~~~t~~~~~ 400 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNTSDQ 400 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeEEEeecccc
Confidence 4467778888888665567899999864311 23456666777755443
No 290
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.0018 Score=52.56 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=21.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.|.|.|.+|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999854
No 291
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.98 E-value=0.0034 Score=50.82 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
...+|.|+|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999988754
No 292
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.98 E-value=0.0046 Score=51.13 Aligned_cols=112 Identities=15% Similarity=0.204 Sum_probs=69.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEec-------------------CCCC----------------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT-------------------QTPD---------------- 147 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~~---------------- 147 (309)
.-.+++|+|++|+|||||.+.+..-.... .+.+|+.-. +.++
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~ 103 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPV 103 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhH
Confidence 34799999999999999999886544322 355555321 1111
Q ss_pred ---------HHHHHHHHHHHhCCCCCC------CCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC------------CC
Q 043850 148 ---------YRKIEDQFAFDLGMKLDL------NDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE------------KD 200 (309)
Q Consensus 148 ---------~~~~~~~i~~~l~~~~~~------~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~------------~~ 200 (309)
.++...+++...|..... -..-++..-.+.+.|.=+ +-++.||..-+..+ ..
T Consensus 104 ~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~-P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 104 KVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMD-PKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCC-CCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 123445555555543221 122233444556666654 68899999988887 33
Q ss_pred CCCCcEEEEeeCCccccc
Q 043850 201 DQERCTIVLISRSRDLLC 218 (309)
Q Consensus 201 ~~~gs~iliTtR~~~v~~ 218 (309)
...|-..|+.|..-.+|.
T Consensus 183 A~eGmTMivVTHEM~FAr 200 (240)
T COG1126 183 AEEGMTMIIVTHEMGFAR 200 (240)
T ss_pred HHcCCeEEEEechhHHHH
Confidence 445677888888876654
No 293
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.98 E-value=0.0013 Score=55.25 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.+.+.|+|+.|.|||||.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 294
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.98 E-value=0.0075 Score=48.85 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=27.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEE
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMA 140 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 140 (309)
.-..+.|+|++|.|||||.+.+|...+.. .+.+|+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~ 61 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILV 61 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEE
Confidence 34689999999999999999999887643 344555
No 295
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.98 E-value=0.00074 Score=45.71 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+|.|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 296
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.013 Score=49.74 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=40.2
Q ss_pred CcccccchHHHHHHHHHHhh-------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 81 DYEIFDSRKEIFQVVMESLK-------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.+.++-|-+..+++|++.+. -..++-+.++|++|.|||-+|+..+.+....
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aT 232 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNAT 232 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccch
Confidence 34567789999999998872 1246778999999999999999988765543
No 297
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.011 Score=58.26 Aligned_cols=88 Identities=18% Similarity=0.222 Sum_probs=50.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ-TPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNK 182 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 182 (309)
..+|+++|+.|+||||++.+++...........+..++... .....+-+....+.++.+.....+..++...+. .+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-HhcC
Confidence 47999999999999999999987764331123455555432 112445556666666665543334444433332 2332
Q ss_pred CCeEEEEEeCCC
Q 043850 183 EMRVLIILDNIW 194 (309)
Q Consensus 183 ~~r~LlVlDdv~ 194 (309)
. =+|++|-.-
T Consensus 264 ~--D~VLIDTAG 273 (767)
T PRK14723 264 K--HLVLIDTVG 273 (767)
T ss_pred C--CEEEEeCCC
Confidence 2 355556553
No 298
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0077 Score=59.93 Aligned_cols=103 Identities=16% Similarity=0.203 Sum_probs=64.9
Q ss_pred ccchHHHHHHHHHHhhc------C--CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHH
Q 043850 85 FDSRKEIFQVVMESLKD------D--KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFA 156 (309)
Q Consensus 85 ~~gR~~~~~~l~~~L~~------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 156 (309)
++|-++.+..+.+.+.. + ....+.+.|+.|+|||-||+.++...-.. .+..+-++.++... +.
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs--e~~~IriDmse~~e-------vs 634 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS--EENFIRLDMSEFQE-------VS 634 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC--ccceEEechhhhhh-------hh
Confidence 45556666666666521 1 35677889999999999999999876443 44455555443221 33
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 157 FDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
+.++.++.. -..+....|-+.++.+.-.+|+||||+..+.
T Consensus 635 kligsp~gy--vG~e~gg~LteavrrrP~sVVLfdeIEkAh~ 674 (898)
T KOG1051|consen 635 KLIGSPPGY--VGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP 674 (898)
T ss_pred hccCCCccc--ccchhHHHHHHHHhcCCceEEEEechhhcCH
Confidence 334444322 1223344677778776567888999987665
No 299
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.94 E-value=0.003 Score=59.12 Aligned_cols=83 Identities=24% Similarity=0.285 Sum_probs=51.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----NDSTLERTDGLRK 178 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 178 (309)
-.++.|.|.+|+|||||+.+++...... -..++|++..+. ..++.. -+..++..... ..+. ..+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~----~~I~~ 164 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNW----EQICA 164 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCH----HHHHH
Confidence 4789999999999999999998776543 235788876543 333322 23344433221 1222 34444
Q ss_pred HHhcCCeEEEEEeCCCC
Q 043850 179 RLNKEMRVLIILDNIWT 195 (309)
Q Consensus 179 ~L~~~~r~LlVlDdv~~ 195 (309)
.+...+.-++|+|.+..
T Consensus 165 ~i~~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 165 NIEEENPQACVIDSIQT 181 (454)
T ss_pred HHHhcCCcEEEEecchh
Confidence 44444467899999854
No 300
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.042 Score=48.05 Aligned_cols=145 Identities=10% Similarity=0.033 Sum_probs=75.4
Q ss_pred HHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhcc------------cCCCeEEEEEecCC--CCHHHHHHHH
Q 043850 91 IFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVMED------------KLFDKVVMAEVTQT--PDYRKIEDQF 155 (309)
Q Consensus 91 ~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------~~f~~~~wv~~~~~--~~~~~~~~~i 155 (309)
.-++|...+..+. .....++|+.|+||+++|..++...-.. .|.|..+....... ..++++ +++
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqi-R~l 83 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETP-RAI 83 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHH-HHH
Confidence 3456777776655 4677899999999999999998776432 12222211111110 111111 222
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------CCCCCCcEEEEeeCCc-cccccccCCC
Q 043850 156 AFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE----------KDDQERCTIVLISRSR-DLLCNDMNSQ 224 (309)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~----------~~~~~gs~iliTtR~~-~v~~~~~~~~ 224 (309)
.+.+...+. .+ +.-++|+|+++.... .....++.+|++|.+. .+.....+..
T Consensus 84 ~~~~~~~p~----------------e~-~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRc 146 (290)
T PRK05917 84 KKQIWIHPY----------------ES-PYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS 146 (290)
T ss_pred HHHHhhCcc----------------CC-CceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcc
Confidence 222222111 12 246888899877665 3334455566666654 3322222223
Q ss_pred ceEecCCCCCCCCCcHHHHHHHHHhCCCc
Q 043850 225 KDFWIDDSTRISAYQPTEHEIVERRGGLP 253 (309)
Q Consensus 225 ~~~~l~~~~~~~~~~~~~~~i~~~c~GlP 253 (309)
..+.+..........+.+..++...+|.+
T Consensus 147 q~~~~~~~~~~~i~~~~~~~l~~~~~g~~ 175 (290)
T PRK05917 147 LSIHIPMEEKTLVSKEDIAYLIGYAQGKE 175 (290)
T ss_pred eEEEccchhccCCCHHHHHHHHHHhCCCh
Confidence 34444422221233456677888888855
No 301
>PTZ00301 uridine kinase; Provisional
Probab=96.93 E-value=0.0009 Score=55.90 Aligned_cols=26 Identities=35% Similarity=0.659 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+|+|.|.+|+||||||+.+.....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999987764
No 302
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.92 E-value=0.015 Score=52.67 Aligned_cols=101 Identities=26% Similarity=0.265 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhcC----CCcEEEEEeCCCCcHHH-HHHHHHHHhhcccCCCeEEEEEecCC-CCHHHHHHHHHHHhCCCC
Q 043850 90 EIFQVVMESLKDD----KLKVIGVYGMGGVGKTT-LVKQVAMKVMEDKLFDKVVMAEVTQT-PDYRKIEDQFAFDLGMKL 163 (309)
Q Consensus 90 ~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 163 (309)
+.+..+..++.++ +.++|.++|+.|+|||| ||+..+...... .=..+..++.... -...+-++..++-++.+.
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~-~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~ 263 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLK-KKKKVAIITTDTYRIGAVEQLKTYADIMGVPL 263 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhc-cCcceEEEEeccchhhHHHHHHHHHHHhCCce
Confidence 3344444444333 37999999999999996 665555544121 1345666665432 234555666677778877
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEEEeCCC
Q 043850 164 DLNDSTLERTDGLRKRLNKEMRVLIILDNIW 194 (309)
Q Consensus 164 ~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~ 194 (309)
....++.++...+... .. +=+|.+|-+-
T Consensus 264 ~vv~~~~el~~ai~~l-~~--~d~ILVDTaG 291 (407)
T COG1419 264 EVVYSPKELAEAIEAL-RD--CDVILVDTAG 291 (407)
T ss_pred EEecCHHHHHHHHHHh-hc--CCEEEEeCCC
Confidence 6656666666555443 33 2355556653
No 303
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.92 E-value=0.0019 Score=51.05 Aligned_cols=36 Identities=31% Similarity=0.363 Sum_probs=29.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEE
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAE 141 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 141 (309)
..+|-|.|.+|+||||||+.+....... -..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 3588999999999999999999998876 45566665
No 304
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.011 Score=57.35 Aligned_cols=95 Identities=21% Similarity=0.295 Sum_probs=61.0
Q ss_pred ccccchHHHHHHHHHHhhc---------C---CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHH
Q 043850 83 EIFDSRKEIFQVVMESLKD---------D---KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRK 150 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~---------~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 150 (309)
.++-|-++...+|.+-+.- . ..+=|.++|++|.|||-||++|+....-. |++|... +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~-------FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN-------FLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee-------EEeecCH----H
Confidence 3566888888888877631 1 24568899999999999999999766543 4555432 1
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 151 IEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 151 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
++..- +| ++ ++-...+.+.-+.-.+|+|.||.+++...
T Consensus 741 LLNMY---VG------qS-E~NVR~VFerAR~A~PCVIFFDELDSlAP 778 (953)
T KOG0736|consen 741 LLNMY---VG------QS-EENVREVFERARSAAPCVIFFDELDSLAP 778 (953)
T ss_pred HHHHH---hc------ch-HHHHHHHHHHhhccCCeEEEeccccccCc
Confidence 11111 11 11 22334444444454689999999988654
No 305
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.90 E-value=0.0056 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~ 126 (309)
.+++|.|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 306
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.90 E-value=0.0026 Score=61.66 Aligned_cols=78 Identities=13% Similarity=0.160 Sum_probs=57.4
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 043850 80 KDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDL 159 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 159 (309)
.....++|.++.++.|...+... +.+.++|.+|+||||+|+.+++..... +++..+|..- ...+...+++.++..+
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~~-~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPKE-ELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcChH-hHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 34567899999998888877654 478999999999999999999876433 4577778654 3345666676666655
Q ss_pred CC
Q 043850 160 GM 161 (309)
Q Consensus 160 ~~ 161 (309)
|.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 43
No 307
>PRK03839 putative kinase; Provisional
Probab=96.89 E-value=0.00093 Score=54.41 Aligned_cols=25 Identities=44% Similarity=0.553 Sum_probs=22.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.|.|.|++|+||||+++.+++....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999988753
No 308
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.89 E-value=0.001 Score=55.55 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+...+|+|+|++|+|||||++.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999988654
No 309
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.88 E-value=0.0045 Score=50.05 Aligned_cols=108 Identities=23% Similarity=0.215 Sum_probs=58.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----C--------CCH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----N--------DST 169 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~--------~~~ 169 (309)
.-.+++|+|..|+|||||++.++..... ..+.++++-....... ..+...++.-... . .+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKP---DSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 3468999999999999999999876432 2344444221100000 0111111100000 0 111
Q ss_pred -HHHHHHHHHHHhcCCeEEEEEeCCCCccC------------CCCCCCcEEEEeeCCcccc
Q 043850 170 -LERTDGLRKRLNKEMRVLIILDNIWTKLE------------KDDQERCTIVLISRSRDLL 217 (309)
Q Consensus 170 -~~~~~~l~~~L~~~~r~LlVlDdv~~~~~------------~~~~~gs~iliTtR~~~v~ 217 (309)
+...-.+...|..+ +-++++|+.....+ .....|..+|++|.+....
T Consensus 99 G~~qrv~laral~~~-p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~ 158 (173)
T cd03230 99 GMKQRLALAQALLHD-PELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEA 158 (173)
T ss_pred HHHHHHHHHHHHHcC-CCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Confidence 12223344555554 68999999977766 1122367788888887643
No 310
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.87 E-value=0.0011 Score=54.28 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=23.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+.++|.|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 311
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.87 E-value=0.016 Score=49.44 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=30.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
-.++.|.|.+|+|||+++.+++.+.-.+. =..++|+++..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~ 52 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM 52 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC
Confidence 36899999999999999999887765431 23567777554
No 312
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.0028 Score=50.29 Aligned_cols=107 Identities=17% Similarity=0.269 Sum_probs=60.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKE 183 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 183 (309)
-.+++|+|..|.|||||++.++..... ..+.+++........ ........++.....+.. +...-.+...+...
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~~~~~~--~~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~~ 98 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGKDIAKL--PLEELRRRIGYVPQLSGG-QRQRVALARALLLN 98 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCEEcccC--CHHHHHhceEEEeeCCHH-HHHHHHHHHHHhcC
Confidence 379999999999999999999876542 345555543211110 001112222221111112 22233344445454
Q ss_pred CeEEEEEeCCCCccC------------CCCCCCcEEEEeeCCcccc
Q 043850 184 MRVLIILDNIWTKLE------------KDDQERCTIVLISRSRDLL 217 (309)
Q Consensus 184 ~r~LlVlDdv~~~~~------------~~~~~gs~iliTtR~~~v~ 217 (309)
+-+++||+.....+ .....+..++++|......
T Consensus 99 -~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 143 (157)
T cd00267 99 -PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELA 143 (157)
T ss_pred -CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 68999999977666 1112256788888887654
No 313
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.87 E-value=0.0033 Score=53.49 Aligned_cols=59 Identities=20% Similarity=0.243 Sum_probs=38.4
Q ss_pred HHHHHHHHhh--cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHH
Q 043850 91 IFQVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYR 149 (309)
Q Consensus 91 ~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 149 (309)
+..+|++.+. ..+..+|+|.|++|+|||||...+......+.+=-.++=|+-|+.++--
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGG 74 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGG 74 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC--
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCC
Confidence 3445555553 3467899999999999999999999988765444466677666665543
No 314
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0057 Score=53.18 Aligned_cols=94 Identities=20% Similarity=0.208 Sum_probs=57.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNK 182 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 182 (309)
.+..++|||++|.|||-||+.|+...... |- .+..+.-.+ ..+ -....++.....+.+.
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~n--fl---~v~ss~lv~---------kyi-------GEsaRlIRemf~yA~~ 223 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVN--FL---KVVSSALVD---------KYI-------GESARLIRDMFRYARE 223 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCc--eE---EeeHhhhhh---------hhc-------ccHHHHHHHHHHHHhh
Confidence 46789999999999999999999887765 31 111110000 001 1112233333333344
Q ss_pred CCeEEEEEeCCCCccC--------------------------CCCCCCcEEEEeeCCcccc
Q 043850 183 EMRVLIILDNIWTKLE--------------------------KDDQERCTIVLISRSRDLL 217 (309)
Q Consensus 183 ~~r~LlVlDdv~~~~~--------------------------~~~~~gs~iliTtR~~~v~ 217 (309)
.-+|.|.+|+++.... .......++|.||-..+..
T Consensus 224 ~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 224 VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 4468888888865432 3445677899999888654
No 315
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.84 E-value=0.0016 Score=55.53 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=42.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEE-------ecCCCCHHHH--HHHHHHHhCCCCCC
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAE-------VTQTPDYRKI--EDQFAFDLGMKLDL 165 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-------~~~~~~~~~~--~~~i~~~l~~~~~~ 165 (309)
.+.+|.++||+|+||||+.+.++.+...+..-.+++-.+ ..-+.++.+. .++.+++.+..++.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 467888999999999999999999888764434444332 1123344433 46777777665554
No 316
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.014 Score=53.81 Aligned_cols=62 Identities=23% Similarity=0.218 Sum_probs=36.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC-CCCHHHHHHHHHHHhCCCCC
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ-TPDYRKIEDQFAFDLGMKLD 164 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~ 164 (309)
...+++++|..|+||||++..++...........+..+.... .....+-+..+.+.++.+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~ 252 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR 252 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee
Confidence 357999999999999999998887643221223344444322 11223334444555555443
No 317
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.83 E-value=0.0054 Score=48.04 Aligned_cols=96 Identities=27% Similarity=0.317 Sum_probs=55.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNK 182 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 182 (309)
.-.+++|.|..|.|||||++.+...... ..+.+|++-. ..++.-..- ...+...-.+...+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~-------------~~i~~~~~l-S~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGST-------------VKIGYFEQL-SGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCe-------------EEEEEEccC-CHHHHHHHHHHHHHhc
Confidence 3478999999999999999999876542 2344444210 000000001 1112222334444545
Q ss_pred CCeEEEEEeCCCCccC----------CCCCCCcEEEEeeCCcccc
Q 043850 183 EMRVLIILDNIWTKLE----------KDDQERCTIVLISRSRDLL 217 (309)
Q Consensus 183 ~~r~LlVlDdv~~~~~----------~~~~~gs~iliTtR~~~v~ 217 (309)
+ +-++++|+.....+ .... +..||++|.+....
T Consensus 88 ~-p~illlDEP~~~LD~~~~~~l~~~l~~~-~~til~~th~~~~~ 130 (144)
T cd03221 88 N-PNLLLLDEPTNHLDLESIEALEEALKEY-PGTVILVSHDRYFL 130 (144)
T ss_pred C-CCEEEEeCCccCCCHHHHHHHHHHHHHc-CCEEEEEECCHHHH
Confidence 4 67899999877666 1111 34688888877543
No 318
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.83 E-value=0.004 Score=57.41 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=35.5
Q ss_pred ccccchHHHHHHHHHHhhc-------C---------CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 83 EIFDSRKEIFQVVMESLKD-------D---------KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~-------~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..++|.+..++.|...+.+ . ....+.++|++|+|||+||+.++....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3578999888877555411 0 135689999999999999999987654
No 319
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.83 E-value=0.0045 Score=59.03 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=66.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC------------------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD------------------ 164 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------ 164 (309)
.-+++.|.|.+|+|||+|+.+++.....+ +=..++|++.... ..++...+.. ++.+..
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~-~ge~~lyis~ee~--~~~i~~~~~~-~g~d~~~~~~~g~l~~~~~~~~~~ 105 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKR-FDEPGVFVTFEES--PEDIIRNVAS-FGWDLQKLIDEGKLFILDASPDPS 105 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCEEEEEccCC--HHHHHHHHHH-cCCCHHHHhhCCeEEEEecCcccc
Confidence 35899999999999999999987655433 1246788887663 3344443322 222100
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-----------------CCCCCCcEEEEeeCCc
Q 043850 165 -----LNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE-----------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 165 -----~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-----------------~~~~~gs~iliTtR~~ 214 (309)
...+.+.....+.+.+...+.-.+|+|.+..... .....|+.+|+|+...
T Consensus 106 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~~g~TvLlt~~~~ 177 (509)
T PRK09302 106 EQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQKGVTAVITGERG 177 (509)
T ss_pred cccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHhCCCEEEEEECCc
Confidence 0113345566666666554456799999864221 1244577788888643
No 320
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.82 E-value=0.003 Score=54.64 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=45.5
Q ss_pred HHHHHHhh--cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHH
Q 043850 93 QVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIE 152 (309)
Q Consensus 93 ~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 152 (309)
.+|+..+. ..+..+|+|.|.+|+|||||.-.+......+.|=-.++=|+-|+.++--.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 45555553 4567899999999999999999999998877665677777777777644443
No 321
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.81 E-value=0.0043 Score=60.18 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=39.4
Q ss_pred CcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 81 DYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
....++|.++.++.+...+... ..+.++|++|+|||++|+.+++.....
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3457889999888888777654 356699999999999999999877654
No 322
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0089 Score=57.48 Aligned_cols=94 Identities=18% Similarity=0.136 Sum_probs=58.1
Q ss_pred cccchHHHHHHHHHHhhc----------C---CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHH
Q 043850 84 IFDSRKEIFQVVMESLKD----------D---KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRK 150 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~~----------~---~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 150 (309)
++-|..+..+.|.+.+.- . ...-|.++|++|+|||-||.+++.....+ ++++..+ +
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----E 736 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----E 736 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----H
Confidence 445665555555555521 1 23458899999999999999998766544 5666543 2
Q ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 151 IEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 151 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
++. +-+|.+ ++....+..+-+.-++|+|.||.+++...
T Consensus 737 lL~---KyIGaS-------Eq~vR~lF~rA~~a~PCiLFFDEfdSiAP 774 (952)
T KOG0735|consen 737 LLS---KYIGAS-------EQNVRDLFERAQSAKPCILFFDEFDSIAP 774 (952)
T ss_pred HHH---HHhccc-------HHHHHHHHHHhhccCCeEEEeccccccCc
Confidence 211 223322 23344455555554689999999987654
No 323
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.81 E-value=0.0041 Score=58.47 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=43.6
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
|....+++|-+.....|.+.+..+. ..-....|+-|+||||+|+-++....-.
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 4456778999999999999997665 3567789999999999999998876543
No 324
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.79 E-value=0.0072 Score=48.67 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=46.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC-C
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKE-M 184 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~-~ 184 (309)
++.|.|.+|+|||++|.+++.. ....++++.-...++. ++...|.+.....+.. ....+....+.+.+... +
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~-w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAH-WRTIETPRDLVSALKELDP 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCC-ceEeecHHHHHHHHHhcCC
Confidence 3679999999999999999765 1345666665555543 3444443322222222 33333344455555321 2
Q ss_pred eEEEEEeCC
Q 043850 185 RVLIILDNI 193 (309)
Q Consensus 185 r~LlVlDdv 193 (309)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 347889987
No 325
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.79 E-value=0.0014 Score=52.70 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=23.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
....|.|+|++|+||||+|+.++....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998864
No 326
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.78 E-value=0.0031 Score=48.45 Aligned_cols=41 Identities=24% Similarity=0.195 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhc--CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 90 EIFQVVMESLKD--DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 90 ~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
++..++.+.|.. ....+|.+.|.-|+|||||++.++.....
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 344455544432 23469999999999999999999988654
No 327
>PRK04040 adenylate kinase; Provisional
Probab=96.78 E-value=0.0014 Score=53.85 Aligned_cols=26 Identities=42% Similarity=0.622 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+|+|+|++|+||||+++.+.....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998774
No 328
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0046 Score=50.27 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-.+++|+|..|+|||||++.++....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347999999999999999999986543
No 329
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0037 Score=52.79 Aligned_cols=112 Identities=19% Similarity=0.224 Sum_probs=65.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhccc----------------------CCCeEEEEEecCCC------------CH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDK----------------------LFDKVVMAEVTQTP------------DY 148 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----------------------~f~~~~wv~~~~~~------------~~ 148 (309)
.--.|+|+|++|+|||||.+.++.-..... .+..--|-++.++- ..
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~ 107 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEA 107 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhH
Confidence 446899999999999999999976543210 01111233333321 12
Q ss_pred HHHHHHHHHHhCCCCCC-------CCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcEEE
Q 043850 149 RKIEDQFAFDLGMKLDL-------NDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQERCTIV 208 (309)
Q Consensus 149 ~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~il 208 (309)
.+...++++..|..... +-.+.+... +.+.|..+ +-+|.||.-....+ .....+..|+
T Consensus 108 ~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVa-iARAL~~~-P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~Tvl 185 (248)
T COG1116 108 RERAKELLELVGLAGFEDKYPHQLSGGMRQRVA-IARALATR-PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185 (248)
T ss_pred HHHHHHHHHHcCCcchhhcCccccChHHHHHHH-HHHHHhcC-CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEE
Confidence 33566666666654322 122333333 44444454 67889999877666 4445556688
Q ss_pred EeeCCccc
Q 043850 209 LISRSRDL 216 (309)
Q Consensus 209 iTtR~~~v 216 (309)
+.|.+-+-
T Consensus 186 lVTHdi~E 193 (248)
T COG1116 186 LVTHDVDE 193 (248)
T ss_pred EEeCCHHH
Confidence 77877643
No 330
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0042 Score=59.06 Aligned_cols=48 Identities=23% Similarity=0.247 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHHHhh-------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 84 IFDSRKEIFQVVMESLK-------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
++-|-++...+|.+... -+.++-|.++|++|+|||++|+.+++.....
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 44456666666554442 1457889999999999999999999987765
No 331
>PLN02165 adenylate isopentenyltransferase
Probab=96.76 E-value=0.0019 Score=57.36 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=25.5
Q ss_pred hcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 100 KDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 100 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+....+|+|+|+.|+|||+||..++....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 445567999999999999999999988754
No 332
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.75 E-value=0.0094 Score=55.49 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=59.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCCCC-----C-CCCHH------
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGMKLD-----L-NDSTL------ 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~-~~~~~------ 170 (309)
-.-++|.|.+|+|||||+..+++..... +-+.++++-+++.. ...+++.++...-..... . +.+..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 4679999999999999999998887754 56788888777654 456666666543221110 0 11111
Q ss_pred HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 043850 171 ERTDGLRKRLNK--EMRVLIILDNIWT 195 (309)
Q Consensus 171 ~~~~~l~~~L~~--~~r~LlVlDdv~~ 195 (309)
...-.+.++++. ++.+||++|++..
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchH
Confidence 223345566632 3589999999944
No 333
>PRK00625 shikimate kinase; Provisional
Probab=96.75 E-value=0.0013 Score=53.17 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.|.|+||+|+||||+++.+++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988765
No 334
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.75 E-value=0.0058 Score=53.09 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
+.|.|+|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999987765
No 335
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.087 Score=47.38 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=27.5
Q ss_pred HHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 93 QVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 93 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
++|... ...-++.+.++|+.|+||+++|..++...-.
T Consensus 11 ~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 11 NRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred HHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 444442 3334578889999999999999999877643
No 336
>PF13479 AAA_24: AAA domain
Probab=96.74 E-value=0.0078 Score=50.49 Aligned_cols=20 Identities=45% Similarity=0.590 Sum_probs=17.9
Q ss_pred cEEEEEeCCCCcHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQV 124 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v 124 (309)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46889999999999999875
No 337
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.74 E-value=0.023 Score=46.03 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=70.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhc-----ccCCCeEEEE-----------------------EecCCCCHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVME-----DKLFDKVVMA-----------------------EVTQTPDYRKIEDQ 154 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~-----~~~f~~~~wv-----------------------~~~~~~~~~~~~~~ 154 (309)
..++..|+|..|+|||||.-.++-...- .+.|..-+-. ....-.++..-+.+
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~~n~~~~~~~s~s~l~~~~k~~~~~k~~~g~FlRAEs~yn~as~~De 115 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIGFFLRAESFYNVASYLDE 115 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhhccccccCCCcCcCcccccccchHHHhHHHhhcCCCCcceEEehhHHHHHHHHHHh
Confidence 5689999999999999999988654321 1112211111 11111122222222
Q ss_pred HHHHhC---CCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC------------CCCCCCcEEEEeeCCcccccc
Q 043850 155 FAFDLG---MKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE------------KDDQERCTIVLISRSRDLLCN 219 (309)
Q Consensus 155 i~~~l~---~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~------------~~~~~gs~iliTtR~~~v~~~ 219 (309)
+...-+ .+......-+.....+.+++.++ -+.|||.-+.... .....|+.||+.|.++-+..
T Consensus 116 ~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~--GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlA- 192 (233)
T COG3910 116 ADGEANYGGRSLHHMSHGESFLAIFHNRFNGQ--GIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLA- 192 (233)
T ss_pred hhhhcccCCcchhhhccchHHHHHHHHHhccC--ceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhee-
Confidence 221111 00111122244566677777663 7889999887665 34456799999999997643
Q ss_pred ccCCCceEecC
Q 043850 220 DMNSQKDFWID 230 (309)
Q Consensus 220 ~~~~~~~~~l~ 230 (309)
.....+|+..
T Consensus 193 -iP~A~I~~~~ 202 (233)
T COG3910 193 -IPGAEIYEIS 202 (233)
T ss_pred -CCCcEEEEEe
Confidence 3455677766
No 338
>PRK14529 adenylate kinase; Provisional
Probab=96.74 E-value=0.0059 Score=51.43 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=45.3
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhhcccCCCe--EEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 043850 107 IGVYGMGGVGKTTLVKQVAMKVMEDKLFDK--VVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEM 184 (309)
Q Consensus 107 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~ 184 (309)
|.|.|++|+||||+|+.++...... |... .+.-.+..........++++..-.. ...+-....+.+.|.+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~l-----vpdei~~~lv~~~l~~~~ 76 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGDL-----VPDDITIPMILETLKQDG 76 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccCc-----chHHHHHHHHHHHHhccC
Confidence 7889999999999999999887643 2221 1111222222333334444432111 122334555666664422
Q ss_pred eEEEEEeCC
Q 043850 185 RVLIILDNI 193 (309)
Q Consensus 185 r~LlVlDdv 193 (309)
..-+|||++
T Consensus 77 ~~g~iLDGf 85 (223)
T PRK14529 77 KNGWLLDGF 85 (223)
T ss_pred CCcEEEeCC
Confidence 345889998
No 339
>PRK05439 pantothenate kinase; Provisional
Probab=96.74 E-value=0.016 Score=51.31 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+-+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999987654
No 340
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.73 E-value=0.0068 Score=55.46 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=38.6
Q ss_pred ccccchHHHHHHHHHHhhcC--------------CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 83 EIFDSRKEIFQVVMESLKDD--------------KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~~--------------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
..++|.++..+.+.-.+... .++-|.++|++|+|||++|+.++......
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 45789988888886655321 24789999999999999999999987653
No 341
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.72 E-value=0.0065 Score=54.45 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=36.7
Q ss_pred ccccchHHHHHHHHHHhhc--CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 83 EIFDSRKEIFQVVMESLKD--DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..++|+...+.++.+.+.. .....|.|.|..|+||+++|+.+....
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 4688998888888887742 334678899999999999999987543
No 342
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.72 E-value=0.0038 Score=48.62 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=28.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
++|.|+|..|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 479999999999999999999998764 455555555544
No 343
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.72 E-value=0.014 Score=51.41 Aligned_cols=124 Identities=17% Similarity=0.206 Sum_probs=70.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhccc----CCC------------eEEEEEecC----CCCH---------------
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDK----LFD------------KVVMAEVTQ----TPDY--------------- 148 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~------------~~~wv~~~~----~~~~--------------- 148 (309)
-.++++.|+.|+|||||.+.+....+... .+. .+.++.-.. ..+.
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~ 110 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK 110 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh
Confidence 46999999999999999999987765310 000 112221111 1111
Q ss_pred ---HHHHHHHHHHhCCCCCC-----CCCH-HHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcE
Q 043850 149 ---RKIEDQFAFDLGMKLDL-----NDST-LERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQERCT 206 (309)
Q Consensus 149 ---~~~~~~i~~~l~~~~~~-----~~~~-~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~ 206 (309)
.+....+++.++..... ..+. ....-.+...|..+ +-++|||+--+..+ .....+..
T Consensus 111 ~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~-P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~t 189 (293)
T COG1131 111 EEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD-PELLILDEPTSGLDPESRREIWELLRELAKEGGVT 189 (293)
T ss_pred hHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC-CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcE
Confidence 23445566666665411 0111 11222334445554 68999999988777 22333367
Q ss_pred EEEeeCCccccccccCCCceEecC
Q 043850 207 IVLISRSRDLLCNDMNSQKDFWID 230 (309)
Q Consensus 207 iliTtR~~~v~~~~~~~~~~~~l~ 230 (309)
||+||....-+.. + +++++-+.
T Consensus 190 vlissH~l~e~~~-~-~d~v~il~ 211 (293)
T COG1131 190 ILLSTHILEEAEE-L-CDRVIILN 211 (293)
T ss_pred EEEeCCcHHHHHH-h-CCEEEEEe
Confidence 9999998865432 2 44555554
No 344
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.021 Score=46.20 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=26.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEE
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMA 140 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 140 (309)
-..+.|.|..|+|||||.+.++--.+.. -..+.|-
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl~p~--~G~v~~~ 62 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLLRPD--AGEVYWQ 62 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHcccCCC--CCeEEec
Confidence 3578899999999999999998766543 2344554
No 345
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.71 E-value=0.0031 Score=56.96 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=60.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNK 182 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 182 (309)
....|.|.|+.|+||||++..+.+..... ....++. +.+.... ..... ..+-.+.....+.......++..|+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~t-iEdp~E~--~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHIIT-IEDPIEY--VHRNK-RSLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEE-EcCChhh--hccCc-cceEEccccCCCCcCHHHHHHHhhcc
Confidence 35789999999999999999988765432 3444443 2221111 00000 00000001111223355567777776
Q ss_pred CCeEEEEEeCCCCccC-----CCCCCCcEEEEeeCCccc
Q 043850 183 EMRVLIILDNIWTKLE-----KDDQERCTIVLISRSRDL 216 (309)
Q Consensus 183 ~~r~LlVlDdv~~~~~-----~~~~~gs~iliTtR~~~v 216 (309)
. +=.|++|++.+... .....|..++.|....+.
T Consensus 195 ~-pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 195 D-PDVILIGEMRDLETVELALTAAETGHLVFGTLHTNSA 232 (343)
T ss_pred C-CCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEcCCCH
Confidence 5 78999999976554 233456667777777644
No 346
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.70 E-value=0.0072 Score=53.63 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=42.1
Q ss_pred cccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCH
Q 043850 82 YEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDY 148 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 148 (309)
.+.|+=..+....++.++..+ +.|.|.|.+|+||||+|+.++...... .+.|+++...+.
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~ 103 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSR 103 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCCh
Confidence 345655666677777777543 569999999999999999999887633 234555544443
No 347
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0036 Score=48.49 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=41.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKE 183 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~ 183 (309)
.+-|.|.|-+|+|||||+.+++....-. |+++|+-..-..+....-+... .. ..+.+...+.|...+.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~-------~i~isd~vkEn~l~~gyDE~y~--c~-i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLE-------YIEISDLVKENNLYEGYDEEYK--CH-ILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCc-------eEehhhHHhhhcchhccccccc--Cc-cccHHHHHHHHHHHHhcC
Confidence 4668899999999999999999654432 6666643222221111111110 11 245566777777777654
No 348
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.70 E-value=0.024 Score=60.46 Aligned_cols=29 Identities=31% Similarity=0.285 Sum_probs=25.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.++-|.++|++|+|||.||++++....+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VP 1657 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVP 1657 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCc
Confidence 45678999999999999999999887653
No 349
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.70 E-value=0.012 Score=55.97 Aligned_cols=115 Identities=23% Similarity=0.159 Sum_probs=69.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc-c-----CCCeEEEEEecC-----C----------C-C-HHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED-K-----LFDKVVMAEVTQ-----T----------P-D-YRKIEDQFAFDL 159 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~-----~f~~~~wv~~~~-----~----------~-~-~~~~~~~i~~~l 159 (309)
.-..|+|+|+.|+|||||.+.+....... . .--.+.|+.-.. + + . ...-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 44689999999999999999997655322 0 001122222111 0 1 1 145556666666
Q ss_pred CCCCCC------CCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------CCCCCCcEEEEeeCCccccc
Q 043850 160 GMKLDL------NDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE----------KDDQERCTIVLISRSRDLLC 218 (309)
Q Consensus 160 ~~~~~~------~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~----------~~~~~gs~iliTtR~~~v~~ 218 (309)
+.+.+. ..+..+........+--.++-+||||.--+..+ ...-.|+ ||+.|.++.+..
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gt-vl~VSHDr~Fl~ 500 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGT-VLLVSHDRYFLD 500 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCe-EEEEeCCHHHHH
Confidence 655433 133334444444444333479999999988777 4455666 888899997654
No 350
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.70 E-value=0.0014 Score=48.63 Aligned_cols=24 Identities=42% Similarity=0.765 Sum_probs=21.0
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 107 IGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 107 i~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|-|+|.+|+|||+||..++.....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999998887664
No 351
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.69 E-value=0.0092 Score=59.08 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=43.0
Q ss_pred cccccchHHHHHHHHHHhh--cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 043850 82 YEIFDSRKEIFQVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
...++|+...+..+.+.+. ......|.|.|..|+|||++|+.+++..... -...+.+++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~ 437 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAA 437 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEeccc
Confidence 3468899988888876663 2344678999999999999999998765322 12344455543
No 352
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.69 E-value=0.015 Score=54.59 Aligned_cols=60 Identities=22% Similarity=0.208 Sum_probs=37.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC-CCCHHHHHHHHHHHhCCCC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ-TPDYRKIEDQFAFDLGMKL 163 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 163 (309)
..+++++|+.|+||||++.+++.....+.....+..++... .....+-+....+.++.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 47999999999999999999998775432222445555432 1223344444455555443
No 353
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.0017 Score=53.88 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=25.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.+.+|+|.|.+|+||||+|+.++......
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 34789999999999999999999887754
No 354
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.68 E-value=0.031 Score=50.96 Aligned_cols=59 Identities=25% Similarity=0.276 Sum_probs=40.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEec-CCCCHHHHHHHHHHHhCCCC
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT-QTPDYRKIEDQFAFDLGMKL 163 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~ 163 (309)
.+.+|.++|.-|+||||.|-.+++..+.+ .+ .+.-|++. ..+-..+-++.+..+++.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~-kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK-GK-KVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc-CC-ceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 47889999999999999999999888763 22 23333332 23344555677777776653
No 355
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.68 E-value=0.0045 Score=52.10 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh-----cccCCCeEEEEEecCCCCHHHHHHHHHH
Q 043850 91 IFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM-----EDKLFDKVVMAEVTQTPDYRKIEDQFAF 157 (309)
Q Consensus 91 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-----~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 157 (309)
..+.+...+.... +..|.|++|.|||+++..+..... ....-...+-+....+..+..++..+.+
T Consensus 6 Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 6 QREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4445555553332 789999999999987777776662 1112344444444444445555555544
No 356
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.0039 Score=51.28 Aligned_cols=46 Identities=28% Similarity=0.289 Sum_probs=32.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQ 154 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 154 (309)
..+|+|-||=|+||||||+.++++.... .++-.+.+++-++....+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d 49 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYED 49 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHh
Confidence 4689999999999999999999987743 233344455444443333
No 357
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.67 E-value=0.016 Score=48.56 Aligned_cols=27 Identities=33% Similarity=0.349 Sum_probs=23.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-.+++|+|..|+|||||++.++....
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 447899999999999999999987643
No 358
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.022 Score=47.33 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-.+++|+|..|+|||||++.+.....
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 447999999999999999999987654
No 359
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.66 E-value=0.0079 Score=49.54 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.-.+++|+|..|+|||||++.++..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999999999999864
No 360
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.66 E-value=0.015 Score=46.18 Aligned_cols=109 Identities=22% Similarity=0.250 Sum_probs=60.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEe---cCCCCHHHHHHHHH----HHhCCCC--CCCCCH------
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEV---TQTPDYRKIEDQFA----FDLGMKL--DLNDST------ 169 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~~~~~~~~~~i~----~~l~~~~--~~~~~~------ 169 (309)
..|-|++..|.||||+|...+-+.-.. .+ .+.++.+ .........+..+- .+.+... ......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH-GY-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 478888889999999999988776654 12 3333332 22233333333330 0001110 000111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCcc
Q 043850 170 LERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 170 ~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~ 215 (309)
.......++.+....-=|||||++-.... .....+.-+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12333445555554446999999855422 44556678999999974
No 361
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.66 E-value=0.0016 Score=54.21 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.+++|+|..|.|||||.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 79999999999999999999843
No 362
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.65 E-value=0.0033 Score=56.31 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=40.4
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
|.+...++|.++.++.|.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 34566789999999888765554555679999999999999999998765
No 363
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.64 E-value=0.0027 Score=60.74 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=41.4
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 80 KDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
....+++|.+..++.+...+.......+.|+|.+|+|||++|+.+++...
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567899999999998887666667788999999999999999987543
No 364
>PLN02924 thymidylate kinase
Probab=96.64 E-value=0.011 Score=49.92 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=36.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAF 157 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 157 (309)
...|+|-|..|+||||+++.++...... .+....+-..+......+.+++++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 4689999999999999999999998865 3444333222223344555555554
No 365
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.03 Score=53.53 Aligned_cols=51 Identities=27% Similarity=0.264 Sum_probs=38.2
Q ss_pred CcccccchHHH---HHHHHHHhhcCC---------CcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 81 DYEIFDSRKEI---FQVVMESLKDDK---------LKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 81 ~~~~~~gR~~~---~~~l~~~L~~~~---------~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
...+.-|.++. +.++++.|.++. ++=|.++|++|.|||.||++++....+-
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP 210 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP 210 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC
Confidence 34566787754 555566665432 5668999999999999999999888775
No 366
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.63 E-value=0.04 Score=48.02 Aligned_cols=159 Identities=15% Similarity=0.069 Sum_probs=85.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC--CHHHHH--HHHHHHhC-CCCC--------------
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP--DYRKIE--DQFAFDLG-MKLD-------------- 164 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~--~~i~~~l~-~~~~-------------- 164 (309)
+-+..|+|+.|+|||.|.+.+......+-.-+.++||.-..+. ..+... .++.+.=- ..++
T Consensus 87 P~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~F 166 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKF 166 (369)
T ss_pred ceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeccccccccccc
Confidence 4456789999999999999998877776556789998644322 111111 22222110 0000
Q ss_pred -----------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------------CCCCCCcEEEEeeCCc
Q 043850 165 -----------LNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE-------------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 165 -----------~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------------~~~~~gs~iliTtR~~ 214 (309)
.+.+...-.....+.-+++ ++-||+|+.-+... -+...|--|+|.-.+-
T Consensus 167 v~msy~e~t~~~NldI~~p~NiF~~Aa~~G-PiaIImDECMe~Lg~~~~is~fFHAlPSKL~~rfp~CTgy~VfVVLHNm 245 (369)
T PF02456_consen 167 VEMSYDEATSPENLDITNPNNIFAQAAKKG-PIAIIMDECMEKLGSHKSISKFFHALPSKLHDRFPKCTGYYVFVVLHNM 245 (369)
T ss_pred eeecHhhhCCccccCCCCchHHHHHHHhcC-CEEEEhHHHHHHhcCCCChhHHHhcCcHHHhhhccCCceeEEEEEeccC
Confidence 0011111122233333444 79999998744332 2223444455544443
Q ss_pred cccccccCCCceEecC----CCCCCCCCcHHHHHHHHHhCCCchHHHHHHHHh
Q 043850 215 DLLCNDMNSQKDFWID----DSTRISAYQPTEHEIVERRGGLPVAPSTIANAL 263 (309)
Q Consensus 215 ~v~~~~~~~~~~~~l~----~~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l 263 (309)
.--....+.....+++ -.++.-....+.+-|..+.+|+|.+|.++-..+
T Consensus 246 nPR~d~gGNI~~LKiqAK~HIiSp~~~p~QlsRFin~yt~glp~~i~~LLKdi 298 (369)
T PF02456_consen 246 NPRRDIGGNIANLKIQAKCHIISPKMHPSQLSRFINNYTKGLPTAISLLLKDI 298 (369)
T ss_pred CcccccCCCccchhhhceeeeecCCCCHHHHHHHHHHhccCCChhHHHHHHHH
Confidence 3211111222222222 123333445678999999999999997776543
No 367
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.63 E-value=0.0015 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+|+|.|.+|+|||||++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 368
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.63 E-value=0.0018 Score=52.58 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+++|+|++|+|||||++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 369
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.63 E-value=0.004 Score=55.84 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=40.7
Q ss_pred CcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 81 DYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+...++|.++.+..|+-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 345788999999888777777767778899999999999999998765
No 370
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.63 E-value=0.0034 Score=54.33 Aligned_cols=88 Identities=20% Similarity=0.235 Sum_probs=59.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCC-------------------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKL------------------- 163 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------------- 163 (309)
.-+++.|.|.+|+|||+++.++....... ...++||+..+.+ .++...+.+ ++...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~--~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~~ 96 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESP--EELLENARS-FGWDLEVYIEKGKLAILDAFLSEK 96 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCH--HHHHHHHHH-cCCCHHHHhhcCCEEEEEcccccc
Confidence 45899999999999999999999887765 7889999987653 233332221 21110
Q ss_pred C-------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 043850 164 D-------LNDSTLERTDGLRKRLNKEMRVLIILDNIWT 195 (309)
Q Consensus 164 ~-------~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~ 195 (309)
. ...+...+...+.+....-+..-+|+|++-.
T Consensus 97 ~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~ 135 (260)
T COG0467 97 GLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITE 135 (260)
T ss_pred ccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCch
Confidence 0 0124455666777776554467899999864
No 371
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.62 E-value=0.0019 Score=52.34 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=22.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987754
No 372
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.62 E-value=0.0061 Score=54.72 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=48.0
Q ss_pred cccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHH
Q 043850 84 IFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQ 154 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 154 (309)
.++|+++.+..+...+..+ ..+.+.|.+|+|||+||+.++...... .+++.+.......++.-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~~-----~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGLP-----FVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCCC-----eEEEecCCCCCHHHhcCc
Confidence 3788888888877776554 578899999999999999999877633 456666666666655433
No 373
>PRK06217 hypothetical protein; Validated
Probab=96.62 E-value=0.0017 Score=53.08 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=26.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcccCC--CeEEEE
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMEDKLF--DKVVMA 140 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~wv 140 (309)
.|.|.|.+|+||||||+.+....... +| +..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-HLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-EEEcCceeec
Confidence 58999999999999999999886532 33 345553
No 374
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.61 E-value=0.0034 Score=52.07 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVA 125 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~ 125 (309)
+++.|.|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 375
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.60 E-value=0.0017 Score=51.12 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998763
No 376
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.60 E-value=0.015 Score=53.86 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=59.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCCCC------CCCCHH------
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGMKLD------LNDSTL------ 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~~~~------ 170 (309)
-+-++|.|.+|+|||+|+.++++..... +-+.++++-+++.. ...+++.++...-..... .+.+..
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~ 216 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVG 216 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHH
Confidence 4678999999999999999998886533 34678888887765 356666666543211100 011111
Q ss_pred HHHHHHHHHHhc--CCeEEEEEeCCCCc
Q 043850 171 ERTDGLRKRLNK--EMRVLIILDNIWTK 196 (309)
Q Consensus 171 ~~~~~l~~~L~~--~~r~LlVlDdv~~~ 196 (309)
...-.+.++++. ++.+||++||+...
T Consensus 217 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 217 HTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 233345666653 46899999999554
No 377
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.60 E-value=0.0022 Score=48.63 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=18.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 107 IGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 107 i~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
|.|.|.+|+|||++|+.++......
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 6799999999999999999887755
No 378
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.59 E-value=0.0018 Score=50.50 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+|.|.|.+|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 379
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.59 E-value=0.018 Score=56.75 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=23.7
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+.-..|+|+|..|+|||||++.+..-+.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3447899999999999999999976554
No 380
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.012 Score=51.46 Aligned_cols=91 Identities=22% Similarity=0.291 Sum_probs=56.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh-cccCC-------CeEEEEEecCC-CCHHHHHHHHHHHhCCCCCCCCC-------
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM-EDKLF-------DKVVMAEVTQT-PDYRKIEDQFAFDLGMKLDLNDS------- 168 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f-------~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~------- 168 (309)
-++.|.|.+|+|||||+...+=... .++.| ..+++|++... .++..-++.+..+++.++....+
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~ 169 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVS 169 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheeccccc
Confidence 3455669999999999987654432 22333 36788888754 45677778888888876543110
Q ss_pred -------HH--HHHHHHHHHHhcCCeEEEEEeCCCC
Q 043850 169 -------TL--ERTDGLRKRLNKEMRVLIILDNIWT 195 (309)
Q Consensus 169 -------~~--~~~~~l~~~L~~~~r~LlVlDdv~~ 195 (309)
.- .+.......+.+.++-++|+|-+-.
T Consensus 170 Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~ 205 (402)
T COG3598 170 GAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVA 205 (402)
T ss_pred cCCCccccccHHHHHHHHHHHHHhCCCeEEEcchhh
Confidence 01 1223333334455577899998744
No 381
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.57 E-value=0.0043 Score=58.84 Aligned_cols=60 Identities=23% Similarity=0.264 Sum_probs=45.3
Q ss_pred CCCcccccchHHHHHHHHHHhhc-----CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEe
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKD-----DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEV 142 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 142 (309)
|....++.--.+.++++..||.. ...+++.+.|++|+||||.++.+++... |+.+=|.+.
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 44455666667788888888853 2357899999999999999999998764 666667643
No 382
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.57 E-value=0.0072 Score=55.95 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
-..++|+|++|+||||||+.+.--.
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHccc
Confidence 3689999999999999999986544
No 383
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.57 E-value=0.02 Score=54.63 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=67.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------------CCCC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD---------------LNDS 168 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------------~~~~ 168 (309)
-.++.|.|.+|+|||+|+.+++...... -..++|++.... ..++...+ ..++.+.. ...+
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCC
Confidence 4788999999999999999998766443 467888877654 44444333 34443211 1123
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------------CCCCCCcEEEEeeCCc
Q 043850 169 TLERTDGLRKRLNKEMRVLIILDNIWTKLE----------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 169 ~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~----------------~~~~~gs~iliTtR~~ 214 (309)
.++....+.+.+...+.-++|+|.+..... .....|..+|+|....
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~~~~~~~~~l~~l~~~~k~~~~t~l~t~~~~ 409 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLSALARGGSLNEFRQFVIRLTDYLKSEEITGLFTNLTP 409 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhCCHHHHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 455666677766554456899999854221 2244677788886544
No 384
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.56 E-value=0.0029 Score=51.50 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=22.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
+|+|.|.+|+||||||..+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988753
No 385
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0051 Score=55.06 Aligned_cols=29 Identities=34% Similarity=0.322 Sum_probs=25.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.-+-|.++|++|.|||-||+.|+......
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 34678999999999999999999887754
No 386
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.55 E-value=0.004 Score=55.95 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=44.0
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 80 KDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
-+...++|-++....|+..+.++...-|.|.|..|+||||+|+.+++-...
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 356788999999999988888888888889999999999999999877653
No 387
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.55 E-value=0.0028 Score=52.89 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=27.6
Q ss_pred HhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 98 SLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 98 ~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+.+.++++|+++|..|+|||||..++.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34567899999999999999999999988754
No 388
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.55 E-value=0.0019 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+|+|.|.+|+||||||+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 389
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.55 E-value=0.0051 Score=51.20 Aligned_cols=109 Identities=14% Similarity=0.112 Sum_probs=56.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDST---LERTDGLRKRL 180 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~l~~~L 180 (309)
..++.|.|+.|.||||+.+.++...--. ..-.++.... .. -.++..|...++......... ..-...+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999999886543211 0011111110 11 122233333333322111111 11111222222
Q ss_pred --hcCCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCccccc
Q 043850 181 --NKEMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRDLLC 218 (309)
Q Consensus 181 --~~~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~v~~ 218 (309)
.. ++-|+++|+.....+ .....++.+|++|....++.
T Consensus 104 ~~~~-~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~ 155 (204)
T cd03282 104 DYAD-GDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAA 155 (204)
T ss_pred HhcC-CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 23 368999999855432 12233788999999887654
No 390
>PF13245 AAA_19: Part of AAA domain
Probab=96.54 E-value=0.0089 Score=41.24 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=18.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+.+++.|.|.+|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45788899999999995555444443
No 391
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.53 E-value=0.0027 Score=53.83 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.|.|.|++|+||||+|+.++....
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988764
No 392
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.52 E-value=0.023 Score=52.83 Aligned_cols=92 Identities=20% Similarity=0.270 Sum_probs=58.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCCCC------CCCCHH------
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGMKLD------LNDSTL------ 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~~~~------ 170 (309)
-+-++|.|.+|+|||||+..++....... -+.++++-+++.. .+.+++.+++..-..... .+....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 46789999999999999999887766432 2467777777665 456667766654221110 011121
Q ss_pred HHHHHHHHHHh--cCCeEEEEEeCCCCc
Q 043850 171 ERTDGLRKRLN--KEMRVLIILDNIWTK 196 (309)
Q Consensus 171 ~~~~~l~~~L~--~~~r~LlVlDdv~~~ 196 (309)
...-.+.++++ .++.+||++|++...
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 12333556662 345899999999543
No 393
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.51 E-value=0.0054 Score=58.02 Aligned_cols=91 Identities=18% Similarity=0.178 Sum_probs=50.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeE-EEEEecCCCC-HHHHHHHHHHHh-CCCCCCCC----CHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKV-VMAEVTQTPD-YRKIEDQFAFDL-GMKLDLND----STLERTDGL 176 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~wv~~~~~~~-~~~~~~~i~~~l-~~~~~~~~----~~~~~~~~l 176 (309)
-.-.+|+|.+|+|||||++.+++..... +-++. +.+-+.+.+. +.++.+.+-..+ ....+.+. ....+.-.+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 3678899999999999999999877543 23333 3445555443 333333321111 11111111 112233334
Q ss_pred HHHH-hcCCeEEEEEeCCCC
Q 043850 177 RKRL-NKEMRVLIILDNIWT 195 (309)
Q Consensus 177 ~~~L-~~~~r~LlVlDdv~~ 195 (309)
-++| ..++.+||++|++..
T Consensus 495 Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHcCCCEEEEEeCchH
Confidence 4555 334589999999853
No 394
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.51 E-value=0.0096 Score=49.37 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=22.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.-.+++|+|..|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999999999999876
No 395
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=96.51 E-value=0.017 Score=51.30 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-.+++|.|+.|.|||||.+.++....
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999987643
No 396
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.50 E-value=0.018 Score=48.56 Aligned_cols=106 Identities=20% Similarity=0.145 Sum_probs=60.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC---------C-------C
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL---------N-------D 167 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~-------~ 167 (309)
-.++.|.|.+|+|||++|.+++...-.+ =..++|++.... ..++...+ ..++.+... . .
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~--~~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 90 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEER--EERILGYA-KSKGWDLEDYIDKSLYIVRLDPSDFKT 90 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCC--HHHHHHHH-HHcCCChHHHHhCCeEEEecCHHHHHh
Confidence 5789999999999999999998764433 346778877653 33433332 333322110 0 0
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEeCCCCcc----C-------------CCCCCCcEEEEeeCCc
Q 043850 168 STLERTDGLRKRLNKEMRVLIILDNIWTKL----E-------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 168 ~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~----~-------------~~~~~gs~iliTtR~~ 214 (309)
........+...+.....-++|+|.+.... . .....+..+++|+...
T Consensus 91 ~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~ 154 (224)
T TIGR03880 91 SLNRIKNELPILIKELGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEAD 154 (224)
T ss_pred hHHHHHHHHHHHHHHhCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 122333344444443335678999875321 1 1234466688887643
No 397
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.50 E-value=0.0015 Score=56.85 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=25.8
Q ss_pred HHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 94 VVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 94 ~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+++.+... .+-+.++|+.|+|||++++.......
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHHHhhhccCC
Confidence 444444444 35678999999999999999886544
No 398
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.49 E-value=0.004 Score=50.87 Aligned_cols=37 Identities=30% Similarity=0.445 Sum_probs=29.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEe
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEV 142 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 142 (309)
.++|.|+|+.|+|||||+..+....... |...+..+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeecc
Confidence 4789999999999999999999876654 655555443
No 399
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.49 E-value=0.0031 Score=50.81 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=25.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
..++++|+|..|+|||||+..+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999887653
No 400
>PRK13947 shikimate kinase; Provisional
Probab=96.48 E-value=0.0023 Score=51.50 Aligned_cols=25 Identities=40% Similarity=0.410 Sum_probs=22.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.|.|+|++|+||||+|+.+++....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999987654
No 401
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.48 E-value=0.072 Score=47.52 Aligned_cols=29 Identities=45% Similarity=0.495 Sum_probs=25.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
+..+++++|++|+||||++..++......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999887643
No 402
>PRK14527 adenylate kinase; Provisional
Probab=96.48 E-value=0.003 Score=51.95 Aligned_cols=29 Identities=31% Similarity=0.313 Sum_probs=24.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
....+|.|+|++|+||||+|+.++.....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34678999999999999999999877653
No 403
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.48 E-value=0.012 Score=53.92 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=38.7
Q ss_pred ccccchHHHHHHHHHHhhc--------------CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 83 EIFDSRKEIFQVVMESLKD--------------DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..++|.++..+.+..++.. -.+..|.++|++|+|||+||+.++.....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~ 76 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578999988888877732 01468999999999999999999988754
No 404
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.48 E-value=0.014 Score=48.82 Aligned_cols=87 Identities=21% Similarity=0.324 Sum_probs=53.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHHHHHhCC-------CCCCCCCHHH-----
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGM-------KLDLNDSTLE----- 171 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~----- 171 (309)
.-++|.|.+|+|||+|+..+++... -+.++++-+++.. .+.++..++...-.. ... +.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~-~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATS-DEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEET-TS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccc-hhhHHHHhhhh
Confidence 6789999999999999999998875 3455888887664 456666666433110 111 111111
Q ss_pred -HHHHHHHHHh-cCCeEEEEEeCCCCc
Q 043850 172 -RTDGLRKRLN-KEMRVLIILDNIWTK 196 (309)
Q Consensus 172 -~~~~l~~~L~-~~~r~LlVlDdv~~~ 196 (309)
..-.+.+++. .++.+|+++||+...
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred ccchhhhHHHhhcCCceeehhhhhHHH
Confidence 1222334442 235899999998443
No 405
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.46 E-value=0.0075 Score=50.43 Aligned_cols=42 Identities=24% Similarity=0.424 Sum_probs=30.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCH
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDY 148 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 148 (309)
.|+|+|-||+||||+|..++.....+.. ..++=|+...++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~-~~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGG-YNVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCCh
Confidence 5899999999999999997766655532 34555666666554
No 406
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.46 E-value=0.0081 Score=54.71 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 91 IFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 91 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.++.+++.+.......+.|.|.||+|||+|.+.+.+..+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~ 49 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR 49 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc
Confidence 34555566656677899999999999999999999887654
No 407
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.46 E-value=0.005 Score=48.91 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 91 IFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 91 ~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.+++|.+.|.. ++++++|..|+|||||...+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 35666676643 799999999999999999987653
No 408
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.46 E-value=0.021 Score=50.53 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=22.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|.|+.|.|||||.+.+....
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 409
>PRK14530 adenylate kinase; Provisional
Probab=96.46 E-value=0.0028 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987764
No 410
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=96.45 E-value=0.0051 Score=55.64 Aligned_cols=139 Identities=16% Similarity=0.183 Sum_probs=77.3
Q ss_pred cchHHHHHHHHHHhhc-----------------CCCcEEEEEeCCCCcHHHHHHHHHHHhhccc--CCC---eEEEEE--
Q 043850 86 DSRKEIFQVVMESLKD-----------------DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDK--LFD---KVVMAE-- 141 (309)
Q Consensus 86 ~gR~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~f~---~~~wv~-- 141 (309)
.|-..++..|.+.+.. ..-.++.|+|.+|+||||+.+.+........ .|. +.+=+.
T Consensus 374 ~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~n 453 (593)
T COG2401 374 KGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN 453 (593)
T ss_pred ccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecccc
Confidence 3445666777666521 2346899999999999999999987765421 111 111111
Q ss_pred -------ecC--CCCHHHHHHHH-------------HHHhCCCCCC--------CCCHHHHHHHHHHHHhcCCeEEEEEe
Q 043850 142 -------VTQ--TPDYRKIEDQF-------------AFDLGMKLDL--------NDSTLERTDGLRKRLNKEMRVLIILD 191 (309)
Q Consensus 142 -------~~~--~~~~~~~~~~i-------------~~~l~~~~~~--------~~~~~~~~~~l~~~L~~~~r~LlVlD 191 (309)
-.- .++-..++.++ ++..|..... ..+.+.-...|.+.+..+ +-+++.|
T Consensus 454 t~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaer-pn~~~iD 532 (593)
T COG2401 454 TVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAER-PNVLLID 532 (593)
T ss_pred chhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcC-CCcEEhh
Confidence 011 12222333333 3333332211 111223344566666664 6889999
Q ss_pred CCCCccC-------------CCCCCCcEEEEeeCCccccccccCCCce
Q 043850 192 NIWTKLE-------------KDDQERCTIVLISRSRDLLCNDMNSQKD 226 (309)
Q Consensus 192 dv~~~~~-------------~~~~~gs~iliTtR~~~v~~~~~~~~~~ 226 (309)
.+....+ .....|+.+++.|+.+++.. .+..+..
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~-AL~PD~l 579 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGN-ALRPDTL 579 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHh-ccCCcee
Confidence 9877766 33446777887788787754 3444433
No 411
>PRK13949 shikimate kinase; Provisional
Probab=96.43 E-value=0.0027 Score=51.25 Aligned_cols=25 Identities=40% Similarity=0.364 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-|.|+|++|+||||+++.++....
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998765
No 412
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.43 E-value=0.018 Score=55.00 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=45.3
Q ss_pred cccccchHHHHHHHHHHhhc--CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 043850 82 YEIFDSRKEIFQVVMESLKD--DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT 145 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 145 (309)
...++|+...+.++.+.+.. .....|.|+|..|+|||++|+.+.+..... -...+.+++..-
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccC
Confidence 45688999888888887742 345678899999999999999998865422 223455666544
No 413
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.42 E-value=0.021 Score=47.09 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|.|..|+|||||.+.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999998765
No 414
>PRK04132 replication factor C small subunit; Provisional
Probab=96.41 E-value=0.069 Score=53.50 Aligned_cols=128 Identities=9% Similarity=0.035 Sum_probs=70.8
Q ss_pred e--CCCCcHHHHHHHHHHHhhcccCC-CeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEE
Q 043850 111 G--MGGVGKTTLVKQVAMKVMEDKLF-DKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVL 187 (309)
Q Consensus 111 G--~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~L 187 (309)
| +.++||||+|..+++..-.. .+ ..++-++.++..+...+ ++++..+....+. .+.+.-+
T Consensus 571 G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~~---------------~~~~~KV 633 (846)
T PRK04132 571 GNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVI-REKVKEFARTKPI---------------GGASFKI 633 (846)
T ss_pred CCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHH-HHHHHHHHhcCCc---------------CCCCCEE
Confidence 7 88999999999999986443 23 35677788876555533 3333322111000 1112579
Q ss_pred EEEeCCCCccC----------CCCCCCcEEEEeeCCcc-ccccccCCCceEecC---------------CCCCCCCCcHH
Q 043850 188 IILDNIWTKLE----------KDDQERCTIVLISRSRD-LLCNDMNSQKDFWID---------------DSTRISAYQPT 241 (309)
Q Consensus 188 lVlDdv~~~~~----------~~~~~gs~iliTtR~~~-v~~~~~~~~~~~~l~---------------~~~~~~~~~~~ 241 (309)
+|||+++.... ......+++|++|.+.. +..........+++. ......-..+.
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~ 713 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEG 713 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 99999988764 22234566766666553 221111222344443 01111223456
Q ss_pred HHHHHHHhCCCchH
Q 043850 242 EHEIVERRGGLPVA 255 (309)
Q Consensus 242 ~~~i~~~c~GlPLa 255 (309)
...|++.|+|-+-.
T Consensus 714 L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 714 LQAILYIAEGDMRR 727 (846)
T ss_pred HHHHHHHcCCCHHH
Confidence 77888888887743
No 415
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.41 E-value=0.037 Score=48.07 Aligned_cols=91 Identities=16% Similarity=0.209 Sum_probs=49.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLN 181 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 181 (309)
+..+++++|.+|+||||++..+......+ =..+.+++..... ....-+......++.+.....+...+...+ +.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~--~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l-~~l~ 150 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRAL-TYFK 150 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHH-HHHH
Confidence 34799999999999999999998776433 1245555554221 122223333334443322223344443333 3333
Q ss_pred c-CCeEEEEEeCCCCc
Q 043850 182 K-EMRVLIILDNIWTK 196 (309)
Q Consensus 182 ~-~~r~LlVlDdv~~~ 196 (309)
. .+.=++++|..-..
T Consensus 151 ~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 151 EEARVDYILIDTAGKN 166 (270)
T ss_pred hcCCCCEEEEECCCCC
Confidence 2 12357777776443
No 416
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.40 E-value=0.0026 Score=51.70 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
++|+|+|+.|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998753
No 417
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.39 E-value=0.006 Score=50.51 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=25.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
....+|.|+|.+|+||||||+.+......
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999987643
No 418
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0059 Score=58.02 Aligned_cols=29 Identities=38% Similarity=0.456 Sum_probs=24.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.++.+.++|++|.|||.||+.+++.....
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~ 303 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR 303 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe
Confidence 45689999999999999999999955543
No 419
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.39 E-value=0.0071 Score=53.89 Aligned_cols=94 Identities=15% Similarity=0.276 Sum_probs=62.1
Q ss_pred ccccchHHHHHHHHHHhh------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEE----EecCCC---CHH
Q 043850 83 EIFDSRKEIFQVVMESLK------DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMA----EVTQTP---DYR 149 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv----~~~~~~---~~~ 149 (309)
..|+|-++.+++|++.+. +..-+++.++|+.|.|||||+..+.+-.+.- .+|. .+.+.+ -+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y-----~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY-----PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE-----EEEEecCCccccChhhhCCH
Confidence 478999999999999984 2456899999999999999999998877653 2333 222221 134
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhc
Q 043850 150 KIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNK 182 (309)
Q Consensus 150 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 182 (309)
++-..+.+.++.......++-- ...|.+...+
T Consensus 136 ~~r~~~~~~~~~~i~g~l~p~~-~~~L~~~y~G 167 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELCPWC-RKRLLEEYGG 167 (358)
T ss_pred hHHHHHHHHhCcccCCCcCHHH-HHHHHHHhCC
Confidence 5556667777765544333332 2344444443
No 420
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.39 E-value=0.0032 Score=49.60 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhh
Q 043850 107 IGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 107 i~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|.|+|++|+||||+|+.++....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987764
No 421
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.38 E-value=0.025 Score=54.25 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=23.9
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+.-..++|+|..|+|||||++.+.....
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3457999999999999999999976554
No 422
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.38 E-value=0.0048 Score=49.66 Aligned_cols=24 Identities=46% Similarity=0.574 Sum_probs=20.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 107 IGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 107 i~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|.|.|.+|+|||||++.+++..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998853
No 423
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.37 E-value=0.013 Score=48.13 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=22.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
+|+|.|+.|+||||+++.+++....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988764
No 424
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.36 E-value=0.0025 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q 043850 107 IGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 107 i~I~G~~GiGKTtLa~~v~~~~ 128 (309)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998765
No 425
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.36 E-value=0.016 Score=53.37 Aligned_cols=47 Identities=21% Similarity=0.158 Sum_probs=35.8
Q ss_pred ccccchHHHHHHHHHHhh-------c----C-------CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 83 EIFDSRKEIFQVVMESLK-------D----D-------KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~-------~----~-------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..++|.++.++.+...+. . . ....+.++|++|+|||+||+.++....
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 457899988888865551 1 1 125799999999999999999997654
No 426
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.35 E-value=0.019 Score=54.97 Aligned_cols=129 Identities=19% Similarity=0.245 Sum_probs=70.3
Q ss_pred HHHHHhhcCCCcEEEEEeCCCCcHHH-HHHHHHHHhhcccCCCeEEEEEecCCCCH--HHHHHHHHHHhCCCCCC-----
Q 043850 94 VVMESLKDDKLKVIGVYGMGGVGKTT-LVKQVAMKVMEDKLFDKVVMAEVTQTPDY--RKIEDQFAFDLGMKLDL----- 165 (309)
Q Consensus 94 ~l~~~L~~~~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~----- 165 (309)
+|++.+.+ ..+|.|+|..|+|||| |++.+|.+--.. .+ -|.+.+...+ ..+.+.+.+.++.....
T Consensus 363 ~ll~~ir~--n~vvvivgETGSGKTTQl~QyL~edGY~~---~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs 435 (1042)
T KOG0924|consen 363 QLLSVIRE--NQVVVIVGETGSGKTTQLAQYLYEDGYAD---NG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS 435 (1042)
T ss_pred HHHHHHhh--CcEEEEEecCCCCchhhhHHHHHhccccc---CC--eeeecCchHHHHHHHHHHHHHHhCCccccccceE
Confidence 44444433 4799999999999998 666666543222 12 3444454433 44566666666443221
Q ss_pred -----C----------CCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC------------CCCCCCcEEEEeeCCcccc-
Q 043850 166 -----N----------DSTLERTDGLRKRLNKEMRVLIILDNIWTKLE------------KDDQERCTIVLISRSRDLL- 217 (309)
Q Consensus 166 -----~----------~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~------------~~~~~gs~iliTtR~~~v~- 217 (309)
- .+..-+.+.|.+..-.+ --.||+|......- ......-++||||-.-+.-
T Consensus 436 IRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~k-YSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a~k 514 (1042)
T KOG0924|consen 436 IRFEDVTSEDTKIKYMTDGILLRESLKDRDLDK-YSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDAQK 514 (1042)
T ss_pred EEeeecCCCceeEEEeccchHHHHHhhhhhhhh-eeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccHHH
Confidence 0 11112233344433343 45889999855432 4455678999998765321
Q ss_pred -ccccCCCceEecC
Q 043850 218 -CNDMNSQKDFWID 230 (309)
Q Consensus 218 -~~~~~~~~~~~l~ 230 (309)
+..++....+.+.
T Consensus 515 f~nfFgn~p~f~Ip 528 (1042)
T KOG0924|consen 515 FSNFFGNCPQFTIP 528 (1042)
T ss_pred HHHHhCCCceeeec
Confidence 2233434444444
No 427
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.34 E-value=0.0038 Score=51.88 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=23.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+|+|+|++|+|||||++.++....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 347899999999999999999998643
No 428
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.046 Score=45.30 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=30.6
Q ss_pred ccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 83 EIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-++|-...++.+-- .=....|.++.|++|+|||||.+.+-+...
T Consensus 14 ~~yYg~~~aL~~i~l--~i~~~~VTAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 14 NLYYGDKHALKDINL--DIPKNKVTALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred eEEECchhhhccCce--eccCCceEEEECCCCcCHHHHHHHHHhhcc
Confidence 345674444443321 224568999999999999999998866543
No 429
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.34 E-value=0.04 Score=44.02 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
+++.|+|+.|.|||++.+.+.--
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999987443
No 430
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.004 Score=52.30 Aligned_cols=115 Identities=20% Similarity=0.269 Sum_probs=65.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc------------------cCCCe--EEEEEecCCC----CHHHH-------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED------------------KLFDK--VVMAEVTQTP----DYRKI------- 151 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------~~f~~--~~wv~~~~~~----~~~~~------- 151 (309)
.-.+++|+|.+|+|||||++.++.-.+.. .+|.. .+|=+-.... ++.++
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~ 111 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP 111 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc
Confidence 34789999999999999999997655421 01111 1222211111 22222
Q ss_pred ---------HHHHHHHhCCCCCC------CCCH-HHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCC
Q 043850 152 ---------EDQFAFDLGMKLDL------NDST-LERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQ 202 (309)
Q Consensus 152 ---------~~~i~~~l~~~~~~------~~~~-~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~ 202 (309)
..+++.+.+.+..- ..+- +...-.+.+.|.-+ +-+||+|..-+..+ ....
T Consensus 112 ~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~-PklLIlDEptSaLD~siQa~IlnlL~~l~~~ 190 (252)
T COG1124 112 HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE-PKLLILDEPTSALDVSVQAQILNLLLELKKE 190 (252)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC-CCEEEecCchhhhcHHHHHHHHHHHHHHHHh
Confidence 34445555554321 1122 22223344555554 78999999877766 3455
Q ss_pred CCcEEEEeeCCccccc
Q 043850 203 ERCTIVLISRSRDLLC 218 (309)
Q Consensus 203 ~gs~iliTtR~~~v~~ 218 (309)
.+-.+|+.|.+-.++.
T Consensus 191 ~~lt~l~IsHdl~~v~ 206 (252)
T COG1124 191 RGLTYLFISHDLALVE 206 (252)
T ss_pred cCceEEEEeCcHHHHH
Confidence 6667888888887653
No 431
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.33 E-value=0.014 Score=48.02 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=24.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
..|+|.|..|+||||+++.+++.....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999887653
No 432
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.32 E-value=0.021 Score=51.01 Aligned_cols=44 Identities=34% Similarity=0.548 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHhhc---CCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 88 RKEIFQVVMESLKD---DKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 88 R~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
|+...+.|.+.+.+ ..+.+|+|.|.=|+|||++.+.+.+.....
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34556667777754 467899999999999999999999888765
No 433
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.31 E-value=0.0038 Score=46.76 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=20.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 107 IGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 107 i~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|.|+|..|+|||||.+.++.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999876543
No 434
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.31 E-value=0.011 Score=44.69 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=32.6
Q ss_pred cccchHHHHHHHHHHh----hc---CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 84 IFDSRKEIFQVVMESL----KD---DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L----~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.++|-.-..+.+++.+ .+ +.+-|++.+|.+|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4566554444444444 32 356788999999999999999999884
No 435
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.31 E-value=0.031 Score=51.77 Aligned_cols=90 Identities=17% Similarity=0.220 Sum_probs=53.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCC-HHHHHHHHHHHhCCCCC------CCCCHH-----
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPD-YRKIEDQFAFDLGMKLD------LNDSTL----- 170 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~------~~~~~~----- 170 (309)
.-..++|+|..|+|||||++.+++... .+.++++-+++... ..++..+.+..-+.... .+....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 457899999999999999999987654 34455566666543 44555444443221110 011111
Q ss_pred -HHHHHHHHHH-hcCCeEEEEEeCCCCc
Q 043850 171 -ERTDGLRKRL-NKEMRVLIILDNIWTK 196 (309)
Q Consensus 171 -~~~~~l~~~L-~~~~r~LlVlDdv~~~ 196 (309)
...-.+.+++ ..++.+||++||+...
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 1222344555 2245899999999543
No 436
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.29 E-value=0.026 Score=45.53 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=43.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCHHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL---NDSTLERTDGLRKRLN 181 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~L~ 181 (309)
.++.|.|.+|+|||++|..++..... .++++.-.. +...+....|.......+.. .+...++...+.....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQ-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCC-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 36899999999999999999876422 123333222 33445555554443222211 1122233333433333
Q ss_pred cCCeEEEEEeCC
Q 043850 182 KEMRVLIILDNI 193 (309)
Q Consensus 182 ~~~r~LlVlDdv 193 (309)
+ .-++++|.+
T Consensus 76 ~--~~~VlID~L 85 (170)
T PRK05800 76 P--GRCVLVDCL 85 (170)
T ss_pred C--CCEEEehhH
Confidence 3 246888886
No 437
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.28 E-value=0.029 Score=50.55 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=23.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-.+++|+|+.|.|||||.+.+.....
T Consensus 66 ~Gei~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 66 SGECFGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 447999999999999999999987653
No 438
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.28 E-value=0.0043 Score=51.29 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..+|.|.|.+|+||||+|..++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998874
No 439
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.28 E-value=0.011 Score=54.77 Aligned_cols=90 Identities=19% Similarity=0.220 Sum_probs=49.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHh-----CCCCCCCCCHH------HH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDL-----GMKLDLNDSTL------ER 172 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~~~~~~~------~~ 172 (309)
-..++|+|..|+|||||++.++..... ..++++.......++.++....+... +.-...+.... ..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 468999999999999999888754432 23445544323344554444443332 11111111111 12
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCCCc
Q 043850 173 TDGLRKRLN-KEMRVLIILDNIWTK 196 (309)
Q Consensus 173 ~~~l~~~L~-~~~r~LlVlDdv~~~ 196 (309)
.-.+.+++. .++.+||++||+...
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHHH
Confidence 223444442 245899999998543
No 440
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.27 E-value=0.042 Score=51.01 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=59.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH-----
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGMKL------DLNDSTLE----- 171 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~----- 171 (309)
-+-++|.|.+|+|||+|+..++...... +-..++++-+++.. .+.+++.++...=.... ..+.+...
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4678999999999999999998876543 23467778777664 45667776654321111 00122111
Q ss_pred -HHHHHHHHHhc--CCeEEEEEeCCCCcc
Q 043850 172 -RTDGLRKRLNK--EMRVLIILDNIWTKL 197 (309)
Q Consensus 172 -~~~~l~~~L~~--~~r~LlVlDdv~~~~ 197 (309)
..-.+.++++. ++.+||++|++....
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~DslTR~A 250 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNIFRFT 250 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecchhHHH
Confidence 23345566633 458999999995543
No 441
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.27 E-value=0.0045 Score=50.04 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...|.|+|+.|+|||||++.++....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35699999999999999999998754
No 442
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.26 E-value=0.023 Score=52.47 Aligned_cols=90 Identities=18% Similarity=0.299 Sum_probs=53.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCCCC------CCCCHHH----
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGMKLD------LNDSTLE---- 171 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~~~~~---- 171 (309)
.-..++|+|..|+|||||++.+++... .+.++.+-+++.. .+.++..+++..-+.... .+.....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 347899999999999999999986432 3556666676654 345566665444221110 0111111
Q ss_pred --HHHHHHHHHh-cCCeEEEEEeCCCCc
Q 043850 172 --RTDGLRKRLN-KEMRVLIILDNIWTK 196 (309)
Q Consensus 172 --~~~~l~~~L~-~~~r~LlVlDdv~~~ 196 (309)
..-.+.+++. .++.+||++||+...
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 2223445552 235899999999543
No 443
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.25 E-value=0.037 Score=52.44 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=66.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEE-----------ecCCCCHHHH------------------HH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAE-----------VTQTPDYRKI------------------ED 153 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~-----------~~~~~~~~~~------------------~~ 153 (309)
.-.+++|+|..|+|||||++.++...... .+.+++. .....++.+. ..
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~ 125 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIP 125 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHH
Confidence 44799999999999999999998765421 2222221 0111121111 12
Q ss_pred HHHHHhCCCCC-----CCCCHHH-HHHHHHHHHhcCCeEEEEEeCCCCccC------------CCCCCCcEEEEeeCCcc
Q 043850 154 QFAFDLGMKLD-----LNDSTLE-RTDGLRKRLNKEMRVLIILDNIWTKLE------------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 154 ~i~~~l~~~~~-----~~~~~~~-~~~~l~~~L~~~~r~LlVlDdv~~~~~------------~~~~~gs~iliTtR~~~ 215 (309)
.+++.++.... ...+..+ ..-.+...|..+ +-+|+||+.-+..+ .....|..||++|++..
T Consensus 126 elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~-P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~ 204 (549)
T PRK13545 126 EIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHIN-PDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204 (549)
T ss_pred HHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhC-CCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 33444443211 1122222 222344455554 68999999987766 11234677999999876
Q ss_pred ccccccCCCceEecC
Q 043850 216 LLCNDMNSQKDFWID 230 (309)
Q Consensus 216 v~~~~~~~~~~~~l~ 230 (309)
.+.. .+++++.+.
T Consensus 205 ~i~~--l~DrIivL~ 217 (549)
T PRK13545 205 QVKS--FCTKALWLH 217 (549)
T ss_pred HHHH--hCCEEEEEE
Confidence 5321 234445454
No 444
>PRK13975 thymidylate kinase; Provisional
Probab=96.25 E-value=0.0044 Score=51.09 Aligned_cols=26 Identities=42% Similarity=0.464 Sum_probs=23.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..|+|.|+.|+||||+|+.++.....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999988764
No 445
>PRK08149 ATP synthase SpaL; Validated
Probab=96.24 E-value=0.02 Score=52.80 Aligned_cols=91 Identities=13% Similarity=0.197 Sum_probs=53.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC-CCHHHHHHHHHHHhCCCC-----CC-CCCH------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT-PDYRKIEDQFAFDLGMKL-----DL-NDST------ 169 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~-~~~~------ 169 (309)
.-..++|+|.+|+|||||+..++.... .+.++...+... ..+.++..+++....... .. +...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 447899999999999999999887543 233344445543 345666666665432110 00 1111
Q ss_pred HHHHHHHHHHH-hcCCeEEEEEeCCCCcc
Q 043850 170 LERTDGLRKRL-NKEMRVLIILDNIWTKL 197 (309)
Q Consensus 170 ~~~~~~l~~~L-~~~~r~LlVlDdv~~~~ 197 (309)
....-.+.+++ ..++.+||++||+....
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~A 254 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRYA 254 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHHH
Confidence 11233344555 22358999999995543
No 446
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.23 E-value=0.0037 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997654
No 447
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.23 E-value=0.1 Score=46.77 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=26.8
Q ss_pred HHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 93 QVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 93 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
++|... .+.-+..+.++|+.|+|||++|..++...-
T Consensus 11 ~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 11 RQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred HHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 344433 233356788999999999999999988764
No 448
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.23 E-value=0.0036 Score=48.63 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998764
No 449
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.21 E-value=0.0045 Score=50.73 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+..+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998754
No 450
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.21 E-value=0.0091 Score=57.45 Aligned_cols=49 Identities=22% Similarity=0.282 Sum_probs=37.7
Q ss_pred cccccchHHHHHHHHHHhhc--CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 82 YEIFDSRKEIFQVVMESLKD--DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
++..+.|.+..+.|.+.... ....+|.|+|++|+||||+|+.++.....
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 34556788877777766532 34568999999999999999999988764
No 451
>PRK13948 shikimate kinase; Provisional
Probab=96.21 E-value=0.005 Score=50.22 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
....|.++|+.|+||||+++.++....
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998764
No 452
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.19 E-value=0.049 Score=44.03 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=27.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEE
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAE 141 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 141 (309)
.-.+++|.|++|.|||||...|+--.... .+.+|++
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~ 59 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILIN 59 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEc
Confidence 34789999999999999999998643321 3677774
No 453
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.19 E-value=0.012 Score=52.28 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=26.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
+++.+.|-||+||||+|...+-....++ ..++-++...
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dp 39 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDP 39 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESST
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCC
Confidence 6899999999999999988877665432 2344444433
No 454
>PLN02200 adenylate kinase family protein
Probab=96.19 E-value=0.0052 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.+.+|.|.|++|+||||+|+.++...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999998754
No 455
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.18 E-value=0.0086 Score=50.48 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~ 126 (309)
...++.|.|+.|.||||+.+.+..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347889999999999999999877
No 456
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.18 E-value=0.017 Score=49.96 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=51.4
Q ss_pred CcEEEEEeCCCCcHHHHH-HHHHHHhhcccCCCeE-EEEEecCCC-CHHHHHHHHHHHhCCCC------CCCCCHHH---
Q 043850 104 LKVIGVYGMGGVGKTTLV-KQVAMKVMEDKLFDKV-VMAEVTQTP-DYRKIEDQFAFDLGMKL------DLNDSTLE--- 171 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~--- 171 (309)
-+-++|.|.+|+|||+|| ..+.++. .-+.+ +++-+++.. ...++..++...-.... ..+.....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 367899999999999996 5555442 23443 677777664 45666666654321110 00111111
Q ss_pred ---HHHHHHHHHh-cCCeEEEEEeCCCCcc
Q 043850 172 ---RTDGLRKRLN-KEMRVLIILDNIWTKL 197 (309)
Q Consensus 172 ---~~~~l~~~L~-~~~r~LlVlDdv~~~~ 197 (309)
..-.+.+++. .++.+||++||+....
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A 174 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLSKQA 174 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChHHHH
Confidence 1233444442 2357999999995543
No 457
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.18 E-value=0.047 Score=52.11 Aligned_cols=114 Identities=23% Similarity=0.221 Sum_probs=63.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc-c--CCC---------------eEEEEEecC----CCCH------------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED-K--LFD---------------KVVMAEVTQ----TPDY------------ 148 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~--~f~---------------~~~wv~~~~----~~~~------------ 148 (309)
.-.+++|+|+.|+|||||.+.++...... . .|+ .+.|+.-.. ..++
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 115 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQ 115 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccch
Confidence 34789999999999999999998654311 0 011 122332110 0111
Q ss_pred --HHHHHHHHHHhCCCCCC-----CCCH-HHHHHHHHHHHhcCCeEEEEEeCCCCccC------------CCCCCCcEEE
Q 043850 149 --RKIEDQFAFDLGMKLDL-----NDST-LERTDGLRKRLNKEMRVLIILDNIWTKLE------------KDDQERCTIV 208 (309)
Q Consensus 149 --~~~~~~i~~~l~~~~~~-----~~~~-~~~~~~l~~~L~~~~r~LlVlDdv~~~~~------------~~~~~gs~il 208 (309)
.+...+++..++..... ..+. +...-.+...|..+ +-+|+||+..+..+ .....|..||
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~-p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii 194 (510)
T PRK15439 116 ASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRD-SRILILDEPTASLTPAETERLFSRIRELLAQGVGIV 194 (510)
T ss_pred HHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcC-CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 12234455666654221 1121 22233344455554 68999999987776 1122466799
Q ss_pred EeeCCcccc
Q 043850 209 LISRSRDLL 217 (309)
Q Consensus 209 iTtR~~~v~ 217 (309)
++|.+...+
T Consensus 195 ivtHd~~~~ 203 (510)
T PRK15439 195 FISHKLPEI 203 (510)
T ss_pred EEeCCHHHH
Confidence 999987643
No 458
>PRK13946 shikimate kinase; Provisional
Probab=96.18 E-value=0.0051 Score=50.29 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+.|.++|+.|+||||+++.++....
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998874
No 459
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.17 E-value=0.013 Score=52.12 Aligned_cols=42 Identities=31% Similarity=0.498 Sum_probs=30.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPD 147 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 147 (309)
.+++.+.|.||+||||+|-..+-...... ..++-|+.....+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCc
Confidence 47899999999999999999777766552 4466665544333
No 460
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.17 E-value=0.0071 Score=51.60 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=23.1
Q ss_pred EEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEec
Q 043850 109 VYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT 143 (309)
Q Consensus 109 I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 143 (309)
|+|++|+||||+++.+.+.....+ ..++-|++.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEcc
Confidence 689999999999999999887652 334555543
No 461
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.16 E-value=0.018 Score=51.49 Aligned_cols=39 Identities=31% Similarity=0.607 Sum_probs=30.3
Q ss_pred HHHHHHhh--cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 93 QVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 93 ~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
..|++.+. ..+..+|+|.|.+|+|||||+..+.......
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443 3567899999999999999999998887754
No 462
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.16 E-value=0.0049 Score=48.92 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=26.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEE
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVM 139 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~w 139 (309)
+++|+|+.|+|||||+..+....+.+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 57899999999999999999987654 3444333
No 463
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.15 E-value=0.013 Score=48.54 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=27.6
Q ss_pred HHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 97 ESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 97 ~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
..+..++-+++.|.|.+|+||||++..+.......
T Consensus 11 ~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 11 RAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 33334455789999999999999999988877764
No 464
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=96.15 E-value=0.031 Score=52.09 Aligned_cols=93 Identities=18% Similarity=0.172 Sum_probs=58.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCC--eEEEEEecCCC-CHHHHHHHHHHHhCCCCC------CCCCH-----
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFD--KVVMAEVTQTP-DYRKIEDQFAFDLGMKLD------LNDST----- 169 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~~~----- 169 (309)
-+-++|.|-.|+|||+|+..++++....+.+. .++++-+++.. .+.+++.++...=..... .+...
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 36789999999999999999998765421121 56777777654 456666666543222110 01111
Q ss_pred -HHHHHHHHHHHh--cCCeEEEEEeCCCCc
Q 043850 170 -LERTDGLRKRLN--KEMRVLIILDNIWTK 196 (309)
Q Consensus 170 -~~~~~~l~~~L~--~~~r~LlVlDdv~~~ 196 (309)
.-..-.+.++++ .++++||++||+...
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 122334666776 356899999999553
No 465
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.14 E-value=0.0045 Score=53.22 Aligned_cols=25 Identities=44% Similarity=0.650 Sum_probs=22.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.|.++|++|+||||+|+.+......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987754
No 466
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.12 E-value=0.012 Score=51.00 Aligned_cols=115 Identities=17% Similarity=0.208 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCH
Q 043850 90 EIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDST 169 (309)
Q Consensus 90 ~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 169 (309)
+.++.|..++ .....+|.|.|..|+||||++..+....... -..++.+ .+..... +.. ..++..... ..
T Consensus 67 ~~~~~l~~~~-~~~~GlilisG~tGSGKTT~l~all~~i~~~--~~~iiti--Edp~E~~--~~~-~~q~~v~~~---~~ 135 (264)
T cd01129 67 ENLEIFRKLL-EKPHGIILVTGPTGSGKTTTLYSALSELNTP--EKNIITV--EDPVEYQ--IPG-INQVQVNEK---AG 135 (264)
T ss_pred HHHHHHHHHH-hcCCCEEEEECCCCCcHHHHHHHHHhhhCCC--CCeEEEE--CCCceec--CCC-ceEEEeCCc---CC
Confidence 3344444444 4445789999999999999999887665321 1122222 2211100 000 011111111 11
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCccC-----CCCCCCcEEEEeeCCccc
Q 043850 170 LERTDGLRKRLNKEMRVLIILDNIWTKLE-----KDDQERCTIVLISRSRDL 216 (309)
Q Consensus 170 ~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-----~~~~~gs~iliTtR~~~v 216 (309)
......++..|+.. +=.|+++++.+... .....|..++-|....+.
T Consensus 136 ~~~~~~l~~~lR~~-PD~i~vgEiR~~e~a~~~~~aa~tGh~v~tTlHa~~~ 186 (264)
T cd01129 136 LTFARGLRAILRQD-PDIIMVGEIRDAETAEIAVQAALTGHLVLSTLHTNDA 186 (264)
T ss_pred cCHHHHHHHHhccC-CCEEEeccCCCHHHHHHHHHHHHcCCcEEEEeccCCH
Confidence 23455666677665 78889999988764 223344445555555543
No 467
>PRK06620 hypothetical protein; Validated
Probab=96.10 E-value=0.0048 Score=51.79 Aligned_cols=24 Identities=25% Similarity=0.109 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+.+.|+|++|+|||+|++.+++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 668999999999999999877654
No 468
>PTZ00185 ATPase alpha subunit; Provisional
Probab=96.10 E-value=0.078 Score=49.83 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=54.4
Q ss_pred CcEEEEEeCCCCcHHHHH-HHHHHHhhc-----ccCCCeEEEEEecCCCCHHHHHHHHHHHhC-CCCC------CCCCHH
Q 043850 104 LKVIGVYGMGGVGKTTLV-KQVAMKVME-----DKLFDKVVMAEVTQTPDYRKIEDQFAFDLG-MKLD------LNDSTL 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~------~~~~~~ 170 (309)
-.-++|.|-.|+|||+|| ..+.++... .+.-..++++-+++..+...-+.+.++.-+ .... .+....
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 367899999999999997 566776532 123457888888887643332444444433 1111 011111
Q ss_pred H------HHHHHHHHH-hcCCeEEEEEeCCCCc
Q 043850 171 E------RTDGLRKRL-NKEMRVLIILDNIWTK 196 (309)
Q Consensus 171 ~------~~~~l~~~L-~~~~r~LlVlDdv~~~ 196 (309)
. ..-.+-+++ ..++.+|+|+||+...
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1 222344444 2235799999999554
No 469
>PRK04182 cytidylate kinase; Provisional
Probab=96.10 E-value=0.0055 Score=49.61 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+|.|.|+.|+||||+|+.++....
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998754
No 470
>PRK13695 putative NTPase; Provisional
Probab=96.10 E-value=0.0094 Score=48.19 Aligned_cols=34 Identities=38% Similarity=0.439 Sum_probs=25.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEE
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMA 140 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 140 (309)
.|+|+|.+|+|||||++.+++..... .+...-|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~-G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEE-GYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEE
Confidence 47899999999999999998876542 24433343
No 471
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.10 E-value=0.026 Score=53.73 Aligned_cols=56 Identities=25% Similarity=0.312 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCCccC----------CCCCCCcEEEEeeCCccccccccCCCceEecC
Q 043850 171 ERTDGLRKRLNKEMRVLIILDNIWTKLE----------KDDQERCTIVLISRSRDLLCNDMNSQKDFWID 230 (309)
Q Consensus 171 ~~~~~l~~~L~~~~r~LlVlDdv~~~~~----------~~~~~gs~iliTtR~~~v~~~~~~~~~~~~l~ 230 (309)
.+...|.+.|-.+ +=+|+||.--+..+ ....+| .+||.|.++.+... -+.+++.++
T Consensus 159 r~Rv~LA~aL~~~-pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~--V~t~I~~ld 224 (530)
T COG0488 159 RRRVALARALLEE-PDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDN--VATHILELD 224 (530)
T ss_pred HHHHHHHHHHhcC-CCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHH--HhhheEEec
Confidence 3444566666665 78999999988777 345556 69999999977542 233455555
No 472
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.09 E-value=0.024 Score=48.83 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
+|+|.|.+|+||||+++.+.......
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999998876543
No 473
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.08 E-value=0.0068 Score=48.19 Aligned_cols=28 Identities=32% Similarity=0.635 Sum_probs=25.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.++++|+|..|+|||||...+....+.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 4789999999999999999999988876
No 474
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.08 E-value=0.0056 Score=45.12 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVA 125 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~ 125 (309)
-..++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 475
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=96.08 E-value=0.025 Score=52.37 Aligned_cols=93 Identities=20% Similarity=0.181 Sum_probs=58.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhccc--CCC---------eEEEEEecCCCCHHHHHHHHHHHhC-CCCCC------
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDK--LFD---------KVVMAEVTQTPDYRKIEDQFAFDLG-MKLDL------ 165 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~------ 165 (309)
-+-++|.|-+|+|||+|+..++++..... -.+ .++++-+++.....+.+.+.+..-+ .....
T Consensus 141 GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 141 GQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLA 220 (466)
T ss_pred CCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECC
Confidence 46789999999999999999998875200 011 5677778877666666666665544 21110
Q ss_pred CCCHH------HHHHHHHHHHh--cCCeEEEEEeCCCCc
Q 043850 166 NDSTL------ERTDGLRKRLN--KEMRVLIILDNIWTK 196 (309)
Q Consensus 166 ~~~~~------~~~~~l~~~L~--~~~r~LlVlDdv~~~ 196 (309)
+...- ...-.+.++++ .++.+||++||+...
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 11111 12334566665 346899999999543
No 476
>PRK14532 adenylate kinase; Provisional
Probab=96.06 E-value=0.0052 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q 043850 107 IGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 107 i~I~G~~GiGKTtLa~~v~~~~ 128 (309)
|.|.|++|+||||+|+.++...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999998654
No 477
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.06 E-value=0.037 Score=44.56 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=62.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeE--EEEEecCCCCHHHHHHHHH---HHhCCC--CCCCCC------HH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKV--VMAEVTQTPDYRKIEDQFA---FDLGMK--LDLNDS------TL 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~--~wv~~~~~~~~~~~~~~i~---~~l~~~--~~~~~~------~~ 170 (309)
...|-|++-.|.||||+|..++.+..... +... -|+.-.........+..+. .+.+.. ...... ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHG-KKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 36788888899999999999888776542 2221 2333332233334443320 001111 001011 12
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCcc
Q 043850 171 ERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 171 ~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~ 215 (309)
+.....++.+..+.-=|||||.+-.... .....+..+|+|-|+..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 2344455666555456999999854322 45566778999999873
No 478
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.06 E-value=0.034 Score=53.14 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=41.1
Q ss_pred cccccchHHHHHHHHHHhh--cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 043850 82 YEIFDSRKEIFQVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT 145 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 145 (309)
...++|....+.++++.+. ......|.|+|..|+||+.||+.+....... -...+.+++..-
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~--~~pfv~inca~~ 266 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRG--KKPFLALNCASI 266 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeccccC
Confidence 3468888887777776663 2233568899999999999999976543221 123345665543
No 479
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.05 E-value=0.061 Score=50.04 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=37.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDL 159 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 159 (309)
-.++.|.|.+|+|||++|..++....... -..++|+++. .+..++...++...
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~-g~~v~~fSlE--m~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALRE-GKPVLFFSLE--MSAEQLGERLLASK 246 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHHHHHH
Confidence 36889999999999999999997664322 2345666643 46677777666543
No 480
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.04 E-value=0.0065 Score=48.93 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..|.|+|+.|+||||+|+.++....
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999998764
No 481
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.04 E-value=0.0056 Score=48.93 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=17.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHH
Q 043850 107 IGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 107 i~I~G~~GiGKTtLa~~v~~~ 127 (309)
|+|.|..|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999976
No 482
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=96.04 E-value=0.046 Score=44.85 Aligned_cols=29 Identities=31% Similarity=0.601 Sum_probs=25.4
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.+-.+++|.|..|.||||+.+.++.-...
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhccC
Confidence 45589999999999999999999987654
No 483
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.03 E-value=0.021 Score=47.30 Aligned_cols=27 Identities=22% Similarity=0.403 Sum_probs=23.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.+|+|.|+.|+||||+++.+.+.....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999877543
No 484
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=96.02 E-value=0.016 Score=51.68 Aligned_cols=92 Identities=21% Similarity=0.254 Sum_probs=60.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHHHHHh------------CCCCCC----C
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQFAFDL------------GMKLDL----N 166 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l------------~~~~~~----~ 166 (309)
-.-|++.|-+|+|||.|.+.+.++.... |=...+|.-+++.. .-.+++.++.+.- +.++.. .
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~Nia~~-h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RVa 225 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVA 225 (468)
T ss_pred CceeeeeccCCccceeeHHHHHHHHHHH-cCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeeh
Confidence 3678999999999999999999988764 45578888888764 3466777776542 111111 0
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 167 DSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 167 ~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
...-.+++..++.. ++.+||.+||+....+
T Consensus 226 ltGlT~AEyfRD~~--gqdVLlFIDNIfRftQ 255 (468)
T COG0055 226 LTGLTMAEYFRDEE--GQDVLLFIDNIFRFTQ 255 (468)
T ss_pred hhhhhHHHHhhccc--CCeEEEEehhhhHHhh
Confidence 11122333444332 3479999999966544
No 485
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.02 E-value=0.0057 Score=50.22 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHh
Q 043850 107 IGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 107 i~I~G~~GiGKTtLa~~v~~~~ 128 (309)
|.|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998764
No 486
>PRK15453 phosphoribulokinase; Provisional
Probab=96.02 E-value=0.0079 Score=52.14 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=24.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
....+|+|.|.+|+||||+|+.+.+...
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3568999999999999999999987654
No 487
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.02 E-value=0.0064 Score=48.79 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=21.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+|.|.|..|+||||+|+.+.+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 789999999999999999987643
No 488
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.01 E-value=0.055 Score=51.93 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-.+++|+|..|+|||||.+.++....
T Consensus 26 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 26 GGNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346899999999999999999987543
No 489
>PRK08760 replicative DNA helicase; Provisional
Probab=96.00 E-value=0.063 Score=50.67 Aligned_cols=52 Identities=13% Similarity=0.060 Sum_probs=35.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFD 158 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 158 (309)
-.++.|-|.+|+|||++|..++.....+... .++++++ ..+..++...++..
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~-~V~~fSl--EMs~~ql~~Rl~a~ 280 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKK-GVAVFSM--EMSASQLAMRLISS 280 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCC-ceEEEec--cCCHHHHHHHHHHh
Confidence 4688999999999999999999776433223 3444443 34455566555544
No 490
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.0056 Score=48.72 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHH
Q 043850 106 VIGVYGMGGVGKTTLVKQVA 125 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~ 125 (309)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 491
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.00 E-value=0.0067 Score=49.24 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.+++|+|.+|+|||||++.++.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 57899999999999999999987653
No 492
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.00 E-value=0.045 Score=46.28 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=63.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEec-------------------CCCCHHHH------------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT-------------------QTPDYRKI------------ 151 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-------------------~~~~~~~~------------ 151 (309)
.-.+.++.|..|.||||.-+.+..-.... -..+-|-.-. ...++.+-
T Consensus 27 ~G~i~GllG~NGAGKTTtfRmILglle~~--~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~ 104 (300)
T COG4152 27 PGEIFGLLGPNGAGKTTTFRMILGLLEPT--EGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPK 104 (300)
T ss_pred CCeEEEeecCCCCCccchHHHHhccCCcc--CceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcH
Confidence 45799999999999999999998866542 1234444211 11122221
Q ss_pred ------HHHHHHHhCCCCCC-------CCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC------------CCCCCCcE
Q 043850 152 ------EDQFAFDLGMKLDL-------NDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE------------KDDQERCT 206 (309)
Q Consensus 152 ------~~~i~~~l~~~~~~-------~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~------------~~~~~gs~ 206 (309)
+...++++...... +...++.++.+...+ .+ +=|||||.-.+..+ .....|..
T Consensus 105 ~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisavi-He-PeLlILDEPFSGLDPVN~elLk~~I~~lk~~Gat 182 (300)
T COG4152 105 AEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVI-HE-PELLILDEPFSGLDPVNVELLKDAIFELKEEGAT 182 (300)
T ss_pred HHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHh-cC-CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCE
Confidence 22233444333222 122233444444444 33 78999999988777 34567888
Q ss_pred EEEeeCCc
Q 043850 207 IVLISRSR 214 (309)
Q Consensus 207 iliTtR~~ 214 (309)
||+.|..-
T Consensus 183 IifSsH~M 190 (300)
T COG4152 183 IIFSSHRM 190 (300)
T ss_pred EEEecchH
Confidence 88877654
No 493
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.00 E-value=0.0065 Score=50.65 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.4
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.....|.|+|++|+|||||+..+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35678999999999999999998754
No 494
>PRK13976 thymidylate kinase; Provisional
Probab=95.99 E-value=0.031 Score=46.73 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.|+|-|+-|+||||+++.++......
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~ 27 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDI 27 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 58899999999999999999988764
No 495
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.99 E-value=0.016 Score=51.32 Aligned_cols=39 Identities=21% Similarity=0.492 Sum_probs=29.7
Q ss_pred HHHHHHhh--cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 93 QVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 93 ~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
..+++.+. .....+|+|.|.+|+|||||+..+.......
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444442 3467899999999999999999998876654
No 496
>PRK14531 adenylate kinase; Provisional
Probab=95.98 E-value=0.0072 Score=49.35 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..|.|+|++|+||||+++.++....
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999988754
No 497
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.0078 Score=47.60 Aligned_cols=47 Identities=28% Similarity=0.367 Sum_probs=32.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMK 162 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 162 (309)
..+++|+|.+|+||||+.+.+.... .. +.. .+..++.-+++...|..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~--~~i---------vNyG~~Mle~A~k~glv 50 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VK--HKI---------VNYGDLMLEIAKKKGLV 50 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hh--cee---------eeHhHHHHHHHHHhCCc
Confidence 5789999999999999999887766 11 111 13455666666666554
No 498
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.97 E-value=0.016 Score=46.41 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=27.4
Q ss_pred hcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 100 KDDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 100 ~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
...+..+|-+.|.+|+||||+|..+.......
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 34556799999999999999999999988765
No 499
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.96 E-value=0.056 Score=52.49 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+-..++|+|..|+|||||++.+.....
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 447899999999999999999987654
No 500
>PRK13409 putative ATPase RIL; Provisional
Probab=95.95 E-value=0.06 Score=52.27 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=67.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEE--E---ecCC------CCHHH-------------HHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMA--E---VTQT------PDYRK-------------IEDQFAFD 158 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv--~---~~~~------~~~~~-------------~~~~i~~~ 158 (309)
.-.+++|+|..|+|||||++.++...... .+.+++ . +.+. .++.+ ...++++.
T Consensus 364 ~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~ 440 (590)
T PRK13409 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKP 440 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHH
Confidence 34689999999999999999998765321 122211 1 1121 12222 12334444
Q ss_pred hCCCCC-----CCCCHHH-HHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCcccccc
Q 043850 159 LGMKLD-----LNDSTLE-RTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSRDLLCN 219 (309)
Q Consensus 159 l~~~~~-----~~~~~~~-~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~~v~~~ 219 (309)
++.... ...+..+ ..-.+...|..+ +-+++||+-.+..+ .....|..||++|.+...+..
T Consensus 441 l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~-p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~ 519 (590)
T PRK13409 441 LQLERLLDKNVKDLSGGELQRVAIAACLSRD-ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDY 519 (590)
T ss_pred CCCHHHHhCCcccCCHHHHHHHHHHHHHhcC-CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 444211 0122222 233344555554 78999999877766 122346678899988765432
Q ss_pred ccCCCceEecC
Q 043850 220 DMNSQKDFWID 230 (309)
Q Consensus 220 ~~~~~~~~~l~ 230 (309)
-.++++.+.
T Consensus 520 --~aDrvivl~ 528 (590)
T PRK13409 520 --ISDRLMVFE 528 (590)
T ss_pred --hCCEEEEEc
Confidence 234455555
Done!