Query 043850
Match_columns 309
No_of_seqs 333 out of 2210
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 15:15:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.7E-35 1.3E-39 278.9 11.5 214 86-306 131-376 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 6.1E-31 2.1E-35 271.1 20.9 230 78-308 119-379 (1249)
3 1z6t_A APAF-1, apoptotic prote 100.0 1.3E-28 4.6E-33 236.0 19.7 227 78-308 119-379 (591)
4 1vt4_I APAF-1 related killer D 100.0 8.5E-29 2.9E-33 242.2 8.9 206 85-308 130-370 (1221)
5 2qen_A Walker-type ATPase; unk 99.6 3E-14 1E-18 127.0 14.5 178 77-263 6-249 (350)
6 2fna_A Conserved hypothetical 99.5 1.1E-12 3.7E-17 117.1 16.0 175 78-264 8-254 (357)
7 1w5s_A Origin recognition comp 99.5 2.6E-12 8.7E-17 117.2 17.3 180 82-261 21-267 (412)
8 2qby_A CDC6 homolog 1, cell di 99.3 2E-11 6.9E-16 110.0 15.6 176 82-257 19-242 (386)
9 2qby_B CDC6 homolog 3, cell di 99.3 9.8E-11 3.3E-15 105.7 19.0 195 83-278 20-270 (384)
10 2chg_A Replication factor C sm 99.3 5E-11 1.7E-15 98.8 15.1 121 79-215 13-143 (226)
11 1njg_A DNA polymerase III subu 99.3 4.9E-11 1.7E-15 100.1 14.0 177 79-263 19-231 (250)
12 2v1u_A Cell division control p 99.3 1.5E-10 5.1E-15 104.3 16.6 134 82-215 18-178 (387)
13 1fnn_A CDC6P, cell division co 99.3 3E-10 1E-14 102.6 18.3 133 82-215 16-170 (389)
14 1sxj_B Activator 1 37 kDa subu 99.0 2E-09 6.7E-14 94.7 12.3 168 79-261 17-211 (323)
15 3te6_A Regulatory protein SIR3 98.9 1.4E-08 4.9E-13 88.9 13.3 115 84-198 21-146 (318)
16 1iqp_A RFCS; clamp loader, ext 98.9 3.4E-09 1.2E-13 93.3 9.2 167 79-261 21-213 (327)
17 1jbk_A CLPB protein; beta barr 98.8 1.7E-08 5.7E-13 81.3 10.2 50 81-130 20-69 (195)
18 2chq_A Replication factor C sm 98.8 2.9E-08 1E-12 86.9 11.0 163 79-259 13-203 (319)
19 1jr3_A DNA polymerase III subu 98.8 6.8E-08 2.3E-12 86.6 12.5 51 80-130 13-64 (373)
20 3h4m_A Proteasome-activating n 98.8 1.5E-07 5.2E-12 81.2 14.1 50 80-129 14-76 (285)
21 2p65_A Hypothetical protein PF 98.7 3.6E-08 1.2E-12 79.1 7.1 51 80-130 19-69 (187)
22 1hqc_A RUVB; extended AAA-ATPa 98.7 7.3E-07 2.5E-11 78.3 16.1 50 80-129 9-63 (324)
23 1sxj_D Activator 1 41 kDa subu 98.6 2.9E-07 1E-11 81.8 10.4 174 79-259 33-234 (353)
24 1sxj_A Activator 1 95 kDa subu 98.5 9E-07 3.1E-11 83.0 13.4 65 79-148 35-116 (516)
25 3b9p_A CG5977-PA, isoform A; A 98.5 2.3E-06 8E-11 74.1 14.9 95 81-196 19-125 (297)
26 3pvs_A Replication-associated 98.5 1.8E-06 6.2E-11 79.3 14.7 52 79-130 22-76 (447)
27 2qz4_A Paraplegin; AAA+, SPG7, 98.5 3.3E-06 1.1E-10 71.7 15.4 49 81-129 4-64 (262)
28 3bos_A Putative DNA replicatio 98.5 4.3E-07 1.5E-11 75.9 9.3 62 81-144 26-90 (242)
29 3vfd_A Spastin; ATPase, microt 98.5 5.6E-06 1.9E-10 74.8 16.9 51 79-129 111-173 (389)
30 3ec2_A DNA replication protein 98.5 5.9E-07 2E-11 72.0 9.1 110 88-215 19-144 (180)
31 3d8b_A Fidgetin-like protein 1 98.5 2.3E-06 8E-11 76.4 13.6 49 81-129 82-142 (357)
32 4b4t_L 26S protease subunit RP 98.5 8.8E-06 3E-10 74.1 17.2 94 83-197 181-287 (437)
33 4b4t_I 26S protease regulatory 98.5 9.8E-06 3.3E-10 73.2 17.2 95 82-197 181-288 (437)
34 4b4t_J 26S protease regulatory 98.4 4.7E-06 1.6E-10 74.9 15.1 94 83-197 148-254 (405)
35 3eie_A Vacuolar protein sortin 98.4 2.4E-06 8.2E-11 75.2 13.1 96 80-196 15-122 (322)
36 1xwi_A SKD1 protein; VPS4B, AA 98.4 1.6E-05 5.5E-10 69.9 18.2 96 81-196 10-117 (322)
37 1d2n_A N-ethylmaleimide-sensit 98.4 2.3E-06 7.8E-11 73.4 12.0 47 83-129 33-89 (272)
38 2w58_A DNAI, primosome compone 98.4 1.1E-06 3.8E-11 71.7 8.9 108 88-214 34-159 (202)
39 4b4t_M 26S protease regulatory 98.4 5.4E-06 1.8E-10 75.4 13.5 50 82-131 180-242 (434)
40 3u61_B DNA polymerase accessor 98.4 1.7E-06 5.9E-11 76.0 9.9 114 79-215 22-147 (324)
41 3cf0_A Transitional endoplasmi 98.4 1.7E-05 5.7E-10 69.0 16.1 49 81-129 13-74 (301)
42 3n70_A Transport activator; si 98.3 4.7E-07 1.6E-11 70.0 5.2 46 84-129 2-49 (145)
43 1sxj_E Activator 1 40 kDa subu 98.3 3.9E-06 1.3E-10 74.6 11.4 50 79-128 10-60 (354)
44 4b4t_H 26S protease regulatory 98.3 1.3E-05 4.3E-10 73.2 14.6 94 83-197 209-315 (467)
45 4b4t_K 26S protease regulatory 98.3 1.3E-05 4.5E-10 72.8 14.5 93 82-195 171-276 (428)
46 1sxj_C Activator 1 40 kDa subu 98.3 7.2E-06 2.5E-10 72.6 12.6 52 79-130 21-72 (340)
47 1lv7_A FTSH; alpha/beta domain 98.3 9.3E-06 3.2E-10 68.8 12.7 50 80-129 9-70 (257)
48 2zan_A Vacuolar protein sortin 98.3 2.3E-05 7.8E-10 72.1 15.7 48 81-128 132-191 (444)
49 3syl_A Protein CBBX; photosynt 98.2 2.9E-06 1E-10 73.9 8.5 48 84-131 32-94 (309)
50 2qp9_X Vacuolar protein sortin 98.2 9.2E-06 3.2E-10 72.4 11.8 49 81-129 49-109 (355)
51 3uk6_A RUVB-like 2; hexameric 98.2 4.7E-05 1.6E-09 67.9 16.1 49 82-130 43-96 (368)
52 3pfi_A Holliday junction ATP-d 98.2 2.3E-05 7.8E-10 69.1 13.7 51 79-129 25-80 (338)
53 2z4s_A Chromosomal replication 98.2 9.1E-06 3.1E-10 74.6 11.2 116 83-214 105-237 (440)
54 3hu3_A Transitional endoplasmi 98.2 3.7E-05 1.3E-09 71.4 15.0 47 82-128 203-262 (489)
55 1qvr_A CLPB protein; coiled co 98.1 9.5E-06 3.3E-10 80.7 11.1 103 81-197 168-276 (854)
56 3pxg_A Negative regulator of g 98.1 1.1E-05 3.9E-10 74.6 10.5 50 81-130 178-227 (468)
57 1r6b_X CLPA protein; AAA+, N-t 98.1 4.7E-05 1.6E-09 74.7 15.2 102 81-196 184-290 (758)
58 2ce7_A Cell division protein F 98.1 5.9E-05 2E-09 69.6 14.7 50 81-130 14-75 (476)
59 1a5t_A Delta prime, HOLB; zinc 98.1 5.8E-05 2E-09 66.6 14.2 43 88-130 7-50 (334)
60 3co5_A Putative two-component 98.1 1.3E-06 4.4E-11 67.4 2.9 46 83-128 4-51 (143)
61 1l8q_A Chromosomal replication 98.1 1.3E-05 4.5E-10 70.4 9.4 114 82-214 10-141 (324)
62 2r62_A Cell division protease 98.0 4.7E-06 1.6E-10 71.1 4.9 50 81-130 9-70 (268)
63 4fcw_A Chaperone protein CLPB; 98.0 1.5E-05 5.2E-10 69.3 7.4 108 83-198 17-133 (311)
64 2gno_A DNA polymerase III, gam 97.9 6.1E-05 2.1E-09 65.6 10.8 109 87-214 1-122 (305)
65 3pxi_A Negative regulator of g 97.9 4E-05 1.4E-09 75.2 10.1 49 81-129 178-226 (758)
66 3cf2_A TER ATPase, transitiona 97.9 6.5E-05 2.2E-09 73.4 11.0 94 83-197 204-310 (806)
67 2kjq_A DNAA-related protein; s 97.9 1.6E-05 5.4E-10 61.7 5.3 39 103-143 35-73 (149)
68 3hr8_A Protein RECA; alpha and 97.9 8.1E-05 2.8E-09 66.0 10.4 85 104-195 61-150 (356)
69 3io5_A Recombination and repai 97.9 0.00011 3.9E-09 63.6 10.9 88 105-197 29-124 (333)
70 1ixz_A ATP-dependent metallopr 97.9 0.00015 5.1E-09 61.2 11.6 49 81-129 14-74 (254)
71 2w0m_A SSO2452; RECA, SSPF, un 97.8 9.4E-05 3.2E-09 61.2 9.6 106 104-214 23-168 (235)
72 2cvh_A DNA repair and recombin 97.8 0.00017 5.7E-09 59.2 10.8 86 104-196 20-117 (220)
73 2dhr_A FTSH; AAA+ protein, hex 97.8 0.00043 1.5E-08 64.2 14.6 49 81-129 29-89 (499)
74 1n0w_A DNA repair protein RAD5 97.8 0.00017 5.9E-09 60.1 10.4 92 104-196 24-131 (243)
75 2zr9_A Protein RECA, recombina 97.7 0.00014 5E-09 64.4 10.1 86 104-196 61-151 (349)
76 1xp8_A RECA protein, recombina 97.7 0.00024 8.1E-09 63.4 10.4 85 104-195 74-163 (366)
77 1v5w_A DMC1, meiotic recombina 97.6 0.00047 1.6E-08 61.0 11.5 92 103-195 121-230 (343)
78 3t15_A Ribulose bisphosphate c 97.6 6.7E-05 2.3E-09 64.9 5.9 28 103-130 35-62 (293)
79 1ypw_A Transitional endoplasmi 97.6 9.9E-05 3.4E-09 72.8 7.6 48 82-129 203-263 (806)
80 1u94_A RECA protein, recombina 97.6 0.00026 9E-09 62.9 9.7 86 103-195 62-152 (356)
81 1iy2_A ATP-dependent metallopr 97.6 0.00039 1.3E-08 59.5 10.5 49 81-129 38-98 (278)
82 2vhj_A Ntpase P4, P4; non- hyd 97.6 4.3E-05 1.5E-09 66.5 4.4 71 104-197 123-195 (331)
83 2z43_A DNA repair and recombin 97.6 0.0004 1.4E-08 61.0 10.4 91 104-195 107-214 (324)
84 2i1q_A DNA repair and recombin 97.6 0.00042 1.4E-08 60.7 10.4 91 104-195 98-215 (322)
85 3pxi_A Negative regulator of g 97.6 7.2E-05 2.4E-09 73.4 6.0 60 83-144 491-559 (758)
86 2x8a_A Nuclear valosin-contain 97.5 0.00041 1.4E-08 59.4 9.1 48 82-129 9-69 (274)
87 2qgz_A Helicase loader, putati 97.4 0.00024 8E-09 62.0 7.1 53 88-142 133-189 (308)
88 2c9o_A RUVB-like 1; hexameric 97.4 0.00027 9.2E-09 65.1 7.0 49 82-130 36-89 (456)
89 4a74_A DNA repair and recombin 97.4 0.00096 3.3E-08 54.9 9.6 91 104-195 25-136 (231)
90 1ofh_A ATP-dependent HSL prote 97.3 0.00023 7.7E-09 61.6 5.6 47 83-129 15-75 (310)
91 1in4_A RUVB, holliday junction 97.3 0.0002 6.8E-09 63.1 5.3 51 80-130 22-77 (334)
92 3lda_A DNA repair protein RAD5 97.3 0.0014 4.7E-08 59.2 10.7 92 104-196 178-285 (400)
93 1rz3_A Hypothetical protein rb 97.3 0.00036 1.2E-08 56.7 6.3 44 87-130 2-48 (201)
94 2dr3_A UPF0273 protein PH0284; 97.3 0.0016 5.5E-08 54.2 10.4 107 104-215 23-174 (247)
95 3bh0_A DNAB-like replicative h 97.3 0.0013 4.6E-08 57.3 10.1 49 104-156 68-116 (315)
96 2b8t_A Thymidine kinase; deoxy 97.3 0.00012 4.2E-09 60.6 3.2 109 103-216 11-128 (223)
97 2px0_A Flagellar biosynthesis 97.3 0.0016 5.5E-08 56.3 10.1 86 103-192 104-190 (296)
98 1r6b_X CLPA protein; AAA+, N-t 97.2 0.00044 1.5E-08 67.8 7.0 105 83-198 458-571 (758)
99 1qvr_A CLPB protein; coiled co 97.2 0.00023 8E-09 70.7 5.0 59 84-144 559-626 (854)
100 3c8u_A Fructokinase; YP_612366 97.2 0.00047 1.6E-08 56.3 5.7 42 89-130 5-48 (208)
101 4a1f_A DNAB helicase, replicat 97.2 0.0033 1.1E-07 55.3 11.2 89 104-196 46-168 (338)
102 3dm5_A SRP54, signal recogniti 97.1 0.0031 1.1E-07 57.4 11.1 29 103-131 99-127 (443)
103 2bjv_A PSP operon transcriptio 97.1 0.00052 1.8E-08 58.2 5.5 62 82-145 5-68 (265)
104 3cmu_A Protein RECA, recombina 97.1 0.0017 5.9E-08 69.0 10.0 85 103-194 1426-1515(2050)
105 2ehv_A Hypothetical protein PH 97.1 0.0025 8.6E-08 53.1 9.4 108 104-216 30-184 (251)
106 1g8p_A Magnesium-chelatase 38 97.1 0.00032 1.1E-08 61.8 3.9 50 80-129 21-70 (350)
107 1pzn_A RAD51, DNA repair and r 97.1 0.0023 7.8E-08 56.7 9.2 93 103-196 130-243 (349)
108 3kl4_A SRP54, signal recogniti 97.0 0.0045 1.5E-07 56.3 11.0 29 103-131 96-124 (433)
109 2r44_A Uncharacterized protein 97.0 0.0013 4.5E-08 57.6 7.3 45 83-129 27-71 (331)
110 3m6a_A ATP-dependent protease 97.0 0.0025 8.5E-08 59.9 9.4 48 83-130 81-134 (543)
111 1qhx_A CPT, protein (chloramph 97.0 0.0005 1.7E-08 54.4 3.8 25 105-129 4-28 (178)
112 2xxa_A Signal recognition part 97.0 0.011 3.6E-07 53.9 13.0 29 103-131 99-127 (433)
113 2hf9_A Probable hydrogenase ni 97.0 0.0011 3.7E-08 54.6 5.9 43 88-130 22-64 (226)
114 3kb2_A SPBC2 prophage-derived 96.9 0.00057 2E-08 53.6 3.8 25 105-129 2-26 (173)
115 1cr0_A DNA primase/helicase; R 96.9 0.007 2.4E-07 52.1 11.0 39 103-143 34-73 (296)
116 1vma_A Cell division protein F 96.9 0.0045 1.5E-07 53.7 9.1 102 88-193 80-195 (306)
117 1ojl_A Transcriptional regulat 96.9 0.00083 2.9E-08 58.3 4.4 46 84-129 3-50 (304)
118 3vaa_A Shikimate kinase, SK; s 96.9 0.00079 2.7E-08 54.5 4.1 27 103-129 24-50 (199)
119 1ly1_A Polynucleotide kinase; 96.8 0.00069 2.4E-08 53.5 3.6 22 105-126 3-24 (181)
120 1sky_E F1-ATPase, F1-ATP synth 96.8 0.0015 5E-08 59.8 6.1 90 105-195 152-256 (473)
121 3lw7_A Adenylate kinase relate 96.8 0.00061 2.1E-08 53.4 3.2 20 105-124 2-21 (179)
122 1j8m_F SRP54, signal recogniti 96.8 0.012 4E-07 50.9 11.5 88 104-193 98-189 (297)
123 3trf_A Shikimate kinase, SK; a 96.8 0.00086 2.9E-08 53.4 3.9 26 104-129 5-30 (185)
124 3uie_A Adenylyl-sulfate kinase 96.8 0.001 3.4E-08 53.9 4.3 29 101-129 22-50 (200)
125 4eun_A Thermoresistant glucoki 96.8 0.00094 3.2E-08 54.1 4.1 27 102-128 27-53 (200)
126 2wsm_A Hydrogenase expression/ 96.8 0.0013 4.5E-08 53.8 5.0 43 87-129 13-55 (221)
127 1zp6_A Hypothetical protein AT 96.8 0.00088 3E-08 53.6 3.8 25 103-127 8-32 (191)
128 3nbx_X ATPase RAVA; AAA+ ATPas 96.8 0.00074 2.5E-08 62.7 3.7 45 83-129 22-66 (500)
129 2rhm_A Putative kinase; P-loop 96.8 0.0011 3.7E-08 53.1 4.2 26 104-129 5-30 (193)
130 2r6a_A DNAB helicase, replicat 96.8 0.0053 1.8E-07 56.4 9.3 49 104-155 203-251 (454)
131 3t61_A Gluconokinase; PSI-biol 96.8 0.00083 2.8E-08 54.4 3.5 25 104-128 18-42 (202)
132 1kag_A SKI, shikimate kinase I 96.8 0.00078 2.7E-08 53.0 3.2 25 105-129 5-29 (173)
133 1odf_A YGR205W, hypothetical 3 96.8 0.0019 6.3E-08 55.7 5.8 29 102-130 29-57 (290)
134 1nks_A Adenylate kinase; therm 96.7 0.001 3.5E-08 53.1 3.9 26 105-130 2-27 (194)
135 3cmw_A Protein RECA, recombina 96.7 0.0038 1.3E-07 65.5 9.0 88 103-197 382-474 (1706)
136 3e70_C DPA, signal recognition 96.7 0.024 8.2E-07 49.6 12.9 29 103-131 128-156 (328)
137 2yvu_A Probable adenylyl-sulfa 96.7 0.0011 3.9E-08 52.8 4.1 29 103-131 12-40 (186)
138 1ls1_A Signal recognition part 96.7 0.0078 2.7E-07 51.9 9.6 88 103-193 97-189 (295)
139 1kgd_A CASK, peripheral plasma 96.7 0.00099 3.4E-08 53.0 3.7 26 104-129 5-30 (180)
140 3cmu_A Protein RECA, recombina 96.7 0.005 1.7E-07 65.5 9.7 87 103-196 382-473 (2050)
141 3hws_A ATP-dependent CLP prote 96.7 0.0018 6E-08 57.6 5.5 46 84-129 16-76 (363)
142 2q6t_A DNAB replication FORK h 96.7 0.013 4.4E-07 53.6 11.4 51 104-157 200-250 (444)
143 2ck3_D ATP synthase subunit be 96.7 0.014 4.7E-07 53.4 11.2 100 95-195 143-264 (482)
144 3iij_A Coilin-interacting nucl 96.7 0.0011 3.8E-08 52.6 3.6 26 104-129 11-36 (180)
145 1kht_A Adenylate kinase; phosp 96.7 0.0012 4.1E-08 52.6 3.8 26 105-130 4-29 (192)
146 3ice_A Transcription terminati 96.7 0.0026 8.7E-08 56.7 6.1 43 103-146 173-216 (422)
147 2c95_A Adenylate kinase 1; tra 96.6 0.0015 5.1E-08 52.4 4.1 27 103-129 8-34 (196)
148 3bgw_A DNAB-like replicative h 96.6 0.009 3.1E-07 54.6 9.7 40 104-145 197-236 (444)
149 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0032 1.1E-07 55.5 6.4 45 86-130 2-50 (359)
150 1via_A Shikimate kinase; struc 96.6 0.0012 4.1E-08 52.1 3.4 25 105-129 5-29 (175)
151 1tev_A UMP-CMP kinase; ploop, 96.6 0.0014 4.9E-08 52.3 3.9 26 104-129 3-28 (196)
152 2qor_A Guanylate kinase; phosp 96.6 0.0012 4.2E-08 53.6 3.5 27 103-129 11-37 (204)
153 1um8_A ATP-dependent CLP prote 96.6 0.0025 8.5E-08 56.9 5.8 46 84-129 22-97 (376)
154 1zuh_A Shikimate kinase; alpha 96.6 0.0014 4.9E-08 51.3 3.7 26 104-129 7-32 (168)
155 2ze6_A Isopentenyl transferase 96.6 0.0013 4.6E-08 55.4 3.8 25 105-129 2-26 (253)
156 3cf2_A TER ATPase, transitiona 96.6 0.013 4.4E-07 57.4 11.1 93 83-196 477-582 (806)
157 3tlx_A Adenylate kinase 2; str 96.6 0.0035 1.2E-07 52.4 6.3 42 87-128 10-53 (243)
158 1knq_A Gluconate kinase; ALFA/ 96.6 0.0015 5.1E-08 51.5 3.8 25 104-128 8-32 (175)
159 1fx0_B ATP synthase beta chain 96.6 0.0084 2.9E-07 55.0 9.0 92 104-196 165-278 (498)
160 2jaq_A Deoxyguanosine kinase; 96.6 0.0015 5.2E-08 52.6 3.8 24 106-129 2-25 (205)
161 1q57_A DNA primase/helicase; d 96.6 0.017 5.8E-07 53.7 11.4 50 104-156 242-291 (503)
162 2zts_A Putative uncharacterize 96.6 0.0051 1.7E-07 51.1 7.2 107 104-214 30-182 (251)
163 1y63_A LMAJ004144AAA protein; 96.6 0.0018 6.1E-08 51.7 4.1 25 103-127 9-33 (184)
164 2bwj_A Adenylate kinase 5; pho 96.6 0.0017 5.8E-08 52.2 4.0 26 104-129 12-37 (199)
165 3tau_A Guanylate kinase, GMP k 96.6 0.0016 5.6E-08 53.1 3.9 27 103-129 7-33 (208)
166 2iyv_A Shikimate kinase, SK; t 96.6 0.0013 4.4E-08 52.3 3.2 25 105-129 3-27 (184)
167 3tr0_A Guanylate kinase, GMP k 96.5 0.0017 5.7E-08 52.5 3.9 25 104-128 7-31 (205)
168 3asz_A Uridine kinase; cytidin 96.5 0.0019 6.6E-08 52.5 4.3 27 103-129 5-31 (211)
169 1uf9_A TT1252 protein; P-loop, 96.5 0.0018 6.1E-08 52.2 4.0 26 102-127 6-31 (203)
170 2j37_W Signal recognition part 96.5 0.04 1.4E-06 51.0 13.5 28 103-130 100-127 (504)
171 3a00_A Guanylate kinase, GMP k 96.5 0.0013 4.5E-08 52.6 3.1 25 105-129 2-26 (186)
172 1ukz_A Uridylate kinase; trans 96.5 0.0019 6.4E-08 52.2 4.1 26 103-128 14-39 (203)
173 1gvn_B Zeta; postsegregational 96.5 0.0029 9.9E-08 54.4 5.5 26 103-128 32-57 (287)
174 2j41_A Guanylate kinase; GMP, 96.5 0.0018 6.2E-08 52.3 4.0 25 104-128 6-30 (207)
175 2plr_A DTMP kinase, probable t 96.5 0.0019 6.6E-08 52.4 4.1 27 105-131 5-31 (213)
176 1cke_A CK, MSSA, protein (cyti 96.5 0.0018 6.2E-08 53.3 3.9 24 105-128 6-29 (227)
177 2bdt_A BH3686; alpha-beta prot 96.5 0.0016 5.6E-08 52.0 3.5 22 105-126 3-24 (189)
178 3thx_A DNA mismatch repair pro 96.5 0.0069 2.3E-07 60.4 8.5 23 103-125 661-683 (934)
179 1uj2_A Uridine-cytidine kinase 96.5 0.0018 6.2E-08 54.4 3.9 28 102-129 20-47 (252)
180 2ffh_A Protein (FFH); SRP54, s 96.5 0.047 1.6E-06 49.5 13.4 29 103-131 97-125 (425)
181 3cm0_A Adenylate kinase; ATP-b 96.5 0.0019 6.5E-08 51.3 3.8 25 105-129 5-29 (186)
182 1qf9_A UMP/CMP kinase, protein 96.5 0.0021 7.1E-08 51.2 4.0 26 104-129 6-31 (194)
183 1e6c_A Shikimate kinase; phosp 96.5 0.0017 5.7E-08 51.0 3.3 25 105-129 3-27 (173)
184 2bbw_A Adenylate kinase 4, AK4 96.5 0.0021 7E-08 53.9 4.0 27 103-129 26-52 (246)
185 1xjc_A MOBB protein homolog; s 96.4 0.0022 7.7E-08 50.5 3.9 29 103-131 3-31 (169)
186 1ye8_A Protein THEP1, hypothet 96.4 0.0022 7.5E-08 51.0 3.9 25 106-130 2-26 (178)
187 2cdn_A Adenylate kinase; phosp 96.4 0.0024 8.1E-08 51.6 4.2 27 103-129 19-45 (201)
188 1aky_A Adenylate kinase; ATP:A 96.4 0.0022 7.4E-08 52.7 4.0 27 103-129 3-29 (220)
189 3umf_A Adenylate kinase; rossm 96.4 0.0023 7.8E-08 52.6 4.1 28 102-129 27-54 (217)
190 3cmw_A Protein RECA, recombina 96.4 0.0081 2.8E-07 63.1 9.0 85 104-195 1431-1520(1706)
191 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0021 7E-08 54.4 3.9 26 104-129 4-29 (260)
192 2wwf_A Thymidilate kinase, put 96.4 0.0025 8.5E-08 51.8 4.2 32 104-136 10-41 (212)
193 2if2_A Dephospho-COA kinase; a 96.4 0.0019 6.7E-08 52.2 3.6 22 105-126 2-23 (204)
194 2vli_A Antibiotic resistance p 96.4 0.0014 4.7E-08 52.0 2.6 26 104-129 5-30 (183)
195 1nn5_A Similar to deoxythymidy 96.4 0.0026 9E-08 51.7 4.4 33 103-136 8-40 (215)
196 3hjn_A DTMP kinase, thymidylat 96.4 0.0065 2.2E-07 49.1 6.6 51 106-158 2-52 (197)
197 1lvg_A Guanylate kinase, GMP k 96.4 0.0019 6.6E-08 52.2 3.4 26 104-129 4-29 (198)
198 1ex7_A Guanylate kinase; subst 96.4 0.0019 6.5E-08 51.8 3.2 25 105-129 2-26 (186)
199 1zak_A Adenylate kinase; ATP:A 96.4 0.0024 8.4E-08 52.4 3.9 27 103-129 4-30 (222)
200 2pt5_A Shikimate kinase, SK; a 96.4 0.0024 8.3E-08 49.8 3.7 24 106-129 2-25 (168)
201 2z0h_A DTMP kinase, thymidylat 96.4 0.0075 2.6E-07 48.2 6.8 25 106-130 2-26 (197)
202 3tqc_A Pantothenate kinase; bi 96.4 0.0042 1.4E-07 54.2 5.5 27 103-129 91-117 (321)
203 2pbr_A DTMP kinase, thymidylat 96.3 0.0025 8.5E-08 50.9 3.8 24 106-129 2-25 (195)
204 2qt1_A Nicotinamide riboside k 96.3 0.0026 9E-08 51.6 3.8 25 103-127 20-44 (207)
205 3fwy_A Light-independent proto 96.3 0.0023 7.8E-08 55.8 3.6 41 102-144 46-86 (314)
206 1zd8_A GTP:AMP phosphotransfer 96.3 0.0025 8.4E-08 52.6 3.7 25 104-128 7-31 (227)
207 4gp7_A Metallophosphoesterase; 96.3 0.0019 6.4E-08 50.9 2.8 22 103-124 8-29 (171)
208 3ney_A 55 kDa erythrocyte memb 96.3 0.0029 9.9E-08 51.2 3.9 27 103-129 18-44 (197)
209 1jjv_A Dephospho-COA kinase; P 96.3 0.0024 8.2E-08 51.7 3.3 22 105-126 3-24 (206)
210 3fb4_A Adenylate kinase; psych 96.2 0.0029 1E-07 51.6 3.8 24 106-129 2-25 (216)
211 2p5t_B PEZT; postsegregational 96.2 0.0039 1.3E-07 52.5 4.6 27 103-129 31-57 (253)
212 1gtv_A TMK, thymidylate kinase 96.2 0.0016 5.6E-08 53.0 2.2 25 106-130 2-26 (214)
213 1znw_A Guanylate kinase, GMP k 96.2 0.0028 9.7E-08 51.5 3.5 26 104-129 20-45 (207)
214 3k1j_A LON protease, ATP-depen 96.2 0.0033 1.1E-07 59.9 4.4 49 80-130 38-86 (604)
215 1rj9_A FTSY, signal recognitio 96.2 0.0039 1.3E-07 54.1 4.4 28 103-130 101-128 (304)
216 2grj_A Dephospho-COA kinase; T 96.2 0.0033 1.1E-07 50.7 3.6 26 103-128 11-36 (192)
217 3aez_A Pantothenate kinase; tr 96.2 0.0037 1.3E-07 54.4 4.2 41 102-142 88-128 (312)
218 2jeo_A Uridine-cytidine kinase 96.2 0.0035 1.2E-07 52.4 3.9 27 102-128 23-49 (245)
219 4e22_A Cytidylate kinase; P-lo 96.2 0.0036 1.2E-07 52.7 4.0 27 103-129 26-52 (252)
220 1m7g_A Adenylylsulfate kinase; 96.2 0.005 1.7E-07 50.2 4.7 28 102-129 23-50 (211)
221 1z6g_A Guanylate kinase; struc 96.2 0.0028 9.4E-08 52.1 3.1 26 103-128 22-47 (218)
222 2v54_A DTMP kinase, thymidylat 96.1 0.0037 1.3E-07 50.4 3.8 25 104-128 4-28 (204)
223 3dl0_A Adenylate kinase; phosp 96.1 0.0033 1.1E-07 51.3 3.5 23 106-128 2-24 (216)
224 1g41_A Heat shock protein HSLU 96.1 0.0048 1.6E-07 56.2 4.7 48 83-130 15-76 (444)
225 2f1r_A Molybdopterin-guanine d 96.1 0.0032 1.1E-07 49.7 3.2 37 105-141 3-39 (171)
226 1htw_A HI0065; nucleotide-bind 96.1 0.0038 1.3E-07 48.6 3.5 27 102-128 31-57 (158)
227 1tue_A Replication protein E1; 96.1 0.009 3.1E-07 48.4 5.6 43 88-130 41-84 (212)
228 2pez_A Bifunctional 3'-phospho 96.1 0.0048 1.6E-07 48.8 4.0 27 104-130 5-31 (179)
229 3p32_A Probable GTPase RV1496/ 96.1 0.01 3.5E-07 52.6 6.5 39 92-130 65-105 (355)
230 3upu_A ATP-dependent DNA helic 96.0 0.016 5.3E-07 53.3 7.8 43 88-131 30-72 (459)
231 1s96_A Guanylate kinase, GMP k 96.0 0.004 1.4E-07 51.2 3.5 27 103-129 15-41 (219)
232 1vht_A Dephospho-COA kinase; s 96.0 0.0047 1.6E-07 50.5 3.9 23 104-126 4-26 (218)
233 3be4_A Adenylate kinase; malar 96.0 0.0045 1.5E-07 50.7 3.7 25 105-129 6-30 (217)
234 2i3b_A HCR-ntpase, human cance 96.0 0.0042 1.4E-07 49.9 3.4 25 105-129 2-26 (189)
235 2f6r_A COA synthase, bifunctio 96.0 0.0048 1.6E-07 52.8 3.9 24 103-126 74-97 (281)
236 1e4v_A Adenylate kinase; trans 96.0 0.0051 1.7E-07 50.2 3.9 23 106-128 2-24 (214)
237 3nwj_A ATSK2; P loop, shikimat 96.0 0.0042 1.4E-07 52.2 3.4 26 104-129 48-73 (250)
238 1np6_A Molybdopterin-guanine d 96.0 0.0057 2E-07 48.4 4.0 27 104-130 6-32 (174)
239 3ake_A Cytidylate kinase; CMP 96.0 0.0051 1.7E-07 49.7 3.8 25 105-129 3-27 (208)
240 1ak2_A Adenylate kinase isoenz 96.0 0.0058 2E-07 50.6 4.2 26 104-129 16-41 (233)
241 1zu4_A FTSY; GTPase, signal re 95.9 0.019 6.5E-07 50.1 7.6 38 103-142 104-141 (320)
242 3b9q_A Chloroplast SRP recepto 95.9 0.0055 1.9E-07 53.0 4.1 27 104-130 100-126 (302)
243 1sq5_A Pantothenate kinase; P- 95.9 0.012 4E-07 51.1 6.2 28 102-129 78-105 (308)
244 3sr0_A Adenylate kinase; phosp 95.9 0.0053 1.8E-07 50.0 3.8 24 106-129 2-25 (206)
245 1g5t_A COB(I)alamin adenosyltr 95.9 0.023 7.9E-07 45.6 7.4 110 104-215 28-164 (196)
246 3r20_A Cytidylate kinase; stru 95.9 0.0055 1.9E-07 50.9 3.9 26 104-129 9-34 (233)
247 2xb4_A Adenylate kinase; ATP-b 95.9 0.0053 1.8E-07 50.6 3.8 23 106-128 2-24 (223)
248 2eyu_A Twitching motility prot 95.9 0.014 4.7E-07 49.4 6.4 105 102-216 23-135 (261)
249 3end_A Light-independent proto 95.9 0.011 3.9E-07 51.0 6.0 42 101-144 38-79 (307)
250 3lv8_A DTMP kinase, thymidylat 95.9 0.02 6.7E-07 47.6 7.0 36 104-140 27-62 (236)
251 3lnc_A Guanylate kinase, GMP k 95.8 0.0033 1.1E-07 52.0 2.1 25 104-128 27-52 (231)
252 2onk_A Molybdate/tungstate ABC 95.8 0.0057 1.9E-07 51.1 3.6 26 102-128 23-48 (240)
253 1g8f_A Sulfate adenylyltransfe 95.8 0.011 3.6E-07 55.0 5.7 47 84-130 373-421 (511)
254 3d3q_A TRNA delta(2)-isopenten 95.8 0.0056 1.9E-07 53.7 3.6 25 105-129 8-32 (340)
255 4eaq_A DTMP kinase, thymidylat 95.8 0.015 5.3E-07 48.0 6.1 28 103-130 25-52 (229)
256 4tmk_A Protein (thymidylate ki 95.7 0.023 8E-07 46.4 6.9 52 105-157 4-55 (213)
257 1ltq_A Polynucleotide kinase; 95.7 0.0063 2.1E-07 52.4 3.6 23 105-127 3-25 (301)
258 2yhs_A FTSY, cell division pro 95.7 0.015 5.2E-07 53.5 6.2 28 103-130 292-319 (503)
259 2pcj_A ABC transporter, lipopr 95.7 0.0052 1.8E-07 50.7 2.9 25 104-128 30-54 (224)
260 3tif_A Uncharacterized ABC tra 95.7 0.005 1.7E-07 51.3 2.8 26 103-128 30-55 (235)
261 2og2_A Putative signal recogni 95.7 0.0078 2.7E-07 53.4 4.1 27 104-130 157-183 (359)
262 3crm_A TRNA delta(2)-isopenten 95.7 0.0067 2.3E-07 52.9 3.6 25 105-129 6-30 (323)
263 3io3_A DEHA2D07832P; chaperone 95.7 0.02 6.8E-07 50.5 6.6 31 99-129 13-43 (348)
264 3ld9_A DTMP kinase, thymidylat 95.7 0.019 6.7E-07 47.2 6.2 56 102-157 19-74 (223)
265 1a7j_A Phosphoribulokinase; tr 95.7 0.0041 1.4E-07 53.6 2.1 27 103-129 4-30 (290)
266 3exa_A TRNA delta(2)-isopenten 95.6 0.0073 2.5E-07 52.3 3.5 25 104-128 3-27 (322)
267 3vr4_D V-type sodium ATPase su 95.6 0.01 3.4E-07 54.0 4.6 91 105-195 152-259 (465)
268 3b85_A Phosphate starvation-in 95.6 0.0051 1.7E-07 50.2 2.5 23 105-127 23-45 (208)
269 1oix_A RAS-related protein RAB 95.6 0.0081 2.8E-07 48.0 3.6 25 104-128 29-53 (191)
270 3a8t_A Adenylate isopentenyltr 95.6 0.0059 2E-07 53.5 2.9 26 103-128 39-64 (339)
271 3iqw_A Tail-anchored protein t 95.6 0.022 7.5E-07 50.0 6.6 44 99-144 11-54 (334)
272 3foz_A TRNA delta(2)-isopenten 95.6 0.0083 2.8E-07 51.9 3.8 26 103-128 9-34 (316)
273 1yrb_A ATP(GTP)binding protein 95.6 0.0097 3.3E-07 49.9 4.1 27 103-129 13-39 (262)
274 4gzl_A RAS-related C3 botulinu 95.5 0.009 3.1E-07 48.2 3.7 41 88-128 14-54 (204)
275 3zvl_A Bifunctional polynucleo 95.5 0.006 2.1E-07 55.3 2.9 27 102-128 256-282 (416)
276 3cr8_A Sulfate adenylyltranfer 95.5 0.015 5E-07 54.7 5.6 46 85-130 348-395 (552)
277 2cbz_A Multidrug resistance-as 95.5 0.0066 2.2E-07 50.6 2.8 27 103-129 30-56 (237)
278 1nlf_A Regulatory protein REPA 95.5 0.0081 2.8E-07 51.2 3.4 108 104-216 30-183 (279)
279 2d2e_A SUFC protein; ABC-ATPas 95.5 0.0079 2.7E-07 50.5 3.3 24 104-127 29-52 (250)
280 3gfo_A Cobalt import ATP-bindi 95.5 0.0064 2.2E-07 51.9 2.8 26 103-128 33-58 (275)
281 1b0u_A Histidine permease; ABC 95.5 0.0065 2.2E-07 51.5 2.8 26 103-128 31-56 (262)
282 1q3t_A Cytidylate kinase; nucl 95.4 0.012 4.1E-07 48.8 4.2 27 103-129 15-41 (236)
283 4edh_A DTMP kinase, thymidylat 95.4 0.033 1.1E-06 45.5 6.8 32 104-136 6-37 (213)
284 2zu0_C Probable ATP-dependent 95.4 0.0084 2.9E-07 50.9 3.3 25 103-127 45-69 (267)
285 4g1u_C Hemin import ATP-bindin 95.4 0.007 2.4E-07 51.4 2.8 26 103-128 36-61 (266)
286 1ji0_A ABC transporter; ATP bi 95.4 0.0071 2.4E-07 50.5 2.8 26 103-128 31-56 (240)
287 1g6h_A High-affinity branched- 95.4 0.0071 2.4E-07 51.0 2.8 26 103-128 32-57 (257)
288 1sgw_A Putative ABC transporte 95.4 0.0065 2.2E-07 49.8 2.3 113 104-217 35-196 (214)
289 2pze_A Cystic fibrosis transme 95.4 0.0077 2.6E-07 49.9 2.8 27 103-129 33-59 (229)
290 2f9l_A RAB11B, member RAS onco 95.4 0.0092 3.1E-07 47.9 3.2 24 105-128 6-29 (199)
291 2olj_A Amino acid ABC transpor 95.4 0.0075 2.6E-07 51.1 2.8 26 103-128 49-74 (263)
292 2o8b_B DNA mismatch repair pro 95.4 0.059 2E-06 54.3 9.6 21 104-124 789-809 (1022)
293 2ff7_A Alpha-hemolysin translo 95.4 0.0077 2.6E-07 50.5 2.8 26 103-128 34-59 (247)
294 2dyk_A GTP-binding protein; GT 95.4 0.011 3.9E-07 45.1 3.6 24 105-128 2-25 (161)
295 2ged_A SR-beta, signal recogni 95.4 0.023 7.9E-07 45.0 5.5 26 103-128 47-72 (193)
296 2ocp_A DGK, deoxyguanosine kin 95.3 0.012 4.2E-07 48.9 4.0 26 104-129 2-27 (241)
297 1tf7_A KAIC; homohexamer, hexa 95.3 0.045 1.6E-06 51.1 8.3 107 103-214 280-417 (525)
298 1mv5_A LMRA, multidrug resista 95.3 0.008 2.7E-07 50.3 2.8 26 103-128 27-52 (243)
299 1vpl_A ABC transporter, ATP-bi 95.3 0.0082 2.8E-07 50.7 2.8 26 103-128 40-65 (256)
300 2wji_A Ferrous iron transport 95.3 0.011 3.7E-07 45.8 3.3 23 105-127 4-26 (165)
301 2v9p_A Replication protein E1; 95.3 0.012 4.2E-07 50.8 3.8 27 102-128 124-150 (305)
302 1svm_A Large T antigen; AAA+ f 95.3 0.027 9.2E-07 50.3 6.1 27 102-128 167-193 (377)
303 2ghi_A Transport protein; mult 95.3 0.0087 3E-07 50.6 2.8 26 103-128 45-70 (260)
304 2ixe_A Antigen peptide transpo 95.3 0.0087 3E-07 50.9 2.8 26 103-128 44-69 (271)
305 2ce2_X GTPase HRAS; signaling 95.3 0.012 4E-07 45.0 3.4 23 106-128 5-27 (166)
306 2qi9_C Vitamin B12 import ATP- 95.2 0.0089 3.1E-07 50.2 2.8 25 104-128 26-50 (249)
307 1zj6_A ADP-ribosylation factor 95.2 0.025 8.5E-07 44.6 5.3 35 92-127 5-39 (187)
308 3sop_A Neuronal-specific septi 95.2 0.013 4.3E-07 49.9 3.7 24 106-129 4-27 (270)
309 2yz2_A Putative ABC transporte 95.2 0.0091 3.1E-07 50.6 2.8 125 103-230 32-212 (266)
310 3eph_A TRNA isopentenyltransfe 95.2 0.014 4.8E-07 52.3 4.1 26 104-129 2-27 (409)
311 2zej_A Dardarin, leucine-rich 95.2 0.0087 3E-07 47.3 2.5 21 106-126 4-24 (184)
312 1u0j_A DNA replication protein 95.2 0.025 8.5E-07 47.8 5.4 38 90-127 88-127 (267)
313 2ihy_A ABC transporter, ATP-bi 95.2 0.0093 3.2E-07 51.0 2.8 26 103-128 46-71 (279)
314 2nq2_C Hypothetical ABC transp 95.2 0.0094 3.2E-07 50.2 2.7 124 104-230 31-203 (253)
315 2www_A Methylmalonic aciduria 95.2 0.026 9E-07 49.8 5.8 27 103-129 73-99 (349)
316 1z2a_A RAS-related protein RAB 95.1 0.013 4.3E-07 45.1 3.3 24 105-128 6-29 (168)
317 2qmh_A HPR kinase/phosphorylas 95.1 0.0095 3.2E-07 48.0 2.5 26 104-129 34-59 (205)
318 2r8r_A Sensor protein; KDPD, P 95.1 0.043 1.5E-06 45.1 6.4 38 105-144 7-44 (228)
319 2orw_A Thymidine kinase; TMTK, 95.1 0.017 5.7E-07 46.1 3.9 27 105-131 4-30 (184)
320 1nij_A Hypothetical protein YJ 95.1 0.011 3.9E-07 51.4 3.1 26 103-128 3-28 (318)
321 3f9v_A Minichromosome maintena 95.1 0.0062 2.1E-07 57.9 1.5 46 83-128 295-351 (595)
322 1jr3_D DNA polymerase III, del 95.1 0.42 1.4E-05 41.6 13.3 97 95-213 9-116 (343)
323 3jvv_A Twitching mobility prot 95.0 0.023 7.9E-07 50.3 5.0 107 102-217 121-234 (356)
324 3fkq_A NTRC-like two-domain pr 95.0 0.076 2.6E-06 47.2 8.4 58 84-143 111-181 (373)
325 1cp2_A CP2, nitrogenase iron p 95.0 0.037 1.3E-06 46.6 6.1 38 105-144 2-39 (269)
326 3con_A GTPase NRAS; structural 95.0 0.014 4.9E-07 46.1 3.3 24 105-128 22-45 (190)
327 2c61_A A-type ATP synthase non 95.0 0.029 9.8E-07 51.2 5.5 89 105-193 153-258 (469)
328 1moz_A ARL1, ADP-ribosylation 95.0 0.017 5.8E-07 45.3 3.6 33 94-126 7-40 (183)
329 3fvq_A Fe(3+) IONS import ATP- 95.0 0.014 4.8E-07 51.6 3.4 112 103-217 29-202 (359)
330 2wjg_A FEOB, ferrous iron tran 95.0 0.015 5.2E-07 45.8 3.3 23 105-127 8-30 (188)
331 2gks_A Bifunctional SAT/APS ki 95.0 0.035 1.2E-06 52.1 6.2 48 83-130 349-398 (546)
332 1m8p_A Sulfate adenylyltransfe 95.0 0.026 9E-07 53.2 5.4 28 103-130 395-422 (573)
333 1nrj_B SR-beta, signal recogni 95.0 0.019 6.4E-07 46.6 3.9 27 102-128 10-36 (218)
334 1fzq_A ADP-ribosylation factor 95.0 0.022 7.4E-07 44.9 4.2 26 102-127 14-39 (181)
335 2afh_E Nitrogenase iron protei 95.0 0.041 1.4E-06 47.0 6.2 39 104-144 2-40 (289)
336 1u8z_A RAS-related protein RAL 95.0 0.015 5.3E-07 44.5 3.3 24 105-128 5-28 (168)
337 2axn_A 6-phosphofructo-2-kinas 94.9 0.018 6.1E-07 53.7 4.2 28 103-130 34-61 (520)
338 2v3c_C SRP54, signal recogniti 94.9 0.012 4.1E-07 53.6 2.9 27 104-130 99-125 (432)
339 1r8s_A ADP-ribosylation factor 94.9 0.017 5.8E-07 44.3 3.4 23 106-128 2-24 (164)
340 2yv5_A YJEQ protein; hydrolase 94.9 0.025 8.7E-07 48.8 4.8 34 92-129 156-189 (302)
341 2pjz_A Hypothetical protein ST 94.9 0.013 4.3E-07 49.7 2.8 118 104-230 30-200 (263)
342 2vp4_A Deoxynucleoside kinase; 94.9 0.011 3.7E-07 48.9 2.3 25 103-127 19-43 (230)
343 4f4c_A Multidrug resistance pr 94.9 0.072 2.5E-06 55.4 8.9 27 103-129 443-469 (1321)
344 3kta_A Chromosome segregation 94.9 0.019 6.6E-07 45.2 3.7 25 104-128 26-50 (182)
345 2h92_A Cytidylate kinase; ross 94.9 0.016 5.5E-07 47.2 3.3 24 105-128 4-27 (219)
346 1kao_A RAP2A; GTP-binding prot 94.9 0.017 5.7E-07 44.3 3.2 23 106-128 5-27 (167)
347 1c1y_A RAS-related protein RAP 94.9 0.017 5.7E-07 44.4 3.3 23 106-128 5-27 (167)
348 2lkc_A Translation initiation 94.9 0.018 6.1E-07 44.8 3.4 26 102-127 6-31 (178)
349 2nzj_A GTP-binding protein REM 94.9 0.016 5.4E-07 45.0 3.1 24 105-128 5-28 (175)
350 1z08_A RAS-related protein RAB 94.9 0.017 5.8E-07 44.5 3.2 24 105-128 7-30 (170)
351 1m7b_A RND3/RHOE small GTP-bin 94.9 0.017 5.9E-07 45.5 3.4 24 105-128 8-31 (184)
352 1ek0_A Protein (GTP-binding pr 94.8 0.018 6E-07 44.4 3.3 23 106-128 5-27 (170)
353 3mfy_A V-type ATP synthase alp 94.8 0.024 8.2E-07 52.7 4.5 48 104-155 227-275 (588)
354 2gj8_A MNME, tRNA modification 94.8 0.017 5.9E-07 45.1 3.2 23 105-127 5-27 (172)
355 3ihw_A Centg3; RAS, centaurin, 94.8 0.018 6E-07 45.6 3.2 24 105-128 21-44 (184)
356 1z0j_A RAB-22, RAS-related pro 94.8 0.018 6.1E-07 44.4 3.2 24 105-128 7-30 (170)
357 1z47_A CYSA, putative ABC-tran 94.8 0.017 5.8E-07 51.1 3.3 114 103-217 40-209 (355)
358 2fn4_A P23, RAS-related protei 94.8 0.019 6.4E-07 44.7 3.3 25 104-128 9-33 (181)
359 2bbs_A Cystic fibrosis transme 94.8 0.015 5.2E-07 50.0 2.9 27 103-129 63-89 (290)
360 1g16_A RAS-related protein SEC 94.8 0.019 6.6E-07 44.2 3.4 24 105-128 4-27 (170)
361 3q72_A GTP-binding protein RAD 94.8 0.017 5.8E-07 44.4 3.0 21 106-126 4-24 (166)
362 3tui_C Methionine import ATP-b 94.8 0.017 5.8E-07 51.2 3.3 115 103-218 53-228 (366)
363 1svi_A GTP-binding protein YSX 94.8 0.02 6.7E-07 45.5 3.4 26 102-127 21-46 (195)
364 3kjh_A CO dehydrogenase/acetyl 94.7 0.041 1.4E-06 45.5 5.6 40 107-148 3-42 (254)
365 3q85_A GTP-binding protein REM 94.7 0.018 6E-07 44.4 3.1 21 106-126 4-24 (169)
366 1ky3_A GTP-binding protein YPT 94.7 0.019 6.4E-07 44.8 3.2 26 103-128 7-32 (182)
367 3nh6_A ATP-binding cassette SU 94.7 0.011 3.8E-07 51.2 2.0 26 103-128 79-104 (306)
368 1lw7_A Transcriptional regulat 94.7 0.018 6.3E-07 51.1 3.5 27 104-130 170-196 (365)
369 2erx_A GTP-binding protein DI- 94.7 0.016 5.4E-07 44.7 2.7 23 105-127 4-26 (172)
370 1wms_A RAB-9, RAB9, RAS-relate 94.7 0.019 6.5E-07 44.6 3.2 24 105-128 8-31 (177)
371 1p9r_A General secretion pathw 94.7 0.034 1.2E-06 50.3 5.2 29 101-129 164-192 (418)
372 2qm8_A GTPase/ATPase; G protei 94.7 0.05 1.7E-06 47.8 6.2 30 101-130 52-81 (337)
373 3fdi_A Uncharacterized protein 94.7 0.023 7.9E-07 45.9 3.7 27 104-130 6-32 (201)
374 1tq4_A IIGP1, interferon-induc 94.7 0.029 1E-06 50.6 4.7 25 103-127 68-92 (413)
375 3rlf_A Maltose/maltodextrin im 94.7 0.018 6.1E-07 51.4 3.3 27 103-129 28-54 (381)
376 1r2q_A RAS-related protein RAB 94.7 0.02 6.9E-07 44.0 3.3 24 105-128 7-30 (170)
377 2yyz_A Sugar ABC transporter, 94.7 0.018 6.3E-07 50.9 3.3 114 103-217 28-197 (359)
378 1m2o_B GTP-binding protein SAR 94.7 0.021 7E-07 45.4 3.4 24 104-127 23-46 (190)
379 2ewv_A Twitching motility prot 94.6 0.032 1.1E-06 49.7 4.9 104 102-215 134-245 (372)
380 3c5c_A RAS-like protein 12; GD 94.6 0.02 6.9E-07 45.3 3.2 25 104-128 21-45 (187)
381 3gmt_A Adenylate kinase; ssgci 94.6 0.022 7.6E-07 47.0 3.5 25 105-129 9-33 (230)
382 2it1_A 362AA long hypothetical 94.6 0.019 6.5E-07 50.9 3.3 114 103-217 28-197 (362)
383 3gqb_B V-type ATP synthase bet 94.6 0.066 2.2E-06 48.7 6.8 90 105-195 148-262 (464)
384 4dzz_A Plasmid partitioning pr 94.6 0.047 1.6E-06 43.7 5.5 44 105-150 2-46 (206)
385 1z0f_A RAB14, member RAS oncog 94.6 0.021 7.3E-07 44.3 3.3 25 104-128 15-39 (179)
386 1upt_A ARL1, ADP-ribosylation 94.6 0.022 7.4E-07 44.0 3.3 25 104-128 7-31 (171)
387 1g29_1 MALK, maltose transport 94.6 0.02 6.7E-07 51.1 3.3 27 103-129 28-54 (372)
388 2cjw_A GTP-binding protein GEM 94.6 0.023 7.7E-07 45.3 3.4 23 105-127 7-29 (192)
389 3pqc_A Probable GTP-binding pr 94.6 0.023 8E-07 44.8 3.5 25 104-128 23-47 (195)
390 2bme_A RAB4A, RAS-related prot 94.5 0.023 7.8E-07 44.6 3.4 24 105-128 11-34 (186)
391 1v43_A Sugar-binding transport 94.5 0.02 6.9E-07 50.9 3.3 26 103-128 36-61 (372)
392 2y8e_A RAB-protein 6, GH09086P 94.5 0.023 8E-07 44.1 3.4 24 105-128 15-38 (179)
393 2qe7_A ATP synthase subunit al 94.5 0.066 2.3E-06 49.2 6.7 97 95-195 152-265 (502)
394 4b3f_X DNA-binding protein smu 94.5 0.061 2.1E-06 51.6 6.9 63 89-156 192-254 (646)
395 3dz8_A RAS-related protein RAB 94.5 0.024 8.4E-07 44.9 3.5 24 105-128 24-47 (191)
396 2hxs_A RAB-26, RAS-related pro 94.5 0.019 6.6E-07 44.7 2.8 24 105-128 7-30 (178)
397 2woj_A ATPase GET3; tail-ancho 94.5 0.087 3E-06 46.5 7.3 28 102-129 16-43 (354)
398 1bif_A 6-phosphofructo-2-kinas 94.5 0.025 8.7E-07 52.0 4.0 27 103-129 38-64 (469)
399 4dsu_A GTPase KRAS, isoform 2B 94.5 0.022 7.7E-07 44.7 3.2 24 105-128 5-28 (189)
400 1p5z_B DCK, deoxycytidine kina 94.5 0.011 3.7E-07 50.0 1.4 26 103-128 23-48 (263)
401 3bc1_A RAS-related protein RAB 94.5 0.023 7.7E-07 44.8 3.3 24 105-128 12-35 (195)
402 1f6b_A SAR1; gtpases, N-termin 94.5 0.033 1.1E-06 44.6 4.2 24 103-126 24-47 (198)
403 3kkq_A RAS-related protein M-R 94.5 0.023 7.9E-07 44.5 3.3 25 104-128 18-42 (183)
404 2iwr_A Centaurin gamma 1; ANK 94.5 0.017 5.7E-07 45.1 2.4 24 105-128 8-31 (178)
405 2cxx_A Probable GTP-binding pr 94.5 0.022 7.5E-07 44.8 3.1 22 106-127 3-24 (190)
406 3d31_A Sulfate/molybdate ABC t 94.5 0.017 5.8E-07 51.0 2.6 111 103-217 25-191 (348)
407 3t5g_A GTP-binding protein RHE 94.5 0.025 8.5E-07 44.2 3.4 25 104-128 6-30 (181)
408 3t1o_A Gliding protein MGLA; G 94.5 0.024 8.1E-07 44.9 3.3 23 105-127 15-37 (198)
409 2atv_A RERG, RAS-like estrogen 94.4 0.029 9.9E-07 44.7 3.7 27 102-128 26-52 (196)
410 2oil_A CATX-8, RAS-related pro 94.4 0.024 8.1E-07 45.0 3.2 25 104-128 25-49 (193)
411 2p67_A LAO/AO transport system 94.4 0.054 1.9E-06 47.6 5.8 29 101-129 53-81 (341)
412 1mh1_A RAC1; GTP-binding, GTPa 94.4 0.025 8.4E-07 44.3 3.3 24 105-128 6-29 (186)
413 2a9k_A RAS-related protein RAL 94.4 0.025 8.5E-07 44.3 3.3 25 104-128 18-42 (187)
414 3thx_B DNA mismatch repair pro 94.4 0.051 1.7E-06 54.0 6.1 24 103-126 672-695 (918)
415 2woo_A ATPase GET3; tail-ancho 94.4 0.078 2.7E-06 46.3 6.7 31 101-131 16-46 (329)
416 3bwd_D RAC-like GTP-binding pr 94.4 0.025 8.7E-07 44.1 3.3 24 104-127 8-31 (182)
417 2efe_B Small GTP-binding prote 94.4 0.026 8.7E-07 44.1 3.2 24 105-128 13-36 (181)
418 3tqf_A HPR(Ser) kinase; transf 94.4 0.026 8.9E-07 44.4 3.1 23 105-127 17-39 (181)
419 3tmk_A Thymidylate kinase; pho 94.4 0.088 3E-06 43.0 6.5 27 104-130 5-31 (216)
420 2g6b_A RAS-related protein RAB 94.3 0.026 9E-07 43.9 3.3 24 105-128 11-34 (180)
421 3cbq_A GTP-binding protein REM 94.3 0.019 6.4E-07 46.0 2.4 22 104-125 23-44 (195)
422 3oes_A GTPase rhebl1; small GT 94.3 0.027 9.1E-07 45.1 3.4 26 103-128 23-48 (201)
423 1gwn_A RHO-related GTP-binding 94.3 0.027 9.1E-07 45.5 3.4 25 104-128 28-52 (205)
424 2ew1_A RAS-related protein RAB 94.3 0.027 9.2E-07 45.3 3.4 25 104-128 26-50 (201)
425 3gd7_A Fusion complex of cysti 94.3 0.025 8.6E-07 50.7 3.4 25 103-127 46-70 (390)
426 1u0l_A Probable GTPase ENGC; p 94.3 0.04 1.4E-06 47.5 4.6 34 92-128 160-193 (301)
427 2bov_A RAla, RAS-related prote 94.3 0.026 9E-07 45.1 3.3 25 104-128 14-38 (206)
428 2fz4_A DNA repair protein RAD2 94.3 0.18 6E-06 41.7 8.4 41 85-128 92-132 (237)
429 3tw8_B RAS-related protein RAB 94.3 0.024 8.1E-07 44.1 2.9 24 104-127 9-32 (181)
430 2fg5_A RAB-22B, RAS-related pr 94.3 0.028 9.5E-07 44.6 3.3 24 105-128 24-47 (192)
431 1vg8_A RAS-related protein RAB 94.3 0.026 9.1E-07 45.1 3.2 25 104-128 8-32 (207)
432 3cwq_A Para family chromosome 94.3 0.082 2.8E-06 42.8 6.2 43 106-151 2-45 (209)
433 3clv_A RAB5 protein, putative; 94.3 0.027 9.2E-07 44.7 3.2 25 104-128 7-31 (208)
434 1zd9_A ADP-ribosylation factor 94.3 0.028 9.5E-07 44.5 3.3 24 105-128 23-46 (188)
435 2obl_A ESCN; ATPase, hydrolase 94.2 0.031 1E-06 49.3 3.8 28 103-130 70-97 (347)
436 1pui_A ENGB, probable GTP-bind 94.2 0.017 6E-07 46.5 2.0 26 102-127 24-49 (210)
437 1oxx_K GLCV, glucose, ABC tran 94.2 0.016 5.4E-07 51.3 1.9 26 103-128 30-55 (353)
438 2fh5_B SR-beta, signal recogni 94.2 0.028 9.6E-07 45.4 3.3 26 103-128 6-31 (214)
439 2b6h_A ADP-ribosylation factor 94.2 0.024 8.1E-07 45.2 2.8 25 102-126 27-51 (192)
440 3zq6_A Putative arsenical pump 94.2 0.11 3.7E-06 45.3 7.2 38 104-143 14-51 (324)
441 2gf0_A GTP-binding protein DI- 94.2 0.03 1E-06 44.5 3.3 25 103-127 7-31 (199)
442 3reg_A RHO-like small GTPase; 94.2 0.029 1E-06 44.5 3.3 25 104-128 23-47 (194)
443 3v9p_A DTMP kinase, thymidylat 94.2 0.027 9.1E-07 46.5 3.0 28 104-131 25-52 (227)
444 2gf9_A RAS-related protein RAB 94.2 0.03 1E-06 44.2 3.3 24 105-128 23-46 (189)
445 2qnr_A Septin-2, protein NEDD5 94.1 0.024 8.1E-07 49.0 2.8 21 106-126 20-40 (301)
446 2gza_A Type IV secretion syste 94.1 0.025 8.5E-07 50.2 3.0 26 104-129 175-200 (361)
447 3tkl_A RAS-related protein RAB 94.1 0.03 1E-06 44.3 3.3 24 105-128 17-40 (196)
448 2a5j_A RAS-related protein RAB 94.1 0.03 1E-06 44.4 3.2 24 105-128 22-45 (191)
449 1z06_A RAS-related protein RAB 94.1 0.031 1E-06 44.2 3.2 25 104-128 20-44 (189)
450 4akg_A Glutathione S-transfera 94.1 0.16 5.3E-06 56.1 9.5 51 105-159 1268-1318(2695)
451 3oaa_A ATP synthase subunit al 94.1 0.21 7.3E-06 45.8 9.0 88 104-195 162-265 (513)
452 3ch4_B Pmkase, phosphomevalona 94.1 0.05 1.7E-06 43.9 4.4 27 102-128 9-35 (202)
453 3q3j_B RHO-related GTP-binding 94.1 0.036 1.2E-06 45.0 3.6 25 104-128 27-51 (214)
454 2bcg_Y Protein YP2, GTP-bindin 94.0 0.033 1.1E-06 44.6 3.4 24 105-128 9-32 (206)
455 4dkx_A RAS-related protein RAB 94.0 0.032 1.1E-06 45.6 3.3 22 106-127 15-36 (216)
456 2p5s_A RAS and EF-hand domain 94.0 0.032 1.1E-06 44.5 3.2 26 103-128 27-52 (199)
457 1x3s_A RAS-related protein RAB 94.0 0.033 1.1E-06 44.0 3.3 24 105-128 16-39 (195)
458 1ihu_A Arsenical pump-driving 94.0 0.092 3.2E-06 49.7 6.8 41 101-143 5-45 (589)
459 2g3y_A GTP-binding protein GEM 94.0 0.03 1E-06 45.6 3.1 23 104-126 37-59 (211)
460 1x6v_B Bifunctional 3'-phospho 94.0 0.037 1.3E-06 52.6 4.0 27 103-129 51-77 (630)
461 1zbd_A Rabphilin-3A; G protein 94.0 0.028 9.4E-07 45.0 2.7 24 105-128 9-32 (203)
462 1ksh_A ARF-like protein 2; sma 94.0 0.037 1.3E-06 43.5 3.4 27 102-128 16-42 (186)
463 3llu_A RAS-related GTP-binding 94.0 0.027 9.4E-07 44.9 2.7 24 104-127 20-43 (196)
464 2npi_A Protein CLP1; CLP1-PCF1 93.9 0.03 1E-06 51.3 3.2 27 103-129 137-163 (460)
465 2fv8_A H6, RHO-related GTP-bin 93.9 0.036 1.2E-06 44.6 3.3 24 105-128 26-49 (207)
466 4hlc_A DTMP kinase, thymidylat 93.9 0.088 3E-06 42.6 5.6 25 105-129 3-27 (205)
467 2r9v_A ATP synthase subunit al 93.9 0.068 2.3E-06 49.2 5.4 88 104-195 175-278 (515)
468 2atx_A Small GTP binding prote 93.9 0.037 1.3E-06 43.8 3.3 24 105-128 19-42 (194)
469 3def_A T7I23.11 protein; chlor 93.9 0.07 2.4E-06 44.9 5.1 37 92-128 22-60 (262)
470 3lxx_A GTPase IMAP family memb 93.8 0.033 1.1E-06 46.1 3.1 26 103-128 28-53 (239)
471 2j0v_A RAC-like GTP-binding pr 93.8 0.038 1.3E-06 44.5 3.4 24 105-128 10-33 (212)
472 2o52_A RAS-related protein RAB 93.8 0.036 1.2E-06 44.3 3.2 24 104-127 25-48 (200)
473 2hup_A RAS-related protein RAB 93.8 0.038 1.3E-06 44.3 3.3 25 104-128 29-53 (201)
474 2rcn_A Probable GTPase ENGC; Y 93.8 0.035 1.2E-06 49.1 3.3 24 105-128 216-239 (358)
475 2qu8_A Putative nucleolar GTP- 93.8 0.042 1.4E-06 45.0 3.6 25 103-127 28-52 (228)
476 2q3h_A RAS homolog gene family 93.8 0.036 1.2E-06 44.2 3.1 25 104-128 20-44 (201)
477 2gco_A H9, RHO-related GTP-bin 93.8 0.04 1.4E-06 44.1 3.4 24 105-128 26-49 (201)
478 3ug7_A Arsenical pump-driving 93.8 0.1 3.5E-06 45.9 6.3 38 103-142 25-62 (349)
479 3vr4_A V-type sodium ATPase ca 93.8 0.18 6.2E-06 47.0 8.0 57 95-155 222-280 (600)
480 2h17_A ADP-ribosylation factor 93.8 0.029 1E-06 44.0 2.4 23 105-127 22-44 (181)
481 2ck3_A ATP synthase subunit al 93.7 0.12 4.1E-06 47.6 6.7 92 104-195 162-273 (510)
482 3hdt_A Putative kinase; struct 93.7 0.054 1.9E-06 44.5 4.1 26 104-129 14-39 (223)
483 3cio_A ETK, tyrosine-protein k 93.7 0.24 8.3E-06 42.5 8.5 53 90-144 86-143 (299)
484 3cph_A RAS-related protein SEC 93.7 0.039 1.3E-06 44.3 3.3 25 104-128 20-44 (213)
485 2j1l_A RHO-related GTP-binding 93.7 0.038 1.3E-06 44.8 3.2 24 104-127 34-57 (214)
486 4bas_A ADP-ribosylation factor 93.7 0.039 1.3E-06 43.8 3.1 26 103-128 16-41 (199)
487 1ypw_A Transitional endoplasmi 93.7 0.023 8E-07 55.9 2.1 48 83-130 477-537 (806)
488 1c9k_A COBU, adenosylcobinamid 93.7 0.038 1.3E-06 43.8 3.0 22 106-127 1-22 (180)
489 3k53_A Ferrous iron transport 93.7 0.045 1.5E-06 46.3 3.6 25 104-128 3-27 (271)
490 2oze_A ORF delta'; para, walke 93.7 0.16 5.5E-06 43.3 7.2 52 91-145 22-76 (298)
491 2fu5_C RAS-related protein RAB 93.6 0.022 7.5E-07 44.6 1.5 23 105-127 9-31 (183)
492 1ega_A Protein (GTP-binding pr 93.6 0.04 1.4E-06 47.5 3.3 25 104-128 8-32 (301)
493 2pt7_A CAG-ALFA; ATPase, prote 93.6 0.027 9.3E-07 49.3 2.2 100 105-215 172-276 (330)
494 2dpy_A FLII, flagellum-specifi 93.6 0.044 1.5E-06 49.9 3.6 29 102-130 155-183 (438)
495 2aka_B Dynamin-1; fusion prote 93.6 0.092 3.2E-06 44.8 5.5 26 103-128 25-50 (299)
496 2il1_A RAB12; G-protein, GDP, 93.6 0.039 1.3E-06 43.8 2.9 24 105-128 27-50 (192)
497 2qag_B Septin-6, protein NEDD5 93.5 0.036 1.2E-06 50.2 2.9 21 107-127 45-65 (427)
498 1mky_A Probable GTP-binding pr 93.5 0.097 3.3E-06 47.6 5.8 43 86-128 151-204 (439)
499 1h65_A Chloroplast outer envel 93.5 0.1 3.4E-06 44.1 5.5 39 90-128 23-63 (270)
500 3ea0_A ATPase, para family; al 93.4 0.073 2.5E-06 43.9 4.4 40 103-143 3-43 (245)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.7e-35 Score=278.87 Aligned_cols=214 Identities=12% Similarity=0.079 Sum_probs=161.1
Q ss_pred cchHHHHHHHHHHhhcC---CCcEEEEEeCCCCcHHHHHHHHHH--HhhcccCCCeEEEEEecCCC--CHHHHHHHHHHH
Q 043850 86 DSRKEIFQVVMESLKDD---KLKVIGVYGMGGVGKTTLVKQVAM--KVMEDKLFDKVVMAEVTQTP--DYRKIEDQFAFD 158 (309)
Q Consensus 86 ~gR~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~ 158 (309)
+||++++++|.++|... +.++|+|+||||+||||||+++|+ +.+...+|++++|+++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999543 579999999999999999999998 56677789999999999885 789999999999
Q ss_pred hCCCCC--C-----CCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--CCCCCCcEEEEeeCCccccccccCCCceEec
Q 043850 159 LGMKLD--L-----NDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE--KDDQERCTIVLISRSRDLLCNDMNSQKDFWI 229 (309)
Q Consensus 159 l~~~~~--~-----~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~--~~~~~gs~iliTtR~~~v~~~~~~~~~~~~l 229 (309)
++.... . ..+.......+++.|.+++|+||||||||+..+ ....+||+||||||+..++.........|.+
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l 290 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEV 290 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEEEC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEEEC
Confidence 986532 1 124456788999999885489999999999775 2233899999999999987532224456777
Q ss_pred C----------------CCCCCCCCcHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHhcCCCccccCCCchhH
Q 043850 230 D----------------DSTRISAYQPTEHEIVERRGGLPVAPSTIANALKSKSVAIWKDALNQLKSPSLKEIHGMDADV 293 (309)
Q Consensus 230 ~----------------~~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~i 293 (309)
+ +....+.+.+.+++|+++|+|+||||+++|+.|+.+. |..+ +.+..... .. ...++
T Consensus 291 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~-~~--~~~~i 363 (549)
T 2a5y_B 291 TSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLE-SR--GLVGV 363 (549)
T ss_dssp CCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHH-HH--CSSTT
T ss_pred CCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhh-cc--cHHHH
Confidence 7 1111255667899999999999999999999998764 4332 23222110 10 13346
Q ss_pred HHHHHHhhcCCCC
Q 043850 294 YSSIKFMLQSESQ 306 (309)
Q Consensus 294 ~~~l~~sy~~L~~ 306 (309)
..+|.+||++||+
T Consensus 364 ~~~l~~Sy~~L~~ 376 (549)
T 2a5y_B 364 ECITPYSYKSLAM 376 (549)
T ss_dssp CCCSSSSSSSHHH
T ss_pred HHHHhcccccccH
Confidence 6777778877764
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=6.1e-31 Score=271.11 Aligned_cols=230 Identities=19% Similarity=0.279 Sum_probs=178.9
Q ss_pred cCCCcccccchHHHHHHHHHHhh--cCCCcEEEEEeCCCCcHHHHHHHHHHHhhc-cc-CCCeEEEEEecCCCC--HHHH
Q 043850 78 DVKDYEIFDSRKEIFQVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKVME-DK-LFDKVVMAEVTQTPD--YRKI 151 (309)
Q Consensus 78 ~~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~-~f~~~~wv~~~~~~~--~~~~ 151 (309)
.|.++..|+||++++++|.+.|. +++.++|+|+||||+||||||+++|++.+. .. +|+.++|+++++..+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 45567789999999999999994 456899999999999999999999988643 23 456899999998643 4455
Q ss_pred HHHHHHHhCCCCC----CCCCHHHHHHHHHHHHhcC-CeEEEEEeCCCCccC-CCCCCCcEEEEeeCCccccccccCCCc
Q 043850 152 EDQFAFDLGMKLD----LNDSTLERTDGLRKRLNKE-MRVLIILDNIWTKLE-KDDQERCTIVLISRSRDLLCNDMNSQK 225 (309)
Q Consensus 152 ~~~i~~~l~~~~~----~~~~~~~~~~~l~~~L~~~-~r~LlVlDdv~~~~~-~~~~~gs~iliTtR~~~v~~~~~~~~~ 225 (309)
+..++..++.... ...+.+.....++..|.++ +|+||||||+|+... ....+||+||||||++.++...+....
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~ 278 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKH 278 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBC
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCce
Confidence 7777777765432 2356677888888888652 389999999998877 566889999999999988754455556
Q ss_pred eEecC---------------CCCCCCCCcHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHhcCCCcccc----
Q 043850 226 DFWID---------------DSTRISAYQPTEHEIVERRGGLPVAPSTIANALKSKSVAIWKDALNQLKSPSLKEI---- 286 (309)
Q Consensus 226 ~~~l~---------------~~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l~~~~~~~w~~~l~~l~~~~~~~~---- 286 (309)
.+.+. .....+...+.+++|+++|+|+||||+++|++|+.+. ..|...++.+.......+
T Consensus 279 ~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~ 357 (1249)
T 3sfz_A 279 VVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSS 357 (1249)
T ss_dssp CEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTT
T ss_pred EEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhccccc
Confidence 66654 1334456678899999999999999999999999765 579999998876543322
Q ss_pred CCCchhHHHHHHHhhcCCCCCC
Q 043850 287 HGMDADVYSSIKFMLQSESQKQ 308 (309)
Q Consensus 287 ~~~~~~i~~~l~~sy~~L~~~~ 308 (309)
......+..+|.+||+.||+++
T Consensus 358 ~~~~~~~~~~l~~s~~~L~~~~ 379 (1249)
T 3sfz_A 358 SYDYEALDEAMSISVEMLREDI 379 (1249)
T ss_dssp CTTHHHHHHHHHHHHHTSCTTT
T ss_pred ccchHHHHHHHHHHHHhCCHHH
Confidence 1223579999999999999874
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=235.98 Aligned_cols=227 Identities=20% Similarity=0.291 Sum_probs=167.5
Q ss_pred cCCCcccccchHHHHHHHHHHhh--cCCCcEEEEEeCCCCcHHHHHHHHHHHhhc-ccCC-CeEEEEEecCCCCHHHHHH
Q 043850 78 DVKDYEIFDSRKEIFQVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKVME-DKLF-DKVVMAEVTQTPDYRKIED 153 (309)
Q Consensus 78 ~~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~ 153 (309)
.|..+..|+||++++++|.++|. .++.++|+|+|+||+||||||.+++++... ..+| +.++|++++.. +...++.
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 35567789999999999999996 346789999999999999999999987654 4568 48999999876 3333333
Q ss_pred H---HHHHhCCC----CCCCCCHHHHHHHHHHHHhcC-CeEEEEEeCCCCccC-CCCCCCcEEEEeeCCccccccccCCC
Q 043850 154 Q---FAFDLGMK----LDLNDSTLERTDGLRKRLNKE-MRVLIILDNIWTKLE-KDDQERCTIVLISRSRDLLCNDMNSQ 224 (309)
Q Consensus 154 ~---i~~~l~~~----~~~~~~~~~~~~~l~~~L~~~-~r~LlVlDdv~~~~~-~~~~~gs~iliTtR~~~v~~~~~~~~ 224 (309)
. ++..++.. .....+.......+...+.+. +++||||||+|+... ....++++||+|||+..++.... .
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~--~ 275 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVM--G 275 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCC--S
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcC--C
Confidence 3 34455531 112356677788888888763 479999999998766 44577999999999998754322 2
Q ss_pred ceEec------C-----------CCCCCCCCcHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHHhcCCCcccc-
Q 043850 225 KDFWI------D-----------DSTRISAYQPTEHEIVERRGGLPVAPSTIANALKSKSVAIWKDALNQLKSPSLKEI- 286 (309)
Q Consensus 225 ~~~~l------~-----------~~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l~~~~~~~w~~~l~~l~~~~~~~~- 286 (309)
..+.+ . .........+.+.+|+++|+|+||||.++|+.|+.+. ..|..+++.+.......+
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~ 354 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIR 354 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSS
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhh
Confidence 22332 2 1122233467889999999999999999999998653 579999998876543222
Q ss_pred ---CCCchhHHHHHHHhhcCCCCCC
Q 043850 287 ---HGMDADVYSSIKFMLQSESQKQ 308 (309)
Q Consensus 287 ---~~~~~~i~~~l~~sy~~L~~~~ 308 (309)
......+..++..||+.||+++
T Consensus 355 ~~~~~~~~~l~~~l~~s~~~L~~~~ 379 (591)
T 1z6t_A 355 KSSSYDYEALDEAMSISVEMLREDI 379 (591)
T ss_dssp CCCSSCCHHHHHHHHHHHHTSCTTT
T ss_pred hccccchHHHHHHHHHHHHhCCHHH
Confidence 1224679999999999999864
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.95 E-value=8.5e-29 Score=242.21 Aligned_cols=206 Identities=16% Similarity=0.110 Sum_probs=148.8
Q ss_pred ccchHHHHHHHHHHhhc-CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCe-EEEEEecCCCCHHHHHHHHHHHhCC-
Q 043850 85 FDSRKEIFQVVMESLKD-DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDK-VVMAEVTQTPDYRKIEDQFAFDLGM- 161 (309)
Q Consensus 85 ~~gR~~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~- 161 (309)
.+||++++++|.++|.+ ++.++|+|+||||+||||||+++|++.+...+|+. ++|+++++.++...++..|+..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 49999999999999965 56799999999999999999999998766667985 9999999999988888888775422
Q ss_pred --CCCC--------CCCHHHHHHHHHHHHh--cCCeEEEEEeCCCCccC-CCCCCCcEEEEeeCCccccccccCCCceEe
Q 043850 162 --KLDL--------NDSTLERTDGLRKRLN--KEMRVLIILDNIWTKLE-KDDQERCTIVLISRSRDLLCNDMNSQKDFW 228 (309)
Q Consensus 162 --~~~~--------~~~~~~~~~~l~~~L~--~~~r~LlVlDdv~~~~~-~~~~~gs~iliTtR~~~v~~~~~~~~~~~~ 228 (309)
.... +.+.+.....+++.|. ..+|+||||||+|+... ....+||+||||||++.++.. +.....|.
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~-l~g~~vy~ 288 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-LSAATTTH 288 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHH-HHHHSSCE
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHh-cCCCeEEE
Confidence 1110 0123345566777662 23589999999999766 222489999999999987631 11111222
Q ss_pred cC--C---------------CCCCCCCcHHHHHHHHHhCCCchHHHHHHHHhcCC--ChHHHHHHHHHhcCCCccccCCC
Q 043850 229 ID--D---------------STRISAYQPTEHEIVERRGGLPVAPSTIANALKSK--SVAIWKDALNQLKSPSLKEIHGM 289 (309)
Q Consensus 229 l~--~---------------~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l~~~--~~~~w~~~l~~l~~~~~~~~~~~ 289 (309)
++ . ........++..+ .|+|+||||.++|+.|+.+ +.++|... .
T Consensus 289 LeL~d~dL~LS~eEA~eLF~~~~g~~~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~--------------~ 351 (1221)
T 1vt4_I 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV--------------N 351 (1221)
T ss_dssp EEECSSSSCCCHHHHHHHHHHHHCCCTTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC--------------S
T ss_pred ecCccccCCcCHHHHHHHHHHHcCCCHHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC--------------C
Confidence 22 0 0000112233333 4999999999999999977 47788652 1
Q ss_pred chhHHHHHHHhhcCCCCCC
Q 043850 290 DADVYSSIKFMLQSESQKQ 308 (309)
Q Consensus 290 ~~~i~~~l~~sy~~L~~~~ 308 (309)
...+..+|.+||+.||+++
T Consensus 352 ~~~I~aaLelSYd~Lp~ee 370 (1221)
T 1vt4_I 352 CDKLTTIIESSLNVLEPAE 370 (1221)
T ss_dssp CHHHHHHHHHHHHHSCTTH
T ss_pred hhHHHHHHHHHHHhCCHHH
Confidence 4678999999999999864
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.57 E-value=3e-14 Score=127.04 Aligned_cols=178 Identities=16% Similarity=0.134 Sum_probs=117.1
Q ss_pred ccCCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC------CHHH
Q 043850 77 RDVKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP------DYRK 150 (309)
Q Consensus 77 ~~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~~~~ 150 (309)
.++..+..|+||+++++.|.+++... +++.|+|++|+|||+|++++++.. . .+|+++.... +...
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~ 76 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREE 76 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHH
Confidence 34456678999999999999998654 799999999999999999998764 1 6788775432 5666
Q ss_pred HHHHHHHHhCC-----------------CCC-CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--------C------
Q 043850 151 IEDQFAFDLGM-----------------KLD-LNDSTLERTDGLRKRLNKEMRVLIILDNIWTKL--------E------ 198 (309)
Q Consensus 151 ~~~~i~~~l~~-----------------~~~-~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~--------~------ 198 (309)
++..+...+.. ... ...+..+....+.+....+++++|||||++... .
T Consensus 77 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~ 156 (350)
T 2qen_A 77 LIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFA 156 (350)
T ss_dssp HHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHH
Confidence 77777665542 000 013445555566555543227999999997632 1
Q ss_pred --CCCCCCcEEEEeeCCcccccc---------ccC--CCceEecC---------------CCCCCCCCcHHHHHHHHHhC
Q 043850 199 --KDDQERCTIVLISRSRDLLCN---------DMN--SQKDFWID---------------DSTRISAYQPTEHEIVERRG 250 (309)
Q Consensus 199 --~~~~~gs~iliTtR~~~v~~~---------~~~--~~~~~~l~---------------~~~~~~~~~~~~~~i~~~c~ 250 (309)
.....+..+|+|++....... ... ....+.+. .........+.+..|++.|+
T Consensus 157 ~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tg 236 (350)
T 2qen_A 157 YAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLD 236 (350)
T ss_dssp HHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHT
T ss_pred HHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 112257889999887542111 011 11234444 11111233567889999999
Q ss_pred CCchHHHHHHHHh
Q 043850 251 GLPVAPSTIANAL 263 (309)
Q Consensus 251 GlPLai~~~a~~l 263 (309)
|+|+++..++..+
T Consensus 237 G~P~~l~~~~~~~ 249 (350)
T 2qen_A 237 GIPGWLVVFGVEY 249 (350)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998764
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=1.1e-12 Score=117.11 Aligned_cols=175 Identities=13% Similarity=0.168 Sum_probs=106.7
Q ss_pred cCCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC-----CCHHHHH
Q 043850 78 DVKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT-----PDYRKIE 152 (309)
Q Consensus 78 ~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~ 152 (309)
++..+..|+||+++++.|.+ +.. +++.|+|++|+|||+|++.+++.... ..+|+++... .+...++
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHH
Confidence 34456789999999999999 765 69999999999999999999987642 2578887643 3445555
Q ss_pred HHHHHHhC--------------C----CCC-----------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc-----C
Q 043850 153 DQFAFDLG--------------M----KLD-----------LNDSTLERTDGLRKRLNKEMRVLIILDNIWTKL-----E 198 (309)
Q Consensus 153 ~~i~~~l~--------------~----~~~-----------~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~-----~ 198 (309)
..+...+. . +.. ...........+.+. ..+ +++|||||++... .
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~-~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQA-SKD-NVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHT-CSS-CEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhc-CCC-CeEEEEECHHHhhccCchh
Confidence 55444331 0 000 012223333333222 113 7999999996632 1
Q ss_pred --------CCCCCCcEEEEeeCCccccccc---------cC-C-CceEecC------------CC--CCCCCCcHHHHHH
Q 043850 199 --------KDDQERCTIVLISRSRDLLCND---------MN-S-QKDFWID------------DS--TRISAYQPTEHEI 245 (309)
Q Consensus 199 --------~~~~~gs~iliTtR~~~v~~~~---------~~-~-~~~~~l~------------~~--~~~~~~~~~~~~i 245 (309)
.....+..+|+|++........ .. . ...+.+. .. .......+. ..|
T Consensus 157 ~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-~~i 235 (357)
T 2fna_A 157 LLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY-EVV 235 (357)
T ss_dssp CHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH-HHH
T ss_pred HHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH-HHH
Confidence 1112467899999976421110 11 1 1344444 00 000111122 789
Q ss_pred HHHhCCCchHHHHHHHHhc
Q 043850 246 VERRGGLPVAPSTIANALK 264 (309)
Q Consensus 246 ~~~c~GlPLai~~~a~~l~ 264 (309)
++.|+|+|+++..++..+.
T Consensus 236 ~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHc
Confidence 9999999999999987764
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.45 E-value=2.6e-12 Score=117.20 Aligned_cols=180 Identities=17% Similarity=0.136 Sum_probs=120.1
Q ss_pred cccccchHHHHHHHHHHh-h----c--CCCcEEEE--EeCCCCcHHHHHHHHHHHhhcc---cCCC-eEEEEEecCCCCH
Q 043850 82 YEIFDSRKEIFQVVMESL-K----D--DKLKVIGV--YGMGGVGKTTLVKQVAMKVMED---KLFD-KVVMAEVTQTPDY 148 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L-~----~--~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~~~~~~~ 148 (309)
+..|+||++++++|.+.+ . . .....+.| +|++|+|||+||+.+++..... ..|. .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 467999999999999888 4 2 24567777 9999999999999999886542 1233 4678888777889
Q ss_pred HHHHHHHHHHhCCCCCC-CCCHHHHHHHHHHHHh-cCCeEEEEEeCCCCcc-------C----------CCC--C--CCc
Q 043850 149 RKIEDQFAFDLGMKLDL-NDSTLERTDGLRKRLN-KEMRVLIILDNIWTKL-------E----------KDD--Q--ERC 205 (309)
Q Consensus 149 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~L~-~~~r~LlVlDdv~~~~-------~----------~~~--~--~gs 205 (309)
..++..++..++..... ..+..+....+.+.+. .+++++|||||++... . ... . ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 99999999999875432 2345666777777774 2348999999997632 1 111 2 445
Q ss_pred EEEEeeCCccccccc--------cCCCceEecC-----------------CCCCCCCCcHHHHHHHHHhC------CCch
Q 043850 206 TIVLISRSRDLLCND--------MNSQKDFWID-----------------DSTRISAYQPTEHEIVERRG------GLPV 254 (309)
Q Consensus 206 ~iliTtR~~~v~~~~--------~~~~~~~~l~-----------------~~~~~~~~~~~~~~i~~~c~------GlPL 254 (309)
.+|+||+...+.... ......+.+. .........+....|++.|+ |.|.
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 588888765432100 0011114444 01112233567889999999 9997
Q ss_pred HHHHHHH
Q 043850 255 APSTIAN 261 (309)
Q Consensus 255 ai~~~a~ 261 (309)
.+..+..
T Consensus 261 ~~~~l~~ 267 (412)
T 1w5s_A 261 RAIVALK 267 (412)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
No 8
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=2e-11 Score=109.97 Aligned_cols=176 Identities=18% Similarity=0.150 Sum_probs=116.9
Q ss_pred cccccchHHHHHHHHHHhh----cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccC-CCeEEEEEecCCCCHHHHHHHHH
Q 043850 82 YEIFDSRKEIFQVVMESLK----DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKL-FDKVVMAEVTQTPDYRKIEDQFA 156 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 156 (309)
+..|+||+++++.|.+++. ......+.|+|++|+||||||+.+++....... -...+|+++....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999886 345678999999999999999999988765411 12567888777777888888888
Q ss_pred HHhCCCCCC-CCCHHHHHHHHHHHHhcC-CeEEEEEeCCCCcc-----C--------C--CCCCCcEEEEeeCCcccccc
Q 043850 157 FDLGMKLDL-NDSTLERTDGLRKRLNKE-MRVLIILDNIWTKL-----E--------K--DDQERCTIVLISRSRDLLCN 219 (309)
Q Consensus 157 ~~l~~~~~~-~~~~~~~~~~l~~~L~~~-~r~LlVlDdv~~~~-----~--------~--~~~~gs~iliTtR~~~v~~~ 219 (309)
..++..... ..+..+....+.+.+... ++.+||||+++... . . ....+..+|+||+.......
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 887664332 234566667777777543 37999999996643 2 1 13446677888887643211
Q ss_pred cc-----C-CCceEecC-----------------CCCCCCCCcHHHHHHHHHhC---CCchHHH
Q 043850 220 DM-----N-SQKDFWID-----------------DSTRISAYQPTEHEIVERRG---GLPVAPS 257 (309)
Q Consensus 220 ~~-----~-~~~~~~l~-----------------~~~~~~~~~~~~~~i~~~c~---GlPLai~ 257 (309)
.. . ....+.+. ......-..+..+.+++.++ |.|..+.
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 10 0 11244444 11122334556777888888 9988443
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=9.8e-11 Score=105.70 Aligned_cols=195 Identities=14% Similarity=0.089 Sum_probs=125.6
Q ss_pred ccccchHHHHHHHHHHhh----cCCCcEEEEEeCCCCcHHHHHHHHHHHhhccc----C--CCeEEEEEecCCC-CHHHH
Q 043850 83 EIFDSRKEIFQVVMESLK----DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDK----L--FDKVVMAEVTQTP-DYRKI 151 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~--f~~~~wv~~~~~~-~~~~~ 151 (309)
..|+||++++++|.+++. ....+.+.|+|++|+|||+||+.+++...... . ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 679999999999988774 34467899999999999999999998864321 1 2357888887777 88889
Q ss_pred HHHHHHHh-CCCCCC-CCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc--------C---CCCCCCcEEEEeeCCccccc
Q 043850 152 EDQFAFDL-GMKLDL-NDSTLERTDGLRKRLNKEMRVLIILDNIWTKL--------E---KDDQERCTIVLISRSRDLLC 218 (309)
Q Consensus 152 ~~~i~~~l-~~~~~~-~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~--------~---~~~~~gs~iliTtR~~~v~~ 218 (309)
+..++..+ +..... ..+.......+.+.+... +.+|||||++... . .....+..+|+||+......
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 99998887 433222 233456677788888775 3599999996532 1 11116788899988763211
Q ss_pred ---ccc--CCCceEecC-----------------CCCCCCCCcHHHHHHHHHhC---CCch-HHHHHHHHh--c-C---C
Q 043850 219 ---NDM--NSQKDFWID-----------------DSTRISAYQPTEHEIVERRG---GLPV-APSTIANAL--K-S---K 266 (309)
Q Consensus 219 ---~~~--~~~~~~~l~-----------------~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~a~~l--~-~---~ 266 (309)
... .....+.+. +.....-..+..+.+++.|+ |.|. |+..+-... . + -
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i 258 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGII 258 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 000 111244444 11122334567788888888 8776 433333222 2 1 1
Q ss_pred ChHHHHHHHHHh
Q 043850 267 SVAIWKDALNQL 278 (309)
Q Consensus 267 ~~~~w~~~l~~l 278 (309)
+.+.+..+++..
T Consensus 259 ~~~~v~~~~~~~ 270 (384)
T 2qby_B 259 RKEHVDKAIVDY 270 (384)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 266666666553
No 10
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.31 E-value=5e-11 Score=98.78 Aligned_cols=121 Identities=12% Similarity=0.123 Sum_probs=78.5
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFD 158 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 158 (309)
|.....++||++.++.|.+++.....+.+.|+|++|+|||+||+.+++.......-...+.++.+.......+...+...
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEF 92 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHH
Confidence 34556799999999999999977666669999999999999999999876443111234445544444433332222221
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------CCCCCCcEEEEeeCCcc
Q 043850 159 LGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE----------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 159 l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~----------~~~~~gs~iliTtR~~~ 215 (309)
..... ....++.+||+||++.... .....++.+|+||+...
T Consensus 93 ~~~~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 93 ARTAP----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp HTSCC----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred hcccC----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 11100 0112479999999977643 23345678888887664
No 11
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.29 E-value=4.9e-11 Score=100.13 Aligned_cols=177 Identities=10% Similarity=0.114 Sum_probs=97.3
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHH
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAF 157 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 157 (309)
|.....|+||+.+++.|..++.... .+.+.|+|++|+||||||+.+++.......+... ....... ...+..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~ 91 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT------PCGVCDN-CREIEQ 91 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS------CCSCSHH-HHHHHT
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC------CCcccHH-HHHHhc
Confidence 4455679999999999999986543 4689999999999999999999877543111000 0000000 000000
Q ss_pred HhC-----CCCCCCCCHHHHHHHHHHHHh----cCCeEEEEEeCCCCccC----------CCCCCCcEEEEeeCCccccc
Q 043850 158 DLG-----MKLDLNDSTLERTDGLRKRLN----KEMRVLIILDNIWTKLE----------KDDQERCTIVLISRSRDLLC 218 (309)
Q Consensus 158 ~l~-----~~~~~~~~~~~~~~~l~~~L~----~~~r~LlVlDdv~~~~~----------~~~~~gs~iliTtR~~~v~~ 218 (309)
... ..... .........+.+.+. ..++.+||+||++.... .....++.+|+||+......
T Consensus 92 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 92 GRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TCCSSEEEEETTC-GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred cCCcceEEecCcc-cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 000 00000 001111112222211 12369999999977543 23345778888887654221
Q ss_pred c-ccCCCceEecC---------------CCCCCCCCcHHHHHHHHHhCCCchHHHHHHHHh
Q 043850 219 N-DMNSQKDFWID---------------DSTRISAYQPTEHEIVERRGGLPVAPSTIANAL 263 (309)
Q Consensus 219 ~-~~~~~~~~~l~---------------~~~~~~~~~~~~~~i~~~c~GlPLai~~~a~~l 263 (309)
. .......+.+. .........+..+.|++.|+|+|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 11112344444 111122234567789999999998888776544
No 12
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.26 E-value=1.5e-10 Score=104.34 Aligned_cols=134 Identities=20% Similarity=0.250 Sum_probs=97.7
Q ss_pred cccccchHHHHHHHHHHhhc----CCCcEEEEEeCCCCcHHHHHHHHHHHhhccc---C-CCeEEEEEecCCCCHHHHHH
Q 043850 82 YEIFDSRKEIFQVVMESLKD----DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDK---L-FDKVVMAEVTQTPDYRKIED 153 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~-f~~~~wv~~~~~~~~~~~~~ 153 (309)
+..|+||++++++|..++.. ...+.+.|+|++|+|||+||+.+++...... . -...+|+++....+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 47899999999999998842 4567899999999999999999998774320 1 12567888888889999999
Q ss_pred HHHHHhCCCCCC-CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc----C----------CCC---CCCcEEEEeeCCc
Q 043850 154 QFAFDLGMKLDL-NDSTLERTDGLRKRLNK-EMRVLIILDNIWTKL----E----------KDD---QERCTIVLISRSR 214 (309)
Q Consensus 154 ~i~~~l~~~~~~-~~~~~~~~~~l~~~L~~-~~r~LlVlDdv~~~~----~----------~~~---~~gs~iliTtR~~ 214 (309)
.++..++..... ..+..+....+.+.+.. +++.+||||+++... . ... ..+..+|+||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 999999765433 23456667777777743 347999999996632 1 111 4566788888766
Q ss_pred c
Q 043850 215 D 215 (309)
Q Consensus 215 ~ 215 (309)
.
T Consensus 178 ~ 178 (387)
T 2v1u_A 178 G 178 (387)
T ss_dssp T
T ss_pred c
Confidence 3
No 13
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.26 E-value=3e-10 Score=102.60 Aligned_cols=133 Identities=16% Similarity=0.183 Sum_probs=98.7
Q ss_pred cccccchHHHHHHHHHHhhc----CCCc--EEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHH
Q 043850 82 YEIFDSRKEIFQVVMESLKD----DKLK--VIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQF 155 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~~----~~~~--vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 155 (309)
+..++||++++++|..++.. .... .+.|+|++|+|||||++.+++...... -..++|++++...+...++..+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHH
Confidence 36799999999999998854 3334 899999999999999999998876431 1356788888888889999999
Q ss_pred HHHhCCCCCC-CCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCccC---------CC--CC---CCcEEEEeeCCcc
Q 043850 156 AFDLGMKLDL-NDSTLERTDGLRKRLNK-EMRVLIILDNIWTKLE---------KD--DQ---ERCTIVLISRSRD 215 (309)
Q Consensus 156 ~~~l~~~~~~-~~~~~~~~~~l~~~L~~-~~r~LlVlDdv~~~~~---------~~--~~---~gs~iliTtR~~~ 215 (309)
+..++..... ..+.......+.+.+.. +++.+||||+++.... .. .. .+..+|++|+...
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 9998765432 23556666777776642 3378999999987633 11 11 4677888888763
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=2e-09 Score=94.66 Aligned_cols=168 Identities=14% Similarity=0.099 Sum_probs=98.1
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFD 158 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 158 (309)
|.....++|++..++.|.+++.....+.+.|+|++|+|||++|+.+++...........++++.+.......+ ++++..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 95 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKH 95 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHH
Confidence 4455789999999999999998766555999999999999999999988643311123445554443332222 222222
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------CCCCCCcEEEEeeCCccccccc-cCCCceE
Q 043850 159 LGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE----------KDDQERCTIVLISRSRDLLCND-MNSQKDF 227 (309)
Q Consensus 159 l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~----------~~~~~gs~iliTtR~~~v~~~~-~~~~~~~ 227 (309)
+..... .+..+++.+||+||++.... .....++.+|+||....-.... ......+
T Consensus 96 ~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i 161 (323)
T 1sxj_B 96 FAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 161 (323)
T ss_dssp HHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEE
Confidence 110000 00022378999999987543 2234567788888665321111 1112244
Q ss_pred ecC---------------CCCCCCCCcHHHHHHHHHhCCCch-HHHHHHH
Q 043850 228 WID---------------DSTRISAYQPTEHEIVERRGGLPV-APSTIAN 261 (309)
Q Consensus 228 ~l~---------------~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~a~ 261 (309)
.+. ......-..+....|++.|+|.|. |+..+..
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 162 RYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 443 011112234567889999999995 4444433
No 15
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.4e-08 Score=88.86 Aligned_cols=115 Identities=15% Similarity=0.174 Sum_probs=79.3
Q ss_pred cccchHHHHHHHHHHhh----cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccC---C-C-eEEEEEecCCCCHHHHHHH
Q 043850 84 IFDSRKEIFQVVMESLK----DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKL---F-D-KVVMAEVTQTPDYRKIEDQ 154 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f-~-~~~wv~~~~~~~~~~~~~~ 154 (309)
.+.||++++++|...|. ....+.+.|+|++|+|||++++.+++....... . . ..+.+++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 47899999999988773 456788999999999999999999998864311 1 1 4567777777888999999
Q ss_pred HHHHhCCCCCCCCCHHHHHHHHHHHH--hcCCeEEEEEeCCCCccC
Q 043850 155 FAFDLGMKLDLNDSTLERTDGLRKRL--NKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 155 i~~~l~~~~~~~~~~~~~~~~l~~~L--~~~~r~LlVlDdv~~~~~ 198 (309)
|++++................+.+.+ ..+++++++||+++....
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~ 146 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS 146 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc
Confidence 99999543211112222333333333 233579999999987644
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=3.4e-09 Score=93.28 Aligned_cols=167 Identities=11% Similarity=0.083 Sum_probs=94.3
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFD 158 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 158 (309)
|.....++|+++.++.|..++.....+.+.|+|++|+|||++|+.+++.......-...+.++.+....... +...+..
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 99 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV-IREKVKE 99 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT-THHHHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHH-HHHHHHH
Confidence 344567999999999999999877666699999999999999999998864321011233344332111111 1111110
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------CCCCCCcEEEEeeCCcccccccc-CCCceE
Q 043850 159 LGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE----------KDDQERCTIVLISRSRDLLCNDM-NSQKDF 227 (309)
Q Consensus 159 l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~----------~~~~~gs~iliTtR~~~v~~~~~-~~~~~~ 227 (309)
+... ..+...++.++|+|+++.... .....++++|+||....-..... .....+
T Consensus 100 ~~~~---------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 100 FART---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp HHHS---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred HHhh---------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 0000 001112368999999987643 23345678888887653211100 111123
Q ss_pred ecC---------------CCCCCCCCcHHHHHHHHHhCCCchHHHHHHH
Q 043850 228 WID---------------DSTRISAYQPTEHEIVERRGGLPVAPSTIAN 261 (309)
Q Consensus 228 ~l~---------------~~~~~~~~~~~~~~i~~~c~GlPLai~~~a~ 261 (309)
.+. ......-..+..+.|++.++|.|..+..+..
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 332 1111122345667888999999886554443
No 17
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.84 E-value=1.7e-08 Score=81.32 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=44.1
Q ss_pred CcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 81 DYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
....|+||+++++++.+.+.......+.|+|++|+|||+||+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999997776778899999999999999999988654
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.79 E-value=2.9e-08 Score=86.89 Aligned_cols=163 Identities=10% Similarity=0.121 Sum_probs=91.4
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFD 158 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 158 (309)
|.....++|++..++.|.+++..+..+.+.|+|++|+|||++|+.+++.......-...+.++.+......
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~--------- 83 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID--------- 83 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT---------
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH---------
Confidence 34456799999999999999877665569999999999999999999886322100112334443321110
Q ss_pred hCCCCCCCCCHHHHHHHHHHH--HhcCCeEEEEEeCCCCccC----------CCCCCCcEEEEeeCCccccccc-cCCCc
Q 043850 159 LGMKLDLNDSTLERTDGLRKR--LNKEMRVLIILDNIWTKLE----------KDDQERCTIVLISRSRDLLCND-MNSQK 225 (309)
Q Consensus 159 l~~~~~~~~~~~~~~~~l~~~--L~~~~r~LlVlDdv~~~~~----------~~~~~gs~iliTtR~~~v~~~~-~~~~~ 225 (309)
...+........ +...++.++|+|+++.... .....++.+|+||....-.... .....
T Consensus 84 ---------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 84 ---------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp ---------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred ---------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 011111111100 1112478999999976543 2234567788887665321111 11112
Q ss_pred eEecC---------------CCCCCCCCcHHHHHHHHHhCCCchHHHHH
Q 043850 226 DFWID---------------DSTRISAYQPTEHEIVERRGGLPVAPSTI 259 (309)
Q Consensus 226 ~~~l~---------------~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 259 (309)
.+.+. ......-..+....+++.++|.+..+...
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33333 11111223455677788888887654443
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.76 E-value=6.8e-08 Score=86.58 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=43.0
Q ss_pred CCcccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 80 KDYEIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.....++||+..++.|...+.... .+.+.|+|++|+|||++|+.+++....
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345679999999999999987654 467899999999999999999987754
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.75 E-value=1.5e-07 Score=81.22 Aligned_cols=50 Identities=32% Similarity=0.343 Sum_probs=41.4
Q ss_pred CCcccccchHHHHHHHHHHhhc-------------CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 80 KDYEIFDSRKEIFQVVMESLKD-------------DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
....+++|.++.+++|.+.+.. .....+.|+|++|+|||+||+.+++...
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3456789999999999887732 3557799999999999999999998764
No 21
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.67 E-value=3.6e-08 Score=79.11 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=44.4
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 80 KDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.....++||+++++.+.+.+.......+.|+|++|+|||+||+.+++....
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345679999999999999997766778899999999999999999988644
No 22
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.67 E-value=7.3e-07 Score=78.27 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=41.1
Q ss_pred CCcccccchHHHHHHHHHHhhc-----CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 80 KDYEIFDSRKEIFQVVMESLKD-----DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.....|+|++..+..+...+.. .....+.|+|++|+|||+||+.+++...
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999988887742 3456789999999999999999998764
No 23
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=2.9e-07 Score=81.77 Aligned_cols=174 Identities=13% Similarity=0.156 Sum_probs=94.9
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCC-CeEEEEEecCCCCHHHHHHHHHH
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLF-DKVVMAEVTQTPDYRKIEDQFAF 157 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~ 157 (309)
|.....++|+++.++.|..++.....+.+.|+|++|+||||+|+.+++.......+ .....++.+.......+ .+...
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 111 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REKVK 111 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTHHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHHHH
Confidence 44456789999999999999977655559999999999999999999886431111 12344454443333332 22222
Q ss_pred Hh-CCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------CCCCCCcEEEEeeCCccccccc-cCCCc
Q 043850 158 DL-GMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE----------KDDQERCTIVLISRSRDLLCND-MNSQK 225 (309)
Q Consensus 158 ~l-~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~----------~~~~~gs~iliTtR~~~v~~~~-~~~~~ 225 (309)
.+ .......... ........++-+|++|++..... ......+++|++|....-.... .....
T Consensus 112 ~~~~~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 112 NFARLTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHHHSCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHhhhcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 11 1111000000 00111112357999999876543 2223456677777554311100 01112
Q ss_pred eEecC---------------CCCCCCCCcHHHHHHHHHhCCCchHHHHH
Q 043850 226 DFWID---------------DSTRISAYQPTEHEIVERRGGLPVAPSTI 259 (309)
Q Consensus 226 ~~~l~---------------~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 259 (309)
.+.+. ......-..+..+.|++.++|.|-.+..+
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33332 11122234567788999999998765443
No 24
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.53 E-value=9e-07 Score=83.02 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=49.6
Q ss_pred CCCcccccchHHHHHHHHHHhhc-----------------CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEE
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKD-----------------DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAE 141 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 141 (309)
|.....++|+++.+++|.+++.. ...+.+.|+|++|+|||+||+.+++... + .++.++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEe
Confidence 44567899999999999999854 1347899999999999999999998763 2 234555
Q ss_pred ecCCCCH
Q 043850 142 VTQTPDY 148 (309)
Q Consensus 142 ~~~~~~~ 148 (309)
.+.....
T Consensus 110 ~s~~~~~ 116 (516)
T 1sxj_A 110 ASDVRSK 116 (516)
T ss_dssp TTSCCCH
T ss_pred CCCcchH
Confidence 5554443
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.52 E-value=2.3e-06 Score=74.15 Aligned_cols=95 Identities=16% Similarity=0.132 Sum_probs=60.7
Q ss_pred CcccccchHHHHHHHHHHhhc------------CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCH
Q 043850 81 DYEIFDSRKEIFQVVMESLKD------------DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDY 148 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 148 (309)
....++|.+..++.|.+.+.. .....+.|+|++|+|||+||+.+++..... .+.++.+.-..
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~-----~~~i~~~~l~~- 92 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT-----FLNISAASLTS- 92 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE-----EEEEESTTTSS-
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEeeHHHHhh-
Confidence 456789999999999887632 235789999999999999999999876422 23344432110
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 043850 149 RKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 149 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
.. ..........+........+.+|+||++...
T Consensus 93 -------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 125 (297)
T 3b9p_A 93 -------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSL 125 (297)
T ss_dssp -------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGT
T ss_pred -------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHh
Confidence 00 0122333333333333334789999999665
No 26
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.52 E-value=1.8e-06 Score=79.33 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=44.5
Q ss_pred CCCcccccchHHHH---HHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIF---QVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|.....++|.+..+ ..|...+.....+.+.|+|++|+||||||+.+++....
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 44567899999988 78888887777788999999999999999999987643
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.52 E-value=3.3e-06 Score=71.67 Aligned_cols=49 Identities=29% Similarity=0.219 Sum_probs=37.4
Q ss_pred CcccccchHHHHHHHHHHh---hc---------CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 81 DYEIFDSRKEIFQVVMESL---KD---------DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+++|.++.++.|.+.+ .. ...+.+.|+|++|+|||+||+.+++...
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457889888777776554 21 2346688999999999999999998764
No 28
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.50 E-value=4.3e-07 Score=75.92 Aligned_cols=62 Identities=13% Similarity=0.210 Sum_probs=45.3
Q ss_pred Ccccccch---HHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 043850 81 DYEIFDSR---KEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 81 ~~~~~~gR---~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
....|+|+ +..++.+..+......+.+.|+|++|+|||+||+.+++..... ...+.|++++.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~ 90 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGI 90 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGG
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHH
Confidence 34567764 3666777776655567889999999999999999999887654 34556776643
No 29
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.48 E-value=5.6e-06 Score=74.77 Aligned_cols=51 Identities=22% Similarity=0.209 Sum_probs=41.1
Q ss_pred CCCcccccchHHHHHHHHHHhhc------------CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKD------------DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+....+++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++...
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 34457899999999999888721 2347899999999999999999987653
No 30
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.47 E-value=5.9e-07 Score=72.02 Aligned_cols=110 Identities=14% Similarity=0.143 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhhc---CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 043850 88 RKEIFQVVMESLKD---DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD 164 (309)
Q Consensus 88 R~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 164 (309)
.++.++.+.+++.+ .....+.|+|++|+|||||++.+++.......+. +++++ ..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH
Confidence 45555555555532 2357899999999999999999999876332222 23333 44555555444322111
Q ss_pred CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc-cC------------CCCCCCcEEEEeeCCcc
Q 043850 165 LNDSTLERTDGLRKRLNKEMRVLIILDNIWTK-LE------------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 165 ~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~-~~------------~~~~~gs~iliTtR~~~ 215 (309)
. .+.+.+.+ .-+|||||+... .+ .....+..+|+||....
T Consensus 92 ~---------~~~~~~~~--~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 92 T---------KFLKTVLN--SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp S---------HHHHHHHT--CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred H---------HHHHHhcC--CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 0 22233333 578999999743 22 11225677888887663
No 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.46 E-value=2.3e-06 Score=76.40 Aligned_cols=49 Identities=22% Similarity=0.184 Sum_probs=40.3
Q ss_pred CcccccchHHHHHHHHHHhh------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 81 DYEIFDSRKEIFQVVMESLK------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
....++|.+..++.|.+.+. ....+.|.|+|++|+|||+||+.+++...
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 44678999999999988773 13467899999999999999999988753
No 32
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=8.8e-06 Score=74.13 Aligned_cols=94 Identities=18% Similarity=0.184 Sum_probs=59.4
Q ss_pred ccccchHHHHHHHHHHhh-------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHH
Q 043850 83 EIFDSRKEIFQVVMESLK-------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYR 149 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 149 (309)
.++.|-++.+++|.+.+. -..++-|.++|++|+|||.||+.+++..... .+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc--
Confidence 456788888777766652 1246789999999999999999999987653 23444433211
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc
Q 043850 150 KIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKL 197 (309)
Q Consensus 150 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~ 197 (309)
... .........+........+++|++|+++...
T Consensus 254 ------------k~~--Gese~~ir~~F~~A~~~~P~IifiDEiDai~ 287 (437)
T 4b4t_L 254 ------------KYI--GESARIIREMFAYAKEHEPCIIFMDEVDAIG 287 (437)
T ss_dssp ------------SSS--SHHHHHHHHHHHHHHHSCSEEEEEECCCSSS
T ss_pred ------------ccc--hHHHHHHHHHHHHHHhcCCceeeeecccccc
Confidence 000 1112233333333334458999999997653
No 33
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=9.8e-06 Score=73.19 Aligned_cols=95 Identities=20% Similarity=0.167 Sum_probs=59.1
Q ss_pred cccccchHHHHHHHHHHhh----c---------CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCH
Q 043850 82 YEIFDSRKEIFQVVMESLK----D---------DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDY 148 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 148 (309)
..++.|-++..++|.+.+. . ..++-|.++|++|+|||.||+.+++..... .+.++.++-.
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l~-- 253 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSELI-- 253 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGGC--
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHhh--
Confidence 3456788888777776652 1 245789999999999999999999987654 2333333211
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc
Q 043850 149 RKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKL 197 (309)
Q Consensus 149 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~ 197 (309)
.... ...+.....+........+++|++|+++...
T Consensus 254 ------------sk~v--Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~ 288 (437)
T 4b4t_I 254 ------------QKYL--GDGPRLCRQIFKVAGENAPSIVFIDEIDAIG 288 (437)
T ss_dssp ------------CSSS--SHHHHHHHHHHHHHHHTCSEEEEEEEESSSS
T ss_pred ------------hccC--chHHHHHHHHHHHHHhcCCcEEEEehhhhhc
Confidence 0000 1122333334444434458999999997653
No 34
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=4.7e-06 Score=74.89 Aligned_cols=94 Identities=17% Similarity=0.143 Sum_probs=59.4
Q ss_pred ccccchHHHHHHHHHHhh-------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHH
Q 043850 83 EIFDSRKEIFQVVMESLK-------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYR 149 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 149 (309)
.++.|-++.+++|.+.+. -..++-|.++|++|+|||.||+.+++..... .+.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhhc--
Confidence 456788888888776652 1245779999999999999999999987654 23444432111
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc
Q 043850 150 KIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKL 197 (309)
Q Consensus 150 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~ 197 (309)
... ...+.....+.+......+++|+||+++...
T Consensus 221 ------------k~v--Gese~~vr~lF~~Ar~~aP~IIFiDEiDai~ 254 (405)
T 4b4t_J 221 ------------KYI--GEGSRMVRELFVMAREHAPSIIFMDEIDSIG 254 (405)
T ss_dssp ------------SST--THHHHHHHHHHHHHHHTCSEEEEEESSSCCT
T ss_pred ------------ccc--chHHHHHHHHHHHHHHhCCceEeeecchhhc
Confidence 000 1112233333333334458999999997653
No 35
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.44 E-value=2.4e-06 Score=75.16 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=60.3
Q ss_pred CCcccccchHHHHHHHHHHhh------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 043850 80 KDYEIFDSRKEIFQVVMESLK------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPD 147 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 147 (309)
....+++|.++.++.|.+.+. ....+-+.|+|++|+|||+||+.+++..... .+.++.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchH----
Confidence 345678999999999988772 1124679999999999999999999876432 2333322
Q ss_pred HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 043850 148 YRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 148 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
++.. . .. .........+.+.....++.+|+||+++..
T Consensus 86 --~l~~----~----~~--g~~~~~~~~~f~~a~~~~~~vl~iDEid~l 122 (322)
T 3eie_A 86 --DLVS----K----WM--GESEKLVKQLFAMARENKPSIIFIDQVDAL 122 (322)
T ss_dssp --HHHT----T----TG--GGHHHHHHHHHHHHHHTSSEEEEEECGGGG
T ss_pred --HHhh----c----cc--chHHHHHHHHHHHHHhcCCeEEEechhhhh
Confidence 1110 0 00 112233333444443334789999999754
No 36
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.44 E-value=1.6e-05 Score=69.86 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=59.4
Q ss_pred CcccccchHHHHHHHHHHhh------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCH
Q 043850 81 DYEIFDSRKEIFQVVMESLK------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDY 148 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 148 (309)
...++.|-++.++.|.+.+. ....+.|.|+|++|+|||+||+.+++..... ..+.++.+.-.+
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~~- 84 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLVS- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHHh-
Confidence 34678899988888877652 1234789999999999999999999876211 223344332110
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 043850 149 RKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 149 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
.. . .........+.+.....++.+|+||+++..
T Consensus 85 -------------~~-~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l 117 (322)
T 1xwi_A 85 -------------KW-L-GESEKLVKNLFQLARENKPSIIFIDEIDSL 117 (322)
T ss_dssp -------------SS-C-CSCHHHHHHHHHHHHHTSSEEEEEETTTGG
T ss_pred -------------hh-h-hHHHHHHHHHHHHHHhcCCcEEEeecHHHh
Confidence 00 0 111233333444443334799999999775
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.42 E-value=2.3e-06 Score=73.35 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=34.4
Q ss_pred ccccchHHHHHHHHH-------Hhh---cCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 83 EIFDSRKEIFQVVME-------SLK---DDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~-------~L~---~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..++|....++++.. .+. ......+.|+|++|+|||+||+.+++...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 356677666555554 232 34567899999999999999999998743
No 38
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.39 E-value=1.1e-06 Score=71.72 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhhcC----CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 043850 88 RKEIFQVVMESLKDD----KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKL 163 (309)
Q Consensus 88 R~~~~~~l~~~L~~~----~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 163 (309)
+...++.+.+++... ....+.|+|++|+|||+||+.+++..... ...++|++++ .+...+...+..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc--
Confidence 334555666665433 12789999999999999999999887654 3445666543 444444332211
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC--------------CCCCCCcEEEEeeCCc
Q 043850 164 DLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE--------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 164 ~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~--------------~~~~~gs~iliTtR~~ 214 (309)
.... .+.+.+... -+|||||++.... .....+..+|+||...
T Consensus 104 ---~~~~----~~~~~~~~~--~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 ---QTMN----EKLDYIKKV--PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ---CCCH----HHHHHHHHS--SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred ---chHH----HHHHHhcCC--CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 1112 223334432 4999999954221 1112455688888765
No 39
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=5.4e-06 Score=75.45 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=39.8
Q ss_pred cccccchHHHHHHHHHHhh----c---------CCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 82 YEIFDSRKEIFQVVMESLK----D---------DKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
..++.|-++..++|.+.+. . ..++-|.++|++|+|||.||+.+++.....
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 4567898888888877642 1 246789999999999999999999987653
No 40
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.36 E-value=1.7e-06 Score=76.01 Aligned_cols=114 Identities=12% Similarity=0.102 Sum_probs=72.2
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHH
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAF 157 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 157 (309)
|....+++|+++.++.|.+++.... ..++.+.|++|+|||++|+.+++.... ..+.++.+.. ... .+..++.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~-~~~-~i~~~~~ 94 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDC-KID-FVRGPLT 94 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTC-CHH-HHHTHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEccccc-CHH-HHHHHHH
Confidence 4456789999999999999997654 467788888999999999999887642 2445554332 222 2222221
Q ss_pred HhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc-C----------CCCCCCcEEEEeeCCcc
Q 043850 158 DLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKL-E----------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 158 ~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~-~----------~~~~~gs~iliTtR~~~ 215 (309)
........ .+ ++.+|++|++.... . .....++.+|+||....
T Consensus 95 ~~~~~~~~---------------~~-~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 95 NFASAASF---------------DG-RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp HHHHBCCC---------------SS-CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred HHHhhccc---------------CC-CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 11000000 11 37899999998876 3 12224567888877653
No 41
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.35 E-value=1.7e-05 Score=69.03 Aligned_cols=49 Identities=24% Similarity=0.300 Sum_probs=39.4
Q ss_pred CcccccchHHHHHHHHHHhhc-------------CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 81 DYEIFDSRKEIFQVVMESLKD-------------DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+++|.++.+++|.+.+.. .....+.|+|++|+|||+||+.+++...
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 345788999888888776632 3457899999999999999999998764
No 42
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.34 E-value=4.7e-07 Score=70.05 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHHHhhc--CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 84 IFDSRKEIFQVVMESLKD--DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 578999999998887742 3345678999999999999999987643
No 43
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=3.9e-06 Score=74.57 Aligned_cols=50 Identities=18% Similarity=0.263 Sum_probs=41.8
Q ss_pred CCCcccccchHHHHHHHHHHh-hcCCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 79 VKDYEIFDSRKEIFQVVMESL-KDDKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
|.....++|++..++.|.+++ .....+.+.|+|+.|+||||+|+.++...
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999988 65554449999999999999999999854
No 44
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1.3e-05 Score=73.17 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=59.7
Q ss_pred ccccchHHHHHHHHHHhh-------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHH
Q 043850 83 EIFDSRKEIFQVVMESLK-------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYR 149 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 149 (309)
.++.|-++.+++|.+.+. -..++-|.++|++|+|||.||+.+++..... .+.++.+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhhc--
Confidence 467888888888876541 1356889999999999999999999987653 23444332110
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc
Q 043850 150 KIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKL 197 (309)
Q Consensus 150 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~ 197 (309)
... ...+.....+........+++|++|+++...
T Consensus 282 ------------k~v--Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~ 315 (467)
T 4b4t_H 282 ------------KYV--GEGARMVRELFEMARTKKACIIFFDEIDAVG 315 (467)
T ss_dssp ------------CSS--SHHHHHHHHHHHHHHHTCSEEEEEECCTTTS
T ss_pred ------------ccC--CHHHHHHHHHHHHHHhcCCceEeeccccccc
Confidence 000 1112233333333334458999999997653
No 45
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.3e-05 Score=72.81 Aligned_cols=93 Identities=19% Similarity=0.186 Sum_probs=58.1
Q ss_pred cccccchHHHHHHHHHHhh-------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCH
Q 043850 82 YEIFDSRKEIFQVVMESLK-------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDY 148 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 148 (309)
..++.|-++..++|.+.+. -..++-|.++|++|+|||+||+.+++..... .+.++.++-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~- 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH- 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc-
Confidence 3467888888888877652 1245679999999999999999999987643 23444443211
Q ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC
Q 043850 149 RKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWT 195 (309)
Q Consensus 149 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~ 195 (309)
... .........+........+++|++|+++.
T Consensus 245 -------------~~~--Ge~e~~ir~lF~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 245 -------------KYL--GEGPRMVRDVFRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp -------------SSC--SHHHHHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred -------------ccc--chhHHHHHHHHHHHHHcCCCeeechhhhh
Confidence 000 11122233333333333479999999964
No 46
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=7.2e-06 Score=72.60 Aligned_cols=52 Identities=21% Similarity=0.334 Sum_probs=43.5
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
|.....++|.+..++.|...+..++.+.+.++|++|+||||+|+.+++....
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4455678899999999998887776555999999999999999999988653
No 47
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.29 E-value=9.3e-06 Score=68.83 Aligned_cols=50 Identities=24% Similarity=0.235 Sum_probs=37.4
Q ss_pred CCcccccchHHHHHHHHHHh---hc---------CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 80 KDYEIFDSRKEIFQVVMESL---KD---------DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
....+++|.+..+++|.+.+ .. ...+-+.|+|++|+||||||+.+++...
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 34567899888777765543 21 1245688999999999999999998764
No 48
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.27 E-value=2.3e-05 Score=72.05 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=39.2
Q ss_pred CcccccchHHHHHHHHHHhh------------cCCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 81 DYEIFDSRKEIFQVVMESLK------------DDKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...+++|.++..+.|.+.+. ....+.|.|+|++|+|||+||+.+++..
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34678999999888887762 1235789999999999999999999876
No 49
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.23 E-value=2.9e-06 Score=73.89 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=38.3
Q ss_pred cccchHHHHHHHHHHhh---------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 84 IFDSRKEIFQVVMESLK---------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~---------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.++|.++.++.|.+.+. ......+.|+|++|+|||+||+.+++.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58899988888876653 2344579999999999999999998887654
No 50
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.23 E-value=9.2e-06 Score=72.44 Aligned_cols=49 Identities=24% Similarity=0.246 Sum_probs=39.1
Q ss_pred CcccccchHHHHHHHHHHhhc------------CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 81 DYEIFDSRKEIFQVVMESLKD------------DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+++|.++.++.|.+.+.. ...+-|.|+|++|+|||+||+.+++...
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 346789999988888877621 1235689999999999999999998874
No 51
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.21 E-value=4.7e-05 Score=67.87 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=38.6
Q ss_pred cccccchHHHHHH---HHHHhhcCCC--cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 82 YEIFDSRKEIFQV---VMESLKDDKL--KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 82 ~~~~~gR~~~~~~---l~~~L~~~~~--~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
...|+|++...+. +.+.+..... +.+.|+|++|+|||+||+.+++....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5689999988666 4444444433 58999999999999999999998764
No 52
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.20 E-value=2.3e-05 Score=69.15 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=42.0
Q ss_pred CCCcccccchHHHHHHHHHHhhc-----CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 79 VKDYEIFDSRKEIFQVVMESLKD-----DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 79 ~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
|.....|+|++..++.+..++.. .....|.|+|++|+|||+||+.+++...
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 34567899999999999888842 3456789999999999999999987754
No 53
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.19 E-value=9.1e-06 Score=74.61 Aligned_cols=116 Identities=17% Similarity=0.245 Sum_probs=68.6
Q ss_pred cccc-chH--HHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 043850 83 EIFD-SRK--EIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFD 158 (309)
Q Consensus 83 ~~~~-gR~--~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 158 (309)
..|+ |.. .....+.......+ ...+.|+|++|+||||||+.+++.......-..+++++.. .+..++...
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~ 178 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDS 178 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHH
Confidence 4566 533 33344444444433 6789999999999999999999987554111234565543 334444444
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCc
Q 043850 159 LGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 159 l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~ 214 (309)
+... . ...+...+..+ +.+|+|||+..... .....|..||+||...
T Consensus 179 ~~~~-----~----~~~~~~~~~~~-~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 179 MKEG-----K----LNEFREKYRKK-VDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HHTT-----C----HHHHHHHHTTT-CSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred HHcc-----c----HHHHHHHhcCC-CCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4221 1 12233344423 57999999966542 1134577899998875
No 54
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.18 E-value=3.7e-05 Score=71.37 Aligned_cols=47 Identities=23% Similarity=0.348 Sum_probs=39.0
Q ss_pred cccccchHHHHHHHHHHhh-------------cCCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 82 YEIFDSRKEIFQVVMESLK-------------DDKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...++|.+..+++|.+.+. .....-|.|+|++|+|||+||+.+++..
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 4568999999999988773 2345679999999999999999998765
No 55
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.15 E-value=9.5e-06 Score=80.66 Aligned_cols=103 Identities=19% Similarity=0.281 Sum_probs=61.7
Q ss_pred CcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccC-----CCeEEEEEecCCCCHHHHHHHH
Q 043850 81 DYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKL-----FDKVVMAEVTQTPDYRKIEDQF 155 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i 155 (309)
....++||++++.++.+.|.......+.|+|.+|+|||+||+.+++....... -..+++++++.-..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------- 239 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------- 239 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred CCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--------
Confidence 44578999999999999997766667899999999999999999998743211 11344444322110
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhc-CCeEEEEEeCCCCcc
Q 043850 156 AFDLGMKLDLNDSTLERTDGLRKRLNK-EMRVLIILDNIWTKL 197 (309)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~~l~~~L~~-~~r~LlVlDdv~~~~ 197 (309)
+... ..........+.+.+.. .++.+|++|++....
T Consensus 240 ----g~~~--~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~ 276 (854)
T 1qvr_A 240 ----GAKY--RGEFEERLKAVIQEVVQSQGEVILFIDELHTVV 276 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC----
T ss_pred ----cCcc--chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHh
Confidence 0000 01223333344444432 247999999997654
No 56
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.13 E-value=1.1e-05 Score=74.57 Aligned_cols=50 Identities=24% Similarity=0.310 Sum_probs=43.3
Q ss_pred CcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 81 DYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
....++||+++++.+...+......-+.|+|++|+|||+||+.+++....
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 34578999999999999997666677889999999999999999988743
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.12 E-value=4.7e-05 Score=74.72 Aligned_cols=102 Identities=18% Similarity=0.288 Sum_probs=66.0
Q ss_pred CcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhccc----CCCeEEE-EEecCCCCHHHHHHHH
Q 043850 81 DYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDK----LFDKVVM-AEVTQTPDYRKIEDQF 155 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~w-v~~~~~~~~~~~~~~i 155 (309)
....++||+++++++.+.|.......+.|+|.+|+|||++|+.+++...... .....+| ++++.-
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 3457899999999999999877777889999999999999999998764321 1233332 222110
Q ss_pred HHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 043850 156 AFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 156 ~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
+... ......+.....+.+.+...++.+|++|++...
T Consensus 254 ---~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l 290 (758)
T 1r6b_X 254 ---LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTI 290 (758)
T ss_dssp ----CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTT
T ss_pred ---hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHH
Confidence 0000 111233444455555554434699999999865
No 58
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.10 E-value=5.9e-05 Score=69.59 Aligned_cols=50 Identities=28% Similarity=0.285 Sum_probs=37.0
Q ss_pred CcccccchHHHHHHHHHHh---hc---------CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 81 DYEIFDSRKEIFQVVMESL---KD---------DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
...+++|.++.+++|.+.+ .. .-++-|.|+|++|+|||+||+.+++....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~ 75 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV 75 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3467889888766666554 22 12356889999999999999999987643
No 59
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.10 E-value=5.8e-05 Score=66.60 Aligned_cols=43 Identities=12% Similarity=0.269 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhhcCC-CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 88 RKEIFQVVMESLKDDK-LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 88 R~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.++..+.|...+..++ .+.+.++|+.|+|||++|+.+++....
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 4566777887776655 467999999999999999999987653
No 60
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.10 E-value=1.3e-06 Score=67.44 Aligned_cols=46 Identities=9% Similarity=-0.041 Sum_probs=33.6
Q ss_pred ccccchHHHHHHHHHHhhc--CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 83 EIFDSRKEIFQVVMESLKD--DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..++|++..++++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3578998888888887642 334568899999999999999987643
No 61
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.07 E-value=1.3e-05 Score=70.36 Aligned_cols=114 Identities=20% Similarity=0.232 Sum_probs=65.0
Q ss_pred ccccc-c--hHHHHHHHHHHhhcC--CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHH
Q 043850 82 YEIFD-S--RKEIFQVVMESLKDD--KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFA 156 (309)
Q Consensus 82 ~~~~~-g--R~~~~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 156 (309)
...|+ | .......+...+... ....+.|+|++|+||||||+.+++..... -..+++++.. .+...+.
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~~ 81 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMV 81 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHHH
Confidence 34555 4 333344455555443 34689999999999999999999887543 1234555532 3333333
Q ss_pred HHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCc
Q 043850 157 FDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 157 ~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~ 214 (309)
..+.. .. ...+...+.. ..+|+||++..... .....+..+|+||...
T Consensus 82 ~~~~~-----~~----~~~~~~~~~~--~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 82 EHLKK-----GT----INEFRNMYKS--VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHHHH-----TC----HHHHHHHHHT--CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHc-----Cc----HHHHHHHhcC--CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 33321 01 1122333332 57999999966542 1223456788888654
No 62
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.00 E-value=4.7e-06 Score=71.09 Aligned_cols=50 Identities=26% Similarity=0.229 Sum_probs=36.4
Q ss_pred CcccccchHHHHHHHHHHhh---c---------CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 81 DYEIFDSRKEIFQVVMESLK---D---------DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
....++|.++.++.|.+.+. . ...+-+.|+|++|+|||+||+.+++....
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34568888776666665542 1 22345789999999999999999987654
No 63
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.95 E-value=1.5e-05 Score=69.30 Aligned_cols=108 Identities=17% Similarity=0.220 Sum_probs=63.5
Q ss_pred ccccchHHHHHHHHHHhhcC---------CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHH
Q 043850 83 EIFDSRKEIFQVVMESLKDD---------KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIED 153 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 153 (309)
..++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..... -...+.++++.......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~--- 91 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA--- 91 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH---
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc---
Confidence 35779999888888777431 13579999999999999999999877542 12345566654332111
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 154 QFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 154 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
....++..... ..... ...+...+......+|+||+++....
T Consensus 92 -~~~l~g~~~~~-~~~~~-~~~~~~~~~~~~~~vl~lDEi~~l~~ 133 (311)
T 4fcw_A 92 -VSRLIGAPPGY-VGYEE-GGQLTEAVRRRPYSVILFDAIEKAHP 133 (311)
T ss_dssp -HHHHHCCCTTS-TTTTT-CCHHHHHHHHCSSEEEEEETGGGSCH
T ss_pred -HHHhcCCCCcc-ccccc-cchHHHHHHhCCCeEEEEeChhhcCH
Confidence 11123332221 00000 01233444333358999999977643
No 64
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=6.1e-05 Score=65.60 Aligned_cols=109 Identities=15% Similarity=0.069 Sum_probs=66.9
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc--cCCCeEEEEEecC-CCCHHHHHHHHHHHhCCCC
Q 043850 87 SRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMED--KLFDKVVMAEVTQ-TPDYRKIEDQFAFDLGMKL 163 (309)
Q Consensus 87 gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 163 (309)
|-++.++.|...+..++.+.+.++|++|+|||++|..+++..... .+.+ ..+++.++ ...++. .+++...+...+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHHHhhcc
Confidence 345567777888776667889999999999999999998753211 1333 35555443 333333 334555444322
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC----------CCCCCCcEEEEeeCCc
Q 043850 164 DLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE----------KDDQERCTIVLISRSR 214 (309)
Q Consensus 164 ~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~----------~~~~~gs~iliTtR~~ 214 (309)
.. + ++-++|+|+++.... ......+.+|++|.++
T Consensus 79 ~~----------------~-~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~ 122 (305)
T 2gno_A 79 EL----------------Y-TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 122 (305)
T ss_dssp SS----------------S-SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred cc----------------C-CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECCh
Confidence 21 2 367889999977654 2334566777777555
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.90 E-value=4e-05 Score=75.22 Aligned_cols=49 Identities=24% Similarity=0.310 Sum_probs=43.1
Q ss_pred CcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 81 DYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
....++||+++++++...|......-+.++|++|+|||++|+.+++...
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999776667789999999999999999998863
No 66
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.88 E-value=6.5e-05 Score=73.41 Aligned_cols=94 Identities=15% Similarity=0.179 Sum_probs=55.8
Q ss_pred ccccchHHHHHHHHHHh----hc---------CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHH
Q 043850 83 EIFDSRKEIFQVVMESL----KD---------DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYR 149 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L----~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 149 (309)
.++.|-++.+++|.+.+ .. ..++-|.++|++|+|||+||+.+++..... .+.++.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHH-----
Confidence 45667766666665554 11 245779999999999999999999866532 34444321
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc
Q 043850 150 KIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKL 197 (309)
Q Consensus 150 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~ 197 (309)
+. +. .. ...+.....+.+......+++|+||+++...
T Consensus 274 -----l~---sk-~~--gese~~lr~lF~~A~~~~PsIIfIDEiDal~ 310 (806)
T 3cf2_A 274 -----IM---SK-LA--GESESNLRKAFEEAEKNAPAIIFIDELDAIA 310 (806)
T ss_dssp -----HH---SS-CT--THHHHHHHHHHHHHTTSCSEEEEEESGGGTC
T ss_pred -----hh---cc-cc--hHHHHHHHHHHHHHHHcCCeEEEEehhcccc
Confidence 11 10 00 1112233333333333458999999997754
No 67
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.87 E-value=1.6e-05 Score=61.73 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=29.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEec
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT 143 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 143 (309)
....+.|+|..|+|||||++.++...... .+ .+++++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHH
Confidence 45789999999999999999999987642 12 25666544
No 68
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.86 E-value=8.1e-05 Score=66.05 Aligned_cols=85 Identities=18% Similarity=0.251 Sum_probs=59.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----NDSTLERTDGLRK 178 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 178 (309)
-.++.|.|++|+||||||.+++...... -..++|++....++.. .++.++..... ..+.++....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 4799999999999999999999876543 2357888877766654 45666655322 3456666666666
Q ss_pred HHhcCCeEEEEEeCCCC
Q 043850 179 RLNKEMRVLIILDNIWT 195 (309)
Q Consensus 179 ~L~~~~r~LlVlDdv~~ 195 (309)
.+...+.-++|+|.+..
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 66544457899999744
No 69
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.86 E-value=0.00011 Score=63.65 Aligned_cols=88 Identities=9% Similarity=0.054 Sum_probs=60.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHH-HHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----NDSTLER-TDGLRK 178 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~l~~ 178 (309)
.++.|.|.+|+|||||+.+++........=..++|++....++.. .+++++.+.+. +.+.++. ...+..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 378999999999999999998776543112468999988777753 37778876543 3455555 333322
Q ss_pred H--HhcCCeEEEEEeCCCCcc
Q 043850 179 R--LNKEMRVLIILDNIWTKL 197 (309)
Q Consensus 179 ~--L~~~~r~LlVlDdv~~~~ 197 (309)
. +...+.-|||+|-+....
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCB
T ss_pred HHHhhccCceEEEEecccccc
Confidence 2 344457899999997664
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.85 E-value=0.00015 Score=61.20 Aligned_cols=49 Identities=27% Similarity=0.272 Sum_probs=34.2
Q ss_pred CcccccchHHHHHHHHHHh---hc---------CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 81 DYEIFDSRKEIFQVVMESL---KD---------DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+++|.++...++.+.. .. .-.+-+.|+|++|+|||||++.++....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4457888776655554432 11 1123389999999999999999998764
No 71
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.81 E-value=9.4e-05 Score=61.17 Aligned_cols=106 Identities=17% Similarity=0.104 Sum_probs=62.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC------------------
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL------------------ 165 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------------------ 165 (309)
-.+++|.|.+|+|||||++.++...... -..++|++... ....+...+ ..++.....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCc
Confidence 3689999999999999999998766533 23466666543 344444333 244332110
Q ss_pred -----CCCHHHHHHHHHHHHhcCCeE--EEEEeCCCCcc--C-------------CCCCCCcEEEEeeCCc
Q 043850 166 -----NDSTLERTDGLRKRLNKEMRV--LIILDNIWTKL--E-------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 166 -----~~~~~~~~~~l~~~L~~~~r~--LlVlDdv~~~~--~-------------~~~~~gs~iliTtR~~ 214 (309)
..+..+....+...+...++- +||+|.+.... + .....++.||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 114455555555555332234 99999987443 2 1223577899988876
No 72
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.80 E-value=0.00017 Score=59.20 Aligned_cols=86 Identities=21% Similarity=0.218 Sum_probs=53.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCC-----------C-CCCCCHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMK-----------L-DLNDSTLE 171 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----------~-~~~~~~~~ 171 (309)
-.++.|+|.+|+|||||+..++. . . -..++|++.....+...+.. ++..++.. . ........
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~--~--~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L--S--GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H--H--CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H--c--CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46899999999999999999988 1 1 35688888776556554433 33333221 1 11111123
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCCc
Q 043850 172 RTDGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 172 ~~~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
....++..+.. +.-+||+|.+...
T Consensus 94 ~~~~~~~l~~~-~~~lliiD~~~~~ 117 (220)
T 2cvh_A 94 VIGSLKKTVDS-NFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHCCT-TEEEEEEECCCCC
T ss_pred HHHHHHHHhhc-CCCEEEEcCcHHH
Confidence 44444444444 3789999998654
No 73
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.80 E-value=0.00043 Score=64.21 Aligned_cols=49 Identities=27% Similarity=0.269 Sum_probs=36.0
Q ss_pred CcccccchHHHHHHHHHHh---hcC---------CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 81 DYEIFDSRKEIFQVVMESL---KDD---------KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L---~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+++|.++.+.++.+.. ... -.+-+.|+|++|+|||+||+.++....
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567889887766665543 221 134489999999999999999998764
No 74
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.76 E-value=0.00017 Score=60.09 Aligned_cols=92 Identities=14% Similarity=0.034 Sum_probs=58.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhccc----CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDK----LFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD---------LNDSTL 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 170 (309)
-.++.|+|.+|+|||||+..++....... .-..++|++....+....+ ..++..++.... ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 47999999999999999999988533211 1257889987775555443 344555554321 112223
Q ss_pred H---HHHHHHHHHhcCCeEEEEEeCCCCc
Q 043850 171 E---RTDGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 171 ~---~~~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
+ ....+.+.+...+.-+||+|++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 2 2334555565445789999998654
No 75
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.74 E-value=0.00014 Score=64.43 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=58.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----NDSTLERTDGLRK 178 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 178 (309)
-.++.|.|.+|+||||||.+++...... =..++|++....++.. .++.++..... +.+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 4789999999999999999998776543 2468899987766543 35566654321 2345555555555
Q ss_pred HHhcCCeEEEEEeCCCCc
Q 043850 179 RLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 179 ~L~~~~r~LlVlDdv~~~ 196 (309)
.....+.-+||+|.+...
T Consensus 134 l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHTTTCCSEEEEECGGGC
T ss_pred HHhcCCCCEEEEcChHhh
Confidence 554444679999998554
No 76
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.68 E-value=0.00024 Score=63.41 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=58.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC-----CCCCHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD-----LNDSTLERTDGLRK 178 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 178 (309)
-.++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++.+.. .+.+.++....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4689999999999999999998776543 2468999988766643 2455665432 12455666666665
Q ss_pred HHhcCCeEEEEEeCCCC
Q 043850 179 RLNKEMRVLIILDNIWT 195 (309)
Q Consensus 179 ~L~~~~r~LlVlDdv~~ 195 (309)
.......-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 55544456999999843
No 77
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.62 E-value=0.00047 Score=61.00 Aligned_cols=92 Identities=16% Similarity=0.252 Sum_probs=59.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhccc----CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC------------CC
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDK----LFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD------------LN 166 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~ 166 (309)
.-.++.|+|.+|+|||+||.+++....... .-..++|++....++...+. .++..++.... ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 347899999999999999999988643211 12478999988877766554 34555554321 11
Q ss_pred CCHHHHHHHHHHHHhc--CCeEEEEEeCCCC
Q 043850 167 DSTLERTDGLRKRLNK--EMRVLIILDNIWT 195 (309)
Q Consensus 167 ~~~~~~~~~l~~~L~~--~~r~LlVlDdv~~ 195 (309)
....+....+...+.. .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1122344455566654 4467999999854
No 78
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.61 E-value=6.7e-05 Score=64.94 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.+..+.++|++|+|||+||+.+++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568889999999999999999998753
No 79
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.61 E-value=9.9e-05 Score=72.77 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=38.0
Q ss_pred cccccchHHHHHHHHHHhhc-------------CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 82 YEIFDSRKEIFQVVMESLKD-------------DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+++|.++.+++|.+++.. .....|.|+|++|+||||||+.++....
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 35678988888888777632 2356799999999999999999987654
No 80
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.61 E-value=0.00026 Score=62.89 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=57.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----NDSTLERTDGLR 177 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 177 (309)
.-.++.|.|.+|+||||||.+++...... -..++|++....++.. .+..++..... +.+.++....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 34789999999999999999998876543 2468899987776643 24556654321 233445555554
Q ss_pred HHHhcCCeEEEEEeCCCC
Q 043850 178 KRLNKEMRVLIILDNIWT 195 (309)
Q Consensus 178 ~~L~~~~r~LlVlDdv~~ 195 (309)
......+.-+||+|.+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 444333356999999744
No 81
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.61 E-value=0.00039 Score=59.49 Aligned_cols=49 Identities=27% Similarity=0.272 Sum_probs=35.0
Q ss_pred CcccccchHHHHHHHHHHh---hc---------CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 81 DYEIFDSRKEIFQVVMESL---KD---------DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 81 ~~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+++|.++...++.+.. .. .-.+-+.|+|++|+|||||++.++....
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 4567889887666655443 11 1123389999999999999999998764
No 82
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.60 E-value=4.3e-05 Score=66.50 Aligned_cols=71 Identities=21% Similarity=0.214 Sum_probs=47.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEe--cCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEV--TQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLN 181 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 181 (309)
.+++.|+|++|+|||+||.+++.. . -..++|+++ .+..+ . .. .+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~----G~~VlyIs~~~eE~v~-------------~--~~-~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-L----GGKDKYATVRFGEPLS-------------G--YN-TDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-H----HTTSCCEEEEBSCSST-------------T--CB-CCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-C----CCCEEEEEecchhhhh-------------h--hh-cCHHHHHHHHHHHHh
Confidence 357789999999999999999886 1 112456666 22211 0 00 345666666777777
Q ss_pred cCCeEEEEEeCCCCcc
Q 043850 182 KEMRVLIILDNIWTKL 197 (309)
Q Consensus 182 ~~~r~LlVlDdv~~~~ 197 (309)
+. + +||+|++....
T Consensus 182 ~~-~-LLVIDsI~aL~ 195 (331)
T 2vhj_A 182 QH-R-VIVIDSLKNVI 195 (331)
T ss_dssp HC-S-EEEEECCTTTC
T ss_pred hC-C-EEEEecccccc
Confidence 65 5 99999996653
No 83
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.58 E-value=0.0004 Score=60.96 Aligned_cols=91 Identities=26% Similarity=0.326 Sum_probs=60.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccC----CCeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKL----FDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD---------LNDSTL 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 170 (309)
-.++.|+|.+|+|||+||.+++........ -..++|++....++...+. .++..++.... ...+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 478999999999999999999876432210 2378999988877766654 34566655421 112333
Q ss_pred ---HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 043850 171 ---ERTDGLRKRLNK-EMRVLIILDNIWT 195 (309)
Q Consensus 171 ---~~~~~l~~~L~~-~~r~LlVlDdv~~ 195 (309)
+....+...+.. .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 344556666654 4578999999854
No 84
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.57 E-value=0.00042 Score=60.70 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=59.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhccc---------CC-----CeEEEEEecCCCCHHHHHHHHHHHhCCCCC-----
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDK---------LF-----DKVVMAEVTQTPDYRKIEDQFAFDLGMKLD----- 164 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----- 164 (309)
-.++.|.|.+|+|||+||.+++....... .. ..++|++....++...+.. +++.++.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 47899999999999999999987632110 11 4788999888777666553 4556655421
Q ss_pred ----CCCCHH---HHHHHHHHHHhc-CCeEEEEEeCCCC
Q 043850 165 ----LNDSTL---ERTDGLRKRLNK-EMRVLIILDNIWT 195 (309)
Q Consensus 165 ----~~~~~~---~~~~~l~~~L~~-~~r~LlVlDdv~~ 195 (309)
...+.+ +....+.+.+.. .+.-+||+|.+..
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 112333 244456666655 4467999999843
No 85
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.57 E-value=7.2e-05 Score=73.41 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=43.7
Q ss_pred ccccchHHHHHHHHHHhhc-------C--CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 043850 83 EIFDSRKEIFQVVMESLKD-------D--KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
..++|.+..++.+...+.. . ....+.++|++|+|||+||+.+++..... -...+.++++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechh
Confidence 4578999988888887742 1 12369999999999999999999887432 23345666554
No 86
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.49 E-value=0.00041 Score=59.35 Aligned_cols=48 Identities=21% Similarity=0.176 Sum_probs=33.5
Q ss_pred cccccchHHHHHHHHHHhh----c---------CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 82 YEIFDSRKEIFQVVMESLK----D---------DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..++.|-++..++|.+.+. . .-.+-+.|+|++|+||||||+.++....
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 3567788877777766541 1 1123399999999999999999998654
No 87
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.45 E-value=0.00024 Score=61.96 Aligned_cols=53 Identities=21% Similarity=0.333 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHhhcC---CCcEEEEEeCCCCcHHHHHHHHHHHhh-cccCCCeEEEEEe
Q 043850 88 RKEIFQVVMESLKDD---KLKVIGVYGMGGVGKTTLVKQVAMKVM-EDKLFDKVVMAEV 142 (309)
Q Consensus 88 R~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~ 142 (309)
+...++.+.+++... ....+.|+|++|+|||+||..+++... .. -..+.++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEEH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEH
Confidence 444555566666532 247889999999999999999999876 43 223455554
No 88
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.39 E-value=0.00027 Score=65.10 Aligned_cols=49 Identities=16% Similarity=0.122 Sum_probs=37.8
Q ss_pred cccccchHHHHHHHHHHh---hcC--CCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 82 YEIFDSRKEIFQVVMESL---KDD--KLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L---~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
...++|.++.++.+...+ ... ..+-+.++|++|+|||+||+.+++....
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 467899998877655443 332 3367899999999999999999998753
No 89
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.37 E-value=0.00096 Score=54.94 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=53.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcc---c-CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCCCH-
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMED---K-LFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD---------LNDST- 169 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~- 169 (309)
-.+++|+|++|+|||||++.++...... . .-...+|++......... +..+.+.++.... .....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 4799999999999999999998754321 1 123578887655444333 3334444443221 01111
Q ss_pred --HHHHHHHHHHHh-----cCCeEEEEEeCCCC
Q 043850 170 --LERTDGLRKRLN-----KEMRVLIILDNIWT 195 (309)
Q Consensus 170 --~~~~~~l~~~L~-----~~~r~LlVlDdv~~ 195 (309)
......+...+. ..++-+||||....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 112334444444 44578999999855
No 90
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.34 E-value=0.00023 Score=61.64 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=38.8
Q ss_pred ccccchHHHHHHHHHHhhc--------------CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 83 EIFDSRKEIFQVVMESLKD--------------DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..++|.++.++.|...+.. .....+.|+|++|+|||+||+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999998877743 2356788999999999999999998764
No 91
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.33 E-value=0.0002 Score=63.15 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=40.0
Q ss_pred CCcccccchHHHHHHHHHHhhc-----CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 80 KDYEIFDSRKEIFQVVMESLKD-----DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.....++|.+..++.+...+.. .....+.|+|++|+||||||+.+++....
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3456788988888877666642 24477999999999999999999988743
No 92
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.32 E-value=0.0014 Score=59.17 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=57.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhccc----CCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCCCHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDK----LFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD---------LNDSTL 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 170 (309)
-.++.|+|.+|+|||||+..++-...... .-..++|++....+....+ ..+++.++.... ...+..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 47999999999999999998764432211 1346889987776665543 346666665321 012222
Q ss_pred ---HHHHHHHHHHhcCCeEEEEEeCCCCc
Q 043850 171 ---ERTDGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 171 ---~~~~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
+....+...+...+.-+||+|.+...
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhhh
Confidence 23334445554445789999997554
No 93
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.31 E-value=0.00036 Score=56.66 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHhhc---CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 87 SRKEIFQVVMESLKD---DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 87 gR~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.|++.++.|.+.+.. ....+|+|.|..|+|||||++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467778888887753 34579999999999999999999887643
No 94
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.30 E-value=0.0016 Score=54.16 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=63.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCC--------------------
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKL-------------------- 163 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------------------- 163 (309)
-.++.|.|.+|+||||||.+++...... -..++|++.... ..++...+ ..++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~--~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~ 97 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH--PVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFTAGIG 97 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC--HHHHHHHH-HTTTCCCHHHHHHTSEEEEECSTTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHHH-HHcCCCHHHHhhCCcEEEEecchhhcc
Confidence 3689999999999999999887765432 246778776543 34433332 2222211
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC---------------CCCCCCcEEEEeeCCcc
Q 043850 164 ----------DLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE---------------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 164 ----------~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~---------------~~~~~gs~iliTtR~~~ 215 (309)
....+..+....+.+.+...+.-++|+|.+..... .....++.||+|+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 98 KSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSV 174 (247)
T ss_dssp C--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred cccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 00134445566666666433356899999865431 11234667777776543
No 95
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.30 E-value=0.0013 Score=57.32 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=36.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFA 156 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 156 (309)
-.++.|.|.+|+||||||.+++.....+. ..++|++.. .+..++...++
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~ 116 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLI 116 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHH
Confidence 47899999999999999999987765442 578888765 34444444444
No 96
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.29 E-value=0.00012 Score=60.57 Aligned_cols=109 Identities=10% Similarity=-0.038 Sum_probs=63.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL--NDSTLERTDGLRKRL 180 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~L 180 (309)
.-.++.|+|..|+||||++..++++.... -..++.+....+.. ....++..++..... .....+....+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 34788999999999999999999888654 22334443332211 112344445543222 122334444444444
Q ss_pred hcCCeEEEEEeCCCCccC-------CCCCCCcEEEEeeCCccc
Q 043850 181 NKEMRVLIILDNIWTKLE-------KDDQERCTIVLISRSRDL 216 (309)
Q Consensus 181 ~~~~r~LlVlDdv~~~~~-------~~~~~gs~iliTtR~~~v 216 (309)
...+.-+||+|.+..... .....+..||+|-+..+.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNF 128 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCT
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 334345999999976533 111137889999995543
No 97
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.26 E-value=0.0016 Score=56.29 Aligned_cols=86 Identities=20% Similarity=0.192 Sum_probs=49.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ-TPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLN 181 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 181 (309)
...+++|+|.+|+||||++..++........ ..+..+.... .....+.+.......+.+.....+.......+. .+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LFS 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hhc
Confidence 4579999999999999999999988764211 2345555432 223444444444444544322233333333333 332
Q ss_pred cCCeEEEEEeC
Q 043850 182 KEMRVLIILDN 192 (309)
Q Consensus 182 ~~~r~LlVlDd 192 (309)
+ .=++|+|-
T Consensus 182 ~--~dlvIiDT 190 (296)
T 2px0_A 182 E--YDHVFVDT 190 (296)
T ss_dssp G--SSEEEEEC
T ss_pred C--CCEEEEeC
Confidence 2 45788884
No 98
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.23 E-value=0.00044 Score=67.79 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=60.7
Q ss_pred ccccchHHHHHHHHHHhhc---------CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHH
Q 043850 83 EIFDSRKEIFQVVMESLKD---------DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIED 153 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 153 (309)
..++|.++.++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh---
Confidence 3578999988888777632 1234799999999999999999998773 2344555554322100
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC
Q 043850 154 QFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE 198 (309)
Q Consensus 154 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~ 198 (309)
+...+|.++. ....+....+.+.+......+|+||+++....
T Consensus 530 -~~~l~g~~~g--~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~ 571 (758)
T 1r6b_X 530 -VSRLIGAPPG--YVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP 571 (758)
T ss_dssp -CSSSCCCCSC--SHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH
T ss_pred -HhhhcCCCCC--CcCccccchHHHHHHhCCCcEEEEeCccccCH
Confidence 0001122111 11111112233444444468999999987544
No 99
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.23 E-value=0.00023 Score=70.70 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=42.2
Q ss_pred cccchHHHHHHHHHHhhcC---------CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 043850 84 IFDSRKEIFQVVMESLKDD---------KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
.++|.+..++.+...+... ....+.|+|++|+|||+||+.+++..... -...+.++++.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~--~~~~i~i~~~~ 626 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTE 626 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECTTT
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CCcEEEEechh
Confidence 4789999888887777321 12579999999999999999999877432 11234455544
No 100
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.19 E-value=0.00047 Score=56.31 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhc--CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 89 KEIFQVVMESLKD--DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 89 ~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
++.+++|.+.+.. ....+|+|+|..|+|||||++.+......
T Consensus 5 ~~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 5 AALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp HHHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3556667666643 35679999999999999999999887763
No 101
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.17 E-value=0.0033 Score=55.30 Aligned_cols=89 Identities=13% Similarity=0.044 Sum_probs=55.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHh------------------------
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDL------------------------ 159 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l------------------------ 159 (309)
-.++.|.|.+|+||||||.+++...... =..++|++... +..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlEm--s~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a 121 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLEM--SAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKC 121 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESSS--CHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCC--CHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHH
Confidence 3689999999999999999998876542 24677777643 3444444443221
Q ss_pred ---------CCCCCCCCCHHHHHHHHHHHHhcC-CeEEEEEeCCCCc
Q 043850 160 ---------GMKLDLNDSTLERTDGLRKRLNKE-MRVLIILDNIWTK 196 (309)
Q Consensus 160 ---------~~~~~~~~~~~~~~~~l~~~L~~~-~r~LlVlDdv~~~ 196 (309)
-.......+..++...++...... ..-+||+|.+...
T Consensus 122 ~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm 168 (338)
T 4a1f_A 122 FDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLM 168 (338)
T ss_dssp HHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECC
T ss_pred HHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHh
Confidence 001111235566666666555443 4688999977443
No 102
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.14 E-value=0.0031 Score=57.38 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=25.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.+.+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999999877653
No 103
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.12 E-value=0.00052 Score=58.16 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=40.5
Q ss_pred cccccchHHHHHHHHHHhhc--CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 043850 82 YEIFDSRKEIFQVVMESLKD--DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT 145 (309)
Q Consensus 82 ~~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 145 (309)
...++|.+..+.++.+.+.. .....|.|+|.+|+|||+||+.+++..... -...+.++++..
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~ 68 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence 34678998888888776632 334678899999999999999998765432 122455666543
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.09 E-value=0.0017 Score=68.96 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=60.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----NDSTLERTDGLR 177 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 177 (309)
..+.|.|+|++|+|||+||.+++...... =..++|+++...++... ++.++.+... +...++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45899999999999999999998866543 24678888887766555 5566644332 234455556666
Q ss_pred HHHhcCCeEEEEEeCCC
Q 043850 178 KRLNKEMRVLIILDNIW 194 (309)
Q Consensus 178 ~~L~~~~r~LlVlDdv~ 194 (309)
...+..+..+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 55555557899999984
No 105
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.09 E-value=0.0025 Score=53.10 Aligned_cols=108 Identities=16% Similarity=0.084 Sum_probs=59.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh-cccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCC------------------
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM-EDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLD------------------ 164 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------------ 164 (309)
-.+++|+|+.|+|||||++.++.... .. -...+++..... ...+. .....++....
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~~~--~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEER--ARDLR-REMASFGWDFEKYEKEGKIAIVDGVSSVV 104 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSC--HHHHH-HHHHTTTCCHHHHHHTTSEEEEC------
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEccCC--HHHHH-HHHHHcCCChHHHhhcCCEEEEEcccccc
Confidence 47999999999999999999984332 11 234555554322 22221 11122221100
Q ss_pred -----------CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCcc-------C----------CCCCCCcEEEEeeCCccc
Q 043850 165 -----------LNDSTLERTDGLRKRLNKEMRVLIILDNIWTKL-------E----------KDDQERCTIVLISRSRDL 216 (309)
Q Consensus 165 -----------~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~-------~----------~~~~~gs~iliTtR~~~v 216 (309)
...+..+....+...+...++-++|||...... . .....|..||++|.....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 105 GLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred ccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 012334455555555544346789999874321 1 122357789999988654
No 106
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.07 E-value=0.00032 Score=61.83 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=37.1
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 80 KDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.....++|.+.....+...+......-+.|+|.+|+|||+||+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34567899988666654444333334599999999999999999998764
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.06 E-value=0.0023 Score=56.71 Aligned_cols=93 Identities=19% Similarity=0.232 Sum_probs=55.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCC----CeEEEEEecCCCCHHHHHHHHHHHhCCCCC---------CCCC-
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLF----DKVVMAEVTQTPDYRKIEDQFAFDLGMKLD---------LNDS- 168 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~- 168 (309)
.-.++.|+|.+|+|||||+..++......... ..++|++....+....+ ..+++.++.... ...+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 44799999999999999999998875311011 24588887665443332 334444433211 0011
Q ss_pred --HHHHHHHHHHHHhc-----CCeEEEEEeCCCCc
Q 043850 169 --TLERTDGLRKRLNK-----EMRVLIILDNIWTK 196 (309)
Q Consensus 169 --~~~~~~~l~~~L~~-----~~r~LlVlDdv~~~ 196 (309)
..+....+...+.. .+.-+||+|.+-..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 12334445555543 34789999998654
No 108
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.03 E-value=0.0045 Score=56.27 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=25.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
...+|.++|.+|+||||++..++.....+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999999877653
No 109
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.03 E-value=0.0013 Score=57.62 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 83 EIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..++|+++.++.+...+... ..+.++|++|+|||+||+.+++...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 46789999999988887654 4688999999999999999988664
No 110
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.00 E-value=0.0025 Score=59.94 Aligned_cols=48 Identities=27% Similarity=0.331 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHHHhh------cCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 83 EIFDSRKEIFQVVMESLK------DDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..++|-++..+.+.+.+. .-....+.|+|++|+||||||+.++.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346787777766655431 124568999999999999999999988743
No 111
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.97 E-value=0.0005 Score=54.36 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999988654
No 112
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.97 E-value=0.011 Score=53.93 Aligned_cols=29 Identities=31% Similarity=0.364 Sum_probs=25.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.+++|.++|.+|+||||++..++.....+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999999877654
No 113
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.97 E-value=0.0011 Score=54.58 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 88 RKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 88 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.++..+.+...+.......|+|+|.+|+|||||+..+......
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3444555555555566789999999999999999999887543
No 114
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.93 E-value=0.00057 Score=53.57 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+|+|.|++|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987754
No 115
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.93 E-value=0.007 Score=52.05 Aligned_cols=39 Identities=33% Similarity=0.342 Sum_probs=30.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCC-eEEEEEec
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFD-KVVMAEVT 143 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~ 143 (309)
.-.+++|.|.+|+|||||++.++...... .. .++|++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e 73 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLE 73 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCc
Confidence 34699999999999999999998887653 22 46666643
No 116
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.85 E-value=0.0045 Score=53.68 Aligned_cols=102 Identities=21% Similarity=0.250 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHhhc--------CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCH--HHHHHHHHH
Q 043850 88 RKEIFQVVMESLKD--------DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDY--RKIEDQFAF 157 (309)
Q Consensus 88 R~~~~~~l~~~L~~--------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~ 157 (309)
+....++|.+.+.. ....+|.|+|.+|+||||++..++...... -..+.++... .+.. .+-+...++
T Consensus 80 ~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D-~~r~~a~eqL~~~~~ 156 (306)
T 1vma_A 80 LESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAAD-TFRAAAIEQLKIWGE 156 (306)
T ss_dssp HHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccc-cccHHHHHHHHHHHH
Confidence 34455556665532 235799999999999999999999887653 2245555543 2222 222344555
Q ss_pred HhCCCCCC---CCCHHHH-HHHHHHHHhcCCeEEEEEeCC
Q 043850 158 DLGMKLDL---NDSTLER-TDGLRKRLNKEMRVLIILDNI 193 (309)
Q Consensus 158 ~l~~~~~~---~~~~~~~-~~~l~~~L~~~~r~LlVlDdv 193 (309)
.++.+.-. ..+.... ...+...+..+ .-++|+|-.
T Consensus 157 ~~gl~~~~~~s~~~~~~v~~~al~~a~~~~-~dvvIiDtp 195 (306)
T 1vma_A 157 RVGATVISHSEGADPAAVAFDAVAHALARN-KDVVIIDTA 195 (306)
T ss_dssp HHTCEEECCSTTCCHHHHHHHHHHHHHHTT-CSEEEEEEC
T ss_pred HcCCcEEecCCccCHHHHHHHHHHHHHhcC-CCEEEEECC
Confidence 55543211 1233322 23344445444 457888865
No 117
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.85 E-value=0.00083 Score=58.33 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=37.4
Q ss_pred cccchHHHHHHHHHHhhc--CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 84 IFDSRKEIFQVVMESLKD--DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 578998888888887743 3446788999999999999999988653
No 118
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.85 E-value=0.00079 Score=54.48 Aligned_cols=27 Identities=41% Similarity=0.361 Sum_probs=23.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+|.|+|++|+||||+++.++....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998764
No 119
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.85 E-value=0.00069 Score=53.53 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~ 126 (309)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 120
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.84 E-value=0.0015 Score=59.84 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=53.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCC------CCCCCCHHH------
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGMK------LDLNDSTLE------ 171 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~------ 171 (309)
..++|+|.+|+|||||++.+....... +-+.++++.+++.. ...+++.++...-... ....+.+..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 468999999999999999998876654 22445667777654 3445555554320000 000111111
Q ss_pred HHHHHHHHHh--cCCeEEEEEeCCCC
Q 043850 172 RTDGLRKRLN--KEMRVLIILDNIWT 195 (309)
Q Consensus 172 ~~~~l~~~L~--~~~r~LlVlDdv~~ 195 (309)
..-.+.+++. .++.+||++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1123445553 35689999999944
No 121
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.83 E-value=0.00061 Score=53.39 Aligned_cols=20 Identities=45% Similarity=0.650 Sum_probs=18.8
Q ss_pred cEEEEEeCCCCcHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQV 124 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v 124 (309)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 122
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.83 E-value=0.012 Score=50.86 Aligned_cols=88 Identities=20% Similarity=0.161 Sum_probs=51.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC-CCHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT-PDYRKIEDQFAFDLGMKLD---LNDSTLERTDGLRKR 179 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 179 (309)
..+++++|.+|+||||++..++...... -..+.+++.... +...+.+.......+.+.- ...++.+......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999887643 234566655432 2233334445555554321 123455554444455
Q ss_pred HhcCCeEEEEEeCC
Q 043850 180 LNKEMRVLIILDNI 193 (309)
Q Consensus 180 L~~~~r~LlVlDdv 193 (309)
+....-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 54221236777764
No 123
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.81 E-value=0.00086 Score=53.38 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=23.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+.|.|+|++|+||||+|+.++....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999988764
No 124
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.80 E-value=0.001 Score=53.90 Aligned_cols=29 Identities=38% Similarity=0.432 Sum_probs=25.6
Q ss_pred cCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 101 DDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 101 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.....+|+|+|++|+|||||++.++....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999998876
No 125
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.79 E-value=0.00094 Score=54.07 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=23.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
....+|+|+|+.|+|||||++.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 445799999999999999999998765
No 126
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.0013 Score=53.85 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 87 SRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 87 gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+.++..+.+...+......+|+|+|.+|+|||||+..+.....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4445555665555555778999999999999999999988754
No 127
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.78 E-value=0.00088 Score=53.59 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
...+++|+|++|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999764
No 128
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.78 E-value=0.00074 Score=62.71 Aligned_cols=45 Identities=9% Similarity=0.210 Sum_probs=37.9
Q ss_pred ccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 83 EIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..++|+++.++.+...+..+ .-|.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 46789999998888877554 4788999999999999999988664
No 129
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.77 E-value=0.0011 Score=53.08 Aligned_cols=26 Identities=35% Similarity=0.335 Sum_probs=23.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+|.|.|++|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999987653
No 130
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.76 E-value=0.0053 Score=56.37 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=34.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQF 155 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 155 (309)
-.++.|.|.+|+||||||.+++....... -..++|++... +...+...+
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHH
Confidence 36899999999999999999998776431 12577777543 334444443
No 131
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.76 E-value=0.00083 Score=54.40 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 132
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.76 E-value=0.00078 Score=52.95 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+|+|+|+.|+|||||++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987654
No 133
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.75 E-value=0.0019 Score=55.71 Aligned_cols=29 Identities=28% Similarity=0.181 Sum_probs=25.2
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
....+|+|+|..|+||||||+.+......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 35679999999999999999999887764
No 134
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.75 E-value=0.001 Score=53.13 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=23.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.+|.|.|++|+||||+|+.+......
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987764
No 135
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.74 E-value=0.0038 Score=65.54 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=62.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----NDSTLERTDGLR 177 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 177 (309)
.-+++.|.|.+|+||||||.+++...... =..++|++....++.. .++.++.+... +.+.++....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 34799999999999999999998876543 3478999988877653 25666665332 245566666665
Q ss_pred HHHhcCCeEEEEEeCCCCcc
Q 043850 178 KRLNKEMRVLIILDNIWTKL 197 (309)
Q Consensus 178 ~~L~~~~r~LlVlDdv~~~~ 197 (309)
......+.-+||+|.+....
T Consensus 455 ~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCC
T ss_pred HHHHhcCCCEEEECCHHHhh
Confidence 55544446799999986543
No 136
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.74 E-value=0.024 Score=49.58 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=25.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
...+++|+|+.|+||||+++.++......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46799999999999999999999877653
No 137
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.0011 Score=52.82 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=25.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
...+|.|.|++|+||||+++.++......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999887643
No 138
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.73 E-value=0.0078 Score=51.90 Aligned_cols=88 Identities=16% Similarity=0.169 Sum_probs=50.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCC-HHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPD-YRKIEDQFAFDLGMKLD---LNDSTLERTDGLRK 178 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 178 (309)
...+++|+|.+|+||||++..++...... -..+.++....... ....+..+....+.+.- ...++.++......
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999999887653 23455555432221 11223344555554321 12344454433333
Q ss_pred HH-hcCCeEEEEEeCC
Q 043850 179 RL-NKEMRVLIILDNI 193 (309)
Q Consensus 179 ~L-~~~~r~LlVlDdv 193 (309)
.+ ..+ .=++|+|-.
T Consensus 175 ~~~~~~-~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEA-RDLILVDTA 189 (295)
T ss_dssp HHHHHT-CCEEEEECC
T ss_pred HHHhCC-CCEEEEeCC
Confidence 33 233 457888876
No 139
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.73 E-value=0.00099 Score=53.02 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999988653
No 140
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.72 E-value=0.005 Score=65.54 Aligned_cols=87 Identities=20% Similarity=0.235 Sum_probs=62.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----NDSTLERTDGLR 177 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 177 (309)
.-.++.|.|.+|+||||||.+++...... =..++|++....++.. .++.++.+... +.+.++....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 34799999999999999999998877643 2468899888777653 25667765432 345666666666
Q ss_pred HHHhcCCeEEEEEeCCCCc
Q 043850 178 KRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 178 ~~L~~~~r~LlVlDdv~~~ 196 (309)
........-+||+|.+...
T Consensus 455 ~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHHhcCCcEEEECCHHHh
Confidence 5554444679999998543
No 141
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.71 E-value=0.0018 Score=57.65 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=36.9
Q ss_pred cccchHHHHHHHHHHhh-------------c--CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 84 IFDSRKEIFQVVMESLK-------------D--DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~-------------~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.++|.+..++.+...+. . .....+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899988888887772 1 1346789999999999999999998763
No 142
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.70 E-value=0.013 Score=53.59 Aligned_cols=51 Identities=10% Similarity=-0.024 Sum_probs=36.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAF 157 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 157 (309)
-.++.|.|.+|+|||+||.+++....... =..++|++.. .+..++...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHH
Confidence 36899999999999999999988765431 1357777764 344555555543
No 143
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.69 E-value=0.014 Score=53.38 Aligned_cols=100 Identities=22% Similarity=0.239 Sum_probs=62.6
Q ss_pred HHHHhhc-CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHHHHHhCCC------CC--
Q 043850 95 VMESLKD-DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQFAFDLGMK------LD-- 164 (309)
Q Consensus 95 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~-- 164 (309)
.++.|.. ..-.-++|.|.+|+|||+|+..+++..... +-+.++++-+++.. ...+++.++...=... ..
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 3444432 234688999999999999999999875432 34667888888765 4567777776653222 00
Q ss_pred ---C-CCCHH------HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 043850 165 ---L-NDSTL------ERTDGLRKRLNK--EMRVLIILDNIWT 195 (309)
Q Consensus 165 ---~-~~~~~------~~~~~l~~~L~~--~~r~LlVlDdv~~ 195 (309)
. +.... ...-.+-+++.. ++.+||++||+..
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 0 11211 123334455543 5689999999844
No 144
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.68 E-value=0.0011 Score=52.57 Aligned_cols=26 Identities=50% Similarity=0.475 Sum_probs=22.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+.|.|.|++|+||||+++.++....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999987753
No 145
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.67 E-value=0.0012 Score=52.63 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=23.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.+|.|.|++|+||||+++.+......
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987653
No 146
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.67 E-value=0.0026 Score=56.71 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=31.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCC-eEEEEEecCCC
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFD-KVVMAEVTQTP 146 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~ 146 (309)
.-..++|+|.+|+|||||++.+++..... +-+ .++++-+++..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~-~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYN-HPDCVLMVLLIDERP 216 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHH-CTTSEEEEEEESSCH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhc-CCCeeEEEEEecCCh
Confidence 34689999999999999999998876543 222 34467777654
No 147
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.63 E-value=0.0015 Score=52.36 Aligned_cols=27 Identities=33% Similarity=0.336 Sum_probs=23.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+|+|.|++|+||||+|+.++....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999987653
No 148
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.62 E-value=0.009 Score=54.64 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=31.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT 145 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 145 (309)
-.++.|.|.+|+||||||.+++.....+ =..++|++....
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms 236 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG 236 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC
Confidence 4689999999999999999998887654 236778776543
No 149
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.62 E-value=0.0032 Score=55.54 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=33.0
Q ss_pred cchHHHHHHHHHHhh----cCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 86 DSRKEIFQVVMESLK----DDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 86 ~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
++-+...+.+++.+. .+....|.|+|++|+||||+++.++.....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344555566666552 345567999999999999999999887654
No 150
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.61 E-value=0.0012 Score=52.14 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..|.|.|++|+||||+|+.++....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988764
No 151
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.61 E-value=0.0014 Score=52.35 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=22.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+|+|.|++|+||||+|+.++....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 152
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.61 E-value=0.0012 Score=53.57 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=23.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+|+|+|++|+|||||++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 347899999999999999999988653
No 153
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.60 E-value=0.0025 Score=56.94 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=35.5
Q ss_pred cccchHHHHHHHHHHhh------------------------------cCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 84 IFDSRKEIFQVVMESLK------------------------------DDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~------------------------------~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.++|.++.++.|...+. ......+.++|++|+|||++|+.+++...
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 46888888877776651 11245689999999999999999998763
No 154
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.60 E-value=0.0014 Score=51.26 Aligned_cols=26 Identities=19% Similarity=0.493 Sum_probs=22.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+|+|.|+.|+||||+|+.++....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999988764
No 155
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.60 E-value=0.0013 Score=55.42 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+|.|.|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988654
No 156
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.60 E-value=0.013 Score=57.40 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=57.0
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHH
Q 043850 83 EIFDSRKEIFQVVMESLKD-------------DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYR 149 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 149 (309)
..+.|-++..++|.+.+.- ..++-|.++|++|+|||.||+.+++..... ++.++ ..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~----~~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIK----GP 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECC----HH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEec----cc
Confidence 4566777777777665421 134568899999999999999999876543 23332 11
Q ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCc
Q 043850 150 KIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTK 196 (309)
Q Consensus 150 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~ 196 (309)
+ ++.. .-. .+ +.....+.+.-+...+++|+||+++..
T Consensus 546 ~----l~s~----~vG-es-e~~vr~lF~~Ar~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 546 E----LLTM----WFG-ES-EANVREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp H----HHTT----TCS-SC-HHHHHHHHHHHHTTCSEEEECSCGGGC
T ss_pred h----hhcc----ccc-hH-HHHHHHHHHHHHHcCCceeechhhhHH
Confidence 1 1111 110 22 334444555544445899999999764
No 157
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.59 E-value=0.0035 Score=52.40 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHhh--cCCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 87 SRKEIFQVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 87 gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+....+.++..... ...+..|+|.|++|+||||+|+.+....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444455544432 2356789999999999999999998765
No 158
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.59 E-value=0.0015 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 159
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.57 E-value=0.0084 Score=55.02 Aligned_cols=92 Identities=20% Similarity=0.220 Sum_probs=61.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCC-HHHHHHHHHHHhCCC-------CC------CCCCH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPD-YRKIEDQFAFDLGMK-------LD------LNDST 169 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~-------~~------~~~~~ 169 (309)
-.-++|.|.+|+|||+|+..+++..... +-+.++++-+++... ..+++.++...=... .. .+...
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~ 243 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 243 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCH
Confidence 4678999999999999999999875432 357788888888764 566777776542221 00 01111
Q ss_pred ------HHHHHHHHHHHhc--CCeEEEEEeCCCCc
Q 043850 170 ------LERTDGLRKRLNK--EMRVLIILDNIWTK 196 (309)
Q Consensus 170 ------~~~~~~l~~~L~~--~~r~LlVlDdv~~~ 196 (309)
....-.+.++++. ++.+||++||+...
T Consensus 244 ~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 244 GARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp HHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 2233445566754 56899999998443
No 160
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.57 E-value=0.0015 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.|+|.|+.|+||||+++.++....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 161
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.57 E-value=0.017 Score=53.67 Aligned_cols=50 Identities=22% Similarity=0.200 Sum_probs=35.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFA 156 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 156 (309)
-.++.|.|.+|+|||+||.+++.....+ +=..++|++... +..++...++
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~ 291 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLI 291 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHH
Confidence 3689999999999999999998876543 113577877654 3455555443
No 162
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.57 E-value=0.0051 Score=51.13 Aligned_cols=107 Identities=17% Similarity=0.112 Sum_probs=61.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCC---------------------
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMK--------------------- 162 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--------------------- 162 (309)
-.++.|.|.+|+|||+||.+++.....+ .-..+++++... +...+...+.. ++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~ 105 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE--RARDLRREMAS-FGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS--CHHHHHHHHHT-TTCCHHHHHHTTSEEEEC-------
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccC--CHHHHHHHHHH-cCCChHHHHhcCcchhhhhHHHHhh
Confidence 4689999999999999999987553222 123566666543 34444443321 1100
Q ss_pred --------CCCCCCHHHHHHHHHHHHhcCCeEEEEEeCCCCccC-----------------CCCCCCcEEEEeeCCc
Q 043850 163 --------LDLNDSTLERTDGLRKRLNKEMRVLIILDNIWTKLE-----------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 163 --------~~~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-----------------~~~~~gs~iliTtR~~ 214 (309)
.............+.......+.-++|+|++..... .....++.+++|+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred cccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 001123445566666666554466889998743211 2334567778777654
No 163
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.56 E-value=0.0018 Score=51.66 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
....|+|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999876
No 164
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.56 E-value=0.0017 Score=52.16 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+|+|.|++|+||||+|+.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988654
No 165
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.56 E-value=0.0016 Score=53.07 Aligned_cols=27 Identities=30% Similarity=0.268 Sum_probs=23.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+|+|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987654
No 166
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.55 E-value=0.0013 Score=52.31 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988654
No 167
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.55 E-value=0.0017 Score=52.53 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 168
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.54 E-value=0.0019 Score=52.51 Aligned_cols=27 Identities=41% Similarity=0.434 Sum_probs=23.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+|+|+|..|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988755
No 169
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.53 E-value=0.0018 Score=52.19 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.1
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
....+|+|.|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999875
No 170
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.53 E-value=0.04 Score=51.02 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=23.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.+.+|+|+|.+|+||||++..++.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999877654
No 171
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.53 E-value=0.0013 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998765
No 172
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.52 E-value=0.0019 Score=52.23 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=23.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...+|+|.|+.|+||||+|+.++...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998754
No 173
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.52 E-value=0.0029 Score=54.41 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998754
No 174
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.51 E-value=0.0018 Score=52.32 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=22.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..+|+|+|+.|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 175
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.51 E-value=0.0019 Score=52.35 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.+|+|.|++|+||||+|+.+.......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 589999999999999999999877643
No 176
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.50 E-value=0.0018 Score=53.27 Aligned_cols=24 Identities=42% Similarity=0.541 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.+|+|+|+.|+||||+++.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 177
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.49 E-value=0.0016 Score=51.98 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~ 126 (309)
.+++|+|+.|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 178
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.49 E-value=0.0069 Score=60.35 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVA 125 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~ 125 (309)
...+++|+|+.|.||||+.+.++
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35799999999999999999983
No 179
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.49 E-value=0.0018 Score=54.45 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=23.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+.+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567899999999999999999988654
No 180
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.48 E-value=0.047 Score=49.46 Aligned_cols=29 Identities=24% Similarity=0.293 Sum_probs=25.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
...++.|+|.+|+||||++..++......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999887654
No 181
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.47 E-value=0.0019 Score=51.33 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..|+|.|++|+||||+++.++....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999987653
No 182
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.47 E-value=0.0021 Score=51.25 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=22.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 183
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.46 E-value=0.0017 Score=50.99 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988654
No 184
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.46 E-value=0.0021 Score=53.86 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=23.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+|+|+|+.|+|||||++.++....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999999997653
No 185
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.45 E-value=0.0022 Score=50.46 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=24.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
..+++.|.|..|+|||||+..+......+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999887643
No 186
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.45 E-value=0.0022 Score=51.02 Aligned_cols=25 Identities=44% Similarity=0.565 Sum_probs=22.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.++|+|+.|+|||||++.++.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999988753
No 187
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.44 E-value=0.0024 Score=51.60 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=23.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
....|.|.|++|+||||+|+.+.....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999988653
No 188
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.44 E-value=0.0022 Score=52.67 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
....|.|.|++|+||||+|+.++....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346799999999999999999988654
No 189
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.44 E-value=0.0023 Score=52.64 Aligned_cols=28 Identities=39% Similarity=0.392 Sum_probs=24.6
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...++|.|.|++|+||+|.|+.++..+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3568999999999999999999998764
No 190
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.43 E-value=0.0081 Score=63.14 Aligned_cols=85 Identities=20% Similarity=0.226 Sum_probs=66.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCC-----CCCHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDL-----NDSTLERTDGLRK 178 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 178 (309)
-++|-|+|+.|+||||||.++....... =...+|++.....+..- ++.+|.+.+. +...++....+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 4899999999999999999998765543 46788998887777653 7888887654 4566777777777
Q ss_pred HHhcCCeEEEEEeCCCC
Q 043850 179 RLNKEMRVLIILDNIWT 195 (309)
Q Consensus 179 ~L~~~~r~LlVlDdv~~ 195 (309)
.++....-+||+|-|..
T Consensus 1504 ~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHTCCSEEEESCSTT
T ss_pred HHHcCCCCEEEEccHHh
Confidence 77776677999999844
No 191
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.43 E-value=0.0021 Score=54.44 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 192
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.42 E-value=0.0025 Score=51.76 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=26.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCe
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDK 136 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 136 (309)
..+|+|.|+.|+||||+++.+....... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999876543 3554
No 193
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.42 E-value=0.0019 Score=52.19 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~ 126 (309)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 194
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.42 E-value=0.0014 Score=52.00 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=18.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+|.|.|++|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987654
No 195
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.42 E-value=0.0026 Score=51.69 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=26.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCe
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDK 136 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 136 (309)
...+|+|.|+.|+||||+++.+....... +++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 34689999999999999999999887643 3444
No 196
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.41 E-value=0.0065 Score=49.10 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=33.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHH
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFD 158 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 158 (309)
.|+|-|.-|+||||.++.+++...... . .+++..-.......+.++.++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~-~v~~treP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-K-KVILKREPGGTETGEKIRKILLE 52 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEESSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-cEEEEECCCCCcHHHHHHHHhhc
Confidence 478889999999999999999887652 2 33444333333344555555443
No 197
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.39 E-value=0.0019 Score=52.23 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+.++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 36799999999999999999987653
No 198
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.39 E-value=0.0019 Score=51.77 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+.|.|+|++|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4688999999999999999987643
No 199
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.37 E-value=0.0024 Score=52.44 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=23.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
....|.|.|++|+||||+++.++....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999988764
No 200
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.36 E-value=0.0024 Score=49.80 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988654
No 201
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.36 E-value=0.0075 Score=48.17 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.|+|.|+.|+||||+++.+......
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987754
No 202
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.36 E-value=0.0042 Score=54.21 Aligned_cols=27 Identities=26% Similarity=0.323 Sum_probs=23.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+.+|+|.|..|+|||||++.+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999987765
No 203
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.35 E-value=0.0025 Score=50.88 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=22.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+|+|.|+.|+||||+++.+.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 204
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.32 E-value=0.0026 Score=51.59 Aligned_cols=25 Identities=40% Similarity=0.582 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
...+|+|+|.+|+|||||++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999864
No 205
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.32 E-value=0.0023 Score=55.81 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=31.7
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
++.++|+|.|-||+||||.+..++...... =..+.-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~--GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 467999999999999999999998877654 22466676653
No 206
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.32 E-value=0.0025 Score=52.63 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...|.|.|++|+||||+|+.++...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998764
No 207
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.31 E-value=0.0019 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQV 124 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v 124 (309)
...+++|+|+.|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999963
No 208
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.30 E-value=0.0029 Score=51.16 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987654
No 209
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.27 E-value=0.0024 Score=51.75 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~ 126 (309)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 210
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.25 E-value=0.0029 Score=51.60 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.|+|.|++|+||||+|+.++....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 211
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.25 E-value=0.0039 Score=52.49 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=23.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+|.|.|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999987653
No 212
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.24 E-value=0.0016 Score=52.96 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
+|+|.|+.|+||||+++.+......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987753
No 213
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.23 E-value=0.0028 Score=51.52 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
-.+++|+|+.|+|||||++.+.....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46999999999999999999987653
No 214
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.20 E-value=0.0033 Score=59.90 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=40.3
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 80 KDYEIFDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 80 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.....++|.+..++.+...+... ..+.|+|++|+||||||+.++.....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 34467899999888888777654 58899999999999999999987643
No 215
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.19 E-value=0.0039 Score=54.07 Aligned_cols=28 Identities=36% Similarity=0.471 Sum_probs=24.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
+..+++|+|++|+|||||++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999987764
No 216
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.19 E-value=0.0033 Score=50.67 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...+|+|.|+.|+||||+++.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998753
No 217
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.19 E-value=0.0037 Score=54.42 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=29.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEe
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEV 142 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 142 (309)
....+|+|.|..|+|||||++.+.........-..+.++..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~q 128 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTT 128 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEec
Confidence 44579999999999999999999887754211123455544
No 218
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.18 E-value=0.0035 Score=52.43 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.6
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
....+|+|.|..|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998865
No 219
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.17 E-value=0.0036 Score=52.65 Aligned_cols=27 Identities=41% Similarity=0.426 Sum_probs=23.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+|+|.|+.|+||||+++.++....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346999999999999999999986654
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.16 E-value=0.005 Score=50.17 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.6
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
....+|.|.|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4457899999999999999999988765
No 221
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.15 E-value=0.0028 Score=52.14 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=22.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998765
No 222
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.14 E-value=0.0037 Score=50.41 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=22.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 223
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.12 E-value=0.0033 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.|+|.|++|+||||+|+.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
No 224
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.11 E-value=0.0048 Score=56.21 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=36.9
Q ss_pred ccccchHHHHHHHHHHhhc--------------CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 83 EIFDSRKEIFQVVMESLKD--------------DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..++|-++..+.|...+.. ...+-|.++|++|+|||++|+.++.....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3578888887777666521 13466999999999999999999987653
No 225
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.10 E-value=0.0032 Score=49.70 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=27.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEE
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAE 141 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~ 141 (309)
.+++|+|..|+|||||++.+.........-.+.+.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 5899999999999999999998876542223444443
No 226
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.10 E-value=0.0038 Score=48.62 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=23.9
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..-.+++|+|+.|+|||||++.++...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345799999999999999999999876
No 227
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.07 E-value=0.009 Score=48.43 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhhcC-CCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 88 RKEIFQVVMESLKDD-KLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 88 R~~~~~~l~~~L~~~-~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
-..-+..|..++..- ....+.|+|++|+|||++|..+++....
T Consensus 41 ~~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 41 FITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 334455666665431 2347999999999999999999987653
No 228
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.06 E-value=0.0048 Score=48.77 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..+|+|.|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468899999999999999999887643
No 229
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.05 E-value=0.01 Score=52.59 Aligned_cols=39 Identities=28% Similarity=0.518 Sum_probs=29.9
Q ss_pred HHHHHHHhh--cCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 92 FQVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 92 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
...+++.+. ..+..+|+|+|.+|+|||||+..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 445555553 346789999999999999999999877643
No 230
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.03 E-value=0.016 Score=53.28 Aligned_cols=43 Identities=30% Similarity=0.557 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 88 RKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 88 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
-.+.+..+...+.+.+ +.+.|.|.+|+|||+++..++......
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 4445556666665443 489999999999999999999887654
No 231
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.03 E-value=0.004 Score=51.24 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-.+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 347999999999999999999988754
No 232
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.02 E-value=0.0047 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~ 126 (309)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 233
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.01 E-value=0.0045 Score=50.73 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..|.|.|++|+||||+|+.++....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999988763
No 234
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.99 E-value=0.0042 Score=49.90 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+++|+|..|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999988765
No 235
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.97 E-value=0.0048 Score=52.84 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=21.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~ 126 (309)
.+.+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 236
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.97 E-value=0.0051 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 237
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.96 E-value=0.0042 Score=52.25 Aligned_cols=26 Identities=35% Similarity=0.319 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...|+|+|+.|+||||+++.++....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36899999999999999999998664
No 238
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.95 E-value=0.0057 Score=48.39 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=23.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.++++|+|..|+|||||+..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999887653
No 239
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.95 E-value=0.0051 Score=49.68 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
++|+|.|+.|+||||+++.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999988654
No 240
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.95 E-value=0.0058 Score=50.62 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...|.|.|+.|+||||+|+.++....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999998764
No 241
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.94 E-value=0.019 Score=50.06 Aligned_cols=38 Identities=32% Similarity=0.374 Sum_probs=29.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEe
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEV 142 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 142 (309)
...+|+|+|.+|+||||++..++...... -..+.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 35689999999999999999999877643 234555544
No 242
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.93 E-value=0.0055 Score=53.03 Aligned_cols=27 Identities=33% Similarity=0.456 Sum_probs=24.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..+++|+|+.|+||||+++.++.....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999887654
No 243
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.93 E-value=0.012 Score=51.12 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=24.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
....+|+|+|..|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988654
No 244
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.93 E-value=0.0053 Score=50.03 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+|.|.|++|+||+|.|+.++....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998764
No 245
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.93 E-value=0.023 Score=45.64 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=60.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC---CCCHHHHHHHHH---HHhCCCC--CCCC------CH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ---TPDYRKIEDQFA---FDLGMKL--DLND------ST 169 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~---~~l~~~~--~~~~------~~ 169 (309)
...|.|++-.|.||||+|...+-+.-... + .+.++..-. ......++..+. ...+... ..+. ..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G-~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG-K-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT-C-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 45677777777999999999887766541 2 344443322 223334444331 0001111 1100 11
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCc-----cC--------CCCCCCcEEEEeeCCcc
Q 043850 170 LERTDGLRKRLNKEMRVLIILDNIWTK-----LE--------KDDQERCTIVLISRSRD 215 (309)
Q Consensus 170 ~~~~~~l~~~L~~~~r~LlVlDdv~~~-----~~--------~~~~~gs~iliTtR~~~ 215 (309)
......+++.+...+-=|||||++... .. ........||+|+|...
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 223444555665554459999998442 11 34455677999999983
No 246
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.93 E-value=0.0055 Score=50.90 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+|+|.|++|+||||+++.++....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987664
No 247
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.91 E-value=0.0053 Score=50.56 Aligned_cols=23 Identities=35% Similarity=0.340 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 248
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.91 E-value=0.014 Score=49.38 Aligned_cols=105 Identities=14% Similarity=0.163 Sum_probs=55.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC-CCHHHHHHHHHH--HhCCCCCCCCCHHHHHHHHHH
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT-PDYRKIEDQFAF--DLGMKLDLNDSTLERTDGLRK 178 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~ 178 (309)
..-.+++|+|+.|+|||||++.+....... +.+.+++.-..- .-.... ..+.. .++. +.......+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl------~~~~l~~~la~ 93 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGE------DTKSFADALRA 93 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTT------TBSCHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCC------CHHHHHHHHHH
Confidence 445799999999999999999998876543 233333321110 000000 00000 0010 11123445666
Q ss_pred HHhcCCeEEEEEeCCCCccC-----CCCCCCcEEEEeeCCccc
Q 043850 179 RLNKEMRVLIILDNIWTKLE-----KDDQERCTIVLISRSRDL 216 (309)
Q Consensus 179 ~L~~~~r~LlVlDdv~~~~~-----~~~~~gs~iliTtR~~~v 216 (309)
.|..+ +=+|++|+..+... .....|..|++||.....
T Consensus 94 aL~~~-p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 94 ALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHC-CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSH
T ss_pred HHhhC-CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchH
Confidence 66554 56788888863322 111346668888877653
No 249
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.90 E-value=0.011 Score=50.97 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=31.5
Q ss_pred cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 043850 101 DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 101 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
....++|+|+|-||+||||+|..++...... =..++-+++..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 3467899999999999999999998887654 22566666654
No 250
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.86 E-value=0.02 Score=47.64 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=28.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEE
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMA 140 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv 140 (309)
...|.|.|+.|+||||+++.+....... ++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeee
Confidence 4689999999999999999999988754 45534444
No 251
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.82 E-value=0.0033 Score=52.01 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=16.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHH-HHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVA-MKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~-~~~ 128 (309)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 252
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.82 E-value=0.0057 Score=51.11 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.0
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.. .+++|+|+.|+|||||.+.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999999998654
No 253
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.81 E-value=0.011 Score=54.95 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHHHhh--cCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 84 IFDSRKEIFQVVMESLK--DDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
....|.+..+.|.+... .....+|.+.|++|+||||+|+.++.....
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34466666667666652 234578999999999999999999998864
No 254
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.81 E-value=0.0056 Score=53.73 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=22.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+|+|.|+.|+||||||..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988654
No 255
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.78 E-value=0.015 Score=48.03 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
....|+|.|+.|+||||+++.+......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999988765
No 256
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.74 E-value=0.023 Score=46.40 Aligned_cols=52 Identities=19% Similarity=0.184 Sum_probs=34.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAF 157 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 157 (309)
..|.+.|..|+||||+++.+....... .+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999888765 3433333332222234455555554
No 257
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.72 E-value=0.0063 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 258
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.71 E-value=0.015 Score=53.51 Aligned_cols=28 Identities=36% Similarity=0.440 Sum_probs=24.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
...+++|+|..|+|||||++.++.....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 3579999999999999999999987764
No 259
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.71 E-value=0.0052 Score=50.75 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=21.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987643
No 260
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.71 E-value=0.005 Score=51.25 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999987644
No 261
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.70 E-value=0.0078 Score=53.36 Aligned_cols=27 Identities=33% Similarity=0.456 Sum_probs=24.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..+++|+|+.|+|||||++.++.....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 469999999999999999999987754
No 262
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.70 E-value=0.0067 Score=52.86 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.+|.|+|+.|+||||||+.++....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999987653
No 263
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.66 E-value=0.02 Score=50.55 Aligned_cols=31 Identities=48% Similarity=0.602 Sum_probs=26.1
Q ss_pred hhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 99 LKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 99 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+.....+++.+.|-||+||||+|..++....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3455678999999999999999999987766
No 264
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.66 E-value=0.019 Score=47.22 Aligned_cols=56 Identities=21% Similarity=0.162 Sum_probs=36.0
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHH
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAF 157 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 157 (309)
.....|.|.|+.|+||||+++.+.+.......+.......-.......+.+++++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 45678999999999999999999988776123444432222222233445555554
No 265
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.65 E-value=0.0041 Score=53.55 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+..+|+|.|..|+||||+|+.+.....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 266
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.63 E-value=0.0073 Score=52.32 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=22.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.++|+|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998754
No 267
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.63 E-value=0.01 Score=54.00 Aligned_cols=91 Identities=21% Similarity=0.200 Sum_probs=55.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhccc-CCC-eEEEEEecCCC-CHHHHHHHHHHHhCCC------CCCCCCHHH----
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDK-LFD-KVVMAEVTQTP-DYRKIEDQFAFDLGMK------LDLNDSTLE---- 171 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~---- 171 (309)
.-++|.|.+|+|||+|+.+++++..... +-+ .++++-+++.. ...+++.++...=... ...+.....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 4578999999999999999998765421 112 66777777664 4566666655431110 000122211
Q ss_pred --HHHHHHHHHhc--CCeEEEEEeCCCC
Q 043850 172 --RTDGLRKRLNK--EMRVLIILDNIWT 195 (309)
Q Consensus 172 --~~~~l~~~L~~--~~r~LlVlDdv~~ 195 (309)
..-.+.+++.. ++.+||++||+..
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 22345666652 5689999999854
No 268
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.62 E-value=0.0051 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.+++|+|+.|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999876
No 269
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.59 E-value=0.0081 Score=47.96 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998764
No 270
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.59 E-value=0.0059 Score=53.46 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..++|.|+|+.|+||||||..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998754
No 271
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.59 E-value=0.022 Score=49.99 Aligned_cols=44 Identities=32% Similarity=0.382 Sum_probs=31.7
Q ss_pred hhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 043850 99 LKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 99 L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
+.....+++.+.|-||+||||+|..++...... =..++-++...
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~ 54 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDP 54 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCS
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCC
Confidence 344557888999999999999999998877543 22455555443
No 272
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.59 E-value=0.0083 Score=51.86 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=23.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..++|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 273
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.55 E-value=0.0097 Score=49.94 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...++.+.|.||+|||||+..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357888999999999999999987766
No 274
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.54 E-value=0.009 Score=48.19 Aligned_cols=41 Identities=20% Similarity=0.054 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 88 RKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 88 R~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
++...+.+.+.......--|+|+|.+|+|||||...+.+..
T Consensus 14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33334444344334455678999999999999999988653
No 275
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.54 E-value=0.006 Score=55.32 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=23.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
....+|.|+|++|+||||+|+.++...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356899999999999999999987654
No 276
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.54 E-value=0.015 Score=54.68 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=32.5
Q ss_pred ccchHHHHHHHHHHh--hcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 85 FDSRKEIFQVVMESL--KDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 85 ~~gR~~~~~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.+.+.+..+.+.... .-....+|+|+|+.|+|||||++.++.....
T Consensus 348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 344555455554443 1124478999999999999999999988764
No 277
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.52 E-value=0.0066 Score=50.61 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-.+++|+|+.|+|||||++.++.-..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999987654
No 278
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.51 E-value=0.0081 Score=51.22 Aligned_cols=108 Identities=24% Similarity=0.298 Sum_probs=59.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhccc-C-------CCeEEEEEecCCCCHHHHHHH---------------HHHHhC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDK-L-------FDKVVMAEVTQTPDYRKIEDQ---------------FAFDLG 160 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~-------f~~~~wv~~~~~~~~~~~~~~---------------i~~~l~ 160 (309)
-.++.|+|.+|+|||||+..++....... . -..+++++..+.. ..+... ++..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~~~~~l~ 107 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQAVADGLL 107 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHHHHHHEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhhccCceE
Confidence 47999999999999999999987554210 0 1346677765543 222111 123332
Q ss_pred CCCC-----CCCCHHHHHHHHHHHHhcCCeEEEEEeCCCC--ccC----------------CCCCCCcEEEEeeCCccc
Q 043850 161 MKLD-----LNDSTLERTDGLRKRLNKEMRVLIILDNIWT--KLE----------------KDDQERCTIVLISRSRDL 216 (309)
Q Consensus 161 ~~~~-----~~~~~~~~~~~l~~~L~~~~r~LlVlDdv~~--~~~----------------~~~~~gs~iliTtR~~~v 216 (309)
.... ...+. ...+.+...+.+ .-+||||.+.. ..+ .....|+.||+++.....
T Consensus 108 l~~~~~~~~~~ls~-g~~~~i~~l~~~--~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 108 IQPLIGSLPNIMAP-EWFDGLKRAAEG--RRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG 183 (279)
T ss_dssp ECCCTTSCCCTTSH-HHHHHHHHHHTT--CSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred EeecCCCCcccCCH-HHHHHHHHhcCC--CCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 2111 01222 234455544443 56999999866 211 112347778888887653
No 279
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.51 E-value=0.0079 Score=50.54 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=21.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
-.+++|+|+.|+|||||.+.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 280
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.50 E-value=0.0064 Score=51.86 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34789999999999999999987643
No 281
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.50 E-value=0.0065 Score=51.46 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44789999999999999999987654
No 282
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.45 E-value=0.012 Score=48.79 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=23.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999987553
No 283
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.44 E-value=0.033 Score=45.52 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=26.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCe
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDK 136 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~ 136 (309)
...|.|.|+.|+||||+++.+....... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 3578999999999999999999888754 3554
No 284
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.44 E-value=0.0084 Score=50.92 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.-.+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4479999999999999999999875
No 285
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.44 E-value=0.007 Score=51.39 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34789999999999999999997644
No 286
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.44 E-value=0.0071 Score=50.47 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999997654
No 287
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.43 E-value=0.0071 Score=51.05 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999987643
No 288
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.39 E-value=0.0065 Score=49.79 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=61.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcc---cCCC---------eEEEEEecC----CCCHH----------------HH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMED---KLFD---------KVVMAEVTQ----TPDYR----------------KI 151 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~---------~~~wv~~~~----~~~~~----------------~~ 151 (309)
-.+++|+|+.|+|||||.+.++.-.... -.|+ .+.++.-.. ..++. +-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~ 114 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE 114 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHH
Confidence 4689999999999999999997654321 0011 122332110 01211 22
Q ss_pred HHHHHHHhCCCCC-C---CCCHHH-HHHHHHHHHhcCCeEEEEEeCCCCccC------------CCCCCCcEEEEeeCCc
Q 043850 152 EDQFAFDLGMKLD-L---NDSTLE-RTDGLRKRLNKEMRVLIILDNIWTKLE------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 152 ~~~i~~~l~~~~~-~---~~~~~~-~~~~l~~~L~~~~r~LlVlDdv~~~~~------------~~~~~gs~iliTtR~~ 214 (309)
..++++.++.... . ..+..+ ..-.+...|..+ +-+|+||+..+..+ .....|..||++|.+.
T Consensus 115 ~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~-p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~ 193 (214)
T 1sgw_A 115 IMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVN-AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE 193 (214)
T ss_dssp HHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSC-CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC
T ss_pred HHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhC-CCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3445566655431 1 122222 223344455554 68999999877666 1112356788888887
Q ss_pred ccc
Q 043850 215 DLL 217 (309)
Q Consensus 215 ~v~ 217 (309)
..+
T Consensus 194 ~~~ 196 (214)
T 1sgw_A 194 LSY 196 (214)
T ss_dssp CTT
T ss_pred HHH
Confidence 543
No 289
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.38 E-value=0.0077 Score=49.87 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-.+++|+|+.|+|||||.+.++....
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 346899999999999999999987654
No 290
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.38 E-value=0.0092 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
-.|+|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 291
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.38 E-value=0.0075 Score=51.09 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44799999999999999999987654
No 292
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.37 E-value=0.059 Score=54.32 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=19.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQV 124 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v 124 (309)
..+++|+|+.|.|||||.+.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 479999999999999999998
No 293
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.37 E-value=0.0077 Score=50.51 Aligned_cols=26 Identities=38% Similarity=0.532 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|..|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997654
No 294
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.36 E-value=0.011 Score=45.10 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+.|.|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998653
No 295
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.023 Score=44.98 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
....|+|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998653
No 296
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.35 E-value=0.012 Score=48.85 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...|+|.|..|+||||+++.++....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998763
No 297
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.34 E-value=0.045 Score=51.08 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=58.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCC---------------CCCCC
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMK---------------LDLND 167 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------------~~~~~ 167 (309)
.-.+++|.|.+|+|||||++.++...... =..++++...+. ...+...+ ..++.. .....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccC
Confidence 34789999999999999999998876543 113455544332 23333222 112211 00013
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEEeCC---CCc-----cC--------CCCCCCcEEEEeeCCc
Q 043850 168 STLERTDGLRKRLNKEMRVLIILDNI---WTK-----LE--------KDDQERCTIVLISRSR 214 (309)
Q Consensus 168 ~~~~~~~~l~~~L~~~~r~LlVlDdv---~~~-----~~--------~~~~~gs~iliTtR~~ 214 (309)
+..+.+..+.......++-+||+|-+ +.. .. .....|..||+||...
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 44455555554443334678999943 212 11 1123467788888765
No 298
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.34 E-value=0.008 Score=50.27 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44789999999999999999997654
No 299
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.31 E-value=0.0082 Score=50.65 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999997654
No 300
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.30 E-value=0.011 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999753
No 301
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.28 E-value=0.012 Score=50.84 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.7
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+.-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345799999999999999999998765
No 302
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.28 E-value=0.027 Score=50.25 Aligned_cols=27 Identities=26% Similarity=0.094 Sum_probs=23.6
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
....+++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455799999999999999999999754
No 303
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.27 E-value=0.0087 Score=50.61 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44699999999999999999997653
No 304
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.26 E-value=0.0087 Score=50.94 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|..|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44789999999999999999997654
No 305
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.25 E-value=0.012 Score=45.05 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998654
No 306
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.24 E-value=0.0089 Score=50.18 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999987654
No 307
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.23 E-value=0.025 Score=44.62 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 92 FQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 92 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
+..+.+ +.......|+|+|.+|+|||||...+...
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 33455677899999999999999999854
No 308
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.23 E-value=0.013 Score=49.88 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.++|+|..|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987653
No 309
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.22 E-value=0.0091 Score=50.65 Aligned_cols=125 Identities=22% Similarity=0.198 Sum_probs=67.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc---cCCC-----------eEEEEEecC-----CCCH---------------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED---KLFD-----------KVVMAEVTQ-----TPDY--------------- 148 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~-----------~~~wv~~~~-----~~~~--------------- 148 (309)
.-.+++|+|..|+|||||.+.++.-.... =.++ .+.++.-.. ..++
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~ 111 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR 111 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHH
Confidence 34689999999999999999987654311 0011 122321110 0011
Q ss_pred --HHHHHHHHHHhCCC--C--CC---CCCHHH-HHHHHHHHHhcCCeEEEEEeCCCCccC------------CCCCCCcE
Q 043850 149 --RKIEDQFAFDLGMK--L--DL---NDSTLE-RTDGLRKRLNKEMRVLIILDNIWTKLE------------KDDQERCT 206 (309)
Q Consensus 149 --~~~~~~i~~~l~~~--~--~~---~~~~~~-~~~~l~~~L~~~~r~LlVlDdv~~~~~------------~~~~~gs~ 206 (309)
.+...++++.++.. . .. ..+..+ ..-.+...|..+ +-+|+||+..+..+ .....|..
T Consensus 112 ~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~-p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~t 190 (266)
T 2yz2_A 112 DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHE-PDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 190 (266)
T ss_dssp CSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTC-CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcC-CCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCE
Confidence 12234455655554 1 11 122222 223344455554 68999999988777 11112667
Q ss_pred EEEeeCCccccccccCCCceEecC
Q 043850 207 IVLISRSRDLLCNDMNSQKDFWID 230 (309)
Q Consensus 207 iliTtR~~~v~~~~~~~~~~~~l~ 230 (309)
||++|.+...+.. -.++++.+.
T Consensus 191 ii~vtHd~~~~~~--~~d~v~~l~ 212 (266)
T 2yz2_A 191 VILISHDIETVIN--HVDRVVVLE 212 (266)
T ss_dssp EEEECSCCTTTGG--GCSEEEEEE
T ss_pred EEEEeCCHHHHHH--hCCEEEEEE
Confidence 9999988765331 234555554
No 310
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.21 E-value=0.014 Score=52.32 Aligned_cols=26 Identities=46% Similarity=0.516 Sum_probs=22.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+|+|.|+.|+||||||..++....
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 36899999999999999999997654
No 311
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.20 E-value=0.0087 Score=47.35 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 043850 106 VIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~ 126 (309)
-|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999876
No 312
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.19 E-value=0.025 Score=47.80 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcC-C-CcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 90 EIFQVVMESLKDD-K-LKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 90 ~~~~~l~~~L~~~-~-~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.....+..++... + ...+.++|++|+|||.+|..+++.
T Consensus 88 ~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 4455566676543 2 457999999999999999999985
No 313
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.18 E-value=0.0093 Score=50.97 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|+.|+|||||.+.++...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999997654
No 314
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.17 E-value=0.0094 Score=50.17 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=67.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhccc-C---CCeEEEEEecC----CCCH----------------------HHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDK-L---FDKVVMAEVTQ----TPDY----------------------RKIED 153 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~---f~~~~wv~~~~----~~~~----------------------~~~~~ 153 (309)
-.+++|+|+.|+|||||.+.++.-..... . ...+.|+.-.. ..++ .+...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~ 110 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHH
Confidence 46899999999999999999987543210 0 01122331100 0011 12234
Q ss_pred HHHHHhCCCCCC-----CCCHH-HHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcEEEEeeCCc
Q 043850 154 QFAFDLGMKLDL-----NDSTL-ERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQERCTIVLISRSR 214 (309)
Q Consensus 154 ~i~~~l~~~~~~-----~~~~~-~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~iliTtR~~ 214 (309)
++++.++..... ..+.. ...-.+...|..+ +-+|+||+..+..+ .....|..||++|.+.
T Consensus 111 ~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~-p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 189 (253)
T 2nq2_C 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASE-CKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189 (253)
T ss_dssp HHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTT-CSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH
T ss_pred HHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 556666543211 12222 2233344455554 67999999988777 1122366799999987
Q ss_pred cccccccCCCceEecC
Q 043850 215 DLLCNDMNSQKDFWID 230 (309)
Q Consensus 215 ~v~~~~~~~~~~~~l~ 230 (309)
..+.. -.++++.+.
T Consensus 190 ~~~~~--~~d~v~~l~ 203 (253)
T 2nq2_C 190 NQVVA--IANKTLLLN 203 (253)
T ss_dssp HHHHH--HCSEEEEEE
T ss_pred HHHHH--hCCEEEEEe
Confidence 65321 233445554
No 315
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.17 E-value=0.026 Score=49.78 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+..+|+|+|.+|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 367999999999999999999987654
No 316
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.15 E-value=0.013 Score=45.13 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|.|+|.+|+|||||+..+....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 458899999999999999998753
No 317
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.13 E-value=0.0095 Score=48.03 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...|.|.|++|+||||||..++....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 36789999999999999999987643
No 318
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.11 E-value=0.043 Score=45.13 Aligned_cols=38 Identities=24% Similarity=0.147 Sum_probs=27.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
-.|.+.|.||+||||+|..++.....+ .++ +..+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~-G~~-V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ-GVR-VMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT-TCC-EEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC-CCC-EEEEEeCC
Confidence 458889999999999999999887654 233 44455544
No 319
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.10 E-value=0.017 Score=46.06 Aligned_cols=27 Identities=22% Similarity=0.012 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
.++.|+|+.|+||||++..++.+....
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 578899999999999998887776543
No 320
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.09 E-value=0.011 Score=51.40 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=23.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..++++|+|+.|+|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 45789999999999999999998754
No 321
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.09 E-value=0.0062 Score=57.86 Aligned_cols=46 Identities=15% Similarity=0.118 Sum_probs=34.3
Q ss_pred ccccchHHHHHHHHHHhhcCCCc-----------EEEEEeCCCCcHHHHHHHHHHHh
Q 043850 83 EIFDSRKEIFQVVMESLKDDKLK-----------VIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~~~~~-----------vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+.++|.+...+.+...+.....+ -|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 56789988777665555433211 58899999999999999998654
No 322
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.08 E-value=0.42 Score=41.64 Aligned_cols=97 Identities=9% Similarity=-0.017 Sum_probs=55.4
Q ss_pred HHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHH
Q 043850 95 VMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTD 174 (309)
Q Consensus 95 l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 174 (309)
+.+.+...-.++..++|..|.||++.+..+....... .|+....+.+....+..++...+..
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~----------------- 70 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA----------------- 70 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH-----------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC-----------------
Confidence 3344443456799999999999999999998876543 3542222233333344333322211
Q ss_pred HHHHHHhcCCeEEEEEeCCCC-ccC----------CCCCCCcEEEEeeCC
Q 043850 175 GLRKRLNKEMRVLIILDNIWT-KLE----------KDDQERCTIVLISRS 213 (309)
Q Consensus 175 ~l~~~L~~~~r~LlVlDdv~~-~~~----------~~~~~gs~iliTtR~ 213 (309)
.-+.++ +-++|+|++.. ... .....++.+|++|..
T Consensus 71 ---~plf~~-~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~ 116 (343)
T 1jr3_D 71 ---MSLFAS-RQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK 116 (343)
T ss_dssp ---HHHCCS-CEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESC
T ss_pred ---cCCccC-CeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 011233 57888999876 332 333456767766643
No 323
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.05 E-value=0.023 Score=50.29 Aligned_cols=107 Identities=11% Similarity=0.128 Sum_probs=59.1
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHH--HHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYR--KIEDQFAFDLGMKLDLNDSTLERTDGLRKR 179 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 179 (309)
....+++|+|+.|+|||||.+.+....... ....+. .+.+..... .. ..+..+. ............+...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~-t~ed~~e~~~~~~-~~~v~q~----~~~~~~~~~~~~La~a 192 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHIL-TIEDPIEFVHESK-KCLVNQR----EVHRDTLGFSEALRSA 192 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEE-EEESSCCSCCCCS-SSEEEEE----EBTTTBSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEE-EccCcHHhhhhcc-ccceeee----eeccccCCHHHHHHHH
Confidence 344599999999999999999998776543 122222 222211100 00 0000000 0001112344467777
Q ss_pred HhcCCeEEEEEeCCCCccC-----CCCCCCcEEEEeeCCcccc
Q 043850 180 LNKEMRVLIILDNIWTKLE-----KDDQERCTIVLISRSRDLL 217 (309)
Q Consensus 180 L~~~~r~LlVlDdv~~~~~-----~~~~~gs~iliTtR~~~v~ 217 (309)
|..+ +=+|++|++.+... .....|..+|+|+...+.+
T Consensus 193 L~~~-PdvillDEp~d~e~~~~~~~~~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 193 LRED-PDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TTSC-CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEESCSSHH
T ss_pred hhhC-cCEEecCCCCCHHHHHHHHHHHhcCCEEEEEEccChHH
Confidence 7775 67888999875443 2223466688998887653
No 324
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.03 E-value=0.076 Score=47.23 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=40.5
Q ss_pred cccchHHHHHHHHHHh------------hcCCCcEEEEEe-CCCCcHHHHHHHHHHHhhcccCCCeEEEEEec
Q 043850 84 IFDSRKEIFQVVMESL------------KDDKLKVIGVYG-MGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT 143 (309)
Q Consensus 84 ~~~gR~~~~~~l~~~L------------~~~~~~vi~I~G-~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 143 (309)
.+..-+..+.++.+.. ...+.++|+|+| -||+||||+|..++...... =..++.+++.
T Consensus 111 kyq~~~~i~~ei~~~~~e~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~--g~rVlliD~D 181 (373)
T 3fkq_A 111 KYQRVDVIFKQILGVYSDMAANVATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANM--GKKVFYLNIE 181 (373)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCCCCCCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred ccCCHHHHHHHHHHHHhhcccccccccccCCCceEEEEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 3445666677776654 123468888885 99999999999998877654 2356777754
No 325
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.03 E-value=0.037 Score=46.58 Aligned_cols=38 Identities=18% Similarity=0.441 Sum_probs=29.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
++|+|.|-||+||||+|..++...... =..++-++...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCCC
Confidence 578889999999999999999887644 22566666653
No 326
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.00 E-value=0.014 Score=46.08 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
-.|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998754
No 327
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.99 E-value=0.029 Score=51.24 Aligned_cols=89 Identities=18% Similarity=0.204 Sum_probs=55.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccC--CCeEEEEEecCCC-CHHHHHHHHHHHhCCCC------CCCCCHH-----
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKL--FDKVVMAEVTQTP-DYRKIEDQFAFDLGMKL------DLNDSTL----- 170 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~----- 170 (309)
.-++|.|.+|+|||+|+.+++++....+. =+.++++-+++.. ...+++.++...=.... ..+....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 56778899999999999999988765321 1356777777664 45666777665411110 0011111
Q ss_pred -HHHHHHHHHHh--cCCeEEEEEeCC
Q 043850 171 -ERTDGLRKRLN--KEMRVLIILDNI 193 (309)
Q Consensus 171 -~~~~~l~~~L~--~~~r~LlVlDdv 193 (309)
...-.+.+++. .++.+||++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 12233555655 346899999997
No 328
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.99 E-value=0.017 Score=45.26 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=24.6
Q ss_pred HHHHHhhc-CCCcEEEEEeCCCCcHHHHHHHHHH
Q 043850 94 VVMESLKD-DKLKVIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 94 ~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~ 126 (309)
++.+.+.. .....|+|+|.+|+|||||...+..
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34443333 4567799999999999999988864
No 329
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.99 E-value=0.014 Score=51.63 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=64.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcc---cCCCe----------------EEEEEecCC------CCH---------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMED---KLFDK----------------VVMAEVTQT------PDY--------- 148 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~----------------~~wv~~~~~------~~~--------- 148 (309)
.-.+++|+|+.|+|||||.+.++.-.... =.|+. +.+|. ++ .++
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vf--Q~~~l~p~ltV~eni~~~l~ 106 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLV--QEGVLFPHLTVYRNIAYGLG 106 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEEC--TTCCCCTTSCHHHHHHTTST
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEe--CCCcCCCCCCHHHHHHHHHH
Confidence 34689999999999999999998754321 00111 11221 11 011
Q ss_pred ---------HHHHHHHHHHhCCCCCC-----CCCH-HHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CC
Q 043850 149 ---------RKIEDQFAFDLGMKLDL-----NDST-LERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KD 200 (309)
Q Consensus 149 ---------~~~~~~i~~~l~~~~~~-----~~~~-~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~ 200 (309)
.+-..++++.++..... ..+. +...-.+...|..+ +-+|+||+--+..+ ..
T Consensus 107 ~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~-P~lLLLDEPts~LD~~~r~~l~~~l~~~~ 185 (359)
T 3fvq_A 107 NGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPD-PELILLDEPFSALDEQLRRQIREDMIAAL 185 (359)
T ss_dssp TSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC-CSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 22345566666653211 1222 22333455555554 68999999877766 12
Q ss_pred CCCCcEEEEeeCCcccc
Q 043850 201 DQERCTIVLISRSRDLL 217 (309)
Q Consensus 201 ~~~gs~iliTtR~~~v~ 217 (309)
...|..+|++|.+...+
T Consensus 186 ~~~g~tvi~vTHd~~ea 202 (359)
T 3fvq_A 186 RANGKSAVFVSHDREEA 202 (359)
T ss_dssp HHTTCEEEEECCCHHHH
T ss_pred HhCCCEEEEEeCCHHHH
Confidence 23577799999987654
No 330
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.98 E-value=0.015 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 331
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.98 E-value=0.035 Score=52.12 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=35.4
Q ss_pred ccccchHHHHHHHHHHh--hcCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 83 EIFDSRKEIFQVVMESL--KDDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
+..+.|.+..+.+.+.. ......+|.+.|++|+||||+|+.+......
T Consensus 349 p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 349 PEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 34455666666666665 2234578999999999999999999887654
No 332
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.97 E-value=0.026 Score=53.23 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=24.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
...+|.|.|++|+||||+|+.+......
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 4468999999999999999999987663
No 333
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.97 E-value=0.019 Score=46.60 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.1
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.....|.|+|.+|+|||||+..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345779999999999999999998754
No 334
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.96 E-value=0.022 Score=44.88 Aligned_cols=26 Identities=42% Similarity=0.534 Sum_probs=22.1
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999998754
No 335
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.96 E-value=0.041 Score=46.96 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=29.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
.++|+|.|-||+||||+|..++...... =..++-+++..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 3678889999999999999999887653 12456666653
No 336
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.96 E-value=0.015 Score=44.51 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-|+|+|.+|+|||||...+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458899999999999999998754
No 337
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.94 E-value=0.018 Score=53.74 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=24.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
...+|.++|++|+||||+|+.++.....
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~ 61 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW 61 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999877643
No 338
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.94 E-value=0.012 Score=53.57 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
+.+|.|+|.+|+||||++..++.....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999887654
No 339
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.93 E-value=0.017 Score=44.30 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
-|+|+|.+|+|||||...+....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999997654
No 340
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.92 E-value=0.025 Score=48.81 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 92 FQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 92 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
+++|.+.+. -.+++|+|+.|+|||||.+.+. ...
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 345555553 2589999999999999999998 443
No 341
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.91 E-value=0.013 Score=49.70 Aligned_cols=118 Identities=15% Similarity=0.167 Sum_probs=65.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEE----------------EecCCC----CHH--------------
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMA----------------EVTQTP----DYR-------------- 149 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv----------------~~~~~~----~~~-------------- 149 (309)
-.+++|+|+.|+|||||.+.++... .. .+.+++ .+.+++ ++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~ 105 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDR 105 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCH
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHH
Confidence 4689999999999999999997654 21 111111 122221 221
Q ss_pred HHHHHHHHHhCCC-CCC-----CCCHHH-HHHHHHHHHhcCCeEEEEEeCCCCccC-----------CCCCCCcEEEEee
Q 043850 150 KIEDQFAFDLGMK-LDL-----NDSTLE-RTDGLRKRLNKEMRVLIILDNIWTKLE-----------KDDQERCTIVLIS 211 (309)
Q Consensus 150 ~~~~~i~~~l~~~-~~~-----~~~~~~-~~~~l~~~L~~~~r~LlVlDdv~~~~~-----------~~~~~gs~iliTt 211 (309)
+...++++.++.. ... ..+..+ ..-.+...|..+ +-+|+||+..+..+ ..... .||++|
T Consensus 106 ~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~-p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivt 182 (263)
T 2pjz_A 106 DLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQ-PEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVT 182 (263)
T ss_dssp HHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTC-CSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEE
T ss_pred HHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhC-CCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEE
Confidence 2234556666654 211 122222 223344455554 67999999988776 11112 688888
Q ss_pred CCccccccccCCC-ceEecC
Q 043850 212 RSRDLLCNDMNSQ-KDFWID 230 (309)
Q Consensus 212 R~~~v~~~~~~~~-~~~~l~ 230 (309)
++...+.. ... +++.+.
T Consensus 183 Hd~~~~~~--~~d~~i~~l~ 200 (263)
T 2pjz_A 183 HELDMLNL--YKEYKAYFLV 200 (263)
T ss_dssp SCGGGGGG--CTTSEEEEEE
T ss_pred cCHHHHHH--hcCceEEEEE
Confidence 88765331 233 455554
No 342
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.90 E-value=0.011 Score=48.92 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
...+|+|.|..|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999998765
No 343
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.90 E-value=0.072 Score=55.37 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-..++|+|..|+|||||++.+.....
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc
Confidence 457899999999999999999976544
No 344
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.89 E-value=0.019 Score=45.24 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..+.+|+|..|+|||||+..++--.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3588999999999999999987654
No 345
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.88 E-value=0.016 Score=47.21 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.+|+|.|+.|+||||+++.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998754
No 346
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.88 E-value=0.017 Score=44.28 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
-|+|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999988654
No 347
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.87 E-value=0.017 Score=44.37 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
-|+|+|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
No 348
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.86 E-value=0.018 Score=44.84 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.2
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.+...|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34577899999999999999998764
No 349
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.86 E-value=0.016 Score=44.99 Aligned_cols=24 Identities=38% Similarity=0.371 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 468999999999999999987543
No 350
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.85 E-value=0.017 Score=44.55 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998653
No 351
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.85 E-value=0.017 Score=45.47 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||+..+....
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998753
No 352
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.83 E-value=0.018 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
-|+|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 353
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.82 E-value=0.024 Score=52.69 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=37.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCC-HHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPD-YRKIEDQF 155 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 155 (309)
-..++|.|..|+|||+|+.++++.. +-+.++++-+++..+ ..+++.++
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4678999999999999999987753 246788888888765 45555554
No 354
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.81 E-value=0.017 Score=45.14 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999865
No 355
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.80 E-value=0.018 Score=45.63 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||+..+.+..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999887754
No 356
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.80 E-value=0.018 Score=44.36 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999998764
No 357
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.77 E-value=0.017 Score=51.09 Aligned_cols=114 Identities=16% Similarity=0.195 Sum_probs=63.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhccc---CCC------------eEEEEEec----CCCCHH--------------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDK---LFD------------KVVMAEVT----QTPDYR-------------- 149 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~------------~~~wv~~~----~~~~~~-------------- 149 (309)
.-.+++|+|+.|+|||||.+.++.-..... .|+ .+.++.-. ...++.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~ 119 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK 119 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCH
Confidence 347899999999999999999986543210 010 12222111 011111
Q ss_pred ----HHHHHHHHHhCCCCCC-----CCCH-HHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcE
Q 043850 150 ----KIEDQFAFDLGMKLDL-----NDST-LERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQERCT 206 (309)
Q Consensus 150 ----~~~~~i~~~l~~~~~~-----~~~~-~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~ 206 (309)
+-..++++.++..... ..+. +...-.+...|..+ +-+|+||+--+..+ .....|..
T Consensus 120 ~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~-P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 198 (355)
T 1z47_A 120 DEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPR-PQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198 (355)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC-CSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcC-CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 2234455655553211 1222 22333445555554 68999999877776 11223667
Q ss_pred EEEeeCCcccc
Q 043850 207 IVLISRSRDLL 217 (309)
Q Consensus 207 iliTtR~~~v~ 217 (309)
+|++|.+...+
T Consensus 199 vi~vTHd~~~a 209 (355)
T 1z47_A 199 SVFVTHDQEEA 209 (355)
T ss_dssp EEEECSCHHHH
T ss_pred EEEECCCHHHH
Confidence 89999987654
No 358
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.77 E-value=0.019 Score=44.74 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=21.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..-|+|+|.+|+|||||...+....
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568999999999999999998763
No 359
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.76 E-value=0.015 Score=49.95 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-.+++|+|..|+|||||.+.++.-..
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 447899999999999999999987654
No 360
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.76 E-value=0.019 Score=44.15 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358899999999999999998643
No 361
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.76 E-value=0.017 Score=44.39 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 043850 106 VIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~ 126 (309)
-|+|+|.+|+|||||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999998854
No 362
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.75 E-value=0.017 Score=51.22 Aligned_cols=115 Identities=20% Similarity=0.242 Sum_probs=65.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhccc---CCC-----------------eEEEEEec----CCCCHH---------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDK---LFD-----------------KVVMAEVT----QTPDYR--------- 149 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~-----------------~~~wv~~~----~~~~~~--------- 149 (309)
.-.+++|+|+.|+|||||.+.+..-..... .|+ .+.++.-. ...++.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~ 132 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 132 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh
Confidence 447899999999999999999876543210 000 12222110 011111
Q ss_pred ---------HHHHHHHHHhCCCCCC-----CCCHH-HHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCC
Q 043850 150 ---------KIEDQFAFDLGMKLDL-----NDSTL-ERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDD 201 (309)
Q Consensus 150 ---------~~~~~i~~~l~~~~~~-----~~~~~-~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~ 201 (309)
+...++++.++..... ..+.. ...-.+...|..+ +-+|++|..-+..+ ...
T Consensus 133 ~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~-P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~ 211 (366)
T 3tui_C 133 DNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN-PKVLLCDQATSALDPATTRSILELLKDINR 211 (366)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTC-CSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcC-CCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 1234455555543211 12222 2333455556665 68999999988777 222
Q ss_pred CCCcEEEEeeCCccccc
Q 043850 202 QERCTIVLISRSRDLLC 218 (309)
Q Consensus 202 ~~gs~iliTtR~~~v~~ 218 (309)
..|..||++|.+-.++.
T Consensus 212 ~~g~Tii~vTHdl~~~~ 228 (366)
T 3tui_C 212 RLGLTILLITHEMDVVK 228 (366)
T ss_dssp HSCCEEEEEESCHHHHH
T ss_pred hCCCEEEEEecCHHHHH
Confidence 34778999999876643
No 363
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.75 E-value=0.02 Score=45.45 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.4
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.+...|+|+|.+|+|||||...+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34578999999999999999999764
No 364
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.75 E-value=0.041 Score=45.53 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=30.7
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCH
Q 043850 107 IGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDY 148 (309)
Q Consensus 107 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 148 (309)
|+|.|-||+||||+|..++....... ..++-++.....++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l 42 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcCh
Confidence 66699999999999999998887542 45677777654443
No 365
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.74 E-value=0.018 Score=44.44 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 043850 106 VIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~ 126 (309)
-|+|+|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999999853
No 366
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.74 E-value=0.019 Score=44.82 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...-|+|+|.+|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34568999999999999999988754
No 367
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.73 E-value=0.011 Score=51.21 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45799999999999999999987654
No 368
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.72 E-value=0.018 Score=51.07 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
...++|+|..|+|||||++.++.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999887654
No 369
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.72 E-value=0.016 Score=44.73 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999864
No 370
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.71 E-value=0.019 Score=44.63 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998653
No 371
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.71 E-value=0.034 Score=50.33 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=24.8
Q ss_pred cCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 101 DDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 101 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.....+++|+|+.|+|||||.+.+.....
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 34557999999999999999999988764
No 372
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.69 E-value=0.05 Score=47.76 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=25.3
Q ss_pred cCCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 101 DDKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 101 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
-....+++|+|.+|+|||||.+.+......
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 345689999999999999999999876543
No 373
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.69 E-value=0.023 Score=45.95 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=24.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..+|+|.|+.|+||||+++.++.....
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 368999999999999999999988753
No 374
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.68 E-value=0.029 Score=50.63 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
...+++|+|..|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999999999873
No 375
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.68 E-value=0.018 Score=51.37 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-.+++|+|+.|+|||||.+.++.-..
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 346899999999999999999987543
No 376
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.67 E-value=0.02 Score=43.99 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999998643
No 377
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.67 E-value=0.018 Score=50.93 Aligned_cols=114 Identities=20% Similarity=0.153 Sum_probs=64.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhccc---CCC------------eEEEEEecC----CCCHH--------------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDK---LFD------------KVVMAEVTQ----TPDYR-------------- 149 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~------------~~~wv~~~~----~~~~~-------------- 149 (309)
.-.+++|+|+.|+|||||.+.++.-..... .|+ .+.++.-.. ..++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISK 107 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHH
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 346899999999999999999986543210 010 122221100 01111
Q ss_pred ----HHHHHHHHHhCCCCCC-----CCCHH-HHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcE
Q 043850 150 ----KIEDQFAFDLGMKLDL-----NDSTL-ERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQERCT 206 (309)
Q Consensus 150 ----~~~~~i~~~l~~~~~~-----~~~~~-~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~ 206 (309)
+-..++++.++..... ..+.. ...-.+...|..+ +-+|+||+--+..+ .....|..
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~-P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 186 (359)
T 2yyz_A 108 DEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQ-PKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT 186 (359)
T ss_dssp HHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC-CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC-CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 2234566666653211 12222 2333455555554 68999999877776 11223667
Q ss_pred EEEeeCCcccc
Q 043850 207 IVLISRSRDLL 217 (309)
Q Consensus 207 iliTtR~~~v~ 217 (309)
+|++|.+...+
T Consensus 187 vi~vTHd~~~~ 197 (359)
T 2yyz_A 187 SVYVTHDQAEA 197 (359)
T ss_dssp EEEEESCHHHH
T ss_pred EEEEcCCHHHH
Confidence 89999987643
No 378
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.66 E-value=0.021 Score=45.45 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
...|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 379
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.65 E-value=0.032 Score=49.73 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=55.1
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEE-EEEecCCCCHHHHHHHHHHHhCCCCC--CCCCHHHHHHHHHH
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVV-MAEVTQTPDYRKIEDQFAFDLGMKLD--LNDSTLERTDGLRK 178 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~ 178 (309)
....+++|+|+.|+|||||++.+....... ....+ ++.- +... .+-..++.-.. ...+.......+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~--~~e~-----~~~~~~~~v~Q~~~g~~~~~~~~~l~~ 204 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIED--PIEY-----VFKHKKSIVNQREVGEDTKSFADALRA 204 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEES--SCCS-----CCCCSSSEEEEEEBTTTBSCSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecc--cHhh-----hhccCceEEEeeecCCCHHHHHHHHHH
Confidence 445789999999999999999998876543 12222 3321 1100 00000000000 00011122345666
Q ss_pred HHhcCCeEEEEEeCCCCccC-----CCCCCCcEEEEeeCCcc
Q 043850 179 RLNKEMRVLIILDNIWTKLE-----KDDQERCTIVLISRSRD 215 (309)
Q Consensus 179 ~L~~~~r~LlVlDdv~~~~~-----~~~~~gs~iliTtR~~~ 215 (309)
.|..+ +-+|++|++.+... .....|..++.|+...+
T Consensus 205 ~L~~~-pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 205 ALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNT 245 (372)
T ss_dssp HTTSC-CSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCS
T ss_pred HhhhC-cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcch
Confidence 66664 56788888865433 11234666777777654
No 380
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.63 E-value=0.02 Score=45.32 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.--|+|+|.+|+|||||+..+....
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 3468899999999999999988754
No 381
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.63 E-value=0.022 Score=47.02 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..++|.|++|+||||+|+.++....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 382
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.62 E-value=0.019 Score=50.91 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=63.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhccc---CCC------------eEEEEEec----CCCCHH--------------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDK---LFD------------KVVMAEVT----QTPDYR-------------- 149 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~------------~~~wv~~~----~~~~~~-------------- 149 (309)
.-.+++|+|+.|+|||||.+.++.-..... .|+ .+.++.-. ...++.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~ 107 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPR 107 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCH
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCH
Confidence 346899999999999999999987543210 010 12222110 001111
Q ss_pred ----HHHHHHHHHhCCCCCC-----CCCH-HHHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcE
Q 043850 150 ----KIEDQFAFDLGMKLDL-----NDST-LERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQERCT 206 (309)
Q Consensus 150 ----~~~~~i~~~l~~~~~~-----~~~~-~~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~ 206 (309)
+-..++++.++..... ..+. +...-.+...|..+ +-+|+||+--+..+ .....|..
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~-P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~t 186 (362)
T 2it1_A 108 EEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKE-PEVLLLDEPLSNLDALLRLEVRAELKRLQKELGIT 186 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTC-CSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcC-CCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 1234456666654221 1222 22333455555554 68999999877766 11223667
Q ss_pred EEEeeCCcccc
Q 043850 207 IVLISRSRDLL 217 (309)
Q Consensus 207 iliTtR~~~v~ 217 (309)
+|++|.+...+
T Consensus 187 vi~vTHd~~~a 197 (362)
T 2it1_A 187 TVYVTHDQAEA 197 (362)
T ss_dssp EEEEESCHHHH
T ss_pred EEEECCCHHHH
Confidence 88889887543
No 383
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.62 E-value=0.066 Score=48.66 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=54.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcc--------cCCC-eEEEEEecCCC-CHHHHHHHHHHH--hC------CCCCCC
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMED--------KLFD-KVVMAEVTQTP-DYRKIEDQFAFD--LG------MKLDLN 166 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~--l~------~~~~~~ 166 (309)
.-++|.|.+|+|||+|+.+++++.... .+-+ .++++-+++.. ...++..++... +. ...+.
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~- 226 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD- 226 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS-
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC-
Confidence 567899999999999999999886542 1222 66777777664 345566655442 10 00111
Q ss_pred CCHH-----HHHHHHHHHHhc--CCeEEEEEeCCCC
Q 043850 167 DSTL-----ERTDGLRKRLNK--EMRVLIILDNIWT 195 (309)
Q Consensus 167 ~~~~-----~~~~~l~~~L~~--~~r~LlVlDdv~~ 195 (309)
.... ...-.+.+++.. ++.+||++||+..
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1111 123345666652 5689999999844
No 384
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.61 E-value=0.047 Score=43.73 Aligned_cols=44 Identities=25% Similarity=0.309 Sum_probs=31.8
Q ss_pred cEEEEE-eCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHH
Q 043850 105 KVIGVY-GMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRK 150 (309)
Q Consensus 105 ~vi~I~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 150 (309)
++|+|+ +-||+||||+|..++...... =..++.++.....+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~--g~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS--GYNIAVVDTDPQMSLTN 46 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEECCCCCCHHH
Confidence 577777 689999999999999887654 23567777765544433
No 385
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.59 E-value=0.021 Score=44.32 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..-|.|+|.+|+|||||...+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998764
No 386
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.59 E-value=0.022 Score=43.97 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...|+|+|.+|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999997643
No 387
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.59 E-value=0.02 Score=51.06 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=22.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-.+++|+|+.|+|||||.+.++.-..
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 346899999999999999999986543
No 388
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.58 E-value=0.023 Score=45.35 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
--|+|+|.+|+|||||...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999998753
No 389
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.57 E-value=0.023 Score=44.85 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...|+|+|.+|+|||||...+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 4578999999999999999998764
No 390
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.55 E-value=0.023 Score=44.62 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|.|+|.+|+|||||...+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998754
No 391
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.55 E-value=0.02 Score=50.94 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34789999999999999999998654
No 392
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.54 E-value=0.023 Score=44.10 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 458899999999999999998653
No 393
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.54 E-value=0.066 Score=49.17 Aligned_cols=97 Identities=10% Similarity=0.105 Sum_probs=55.8
Q ss_pred HHHHhhc-CCCcEEEEEeCCCCcHHHHHH-HHHHHhhcccCCC-eEEEEEecCCC-CHHHHHHHHHHHhCCCCC------
Q 043850 95 VMESLKD-DKLKVIGVYGMGGVGKTTLVK-QVAMKVMEDKLFD-KVVMAEVTQTP-DYRKIEDQFAFDLGMKLD------ 164 (309)
Q Consensus 95 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~-~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------ 164 (309)
.++.|.. ..-.-++|.|.+|+|||+||. .+++... -+ .++++-+++.. ...++..++...=.....
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 3444432 233678999999999999965 6666542 45 45778888765 355666666553221110
Q ss_pred CCCCHHH------HHHHHHHHHhc-CCeEEEEEeCCCC
Q 043850 165 LNDSTLE------RTDGLRKRLNK-EMRVLIILDNIWT 195 (309)
Q Consensus 165 ~~~~~~~------~~~~l~~~L~~-~~r~LlVlDdv~~ 195 (309)
.+..... ..-.+-+++.. ++.+||++||+..
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 0122111 12234455532 3589999999843
No 394
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.53 E-value=0.061 Score=51.58 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHH
Q 043850 89 KEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFA 156 (309)
Q Consensus 89 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 156 (309)
+...+.+...|... .+..|+|++|+|||+.+.++....-.. ...+.++...+.-++.++..+.
T Consensus 192 ~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 192 TSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHH
Confidence 45556666666433 477899999999997666655544332 2356666665555666665554
No 395
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.53 E-value=0.024 Score=44.89 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 468899999999999999998765
No 396
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.53 E-value=0.019 Score=44.66 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+....
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 458899999999999999987643
No 397
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=94.52 E-value=0.087 Score=46.54 Aligned_cols=28 Identities=43% Similarity=0.457 Sum_probs=23.0
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
....++...|-||+||||+|..++....
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA 43 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMA 43 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3456677789999999999999887776
No 398
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.52 E-value=0.025 Score=52.01 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+|.++|++|+||||+++.++....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988765
No 399
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.52 E-value=0.022 Score=44.69 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358899999999999999998754
No 400
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.52 E-value=0.011 Score=49.96 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+...|+|.|..|+||||+++.+....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999988654
No 401
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.51 E-value=0.023 Score=44.81 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||+..+....
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999998754
No 402
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.49 E-value=0.033 Score=44.56 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~ 126 (309)
+...|+|+|.+|+|||||...+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999999864
No 403
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.49 E-value=0.023 Score=44.50 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.--|+|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998653
No 404
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.49 E-value=0.017 Score=45.10 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 458899999999999999998753
No 405
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.47 E-value=0.022 Score=44.84 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHH
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998765
No 406
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.46 E-value=0.017 Score=50.97 Aligned_cols=111 Identities=20% Similarity=0.213 Sum_probs=64.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEE----------------ecCC------CCHH-----------
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAE----------------VTQT------PDYR----------- 149 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~----------------~~~~------~~~~----------- 149 (309)
.-.+++|+|+.|+|||||.+.++.-.... .+.++++ +.++ .++.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~ 101 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK 101 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC
Confidence 34689999999999999999998654321 1222221 1121 1221
Q ss_pred ----HHHHHHHHHhCCCCCC-----CCCHH-HHHHHHHHHHhcCCeEEEEEeCCCCccC-------------CCCCCCcE
Q 043850 150 ----KIEDQFAFDLGMKLDL-----NDSTL-ERTDGLRKRLNKEMRVLIILDNIWTKLE-------------KDDQERCT 206 (309)
Q Consensus 150 ----~~~~~i~~~l~~~~~~-----~~~~~-~~~~~l~~~L~~~~r~LlVlDdv~~~~~-------------~~~~~gs~ 206 (309)
+-..++++.++..... ..+.. ...-.+...|..+ +-+|+||+--+..+ .....|..
T Consensus 102 ~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~-P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t 180 (348)
T 3d31_A 102 IKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTN-PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180 (348)
T ss_dssp CCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSC-CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC-CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 2234456666554221 12222 2333445555554 68999999877776 12234667
Q ss_pred EEEeeCCcccc
Q 043850 207 IVLISRSRDLL 217 (309)
Q Consensus 207 iliTtR~~~v~ 217 (309)
+|++|.+...+
T Consensus 181 ii~vTHd~~~~ 191 (348)
T 3d31_A 181 VLHITHDQTEA 191 (348)
T ss_dssp EEEEESCHHHH
T ss_pred EEEEeCCHHHH
Confidence 89999887543
No 407
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.45 E-value=0.025 Score=44.22 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...|+|+|.+|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998654
No 408
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.45 E-value=0.024 Score=44.87 Aligned_cols=23 Identities=43% Similarity=0.358 Sum_probs=19.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
--|+|+|.+|+|||||++.+.+.
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 45889999999999999766554
No 409
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.43 E-value=0.029 Score=44.66 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=22.2
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...--|+|+|.+|+|||||+..+....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 344568999999999999999998753
No 410
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.43 E-value=0.024 Score=44.96 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.--|+|+|.+|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 411
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.42 E-value=0.054 Score=47.56 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=24.9
Q ss_pred cCCCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 101 DDKLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 101 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+..+|+|+|.+|+|||||+..+.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999987654
No 412
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.41 E-value=0.025 Score=44.31 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999987643
No 413
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.41 E-value=0.025 Score=44.30 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..-|+|+|.+|+|||||...+....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3568899999999999999998754
No 414
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.40 E-value=0.051 Score=54.03 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~ 126 (309)
...+++|+|+.|.|||||.+.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 357999999999999999998864
No 415
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.40 E-value=0.078 Score=46.30 Aligned_cols=31 Identities=42% Similarity=0.455 Sum_probs=25.0
Q ss_pred cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 101 DDKLKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 101 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
+....++.+.|-||+||||+|..++......
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~ 46 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKV 46 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHTS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHC
Confidence 3445677788999999999999998877643
No 416
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.38 E-value=0.025 Score=44.12 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 417
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.37 E-value=0.026 Score=44.06 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|.|+|.+|+|||||...+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458899999999999999998753
No 418
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.36 E-value=0.026 Score=44.35 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.-|.|.|.+|+||||||..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56889999999999999999874
No 419
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.36 E-value=0.088 Score=43.02 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=24.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
...|.+.|+.|+||||+++.+......
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999988764
No 420
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.34 E-value=0.026 Score=43.94 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999988754
No 421
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.34 E-value=0.019 Score=45.99 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVA 125 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~ 125 (309)
...|+|+|.+|+|||||...+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999985
No 422
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.34 E-value=0.027 Score=45.10 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...-|+|+|.+|+|||||+..+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34578999999999999999998754
No 423
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.34 E-value=0.027 Score=45.50 Aligned_cols=25 Identities=32% Similarity=0.252 Sum_probs=21.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.--|+|+|.+|+|||||+..+....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998753
No 424
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.33 E-value=0.027 Score=45.35 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=21.4
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..-|+|+|.+|+|||||+..+....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3568999999999999999988653
No 425
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.32 E-value=0.025 Score=50.66 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.-.+++|+|+.|+|||||.+.++.-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4478999999999999999999764
No 426
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.32 E-value=0.04 Score=47.52 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=25.9
Q ss_pred HHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 92 FQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 92 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
++++...+. -.+++|+|++|+|||||.+.+....
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhcccc
Confidence 345555553 2589999999999999999987543
No 427
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.31 E-value=0.026 Score=45.08 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..-|+|+|.+|+|||||...+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568999999999999999988654
No 428
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.31 E-value=0.18 Score=41.73 Aligned_cols=41 Identities=17% Similarity=0.049 Sum_probs=29.0
Q ss_pred ccchHHHHHHHHHHhhcCCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 85 FDSRKEIFQVVMESLKDDKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 85 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+.-|+.+.+.+..++... -+.|+|..|.|||.+|..++...
T Consensus 92 ~~l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 444555555555555432 37889999999999998887654
No 429
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.29 E-value=0.024 Score=44.14 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
..-|+|+|.+|+|||||...+...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998654
No 430
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.29 E-value=0.028 Score=44.64 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 431
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.29 E-value=0.026 Score=45.14 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=21.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...|+|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998754
No 432
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.28 E-value=0.082 Score=42.83 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=32.0
Q ss_pred EEEEE-eCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHH
Q 043850 106 VIGVY-GMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKI 151 (309)
Q Consensus 106 vi~I~-G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 151 (309)
+|+|+ +-||+||||+|..++...... - .++-++.....+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~--g-~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQ--G-ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTT--S-CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhc--C-CEEEEECCCCCCHHHH
Confidence 56664 789999999999999888765 2 6778887766544433
No 433
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.27 E-value=0.027 Score=44.69 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.--|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568999999999999999998764
No 434
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.26 E-value=0.028 Score=44.46 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+....
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998654
No 435
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.24 E-value=0.031 Score=49.32 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
.-.+++|+|..|+|||||.+.+++....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4479999999999999999999988653
No 436
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.24 E-value=0.017 Score=46.45 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=21.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.....|+|+|..|+|||||.+.+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44568999999999999999987653
No 437
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.23 E-value=0.016 Score=51.29 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 438
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.22 E-value=0.028 Score=45.39 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
....|+|+|.+|+|||||...+....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678999999999999999998754
No 439
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.21 E-value=0.024 Score=45.16 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=21.3
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHH
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~ 126 (309)
...--|+|+|.+|+|||||...+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4456799999999999999999864
No 440
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.21 E-value=0.11 Score=45.26 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=26.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEec
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT 143 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 143 (309)
..++...|-||+||||+|..++...... =..++-|+..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~D 51 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS--GKKTLVISTD 51 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEeCC
Confidence 3566778999999999999998876543 2234445443
No 441
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.20 E-value=0.03 Score=44.49 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=21.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
..--|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3456899999999999999999874
No 442
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.19 E-value=0.029 Score=44.51 Aligned_cols=25 Identities=36% Similarity=0.324 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.--|+|+|.+|+|||||...+....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568899999999999999998764
No 443
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.18 E-value=0.027 Score=46.54 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhhcc
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVMED 131 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~ 131 (309)
...|.|.|+.|+||||+++.++......
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4689999999999999999999887653
No 444
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.16 E-value=0.03 Score=44.23 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+....
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 445
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.14 E-value=0.024 Score=48.99 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=18.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHH
Q 043850 106 VIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~ 126 (309)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999764
No 446
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.14 E-value=0.025 Score=50.21 Aligned_cols=26 Identities=42% Similarity=0.510 Sum_probs=22.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
-..++|+|..|+|||||++.+.....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 36899999999999999999987654
No 447
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.13 E-value=0.03 Score=44.30 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 448
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.13 E-value=0.03 Score=44.36 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358899999999999999998653
No 449
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.12 E-value=0.031 Score=44.18 Aligned_cols=25 Identities=32% Similarity=0.266 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..-|+|+|.+|+|||||...+....
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC
Confidence 3568999999999999999988653
No 450
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.11 E-value=0.16 Score=56.14 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=36.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDL 159 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 159 (309)
+-|.++|++|+|||++|+.+..... .+ ..+.++.+...+...+...+-..+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~ 1318 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHT 1318 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHB
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHh
Confidence 6788999999999999988765431 12 345677777777766666555544
No 451
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.11 E-value=0.21 Score=45.83 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=51.7
Q ss_pred CcEEEEEeCCCCcHHHHH-HHHHHHhhcccCCC-eEEEEEecCCC-CHHHHHHHHHHHhCCCCC------CCCCHHH---
Q 043850 104 LKVIGVYGMGGVGKTTLV-KQVAMKVMEDKLFD-KVVMAEVTQTP-DYRKIEDQFAFDLGMKLD------LNDSTLE--- 171 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~~~~~--- 171 (309)
-.-++|.|..|+|||+|+ ..+.++. +-+ .++++-+++.. ...++..++...=..... .+.....
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 357889999999999997 4565542 234 46788888775 356666665543211110 0111111
Q ss_pred ---HHHHHHHHHh-cCCeEEEEEeCCCC
Q 043850 172 ---RTDGLRKRLN-KEMRVLIILDNIWT 195 (309)
Q Consensus 172 ---~~~~l~~~L~-~~~r~LlVlDdv~~ 195 (309)
..-.+-+++. .++.+||++||+..
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 1222344442 23589999999854
No 452
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.08 E-value=0.05 Score=43.91 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=22.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
....+|+|+|++|+||+|+|..+.+..
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 345799999999999999999886644
No 453
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.08 E-value=0.036 Score=45.02 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.--|+|+|.+|+|||||...+....
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568899999999999999998754
No 454
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.05 E-value=0.033 Score=44.64 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-|+|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 455
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.04 E-value=0.032 Score=45.64 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHH
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
-|.|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999998764
No 456
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.02 E-value=0.032 Score=44.53 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=21.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...-|+|+|.+|+|||||...+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 45678999999999999999997643
No 457
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.02 E-value=0.033 Score=43.99 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 458
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.02 E-value=0.092 Score=49.70 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=31.1
Q ss_pred cCCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEec
Q 043850 101 DDKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT 143 (309)
Q Consensus 101 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 143 (309)
....+++.+.|-||+||||+|..++...... =..++.|+..
T Consensus 5 ~~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~--G~rVLlvd~D 45 (589)
T 1ihu_A 5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQ--GKRVLLVSTD 45 (589)
T ss_dssp SSCCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred CCCCEEEEEeCCCcCHHHHHHHHHHHHHHHC--CCcEEEEECC
Confidence 3456788999999999999999998877654 2245666654
No 459
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.01 E-value=0.03 Score=45.57 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=19.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAM 126 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~ 126 (309)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999998873
No 460
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.01 E-value=0.037 Score=52.57 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
...+|.|.|++|+||||+|+.+.....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998764
No 461
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.98 E-value=0.028 Score=44.97 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||+..+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999987654
No 462
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.96 E-value=0.037 Score=43.47 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.....|+|+|.+|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678999999999999999988654
No 463
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.95 E-value=0.027 Score=44.88 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=20.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.--|.|+|.+|+|||||.+.+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456899999999999999876653
No 464
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.03 Score=51.31 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=23.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
.-.+++|+|..|+|||||++.++.-..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 447899999999999999999988654
No 465
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.92 E-value=0.036 Score=44.59 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-|+|+|.+|+|||||...+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999988643
No 466
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.90 E-value=0.088 Score=42.62 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..|+|-|.-|+||||+++.++....
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4688999999999999999999885
No 467
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.89 E-value=0.068 Score=49.20 Aligned_cols=88 Identities=13% Similarity=0.082 Sum_probs=52.2
Q ss_pred CcEEEEEeCCCCcHHHHHH-HHHHHhhcccCCC-eEEEEEecCCC-CHHHHHHHHHHHhCCC------CCCCCCHHH---
Q 043850 104 LKVIGVYGMGGVGKTTLVK-QVAMKVMEDKLFD-KVVMAEVTQTP-DYRKIEDQFAFDLGMK------LDLNDSTLE--- 171 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~-~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~--- 171 (309)
-.-++|.|.+|+|||+||. .+++... .+ .++++-+++.. .+.++..++...=... ...+.....
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 3678999999999999965 6666542 45 45778888765 3556666665421110 000111111
Q ss_pred ---HHHHHHHHHhc-CCeEEEEEeCCCC
Q 043850 172 ---RTDGLRKRLNK-EMRVLIILDNIWT 195 (309)
Q Consensus 172 ---~~~~l~~~L~~-~~r~LlVlDdv~~ 195 (309)
..-.+-+++.. ++.+||++||+..
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHHH
Confidence 12234455532 3589999999843
No 468
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.89 E-value=0.037 Score=43.83 Aligned_cols=24 Identities=38% Similarity=0.339 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||...+.+..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998763
No 469
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.85 E-value=0.07 Score=44.86 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=26.7
Q ss_pred HHHHHHHhhcC--CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 92 FQVVMESLKDD--KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 92 ~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
+.++.+.+... ....|+|+|.+|+|||||...+....
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 33444444332 34678999999999999999998654
No 470
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.85 E-value=0.033 Score=46.05 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 45679999999999999999988643
No 471
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.84 E-value=0.038 Score=44.50 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|.+|+|||||+..+.+..
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999988653
No 472
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.84 E-value=0.036 Score=44.35 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=20.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356889999999999999998754
No 473
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.84 E-value=0.038 Score=44.27 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.--|+|+|.+|+|||||+..+....
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 4568999999999999999987643
No 474
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.82 E-value=0.035 Score=49.06 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.+++|+|.+|+|||||.+.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 589999999999999999987543
No 475
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.82 E-value=0.042 Score=45.00 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
....|+|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998765
No 476
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.78 E-value=0.036 Score=44.19 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.--|+|+|.+|+|||||...+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568899999999999999987543
No 477
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.78 E-value=0.04 Score=44.07 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.-|+|+|.+|+|||||...+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999988753
No 478
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.76 E-value=0.1 Score=45.93 Aligned_cols=38 Identities=37% Similarity=0.378 Sum_probs=26.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEe
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEV 142 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 142 (309)
...++.+.|-||+||||+|..++...... =..++-++.
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~ 62 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEK--GLKVVIVST 62 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHS--SCCEEEEEC
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 34566667999999999999998876543 123444543
No 479
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.76 E-value=0.18 Score=47.04 Aligned_cols=57 Identities=25% Similarity=0.273 Sum_probs=39.5
Q ss_pred HHHHhhc-CCCcEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCC-CHHHHHHHH
Q 043850 95 VMESLKD-DKLKVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTP-DYRKIEDQF 155 (309)
Q Consensus 95 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 155 (309)
.++.|.. ..-..++|.|..|+|||+|+.++++... -+.++++-+++.. ...+++.++
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 3444432 2346889999999999999999987643 4678888888763 344444443
No 480
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.75 E-value=0.029 Score=43.99 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
-.|+|+|.+|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 481
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.75 E-value=0.12 Score=47.59 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=53.8
Q ss_pred CcEEEEEeCCCCcHHHHH-HHHHHHhhc----ccCCC-eEEEEEecCCC-CHHHHHHHHHHHhCCCC------CCCCCHH
Q 043850 104 LKVIGVYGMGGVGKTTLV-KQVAMKVME----DKLFD-KVVMAEVTQTP-DYRKIEDQFAFDLGMKL------DLNDSTL 170 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~ 170 (309)
-.-++|.|.+|+|||+|| ..+++.... .++-+ .++++-+++.. ...++..++...=.... ..+....
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 367899999999999995 466666652 12244 57788888765 35566666654211110 0011111
Q ss_pred H------HHHHHHHHHhc-CCeEEEEEeCCCC
Q 043850 171 E------RTDGLRKRLNK-EMRVLIILDNIWT 195 (309)
Q Consensus 171 ~------~~~~l~~~L~~-~~r~LlVlDdv~~ 195 (309)
. ..-.+-+++.. ++.+||++||+..
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 1 12234455532 3589999999844
No 482
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.75 E-value=0.054 Score=44.52 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=23.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKVM 129 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 129 (309)
..+|+|.|+.|+||||+|+.++....
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998765
No 483
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.74 E-value=0.24 Score=42.48 Aligned_cols=53 Identities=19% Similarity=0.267 Sum_probs=36.8
Q ss_pred HHHHHHHHHh----hcCCCcEEEEEeC-CCCcHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 043850 90 EIFQVVMESL----KDDKLKVIGVYGM-GGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQ 144 (309)
Q Consensus 90 ~~~~~l~~~L----~~~~~~vi~I~G~-~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 144 (309)
+.+..|...| .+.+.++|.|.|. ||+||||+|..++...... =..++.|+...
T Consensus 86 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~--G~rVLLID~D~ 143 (299)
T 3cio_A 86 EAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQS--DQKVLFIDADL 143 (299)
T ss_dssp HHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhC--CCcEEEEECCC
Confidence 4455554443 2345689999985 8999999999998887653 23567777654
No 484
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.73 E-value=0.039 Score=44.31 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..-|+|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568999999999999999998653
No 485
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.73 E-value=0.038 Score=44.78 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=20.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHH
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
.--|+|+|.+|+|||||...+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999998754
No 486
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.69 E-value=0.039 Score=43.76 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=21.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
....|+|+|.+|+|||||...+....
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34679999999999999999987543
No 487
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.69 E-value=0.023 Score=55.90 Aligned_cols=48 Identities=25% Similarity=0.278 Sum_probs=36.3
Q ss_pred ccccchHHHHHHHHHHhhc-------------CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 83 EIFDSRKEIFQVVMESLKD-------------DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 83 ~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..+.|-++..+.|.+.+.- .....+.++|++|+|||+||+.+++....
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~ 537 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567777777777766531 13456889999999999999999998753
No 488
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.68 E-value=0.038 Score=43.78 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHH
Q 043850 106 VIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 106 vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
++.|+|.+|+|||++|.+++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999998854
No 489
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.67 E-value=0.045 Score=46.30 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...|+|+|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999997653
No 490
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.66 E-value=0.16 Score=43.34 Aligned_cols=52 Identities=27% Similarity=0.282 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCcEEEEEe---CCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 043850 91 IFQVVMESLKDDKLKVIGVYG---MGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQT 145 (309)
Q Consensus 91 ~~~~l~~~L~~~~~~vi~I~G---~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 145 (309)
.+.++.+.+.. ..++|+|++ -||+||||+|..++...... =..++-|+....
T Consensus 22 ~~~~~~r~~~~-~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~--G~rVlliD~D~q 76 (298)
T 2oze_A 22 ILEELRRILSN-KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKL--NLKVLMIDKDLQ 76 (298)
T ss_dssp HHHHHHHHHHH-HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHT--TCCEEEEEECTT
T ss_pred HHHHHHHHhcC-CCcEEEEEeccCCCCchHHHHHHHHHHHHHhC--CCeEEEEeCCCC
Confidence 34455554432 346777776 99999999999999877643 124666666543
No 491
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.65 E-value=0.022 Score=44.65 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=9.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHH
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~ 127 (309)
--|+|+|.+|+|||||...+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999988754
No 492
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.64 E-value=0.04 Score=47.51 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 104 LKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 104 ~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
...|+|+|.+|+|||||...+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4589999999999999999998753
No 493
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.63 E-value=0.027 Score=49.31 Aligned_cols=100 Identities=17% Similarity=0.141 Sum_probs=53.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhhcccCCCeEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVTQTPDYRKIEDQFAFDLGMKLDLNDSTLERTDGLRKRLNKEM 184 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~~~ 184 (309)
..++|+|..|+|||||++.+...... -.+.+.+.-......... -+.++.-. .........+...|..+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~---~~g~i~i~~~~e~~~~~~----~~~i~~~~---ggg~~~r~~la~aL~~~- 240 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK---EERIISIEDTEEIVFKHH----KNYTQLFF---GGNITSADCLKSCLRMR- 240 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT---TSCEEEEESSCCCCCSSC----SSEEEEEC---BTTBCHHHHHHHHTTSC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC---CCcEEEECCeeccccccc----hhEEEEEe---CCChhHHHHHHHHhhhC-
Confidence 58999999999999999999876543 234555542211110000 00000000 01123444555666664
Q ss_pred eEEEEEeCCCCccC-----CCCCCCcEEEEeeCCcc
Q 043850 185 RVLIILDNIWTKLE-----KDDQERCTIVLISRSRD 215 (309)
Q Consensus 185 r~LlVlDdv~~~~~-----~~~~~gs~iliTtR~~~ 215 (309)
+-+|++|++.+... .....+..+|+||....
T Consensus 241 p~ilildE~~~~e~~~~l~~~~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 241 PDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGS 276 (330)
T ss_dssp CSEEEECCCCSTHHHHHHHHHHTTCCCEEEEEECSS
T ss_pred CCEEEEcCCChHHHHHHHHHHhcCCCEEEEEEcccH
Confidence 67888999876332 11111223677777654
No 494
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.59 E-value=0.044 Score=49.92 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=24.8
Q ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHhhc
Q 043850 102 DKLKVIGVYGMGGVGKTTLVKQVAMKVME 130 (309)
Q Consensus 102 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 130 (309)
..-..++|+|..|+|||||++.++.....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 34479999999999999999999987653
No 495
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.57 E-value=0.092 Score=44.76 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 103 KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 103 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
....|+|+|.+|+|||||...+....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 35689999999999999999998653
No 496
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.57 E-value=0.039 Score=43.78 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=19.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 105 KVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 105 ~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
--|+|+|..|+|||||...+....
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999987543
No 497
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.53 E-value=0.036 Score=50.17 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHH
Q 043850 107 IGVYGMGGVGKTTLVKQVAMK 127 (309)
Q Consensus 107 i~I~G~~GiGKTtLa~~v~~~ 127 (309)
++|+|..|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999998764
No 498
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.51 E-value=0.097 Score=47.62 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHHhhc-----------CCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 86 DSRKEIFQVVMESLKD-----------DKLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 86 ~gR~~~~~~l~~~L~~-----------~~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
.|-++.++.|.+.+.. +....|+|+|.+|+|||||.+.+....
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 3667777777776631 123579999999999999999998764
No 499
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.50 E-value=0.1 Score=44.09 Aligned_cols=39 Identities=28% Similarity=0.402 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhcC--CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 043850 90 EIFQVVMESLKDD--KLKVIGVYGMGGVGKTTLVKQVAMKV 128 (309)
Q Consensus 90 ~~~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~ 128 (309)
..+.+++..+... ....|+++|.+|+|||||...+....
T Consensus 23 ~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 23 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3344444444332 34578999999999999999998654
No 500
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.42 E-value=0.073 Score=43.92 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=28.8
Q ss_pred CCcEEEEEe-CCCCcHHHHHHHHHHHhhcccCCCeEEEEEec
Q 043850 103 KLKVIGVYG-MGGVGKTTLVKQVAMKVMEDKLFDKVVMAEVT 143 (309)
Q Consensus 103 ~~~vi~I~G-~~GiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 143 (309)
..++|+|++ -||+||||+|..++....... =..++.+++.
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~-g~~VlliD~D 43 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEP-DIHVLAVDIS 43 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTST-TCCEEEEECC
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCc-CCCEEEEECC
Confidence 357787775 699999999999998876541 1245666664
Done!