Your job contains 1 sequence.
>043853
MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC
AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV
QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL
DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 043853
(222 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2094776 - symbol:AT3G21300 species:3702 "Arabi... 969 1.5e-97 1
TIGR_CMR|BA_0333 - symbol:BA_0333 "RNA methyltransferase,... 399 3.9e-37 1
UNIPROTKB|O31503 - symbol:rlmCD "23S rRNA (uracil-C(5))-m... 390 3.5e-36 1
TIGR_CMR|BA_0426 - symbol:BA_0426 "RNA methyltransferase,... 376 1.1e-34 1
TIGR_CMR|GSU_1452 - symbol:GSU_1452 "RNA methyltransferas... 357 1.1e-32 1
UNIPROTKB|Q8IZ69 - symbol:TRMT2A "tRNA (uracil-5-)-methyl... 354 9.9e-32 1
UNIPROTKB|F1M569 - symbol:Trmt2a "Protein Trmt2a" species... 342 1.9e-30 1
RGD|1310418 - symbol:Trmt2a "tRNA methyltransferase 2 hom... 342 1.9e-30 1
UNIPROTKB|D4A993 - symbol:Trmt2a "Protein Trmt2a" species... 342 2.1e-30 1
ZFIN|ZDB-GENE-030131-6876 - symbol:trmt2a "trm2 tRNA meth... 339 4.2e-30 1
UNIPROTKB|E1BRR1 - symbol:LOC100858909 "Uncharacterized p... 331 6.2e-30 1
UNIPROTKB|F1P0L5 - symbol:TRMT2A "Uncharacterized protein... 334 1.4e-29 1
UNIPROTKB|F1PQ26 - symbol:TRMT2A "Uncharacterized protein... 334 1.5e-29 1
UNIPROTKB|F1RHM9 - symbol:TRMT2A "Uncharacterized protein... 333 1.9e-29 1
ZFIN|ZDB-GENE-050809-101 - symbol:trmt2b "TRM2 tRNA methy... 325 3.1e-29 1
UNIPROTKB|E1BMX2 - symbol:TRMT2A "Uncharacterized protein... 326 9.4e-29 1
FB|FBgn0036838 - symbol:CG3808 species:7227 "Drosophila m... 320 4.9e-28 1
MGI|MGI:2442530 - symbol:Trmt2b "TRM2 tRNA methyltransfer... 305 8.4e-27 1
DICTYBASE|DDB_G0293244 - symbol:DDB_G0293244 "tRNA (uraci... 308 1.2e-26 1
TAIR|locus:2056553 - symbol:AT2G28450 species:3702 "Arabi... 199 4.3e-26 3
UNIPROTKB|Q96GJ1 - symbol:TRMT2B "tRNA (uracil(54)-C(5))-... 297 7.5e-26 1
UNIPROTKB|O58864 - symbol:PH1137 "tRNA (uracil(54)-C(5))-... 291 1.1e-25 1
TIGR_CMR|CHY_1112 - symbol:CHY_1112 "23S rRNA (uracil-5-)... 290 1.9e-25 1
MGI|MGI:96270 - symbol:Trmt2a "TRM2 tRNA methyltransferas... 214 1.7e-24 2
UNIPROTKB|Q8U1N4 - symbol:PF1172 "tRNA (uracil(54)-C(5))-... 279 2.0e-24 1
UNIPROTKB|Q9UZR7 - symbol:PYRAB10780 "tRNA (uracil(54)-C(... 277 3.3e-24 1
TIGR_CMR|SO_3456 - symbol:SO_3456 "RNA methyltransferase,... 272 2.7e-23 1
UNIPROTKB|F1S1L6 - symbol:LOC100517798 "Uncharacterized p... 266 1.9e-22 1
SGD|S000001764 - symbol:TRM2 "tRNA methyltransferase" spe... 262 1.1e-21 1
CGD|CAL0004099 - symbol:TRM2 species:5476 "Candida albica... 259 1.6e-21 1
CGD|CAL0001075 - symbol:orf19.4365 species:5476 "Candida ... 258 2.4e-21 1
UNIPROTKB|Q5A075 - symbol:TRM22 "Potential tRNA (Uracil-5... 258 2.4e-21 1
GENEDB_PFALCIPARUM|PF11_0348 - symbol:PF11_0348 "hypothet... 257 6.6e-21 1
UNIPROTKB|Q8II27 - symbol:PF11_0348 "RNA (Uracil-5-)methy... 257 6.6e-21 1
TIGR_CMR|DET_1065 - symbol:DET_1065 "RNA methyltransferas... 246 1.2e-20 1
WB|WBGene00019241 - symbol:H24K24.4 species:6239 "Caenorh... 198 1.3e-20 2
TIGR_CMR|SO_0980 - symbol:SO_0980 "RNA methyltransferase,... 243 2.2e-20 1
UNIPROTKB|Q9KPC1 - symbol:rlmD "23S rRNA (uracil(1939)-C(... 244 3.4e-20 1
TIGR_CMR|VC_2452 - symbol:VC_2452 "23S rRNA (uracil-5-)-... 244 3.4e-20 1
UNIPROTKB|O58994 - symbol:PH1259 "23S rRNA (uracil(747)-C... 241 5.4e-20 1
UNIPROTKB|P55135 - symbol:rlmD "23S rRNA m5U1939 methyltr... 239 1.1e-19 1
POMBASE|SPAC4G8.07c - symbol:SPAC4G8.07c "tRNA (m5U54) me... 236 4.5e-19 1
TIGR_CMR|CPS_4116 - symbol:CPS_4116 "23S rRNA (Uracil-5-)... 234 5.3e-19 1
UNIPROTKB|Q9KL20 - symbol:rlmC "23S rRNA (uracil(747)-C(5... 229 7.7e-19 1
TIGR_CMR|VC_A0929 - symbol:VC_A0929 "TrmA family RNA meth... 229 7.7e-19 1
TIGR_CMR|GSU_1748 - symbol:GSU_1748 "RNA methyltransferas... 208 3.1e-16 1
ASPGD|ASPL0000053706 - symbol:AN0141 species:162425 "Emer... 207 7.5e-16 1
UNIPROTKB|P75817 - symbol:rlmC "23S rRNA m5U747 methyltra... 201 1.1e-15 1
UNIPROTKB|F2Z2W7 - symbol:TRMT2A "tRNA (uracil-5-)-methyl... 206 1.2e-15 1
UNIPROTKB|Q9UZK1 - symbol:PYRAB11450 "23S rRNA (uracil(74... 178 5.1e-13 1
UNIPROTKB|P23003 - symbol:trmA "tRNA m5U54 methyltransfer... 161 2.8e-11 1
TIGR_CMR|CJE_0918 - symbol:CJE_0918 "tRNA (uracil-5-)-met... 155 1.2e-10 1
UNIPROTKB|Q8U2K7 - symbol:PF0827 "23S rRNA (uracil(747)-C... 152 7.0e-10 1
TIGR_CMR|SPO_0029 - symbol:SPO_0029 "23S rRNA (Uracil-5-)... 147 1.1e-08 1
UNIPROTKB|Q9KVJ0 - symbol:trmA "tRNA (uracil(54)-C(5))-me... 145 2.0e-08 1
TIGR_CMR|VC_0154 - symbol:VC_0154 "tRNA (uracil-5-)-methy... 145 2.0e-08 1
TIGR_CMR|CPS_0336 - symbol:CPS_0336 "tRNA (uracil-5-)-met... 138 1.9e-07 1
TIGR_CMR|SO_0206 - symbol:SO_0206 "tRNA (uracil-5-)-methy... 136 3.7e-07 1
>TAIR|locus:2094776 [details] [associations]
symbol:AT3G21300 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA;ISS]
InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01231
EMBL:CP002686 EMBL:AB023045 GO:GO:0003723 GO:GO:0006396
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
TIGRFAMs:TIGR00479 GO:GO:0008173 GO:GO:0001510 KO:K00599
InterPro:IPR002792 PROSITE:PS50926 OMA:FFQVNPV IPI:IPI00516831
RefSeq:NP_188767.2 UniGene:At.38085 ProteinModelPortal:Q9LU28
SMR:Q9LU28 STRING:Q9LU28 PRIDE:Q9LU28 EnsemblPlants:AT3G21300.1
GeneID:821684 KEGG:ath:AT3G21300 TAIR:At3g21300 PhylomeDB:Q9LU28
ProtClustDB:CLSN2680853 Genevestigator:Q9LU28 Uniprot:Q9LU28
Length = 554
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 178/208 (85%), Positives = 194/208 (93%)
Query: 15 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDL 74
E+EYTLYGK ITE LRGLTFQISANSFFQTNTHQAEVLYKLIE+ AGL+ DGSE+VLDL
Sbjct: 347 EKEYTLYGKDTITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEESAGLKGDGSEVVLDL 406
Query: 75 FCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA 134
FCGTGTIGLTLAR KHVYGYEVVPQAI+DA +NA++N I NATF+QGDLNKIG DFGN
Sbjct: 407 FCGTGTIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGIENATFIQGDLNKIGEDFGNN 466
Query: 135 FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKG 194
FPKPDIVISDPNRPGMHMKLIKFLLKLK+PRI+YVSCNPATCARDLDYLCHGV ++N+KG
Sbjct: 467 FPKPDIVISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDLDYLCHGVEEKNLKG 526
Query: 195 CYKLKSLQPVDMFPHTPHIECVCLLELS 222
CYKL S+QPVDMFPHTPHIECVCLLEL+
Sbjct: 527 CYKLMSVQPVDMFPHTPHIECVCLLELA 554
>TIGR_CMR|BA_0333 [details] [associations]
symbol:BA_0333 "RNA methyltransferase, TrmA family"
species:198094 "Bacillus anthracis str. Ames" [GO:0008175 "tRNA
methyltransferase activity" evidence=ISS] [GO:0009451 "RNA
modification" evidence=ISS] InterPro:IPR001566 InterPro:IPR003402
InterPro:IPR010280 Pfam:PF02475 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051539 GO:GO:0003723 GO:GO:0006396
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 TIGRFAMs:TIGR00479 GO:GO:0008173 GO:GO:0001510
InterPro:IPR002792 PROSITE:PS50926 Pfam:PF01938
HOGENOM:HOG000029867 KO:K03215 OMA:FFQVNPV ProtClustDB:CLSK872793
RefSeq:NP_842880.1 RefSeq:YP_016949.1 RefSeq:YP_026598.1
ProteinModelPortal:Q81ZD6 IntAct:Q81ZD6 DNASU:1086870
EnsemblBacteria:EBBACT00000008764 EnsemblBacteria:EBBACT00000018128
EnsemblBacteria:EBBACT00000020474 GeneID:1086870 GeneID:2816104
GeneID:2852228 KEGG:ban:BA_0333 KEGG:bar:GBAA_0333 KEGG:bat:BAS0318
BioCyc:BANT260799:GJAJ-360-MONOMER
BioCyc:BANT261594:GJ7F-370-MONOMER Uniprot:Q81ZD6
Length = 458
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 91/202 (45%), Positives = 120/202 (59%)
Query: 20 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79
LYG I + + + F ISA SF+Q N Q +VLY + A L DG+E V+D +CG G
Sbjct: 266 LYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEYAKL--DGNETVIDAYCGIG 323
Query: 80 TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD 139
+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F G+ + + D
Sbjct: 324 SISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYKEGVIAD 383
Query: 140 IVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLK 199
++ DP R G L+ ++ +K R+VYVSCNPAT ARDL L G G YK +
Sbjct: 384 TMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEG-G-------YKTQ 435
Query: 200 SLQPVDMFPHTPHIECVCLLEL 221
+Q VDMFPHT H+ECV L+L
Sbjct: 436 EVQLVDMFPHTTHVECVAWLKL 457
>UNIPROTKB|O31503 [details] [associations]
symbol:rlmCD "23S rRNA (uracil-C(5))-methyltransferase
RlmCD" species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0031167 "rRNA methylation" evidence=IDA] [GO:0070041 "rRNA
(uridine-C5-)-methyltransferase activity" evidence=IDA]
InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539 GO:GO:0003723
EMBL:AL009126 GenomeReviews:AL009126_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG2265 GO:GO:0070041
TIGRFAMs:TIGR00479 InterPro:IPR002792 PROSITE:PS50926 Pfam:PF01938
PIR:E69793 RefSeq:NP_388555.1 ProteinModelPortal:O31503 SMR:O31503
EnsemblBacteria:EBBACT00000001048 GeneID:936060 KEGG:bsu:BSU06730
PATRIC:18972992 GenoList:BSU06730 HOGENOM:HOG000029867 KO:K03215
OMA:FFQVNPV ProtClustDB:CLSK872793 BioCyc:BSUB:BSU06730-MONOMER
Uniprot:O31503
Length = 459
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 87/206 (42%), Positives = 121/206 (58%)
Query: 16 EEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLF 75
E ++G+ I + + + F ISA SF+Q N Q +VLY + A L+ G E V+D +
Sbjct: 262 ETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEYAELQ--GEETVIDAY 319
Query: 76 CGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF 135
CG GTI L LA+ K VYG E+VP+AI DA RNA+LN +NA F G+ + +
Sbjct: 320 CGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGNTNAEFAVGEAETVIPKWYEEG 379
Query: 136 PKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGC 195
D ++ DP R G L++ ++++K R+VYVSCNP T ARDL L G G
Sbjct: 380 ITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDLRVLEDG-G------- 431
Query: 196 YKLKSLQPVDMFPHTPHIECVCLLEL 221
Y + +QPVDMFPHT H+EC L++L
Sbjct: 432 YVTREVQPVDMFPHTNHVECCVLIKL 457
>TIGR_CMR|BA_0426 [details] [associations]
symbol:BA_0426 "RNA methyltransferase, TrmA family"
species:198094 "Bacillus anthracis str. Ames" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0008175 "tRNA methyltransferase
activity" evidence=ISS] InterPro:IPR001566 InterPro:IPR010280
Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0051539
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG2265 TIGRFAMs:TIGR00479 OMA:YPAQLRF
GO:GO:0008173 GO:GO:0001510 KO:K00599 InterPro:IPR002792
PROSITE:PS50926 Pfam:PF01938 HOGENOM:HOG000029867
RefSeq:NP_842968.1 RefSeq:YP_017052.1 RefSeq:YP_026694.1
ProteinModelPortal:Q81Z48 DNASU:1087369
EnsemblBacteria:EBBACT00000008947 EnsemblBacteria:EBBACT00000018008
EnsemblBacteria:EBBACT00000024397 GeneID:1087369 GeneID:2819883
GeneID:2849334 KEGG:ban:BA_0426 KEGG:bar:GBAA_0426 KEGG:bat:BAS0414
ProtClustDB:CLSK886880 BioCyc:BANT260799:GJAJ-456-MONOMER
BioCyc:BANT261594:GJ7F-464-MONOMER Uniprot:Q81Z48
Length = 459
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 84/207 (40%), Positives = 125/207 (60%)
Query: 15 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDL 74
++ + L GK I ETL L+F++SA +FFQ N Q VLY + A L G+E ++D
Sbjct: 263 DKTFKLAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALT--GNEKIVDA 320
Query: 75 FCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA 134
+CG GTIGL LA V G +V+P+AI+DA +NAK + +N + G + +
Sbjct: 321 YCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVKE 380
Query: 135 FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKG 194
+PD+++ DP R G KL++ +LK+K ++VYVSCNP++ ARD+ L +K
Sbjct: 381 GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQAL--------MKS 432
Query: 195 CYKLKSLQPVDMFPHTPHIECVCLLEL 221
Y+++ +QPVDMFPHT H+E V L L
Sbjct: 433 -YEVEYVQPVDMFPHTAHVENVVKLTL 458
>TIGR_CMR|GSU_1452 [details] [associations]
symbol:GSU_1452 "RNA methyltransferase, TrmA family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0008175 "tRNA methyltransferase activity"
evidence=ISS] InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539
GO:GO:0003723 GO:GO:0006396 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 TIGRFAMs:TIGR00479 GO:GO:0008173 GO:GO:0001510
InterPro:IPR002792 PROSITE:PS50926 HOGENOM:HOG000029867 KO:K03215
OMA:FFQVNPV RefSeq:NP_952503.1 ProteinModelPortal:Q74D67
GeneID:2687765 KEGG:gsu:GSU1452 PATRIC:22025747
ProtClustDB:CLSK2391137 BioCyc:GSUL243231:GH27-1431-MONOMER
Uniprot:Q74D67
Length = 495
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 83/205 (40%), Positives = 116/205 (56%)
Query: 15 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDL 74
+ +Y L + +TE L G+ F IS SFFQ N+ A ++Y+ + + L G E V+DL
Sbjct: 270 QRDYFLTRQHALTEELGGIRFTISPRSFFQVNSGGARIIYETVRQWSSLT--GKESVVDL 327
Query: 75 FCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA 134
+CG G I L LA + V+G EVV A++DA NA+LN I N +F GD ++ +
Sbjct: 328 YCGIGGIALFLAGTAREVHGIEVVEAAVNDAESNARLNRIHNCSFEAGDAAELIEELVEE 387
Query: 135 FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKG 194
+ D+V+ +P R G ++ + RIVYVSC PAT ARDLD L G+G
Sbjct: 388 GERLDLVVLNPPRKGCDAGVLNKVAAAGPARIVYVSCAPATLARDLDILA-GLG------ 440
Query: 195 CYKLKSLQPVDMFPHTPHIECVCLL 219
Y +QPVDMFP TPH+E + LL
Sbjct: 441 -YATLRVQPVDMFPQTPHVENIALL 464
>UNIPROTKB|Q8IZ69 [details] [associations]
symbol:TRMT2A "tRNA (uracil-5-)-methyltransferase homolog
A" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR010280 InterPro:IPR012677 Pfam:PF05958 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 EMBL:CH471176 eggNOG:COG2265 GO:GO:0008173 KO:K15332
GO:GO:0001510 EMBL:AC006547 UniGene:Hs.713579 EMBL:CR456354
EMBL:AK025106 EMBL:AK057029 EMBL:BC013352 EMBL:BC017184
EMBL:BC108251 IPI:IPI00337307 IPI:IPI00472176 RefSeq:NP_001244923.1
RefSeq:NP_073564.3 RefSeq:NP_892029.2 ProteinModelPortal:Q8IZ69
SMR:Q8IZ69 IntAct:Q8IZ69 STRING:Q8IZ69 PhosphoSite:Q8IZ69
DMDM:51316479 PaxDb:Q8IZ69 PRIDE:Q8IZ69 DNASU:27037
Ensembl:ENST00000252136 Ensembl:ENST00000403707
Ensembl:ENST00000404751 GeneID:27037 KEGG:hsa:27037 UCSC:uc002zrk.1
CTD:27037 GeneCards:GC22M020099 HGNC:HGNC:24974 HPA:HPA001077
MIM:611151 neXtProt:NX_Q8IZ69 PharmGKB:PA164726751
HOGENOM:HOG000232103 HOVERGEN:HBG052043 OrthoDB:EOG4RNB84
PhylomeDB:Q8IZ69 ChiTaRS:TRMT2A GenomeRNAi:27037 NextBio:49598
ArrayExpress:Q8IZ69 Bgee:Q8IZ69 CleanEx:HS_TRMT2A
Genevestigator:Q8IZ69 GermOnline:ENSG00000099899 Uniprot:Q8IZ69
Length = 625
Score = 354 (129.7 bits), Expect = 9.9e-32, P = 9.9e-32
Identities = 88/202 (43%), Positives = 117/202 (57%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G I E L GLTF+IS ++FFQ NT AEVLY +I+D A L D GS +VLD+ CGTGTI
Sbjct: 389 GDRCIHEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQDWAQL-DAGS-MVLDVCCGTGTI 446
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
GL LAR VK V G E+ P+A+ DA NA+ N +SN F G + + +V
Sbjct: 447 GLALARKVKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPTLVSRLASQHLV 506
Query: 142 -ISDPNRPGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC-YKL 198
I DP R G+H K+I + + K R++YVSCNP + LC ++ +KG ++
Sbjct: 507 AILDPPRAGLHSKVILAIRRAKNLRRLLYVSCNPRAAMGNFVDLCRAPSNR-VKGIPFRP 565
Query: 199 KSLQPVDMFPHTPHIECVCLLE 220
VD+FP TPH E + L E
Sbjct: 566 VKAVAVDLFPQTPHCEMLILFE 587
>UNIPROTKB|F1M569 [details] [associations]
symbol:Trmt2a "Protein Trmt2a" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] InterPro:IPR000504 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF05958 PROSITE:PS50102 SMART:SM00360
RGD:1310418 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 IPI:IPI00776864
Ensembl:ENSRNOT00000002580 ArrayExpress:F1M569 Uniprot:F1M569
Length = 614
Score = 342 (125.4 bits), Expect = 1.9e-30, P = 1.9e-30
Identities = 84/203 (41%), Positives = 115/203 (56%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G I E L GLTF+IS ++FFQ NT AEVLY +I++ A L DG VLD+ CGTGTI
Sbjct: 379 GDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQEWAQL--DGGSTVLDVCCGTGTI 436
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
GL LA VK V G E+ +A+ DA NA N +SN F G + + +V
Sbjct: 437 GLALAPKVKKVIGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPGLVSKLSSQQLV 496
Query: 142 -ISDPNRPGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC--YK 197
+ DP R G+H K+I + K + R++YVSCNP + LC ++ +KG +
Sbjct: 497 AVLDPPRAGLHSKVILAMRKAENIKRLLYVSCNPRAAMGNFVDLCRAPSNR-VKGTPFHP 555
Query: 198 LKSLQPVDMFPHTPHIECVCLLE 220
+K++ VD+FP TPH E + L E
Sbjct: 556 VKAVA-VDLFPQTPHCEMLILFE 577
>RGD|1310418 [details] [associations]
symbol:Trmt2a "tRNA methyltransferase 2 homolog A (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR010280 InterPro:IPR012677
Pfam:PF05958 PROSITE:PS50102 SMART:SM00360 RGD:1310418
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006396
eggNOG:COG2265 GO:GO:0008173 KO:K15332 GO:GO:0001510 EMBL:CH473999
CTD:27037 HOGENOM:HOG000232103 HOVERGEN:HBG052043 OrthoDB:EOG4RNB84
GeneTree:ENSGT00530000063723 EMBL:BC083619 IPI:IPI00391873
RefSeq:NP_001011895.1 UniGene:Rn.60258 Ensembl:ENSRNOT00000046183
GeneID:287953 KEGG:rno:287953 NextBio:627290 Genevestigator:Q5XIQ6
Uniprot:Q5XIQ6
Length = 615
Score = 342 (125.4 bits), Expect = 1.9e-30, P = 1.9e-30
Identities = 84/203 (41%), Positives = 115/203 (56%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G I E L GLTF+IS ++FFQ NT AEVLY +I++ A L DG VLD+ CGTGTI
Sbjct: 380 GDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQEWAQL--DGGSTVLDVCCGTGTI 437
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
GL LA VK V G E+ +A+ DA NA N +SN F G + + +V
Sbjct: 438 GLALAPKVKKVIGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPGLVSKLSSQQLV 497
Query: 142 -ISDPNRPGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC--YK 197
+ DP R G+H K+I + K + R++YVSCNP + LC ++ +KG +
Sbjct: 498 AVLDPPRAGLHSKVILAMRKAENIKRLLYVSCNPRAAMGNFVDLCRAPSNR-VKGTPFHP 556
Query: 198 LKSLQPVDMFPHTPHIECVCLLE 220
+K++ VD+FP TPH E + L E
Sbjct: 557 VKAVA-VDLFPQTPHCEMLILFE 578
>UNIPROTKB|D4A993 [details] [associations]
symbol:Trmt2a "Protein Trmt2a" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] InterPro:IPR000504 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF05958 PROSITE:PS50102 SMART:SM00360
RGD:1310418 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510 IPI:IPI00952015
Ensembl:ENSRNOT00000068114 ArrayExpress:D4A993 Uniprot:D4A993
Length = 627
Score = 342 (125.4 bits), Expect = 2.1e-30, P = 2.1e-30
Identities = 84/203 (41%), Positives = 115/203 (56%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G I E L GLTF+IS ++FFQ NT AEVLY +I++ A L DG VLD+ CGTGTI
Sbjct: 380 GDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQEWAQL--DGGSTVLDVCCGTGTI 437
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
GL LA VK V G E+ +A+ DA NA N +SN F G + + +V
Sbjct: 438 GLALAPKVKKVIGIELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPGLVSKLSSQQLV 497
Query: 142 -ISDPNRPGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC--YK 197
+ DP R G+H K+I + K + R++YVSCNP + LC ++ +KG +
Sbjct: 498 AVLDPPRAGLHSKVILAMRKAENIKRLLYVSCNPRAAMGNFVDLCRAPSNR-VKGTPFHP 556
Query: 198 LKSLQPVDMFPHTPHIECVCLLE 220
+K++ VD+FP TPH E + L E
Sbjct: 557 VKAVA-VDLFPQTPHCEMLILFE 578
>ZFIN|ZDB-GENE-030131-6876 [details] [associations]
symbol:trmt2a "trm2 tRNA methyltransferase 2
homolog A (S. cerevisiae)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016740
"transferase activity" evidence=IEA] [GO:0032259 "methylation"
evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] InterPro:IPR000504 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF00076 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6876
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006396
GO:GO:0008173 KO:K15332 GO:GO:0001510 CTD:27037 HOVERGEN:HBG052043
EMBL:BC045367 IPI:IPI00639711 RefSeq:NP_956223.1 UniGene:Dr.75151
ProteinModelPortal:Q7ZVY1 GeneID:334936 KEGG:dre:334936
InParanoid:Q7ZVY1 NextBio:20810602 ArrayExpress:Q7ZVY1
Uniprot:Q7ZVY1
Length = 619
Score = 339 (124.4 bits), Expect = 4.2e-30, P = 4.2e-30
Identities = 80/202 (39%), Positives = 114/202 (56%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G+ I E L GL F+IS +SFFQTNT AE+LY + + A L D + VLD+ CGTGTI
Sbjct: 411 GEEWIHEELLGLKFRISPHSFFQTNTPAAEILYSAVGEWAQLDQDST--VLDVCCGTGTI 468
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
G++LA+ VK V G E+ +A+ DA NAK N ++N F G + NA P++
Sbjct: 469 GISLAKRVKKVIGIELCQEAVKDAEANAKANGLTNVEFHCGKAEDVFPTILNAVVSPNVT 528
Query: 142 -ISDPNRPGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC-YKL 198
I DP R G+H K+I + K + R+VYV+CN + LC ++ ++G ++
Sbjct: 529 AIVDPPRAGLHSKVILAIRKAEHLKRLVYVACNAKAAMNNFIDLCRAPSNR-VRGAAFRP 587
Query: 199 KSLQPVDMFPHTPHIECVCLLE 220
VD+FP T H E + L E
Sbjct: 588 VKAMAVDLFPQTMHCETILLFE 609
>UNIPROTKB|E1BRR1 [details] [associations]
symbol:LOC100858909 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR010280
Pfam:PF05958 GO:GO:0005739 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 GeneTree:ENSGT00530000063723 InterPro:IPR025823
OMA:STMTRCS PROSITE:PS51621 EMBL:AADN02013219 IPI:IPI00584445
Ensembl:ENSGALT00000008098 Uniprot:E1BRR1
Length = 471
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 79/206 (38%), Positives = 122/206 (59%)
Query: 20 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79
L+G+ +I E + L F+IS ++FFQ NT AEVLY+++ + + + G ++LD+ CGTG
Sbjct: 266 LHGEPHIFEDVLDLRFRISPDAFFQVNTSGAEVLYRVVRELS--QAAGDTVLLDVCCGTG 323
Query: 80 TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFP--K 137
TIGL+LAR V V G E+V +AI DA NA N ISN F G + +++ +
Sbjct: 324 TIGLSLARHVSKVIGVEIVQKAIEDARWNAAFNGISNCEFHSGKAEAVIPALLSSWEDAR 383
Query: 138 PDIVISDPNRPGMHMKLIKFLLKLKA-PRIVYVSCNP-ATCARD-LDYLCHGVGDQNIKG 194
P + + +P+R G+H +++K + +A R++Y+SC P R+ L+ C + ++G
Sbjct: 384 PLVAVVNPSRAGIHHRVVKAIRSCRAIRRLLYISCKPEGEAMRNFLELCCPPDPRKKLEG 443
Query: 195 CYKLKSLQ-PVDMFPHTPHIECVCLL 219
+L PVDMFPHT H E V LL
Sbjct: 444 EPFAPALAVPVDMFPHTAHCELVLLL 469
>UNIPROTKB|F1P0L5 [details] [associations]
symbol:TRMT2A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] InterPro:IPR000504 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF05958 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 GeneTree:ENSGT00530000063723
OMA:YFHPQKL EMBL:AADN02034792 IPI:IPI00591239
ProteinModelPortal:F1P0L5 Ensembl:ENSGALT00000003266 Uniprot:F1P0L5
Length = 615
Score = 334 (122.6 bits), Expect = 1.4e-29, P = 1.4e-29
Identities = 79/202 (39%), Positives = 113/202 (55%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G I E L GL F+IS ++FFQ NT AEVLY I + A L + + VLD+ CGTGTI
Sbjct: 360 GDKYIYEELLGLKFRISPHAFFQVNTQAAEVLYAAIREWAQLSQEST--VLDICCGTGTI 417
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF-PKPDI 140
G++LA+ VK V G E+ +A+ DA NA++N +SN F G I N P+ I
Sbjct: 418 GISLAKKVKKVIGIELCQEAVQDAKANAQINELSNIEFHCGKAEDIVPSLINILAPQNLI 477
Query: 141 VISDPNRPGMHMKLIKFLLKLKA-PRIVYVSCNPATCARDLDYLCHGVGDQNIKGC-YKL 198
I DP R G+H ++I + + + +++YVSCNP + LC ++ +KG ++
Sbjct: 478 TIVDPPRAGLHSRVILAIRRAEQLKKLIYVSCNPRAAMNNFVDLCRAPSNR-VKGAAFRP 536
Query: 199 KSLQPVDMFPHTPHIECVCLLE 220
VD+FP T H E + L E
Sbjct: 537 VKAMAVDLFPQTKHCELLILFE 558
>UNIPROTKB|F1PQ26 [details] [associations]
symbol:TRMT2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR010280 InterPro:IPR012677 Pfam:PF05958 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 GO:GO:0008173 GO:GO:0001510
GeneTree:ENSGT00530000063723 OMA:YFHPQKL EMBL:AAEX03014849
Ensembl:ENSCAFT00000022517 Uniprot:F1PQ26
Length = 626
Score = 334 (122.6 bits), Expect = 1.5e-29, P = 1.5e-29
Identities = 85/202 (42%), Positives = 114/202 (56%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G I E L GLTF+IS ++FFQ NT AEVLY +I+D A L D GS VLD+ CGTGTI
Sbjct: 389 GDRCIHEDLLGLTFRISPHAFFQVNTLAAEVLYTVIQDWAQL-DTGST-VLDVCCGTGTI 446
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
GL LA VK V G E+ +A+ DA NA+ N +SN F G + + +V
Sbjct: 447 GLALAPRVKRVVGIELCQEAVEDARVNARDNELSNVEFHCGRAEDLVPALVSRLASQQLV 506
Query: 142 -ISDPNRPGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC-YKL 198
I DP R G+H K+I + + + R++YVSCNP + LC ++ +KG ++
Sbjct: 507 AILDPPRAGLHSKVILAVRRAENLKRLLYVSCNPRAAMGNFVDLCRAPSNR-VKGVPFRP 565
Query: 199 KSLQPVDMFPHTPHIECVCLLE 220
VD+FP TPH E + L E
Sbjct: 566 VKAVAVDLFPQTPHCEMLILFE 587
>UNIPROTKB|F1RHM9 [details] [associations]
symbol:TRMT2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR010280 InterPro:IPR012677
Pfam:PF05958 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 GeneTree:ENSGT00530000063723
OMA:YFHPQKL EMBL:CT737345 UniGene:Ssc.15617
Ensembl:ENSSSCT00000011097 Uniprot:F1RHM9
Length = 620
Score = 333 (122.3 bits), Expect = 1.9e-29, P = 1.9e-29
Identities = 85/202 (42%), Positives = 114/202 (56%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G I E L GLTF+IS ++FFQ NT AEVLY +I+D A L D GS VLD+ CGTGTI
Sbjct: 384 GDQCIYEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQDWAQL-DTGST-VLDVCCGTGTI 441
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
GL LAR VK V G E+ +A+ DA NA N +SN F G + + +V
Sbjct: 442 GLALARKVKRVVGVELSQEAVDDARVNALDNELSNVEFHCGRAEDLVPPLVSRLASQQLV 501
Query: 142 -ISDPNRPGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC-YKL 198
I DP R G+H K+I + + + R++YVSC+P + LC ++ +KG ++
Sbjct: 502 AILDPPRAGLHSKVILAVRRAENLRRLLYVSCSPRAAMGNFVDLCRAPSNR-VKGMPFRP 560
Query: 199 KSLQPVDMFPHTPHIECVCLLE 220
VD+FP TPH E + L E
Sbjct: 561 VKAVAVDLFPQTPHCEMLILFE 582
>ZFIN|ZDB-GENE-050809-101 [details] [associations]
symbol:trmt2b "TRM2 tRNA methyltransferase 2
homolog B (S. cerevisiae)" species:7955 "Danio rerio" [GO:0008173
"RNA methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0032259 "methylation" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] InterPro:IPR010280 Pfam:PF05958
ZFIN:ZDB-GENE-050809-101 eggNOG:COG2265 GO:GO:0030697 GO:GO:0001510
HOGENOM:HOG000232103 GeneTree:ENSGT00530000063723 EMBL:AL929344
EMBL:BC139682 IPI:IPI00512387 RefSeq:NP_001116415.1
UniGene:Dr.51718 ProteinModelPortal:A4QP75
Ensembl:ENSDART00000041702 Ensembl:ENSDART00000143745 GeneID:606657
KEGG:dre:606657 CTD:79979 HOVERGEN:HBG108599 InParanoid:A4QP75
KO:K15331 OrthoDB:EOG4T1HMF NextBio:20892508 Bgee:A4QP75
InterPro:IPR025823 Uniprot:A4QP75
Length = 480
Score = 325 (119.5 bits), Expect = 3.1e-29, P = 3.1e-29
Identities = 77/213 (36%), Positives = 118/213 (55%)
Query: 15 EEEYTL-YGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLD 73
+ +Y L YG+++I E + G F+IS +SFFQ N AE LYK + + + G+ +LD
Sbjct: 269 QSQYQLLYGQTHIYEEVLGFKFRISPDSFFQVNREAAEALYKTVAELSQPCVGGT--LLD 326
Query: 74 LFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN 133
+ CGTG IG++L+ ++ V G E++ QA+ DA NA LN + N F+ G + D
Sbjct: 327 VCCGTGAIGISLSPQMERVIGIELIEQAVEDAKFNAALNRVCNCEFLAGKAEVVLPDLMG 386
Query: 134 AFPKPD--IVISDPNRPGMHMKLIKFLLKLKA-PRIVYVSCNP-ATCARDLDYLCHGVG- 188
+ + +P+R G+H ++++ L A R+VY+SC P R+ LC VG
Sbjct: 387 SLSSDGGLTAVVNPSRAGLHYRVVRALRNHSAIRRLVYISCKPDGEAMRNFRELCCSVGL 446
Query: 189 DQNIKG-CYKLKSLQPVDMFPHTPHIECVCLLE 220
+ I G +K PVD+FPHTPH E V + E
Sbjct: 447 VRRITGEAFKPVVAVPVDLFPHTPHCELVLVFE 479
>UNIPROTKB|E1BMX2 [details] [associations]
symbol:TRMT2A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR010280 InterPro:IPR012677
Pfam:PF05958 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006396
GO:GO:0008173 GO:GO:0001510 GeneTree:ENSGT00530000063723
OMA:YFHPQKL EMBL:DAAA02045786 EMBL:DAAA02045787 IPI:IPI00694530
ProteinModelPortal:E1BMX2 Ensembl:ENSBTAT00000026476 Uniprot:E1BMX2
Length = 591
Score = 326 (119.8 bits), Expect = 9.4e-29, P = 9.4e-29
Identities = 84/202 (41%), Positives = 113/202 (55%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G I E + GLTF+IS ++FFQ NT AEVLY LI+D A L D GS VLD+ CGTGTI
Sbjct: 355 GDRCIREDVLGLTFRISPHAFFQVNTAAAEVLYTLIQDWAQL-DAGST-VLDVCCGTGTI 412
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
GL LAR VK V G E+ +A+ DA NA N +SN F G ++ + +V
Sbjct: 413 GLALARKVKRVVGVELSQEAVEDARVNALDNELSNVEFHCGRAEELVPALVSRLASQQLV 472
Query: 142 -ISDPNRPGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC-YKL 198
I DP R G+H K + + + + R++YVSCNP + LC ++ +KG ++
Sbjct: 473 AILDPPRAGLHSKAVLAVRRAENVRRLLYVSCNPRAAMGNFVDLCRAPSNR-VKGTPFRP 531
Query: 199 KSLQPVDMFPHTPHIECVCLLE 220
VD+FP T H E + L E
Sbjct: 532 VKAVAVDLFPQTLHCEMLILFE 553
>FB|FBgn0036838 [details] [associations]
symbol:CG3808 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR010280 InterPro:IPR012677 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 GO:GO:0008173
GO:GO:0001510 EMBL:AY061614 ProteinModelPortal:Q95R49 SMR:Q95R49
PRIDE:Q95R49 FlyBase:FBgn0036838 InParanoid:Q95R49
OrthoDB:EOG470RZC ArrayExpress:Q95R49 Bgee:Q95R49 Uniprot:Q95R49
Length = 615
Score = 320 (117.7 bits), Expect = 4.9e-28, P = 4.9e-28
Identities = 90/210 (42%), Positives = 116/210 (55%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLY-KLIEDCAGLRDDGSEIVLDLFCGTGT 80
G ++IT+T++GL F+IS +FFQ NT A VLY K I+ A +D +LD+ CGTGT
Sbjct: 372 GSTHITDTIQGLQFRISPLAFFQINTEGANVLYQKAIDLVAPTKDT---TMLDICCGTGT 428
Query: 81 IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK-IGGDFGNAF---- 135
I L A+ K V G E+VP AI DA NA+ N I NA F G+ + I A
Sbjct: 429 ITLAFAKHCKKVMGVEIVPDAIKDAEFNAEANGIKNAKFFTGNADDFIKSMVREALYDQE 488
Query: 136 P-KP-DIV-ISDPNRPGMHMKLIKFLLKLKA-PRIVYVSCNPATCARDLDYLCHGVGDQN 191
P KP D++ + DP R G+H + I + A R+VYVSCNP + R+ L Q
Sbjct: 489 PGKPLDLIAVVDPPRAGLHHRSIAAIRSADAINRLVYVSCNPHSAKRNFIELARPESKQ- 547
Query: 192 IKG-CYKLKSLQPVDMFPHTPHIECVCLLE 220
KG + KS VDMFPHT H E V L E
Sbjct: 548 YKGEPFYPKSAVAVDMFPHTMHTELVILFE 577
>MGI|MGI:2442530 [details] [associations]
symbol:Trmt2b "TRM2 tRNA methyltransferase 2B" species:10090
"Mus musculus" [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008168 "methyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0030697 "S-adenosylmethionine-dependent tRNA
(m5U54) methyltransferase activity" evidence=IEA] [GO:0032259
"methylation" evidence=IEA] MGI:MGI:2442530 GO:GO:0005739
InterPro:IPR025714 Pfam:PF13847 EMBL:AL672215 eggNOG:COG2265
GO:GO:0030697 HOGENOM:HOG000232103 GeneTree:ENSGT00530000063723
CTD:79979 HOVERGEN:HBG108599 KO:K15331 OrthoDB:EOG4T1HMF
InterPro:IPR025823 EMBL:AK028999 EMBL:AK049523 EMBL:BC056937
IPI:IPI00453580 RefSeq:NP_001161466.1 RefSeq:NP_766128.2
UniGene:Mm.289368 ProteinModelPortal:Q8BQJ6 SMR:Q8BQJ6
PhosphoSite:Q8BQJ6 PRIDE:Q8BQJ6 Ensembl:ENSMUST00000087541
Ensembl:ENSMUST00000113252 GeneID:215201 KEGG:mmu:215201
UCSC:uc009ufq.2 InParanoid:Q8BQJ6 NextBio:374634 Bgee:Q8BQJ6
Genevestigator:Q8BQJ6 Uniprot:Q8BQJ6
Length = 493
Score = 305 (112.4 bits), Expect = 8.4e-27, P = 8.4e-27
Identities = 71/205 (34%), Positives = 112/205 (54%)
Query: 20 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79
L+G+ +I E L GL +IS ++FFQ NT AE+LY++I + +G+ + ++LD+ CGTG
Sbjct: 288 LFGEPHIFEDLLGLKIRISPDAFFQINTAGAEMLYRIIGELSGVNSES--LLLDICCGTG 345
Query: 80 TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF--GNAFPK 137
IGL++A+ V+G E+V QA+ DA A N ++N F G I K
Sbjct: 346 VIGLSVAQRASQVHGIELVEQAVEDARWTAAFNGVTNCEFHAGRAETILPQLLKSQKDEK 405
Query: 138 PDIVISDPNRPGMHMKLIKFLLKLKAPR-IVYVSCNP-ATCARDLDYLC--HGVGDQNIK 193
+ + +P R G+H ++++ + + +V+VSC P R+ LC Q +
Sbjct: 406 LTVAVVNPARAGLHYRVVRAIRNCRTIHTLVFVSCKPHGESTRNFIELCCPPNSAKQLLG 465
Query: 194 GCYKLKSLQPVDMFPHTPHIECVCL 218
+ L+ PVD+FPHTPH E V L
Sbjct: 466 DPFVLREAVPVDLFPHTPHCELVLL 490
>DICTYBASE|DDB_G0293244 [details] [associations]
symbol:DDB_G0293244 "tRNA
(uracil-5-)-methyltransferase" species:44689 "Dictyostelium
discoideum" [GO:0008173 "RNA methyltransferase activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0001510 "RNA methylation" evidence=IEA] InterPro:IPR010280
Pfam:PF05958 PROSITE:PS01230 dictyBase:DDB_G0293244
EMBL:AAFI02000200 GO:GO:0006396 eggNOG:COG2265 GO:GO:0008173
KO:K15332 GO:GO:0001510 OMA:YFHPQKL RefSeq:XP_629224.1
ProteinModelPortal:Q54C42 EnsemblProtists:DDB0191845 GeneID:8629106
KEGG:ddi:DDB_G0293244 InParanoid:Q54C42 Uniprot:Q54C42
Length = 646
Score = 308 (113.5 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 81/213 (38%), Positives = 114/213 (53%)
Query: 19 TLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGT 78
T+ G I E L G F++SAN+FFQ NT E+LY + D A + D + +LD+ CGT
Sbjct: 381 TIDGPEFIHENLLGCQFRVSANAFFQINTKATELLYSKVLDWAQVSQDTT--LLDICCGT 438
Query: 79 GTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD--------LNKIGGD 130
GTIG +++ VK V G E+ P A+ D+ NAKLN I NA ++ G L K G
Sbjct: 439 GTIGQCISKKVKKVIGLEISPDAVIDSINNAKLNKIDNAEYLVGKAEDTLPTLLTKSNGG 498
Query: 131 FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKA-PRIVYVSCNPATCARDLDYLCHGVGD 189
F I I DP R G+H ++K + + ++VYVSCN + D LC G+
Sbjct: 499 KDQEF----IGIVDPPRGGLHGDVLKAIRTFEPIKKLVYVSCNQNSLIPDAAKLCKGIS- 553
Query: 190 QNIKGC--YKLKSLQPVDMFPHTPHIECVCLLE 220
+ +KG K++ D+FPHT +E V L E
Sbjct: 554 KTMKGTPFVPTKAIA-FDLFPHTDLVELVVLFE 585
>TAIR|locus:2056553 [details] [associations]
symbol:AT2G28450 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008173 "RNA methyltransferase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000741
"karyogamy" evidence=RCA] [GO:0006606 "protein import into nucleus"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR000571 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF00642 Pfam:PF05958 PROSITE:PS50103
SMART:SM00356 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0006396 InterPro:IPR025714 Pfam:PF13847 EMBL:AC006283
eggNOG:COG2265 GO:GO:0008173 EMBL:AY128289 EMBL:BT002293
IPI:IPI00526347 PIR:A84685 RefSeq:NP_180412.2 UniGene:At.44990
UniGene:At.66390 ProteinModelPortal:Q8L7S3 SMR:Q8L7S3 IntAct:Q8L7S3
PaxDb:Q8L7S3 PRIDE:Q8L7S3 EnsemblPlants:AT2G28450.1 GeneID:817393
KEGG:ath:AT2G28450 TAIR:At2g28450 HOGENOM:HOG000030531
InParanoid:Q8L7S3 KO:K15332 OMA:AHRVGMV PhylomeDB:Q8L7S3
ProtClustDB:CLSN2918116 Genevestigator:Q8L7S3 GO:GO:0001510
Uniprot:Q8L7S3
Length = 809
Score = 199 (75.1 bits), Expect = 4.3e-26, Sum P(3) = 4.3e-26
Identities = 46/106 (43%), Positives = 62/106 (58%)
Query: 15 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDL 74
E+ + ++ I + + L F IS +FFQ NT AE LY + D A L D ++ D+
Sbjct: 507 EQTTNVLTEARIHDHINNLRFSISPTAFFQVNTVTAEKLYSIAGDWADLGPD--TLLFDV 564
Query: 75 FCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
CGTGTIGLTLA V V G E+ A++DA RNA +N ISN F+
Sbjct: 565 CCGTGTIGLTLAHRVGMVIGIEMNASAVADAERNATINGISNCKFI 610
Score = 90 (36.7 bits), Expect = 4.3e-26, Sum P(3) = 4.3e-26
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 140 IVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKG 194
+ I DP R G+H +IK L + R+VY+SCNP T + LC D+ +G
Sbjct: 700 VAIVDPPRSGLHPAVIKALRTHPRLKRLVYISCNPETLVANAIELCTPSFDEPDRG 755
Score = 64 (27.6 bits), Expect = 4.3e-26, Sum P(3) = 4.3e-26
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 204 VDMFPHTPHIECVCLLE 220
VD+FPHT H E V LLE
Sbjct: 792 VDLFPHTDHCEMVMLLE 808
>UNIPROTKB|Q96GJ1 [details] [associations]
symbol:TRMT2B "tRNA (uracil(54)-C(5))-methyltransferase
homolog" species:9606 "Homo sapiens" [GO:0030697
"S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
GO:GO:0005739 InterPro:IPR025714 Pfam:PF13847 EMBL:Z97985
eggNOG:COG2265 EMBL:CH471115 GO:GO:0030697 EMBL:AL109952 CTD:79979
HOVERGEN:HBG108599 KO:K15331 InterPro:IPR025823 EMBL:AK022749
EMBL:AL832849 EMBL:AL133275 EMBL:BC007526 EMBL:BC008067
EMBL:BC009437 EMBL:BC020116 EMBL:BC034272 IPI:IPI00550091
IPI:IPI00747797 IPI:IPI00749054 RefSeq:NP_001161442.1
RefSeq:NP_001161443.1 RefSeq:NP_001161444.1 RefSeq:NP_079193.2
UniGene:Hs.496501 ProteinModelPortal:Q96GJ1 SMR:Q96GJ1
PhosphoSite:Q96GJ1 DMDM:74762656 PRIDE:Q96GJ1
Ensembl:ENST00000338687 Ensembl:ENST00000372935
Ensembl:ENST00000372936 Ensembl:ENST00000372939
Ensembl:ENST00000545398 GeneID:79979 KEGG:hsa:79979 UCSC:uc004egq.3
UCSC:uc004egv.3 GeneCards:GC0XM100264 H-InvDB:HIX0016920
H-InvDB:HIX0029044 HGNC:HGNC:25748 HPA:HPA035120 neXtProt:NX_Q96GJ1
PharmGKB:PA164726782 InParanoid:Q96GJ1 OMA:STMTRCS PhylomeDB:Q96GJ1
ChiTaRS:TRMT2B GenomeRNAi:79979 NextBio:70009 ArrayExpress:Q96GJ1
Bgee:Q96GJ1 CleanEx:HS_TRMT2B Genevestigator:Q96GJ1 Uniprot:Q96GJ1
Length = 504
Score = 297 (109.6 bits), Expect = 7.5e-26, P = 7.5e-26
Identities = 77/205 (37%), Positives = 113/205 (55%)
Query: 20 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79
L+G+ I E L L +IS ++FFQ NT AE+LY+ + + G+ D I+LD+ CGTG
Sbjct: 299 LFGEPYIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVNSD--TILLDICCGTG 356
Query: 80 TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI-GGDFGNAFPKP 138
IGL+LA+ V G E++ QA+ DA A N I+N+ F G KI G +
Sbjct: 357 VIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKEDGQ 416
Query: 139 DIV-ISDPNRPGMHMKLIKFLLKLKAPR-IVYVSCN-PATCARDLDYLCHGVGD-QNIKG 194
IV + +P R G+H K+I+ + +A +V+VSC R++ LC + + G
Sbjct: 417 SIVAVVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLG 476
Query: 195 -CYKLKSLQPVDMFPHTPHIECVCL 218
+ L+ PVD+FPHTPH E V L
Sbjct: 477 EPFVLQQAVPVDLFPHTPHCELVLL 501
>UNIPROTKB|O58864 [details] [associations]
symbol:PH1137 "tRNA (uracil(54)-C(5))-methyltransferase"
species:70601 "Pyrococcus horikoshii OT3" [GO:0030488 "tRNA
methylation" evidence=ISS] [GO:0030697
"S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase
activity" evidence=ISS] InterPro:IPR001566 InterPro:IPR010280
Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872
GO:GO:0051539 GO:GO:0003723 EMBL:BA000001 GenomeReviews:BA000001_GR
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG2265
HOGENOM:HOG000029870 ProtClustDB:CLSK253194 TIGRFAMs:TIGR00479
GO:GO:0030697 PIR:C71055 RefSeq:NP_143040.1
ProteinModelPortal:O58864 SMR:O58864
EnsemblBacteria:EBPYRT00000000785 GeneID:1443456 KEGG:pho:PH1137
OMA:LNGLNNC BioCyc:PHOR70601:GJWR-1127-MONOMER Uniprot:O58864
Length = 407
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 82/204 (40%), Positives = 113/204 (55%)
Query: 16 EEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLF 75
E +++G+ ITE L + + I NSFFQTN++QA L K + + +G E VLD++
Sbjct: 225 EVESVWGREFITEKLDDVIYLIHPNSFFQTNSYQAVNLVKKVSELV----EG-ERVLDMY 279
Query: 76 CGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF 135
G GT G+ LA+ V G++ AI A +NAK+N + +A F ++ N F
Sbjct: 280 SGVGTFGIYLAKRGFKVVGFDSNEFAIEMARKNAKINKV-DAVFDVATDREVEV---NGF 335
Query: 136 PKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGC 195
D VI DP R G+H KLIK L + K IVYVSCNP T ARD++ L
Sbjct: 336 ---DTVIVDPPRVGLHPKLIKKLNREKPEVIVYVSCNPKTFARDIEKLE----------- 381
Query: 196 YKLKSLQPVDMFPHTPHIECVCLL 219
YK+ + +DMFPHTPH+E V L
Sbjct: 382 YKIDEIVALDMFPHTPHLELVAKL 405
>TIGR_CMR|CHY_1112 [details] [associations]
symbol:CHY_1112 "23S rRNA (uracil-5-)-methyltransferase
RumA" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0008649 "rRNA
methyltransferase activity" evidence=ISS] InterPro:IPR001566
InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0006396
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 TIGRFAMs:TIGR00479 GO:GO:0008173 GO:GO:0001510
InterPro:IPR002792 PROSITE:PS50926 Pfam:PF01938
HOGENOM:HOG000029867 KO:K03215 OMA:FFQVNPV RefSeq:YP_359958.1
ProteinModelPortal:Q3AD26 STRING:Q3AD26 GeneID:3727523
KEGG:chy:CHY_1112 PATRIC:21275362 ProtClustDB:CLSK2396891
BioCyc:CHYD246194:GJCN-1111-MONOMER Uniprot:Q3AD26
Length = 441
Score = 290 (107.1 bits), Expect = 1.9e-25, P = 1.9e-25
Identities = 75/201 (37%), Positives = 111/201 (55%)
Query: 21 YGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGT 80
+G ITE L G++++++ SFFQ N QAE +Y++ D L +++V D + G G+
Sbjct: 250 FGTRYITEELLGISYRLTPLSFFQINPVQAEKIYRIALDYLDLGK--TDMVFDGYSGVGS 307
Query: 81 IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN-KIGGDFGNAFPKPD 139
+ L AR V G E + A+ A NAKLN I+N F G + K+ +
Sbjct: 308 LTLPAARIAASVVGVEEIRDAVEVAKTNAKLNGIANVNFFAGKVEEKLPWLLKKGYRFNK 367
Query: 140 IVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLK 199
I++ DP R G+ ++++ ++KL RIVYVSCNPAT ARDL L G Y ++
Sbjct: 368 IIL-DPPREGVKKEVLEEIIKLNPERIVYVSCNPATQARDLKILAE-------TGYYPVE 419
Query: 200 SLQPVDMFPHTPHIECVCLLE 220
+ PVDMF T H+E V LL+
Sbjct: 420 -ITPVDMFSQTMHVENVVLLK 439
>MGI|MGI:96270 [details] [associations]
symbol:Trmt2a "TRM2 tRNA methyltransferase 2A" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0032259 "methylation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:96270
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 InterPro:IPR025714
Pfam:PF13847 eggNOG:COG2265 KO:K15332 CTD:27037
HOGENOM:HOG000232103 HOVERGEN:HBG052043 OrthoDB:EOG4RNB84
ChiTaRS:TRMT2A EMBL:X56044 EMBL:X05830 EMBL:AK080170 EMBL:BC046976
IPI:IPI00403912 PIR:S01176 RefSeq:NP_001074468.1
RefSeq:NP_001074469.1 RefSeq:NP_001182134.1 UniGene:Mm.271798
ProteinModelPortal:Q8BNV1 SMR:Q8BNV1 PhosphoSite:Q8BNV1
PaxDb:Q8BNV1 PRIDE:Q8BNV1 Ensembl:ENSMUST00000140206 GeneID:15547
KEGG:mmu:15547 UCSC:uc007ync.2 GeneTree:ENSGT00530000063723
NextBio:288470 Bgee:Q8BNV1 Genevestigator:Q8BNV1
GermOnline:ENSMUSG00000022721 Uniprot:Q8BNV1
Length = 574
Score = 214 (80.4 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 49/92 (53%), Positives = 60/92 (65%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G I E L GLTF+IS ++FFQ NT AEVLY +I++ A L DG VLD+ CGTGTI
Sbjct: 379 GDQCIQEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQEWAQL--DGGSTVLDVCCGTGTI 436
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNN 113
GL LA VK V G E+ +A+ DA NA N+
Sbjct: 437 GLALAPKVKRVVGIELCQEAVEDARMNALTND 468
Score = 98 (39.6 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 165 RIVYVSCNPATCARDLDYLCHGVGDQNIKGC--YKLKSLQPVDMFPHTPHIECVCLLE 220
R++YVSCNP + LC ++ +KG + +K++ VD+FP TPH E + L E
Sbjct: 483 RLLYVSCNPRAAMGNFVDLCRAPSNR-VKGTPFHPVKAVA-VDLFPQTPHCEMLILFE 538
>UNIPROTKB|Q8U1N4 [details] [associations]
symbol:PF1172 "tRNA (uracil(54)-C(5))-methyltransferase"
species:186497 "Pyrococcus furiosus DSM 3638" [GO:0030488 "tRNA
methylation" evidence=ISS] [GO:0030697
"S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase
activity" evidence=ISS] InterPro:IPR001566 InterPro:IPR010280
Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872
GO:GO:0051539 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
eggNOG:COG2265 HOGENOM:HOG000029870 ProtClustDB:CLSK253194
TIGRFAMs:TIGR00479 EMBL:AE009950 GenomeReviews:AE009950_GR
OMA:YPAQLRF GO:GO:0030697 RefSeq:NP_578901.1
ProteinModelPortal:Q8U1N4 SMR:Q8U1N4 PRIDE:Q8U1N4 DNASU:1469041
EnsemblBacteria:EBPYRT00000004407 GeneID:1469041 KEGG:pfu:PF1172
Uniprot:Q8U1N4
Length = 411
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 80/201 (39%), Positives = 110/201 (54%)
Query: 16 EEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLF 75
E+Y +GK I E L G+ + I NSFFQTN++QA L K +E +G ++V D++
Sbjct: 228 EKY--WGKEFIMEELDGVKYLIHPNSFFQTNSYQAVNLVKTVEKFV----EGEKVV-DMY 280
Query: 76 CGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF 135
G GT G+ LA+ V G++ AI A +NA++NN+ FV D ++ D F
Sbjct: 281 SGVGTFGVYLAKKGMKVVGFDSNAFAIEMANKNAEINNVEAEFFVASD-REV--DI-KGF 336
Query: 136 PKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGC 195
D VI DP R G+H KL+K L IVYVSCNP T +++ L N
Sbjct: 337 ---DTVIVDPPRAGLHPKLVKRLNDHGPETIVYVSCNPKTFKVNIEQL------NN---- 383
Query: 196 YKLKSLQPVDMFPHTPHIECV 216
Y ++ L +DMFPHTPHIE V
Sbjct: 384 YIIEELIALDMFPHTPHIELV 404
>UNIPROTKB|Q9UZR7 [details] [associations]
symbol:PYRAB10780 "tRNA
(uracil(54)-C(5))-methyltransferase" species:272844 "Pyrococcus
abyssi GE5" [GO:0030488 "tRNA methylation" evidence=IDA]
[GO:0030697 "S-adenosylmethionine-dependent tRNA (m5U54)
methyltransferase activity" evidence=IDA] InterPro:IPR001566
InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
GO:GO:0046872 GO:GO:0051539 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 EMBL:AJ248286 EMBL:HE613800
GenomeReviews:AL096836_GR eggNOG:COG2265 HOGENOM:HOG000029870
ProtClustDB:CLSK253194 InterPro:IPR015985 Pfam:PF03848
TIGRFAMs:TIGR00479 PIR:H75085 RefSeq:NP_126758.1 PDB:2JJQ PDB:2VS1
PDBsum:2JJQ PDBsum:2VS1 ProteinModelPortal:Q9UZR7 SMR:Q9UZR7
EnsemblBacteria:EBPYRT00000003914 GeneID:1496434 KEGG:pab:PAB0719
OMA:YPAQLRF EvolutionaryTrace:Q9UZR7 GO:GO:0030697 Uniprot:Q9UZR7
Length = 405
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 76/199 (38%), Positives = 110/199 (55%)
Query: 21 YGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGT 80
+GK I E L + + I NSFFQTN++QA L + + + +G +I LD++ G GT
Sbjct: 229 WGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELV----EGEKI-LDMYSGVGT 283
Query: 81 IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDI 140
G+ LA+ +V G++ AI A RN ++NN+ +A F ++ D + D
Sbjct: 284 FGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV-DAEF------EVASDREVSVKGFDT 336
Query: 141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKS 200
VI DP R G+H +L+K L + K IVYVSCNP T ARD+ L D Y++
Sbjct: 337 VIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML-----D------YRIDE 385
Query: 201 LQPVDMFPHTPHIECVCLL 219
+ +DMFPHTPH+E V L
Sbjct: 386 IVALDMFPHTPHVELVAKL 404
>TIGR_CMR|SO_3456 [details] [associations]
symbol:SO_3456 "RNA methyltransferase, TrmA family"
species:211586 "Shewanella oneidensis MR-1" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01010 InterPro:IPR001566
InterPro:IPR010280 PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872
GO:GO:0051539 GO:GO:0003723 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR025714 Pfam:PF13847 eggNOG:COG2265 TIGRFAMs:TIGR00479
GO:GO:0006364 GO:GO:0008173 GO:GO:0001510 InterPro:IPR002792
PROSITE:PS50926 Pfam:PF01938 KO:K03215 HOGENOM:HOG000029868
ProtClustDB:PRK13168 RefSeq:NP_719005.1 ProteinModelPortal:Q8EBQ3
GeneID:1171132 KEGG:son:SO_3456 PATRIC:23526608 OMA:YSPNRRT
Uniprot:Q8EBQ3
Length = 449
Score = 272 (100.8 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 76/192 (39%), Positives = 100/192 (52%)
Query: 33 LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHV 92
LTF + +F Q N + + D L E +LDLFCG G L LAR V
Sbjct: 273 LTF--TPGNFVQVNAQINKAMVAQALDW--LAPQPGERILDLFCGMGNFSLPLARMGADV 328
Query: 93 YGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA--FPKPDIVISDPNRPGM 150
G E VP+ +S A NA N +SN TF GDL+ D + K D ++ DP R G
Sbjct: 329 IGVEGVPEMVSQARENAVANGLSNLTFYHGDLS---ADLSSEPWMGKIDKLLLDPARAGA 385
Query: 151 HMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHT 210
+ L ++L K+K ++VYVSCNPA+ ARD L +G YKL+ L +DMFP T
Sbjct: 386 YESL-QWLKKMKPRQVVYVSCNPASLARDSAVLLE-------RG-YKLQKLGLIDMFPQT 436
Query: 211 PHIECVCLLELS 222
HIE + L EL+
Sbjct: 437 HHIEAMALFELA 448
>UNIPROTKB|F1S1L6 [details] [associations]
symbol:LOC100517798 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005739 "mitochondrion" evidence=IEA]
GO:GO:0005739 InterPro:IPR025714 Pfam:PF13847
GeneTree:ENSGT00530000063723 InterPro:IPR025823 OMA:STMTRCS
EMBL:FP015837 Ensembl:ENSSSCT00000013656 PROSITE:PS51621
Uniprot:F1S1L6
Length = 496
Score = 266 (98.7 bits), Expect = 1.9e-22, P = 1.9e-22
Identities = 69/200 (34%), Positives = 109/200 (54%)
Query: 20 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79
L+G+ +I E L GL +IS ++FFQ NT AE+LY+ + + +G+ D I+LD+ CGTG
Sbjct: 295 LFGEPHIFEDLLGLKIRISPDAFFQINTAGAEMLYRTVGELSGVNSD--TILLDICCGTG 352
Query: 80 TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD 139
IGL+LA++ V G E+V QA+ DA A N I+N F G KI +
Sbjct: 353 VIGLSLAQYTSQVLGIELVEQAVEDARWTAAFNGITNCEFHTGRAEKILPQLLKSKEDGQ 412
Query: 140 IVIS--DPNRPGMHMKLIKFLLKLKAPR-IVYVSCNPATCARDLDYLCHGVGDQNIKGCY 196
+++ +P R G+H ++++ + +A R +V+VSC P HG +NI
Sbjct: 413 FIVAVVNPARAGLHYQVVQAIRNCRAIRTLVFVSCKP-----------HGETTRNI---I 458
Query: 197 KLKSLQPVDMFPHTPHIECV 216
+L+S P+ PH H+ +
Sbjct: 459 ELRST-PLFAKPHLTHLTLI 477
>SGD|S000001764 [details] [associations]
symbol:TRM2 "tRNA methyltransferase" species:4932
"Saccharomyces cerevisiae" [GO:0030697
"S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase
activity" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0032259 "methylation"
evidence=IEA] [GO:0001510 "RNA methylation" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008173 "RNA
methyltransferase activity" evidence=IEA] [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=IDA] [GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IGI;IMP] [GO:0006302 "double-strand break repair"
evidence=IGI;IMP] [GO:0030696 "tRNA (m5U54) methyltransferase
activity" evidence=IMP;IDA] [GO:0006400 "tRNA modification"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR010280 InterPro:IPR025795 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 SGD:S000001764 EMBL:BK006944 GO:GO:0006302
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 GO:GO:0030697 InterPro:IPR002792 PROSITE:PS50926
Pfam:PF01938 GO:GO:0000014 GO:GO:0051908 EMBL:Z25734 EMBL:Z14126
GeneTree:ENSGT00530000063723 KO:K15331 EMBL:AJ250970 EMBL:Z28281
EMBL:AY260897 PIR:S37744 RefSeq:NP_012982.2
ProteinModelPortal:P33753 SMR:P33753 MINT:MINT-2781813
STRING:P33753 PaxDb:P33753 PeptideAtlas:P33753 EnsemblFungi:YKR056W
GeneID:853930 KEGG:sce:YKR056W CYGD:YKR056w HOGENOM:HOG000029869
OMA:YGYRTKL OrthoDB:EOG4HHS9R NextBio:975297 Genevestigator:P33753
GermOnline:YKR056W GO:GO:0030696 Uniprot:P33753
Length = 639
Score = 262 (97.3 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 58/199 (29%), Positives = 100/199 (50%)
Query: 26 ITETLRGLTFQISANSFFQTNTHQAEVLYKLIED---CAGLRDDG-SEIVLDLFCGTGTI 81
+TE + G TF SA FFQ N ++ K + D DD ++ ++D +CG+G
Sbjct: 443 VTEYVDGYTFNFSAGEFFQNNNSILPIVTKYVRDNLQAPAKGDDNKTKFLVDAYCGSGLF 502
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
+ ++ V V G E+ ++S A +NAK N + N F+ G K+ ++
Sbjct: 503 SICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFIVGKAEKLFESIDTPSENTSVI 562
Query: 142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSL 201
+ DP R G +K L +I+Y+SCN + ARD++Y +N ++++S+
Sbjct: 563 L-DPPRKGCDELFLKQLAAYNPAKIIYISCNVHSQARDVEYFLKET--EN-GSAHQIESI 618
Query: 202 QPVDMFPHTPHIECVCLLE 220
+ D FP T H+E VC+++
Sbjct: 619 RGFDFFPQTHHVESVCIMK 637
>CGD|CAL0004099 [details] [associations]
symbol:TRM2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006400
"tRNA modification" evidence=IEA] [GO:0051908 "double-stranded DNA
specific 5'-3' exodeoxyribonuclease activity" evidence=IEA]
[GO:0030696 "tRNA (m5U54) methyltransferase activity" evidence=IEA]
[GO:0000014 "single-stranded DNA specific endodeoxyribonuclease
activity" evidence=IEA] InterPro:IPR010280 InterPro:IPR025795
Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231 PROSITE:PS51622
CGD:CAL0004099 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:AACQ01000045 EMBL:AACQ01000042 SUPFAM:SSF50249 eggNOG:COG2265
GO:GO:0030697 GO:GO:0001510 InterPro:IPR002792 PROSITE:PS50926
Pfam:PF01938 KO:K15331 RefSeq:XP_718150.1 RefSeq:XP_718419.1
ProteinModelPortal:Q5A908 STRING:Q5A908 GeneID:3639959
GeneID:3640235 KEGG:cal:CaO19.10837 KEGG:cal:CaO19.3327
Uniprot:Q5A908
Length = 551
Score = 259 (96.2 bits), Expect = 1.6e-21, P = 1.6e-21
Identities = 59/196 (30%), Positives = 96/196 (48%)
Query: 26 ITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTL 85
+ E + G F+ SA FFQ N ++ + L +D ++D +CG+G +T
Sbjct: 356 VQEYINGYIFEFSAGEFFQNNNSILPIVIDYVRSNLSLSEDQPNYLVDAYCGSGLFSITC 415
Query: 86 ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145
+ V V G E+ +I A RNA+ NNI NA F+ G +I + +++ DP
Sbjct: 416 SSNVSKVIGVEISADSIRFAKRNAEKNNIKNANFIVGKAEEIFASIDTPNNQTSVIL-DP 474
Query: 146 NRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVD 205
R G + L +IVY+SCN + ARD+++ + + N Y ++S++ D
Sbjct: 475 PRKGCDDVFLNQLSDYNPAKIVYISCNVHSQARDIEWFINSTVNGNQ---YYVESIKGFD 531
Query: 206 MFPHTPHIECVCLLEL 221
FP T H+E V +L L
Sbjct: 532 FFPQTHHVETVAVLSL 547
>CGD|CAL0001075 [details] [associations]
symbol:orf19.4365 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008033 "tRNA processing"
evidence=IEA] InterPro:IPR010280 InterPro:IPR025795 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 PROSITE:PS51622 CGD:CAL0001075
Gene3D:2.40.50.140 InterPro:IPR012340 GO:GO:0030697 GO:GO:0001510
EMBL:AACQ01000090 RefSeq:XP_715141.1 ProteinModelPortal:Q5A075
GeneID:3643219 KEGG:cal:CaO19.4365 Uniprot:Q5A075
Length = 588
Score = 258 (95.9 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 70/207 (33%), Positives = 102/207 (49%)
Query: 23 KSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIG 82
K ITE + FQ +N FFQ N + I D + ++D +CG G G
Sbjct: 382 KKVITEKVEDFLFQYDSNCFFQNNNAILPSVLDYIRYHINQSDKTIDNLIDTYCGVGFFG 441
Query: 83 LTLARWVKH---VYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKI--GGDFGNA- 134
+ L++ V+G E+V QAI A NAKLN + FV GD + I +F +
Sbjct: 442 IALSKSFNENTKVFGIELVEQAIKYANHNAKLNGLDPERVQFVSGDASNIFNNENFKKSG 501
Query: 135 -FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIK 193
K +VI DP+R G + ++ LL + +VYVSCN + ARDL + + N+K
Sbjct: 502 ISGKNSVVIVDPSRKGSNESFLQQLLDFEPEIVVYVSCNVFSQARDLATFENLQQNTNVK 561
Query: 194 GCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+K + D FP T H+E + +LE
Sbjct: 562 --YKVKDVMGFDFFPQTKHVESIAILE 586
>UNIPROTKB|Q5A075 [details] [associations]
symbol:TRM22 "Potential tRNA (Uracil-5-)-methyltransferase"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR010280
InterPro:IPR025795 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
PROSITE:PS51622 CGD:CAL0001075 Gene3D:2.40.50.140
InterPro:IPR012340 GO:GO:0030697 GO:GO:0001510 EMBL:AACQ01000090
RefSeq:XP_715141.1 ProteinModelPortal:Q5A075 GeneID:3643219
KEGG:cal:CaO19.4365 Uniprot:Q5A075
Length = 588
Score = 258 (95.9 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 70/207 (33%), Positives = 102/207 (49%)
Query: 23 KSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIG 82
K ITE + FQ +N FFQ N + I D + ++D +CG G G
Sbjct: 382 KKVITEKVEDFLFQYDSNCFFQNNNAILPSVLDYIRYHINQSDKTIDNLIDTYCGVGFFG 441
Query: 83 LTLARWVKH---VYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKI--GGDFGNA- 134
+ L++ V+G E+V QAI A NAKLN + FV GD + I +F +
Sbjct: 442 IALSKSFNENTKVFGIELVEQAIKYANHNAKLNGLDPERVQFVSGDASNIFNNENFKKSG 501
Query: 135 -FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIK 193
K +VI DP+R G + ++ LL + +VYVSCN + ARDL + + N+K
Sbjct: 502 ISGKNSVVIVDPSRKGSNESFLQQLLDFEPEIVVYVSCNVFSQARDLATFENLQQNTNVK 561
Query: 194 GCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+K + D FP T H+E + +LE
Sbjct: 562 --YKVKDVMGFDFFPQTKHVESIAILE 586
>GENEDB_PFALCIPARUM|PF11_0348 [details] [associations]
symbol:PF11_0348 "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
GO:GO:0030697 GO:GO:0001510 EMBL:AE014186 RefSeq:XP_001348019.2
ProteinModelPortal:Q8II27 EnsemblProtists:PF11_0348:mRNA
GeneID:810895 KEGG:pfa:PF11_0348 EuPathDB:PlasmoDB:PF3D7_1133800
HOGENOM:HOG000282436 ProtClustDB:CLSZ2432401 Uniprot:Q8II27
Length = 857
Score = 257 (95.5 bits), Expect = 6.6e-21, P = 6.6e-21
Identities = 63/205 (30%), Positives = 106/205 (51%)
Query: 20 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79
L+G + ET+ F ++ + FFQ N ++LYK + D +++ + DL CGTG
Sbjct: 652 LWGMEYLEETILDNKFLLTPSCFFQVNRDSCQILYKRVIDYINIKEGIKNYIFDLCCGTG 711
Query: 80 TIGLTLARWVK----HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI-GGDFGNA 134
TI + + +K H+ G ++ +I A +NAK+NNI+N F+ G + + + N
Sbjct: 712 TISICASNVLKSNDVHIIGIDICESSIISANKNAKMNNINNYKFLHGRVEEFFQKEIKNI 771
Query: 135 FPK-PDIV-ISDPNRPGMHMKLIKFLLKLKA-PRIVYVSCNPATCARDLDYLCHGVGDQN 191
+I+ I DP R G+ ++ L +I+YVSCNP T ++ +
Sbjct: 772 QTNNANIICIVDPPRNGLANSVLNILSAHHLINQIIYVSCNPITLINNVTNILF------ 825
Query: 192 IKGCYKLKSLQPVDMFPHTPHIECV 216
+ K+K++ VDMFPHT H+EC+
Sbjct: 826 LNETLKIKNMAFVDMFPHTFHLECI 850
>UNIPROTKB|Q8II27 [details] [associations]
symbol:PF11_0348 "RNA (Uracil-5-)methyltransferase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
GO:GO:0030697 GO:GO:0001510 EMBL:AE014186 RefSeq:XP_001348019.2
ProteinModelPortal:Q8II27 EnsemblProtists:PF11_0348:mRNA
GeneID:810895 KEGG:pfa:PF11_0348 EuPathDB:PlasmoDB:PF3D7_1133800
HOGENOM:HOG000282436 ProtClustDB:CLSZ2432401 Uniprot:Q8II27
Length = 857
Score = 257 (95.5 bits), Expect = 6.6e-21, P = 6.6e-21
Identities = 63/205 (30%), Positives = 106/205 (51%)
Query: 20 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79
L+G + ET+ F ++ + FFQ N ++LYK + D +++ + DL CGTG
Sbjct: 652 LWGMEYLEETILDNKFLLTPSCFFQVNRDSCQILYKRVIDYINIKEGIKNYIFDLCCGTG 711
Query: 80 TIGLTLARWVK----HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI-GGDFGNA 134
TI + + +K H+ G ++ +I A +NAK+NNI+N F+ G + + + N
Sbjct: 712 TISICASNVLKSNDVHIIGIDICESSIISANKNAKMNNINNYKFLHGRVEEFFQKEIKNI 771
Query: 135 FPK-PDIV-ISDPNRPGMHMKLIKFLLKLKA-PRIVYVSCNPATCARDLDYLCHGVGDQN 191
+I+ I DP R G+ ++ L +I+YVSCNP T ++ +
Sbjct: 772 QTNNANIICIVDPPRNGLANSVLNILSAHHLINQIIYVSCNPITLINNVTNILF------ 825
Query: 192 IKGCYKLKSLQPVDMFPHTPHIECV 216
+ K+K++ VDMFPHT H+EC+
Sbjct: 826 LNETLKIKNMAFVDMFPHTFHLECI 850
>TIGR_CMR|DET_1065 [details] [associations]
symbol:DET_1065 "RNA methyltransferase, TrmA family"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0006396 EMBL:CP000027
GenomeReviews:CP000027_GR Gene3D:2.40.50.140 InterPro:IPR012340
eggNOG:COG2265 HOGENOM:HOG000029870 GO:GO:0008173 GO:GO:0001510
KO:K00599 RefSeq:YP_181780.1 ProteinModelPortal:Q3Z7L9
STRING:Q3Z7L9 GeneID:3229662 KEGG:det:DET1065 PATRIC:21609175
OMA:CANSRIV ProtClustDB:CLSK837125
BioCyc:DETH243164:GJNF-1066-MONOMER Uniprot:Q3Z7L9
Length = 395
Score = 246 (91.7 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 67/198 (33%), Positives = 96/198 (48%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G+ + L G F ISA SFFQ N QAE + LI+ L G E ++D + G GT
Sbjct: 207 GQKEYHDLLLGHDFCISAASFFQVNNPQAEKMAGLIKKHLNL--SGGETLVDAYAGVGTF 264
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
+ L+ V E AI DA N + I N +Q + F D +
Sbjct: 265 AVLLSPDCNRVIAIEESAAAIKDARLN--IAGIDNIELIQSKTEDVISQFQGQM---DAL 319
Query: 142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSL 201
I DP+R G H ++ + + +VYV+C+P++ ARDL L + G ++L +
Sbjct: 320 ILDPSRSGAHPSVLASICQNPPRNLVYVACDPSSLARDLKIL--------LGGPFELSQV 371
Query: 202 QPVDMFPHTPHIECVCLL 219
PVDMFP T H+E VCL+
Sbjct: 372 IPVDMFPQTYHVETVCLM 389
>WB|WBGene00019241 [details] [associations]
symbol:H24K24.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008173 "RNA methyltransferase
activity" evidence=IEA] InterPro:IPR000504 InterPro:IPR010280
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS01231 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006396 EMBL:FO081563 InterPro:IPR025714 Pfam:PF13847
eggNOG:COG2265 GO:GO:0008173 KO:K15332 GO:GO:0001510
GeneTree:ENSGT00530000063723 OMA:YFHPQKL RefSeq:NP_503353.2
ProteinModelPortal:Q9N5L0 SMR:Q9N5L0 PaxDb:Q9N5L0
EnsemblMetazoa:H24K24.4.1 EnsemblMetazoa:H24K24.4.2 GeneID:186775
KEGG:cel:CELE_H24K24.4 UCSC:H24K24.4 CTD:186775 WormBase:H24K24.4
HOGENOM:HOG000153284 InParanoid:Q9N5L0 NextBio:932950
Uniprot:Q9N5L0
Length = 603
Score = 198 (74.8 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 54/176 (30%), Positives = 87/176 (49%)
Query: 59 DCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKH-----VYGYEVVPQAISDACRNAKLNN 113
D A +D I+LD+ CGTGTIG L + ++ G E++ +A+ DA +NAK N
Sbjct: 427 DEAPAPEDPGTILLDICCGTGTIGQCLLKNIQKSQKVCCIGIEMIAEAVEDAKQNAKQNK 486
Query: 114 ISNAT-FVQGD----LNKIGGDFGNAFP--KPDIV-ISDPNRPGMHMKLIKFLLKLKAPR 165
+ ++ G + N F K +V + DP R GMH K+I +++ R
Sbjct: 487 METCCKYIAGKAEDTFRSMRYHLPNGFDLRKSRVVGVLDPPRAGMHEKVILACREMETMR 546
Query: 166 -IVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+++VSC P ++ LC + + + +QPVDMFP T H+E + L+
Sbjct: 547 RLIFVSCEPNAAISNIVNLCRPSSRKYTGDAFSVTRVQPVDMFPQTNHMEWIIQLD 602
Score = 78 (32.5 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRD 65
G I E+L F++S +FFQTN+ A VLY I + GL +
Sbjct: 333 GTPYIYESLLDCRFRVSPPAFFQTNSQAAAVLYSTIGEHCGLSE 376
>TIGR_CMR|SO_0980 [details] [associations]
symbol:SO_0980 "RNA methyltransferase, TrmA family"
species:211586 "Shewanella oneidensis MR-1" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0008173 "RNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01012 InterPro:IPR001566
InterPro:IPR010280 InterPro:IPR011825 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539 GO:GO:0003723
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG2265
TIGRFAMs:TIGR00479 GO:GO:0001510 HOGENOM:HOG000218547 KO:K03212
OMA:QPQHAAI ProtClustDB:PRK03522 GO:GO:0016436 TIGRFAMs:TIGR02085
RefSeq:NP_716609.2 ProteinModelPortal:Q8EI67 GeneID:1168823
KEGG:son:SO_0980 PATRIC:23521611 Uniprot:Q8EI67
Length = 386
Score = 243 (90.6 bits), Expect = 2.2e-20, P = 2.2e-20
Identities = 72/207 (34%), Positives = 104/207 (50%)
Query: 15 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDL 74
+EE L + + E + I SFFQTN H A LY+ + G + + + DL
Sbjct: 190 DEEIFLTENTRLEERFNDVPLFIRPKSFFQTNPHVAAKLYQTAREWVG--EFAPKSLWDL 247
Query: 75 FCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG-GDFGN 133
FCG G GL A + G E+ +AI+ A +A++ + N F+ D GD
Sbjct: 248 FCGVGGFGLHCASKDIPLTGIEIEAEAIACAKMSAQMMGLDNVQFMALDSTDFAKGDA-- 305
Query: 134 AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPR-IVYVSCNPATCARDLDYLCHGVGDQNI 192
A KPD++I +P R G+ L L + APR I+Y SCNP T A+DL H I
Sbjct: 306 AATKPDLIIVNPPRRGIGESLCDALSEF-APRAILYSSCNPKTLAKDL---VH------I 355
Query: 193 KGCYKLKSLQPVDMFPHTPHIECVCLL 219
+G Y+L +Q D+FPH+ H E + +L
Sbjct: 356 RG-YQLTRVQLFDLFPHSDHFEVLAML 381
>UNIPROTKB|Q9KPC1 [details] [associations]
symbol:rlmD "23S rRNA (uracil(1939)-C(5))-methyltransferase
RlmD" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000154 "rRNA modification" evidence=ISS] [GO:0008649 "rRNA
methyltransferase activity" evidence=ISS] HAMAP:MF_01010
InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 TIGRFAMs:TIGR00479 InterPro:IPR002792
PROSITE:PS50926 Pfam:PF01938 GO:GO:0008649 KO:K03215 OMA:HNGAGIA
ProtClustDB:PRK13168 EMBL:AF175295 PIR:A82075 RefSeq:NP_232081.1
ProteinModelPortal:Q9KPC1 DNASU:2612994 GeneID:2612994
KEGG:vch:VC2452 PATRIC:20083925 Uniprot:Q9KPC1
Length = 440
Score = 244 (91.0 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 73/191 (38%), Positives = 97/191 (50%)
Query: 28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLAR 87
ET L+F S F Q N +A + +++ L E VLDLFCG G L LA+
Sbjct: 258 ETGSRLSFLPS--HFIQVN--RAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAK 313
Query: 88 WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR 147
+ V G E V + + A NAKLN I+N F Q +L + A K V+ DP R
Sbjct: 314 QAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAKVLLDPAR 373
Query: 148 PGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMF 207
G ++ L L A R+VYVSCNPAT ARD L +G ++L+ L +DMF
Sbjct: 374 AGAE-GIVDQLSALGAKRVVYVSCNPATLARDSQSLLS-------QG-FRLEKLGMLDMF 424
Query: 208 PHTPHIECVCL 218
PHT H+E + L
Sbjct: 425 PHTSHLESMAL 435
>TIGR_CMR|VC_2452 [details] [associations]
symbol:VC_2452 "23S rRNA (uracil-5-)-methyltransferase
RumA" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000154
"rRNA modification" evidence=ISS] [GO:0008649 "rRNA
methyltransferase activity" evidence=ISS] HAMAP:MF_01010
InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0051539 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 TIGRFAMs:TIGR00479 InterPro:IPR002792
PROSITE:PS50926 Pfam:PF01938 GO:GO:0008649 KO:K03215 OMA:HNGAGIA
ProtClustDB:PRK13168 EMBL:AF175295 PIR:A82075 RefSeq:NP_232081.1
ProteinModelPortal:Q9KPC1 DNASU:2612994 GeneID:2612994
KEGG:vch:VC2452 PATRIC:20083925 Uniprot:Q9KPC1
Length = 440
Score = 244 (91.0 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 73/191 (38%), Positives = 97/191 (50%)
Query: 28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLAR 87
ET L+F S F Q N +A + +++ L E VLDLFCG G L LA+
Sbjct: 258 ETGSRLSFLPS--HFIQVN--RAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAK 313
Query: 88 WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR 147
+ V G E V + + A NAKLN I+N F Q +L + A K V+ DP R
Sbjct: 314 QAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAKVLLDPAR 373
Query: 148 PGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMF 207
G ++ L L A R+VYVSCNPAT ARD L +G ++L+ L +DMF
Sbjct: 374 AGAE-GIVDQLSALGAKRVVYVSCNPATLARDSQSLLS-------QG-FRLEKLGMLDMF 424
Query: 208 PHTPHIECVCL 218
PHT H+E + L
Sbjct: 425 PHTSHLESMAL 435
>UNIPROTKB|O58994 [details] [associations]
symbol:PH1259 "23S rRNA
(uracil(747)-C(5))-methyltransferase" species:70601 "Pyrococcus
horikoshii OT3" [GO:0031167 "rRNA methylation" evidence=ISS]
[GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity"
evidence=ISS] InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539
GO:GO:0003723 EMBL:BA000001 GenomeReviews:BA000001_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 HOGENOM:HOG000029870 OMA:GCLWQGL
ProtClustDB:CLSK253194 GO:GO:0070041 InterPro:IPR015985
Pfam:PF03848 TIGRFAMs:TIGR00479 PIR:G71070 RefSeq:NP_143152.1
ProteinModelPortal:O58994 EnsemblBacteria:EBPYRT00000001556
GeneID:1443583 KEGG:pho:PH1259 BioCyc:PHOR70601:GJWR-1256-MONOMER
Uniprot:O58994
Length = 412
Score = 241 (89.9 bits), Expect = 5.4e-20, P = 5.4e-20
Identities = 73/199 (36%), Positives = 107/199 (53%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G I E + G+T+ I + FFQTN++ +L K +E +GS+ VLDL+ G GT+
Sbjct: 233 GNEVIREKVEGITYLIHPSVFFQTNSYALPLLLKSVEKFC----EGSK-VLDLYSGIGTL 287
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141
L LA+ V G EV ++ A R+A++N+I NATF+QG + G + +
Sbjct: 288 SLYLAKRGFEVTGVEVNGTSVEMAKRSAEINSI-NATFIQGKAEDAELE-GY-----ETL 340
Query: 142 ISDPNRPGMHMKLIKFLLKLKAPR-IVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKS 200
I DP R G+ + + ++K K P ++YVSCNP LDY + + YK+
Sbjct: 341 IVDPPRKGLK-EFSRRIVK-KGPNTLIYVSCNPLRFI--LDYRNY------LSEAYKVDD 390
Query: 201 LQPVDMFPHTPHIECVCLL 219
+DMFPHTPHIE V L
Sbjct: 391 ALLIDMFPHTPHIEAVIKL 409
>UNIPROTKB|P55135 [details] [associations]
symbol:rlmD "23S rRNA m5U1939 methyltransferase"
species:83333 "Escherichia coli K-12" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0070475 "rRNA base methylation" evidence=IDA]
[GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity"
evidence=IDA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA;IDA] [GO:0046872 "metal ion binding" evidence=IEA]
HAMAP:MF_01010 InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046872
GO:GO:0051539 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG2265 GO:GO:0070041 TIGRFAMs:TIGR00479
EMBL:U29580 InterPro:IPR002792 PROSITE:PS50926 Pfam:PF01938
GO:GO:0070475 KO:K03215 HOGENOM:HOG000029868 PIR:E65060
RefSeq:NP_417265.1 RefSeq:YP_490993.1 PDB:1UWV PDB:2BH2 PDBsum:1UWV
PDBsum:2BH2 ProteinModelPortal:P55135 SMR:P55135 DIP:DIP-12119N
IntAct:P55135 PRIDE:P55135 EnsemblBacteria:EBESCT00000000123
EnsemblBacteria:EBESCT00000015733 GeneID:12933291 GeneID:947243
KEGG:ecj:Y75_p2722 KEGG:eco:b2785 PATRIC:32120986 EchoBASE:EB1228
EcoGene:EG11247 OMA:HNGAGIA ProtClustDB:PRK13168
BioCyc:EcoCyc:EG11247-MONOMER BioCyc:ECOL316407:JW2756-MONOMER
BioCyc:MetaCyc:EG11247-MONOMER EvolutionaryTrace:P55135
Genevestigator:P55135 Uniprot:P55135
Length = 433
Score = 239 (89.2 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 70/188 (37%), Positives = 92/188 (48%)
Query: 32 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRD-DGSEIVLDLFCGTGTIGLTLARWVK 90
GL S F Q N A V K++ D + VLDLFCG G L LA
Sbjct: 253 GLRLTFSPRDFIQVN---AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA 309
Query: 91 HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM 150
V G E VP + +NA+LN + N TF +L + A D V+ DP R G
Sbjct: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369
Query: 151 HMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHT 210
+++ ++KL+ RIVYVSCNPAT ARD + L +K Y + L +DMFPHT
Sbjct: 370 -AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL--------LKAGYTIARLAMLDMFPHT 420
Query: 211 PHIECVCL 218
H+E + L
Sbjct: 421 GHLESMVL 428
>POMBASE|SPAC4G8.07c [details] [associations]
symbol:SPAC4G8.07c "tRNA (m5U54) methyltransferase Trm2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0030488 "tRNA methylation" evidence=ISS] [GO:0030696 "tRNA
(m5U54) methyltransferase activity" evidence=ISS] [GO:0030697
"S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR010280 InterPro:IPR025795 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 PomBase:SPAC4G8.07c GO:GO:0005739
GO:GO:0005634 EMBL:CU329670 GO:GO:0046872 GO:GO:0051539
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 GO:GO:0030697 InterPro:IPR002792 PROSITE:PS50926
Pfam:PF01938 OMA:HNGAGIA KO:K15331 HOGENOM:HOG000029869
OrthoDB:EOG4HHS9R GO:GO:0030696 PIR:T38852 RefSeq:NP_593067.1
ProteinModelPortal:Q09833 STRING:Q09833 EnsemblFungi:SPAC4G8.07c.1
GeneID:2543535 KEGG:spo:SPAC4G8.07c NextBio:20804544 Uniprot:Q09833
Length = 527
Score = 236 (88.1 bits), Expect = 4.5e-19, P = 4.5e-19
Identities = 61/202 (30%), Positives = 92/202 (45%)
Query: 23 KSNITETLRGLTFQISANSFFQTNTHQAE-----VLYKLIEDCAGLRDDGSEIVLDLFCG 77
K + E L+F A +FFQ N E V +L+ + +D +CG
Sbjct: 326 KMIVREQFGDLSFTFPAGAFFQNNNSILEKFTSYVREQLLNPFGRKEHQRPKYFVDAYCG 385
Query: 78 TGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPK 137
+G + ++ V G E+ ++ A NAK NN+SNATF+ G KI P
Sbjct: 386 SGLFSVACSKGFLSVIGVEISADSVRYAEENAKRNNVSNATFIVGQAEKIFSSIETP-PN 444
Query: 138 PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYK 197
++ DP R G + LL+ RIVY+SCN T ARD+ +L Q YK
Sbjct: 445 ETAMVIDPPRKGCDQSFLNQLLEYSPYRIVYISCNVHTQARDVGFLL----SQEKGRSYK 500
Query: 198 LKSLQPVDMFPHTPHIECVCLL 219
+ ++ D+FP + H+E + L
Sbjct: 501 IDEIRGFDLFPQSHHVESILTL 522
>TIGR_CMR|CPS_4116 [details] [associations]
symbol:CPS_4116 "23S rRNA (Uracil-5-)-methyltransferase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006396 "RNA
processing" evidence=ISS] [GO:0008649 "rRNA methyltransferase
activity" evidence=ISS] HAMAP:MF_01010 InterPro:IPR001566
InterPro:IPR010280 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
GO:GO:0046872 GO:GO:0051539 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 eggNOG:COG2265 TIGRFAMs:TIGR00479 OMA:VECRILE
GO:GO:0006364 GO:GO:0008173 GO:GO:0001510 InterPro:IPR002792
PROSITE:PS50926 Pfam:PF01938 KO:K03215 RefSeq:YP_270771.1
ProteinModelPortal:Q47WQ1 STRING:Q47WQ1 GeneID:3519096
KEGG:cps:CPS_4116 PATRIC:21471095 HOGENOM:HOG000029868
BioCyc:CPSY167879:GI48-4129-MONOMER Uniprot:Q47WQ1
Length = 469
Score = 234 (87.4 bits), Expect = 5.3e-19, P = 5.3e-19
Identities = 67/185 (36%), Positives = 94/185 (50%)
Query: 38 SANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEV 97
S+N F Q N HQ + + A L ++ VLDLFCG G L LA+ K V G E
Sbjct: 294 SSNDFIQIN-HQVNNAM-ISQALAWLNILATDNVLDLFCGLGNFSLALAKHAKRVVGVEG 351
Query: 98 VPQAISDACRNAKLNNISNATFVQGDLNK--IGGDF--GNAFPKPDIVISDPNRPGMHMK 153
+ + A +N+ +N + N F Q DLN + + G F K V+ DP R G +
Sbjct: 352 MQTMVDKATQNSLVNGLDNCQFYQADLNSHWLLEPWVQGQVFDK---VLLDPARAGAE-Q 407
Query: 154 LIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHI 213
+ + +LK P ++YVSC+PAT ARD L KG YKL+ + +DMF T H+
Sbjct: 408 AVSQIAELKIPCVLYVSCDPATLARDSAILVS-------KG-YKLEKISLMDMFSQTKHV 459
Query: 214 ECVCL 218
E + L
Sbjct: 460 ETMIL 464
>UNIPROTKB|Q9KL20 [details] [associations]
symbol:rlmC "23S rRNA (uracil(747)-C(5))-methyltransferase
RlmC" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0009451 "RNA modification" evidence=ISS] HAMAP:MF_01012
InterPro:IPR010280 InterPro:IPR011825 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539 EMBL:AE003853
GenomeReviews:AE003853_GR eggNOG:COG2265 GO:GO:0001510 KO:K03212
OMA:QPQHAAI ProtClustDB:PRK03522 GO:GO:0016436 TIGRFAMs:TIGR02085
PIR:A82399 RefSeq:NP_233314.1 ProteinModelPortal:Q9KL20
DNASU:2612926 GeneID:2612926 KEGG:vch:VCA0929 PATRIC:20086390
Uniprot:Q9KL20
Length = 375
Score = 229 (85.7 bits), Expect = 7.7e-19, P = 7.7e-19
Identities = 69/205 (33%), Positives = 96/205 (46%)
Query: 15 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDL 74
EEE L ++ E + I SFFQTN AE LY +R+ + DL
Sbjct: 183 EEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATAR--TWVREIAPTQMWDL 240
Query: 75 FCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA 134
FCG G L A V G E+ P+AI+ A R+A++ I N +F D K +A
Sbjct: 241 FCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSA 300
Query: 135 FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKG 194
P++V+ +P R G+ +L L L I+Y SCNP T +D+ L
Sbjct: 301 ---PELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL----------S 347
Query: 195 CYKLKSLQPVDMFPHTPHIECVCLL 219
Y++ +Q DMFPHT H E + LL
Sbjct: 348 SYQMIRVQWFDMFPHTDHAEVLTLL 372
>TIGR_CMR|VC_A0929 [details] [associations]
symbol:VC_A0929 "TrmA family RNA methyltransferase,
putative" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0009451 "RNA modification" evidence=ISS] HAMAP:MF_01012
InterPro:IPR010280 InterPro:IPR011825 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539 EMBL:AE003853
GenomeReviews:AE003853_GR eggNOG:COG2265 GO:GO:0001510 KO:K03212
OMA:QPQHAAI ProtClustDB:PRK03522 GO:GO:0016436 TIGRFAMs:TIGR02085
PIR:A82399 RefSeq:NP_233314.1 ProteinModelPortal:Q9KL20
DNASU:2612926 GeneID:2612926 KEGG:vch:VCA0929 PATRIC:20086390
Uniprot:Q9KL20
Length = 375
Score = 229 (85.7 bits), Expect = 7.7e-19, P = 7.7e-19
Identities = 69/205 (33%), Positives = 96/205 (46%)
Query: 15 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDL 74
EEE L ++ E + I SFFQTN AE LY +R+ + DL
Sbjct: 183 EEEIFLTETQSLLEHFNDVPMVIRPKSFFQTNPKVAEQLYATAR--TWVREIAPTQMWDL 240
Query: 75 FCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA 134
FCG G L A V G E+ P+AI+ A R+A++ I N +F D K +A
Sbjct: 241 FCGVGGFALHCAAPDTAVTGIEIEPEAIASAQRSAQMMGIDNLSFAALDSAKFSQSQMSA 300
Query: 135 FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKG 194
P++V+ +P R G+ +L L L I+Y SCNP T +D+ L
Sbjct: 301 ---PELVLVNPPRRGLGSELTAQLEALAPKYILYSSCNPQTMVKDIAEL----------S 347
Query: 195 CYKLKSLQPVDMFPHTPHIECVCLL 219
Y++ +Q DMFPHT H E + LL
Sbjct: 348 SYQMIRVQWFDMFPHTDHAEVLTLL 372
>TIGR_CMR|GSU_1748 [details] [associations]
symbol:GSU_1748 "RNA methyltransferase, TrmA family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0001510 "RNA
methylation" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0008175 "tRNA methyltransferase activity"
evidence=ISS] InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539
GO:GO:0003723 GO:GO:0006396 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
eggNOG:COG2265 TIGRFAMs:TIGR00479 GO:GO:0008173 GO:GO:0001510
InterPro:IPR002792 PROSITE:PS50926 Pfam:PF01938 KO:K03215
HOGENOM:HOG000029868 RefSeq:NP_952798.1 ProteinModelPortal:Q74CC6
GeneID:2687018 KEGG:gsu:GSU1748 PATRIC:22026343 OMA:DIHQARI
ProtClustDB:CLSK828524 BioCyc:GSUL243231:GH27-1717-MONOMER
Uniprot:Q74CC6
Length = 438
Score = 208 (78.3 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 69/189 (36%), Positives = 82/189 (43%)
Query: 31 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK 90
R L+ F Q N Q VL AG+ G VLDLFCG G L LA
Sbjct: 258 RPLSLSFRRGGFSQVNYRQNRVLVSKALHLAGV-GPGRR-VLDLFCGNGNFSLPLASGGA 315
Query: 91 HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM 150
+ G E +I DA +NA N I + F+ D A D VI DP R G
Sbjct: 316 QLVGVEDYGPSIDDARKNADFNGIGDVEFIAIDAADGTRRLRAAGEHFDTVILDPPRTGA 375
Query: 151 HMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHT 210
+ + + L RIVYVSC+P T RDL L K Y++ VDMFP T
Sbjct: 376 RDAVGEVAI-LAPERIVYVSCDPPTLGRDLGVLR--------KAGYRVVGSHGVDMFPQT 426
Query: 211 PHIECVCLL 219
HIE V LL
Sbjct: 427 YHIESVTLL 435
>ASPGD|ASPL0000053706 [details] [associations]
symbol:AN0141 species:162425 "Emericella nidulans"
[GO:0051908 "double-stranded DNA specific 5'-3'
exodeoxyribonuclease activity" evidence=IEA] [GO:0030696 "tRNA
(m5U54) methyltransferase activity" evidence=IEA] [GO:0000014
"single-stranded DNA specific endodeoxyribonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006302 "double-strand break
repair" evidence=IEA] [GO:0006400 "tRNA modification" evidence=IEA]
InterPro:IPR010280 InterPro:IPR025795 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 PROSITE:PS51622 EMBL:BN001308 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0030697 GO:GO:0001510
HOGENOM:HOG000029869 OMA:YGYRTKL ProteinModelPortal:C8VQ78
EnsemblFungi:CADANIAT00002605 Uniprot:C8VQ78
Length = 575
Score = 207 (77.9 bits), Expect = 7.5e-16, P = 7.5e-16
Identities = 67/213 (31%), Positives = 98/213 (46%)
Query: 16 EEYTLYGKSNIT--ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA--GLRD-DGSEI 70
EE N T E + F A +FFQ N + I + A D G+ I
Sbjct: 363 EEKRCVTDQNATSVEYIDDYLFTNKAGAFFQNNNSILSGFTEYIREHALTPTSDKSGTPI 422
Query: 71 --VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
+LD + G+G +TL+ K G +V +I A NA+ NN+ N F D +
Sbjct: 423 KYLLDAYSGSGLFTITLSPLFKSSLGVDVAGDSIVSARENARANNLPNTGFAAADAAVLF 482
Query: 129 GDFGNAFPKPD--IVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
D +P PD +++ DP R G ++ LL R+VYVSCN T ARD+ + G
Sbjct: 483 KDV--PYP-PDQTLLVIDPPRKGCSEDFLRQLLAYGPRRVVYVSCNVHTQARDVAVMVQG 539
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
D+ Y ++S++ D FP T H+E V +L
Sbjct: 540 --DEKTGVRYNIESIRGFDFFPQTGHVEGVAVL 570
>UNIPROTKB|P75817 [details] [associations]
symbol:rlmC "23S rRNA m5U747 methyltransferase"
species:83333 "Escherichia coli K-12" [GO:0070475 "rRNA base
methylation" evidence=IMP] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016436 "rRNA (uridine) methyltransferase activity"
evidence=IEA;IMP] HAMAP:MF_01012 InterPro:IPR010280
InterPro:IPR011825 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0051539 eggNOG:COG2265
GO:GO:0070475 PIR:C64824 RefSeq:NP_415380.1 RefSeq:YP_489132.1
ProteinModelPortal:P75817 SMR:P75817 IntAct:P75817 PRIDE:P75817
EnsemblBacteria:EBESCT00000003640 EnsemblBacteria:EBESCT00000017223
GeneID:12930993 GeneID:947260 KEGG:ecj:Y75_p0832 KEGG:eco:b0859
PATRIC:32116923 EchoBASE:EB3201 EcoGene:EG13427
HOGENOM:HOG000218547 KO:K03212 OMA:QPQHAAI ProtClustDB:PRK03522
BioCyc:EcoCyc:G6449-MONOMER BioCyc:ECOL316407:JW0843-MONOMER
BioCyc:MetaCyc:G6449-MONOMER Genevestigator:P75817 GO:GO:0016436
TIGRFAMs:TIGR02085 Uniprot:P75817
Length = 375
Score = 201 (75.8 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 64/206 (31%), Positives = 98/206 (47%)
Query: 15 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDL 74
E E L + + E + I SFFQTN A LY D +R + + DL
Sbjct: 183 ETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVASQLYATARDW--VRQLPVKHMWDL 240
Query: 75 FCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA 134
FCG G GL A + G E+ +AI+ A ++A ++ F D + G+
Sbjct: 241 FCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAAELGLTRLQFQALDSTQFATAQGDV 300
Query: 135 FPKPDIVISDPNRPGMHMKLIKFLLKLKAPR-IVYVSCNPATCARDLDYLCHGVGDQNIK 193
P++V+ +P R G+ L +L + APR I+Y SCN T A+D+ + +
Sbjct: 301 ---PELVLVNPPRRGIGKPLCDYLSTM-APRFIIYSSCNAQTMAKDI---------RELP 347
Query: 194 GCYKLKSLQPVDMFPHTPHIECVCLL 219
G ++++ +Q DMFPHT H E + LL
Sbjct: 348 G-FRIERVQLFDMFPHTAHYEVLTLL 372
>UNIPROTKB|F2Z2W7 [details] [associations]
symbol:TRMT2A "tRNA (uracil-5-)-methyltransferase homolog
A" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025714
Pfam:PF13847 EMBL:AC006547 HGNC:HGNC:24974 ChiTaRS:TRMT2A
IPI:IPI00878912 ProteinModelPortal:F2Z2W7 SMR:F2Z2W7 PRIDE:F2Z2W7
Ensembl:ENST00000439169 OMA:YFHPQKL ArrayExpress:F2Z2W7 Bgee:F2Z2W7
Uniprot:F2Z2W7
Length = 643
Score = 206 (77.6 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 57/116 (49%), Positives = 69/116 (59%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G I E L GLTF+IS ++FFQ NT AEVLY +I+D A L D GS +VLD+ CGTGTI
Sbjct: 389 GDRCIHEDLLGLTFRISPHAFFQVNTPAAEVLYTVIQDWAQL-DAGS-MVLDVCCGTGTI 446
Query: 82 GLTLAR-------WV-----------KHVYGYEVVPQAISDACRNAKLNNISNATF 119
GL LAR WV K V G E+ P+A+ DA NA+ N +SN F
Sbjct: 447 GLALARGPMYSPPWVGRHHAFLFQKVKRVIGVELCPEAVEDARVNAQDNELSNVEF 502
Score = 184 (69.8 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 47/135 (34%), Positives = 69/135 (51%)
Query: 89 VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV-ISDPNR 147
VK V G E+ P+A+ DA NA+ N +SN F G + + +V I DP R
Sbjct: 472 VKRVIGVELCPEAVEDARVNAQDNELSNVEFHCGRAEDLVPTLVSRLASQHLVAILDPPR 531
Query: 148 PGMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGC-YKLKSLQPVD 205
G+H K+I + + K R++YVSCNP + LC ++ +KG ++ VD
Sbjct: 532 AGLHSKVILAIRRAKNLRRLLYVSCNPRAAMGNFVDLCRAPSNR-VKGIPFRPVKAVAVD 590
Query: 206 MFPHTPHIECVCLLE 220
+FP TPH E + L E
Sbjct: 591 LFPQTPHCEMLILFE 605
>UNIPROTKB|Q9UZK1 [details] [associations]
symbol:PYRAB11450 "23S rRNA
(uracil(747)-C(5))-methyltransferase" species:272844 "Pyrococcus
abyssi GE5" [GO:0031167 "rRNA methylation" evidence=IDA]
[GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity"
evidence=IDA] InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539
GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 EMBL:AJ248286
EMBL:HE613800 PIR:C75094 RefSeq:NP_126826.1
ProteinModelPortal:Q9UZK1 EnsemblBacteria:EBPYRT00000002314
GeneID:1496508 GenomeReviews:AL096836_GR KEGG:pab:PAB0760
eggNOG:COG2265 HOGENOM:HOG000029870 OMA:GCLWQGL
ProtClustDB:CLSK253194 GO:GO:0070041 InterPro:IPR015985
Pfam:PF03848 TIGRFAMs:TIGR00479 Uniprot:Q9UZK1
Length = 410
Score = 178 (67.7 bits), Expect = 5.1e-13, P = 5.1e-13
Identities = 54/163 (33%), Positives = 87/163 (53%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G I E++ GL + I ++FFQTN++ +L K +E A +GS+ VLDL+ G GT
Sbjct: 231 GNEFIRESIEGLVYLIHPSTFFQTNSYALPILLKAVESFA----EGSK-VLDLYSGVGTF 285
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN--KIGGDFGNAFPKPD 139
L LA+ V G EV +++ A ++A++N++ + +F+ G K+ G +
Sbjct: 286 SLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSL-DVSFIPGRAEDAKLKGY--------E 336
Query: 140 IVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+I DP R G+ K + K ++YVSCNP+ LDY
Sbjct: 337 TLIVDPPRKGLK-DFSKRIAKEGPENLIYVSCNPSKFV--LDY 376
Score = 166 (63.5 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 51/150 (34%), Positives = 78/150 (52%)
Query: 71 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD 130
VLDL+ G GT L LA+ V G EV +++ A ++A++N++ D++ I G
Sbjct: 275 VLDLYSGVGTFSLYLAKKGFEVTGVEVNEESVRVAKKSAEVNSL--------DVSFIPGR 326
Query: 131 FGNAFPKP-DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGD 189
+A K + +I DP R G+ K + K ++YVSCNP+ LDY +
Sbjct: 327 AEDAKLKGYETLIVDPPRKGLK-DFSKRIAKEGPENLIYVSCNPSKFV--LDYRNY---- 379
Query: 190 QNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ YK++ +DMFPHTPH+E V L
Sbjct: 380 --LSKAYKIEDAVLIDMFPHTPHVEAVVKL 407
>UNIPROTKB|P23003 [details] [associations]
symbol:trmA "tRNA m5U54 methyltransferase" species:83333
"Escherichia coli K-12" [GO:0030488 "tRNA methylation"
evidence=IMP] [GO:0030697 "S-adenosylmethionine-dependent tRNA
(m5U54) methyltransferase activity" evidence=IEA;IDA] [GO:0000049
"tRNA binding" evidence=IDA] [GO:0019843 "rRNA binding"
evidence=IDA] HAMAP:MF_01011 InterPro:IPR010280 InterPro:IPR011869
Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:U00006 GO:GO:0000049 GO:GO:0019843 eggNOG:COG2265
GO:GO:0030697 EMBL:M57568 EMBL:X66026 HOGENOM:HOG000218626
KO:K00557 OMA:ESGVWLI ProtClustDB:PRK05031 TIGRFAMs:TIGR02143
PIR:A37321 RefSeq:NP_418400.1 RefSeq:YP_491487.1 PDB:3BT7
PDBsum:3BT7 ProteinModelPortal:P23003 SMR:P23003 DIP:DIP-11031N
IntAct:P23003 MINT:MINT-1223595 PRIDE:P23003
EnsemblBacteria:EBESCT00000002426 EnsemblBacteria:EBESCT00000017604
GeneID:12931665 GeneID:947143 KEGG:ecj:Y75_p3223 KEGG:eco:b3965
PATRIC:32123451 EchoBASE:EB1015 EcoGene:EG11022
BioCyc:EcoCyc:EG11022-MONOMER BioCyc:ECOL316407:JW3937-MONOMER
BioCyc:MetaCyc:EG11022-MONOMER EvolutionaryTrace:P23003
Genevestigator:P23003 Uniprot:P23003
Length = 366
Score = 161 (61.7 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 56/194 (28%), Positives = 88/194 (45%)
Query: 40 NSFFQTNTHQ-AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVV 98
NSF Q N ++L ++ G + D +L+L+CG G L LAR V E+
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIA 241
Query: 99 PQAISDACRNAKLNNISNAT--------FVQG-----DLNKIGGDFGNAFPKPDIVISDP 145
+++ A N N+I N F Q + N++ G ++ I + DP
Sbjct: 242 KPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV-DP 300
Query: 146 NRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVD 205
R G+ + K + PRI+Y+SCNP T ++L+ L +K++ L D
Sbjct: 301 PRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THKVERLALFD 349
Query: 206 MFPHTPHIECVCLL 219
FP+T H+EC LL
Sbjct: 350 QFPYTHHMECGVLL 363
>TIGR_CMR|CJE_0918 [details] [associations]
symbol:CJE_0918 "tRNA (uracil-5-)-methyltransferase"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_01011 InterPro:IPR010280
InterPro:IPR011869 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG2265
GO:GO:0030697 GO:GO:0001510 RefSeq:YP_178920.1
ProteinModelPortal:Q5HUW5 STRING:Q5HUW5 GeneID:3231431
KEGG:cjr:CJE0918 PATRIC:20043603 HOGENOM:HOG000218626 KO:K00557
OMA:ESGVWLI ProtClustDB:PRK05031 BioCyc:CJEJ195099:GJC0-938-MONOMER
TIGRFAMs:TIGR02143 Uniprot:Q5HUW5
Length = 357
Score = 155 (59.6 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 56/212 (26%), Positives = 94/212 (44%)
Query: 20 LYGKSNITETL----RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLF 75
++ N+ +TL R + ++ + + F Q NT E + + C L +L+L+
Sbjct: 152 IFKTENLRQTLNIQGRKIFYEFNNDCFIQPNTTINEKMITWV--CEILNTQKRMDLLELY 209
Query: 76 CGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA- 134
CG G L LA + V E+ I+ A +N +LNN +N F + ++
Sbjct: 210 CGYGNFTLALAPFFFKVLATEISKSNINFALKNCELNNTTNIHFARLSSEELSLAIKKER 269
Query: 135 --FPKPDI---------VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYL 183
F DI V+ DP R G+ +I L+K K I+Y+SCNP T +L
Sbjct: 270 EFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVID-LIK-KYENIIYISCNPITLKENL--- 324
Query: 184 CHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 215
+ + ++++ D F +TPH+EC
Sbjct: 325 ------KELSLTHRVEEFALFDQFVNTPHLEC 350
>UNIPROTKB|Q8U2K7 [details] [associations]
symbol:PF0827 "23S rRNA
(uracil(747)-C(5))-methyltransferase" species:186497 "Pyrococcus
furiosus DSM 3638" [GO:0031167 "rRNA methylation" evidence=ISS]
[GO:0070041 "rRNA (uridine-C5-)-methyltransferase activity"
evidence=ISS] InterPro:IPR001566 InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 PROSITE:PS01231 GO:GO:0046872 GO:GO:0051539
GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG2265
HOGENOM:HOG000029870 ProtClustDB:CLSK253194 GO:GO:0070041
TIGRFAMs:TIGR00479 EMBL:AE009950 RefSeq:NP_578556.1
ProteinModelPortal:Q8U2K7 PRIDE:Q8U2K7
EnsemblBacteria:EBPYRT00000005959 GeneID:1468683
GenomeReviews:AE009950_GR KEGG:pfu:PF0827 OMA:VECRILE
Uniprot:Q8U2K7
Length = 409
Score = 152 (58.6 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 55/165 (33%), Positives = 83/165 (50%)
Query: 23 KSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIG 82
K I+E + G+ + + FFQTN++ +L K +E G D GS+ VLDL+ G GT
Sbjct: 230 KEFISEKIFGIKYLLRPGIFFQTNSYALPLLLKAVE---GFLD-GSK-VLDLYSGIGTFS 284
Query: 83 LTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV--QGDLNKIGGDFGNAFPKPDI 140
L L + +V G E+ A+ A +A+LN++ N F + + I G D
Sbjct: 285 LYLTKKGFNVVGVEINKTAVEVAKLSAELNSL-NVEFKAKRAEEENIEGY--------DA 335
Query: 141 VISDPNRPGMHMKLIKFLLKLKAPR-IVYVSCNPATCARDL-DYL 183
+I DP R G+ +++ K P +VYVSCNP D +YL
Sbjct: 336 LILDPPRKGLGE--FAGVVEKKGPENVVYVSCNPKRFILDFKNYL 378
Score = 149 (57.5 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 49/151 (32%), Positives = 74/151 (49%)
Query: 71 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD 130
VLDL+ G GT L L + +V G E+ A+ A +A+LN+++ V+ + +
Sbjct: 273 VLDLYSGIGTFSLYLTKKGFNVVGVEINKTAVEVAKLSAELNSLN----VEFKAKRAEEE 328
Query: 131 FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPR-IVYVSCNPATCARDL-DYLCHGVG 188
+ D +I DP R G+ +++ K P +VYVSCNP D +YL
Sbjct: 329 NIEGY---DALILDPPRKGLGE--FAGVVEKKGPENVVYVSCNPKRFILDFKNYLSRS-- 381
Query: 189 DQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
YK++ +DMFPHTPH+E V L
Sbjct: 382 -------YKVEDAILIDMFPHTPHVEAVIKL 405
>TIGR_CMR|SPO_0029 [details] [associations]
symbol:SPO_0029 "23S rRNA (Uracil-5-)-methyltransferase
rumA" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000154 "rRNA
modification" evidence=ISS] [GO:0008649 "rRNA methyltransferase
activity" evidence=ISS] InterPro:IPR010280 Pfam:PF05958
PROSITE:PS01230 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340 GO:GO:0008173
GO:GO:0001510 KO:K03215 RefSeq:YP_165302.1
ProteinModelPortal:Q5LWH2 GeneID:3196355 KEGG:sil:SPO0029
PATRIC:23373291 HOGENOM:HOG000029866 OMA:IPDCHLL
ProtClustDB:CLSK933121 Uniprot:Q5LWH2
Length = 417
Score = 147 (56.8 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 53/160 (33%), Positives = 72/160 (45%)
Query: 67 GSEIVLDLFCGTGTIGLTLARWVK-H-VYGYEVVPQAISDACRNAKLNNISNATFVQGDL 124
G+ V DLF G GT L LA + H V G + A+ R A+ + T DL
Sbjct: 268 GARRVADLFAGCGTFALPLAETAEVHAVEGESAMTAALDRGWRRAQ--GLKRVTTEARDL 325
Query: 125 NK--IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + D AF D V+ DP R G ++ + L + K P I YVSCNP T ARD
Sbjct: 326 FRRPLLPDELAAF---DAVVLDPPRAGAEAQVAE-LARAKPPVIAYVSCNPVTFARDAKT 381
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L ++ Y L +Q VD F + H+E L+
Sbjct: 382 L--------VQAGYSLNWVQVVDQFRWSAHVELAAAFSLA 413
>UNIPROTKB|Q9KVJ0 [details] [associations]
symbol:trmA "tRNA (uracil(54)-C(5))-methyltransferase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006400 "tRNA modification" evidence=ISS] HAMAP:MF_01011
InterPro:IPR010280 InterPro:IPR011869 Pfam:PF05958 PROSITE:PS01230
PROSITE:PS01231 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006400 eggNOG:COG2265 GO:GO:0030697 GO:GO:0001510 KO:K00557
OMA:ESGVWLI ProtClustDB:PRK05031 TIGRFAMs:TIGR02143 PIR:H82357
RefSeq:NP_229812.1 ProteinModelPortal:Q9KVJ0 SMR:Q9KVJ0
DNASU:2612955 GeneID:2612955 KEGG:vch:VC0154 PATRIC:20079346
Uniprot:Q9KVJ0
Length = 369
Score = 145 (56.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 55/196 (28%), Positives = 86/196 (43%)
Query: 40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVP 99
NSF Q N AE + + DC + +L+L+CG G L LA+ + V E+
Sbjct: 186 NSFTQPNAKVAEKMLEWAVDCT---QESKGDLLELYCGNGNFSLALAQNFERVLATELAK 242
Query: 100 QAISDACRNAKLNNISNATFV-----------QG--DLNKIGGDFGNAFP--KPDIVISD 144
++ A N N I N + +G + N++ D G + + + D
Sbjct: 243 PSVEAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLK-DAGVDLQSYRCNTIFVD 301
Query: 145 PNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPV 204
P R GM + K + + RI+Y+SCNP T +L L G Q ++ + L
Sbjct: 302 PPRSGMDIDTCKMVQGYE--RILYISCNPETLQENLQVL--GETHQVVR--FAL-----F 350
Query: 205 DMFPHTPHIECVCLLE 220
D FP+T H+E +LE
Sbjct: 351 DQFPYTHHMEAGVMLE 366
>TIGR_CMR|VC_0154 [details] [associations]
symbol:VC_0154 "tRNA (uracil-5-)-methyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_01011 InterPro:IPR010280
InterPro:IPR011869 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006400
eggNOG:COG2265 GO:GO:0030697 GO:GO:0001510 KO:K00557 OMA:ESGVWLI
ProtClustDB:PRK05031 TIGRFAMs:TIGR02143 PIR:H82357
RefSeq:NP_229812.1 ProteinModelPortal:Q9KVJ0 SMR:Q9KVJ0
DNASU:2612955 GeneID:2612955 KEGG:vch:VC0154 PATRIC:20079346
Uniprot:Q9KVJ0
Length = 369
Score = 145 (56.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 55/196 (28%), Positives = 86/196 (43%)
Query: 40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVP 99
NSF Q N AE + + DC + +L+L+CG G L LA+ + V E+
Sbjct: 186 NSFTQPNAKVAEKMLEWAVDCT---QESKGDLLELYCGNGNFSLALAQNFERVLATELAK 242
Query: 100 QAISDACRNAKLNNISNATFV-----------QG--DLNKIGGDFGNAFP--KPDIVISD 144
++ A N N I N + +G + N++ D G + + + D
Sbjct: 243 PSVEAAQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLK-DAGVDLQSYRCNTIFVD 301
Query: 145 PNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPV 204
P R GM + K + + RI+Y+SCNP T +L L G Q ++ + L
Sbjct: 302 PPRSGMDIDTCKMVQGYE--RILYISCNPETLQENLQVL--GETHQVVR--FAL-----F 350
Query: 205 DMFPHTPHIECVCLLE 220
D FP+T H+E +LE
Sbjct: 351 DQFPYTHHMEAGVMLE 366
>TIGR_CMR|CPS_0336 [details] [associations]
symbol:CPS_0336 "tRNA (uracil-5-)-methyltransferase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_01011 InterPro:IPR010280
InterPro:IPR011869 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG2265
GO:GO:0030697 GO:GO:0001510 HOGENOM:HOG000218626 KO:K00557
OMA:ESGVWLI ProtClustDB:PRK05031 TIGRFAMs:TIGR02143
RefSeq:YP_267102.1 ProteinModelPortal:Q48A12 SMR:Q48A12
STRING:Q48A12 GeneID:3519775 KEGG:cps:CPS_0336 PATRIC:21464059
BioCyc:CPSY167879:GI48-439-MONOMER Uniprot:Q48A12
Length = 364
Score = 138 (53.6 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 54/221 (24%), Positives = 93/221 (42%)
Query: 15 EEEYTLYGKSNITETLR--GLTF--QISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEI 70
+++ + K + E+L G T+ Q NSF Q N E + + ++ G ++
Sbjct: 155 KKQKIIVDKDYVMESLNVGGKTYVYQQVENSFTQPNAGVNEQMLLWAQQAT--QNAGGDL 212
Query: 71 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK---- 126
+ +L+CG G + LA + V G E+ ++ A N N I N V+ +
Sbjct: 213 I-ELYCGNGNFSIALAENFERVLGTEISKTSVRSAQINISENGIDNIDIVRMSSEEFSQA 271
Query: 127 IGG--------DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR 178
+ G DF D V+ DP R G+ ++ + + +I+Y+SCNP T
Sbjct: 272 MNGERKFRRLEDFDLTTYNYDTVLVDPPRAGLDRDSVELVRRFN--KIIYISCNPETLKD 329
Query: 179 DLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+L L +++ D FP+T HIE +L
Sbjct: 330 NLALLVE---------THQIDKFALFDQFPYTDHIETGVIL 361
>TIGR_CMR|SO_0206 [details] [associations]
symbol:SO_0206 "tRNA (uracil-5-)-methyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_01011 InterPro:IPR010280
InterPro:IPR011869 Pfam:PF05958 PROSITE:PS01230 PROSITE:PS01231
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG2265
GO:GO:0030697 GO:GO:0001510 HOGENOM:HOG000218626 KO:K00557
ProtClustDB:PRK05031 TIGRFAMs:TIGR02143 RefSeq:NP_715847.1
ProteinModelPortal:Q8CX51 SMR:Q8CX51 GeneID:1168091
KEGG:son:SO_0206 PATRIC:23520087 OMA:YNIEANG Uniprot:Q8CX51
Length = 366
Score = 136 (52.9 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 48/193 (24%), Positives = 82/193 (42%)
Query: 40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVP 99
NSF Q N A+V K++E + + +L+L+CG G + LA+ V E+
Sbjct: 185 NSFTQPN---AKVAIKMLEWAIDVTQNSQGDLLELYCGNGNFSIALAQNFNRVLATELAK 241
Query: 100 QAISDACRNAKLNNISNATFVQGDLNKIGGDFGN--AFPKPD----------IVISDPNR 147
++ A N ++N I N ++ + +F + + + DP R
Sbjct: 242 PSVDAAQYNIEINGIDNLQIIRMSAEEFSDAMAKKRSFRRLEGIDLDSYLCNTIFVDPPR 301
Query: 148 PGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMF 207
G+ + + + RI+Y+SCNP T +L Q + +K+ D F
Sbjct: 302 AGIDPATLDLVQGYE--RILYISCNPDTLKDNL---------QQLYKTHKVTRFALFDQF 350
Query: 208 PHTPHIECVCLLE 220
P+T H+E LLE
Sbjct: 351 PYTDHMETGVLLE 363
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.140 0.433 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 222 209 0.00079 112 3 11 22 0.48 32
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 58
No. of states in DFA: 608 (65 KB)
Total size of DFA: 183 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.57u 0.08s 18.65t Elapsed: 00:00:00
Total cpu time: 18.58u 0.08s 18.66t Elapsed: 00:00:00
Start: Fri May 10 20:17:37 2013 End: Fri May 10 20:17:37 2013