BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043853
(222 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357454725|ref|XP_003597643.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Medicago truncatula]
gi|355486691|gb|AES67894.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Medicago truncatula]
Length = 560
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/221 (87%), Positives = 207/221 (93%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
MNNVNTSVGNTSVGEEEYTL+GKS+ITETLRGLTFQISANSFFQTNTHQAEVLYKLIE+C
Sbjct: 339 MNNVNTSVGNTSVGEEEYTLHGKSSITETLRGLTFQISANSFFQTNTHQAEVLYKLIEEC 398
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AG+R DGSE+VLDLFCGTGTIGLTLAR VKHVYGYEVVPQAI+DA NAK+N I NATF+
Sbjct: 399 AGIRGDGSEVVLDLFCGTGTIGLTLARSVKHVYGYEVVPQAIADARLNAKINGIQNATFI 458
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+GDLNKI +FG FPKPDIVISDPNRPGMHMKLIKFLL L+APRIVYVSCNPATCARDL
Sbjct: 459 EGDLNKIDANFGKNFPKPDIVISDPNRPGMHMKLIKFLLNLRAPRIVYVSCNPATCARDL 518
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
DYLCHGV + NI+GCYKL SLQPVDMFPHTPHIECVCLLEL
Sbjct: 519 DYLCHGVAELNIEGCYKLISLQPVDMFPHTPHIECVCLLEL 559
>gi|356547359|ref|XP_003542081.1| PREDICTED: uncharacterized RNA methyltransferase CT0009-like
[Glycine max]
Length = 533
Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/222 (86%), Positives = 207/222 (93%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNVNTSVGNTSVGEEEYTLYGKS+ITETLRGLTFQISANSFFQTNT+QAEVLYKLIEDC
Sbjct: 312 INNVNTSVGNTSVGEEEYTLYGKSSITETLRGLTFQISANSFFQTNTYQAEVLYKLIEDC 371
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AG++ D SEIVLDLFCGTGTIGLTLAR V+HVYGYEVVPQAI+DA NAK+N I NATFV
Sbjct: 372 AGVKGDDSEIVLDLFCGTGTIGLTLARSVRHVYGYEVVPQAITDARLNAKINGIQNATFV 431
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
QGDLNKI +FG FPKPDIVISDPNRPGMH+KLIKFLL L+APRIVYVSCNPATCARDL
Sbjct: 432 QGDLNKIDENFGKNFPKPDIVISDPNRPGMHIKLIKFLLNLRAPRIVYVSCNPATCARDL 491
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
DYLCHGV ++NI+GCYKL SLQPVDMFPHTPHIECVCLLEL
Sbjct: 492 DYLCHGVEEKNIEGCYKLISLQPVDMFPHTPHIECVCLLELQ 533
>gi|449447830|ref|XP_004141670.1| PREDICTED: uncharacterized RNA methyltransferase BT_0643-like
[Cucumis sativus]
gi|449480609|ref|XP_004155944.1| PREDICTED: uncharacterized RNA methyltransferase BT_0643-like
[Cucumis sativus]
Length = 562
Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/222 (84%), Positives = 207/222 (93%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NN+N+SVGNTSVGEEE+ LYGKS+I E+LRGLTFQISANSFFQTNTHQAEVLY+LIE+C
Sbjct: 334 VNNINSSVGNTSVGEEEHVLYGKSSIRESLRGLTFQISANSFFQTNTHQAEVLYRLIEEC 393
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL+ DGSEIVLDLFCGTGTIGLTLA+ +HVYGYEVVPQAI DAC NA+LN+I NATFV
Sbjct: 394 AGLKGDGSEIVLDLFCGTGTIGLTLAKRARHVYGYEVVPQAIKDACLNAELNSICNATFV 453
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
QGDLNKI +FGN FPKPDI+ISDPNRPGMHMKLIKFLLK+K PRIVYVSCNPATCARDL
Sbjct: 454 QGDLNKIDQNFGNNFPKPDIIISDPNRPGMHMKLIKFLLKIKTPRIVYVSCNPATCARDL 513
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
DYLCHGV ++ IKGCY LKSLQPVDMFPHTPHIECVCLLEL+
Sbjct: 514 DYLCHGVVEEGIKGCYTLKSLQPVDMFPHTPHIECVCLLELT 555
>gi|255549690|ref|XP_002515896.1| RNA m5u methyltransferase, putative [Ricinus communis]
gi|223544801|gb|EEF46316.1| RNA m5u methyltransferase, putative [Ricinus communis]
Length = 577
Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/221 (90%), Positives = 207/221 (93%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNVN+SVGNTSVGEEEYT+YGKS ITE LRGLTFQISANSFFQTNT QAEVLYKLIEDC
Sbjct: 356 VNNVNSSVGNTSVGEEEYTIYGKSTITEILRGLTFQISANSFFQTNTRQAEVLYKLIEDC 415
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGLR DGSEIVLDLFCGTGTIGLTLA KHVYGYEVVPQAISDA RNA+LN I+NATFV
Sbjct: 416 AGLRGDGSEIVLDLFCGTGTIGLTLAGRAKHVYGYEVVPQAISDARRNAELNGITNATFV 475
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
QGDLNKI FGN FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL
Sbjct: 476 QGDLNKISDSFGNNFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 535
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
DYLCHGV +QNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL
Sbjct: 536 DYLCHGVEEQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 576
>gi|218187673|gb|EEC70100.1| hypothetical protein OsI_00745 [Oryza sativa Indica Group]
Length = 624
Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/221 (82%), Positives = 203/221 (91%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
MNNVNTSVGNTSVGEEEYTLYGK ITE LRGLTFQISANSFFQTNT QA+VLYKLI +
Sbjct: 403 MNNVNTSVGNTSVGEEEYTLYGKPTITEMLRGLTFQISANSFFQTNTKQADVLYKLIGES 462
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL+ DGSEI+LDLFCGTGTIGLTLAR KHVYGYEVVP+AI+DA +NAKLN ISNATFV
Sbjct: 463 AGLKGDGSEIILDLFCGTGTIGLTLARRAKHVYGYEVVPEAIADAKKNAKLNGISNATFV 522
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
QGDLNKI FG FPKPDI+ISDPNRPGMHMKLIK+LL++KAPRIVYVSCNPATCARDL
Sbjct: 523 QGDLNKINETFGKEFPKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDL 582
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
DYLCHGV ++++KGCY+LK++ PVDMFPHTPHIEC+C+LEL
Sbjct: 583 DYLCHGVEEKDLKGCYELKTVIPVDMFPHTPHIECICVLEL 623
>gi|222617909|gb|EEE54041.1| hypothetical protein OsJ_00721 [Oryza sativa Japonica Group]
Length = 558
Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/221 (82%), Positives = 203/221 (91%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
MNNVNTSVGNTSVGEEEYTLYGK ITE LRGLTFQISANSFFQTNT QA+VLYKLI +
Sbjct: 337 MNNVNTSVGNTSVGEEEYTLYGKPTITEMLRGLTFQISANSFFQTNTKQADVLYKLIGES 396
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL+ DGSEI+LDLFCGTGTIGLTLAR KHVYGYEVVP+AI+DA +NAKLN ISNATFV
Sbjct: 397 AGLKGDGSEIILDLFCGTGTIGLTLARRAKHVYGYEVVPEAIADAKKNAKLNGISNATFV 456
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
QGDLNKI FG FPKPDI+ISDPNRPGMHMKLIK+LL++KAPRIVYVSCNPATCARDL
Sbjct: 457 QGDLNKINETFGKEFPKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDL 516
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
DYLCHGV ++++KGCY+LK++ PVDMFPHTPHIEC+C+LEL
Sbjct: 517 DYLCHGVEEKDLKGCYELKTVIPVDMFPHTPHIECICVLEL 557
>gi|115435048|ref|NP_001042282.1| Os01g0193600 [Oryza sativa Japonica Group]
gi|9988445|dbj|BAB12711.1| putative RNA methyltransferase [Oryza sativa Japonica Group]
gi|10934074|dbj|BAB16852.1| putative RNA methyltransferase [Oryza sativa Japonica Group]
gi|113531813|dbj|BAF04196.1| Os01g0193600 [Oryza sativa Japonica Group]
gi|215697095|dbj|BAG91089.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 557
Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/221 (82%), Positives = 203/221 (91%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
MNNVNTSVGNTSVGEEEYTLYGK ITE LRGLTFQISANSFFQTNT QA+VLYKLI +
Sbjct: 336 MNNVNTSVGNTSVGEEEYTLYGKPTITEMLRGLTFQISANSFFQTNTKQADVLYKLIGES 395
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL+ DGSEI+LDLFCGTGTIGLTLAR KHVYGYEVVP+AI+DA +NAKLN ISNATFV
Sbjct: 396 AGLKGDGSEIILDLFCGTGTIGLTLARRAKHVYGYEVVPEAIADAKKNAKLNGISNATFV 455
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
QGDLNKI FG FPKPDI+ISDPNRPGMHMKLIK+LL++KAPRIVYVSCNPATCARDL
Sbjct: 456 QGDLNKINETFGKEFPKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDL 515
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
DYLCHGV ++++KGCY+LK++ PVDMFPHTPHIEC+C+LEL
Sbjct: 516 DYLCHGVEEKDLKGCYELKTVIPVDMFPHTPHIECICVLEL 556
>gi|242051741|ref|XP_002455016.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor]
gi|241926991|gb|EES00136.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor]
Length = 558
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/221 (83%), Positives = 202/221 (91%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNVN+SVGNTSVGE+EYTLYGK NITE LRGLTFQISANSFFQTNT QA+VLYKLIED
Sbjct: 337 INNVNSSVGNTSVGEQEYTLYGKPNITEMLRGLTFQISANSFFQTNTKQADVLYKLIEDS 396
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL+ DGSEIVLDLFCGTGTIGLTLAR KHVYGYEVVP+AI+DA +NAKLN I NATFV
Sbjct: 397 AGLKGDGSEIVLDLFCGTGTIGLTLARRAKHVYGYEVVPEAIADARKNAKLNGIDNATFV 456
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
QGDLNKI FG FPKPDI+ISDPNRPGMHMKLIK+LL++KAPRIVYVSCNPATCARDL
Sbjct: 457 QGDLNKINESFGKEFPKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDL 516
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
DYLCHGV +++++G Y LKS+ PVDMFPHTPHIECVCLLEL
Sbjct: 517 DYLCHGVEEKDLRGFYDLKSVIPVDMFPHTPHIECVCLLEL 557
>gi|225442369|ref|XP_002276511.1| PREDICTED: uncharacterized RNA methyltransferase CT0009 [Vitis
vinifera]
gi|297743126|emb|CBI35993.3| unnamed protein product [Vitis vinifera]
Length = 570
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/221 (87%), Positives = 208/221 (94%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NN+NTSVG+TSVGE+EY L+GKS ITE LRGLTFQISANSFFQTNTHQAEVLYKLIEDC
Sbjct: 349 VNNINTSVGSTSVGEQEYILHGKSAITEILRGLTFQISANSFFQTNTHQAEVLYKLIEDC 408
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGLR DGSEIVLDLFCGTGTIGLTL+R V+HVYGYEVV QA+SDA RNAKLN I NATF+
Sbjct: 409 AGLRGDGSEIVLDLFCGTGTIGLTLSRRVRHVYGYEVVAQAVSDARRNAKLNGICNATFI 468
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+GDLNKIG +FG FPKPD+VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL
Sbjct: 469 EGDLNKIGENFGKDFPKPDVVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 528
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
DYLCHGV +QNI+GCYKLKSLQPVDMFPHTPHIECVCLLEL
Sbjct: 529 DYLCHGVVEQNIEGCYKLKSLQPVDMFPHTPHIECVCLLEL 569
>gi|19310570|gb|AAL85018.1| unknown protein [Arabidopsis thaliana]
Length = 564
Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/222 (86%), Positives = 208/222 (93%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
MNNVN+SVGNTSVGE+EYTLYGK ITE LRGLTFQISANSFFQTNTHQAEVLYKLIE+
Sbjct: 343 MNNVNSSVGNTSVGEKEYTLYGKDTITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEES 402
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL+ DGSE+VLDLFCGTGTIGLTLAR KHVYGYEVVPQAI+DA +NA++N I NATF+
Sbjct: 403 AGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGIENATFI 462
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
QGDLNKIG DFGN FPKPDIVISDPNRPGMHMKLIKFLLKLK+PRI+YVSCNPATCARDL
Sbjct: 463 QGDLNKIGEDFGNNFPKPDIVISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDL 522
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
DYLCHGV ++N+KGCYKL S+QPVDMFPHTPHIECVCLLEL+
Sbjct: 523 DYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLLELA 564
>gi|42565079|ref|NP_188767.2| RNA methyltransferase family protein [Arabidopsis thaliana]
gi|9280234|dbj|BAB01724.1| RNA methyltransferase-like protein [Arabidopsis thaliana]
gi|332642969|gb|AEE76490.1| RNA methyltransferase family protein [Arabidopsis thaliana]
Length = 554
Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/222 (86%), Positives = 208/222 (93%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
MNNVN+SVGNTSVGE+EYTLYGK ITE LRGLTFQISANSFFQTNTHQAEVLYKLIE+
Sbjct: 333 MNNVNSSVGNTSVGEKEYTLYGKDTITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEES 392
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL+ DGSE+VLDLFCGTGTIGLTLAR KHVYGYEVVPQAI+DA +NA++N I NATF+
Sbjct: 393 AGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGIENATFI 452
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
QGDLNKIG DFGN FPKPDIVISDPNRPGMHMKLIKFLLKLK+PRI+YVSCNPATCARDL
Sbjct: 453 QGDLNKIGEDFGNNFPKPDIVISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDL 512
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
DYLCHGV ++N+KGCYKL S+QPVDMFPHTPHIECVCLLEL+
Sbjct: 513 DYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLLELA 554
>gi|195614602|gb|ACG29131.1| hypothetical protein [Zea mays]
Length = 558
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/221 (81%), Positives = 202/221 (91%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNVN+SVGN+SVGE+EYTLYGK NITE LRGL FQISANSFFQTNT QA+VLYKLIED
Sbjct: 337 INNVNSSVGNSSVGEQEYTLYGKPNITEMLRGLAFQISANSFFQTNTKQADVLYKLIEDS 396
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL+ DGSEIVLDLFCGTGTIGLTLAR KH+YGYEVVP+AI DA +NAKLN I+NATFV
Sbjct: 397 AGLKGDGSEIVLDLFCGTGTIGLTLARRAKHIYGYEVVPEAIEDARKNAKLNGINNATFV 456
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
QGDLNKI FG FPKPDI+ISDPNRPGMHMKLIK+LL++KAPRIVYVSCNPATCARDL
Sbjct: 457 QGDLNKINESFGKEFPKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDL 516
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
DYLCHGV +++++G Y+LKS+ PVDMFPHTPHIECVCLLEL
Sbjct: 517 DYLCHGVEEKDLRGFYELKSVIPVDMFPHTPHIECVCLLEL 557
>gi|194707300|gb|ACF87734.1| unknown [Zea mays]
Length = 360
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/221 (81%), Positives = 201/221 (90%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNVN+SVGN+SVGE+EYTLYGK NITE LRGL FQISANSFFQTNT QA+VLYKLIED
Sbjct: 139 INNVNSSVGNSSVGEQEYTLYGKPNITEMLRGLAFQISANSFFQTNTKQADVLYKLIEDS 198
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL+ DGSEIVLDLFCGTGTIGLT AR KH+YGYEVVP+AI DA +NAKLN I+NATFV
Sbjct: 199 AGLKGDGSEIVLDLFCGTGTIGLTFARRAKHIYGYEVVPEAIEDARKNAKLNGINNATFV 258
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
QGDLNKI FG FPKPDI+ISDPNRPGMHMKLIK+LL++KAPRIVYVSCNPATCARDL
Sbjct: 259 QGDLNKINESFGKEFPKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDL 318
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
DYLCHGV +++++G Y+LKS+ PVDMFPHTPHIECVCLLEL
Sbjct: 319 DYLCHGVEEKDLRGFYELKSVIPVDMFPHTPHIECVCLLEL 359
>gi|297835104|ref|XP_002885434.1| RNA methyltransferase family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297331274|gb|EFH61693.1| RNA methyltransferase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 559
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/222 (85%), Positives = 207/222 (93%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
MNNVN+SVGNTSVGE+EYTLYGK ITE LRGLTFQISANSFFQTNTHQAEVLYKLIE+
Sbjct: 331 MNNVNSSVGNTSVGEKEYTLYGKDTITEVLRGLTFQISANSFFQTNTHQAEVLYKLIEES 390
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL+ DGSE+VLDLFCGTGTIGLTLAR KH+YGYEVVPQAI+DA +NA++N I NATF+
Sbjct: 391 AGLKGDGSEVVLDLFCGTGTIGLTLARRAKHIYGYEVVPQAITDAHKNAQINGIENATFI 450
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
QGDLNKIG DFGN FPKPDIVISDPNRPGMHMKLIKFLLKLK+PRI+YVSCNPATCARDL
Sbjct: 451 QGDLNKIGEDFGNNFPKPDIVISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDL 510
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
DYLCHGV ++NIKGCYKL S+QPVDMFPHTPHIECVC LEL+
Sbjct: 511 DYLCHGVEEKNIKGCYKLMSVQPVDMFPHTPHIECVCFLELA 552
>gi|226494722|ref|NP_001143116.1| uncharacterized protein LOC100275594 [Zea mays]
gi|224031061|gb|ACN34606.1| unknown [Zea mays]
gi|414875873|tpg|DAA53004.1| TPA: hypothetical protein ZEAMMB73_967976 [Zea mays]
gi|414875874|tpg|DAA53005.1| TPA: hypothetical protein ZEAMMB73_967976 [Zea mays]
Length = 558
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/221 (81%), Positives = 201/221 (90%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNVN+SVGN+SVGE+EYTLYGK NITE LRGL FQISANSFFQTNT QA+VLYKLIED
Sbjct: 337 INNVNSSVGNSSVGEQEYTLYGKPNITEMLRGLAFQISANSFFQTNTKQADVLYKLIEDS 396
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL+ DGSEIVLDLFCGTGTIGLT AR KH+YGYEVVP+AI DA +NAKLN I+NATFV
Sbjct: 397 AGLKGDGSEIVLDLFCGTGTIGLTFARRAKHIYGYEVVPEAIEDARKNAKLNGINNATFV 456
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
QGDLNKI FG FPKPDI+ISDPNRPGMHMKLIK+LL++KAPRIVYVSCNPATCARDL
Sbjct: 457 QGDLNKINESFGKEFPKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSCNPATCARDL 516
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
DYLCHGV +++++G Y+LKS+ PVDMFPHTPHIECVCLLEL
Sbjct: 517 DYLCHGVEEKDLRGFYELKSVIPVDMFPHTPHIECVCLLEL 557
>gi|356557321|ref|XP_003546965.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized RNA
methyltransferase CT0009-like [Glycine max]
Length = 535
Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/209 (88%), Positives = 193/209 (92%)
Query: 14 GEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLD 73
GEEEYTLYGKS+ITETLRG TFQISANSFFQTNT+QAEVLYKLIEDCAG+R DGSEIVLD
Sbjct: 327 GEEEYTLYGKSSITETLRGCTFQISANSFFQTNTYQAEVLYKLIEDCAGVRGDGSEIVLD 386
Query: 74 LFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN 133
LFCGTGTIGLTLAR +HVYGYEVVPQAI+DA NAK+N I NATFVQGDLNKI +FG
Sbjct: 387 LFCGTGTIGLTLARSDRHVYGYEVVPQAITDAHLNAKINGIKNATFVQGDLNKIDENFGK 446
Query: 134 AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIK 193
FPKPDIVISDPNRPGMHMKLIKFLL L+APRIVYVSCNPATCARDLDYLCHGV +QNIK
Sbjct: 447 NFPKPDIVISDPNRPGMHMKLIKFLLNLRAPRIVYVSCNPATCARDLDYLCHGVVEQNIK 506
Query: 194 GCYKLKSLQPVDMFPHTPHIECVCLLELS 222
GCYKL SLQPVDMFPHTPHIECVCLLEL
Sbjct: 507 GCYKLISLQPVDMFPHTPHIECVCLLELQ 535
>gi|294461082|gb|ADE76108.1| unknown [Picea sitchensis]
Length = 575
Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 172/221 (77%), Positives = 197/221 (89%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NN+NTSVGNTS+GEEEY L+G S ITE LRGL F+ISANSFFQTNT+QAE LY+LIE+
Sbjct: 354 VNNINTSVGNTSIGEEEYILHGNSTITECLRGLVFEISANSFFQTNTYQAEKLYQLIEEA 413
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR DGSEIVLDLFCGTGTIGLTLA+ VK+VYGYEVVPQA++DA RNA+ N+I NA F+
Sbjct: 414 ANLRGDGSEIVLDLFCGTGTIGLTLAKKVKNVYGYEVVPQAVADARRNAERNDIQNAKFI 473
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+GDLNKIG DFGN FP PDIVI+DPNRPGMH KLI+FLLKL+A RI+YVSCNPATCARDL
Sbjct: 474 EGDLNKIGDDFGNEFPCPDIVITDPNRPGMHTKLIRFLLKLRASRIIYVSCNPATCARDL 533
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
DYLCHG+ + N+ G Y+LK +QPVDMFPHTPHIECVCLLEL
Sbjct: 534 DYLCHGLPESNMPGAYQLKGVQPVDMFPHTPHIECVCLLEL 574
>gi|357127569|ref|XP_003565452.1| PREDICTED: uncharacterized RNA methyltransferase CT0009-like
[Brachypodium distachyon]
Length = 581
Score = 365 bits (938), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 172/211 (81%), Positives = 190/211 (90%)
Query: 11 TSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEI 70
TSVGE+EYTLYGK ITE LRGLTFQISANSFFQTNT QA+VLYKLIED AGL+ DGSEI
Sbjct: 370 TSVGEQEYTLYGKPTITEMLRGLTFQISANSFFQTNTKQADVLYKLIEDSAGLKGDGSEI 429
Query: 71 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD 130
VLDLFCGTGTIGLTLAR KHVYGYEVVP+AI+DA +NA+ N I NATFVQGDLNKI
Sbjct: 430 VLDLFCGTGTIGLTLARRAKHVYGYEVVPEAIADAQKNAEFNGIRNATFVQGDLNKINET 489
Query: 131 FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQ 190
FG FPKPDI+ISDPNRPGMHMKLIK+LL++KAPRIVYVSCNP+TCARDLDYLCHGV ++
Sbjct: 490 FGKQFPKPDIIISDPNRPGMHMKLIKWLLEVKAPRIVYVSCNPSTCARDLDYLCHGVEEK 549
Query: 191 NIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
++GCY+LK + PVDMFPHTPHIECVCLLEL
Sbjct: 550 GLRGCYELKRVIPVDMFPHTPHIECVCLLEL 580
>gi|147797617|emb|CAN65004.1| hypothetical protein VITISV_023490 [Vitis vinifera]
Length = 1255
Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 163/196 (83%), Positives = 175/196 (89%), Gaps = 9/196 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQ---------AE 51
+NN+NTSVG+TSVGE+EY L+GKS ITE LRGLTFQISANSFFQTNTHQ AE
Sbjct: 321 VNNINTSVGSTSVGEQEYILHGKSAITEILRGLTFQISANSFFQTNTHQQILRLYNVQAE 380
Query: 52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKL 111
VLYKLIEDCAGLR DGSEIVLDLFCGTGTIGLTL+R V+HVYGYEVV QA+SDA RNAKL
Sbjct: 381 VLYKLIEDCAGLRGDGSEIVLDLFCGTGTIGLTLSRRVRHVYGYEVVAQAVSDARRNAKL 440
Query: 112 NNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC 171
N I NATF++GDLNKIG +FG FPKPD+VISDPNRPGMHMKLIKFLLKLKAPRIVYVSC
Sbjct: 441 NGICNATFIEGDLNKIGENFGKDFPKPDVVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC 500
Query: 172 NPATCARDLDYLCHGV 187
NPATCARDLDYLCHGV
Sbjct: 501 NPATCARDLDYLCHGV 516
>gi|168028766|ref|XP_001766898.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681877|gb|EDQ68300.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 492
Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 146/223 (65%), Positives = 185/223 (82%), Gaps = 3/223 (1%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNVN++VG +S+ ++E+ LYGK+ ITE LRGL F+ISANSFFQTNT QAEVLY+ +E+
Sbjct: 269 VNNVNSAVGPSSIVDKEHVLYGKAYITERLRGLVFEISANSFFQTNTSQAEVLYQKVEEQ 328
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L+ DGSE++LDLFCGTGTIGL++A+ VKHVYGYE+V +A+ DA RNA N I NATF+
Sbjct: 329 CALKGDGSEVLLDLFCGTGTIGLSMAKRVKHVYGYELVQEAVVDARRNAARNGIQNATFI 388
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
QGDLNK+ +FG FP+PD+VI+DPNRPGMH+KLIK+LL+L+A RIVY+SCNPATCARDL
Sbjct: 389 QGDLNKLTDEFGKDFPRPDVVITDPNRPGMHIKLIKYLLQLRARRIVYISCNPATCARDL 448
Query: 181 DYLCHGVGDQNIKGC--YKLKSLQPVDMFPHTPHIECVCLLEL 221
D LCH GD+ ++ Y+L +QPVDMFP TPHIEC+ LEL
Sbjct: 449 DLLCH-TGDEGVESPTRYRLVHVQPVDMFPQTPHIECITTLEL 490
>gi|302784258|ref|XP_002973901.1| hypothetical protein SELMODRAFT_100133 [Selaginella moellendorffii]
gi|300158233|gb|EFJ24856.1| hypothetical protein SELMODRAFT_100133 [Selaginella moellendorffii]
Length = 536
Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 144/223 (64%), Positives = 178/223 (79%), Gaps = 1/223 (0%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNV +S+ NT VGE++Y LYG ITE LRGL F+ISANSFFQTNT QAEVLY+++E
Sbjct: 313 VNNVTSSMANTGVGEKQYLLYGAPAITERLRGLVFEISANSFFQTNTSQAEVLYEVVEKA 372
Query: 61 AGLRDDGSEI-VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATF 119
L + SE+ +LDLFCGTGTIGL++A V HVYGYE+V +A+++A RNA NNI NATF
Sbjct: 373 CNLTEASSEMNMLDLFCGTGTIGLSMANKVNHVYGYELVQEAVANARRNANRNNILNATF 432
Query: 120 VQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
+QGDLNK+ FG FP+PDI+I+DPNRPGMH KL++F+LK A R+VYVSCNPATCARD
Sbjct: 433 IQGDLNKLTSGFGGNFPRPDIIITDPNRPGMHPKLLQFILKSGAARVVYVSCNPATCARD 492
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
LD LCH ++ G Y+L S+QP+DMFPHTPH+ECVC LELS
Sbjct: 493 LDVLCHSKDGSDLAGGYRLLSVQPIDMFPHTPHVECVCALELS 535
>gi|302771483|ref|XP_002969160.1| hypothetical protein SELMODRAFT_170457 [Selaginella moellendorffii]
gi|300163665|gb|EFJ30276.1| hypothetical protein SELMODRAFT_170457 [Selaginella moellendorffii]
Length = 536
Score = 294 bits (753), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/223 (64%), Positives = 178/223 (79%), Gaps = 1/223 (0%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNV +S+ NT VGE++Y LYG ITE LRGL F+ISANSFFQTNT QAEVLY+++E
Sbjct: 313 VNNVTSSMANTGVGEKQYLLYGAPAITERLRGLVFEISANSFFQTNTSQAEVLYEVVEKA 372
Query: 61 AGLRDDGSEI-VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATF 119
L + SE+ +LDLFCGTGTIGL++A V HVYGYE+V +A+++A RNA NNI NATF
Sbjct: 373 CNLTEASSEMNMLDLFCGTGTIGLSMANKVNHVYGYELVQEAVANARRNANRNNILNATF 432
Query: 120 VQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
+QGDLNK+ FG FP+PDI+I+DPNRPGMH KL++F+LK A R+VYVSCNPATCARD
Sbjct: 433 IQGDLNKLTSGFGANFPRPDIIIADPNRPGMHPKLLQFILKSGAARVVYVSCNPATCARD 492
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
LD LCH ++ G Y+L S+QP+DMFPHTPH+ECVC LELS
Sbjct: 493 LDVLCHSKDGSDLAGGYRLLSVQPIDMFPHTPHVECVCALELS 535
>gi|255074621|ref|XP_002500985.1| predicted protein [Micromonas sp. RCC299]
gi|226516248|gb|ACO62243.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 473
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/212 (52%), Positives = 142/212 (66%), Gaps = 6/212 (2%)
Query: 9 GNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
G GE+ L G + + LRG+TF +SA SFFQTNT QAE L +ED G DG+
Sbjct: 266 GEGWSGEDVEVLSGAATLPMKLRGVTFALSAPSFFQTNTDQAEKLVAAVEDACGFSGDGT 325
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
E+VLDLFCG GT+GL +A+ KHV+G+EVVP+A+ DA RNA+ N I+NATF +GDL K+
Sbjct: 326 EVVLDLFCGVGTLGLCVAKKAKHVFGWEVVPEAVKDAERNAEANGITNATFRRGDLAKLK 385
Query: 129 GDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVG 188
+ P PDIVI+DP R GM L+K L + A RIVYVSCNPAT ARDL L G G
Sbjct: 386 A----SLPGPDIVIADPARAGMDESLVKVLRSIGAERIVYVSCNPATQARDLLRLKGGDG 441
Query: 189 DQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ + Y ++ PVDMFPHTPH+E V +L+
Sbjct: 442 GEGAR--YDVRYCTPVDMFPHTPHVETVVVLD 471
>gi|303273590|ref|XP_003056155.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462239|gb|EEH59531.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 549
Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 106/219 (48%), Positives = 134/219 (61%), Gaps = 19/219 (8%)
Query: 20 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79
L+G + I+ TLRG+ F +S SFFQTNT QAE+L + +E+ L + +E +LDLFCG G
Sbjct: 320 LHGPATISITLRGVVFALSVKSFFQTNTKQAEILVESVEEACALTGENTETILDLFCGVG 379
Query: 80 TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD--------- 130
T GL LA +HVYG E+VP+A+ DA RNA N I NATF Q DL ++
Sbjct: 380 TFGLCLASKARHVYGCEIVPEAVEDAKRNAVANRIENATFWQADLAQLSESMLCADSKSM 439
Query: 131 -----FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCH 185
FG +PD+VI DP R GM + L+ L L PRIVYVSCNPAT ARD+ LC
Sbjct: 440 SKSIVFGKDVVRPDVVIVDPARSGMDVTLVAILRSLGIPRIVYVSCNPATQARDVALLCD 499
Query: 186 GVGDQNIKG----CYKLKSLQPVDMFPHTPHIECVCLLE 220
V D G Y+L S PVD+FPHTPH+E + +LE
Sbjct: 500 -VSDNTQSGDLLAKYRLISCIPVDLFPHTPHVENIVVLE 537
>gi|145340698|ref|XP_001415457.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575680|gb|ABO93749.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 536
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 144/233 (61%), Gaps = 20/233 (8%)
Query: 4 VNTSVGNTSVG---EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
V+TS G T+ ++ ++G++ + ETL G+ F++S+ SFFQTNT QA L + + +
Sbjct: 305 VHTSGGTTTKAGSTKKVEAVFGENKLVETLNGIDFELSSASFFQTNTEQAARLVRQVREA 364
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
D SEIVLDLFCG GT+GL++A V G+EVVP+A+ DA RNA+LNNI+NA F
Sbjct: 365 CAFSGDKSEIVLDLFCGVGTMGLSVASDCSRVMGWEVVPEAVKDAKRNAELNNITNAKFY 424
Query: 121 QGDLNKIGGD----------FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVS 170
+ DL ++ G P PDIVI+DP RPGM LI L + A RIVYVS
Sbjct: 425 RVDLARLNPSKGPKGLLTTPKGKELPMPDIVITDPARPGMDSALIAILRTIGARRIVYVS 484
Query: 171 CNPATCARDLDYL---CHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
CNPAT ARDL L G D Y+LK++ PVDMFPHT H+E V +LE
Sbjct: 485 CNPATQARDLLLLTAPSEGADDV----AYELKTVTPVDMFPHTTHVESVAVLE 533
>gi|194337875|ref|YP_002019669.1| TrmA family RNA methyltransferase [Pelodictyon phaeoclathratiforme
BU-1]
gi|194310352|gb|ACF45052.1| RNA methyltransferase, TrmA family [Pelodictyon phaeoclathratiforme
BU-1]
Length = 488
Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/222 (49%), Positives = 140/222 (63%), Gaps = 12/222 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNV + GE+E+TL G ITE L L F+ISANSFFQTN+ QAE+LY+ I +
Sbjct: 264 VNNVTERKNTVATGEKEFTLSGAGYITERLGALDFRISANSFFQTNSSQAELLYQSILEV 323
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGLR + V DL+CGTGTI L LA+ + V G EVV +I+DA NA N+I N F
Sbjct: 324 AGLR--AEDTVYDLYCGTGTITLYLAKHCRQVVGLEVVESSINDARSNAAFNSIDNVAFF 381
Query: 121 QGDLNKIGG--DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR 178
Q DL G D ++ P ++I+DP R GMH K + +L+L+ RI+YVSCNPA+ AR
Sbjct: 382 QVDLKDFQGMLDLLGSYDAPGVIITDPPRAGMHPKALSTMLRLRPRRIIYVSCNPASLAR 441
Query: 179 DLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
D +C ++G YKL S+QPVDMFPHT HIE V E
Sbjct: 442 DGKEIC-------LQG-YKLLSVQPVDMFPHTSHIESVACFE 475
>gi|78187968|ref|YP_376011.1| 23S rRNA methyltransferase [Chlorobium luteolum DSM 273]
gi|78167870|gb|ABB24968.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium luteolum DSM 273]
Length = 476
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 137/223 (61%), Gaps = 20/223 (8%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNV + +VGE EY + G ITE L L F+ISANSFFQTNT QAE LY I
Sbjct: 263 VNNVTSRPNTVAVGEHEYIVSGSGVITERLGELDFRISANSFFQTNTRQAEALYACILRA 322
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL+ + V DL+CGTGTI L +AR + G EVV +I DA NA+ N+I NA F
Sbjct: 323 AGLK--AEDTVYDLYCGTGTITLFMARHCRMAVGLEVVESSIQDARANAEFNSIRNAVFF 380
Query: 121 QGDLNKIGGDFGNAFP------KPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPA 174
Q DL DFG P +PD+V++DP R GMH K ++ +++L+A RI+YVSCNPA
Sbjct: 381 QADLK----DFGTLLPTLDSYGRPDVVVTDPPRAGMHPKALQAMVQLEARRIIYVSCNPA 436
Query: 175 TCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ RD G + Y+L+S++PVDMFPHT HIE V
Sbjct: 437 SLGRD--------GKEIAAAGYRLESVEPVDMFPHTAHIESVA 471
>gi|308798929|ref|XP_003074244.1| RNA methyltransferase family protein (ISS) [Ostreococcus tauri]
gi|116000416|emb|CAL50096.1| RNA methyltransferase family protein (ISS) [Ostreococcus tauri]
Length = 1009
Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats.
Identities = 106/213 (49%), Positives = 135/213 (63%), Gaps = 13/213 (6%)
Query: 19 TLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGT 78
TLYG++ I ETL G+ F++S+ SFFQTNT QA L + + G D SE VLDLFCG
Sbjct: 795 TLYGENKIVETLHGVKFELSSASFFQTNTEQAARLVREVVAGCGFAGDRSETVLDLFCGV 854
Query: 79 GTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF------- 131
GT+GL++A K V G+EVVP+A+ DA RNA++N I+NA F + DL+++
Sbjct: 855 GTMGLSVASNAKRVIGWEVVPEAVEDARRNAEINGITNADFYRVDLSRLNPSKGTKALLT 914
Query: 132 ---GNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCH-GV 187
G+ P PDIVI+DP RPGM LI L + A RIVYVSCNPAT ARDL +
Sbjct: 915 TPQGDVLPMPDIVITDPARPGMDASLIAILRTIGARRIVYVSCNPATQARDLALITAPSQ 974
Query: 188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G Q+ Y LK PVDMFPHT H+E V +L+
Sbjct: 975 GSQD--AAYVLKLCTPVDMFPHTAHVESVAVLD 1005
>gi|299820611|ref|ZP_07052501.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
gi|299818106|gb|EFI85340.1| 23S rRNA (uracil-5-)-methyltransferase [Listeria grayi DSM 20601]
Length = 460
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 139/222 (62%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N +GE TL+GK IT+T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 249 VQNINAAKTNVIMGETTRTLWGKEMITDTIHGIHFAISAKSFYQVNPEQTEVLYQEALDA 308
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G EIV+D +CG G+I L LA+ KHVYG E+VPQAI DA NA+LN + N TF
Sbjct: 309 AGLT--GDEIVIDAYCGIGSISLCLAKNAKHVYGVEIVPQAIIDAKANAQLNQLDNVTFE 366
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ ++ + K D+++ DP R G KL++ ++ +K ++VYVSCNPAT ARD+
Sbjct: 367 TGKAEEVIPNWYRSGIKADVLVVDPPRKGCDEKLLETIIDMKPKKVVYVSCNPATLARDM 426
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K++QPVDMFP T HIE V +LEL
Sbjct: 427 QILT--------AGGYTAKTVQPVDMFPMTNHIEAVTVLELQ 460
>gi|110598563|ref|ZP_01386831.1| RNA methyltransferase, TrmA family [Chlorobium ferrooxidans DSM
13031]
gi|110339797|gb|EAT58304.1| RNA methyltransferase, TrmA family [Chlorobium ferrooxidans DSM
13031]
Length = 480
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 136/224 (60%), Gaps = 12/224 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNV + + GEEE+ L G ITE L L F+ISANSFFQTN+ QAEVLY I D
Sbjct: 264 VNNVTSRKNGVATGEEEFLLSGTGIITERLGELDFRISANSFFQTNSRQAEVLYNAILDV 323
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL +D + V DL+CGTGTI L +A+ + G EVV +I+DA NA LN + NA F
Sbjct: 324 AGLNED--DTVYDLYCGTGTITLYMAKHCRSAVGLEVVESSINDARSNAALNGVENADFY 381
Query: 121 QGDLNKIGG--DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR 178
Q DL D + P ++I+DP R GMH K ++ +L+ + RIVYVSCNPA+ AR
Sbjct: 382 QVDLKDFHAILDKLESHGAPGVIITDPPRAGMHPKALETMLRFRPRRIVYVSCNPASLAR 441
Query: 179 DLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
D G + Y LKS+QPVDMFPHT HIE V EL
Sbjct: 442 D--------GKEIALQGYTLKSVQPVDMFPHTAHIESVACFELE 477
>gi|189347986|ref|YP_001944515.1| RNA methyltransferase, TrmA family [Chlorobium limicola DSM 245]
gi|189342133|gb|ACD91536.1| RNA methyltransferase, TrmA family [Chlorobium limicola DSM 245]
Length = 482
Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 139/226 (61%), Gaps = 20/226 (8%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNV T + GE+E+ +YG+ +TE L L F++SANSFFQTN+ QA VLY I
Sbjct: 266 VNNVTTKKNTVATGEQEFVVYGEGALTERLGELDFRVSANSFFQTNSSQAAVLYAEILKV 325
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AG+R D + V DL+CGTGTI L LAR + G EVV ++SDA +NA LN I+NA F
Sbjct: 326 AGIRPD--DTVYDLYCGTGTITLYLARHCRMAAGLEVVESSLSDAAKNADLNGITNAVFF 383
Query: 121 QGDLNKIGGDFGNAFPK------PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPA 174
Q DL DF K P ++++DP R GMH K ++ +LKL+A IVYVSCNP+
Sbjct: 384 QTDLK----DFHAMLQKLENYDAPGVIVTDPPRAGMHPKALETMLKLRARTIVYVSCNPS 439
Query: 175 TCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
ARD G + + Y+L S+QPVDMFPHT H+E V E
Sbjct: 440 NLARD--------GKEISRYGYRLVSVQPVDMFPHTVHVESVACFE 477
>gi|295114059|emb|CBL32696.1| 23S rRNA m(5)U-1939 methyltransferase [Enterococcus sp. 7L76]
Length = 457
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 137/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 244 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 304 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 362 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIECV LL
Sbjct: 422 ALLT--------EGGYEAKEIQPVDNFPQTTHIECVGLL 452
>gi|145220570|ref|YP_001131279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Chlorobium
phaeovibrioides DSM 265]
gi|145206734|gb|ABP37777.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium phaeovibrioides
DSM 265]
Length = 484
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 135/224 (60%), Gaps = 12/224 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNV + G+ EYT+ G I+E L L F+ISANSFFQTNT QAE LY I+D
Sbjct: 263 VNNVTNRRNTVATGDVEYTILGSGTISEKLGLLEFRISANSFFQTNTLQAEALYGRIQDA 322
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
LR + V DL+CGTGTI L LAR + G EVV +I DA NA+ N I NA F
Sbjct: 323 CELR--AGDRVYDLYCGTGTITLWLARHAERAIGLEVVESSIQDARSNAESNGIGNAYFF 380
Query: 121 QGDLNKIGG--DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR 178
Q DL +G + +PD++++DP R GMH K ++ +LKL A RIVYVSCNPA+ AR
Sbjct: 381 QTDLKDLGAMMERLEEHGRPDVIVTDPPRAGMHPKALETMLKLGARRIVYVSCNPASLAR 440
Query: 179 DLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
D G + Y+L S++PVDMFPHT HIE V + S
Sbjct: 441 D--------GKEIAGAGYRLVSVEPVDMFPHTAHIESVACFDYS 476
>gi|422727317|ref|ZP_16783759.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0312]
gi|315157726|gb|EFU01743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0312]
Length = 504
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 291 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 350
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 351 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 408
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 409 AGLAEELLPKLVEKGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 468
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 469 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 499
>gi|307289579|ref|ZP_07569523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0109]
gi|422703956|ref|ZP_16761772.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1302]
gi|306499393|gb|EFM68766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0109]
gi|315164578|gb|EFU08595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1302]
Length = 504
Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 291 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 350
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 351 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 408
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 409 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 468
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 469 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 499
>gi|227554844|ref|ZP_03984891.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis HH22]
gi|312900324|ref|ZP_07759635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0470]
gi|312904253|ref|ZP_07763415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0635]
gi|422688162|ref|ZP_16746321.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0630]
gi|422713668|ref|ZP_16770417.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309A]
gi|422716409|ref|ZP_16773116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309B]
gi|422721325|ref|ZP_16777917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0017]
gi|422736313|ref|ZP_16792577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1341]
gi|227176013|gb|EEI56985.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis HH22]
gi|310632349|gb|EFQ15632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0635]
gi|311292512|gb|EFQ71068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0470]
gi|315031445|gb|EFT43377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0017]
gi|315166923|gb|EFU10940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1341]
gi|315575356|gb|EFU87547.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309B]
gi|315578799|gb|EFU90990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0630]
gi|315581386|gb|EFU93577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0309A]
Length = 504
Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 291 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 350
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 351 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 408
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 409 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 468
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 469 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 499
>gi|307269782|ref|ZP_07551112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4248]
gi|307272542|ref|ZP_07553795.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0855]
gi|422709344|ref|ZP_16766800.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0027]
gi|422868001|ref|ZP_16914563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1467]
gi|306510827|gb|EFM79844.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0855]
gi|306513892|gb|EFM82494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4248]
gi|315036107|gb|EFT48039.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0027]
gi|329576886|gb|EGG58371.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1467]
Length = 468
Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 255 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 314
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 315 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 372
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 373 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 432
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 433 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 463
>gi|256854405|ref|ZP_05559769.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|384512429|ref|YP_005707522.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
OG1RF]
gi|422727951|ref|ZP_16784372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0012]
gi|256709965|gb|EEU25009.1| RNA methyltransferase [Enterococcus faecalis T8]
gi|315151570|gb|EFT95586.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0012]
gi|327534318|gb|AEA93152.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecalis
OG1RF]
Length = 468
Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 255 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 314
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 315 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 372
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 373 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 432
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 433 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 463
>gi|229546565|ref|ZP_04435290.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis TX1322]
gi|307274683|ref|ZP_07555855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2134]
gi|307284510|ref|ZP_07564672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0860]
gi|307296382|ref|ZP_07576206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0411]
gi|422686206|ref|ZP_16744412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4000]
gi|229308310|gb|EEN74297.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis TX1322]
gi|306496037|gb|EFM65622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0411]
gi|306503187|gb|EFM72441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0860]
gi|306508612|gb|EFM77710.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2134]
gi|315029097|gb|EFT41029.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4000]
Length = 504
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 291 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 350
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 351 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 408
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 409 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 468
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 469 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 499
>gi|229548674|ref|ZP_04437399.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis ATCC 29200]
gi|312953113|ref|ZP_07771962.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0102]
gi|422691255|ref|ZP_16749292.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0031]
gi|422695590|ref|ZP_16753569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4244]
gi|422705735|ref|ZP_16763528.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0043]
gi|229306190|gb|EEN72186.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis ATCC 29200]
gi|310628947|gb|EFQ12230.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0102]
gi|315146955|gb|EFT90971.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX4244]
gi|315153976|gb|EFT97992.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0031]
gi|315156740|gb|EFU00757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0043]
Length = 504
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 291 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 350
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 351 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 408
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 409 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 468
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 469 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 499
>gi|422699326|ref|ZP_16757197.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1346]
gi|315172186|gb|EFU16203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1346]
Length = 504
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 291 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 350
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 351 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 408
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 409 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 468
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 469 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 499
>gi|29375324|ref|NP_814478.1| RNA methyltransferase [Enterococcus faecalis V583]
gi|256617615|ref|ZP_05474461.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200]
gi|256761497|ref|ZP_05502077.1| RNA methyltransferase [Enterococcus faecalis T3]
gi|257089155|ref|ZP_05583516.1| RNA methyltransferase [Enterococcus faecalis CH188]
gi|257418339|ref|ZP_05595333.1| RNA methyltransferase trmA [Enterococcus faecalis T11]
gi|50401543|sp|Q837V0.1|Y728_ENTFA RecName: Full=Uncharacterized RNA methyltransferase EF_0728
gi|29342784|gb|AAO80548.1| RNA methyltransferase, TrmA family [Enterococcus faecalis V583]
gi|256597142|gb|EEU16318.1| RNA methyltransferase [Enterococcus faecalis ATCC 4200]
gi|256682748|gb|EEU22443.1| RNA methyltransferase [Enterococcus faecalis T3]
gi|256997967|gb|EEU84487.1| RNA methyltransferase [Enterococcus faecalis CH188]
gi|257160167|gb|EEU90127.1| RNA methyltransferase trmA [Enterococcus faecalis T11]
Length = 457
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 244 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 304 AALT--GNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 362 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 422 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 452
>gi|33355823|gb|AAQ16244.1| RNA methyl transferase-like [Enterococcus faecalis]
Length = 571
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 255 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 314
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 315 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 372
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 373 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 432
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 433 ALLT--------EGGYEAKEIQPVDNFPQTTHIETVVLL 463
>gi|256957402|ref|ZP_05561573.1| RNA methyltransferase [Enterococcus faecalis DS5]
gi|256964435|ref|ZP_05568606.1| RNA methyltransferase [Enterococcus faecalis HIP11704]
gi|257077602|ref|ZP_05571963.1| RNA methyltransferase [Enterococcus faecalis JH1]
gi|294779933|ref|ZP_06745314.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
PC1.1]
gi|397699125|ref|YP_006536913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
D32]
gi|256947898|gb|EEU64530.1| RNA methyltransferase [Enterococcus faecalis DS5]
gi|256954931|gb|EEU71563.1| RNA methyltransferase [Enterococcus faecalis HIP11704]
gi|256985632|gb|EEU72934.1| RNA methyltransferase [Enterococcus faecalis JH1]
gi|294452982|gb|EFG21403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
PC1.1]
gi|397335764|gb|AFO43436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
D32]
Length = 457
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 244 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 304 AALT--GNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 362 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 422 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 452
>gi|257420988|ref|ZP_05597978.1| RNA methyltransferase [Enterococcus faecalis X98]
gi|257162812|gb|EEU92772.1| RNA methyltransferase [Enterococcus faecalis X98]
Length = 457
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 244 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 304 AALT--GNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 362 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 422 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 452
>gi|257086087|ref|ZP_05580448.1| RNA methyltransferase [Enterococcus faecalis D6]
gi|256994117|gb|EEU81419.1| RNA methyltransferase [Enterococcus faecalis D6]
Length = 457
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 244 VQNVNPKRTNVIFGDETILLHGSKKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 304 AALT--GNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 362 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 422 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 452
>gi|422700753|ref|ZP_16758596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1342]
gi|315170705|gb|EFU14722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX1342]
Length = 468
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 255 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 314
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 315 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 372
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 373 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 432
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 433 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 463
>gi|422724282|ref|ZP_16780761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2137]
gi|424675593|ref|ZP_18112492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
599]
gi|315025773|gb|EFT37705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2137]
gi|402350858|gb|EJU85755.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
599]
Length = 504
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 291 VQNVNPKRTNVIFGDETILLHGSKKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 350
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 351 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 408
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 409 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 468
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 469 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 499
>gi|256959863|ref|ZP_05564034.1| RNA methyltransferase [Enterococcus faecalis Merz96]
gi|256950359|gb|EEU66991.1| RNA methyltransferase [Enterococcus faecalis Merz96]
Length = 457
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 244 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 304 AALT--GNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 362 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPKRIVYVSCNPATLARDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 422 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 452
>gi|255971187|ref|ZP_05421773.1| RNA methyltransferase [Enterococcus faecalis T1]
gi|255973811|ref|ZP_05424397.1| RNA methyltransferase [Enterococcus faecalis T2]
gi|257083655|ref|ZP_05578016.1| RNA methyltransferase [Enterococcus faecalis Fly1]
gi|384517791|ref|YP_005705096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
62]
gi|430360270|ref|ZP_19426193.1| RNA methyltransferase [Enterococcus faecalis OG1X]
gi|430368878|ref|ZP_19428425.1| RNA methyltransferase [Enterococcus faecalis M7]
gi|255962205|gb|EET94681.1| RNA methyltransferase [Enterococcus faecalis T1]
gi|255966683|gb|EET97305.1| RNA methyltransferase [Enterococcus faecalis T2]
gi|256991685|gb|EEU78987.1| RNA methyltransferase [Enterococcus faecalis Fly1]
gi|323479924|gb|ADX79363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
62]
gi|429512962|gb|ELA02556.1| RNA methyltransferase [Enterococcus faecalis OG1X]
gi|429516067|gb|ELA05564.1| RNA methyltransferase [Enterococcus faecalis M7]
Length = 457
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 244 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 304 AALT--GNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 362 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 422 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 452
>gi|257415298|ref|ZP_05592292.1| RNA methyltransferase [Enterococcus faecalis ARO1/DG]
gi|257157126|gb|EEU87086.1| RNA methyltransferase [Enterococcus faecalis ARO1/DG]
Length = 457
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 244 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 304 AALT--GNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 362 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 422 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 452
>gi|293385052|ref|ZP_06630886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R712]
gi|293389323|ref|ZP_06633784.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
S613]
gi|312906041|ref|ZP_07765054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 512]
gi|312909387|ref|ZP_07768243.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 516]
gi|291077730|gb|EFE15094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R712]
gi|291081345|gb|EFE18308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
S613]
gi|310628036|gb|EFQ11319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 512]
gi|311290411|gb|EFQ68967.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
DAPTO 516]
Length = 504
Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 291 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 350
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 351 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 408
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 409 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPKRIVYVSCNPATLARDI 468
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 469 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 499
>gi|194335110|ref|YP_002016970.1| RNA methyltransferase, TrmA family [Prosthecochloris aestuarii DSM
271]
gi|194312928|gb|ACF47323.1| RNA methyltransferase, TrmA family [Prosthecochloris aestuarii DSM
271]
Length = 478
Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/223 (47%), Positives = 133/223 (59%), Gaps = 20/223 (8%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNV T S GE+EY +YG + E L L F+ISANSFFQTNT QAE LY+ I
Sbjct: 264 VNNVTTRKNTVSTGEKEYVVYGDGTLRERLGDLHFRISANSFFQTNTRQAEALYEGIMRM 323
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL+ D ++V DL+CGTGTI L LA + G EVV +I DA NA N I NA F
Sbjct: 324 AGLKQD--DVVYDLYCGTGTITLYLAERCRQAVGLEVVESSIIDAAENAGANGIENAAFY 381
Query: 121 QGDLNKIGGDFGNAFPK------PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPA 174
Q DL DF P P ++++DP R GMH K ++ LL+L+ IVYVSCNPA
Sbjct: 382 QVDLK----DFHTLVPTLEQYGMPRVIVTDPPRAGMHPKALETLLRLQPETIVYVSCNPA 437
Query: 175 TCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
ARD G + ++ Y+L+ +QPVDMFPHT H+E +
Sbjct: 438 NLARD--------GKEIVQQGYRLEEVQPVDMFPHTSHVETLA 472
>gi|257080993|ref|ZP_05575354.1| RNA methyltransferase [Enterococcus faecalis E1Sol]
gi|256989023|gb|EEU76325.1| RNA methyltransferase [Enterococcus faecalis E1Sol]
Length = 457
Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 244 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K +YG EV+ +A+ DA NAKLNNI NATF
Sbjct: 304 AALT--GNEIVVDAYCGIGTIGLTLAQDAKQIYGIEVIEEAVKDAENNAKLNNIENATFT 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 362 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 422 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 452
>gi|424760382|ref|ZP_18188010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R508]
gi|402403633|gb|EJV36294.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
R508]
Length = 504
Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 135/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 291 VQNVNPKRTNVIFGNETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 350
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 351 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 408
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 409 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 468
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 469 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 499
>gi|340356361|ref|ZP_08679010.1| 23S rRNA (uracil-5-)-methyltransferase [Sporosarcina newyorkensis
2681]
gi|339621454|gb|EGQ26012.1| 23S rRNA (uracil-5-)-methyltransferase [Sporosarcina newyorkensis
2681]
Length = 455
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 134/222 (60%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+NT+ N +G E LYG I + + + F+ISA SF+Q N Q EVLY+ D
Sbjct: 243 MQNINTANTNVIMGNETINLYGADVIIDRIGDIEFEISARSFYQVNPVQTEVLYQQALDY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E V+D +CG GTI L LA+ K VYG E+VPQAI DA RNA+LN I+N F
Sbjct: 303 AGLT--GDETVIDAYCGIGTISLFLAKQAKEVYGVEIVPQAIQDAKRNAELNGITNTHFE 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + + D+++ DP R G KL++ +LK K ++VYVSCNP T ARDL
Sbjct: 361 AGAAEDVIPKWYAEGKRFDVLVVDPPRKGCDEKLLETILKYKPGKVVYVSCNPGTLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y+ K +QPVDMFPH+ H+ECV LL+LS
Sbjct: 421 RILE--------DGGYRTKEVQPVDMFPHSSHVECVALLDLS 454
>gi|422732009|ref|ZP_16788355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0645]
gi|422738857|ref|ZP_16794043.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2141]
gi|315145231|gb|EFT89247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX2141]
gi|315161930|gb|EFU05947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TX0645]
Length = 468
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 135/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 255 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 314
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGL LA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 315 AAL--TGNEIVVDAYCGIGTIGLNLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 372
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 373 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 432
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 433 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 463
>gi|189501463|ref|YP_001960933.1| RNA methyltransferase, TrmA family [Chlorobium phaeobacteroides
BS1]
gi|189496904|gb|ACE05452.1| RNA methyltransferase, TrmA family [Chlorobium phaeobacteroides
BS1]
Length = 480
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 133/219 (60%), Gaps = 12/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNV T +VGE+E+ ++G+ I E L L F+ISANSFFQTNT QAE LY I
Sbjct: 266 VNNVTTRKNTVAVGEKEFVVHGEGVIQERLGDLQFRISANSFFQTNTKQAEALYDGIMQM 325
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGLR D + V DL+CGTGTI L LA + G E+V ++SDA NA N I+NA+F
Sbjct: 326 AGLRKD--DTVYDLYCGTGTITLYLAERCRQAVGLEIVESSLSDAAENASRNGIANASFY 383
Query: 121 QGDLNKIGGDFG--NAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR 178
+ DL G F P ++++DP R GMH K +K +++L+ IVYVSCNPA AR
Sbjct: 384 RVDLKDFHTLLGTLEEFGFPRVIVTDPPRAGMHPKALKTMVRLQPETIVYVSCNPANLAR 443
Query: 179 DLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
D +C Y+L+ +QPVDMFPHT HIE +
Sbjct: 444 DGKEIC--------AANYRLEEVQPVDMFPHTSHIETLA 474
>gi|300861732|ref|ZP_07107812.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TUSoD Ef11]
gi|428766255|ref|YP_007152366.1| RNA methyltransferase, TrmA family [Enterococcus faecalis str.
Symbioflor 1]
gi|300848257|gb|EFK76014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
TUSoD Ef11]
gi|427184428|emb|CCO71652.1| RNA methyltransferase, TrmA family [Enterococcus faecalis str.
Symbioflor 1]
Length = 457
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 135/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G+E L+G IT+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 244 VQNVNPKRTNVIFGDETILLHGSEKITDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGL LA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 304 AALT--GNEIVVDAYCGIGTIGLNLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 362 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 422 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 452
>gi|427383048|ref|ZP_18879768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
oleiciplenus YIT 12058]
gi|425728962|gb|EKU91815.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
oleiciplenus YIT 12058]
Length = 457
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 137/219 (62%), Gaps = 12/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T + YT GK +I E + GL F++ SF+QTN+ QA LYK+ + AGL
Sbjct: 246 INNKRNDTVTDLDVYTFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIAREFAGL 305
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI +++ + V G E VP+AI DA NA++N I N F GD
Sbjct: 306 --TGEELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGD 363
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 364 MKDILTQDFINEYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQL 423
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L ++K YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 424 L-------DVK--YKVKAVQPVDMFPHTHHVENVVLLEL 453
>gi|224539551|ref|ZP_03680090.1| hypothetical protein BACCELL_04456 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518832|gb|EEF87937.1| hypothetical protein BACCELL_04456 [Bacteroides cellulosilyticus
DSM 14838]
Length = 476
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 138/219 (63%), Gaps = 12/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T + YT GK +I E + GL F+I SF+QTN+ QA LYK+ + AGL
Sbjct: 265 INNKRNDTITDLDVYTFKGKDHIFEEMEGLRFKIGPKSFYQTNSEQAYNLYKIARNFAGL 324
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI +++ + V G E VP+AI DA NA++N I N F GD
Sbjct: 325 --TGKELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGD 382
Query: 124 L-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + + DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 383 MKDMLTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQL 442
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L ++K YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 443 L-------DVK--YKVKAIQPVDMFPHTHHVENVVLLEL 472
>gi|423225091|ref|ZP_17211558.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
cellulosilyticus CL02T12C19]
gi|392633547|gb|EIY27489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
cellulosilyticus CL02T12C19]
Length = 458
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 138/219 (63%), Gaps = 12/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T + YT GK +I E + GL F+I SF+QTN+ QA LYK+ + AGL
Sbjct: 247 INNKRNDTITDLDVYTFKGKDHIFEEMEGLRFKIGPKSFYQTNSEQAYNLYKIARNFAGL 306
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI +++ + V G E VP+AI DA NA++N I N F GD
Sbjct: 307 --TGKELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGD 364
Query: 124 L-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + + DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 365 MKDMLTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQL 424
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L ++K YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 425 L-------DVK--YKVKAIQPVDMFPHTHHVENVVLLEL 454
>gi|398815374|ref|ZP_10574044.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
BC25]
gi|398034956|gb|EJL28211.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
BC25]
Length = 460
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 137/218 (62%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
NVNT + G++ +L+GK++I E L L+F +SA +FFQ N Q + LY ++ A
Sbjct: 251 QNVNTQKTSLVFGDKTVSLWGKASIAEKLGELSFDLSARAFFQLNPEQTQKLYNQVKTAA 310
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E+VLDL+CGTGTIGL LA + + V G E++P+A+ DA RNA+ N +NA+F
Sbjct: 311 GL--TGKELVLDLYCGTGTIGLWLAPYAREVRGIELIPEAVEDANRNAERNQAANASFHV 368
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + +PD+V+ DP R G+ LI+ LL ++ +IVYVSCNP+T A+D+
Sbjct: 369 GRAEVLMPKWAKQGTRPDVVVVDPPRTGLDDALIRSLLDVQPKKIVYVSCNPSTLAKDVG 428
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+LKS+QPVDMFPHT H+E V +L
Sbjct: 429 KLMQR---------YELKSVQPVDMFPHTAHVESVAVL 457
>gi|418636768|ref|ZP_13199107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
lugdunensis VCU139]
gi|374840464|gb|EHS03957.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
lugdunensis VCU139]
Length = 461
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 131/218 (60%), Gaps = 11/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S N +G++ TLYGK I + L +TF+IS SF+Q N+ Q E LY+ D A
Sbjct: 250 NINNSHSNVIMGQQSVTLYGKDKIVDQLSDITFKISDQSFYQINSSQTEKLYQKAIDYAQ 309
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L DG EIVLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N++ N TFV G
Sbjct: 310 L--DGQEIVLDTYCGIGTIGLYMAPVAKHVYGVEVVPSAIKDARQNALVNDLHNTTFVCG 367
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ D+ +PD+V+ DP R G + I+ LL L RIVY+SCNP+T RD
Sbjct: 368 KAEDVIMDWQREGIQPDVVMVDPPRKGCEAQFIQTLLDLNPERIVYISCNPSTQQRD--- 424
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
H + Q Y LK + PVDMFP T HIE V L +
Sbjct: 425 -AHMLATQ-----YDLKEITPVDMFPQTTHIETVALFK 456
>gi|390955554|ref|YP_006419312.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aequorivita
sublithincola DSM 14238]
gi|390421540|gb|AFL82297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aequorivita
sublithincola DSM 14238]
Length = 469
Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 136/219 (62%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTL-YGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V S GN ++ ++E L YG+ +I E + GL F+I+A SF+QTN+ QA LYK+ D AG
Sbjct: 260 VINSKGNDTLYDQEIELFYGRDHIFEEMEGLKFKINAKSFYQTNSEQAYELYKITRDFAG 319
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+V DL+ GTGTI +A+ K V G E VP AI A NA+LNNI N F G
Sbjct: 320 L--SGNELVYDLYTGTGTIAQFVAKNAKKVIGVESVPDAIEAAKANAQLNNIENVEFYVG 377
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ K+ +F N KPDIVI+DP R GMH ++ LL L A +IVYVSCN AT ARDL
Sbjct: 378 DMKKVFNEEFINTHGKPDIVITDPPRDGMHGDVVAQLLNLAAEKIVYVSCNSATQARDLA 437
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YK+ +QPVDMFP T H+E V LLE
Sbjct: 438 LL---------DSKYKVTRVQPVDMFPQTHHVENVVLLE 467
>gi|424682604|ref|ZP_18119369.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV129]
gi|402366820|gb|EJV01179.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV129]
Length = 595
Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 134/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G E L+G T+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 291 VQNVNPKRTNVIFGNETILLHGSEKNTDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 350
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 351 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 408
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 409 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 468
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 469 ALLT--------EGGYEAKEIQPVDNFPQTTHIETVALL 499
>gi|289550385|ref|YP_003471289.1| RNA methyltransferase, TrmA family [Staphylococcus lugdunensis
HKU09-01]
gi|385784015|ref|YP_005760188.1| putative RNA methyltransferase [Staphylococcus lugdunensis N920143]
gi|418413691|ref|ZP_12986907.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|289179917|gb|ADC87162.1| RNA methyltransferase, TrmA family [Staphylococcus lugdunensis
HKU09-01]
gi|339894271|emb|CCB53540.1| putative RNA methyltransferase [Staphylococcus lugdunensis N920143]
gi|410877329|gb|EKS25221.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 461
Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 131/218 (60%), Gaps = 11/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S N +G++ TLYGK I + L +TF+IS SF+Q N+ Q E LY+ D A
Sbjct: 250 NINNSHSNVIMGQQSATLYGKDKIVDQLSDITFKISDQSFYQINSSQTEKLYQKAIDYAQ 309
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L DG EIVLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N++ N TFV G
Sbjct: 310 L--DGQEIVLDTYCGIGTIGLYMAPVAKHVYGVEVVPSAIKDARQNALVNDLHNTTFVCG 367
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ D+ +PD+V+ DP R G + I+ LL L RIVY+SCNP+T RD
Sbjct: 368 KAEDVIMDWQREGIQPDVVMVDPPRKGCEAQFIQTLLDLNPERIVYISCNPSTQQRD--- 424
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
H + Q Y LK + PVDMFP T HIE V L +
Sbjct: 425 -AHMLATQ-----YDLKEITPVDMFPQTTHIETVALFK 456
>gi|315660149|ref|ZP_07913006.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus lugdunensis
M23590]
gi|315494830|gb|EFU83168.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus lugdunensis
M23590]
Length = 456
Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 131/218 (60%), Gaps = 11/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S N +G++ TLYGK I + L +TF+IS SF+Q N+ Q E LY+ D A
Sbjct: 245 NINNSHSNVIMGQQSATLYGKDKIVDQLSDITFKISDQSFYQINSSQTEKLYQKAIDYAQ 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L DG EIVLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N++ N TFV G
Sbjct: 305 L--DGQEIVLDTYCGIGTIGLYIAPVAKHVYGVEVVPSAIKDARQNALVNDLHNTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ D+ +PD+V+ DP R G + I+ LL L RIVY+SCNP+T RD
Sbjct: 363 KAEDVIMDWQREGIQPDVVMVDPPRKGCEAQFIQTLLDLNPERIVYISCNPSTQQRD--- 419
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
H + Q Y LK + PVDMFP T HIE V L +
Sbjct: 420 -AHMLATQ-----YDLKEITPVDMFPQTTHIETVALFK 451
>gi|119358501|ref|YP_913145.1| RNA methyltransferase [Chlorobium phaeobacteroides DSM 266]
gi|119355850|gb|ABL66721.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium phaeobacteroides
DSM 266]
Length = 476
Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 135/222 (60%), Gaps = 12/222 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNV T ++GEEE+ + G ITE L L F ISANSFFQTN+ Q +LY I
Sbjct: 263 LNNVTTRKNTVALGEEEFLVAGDGFITERLGKLDFNISANSFFQTNSAQTVLLYDEILRV 322
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL D + V DLFCGTGTI L L+ + + V G EV +++DA +NA LN + F+
Sbjct: 323 AGL--DIGDTVYDLFCGTGTIALYLSDYCRQVIGLEVSESSVADARKNAALNQREHVLFM 380
Query: 121 QGDLN--KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR 178
Q DLN + D KP ++++DP R GMH K ++ ++++ +IVYVSCNPA+ AR
Sbjct: 381 QVDLNDHRAMVDALQRHDKPRVIVTDPPRAGMHPKALEVMVRIAPEKIVYVSCNPASLAR 440
Query: 179 DLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
D +C KG Y+L SLQPVDMFPHT HIE V E
Sbjct: 441 DGSEIC--------KGGYRLTSLQPVDMFPHTSHIESVACFE 474
>gi|332798852|ref|YP_004460351.1| TrmA family RNA methyltransferase [Tepidanaerobacter acetatoxydans
Re1]
gi|438001891|ref|YP_007271634.1| RNA methyltransferase, TrmA family [Tepidanaerobacter acetatoxydans
Re1]
gi|332696587|gb|AEE91044.1| RNA methyltransferase, TrmA family [Tepidanaerobacter acetatoxydans
Re1]
gi|432178685|emb|CCP25658.1| RNA methyltransferase, TrmA family [Tepidanaerobacter acetatoxydans
Re1]
Length = 460
Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 134/217 (61%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+NT N +GE+ TLYG I + + + F++S SFFQ N QAEVLY + + AG
Sbjct: 248 NINTKKTNVIMGEKNITLYGSPYIYDYIGDIKFRLSPLSFFQVNPIQAEVLYNKVLEYAG 307
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
+ D EIVLDL+CGTGTI L LA+ K YG E+V QA++DA NAK+N I+NA F++G
Sbjct: 308 ITQD--EIVLDLYCGTGTITLFLAQKAKKAYGIELVSQAVADARLNAKINGINNAEFIEG 365
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ KPDI++ DP R G K +K + K+ +I+YVSCNPAT ARDL Y
Sbjct: 366 AAEAVLPKMAEEGIKPDIIVVDPPRRGCDEKTLKTITKISPKKIIYVSCNPATLARDLRY 425
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L KG YK + QPVDMFP T H+ECV L+
Sbjct: 426 L-------EDKG-YKTQKAQPVDMFPQTSHVECVVLM 454
>gi|227517694|ref|ZP_03947743.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis TX0104]
gi|424677154|ref|ZP_18114014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV103]
gi|424681242|ref|ZP_18118033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV116]
gi|424688008|ref|ZP_18124625.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV25]
gi|424689980|ref|ZP_18126517.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV31]
gi|424694805|ref|ZP_18131193.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV37]
gi|424695913|ref|ZP_18132284.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV41]
gi|424702272|ref|ZP_18138434.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV62]
gi|424702509|ref|ZP_18138657.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV63]
gi|424706657|ref|ZP_18142659.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV65]
gi|424716695|ref|ZP_18145997.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV68]
gi|424720869|ref|ZP_18149968.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV72]
gi|424726758|ref|ZP_18155408.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV81]
gi|424742315|ref|ZP_18170638.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV85]
gi|424752471|ref|ZP_18180470.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV93]
gi|227074849|gb|EEI12812.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecalis TX0104]
gi|402351836|gb|EJU86708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV116]
gi|402355511|gb|EJU90284.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV103]
gi|402362206|gb|EJU96743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV25]
gi|402365483|gb|EJU99903.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV31]
gi|402369692|gb|EJV03963.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV37]
gi|402369836|gb|EJV04094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV62]
gi|402378906|gb|EJV12730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV41]
gi|402386891|gb|EJV20385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV63]
gi|402387170|gb|EJV20659.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV68]
gi|402387325|gb|EJV20806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV65]
gi|402392735|gb|EJV25979.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV72]
gi|402398638|gb|EJV31571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV81]
gi|402400618|gb|EJV33435.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV85]
gi|402404661|gb|EJV37278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecalis
ERV93]
Length = 504
Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 134/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G E L+G T+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 291 VQNVNPKRTNVIFGNETILLHGSEKNTDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 350
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 351 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 408
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 409 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 468
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 469 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 499
>gi|424725562|ref|ZP_18154252.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Enterococcus
faecalis ERV73]
gi|402391464|gb|EJV24768.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Enterococcus
faecalis ERV73]
Length = 402
Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 134/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G E L+G T+T+ L F+ISA SF+Q N Q EV+Y+ +++
Sbjct: 189 VQNVNPKRTNVIFGNETILLHGSEKNTDTIFDLKFEISARSFYQVNPQQTEVMYQKVKEY 248
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTIGLTLA+ K VYG EV+ +A+ DA NAKLNNI NATF
Sbjct: 249 AAL--TGNEIVVDAYCGIGTIGLTLAQDAKQVYGIEVIEEAVKDAENNAKLNNIENATFT 306
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ +PD+V+ DP R G+ +L+ L++ + RIVYVSCNPAT ARD+
Sbjct: 307 AGLAEELLPKLVENGLQPDVVVVDPPRKGLDGQLVNTLIETQPERIVYVSCNPATLARDI 366
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVD FP T HIE V LL
Sbjct: 367 ALLT--------EGGYEAKEIQPVDNFPQTTHIESVTLL 397
>gi|149372775|ref|ZP_01891796.1| putative RNA methyltransferase [unidentified eubacterium SCB49]
gi|149354472|gb|EDM43037.1| putative RNA methyltransferase [unidentified eubacterium SCB49]
Length = 469
Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 137/214 (64%), Gaps = 13/214 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
GN ++ +++ Y G+ +I E + GLTF+I+A SF+QTN+ QA LYK+ D AGL G
Sbjct: 265 GNDTIYDQDVLCYAGEDHIMEEMEGLTFKINAKSFYQTNSEQAFELYKITRDFAGLT--G 322
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
E+V DL+ GTGTI +A+ K V G E VP AI A NA+ NNI+NA F GD+ +
Sbjct: 323 EELVYDLYTGTGTIAQFVAKKAKKVIGVESVPDAIIAAKENAERNNITNAEFYVGDMKDV 382
Query: 128 -GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
DF N K DIVI+DP R GMH +++ L+ L AP+IVYVSCN AT ARDL L
Sbjct: 383 FNEDFVNTHGKADIVITDPPRDGMHKDVVQQLINLNAPKIVYVSCNSATQARDLALL--- 439
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
D+N YK+ +QPVDMFP T H+E V LLE
Sbjct: 440 --DEN----YKVTKVQPVDMFPQTHHVENVVLLE 467
>gi|116747738|ref|YP_844425.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB]
gi|116696802|gb|ABK15990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Syntrophobacter
fumaroxidans MPOB]
Length = 488
Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 137/224 (61%), Gaps = 16/224 (7%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+++V+ + G++ + G I E L GL F+ISA SFFQTN AE LY +
Sbjct: 274 VHSVSRKKAQVAFGDQSRVVAGPGVIEERLGGLRFRISAESFFQTNPFSAEKLYDEVSRL 333
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A + G+E V DL+CGTG+I L++A V V G+EVV QAI DAC NA+LN I NA F+
Sbjct: 334 AAFQ--GTETVWDLYCGTGSIALSVAPRVARVVGFEVVDQAIEDACVNARLNGIENARFI 391
Query: 121 QGDL----NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATC 176
GDL N G G+ PDIVI+DP R GMH +++ LL++ RI+YVSCNPAT
Sbjct: 392 SGDLKERINHARGP-GSGEHHPDIVITDPPRAGMHPQVVGALLEMGPGRIIYVSCNPATL 450
Query: 177 ARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
ARDL + Y++ +++P D+FPHTPHIECV ++
Sbjct: 451 ARDLAFFTER---------YEIGTVRPFDLFPHTPHIECVVRMD 485
>gi|329964803|ref|ZP_08301826.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fluxus YIT
12057]
gi|328524654|gb|EGF51717.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fluxus YIT
12057]
Length = 511
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 137/220 (62%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T + YT GK +I E + GL F+I SF+QTN+ QA LYK+ + AGL
Sbjct: 300 INNKCNDTITDLDVYTFKGKDHIFEEMEGLRFKIGPKSFYQTNSEQAYNLYKIARNFAGL 359
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +++ + V G E VP+AI DA NA++N I N F GD
Sbjct: 360 --TGNELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIHNTLFFAGD 417
Query: 124 L-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + + DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 418 MKDMLTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL-- 475
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
Q + YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 476 -------QLLDTKYKVKAVQPVDMFPHTHHVENVVLLELK 508
>gi|423306367|ref|ZP_17284366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides uniformis
CL03T00C23]
gi|423309083|ref|ZP_17287073.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides uniformis
CL03T12C37]
gi|392679102|gb|EIY72495.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides uniformis
CL03T00C23]
gi|392685822|gb|EIY79133.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides uniformis
CL03T12C37]
Length = 473
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 137/220 (62%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T E +T GK +I E + GL F++ SF+QTN+ QA LYK+ + AGL
Sbjct: 264 INNKCNDTITDLEVHTFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVARNFAGL 323
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +++ + V G E VP+AI DA NA++N I N F GD
Sbjct: 324 --TGNELVYDLYTGTGTIANFVSKHARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGD 381
Query: 124 L-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + + DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 382 MKDMLTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL-- 439
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
Q + YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 440 -------QLLDAKYKVKAVQPVDMFPHTHHVENVVLLELK 472
>gi|160889893|ref|ZP_02070896.1| hypothetical protein BACUNI_02324 [Bacteroides uniformis ATCC 8492]
gi|156860885|gb|EDO54316.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides uniformis
ATCC 8492]
Length = 473
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 137/220 (62%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T E +T GK +I E + GL F++ SF+QTN+ QA LYK+ + AGL
Sbjct: 264 INNKCNDTITDLEVHTFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVARNFAGL 323
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +++ + V G E VP+AI DA NA++N I N F GD
Sbjct: 324 --TGNELVYDLYTGTGTIANFVSKHARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGD 381
Query: 124 L-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + + DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 382 MKDMLTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL-- 439
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
Q + YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 440 -------QLLDAKYKVKAVQPVDMFPHTHHVENVVLLELK 472
>gi|270294142|ref|ZP_06200344.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D20]
gi|317478899|ref|ZP_07938047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
4_1_36]
gi|270275609|gb|EFA21469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D20]
gi|316904933|gb|EFV26739.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
4_1_36]
Length = 473
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 137/220 (62%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T E +T GK +I E + GL F++ SF+QTN+ QA LYK+ + AGL
Sbjct: 264 INNKCNDTITDLEVHTFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVARNFAGL 323
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +++ + V G E VP+AI DA NA++N I N F GD
Sbjct: 324 --TGNELVYDLYTGTGTIANFVSKHARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGD 381
Query: 124 L-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + + DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 382 MKDMLTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL-- 439
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
Q + YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 440 -------QLLDAKYKVKAVQPVDMFPHTHHVENVVLLELK 472
>gi|347534735|ref|YP_004841405.1| RNA methyltransferase [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504791|gb|AEN99473.1| Uncharacterized RNA methyltransferase [Lactobacillus
sanfranciscensis TMW 1.1304]
Length = 458
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 134/223 (60%), Gaps = 11/223 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+NT GN +G++ + L GK+ I + L G F IS SF+Q N Q E LYKL +
Sbjct: 246 MMNINTGKGNKLMGDKNFMLEGKNYIMDQLMGTKFMISPLSFYQVNPFQTEKLYKLAIEK 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D +CG GTI L +A VKHVYG +VV +AI DA NAKLN+I NATFV
Sbjct: 306 AKLTKD--DIVIDAYCGIGTISLAMAPNVKHVYGVDVVKEAIEDARTNAKLNHIDNATFV 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K + KPD+++ DP R GM I+ +LK+K R+VYVSCNPAT RD
Sbjct: 364 VGKAEKQMKQWAEDGIKPDVIVVDPPRKGMDESFIETVLKMKPERLVYVSCNPATLVRDA 423
Query: 181 DYLCHGVGDQNIKGCYKL-KSLQPVDMFPHTPHIECVCLLELS 222
L +G YK+ + +QPVD FP TPH+E + + S
Sbjct: 424 KLLE--------EGGYKINQPVQPVDQFPQTPHVESITVFSRS 458
>gi|193215656|ref|YP_001996855.1| RNA methyltransferase, TrmA family [Chloroherpeton thalassium ATCC
35110]
gi|193089133|gb|ACF14408.1| RNA methyltransferase, TrmA family [Chloroherpeton thalassium ATCC
35110]
Length = 475
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 135/226 (59%), Gaps = 19/226 (8%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NN++T + GEEE+ + GK +ITETL F ISANSFFQTN+ Q LY+ +
Sbjct: 261 VNNISTKKNTVAFGEEEFCVIGKGHITETLGNYAFDISANSFFQTNSAQTLNLYQKTREF 320
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV DL+CGTG+I + ++ + V G E+V AI DA +NA+ N++ N F
Sbjct: 321 AKLSQD--DIVYDLYCGTGSISIFISDACQKVLGIELVDSAIEDAKKNAERNDVKNCAFR 378
Query: 121 QGDLNKIGGDFGN------AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPA 174
DL DFG AF PD+VI+DP R GMH K ++ LL+L RIVYVSCNPA
Sbjct: 379 MLDLK----DFGKISPELEAFGLPDVVITDPPRAGMHPKAVQMLLRLSPKRIVYVSCNPA 434
Query: 175 TCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ ARD C G Y+L QPVDMFPHT HIE V + E
Sbjct: 435 SLARDGQLFCEN-------GEYQLLEAQPVDMFPHTNHIESVAVFE 473
>gi|374709061|ref|ZP_09713495.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Sporolactobacillus
inulinus CASD]
Length = 457
Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 133/221 (60%), Gaps = 10/221 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+NT N G E TL+G+ I + + +TF ISA SFFQ N Q +VLY + A
Sbjct: 247 QNINTKRTNAIFGNETKTLWGRDTIYDQIGDVTFAISARSFFQVNPTQTDVLYGKALEYA 306
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E+V+D +CG GTI L LA+ KHVYG E+VP+AI DA +NA++N I+NATF
Sbjct: 307 GL--TGKEMVIDAYCGIGTISLFLAKQAKHVYGVEIVPEAIEDARKNAEINKITNATFEA 364
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + +PD+++ DP R G LI ++ ++ RIVYVSCNPAT ARDL
Sbjct: 365 GKSEDVIPKWRDQGIEPDVIVVDPPRKGCDASLIDTMIAMQPQRIVYVSCNPATLARDLK 424
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G +++K +QPVDMFP T H+E V L L
Sbjct: 425 LLT--------AGGFEIKKVQPVDMFPQTMHVELVVQLILK 457
>gi|189466070|ref|ZP_03014855.1| hypothetical protein BACINT_02440 [Bacteroides intestinalis DSM
17393]
gi|189434334|gb|EDV03319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
intestinalis DSM 17393]
Length = 476
Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 138/219 (63%), Gaps = 12/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T + +T GK +I E + GL F+I SF+QTN+ QA LYK+ + AGL
Sbjct: 265 INNKRNDTITDLDVHTFKGKDHIFEEMEGLRFKIGPKSFYQTNSEQAYNLYKIARNFAGL 324
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI +++ + V G E VP+AI DA NA++N I N F GD
Sbjct: 325 --TGKELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIENTLFFAGD 382
Query: 124 L-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + + DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 383 MKDMLTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQL 442
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L ++K YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 443 L-------DVK--YKVKAVQPVDMFPHTHHVENVVLLEL 472
>gi|21672850|ref|NP_660915.1| RNA methyltransferase [Chlorobium tepidum TLS]
gi|50401598|sp|Q8KGF9.1|Y009_CHLTE RecName: Full=Uncharacterized RNA methyltransferase CT0009
gi|21645898|gb|AAM71257.1| RNA methyltransferase, TrmA family [Chlorobium tepidum TLS]
Length = 483
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 128/222 (57%), Gaps = 12/222 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNV T + GE+EY + G +TE L L F+ISANSFFQTNT QAE LY I
Sbjct: 269 LNNVTTRKNTVATGEQEYVISGDGYVTERLGDLDFRISANSFFQTNTRQAETLYDQIIAV 328
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G+ + + V DL+CGTGTI L LAR K G EVV A+ DA NA+LN +SN F
Sbjct: 329 GGITPE--DTVYDLYCGTGTITLYLARHCKQAIGIEVVESAVKDAEMNAELNGLSNTVFF 386
Query: 121 QGDLNKIGG--DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR 178
Q DL + + KP I+++DP R GMH K + +LKL+ RIVYVSCNP AR
Sbjct: 387 QADLKNFHAMQEALEPYAKPRIIVTDPPRAGMHPKALDTMLKLQPERIVYVSCNPDNLAR 446
Query: 179 DLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
D G + Y++ S QPVDMFP T HIE V E
Sbjct: 447 D--------GKEIAARGYRMTSAQPVDMFPQTNHIETVACFE 480
>gi|226310579|ref|YP_002770473.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC
100599]
gi|226093527|dbj|BAH41969.1| probable 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus
brevis NBRC 100599]
Length = 460
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 136/220 (61%), Gaps = 11/220 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
NVN + G++ +L+GK++I E L L+F +SA +FFQ N Q + LYK ++ A
Sbjct: 251 QNVNNQKTSLVFGDKTVSLWGKASIAEKLGELSFDLSARAFFQLNPEQTQKLYKQVKTAA 310
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E+VLDL+CGTGTIGL LA + + V G E++P+A+ DA RNA+ N +NA+F
Sbjct: 311 GL--TGKELVLDLYCGTGTIGLWLAPYAREVRGIELIPEAVEDANRNAERNQAANASFHV 368
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + +PD+V+ DP R G+ LI+ LL + +IVYVSCNP+T A+D+
Sbjct: 369 GRAEVLMPKWAKQGTRPDVVVVDPPRTGLDDALIRSLLDVLPKKIVYVSCNPSTLAKDVG 428
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L Y+L S+QPVDMFPHT H+E V LL L
Sbjct: 429 KLMQR---------YELVSVQPVDMFPHTAHVESVTLLTL 459
>gi|299146119|ref|ZP_07039187.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
3_1_23]
gi|298516610|gb|EFI40491.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
3_1_23]
Length = 472
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 136/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 266 NKCNDTINDLDV----HVFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVAREFA 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I NA F
Sbjct: 322 GL--TGNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYA 379
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF N +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDILTQDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 440 QLLDEK---------YKVKAIQPVDMFPHTHHVENVVLLEL 471
>gi|375087252|ref|ZP_09733634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megamonas funiformis
YIT 11815]
gi|374562069|gb|EHR33404.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megamonas funiformis
YIT 11815]
Length = 457
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N +G+E L+G S+IT+ L L F+ISA SFFQ NT QAE LY+
Sbjct: 246 IQNINTGRNNIIMGKECKILWGASHITDRLGSLKFKISALSFFQVNTEQAEKLYECALKY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CGTGTI L LA+ K VYG E+VP+AI DA NA+ NNI NA F+
Sbjct: 306 ANL--TGKETVIDGYCGTGTISLFLAQKAKKVYGMEIVPEAIRDAIANARDNNIRNAEFL 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD K+ +PD++++DP R G +++K ++ RIVYVSCNPA+ ARD+
Sbjct: 364 TGDAAKLMPQLYRKGLRPDVIVTDPPRAGCAPEVLKTFAAMRPKRIVYVSCNPASLARDI 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
G+ D+ YK +QPVDMFP T H+E VCLL
Sbjct: 424 -----GILDE---LGYKATEIQPVDMFPQTGHVESVCLL 454
>gi|383111633|ref|ZP_09932442.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D2]
gi|382949255|gb|EFS33488.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D2]
Length = 462
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 136/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 256 NKCNDTINDLDV----HVFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVAREFA 311
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I NA F
Sbjct: 312 GLT--GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKINAEINDIKNALFYA 369
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF N +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 370 GDMKDILTQDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 429
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 430 QLLDEK---------YKVKAIQPVDMFPHTHHVENVVLLEL 461
>gi|298385356|ref|ZP_06994914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
1_1_14]
gi|298261497|gb|EFI04363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
1_1_14]
Length = 472
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 137/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK ++ E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 266 NKCNDTINDLDV----HVFKGKDHMFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIAREFA 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E+V DL+ GTGTI ++R + V G E VP+AI DA NAK+N I NA F
Sbjct: 322 GL--TGKELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAKINEIKNALFYA 379
Query: 122 GDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + +F N +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDMLTQEFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
Q + G YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 440 ---------QLLDGKYKVKAVQPVDMFPHTHHVENVVLLEL 471
>gi|160884289|ref|ZP_02065292.1| hypothetical protein BACOVA_02267 [Bacteroides ovatus ATCC 8483]
gi|156110028|gb|EDO11773.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus
ATCC 8483]
Length = 472
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 136/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 266 NKCNDTINDLDV----HVFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVAREFA 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I NA F
Sbjct: 322 GLT--GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYA 379
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF N +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDILTQDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 440 QLLDEK---------YKVKAIQPVDMFPHTHHVENVVLLEL 471
>gi|291532749|emb|CBL05862.1| 23S rRNA m(5)U-1939 methyltransferase [Megamonas hypermegale
ART12/1]
Length = 373
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N +G+E L+G S+IT+ L L F+ISA SFFQ NT QAE LY+
Sbjct: 139 VQNINTGRNNIIMGKECKILWGASHITDRLGSLKFKISALSFFQVNTEQAEKLYECALKY 198
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CGTGTI L LA+ K VYG E+VP+AI DA NA+ NNI NA F+
Sbjct: 199 ANL--TGKETVIDGYCGTGTISLFLAQKAKKVYGMEIVPEAIRDAIANARDNNIRNAEFL 256
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD K+ +PD++++DP R G +++K ++ RIVYVSCNPA+ ARD+
Sbjct: 257 TGDAAKLMPQLYRKGLRPDVIVTDPPRAGCAPEVLKTFAAMRPKRIVYVSCNPASLARDI 316
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
G+ D+ YK +QPVDMFP T H+E VCLL
Sbjct: 317 -----GILDE---LGYKATEIQPVDMFPQTGHVESVCLL 347
>gi|336413706|ref|ZP_08594055.1| hypothetical protein HMPREF1017_01163 [Bacteroides ovatus
3_8_47FAA]
gi|423286366|ref|ZP_17265217.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus
CL02T12C04]
gi|335934723|gb|EGM96706.1| hypothetical protein HMPREF1017_01163 [Bacteroides ovatus
3_8_47FAA]
gi|392675053|gb|EIY68495.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus
CL02T12C04]
Length = 462
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 136/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 256 NKCNDTINDLDV----HVFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVAREFA 311
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I NA F
Sbjct: 312 GLT--GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYA 369
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF N +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 370 GDMKDILTQDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 429
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 430 QLLDEK---------YKVKAIQPVDMFPHTHHVENVVLLEL 461
>gi|255691623|ref|ZP_05415298.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii
DSM 17565]
gi|260622692|gb|EEX45563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii
DSM 17565]
Length = 472
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 138/221 (62%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 266 NKCNDTINDLDV----HVFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVAREFA 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I NA F
Sbjct: 322 GL--TGNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYA 379
Query: 122 GDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + DF N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDMLTQDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
Q + YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 440 ---------QLLDKKYKVKAVQPVDMFPHTHHVENVVLLEL 471
>gi|329955143|ref|ZP_08296100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides clarus YIT
12056]
gi|328526142|gb|EGF53161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides clarus YIT
12056]
Length = 475
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 137/220 (62%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T + +T GK +I E + GL F++ SF+QTN+ QA LYK+ + AGL
Sbjct: 264 INNKCNDTITDLDVHTFKGKDHIFEEMEGLRFKVGPKSFYQTNSKQAYNLYKVARNFAGL 323
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +++ + V G E VP+AI DA NA++N I N F GD
Sbjct: 324 --TGNELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGD 381
Query: 124 L-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + + DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 382 MKDMLTQDFINEYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL-- 439
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
Q + YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 440 -------QLLDAKYKVKAVQPVDMFPHTHHVENVVLLELK 472
>gi|262406440|ref|ZP_06082989.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
2_1_22]
gi|294643718|ref|ZP_06721518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
CC 2a]
gi|294807326|ref|ZP_06766138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
xylanisolvens SD CC 1b]
gi|262355143|gb|EEZ04234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
2_1_22]
gi|292640956|gb|EFF59174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
CC 2a]
gi|294445456|gb|EFG14111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
xylanisolvens SD CC 1b]
Length = 472
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 137/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 266 NKCNDTINDLDV----HVFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIARNFA 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I NA F
Sbjct: 322 GL--TGNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYA 379
Query: 122 GDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + DF N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDMLTQDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 440 QLLDEK---------YKVKAVQPVDMFPHTHHVENVVLLEL 471
>gi|125974255|ref|YP_001038165.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
gi|125714480|gb|ABN52972.1| RNA methyltransferase, TrmA family [Clostridium thermocellum ATCC
27405]
Length = 453
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 131/218 (60%), Gaps = 10/218 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVNT N +G+E +YG+ IT+ + F IS SFFQ N Q EVLY+ D A
Sbjct: 244 NVNTKRTNVILGDENIVVYGRDTITDYIGEFKFNISPLSFFQVNPVQTEVLYRKALDYAQ 303
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V DL+CG GTI L L++ K +YG EVV A+ DA NAK+N + NA F+ G
Sbjct: 304 L--TGKETVFDLYCGIGTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVG 361
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K+ + + D+V+ DP R G ++K L+ +K RIVYVSCNPAT ARDL Y
Sbjct: 362 EAEKVIPEMYEKGVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLARDLKY 421
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G ++++ +QPVDMFP T H+ECV L+E
Sbjct: 422 LA--------EGGFEVREVQPVDMFPWTYHVECVALIE 451
>gi|345509990|ref|ZP_08789568.1| RNA methyltransferase [Bacteroides sp. D1]
gi|229445343|gb|EEO51134.1| RNA methyltransferase [Bacteroides sp. D1]
Length = 462
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 137/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 256 NKCNDTINDLDV----HVFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIARNFA 311
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I NA F
Sbjct: 312 GLT--GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYA 369
Query: 122 GDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + DF N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 370 GDMKDMLTQDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDL 429
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 430 QLLDEK---------YKVKAVQPVDMFPHTHHVENVVLLEL 461
>gi|336405270|ref|ZP_08585950.1| hypothetical protein HMPREF0127_03263 [Bacteroides sp. 1_1_30]
gi|335938082|gb|EGM99973.1| hypothetical protein HMPREF0127_03263 [Bacteroides sp. 1_1_30]
Length = 462
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 137/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 256 NKCNDTINDLDV----HVFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIARNFA 311
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I NA F
Sbjct: 312 GLT--GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYA 369
Query: 122 GDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + DF N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 370 GDMKDMLTQDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDL 429
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 430 QLLDEK---------YKVKAVQPVDMFPHTHHVENVVLLEL 461
>gi|218130910|ref|ZP_03459714.1| hypothetical protein BACEGG_02505 [Bacteroides eggerthii DSM 20697]
gi|317476221|ref|ZP_07935472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides eggerthii
1_2_48FAA]
gi|217987254|gb|EEC53585.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides eggerthii
DSM 20697]
gi|316907632|gb|EFV29335.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides eggerthii
1_2_48FAA]
Length = 475
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 137/220 (62%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T + +T GK +I E + GL F+I SF+QTN+ QA LYK+ + AGL
Sbjct: 264 INNKCNDTITDLDVHTFKGKDHIFEEMEGLRFKIGPKSFYQTNSEQAYNLYKVARNFAGL 323
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +++ + V G E VP+AI DA N+++N I N F GD
Sbjct: 324 --TGNELVYDLYTGTGTIANFVSKQARQVIGIEYVPEAIEDAKVNSEINGIQNTLFFAGD 381
Query: 124 L-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + + DF N + +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 382 MKDMLTQDFINEYGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDL-- 439
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
Q + YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 440 -------QLLDAKYKVKAVQPVDMFPHTHHVENVVLLELK 472
>gi|423300200|ref|ZP_17278225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii
CL09T03C10]
gi|408474009|gb|EKJ92531.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii
CL09T03C10]
Length = 462
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 137/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 256 NKCNDTINDLDV----HVFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVAREFA 311
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I NA F
Sbjct: 312 GLT--GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYA 369
Query: 122 GDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + DF N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 370 GDMKDMLTQDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDL 429
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 430 QLLDEK---------YKVKAVQPVDMFPHTHHVENVVLLEL 461
>gi|408419696|ref|YP_006761110.1| 23S rRNA mehtyltransferase RumA [Desulfobacula toluolica Tol2]
gi|405106909|emb|CCK80406.1| RumA: predicted 23S rRNA mehtyltransferase [Desulfobacula toluolica
Tol2]
Length = 462
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 131/219 (59%), Gaps = 14/219 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
MNN+ + S+G+EE LYGK +I E L F+IS NSFFQTNT E LY + +
Sbjct: 255 MNNITDAKSGVSIGKEEICLYGKDHIKERLGKFVFKISPNSFFQTNTRSCENLYAKVSEY 314
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+DL+ GTGTI + L+ K VYG E+V A+ DA NA+LN I N F
Sbjct: 315 AALT--GKETVIDLYSGTGTIPIWLSDQAKMVYGIEIVKSAVVDAKLNAQLNGIENCEFF 372
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+GD+ + KPD++I DP R GMH +++ +L + +IVYVSCNPAT ARDL
Sbjct: 373 EGDIKDVLPGLKQ---KPDVMIIDPPRVGMHKDVVQQVLYISPEKIVYVSCNPATLARDL 429
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ L Y +K +QPVDMFPHT HIE V LL
Sbjct: 430 EMLAPE---------YDIKEIQPVDMFPHTYHIESVALL 459
>gi|317127193|ref|YP_004093475.1| TrmA family RNA methyltransferase [Bacillus cellulosilyticus DSM
2522]
gi|315472141|gb|ADU28744.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM
2522]
Length = 457
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G++ L+G+ I +T+ + F ISA SF+Q N Q EVLY +
Sbjct: 245 VQNINPKRTNVIFGDKTEVLWGEEVIYDTIGDIKFAISARSFYQVNPTQTEVLYNKTLEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G+E V+D +CG GTI L LA+ KHVYG E+VP+AISDA +NA+LN I N F
Sbjct: 305 AGL--SGNETVIDAYCGIGTISLFLAQRAKHVYGVEIVPEAISDAKKNAQLNGIENVDFA 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ K+ + + D+++ DP R G +L++ ++K+K R+VYVSCNPAT ARDL
Sbjct: 363 VGEAEKVMPWWYAQGIRADVIVVDPPRKGCDEELLETIVKMKPARVVYVSCNPATLARDL 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
YL G G YK K +QPVDMFPHT H+E V ++
Sbjct: 423 KYL-EGRG-------YKTKEVQPVDMFPHTMHVETVTVI 453
>gi|423296153|ref|ZP_17274238.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus
CL03T12C18]
gi|392670763|gb|EIY64241.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus
CL03T12C18]
Length = 462
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 136/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 256 NKCNDTINDLDV----HVFKGKDHIFEEMEGLCFKVGPKSFYQTNSEQAYNLYKVAREFA 311
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I NA F
Sbjct: 312 GLT--GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYA 369
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF N +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 370 GDMKDILTQDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 429
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 430 QLLDEK---------YKVKAIQPVDMFPHTHHVENVVLLEL 461
>gi|319902370|ref|YP_004162098.1| 23S rRNA m(5)U-1939 methyltransferase [Bacteroides helcogenes P
36-108]
gi|319417401|gb|ADV44512.1| 23S rRNA m(5)U-1939 methyltransferase [Bacteroides helcogenes P
36-108]
Length = 475
Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 137/220 (62%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T + YT GK +I E + GL F++ SF+QTN+ QA LYK+ + AGL
Sbjct: 264 INNKCNDTITDLDVYTFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIARNFAGL 323
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI ++ + V G E VP+AI DA NA++N I N F GD
Sbjct: 324 --TGDELVYDLYTGTGTIANFVSGKARRVIGIEYVPEAIEDAKVNAEINGIKNTLFFAGD 381
Query: 124 L-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + + DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 382 MKDMLTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDLQL 441
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L ++K YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 442 L-------DVK--YKVKAVQPVDMFPHTHHVENVVLLELK 472
>gi|383122303|ref|ZP_09942997.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 1_1_6]
gi|251842610|gb|EES70690.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 1_1_6]
Length = 472
Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 137/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK ++ E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 266 NKCNDTINDLDV----HVFKGKDHMFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIAREFA 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N I NA F
Sbjct: 322 GL--TGKELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINEIKNALFYA 379
Query: 122 GDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + +F N +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDMLTQEFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
Q + G YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 440 ---------QLLDGKYKVKAVQPVDMFPHTHHVENVVLLEL 471
>gi|418575679|ref|ZP_13139828.1| putative RNA methyltransferase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|379325877|gb|EHY93006.1| putative RNA methyltransferase [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 458
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 131/219 (59%), Gaps = 11/219 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
NVN + N +G+ YTLYGK I +TL +TF+I+ SF+Q N+ Q E LY+ D A
Sbjct: 249 QNVNDTHSNVIMGQNSYTLYGKDEIVDTLSDVTFKINDQSFYQINSIQTEKLYQRAIDYA 308
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L+ G E VLD +CG GTIGL +A KHVYG EVVP+AI+DA +NA +N N TFV
Sbjct: 309 ELQ--GEETVLDTYCGIGTIGLYMAPKAKHVYGVEVVPEAITDAQQNATINQFENTTFVC 366
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + + +PD+V+ DP R G +K LL+L +IVY+SCNP+T RD
Sbjct: 367 GKAEEVILKWKSEGIRPDVVMVDPPRKGCDETFLKTLLELNPQKIVYISCNPSTQQRDAQ 426
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L + YKL + PVDMFPHT H+E V E
Sbjct: 427 LLANQ---------YKLTQITPVDMFPHTTHVETVAQFE 456
>gi|15613250|ref|NP_241553.1| RNA methyltransferase [Bacillus halodurans C-125]
gi|50401684|sp|Q9KF10.1|Y687_BACHD RecName: Full=Uncharacterized RNA methyltransferase BH0687
gi|10173301|dbj|BAB04406.1| RNA methyltransferase [Bacillus halodurans C-125]
Length = 458
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 132/222 (59%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ L+G+ I +T+ + F ISA SF+Q N Q +VLY +
Sbjct: 246 VQNVNPKRTNVIFGDKTKVLWGEEYIYDTIGDIKFAISARSFYQVNPEQTKVLYDQALEF 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L GSE V+D +CG GTI L LA+ KHVYG E+VP+AISDA RNA+LN +N F
Sbjct: 306 ANL--TGSETVIDAYCGIGTISLFLAQQAKHVYGVEIVPEAISDAKRNARLNGFANVQFA 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD K+ + + D+++ DP R G L+K +L +K R+VYVSCNPAT ARDL
Sbjct: 364 VGDAEKVMPWWYAQGVRADVIVVDPPRKGCDEALLKTILNMKPDRVVYVSCNPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y+ K +QPVDMFP T HIE V +LEL
Sbjct: 424 RVLE--------DGGYETKDVQPVDMFPWTTHIESVAVLELK 457
>gi|443242295|ref|YP_007375520.1| RNA methyltransferase [Nonlabens dokdonensis DSW-6]
gi|442799694|gb|AGC75499.1| RNA methyltransferase [Nonlabens dokdonensis DSW-6]
Length = 472
Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 134/219 (61%), Gaps = 12/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T ++ +G+ +I E + GL F+I+A SF+QTN+ QA LYK+ D AGL
Sbjct: 263 INEKANDTIYDQDVICYHGRDHIFEEMEGLQFKINAKSFYQTNSQQAYELYKITRDFAGL 322
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI +A+ KHV G E +P AI DA NA+ N I N TF GD
Sbjct: 323 --SGEELVYDLYTGTGTIAQFVAKKAKHVVGIEAIPVAIEDAKTNAQHNGIDNTTFFAGD 380
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ ++ +F + +PD+VI+DP R GMH ++ LL+L A +IVYVSCN AT ARDL
Sbjct: 381 MKEVFTQEFIDEHGQPDVVITDPPRDGMHKDVVAQLLQLSAKKIVYVSCNSATQARDLAL 440
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L Y++ +QPVDMFP T H+E V LLEL
Sbjct: 441 LNEK---------YEITKVQPVDMFPQTHHVENVVLLEL 470
>gi|389579882|ref|ZP_10169909.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfobacter
postgatei 2ac9]
gi|389401517|gb|EIM63739.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfobacter
postgatei 2ac9]
Length = 463
Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 133/219 (60%), Gaps = 14/219 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NN+ S S G+EE ++G+ ++ E L F+ISANSFFQTNT E LY + +
Sbjct: 255 VNNITDSRSGVSTGKEEILMHGEDHLIEQLGEYQFKISANSFFQTNTRACEKLYTKVSEY 314
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL DGS+ VLDL+ GTGTI + L+ K +YG E+V A+ DA N LN I+N TF+
Sbjct: 315 AGL--DGSQTVLDLYSGTGTIPIWLSGQAKKIYGIEIVHSAVVDARENVSLNGINNCTFL 372
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+GD+ + FG KPD++I DP R GMH ++ +L +IVYVSCNPAT ARDL
Sbjct: 373 EGDIKDV---FGQVPEKPDVIIIDPPRVGMHKDVVGHVLANSPGKIVYVSCNPATLARDL 429
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ L Y + + PVDMFPHT HIE V LL
Sbjct: 430 EMLA---------SRYAVVEVTPVDMFPHTYHIESVALL 459
>gi|193213715|ref|YP_001999668.1| RNA methyltransferase, TrmA family [Chlorobaculum parvum NCIB 8327]
gi|193087192|gb|ACF12468.1| RNA methyltransferase, TrmA family [Chlorobaculum parvum NCIB 8327]
Length = 479
Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 127/222 (57%), Gaps = 12/222 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNV T + GE+EY + G +TE L L F+ISANSFFQTNT QAE LY I
Sbjct: 265 LNNVTTRKNTVATGEQEYVISGDGYVTERLGDLDFRISANSFFQTNTRQAETLYDQIIAV 324
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ + + V DL+CGTGTI L LAR K G EVV A+ DA NA+LN +SN F
Sbjct: 325 GSITPE--DTVYDLYCGTGTITLYLARHCKQAIGIEVVESAVRDAQMNAELNGLSNTVFF 382
Query: 121 QGDLNKIGG--DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR 178
Q DL + + KP I+++DP R GMH K + +LKL+ RIVYVSCNP AR
Sbjct: 383 QADLKNFHAMQEALEPYAKPRIIVTDPPRAGMHPKALDTMLKLQPERIVYVSCNPDNLAR 442
Query: 179 DLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
D G + Y++ S QPVDMFP T HIE V E
Sbjct: 443 D--------GKEIAARGYRMTSAQPVDMFPQTNHIETVACFE 476
>gi|29346053|ref|NP_809556.1| RNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
gi|50401554|sp|Q8AA22.1|Y643_BACTN RecName: Full=Uncharacterized RNA methyltransferase BT_0643
gi|29337947|gb|AAO75750.1| RNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
Length = 454
Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 137/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK ++ E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 248 NKCNDTINDLDV----HVFKGKDHMFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIAREFA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N I NA F
Sbjct: 304 GL--TGKELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINEIKNALFYA 361
Query: 122 GDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + +F N +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 362 GDMKDMLTQEFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
Q + G YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 422 ---------QLLDGKYKVKAVQPVDMFPHTHHVENVVLLEL 453
>gi|237719530|ref|ZP_04550011.1| RNA methyltransferase [Bacteroides sp. 2_2_4]
gi|229451390|gb|EEO57181.1| RNA methyltransferase [Bacteroides sp. 2_2_4]
Length = 472
Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 135/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK +I E + GL F++ SF+QTN+ QA LYK+ +
Sbjct: 266 NKCNDTINDLDV----HVFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVAREFT 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I NA F
Sbjct: 322 GL--TGNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNALFYA 379
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF N +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDILTQDFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 440 QLLDEK---------YKVKAIQPVDMFPHTHHVENVVLLEL 471
>gi|307566456|ref|ZP_07628890.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella amnii CRIS
21A-A]
gi|307344844|gb|EFN90247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella amnii CRIS
21A-A]
Length = 476
Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 132/219 (60%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
VN GN + + + LY GK +I ET+ L F++ SF+QTNT QA LY + A
Sbjct: 265 VNNQKGNDTFNDLDLILYKGKDHIFETMEELNFKVGPKSFYQTNTEQAYHLYDVTRRFAN 324
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E+V DL+ GTGTI +A+ K V G E VP+AI DA N+K+NNI N F G
Sbjct: 325 L--TGKELVYDLYTGTGTIANFIAKKAKKVIGIEYVPEAIEDAKVNSKINNIENTLFYAG 382
Query: 123 DLNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I D F +PD++I+DP R GMH +I +L+ + RIVYVSCNPAT ARDL
Sbjct: 383 DMKNILTDRFVKEHGRPDVIITDPPRAGMHPDVINVILQARPKRIVYVSCNPATQARDLS 442
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YK+ ++QPVDMFPHTPH+E V LLE
Sbjct: 443 LL---------NTSYKIIAVQPVDMFPHTPHVENVVLLE 472
>gi|393784169|ref|ZP_10372336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides salyersiae
CL02T12C01]
gi|392666976|gb|EIY60488.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides salyersiae
CL02T12C01]
Length = 454
Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 138/221 (62%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V Y G +I E + GL F++ SF+QTN+ QA LYK+ D A
Sbjct: 248 NKCNDTINDLDV----YVFKGNDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIARDFA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N I N F
Sbjct: 304 GLT--GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINGIDNTLFFA 361
Query: 122 GDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + +F N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 362 GDMKDMLTQEFINEYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L ++K YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 422 QLL-------DVK--YKVKAVQPVDMFPHTHHVENVVLLEL 453
>gi|380695705|ref|ZP_09860564.1| RNA methyltransferase [Bacteroides faecis MAJ27]
Length = 472
Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 137/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 266 NKCNDTINDLDV----HVFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIAREFA 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N I N F
Sbjct: 322 GL--TGNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINEIKNTLFYA 379
Query: 122 GDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + +F N +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDMLTQEFINQHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
Q + G YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 440 ---------QLLDGKYKVKAVQPVDMFPHTHHVENVVLLEL 471
>gi|298481085|ref|ZP_06999279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D22]
gi|298272659|gb|EFI14226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D22]
Length = 472
Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 137/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 266 NKCNDTINDLDV----HVFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIARNFA 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I NA F
Sbjct: 322 GL--TGNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYA 379
Query: 122 GDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + DF N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDMLTQDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+K++QPVDMFPHT H+E V LL+L
Sbjct: 440 QLLNEK---------YKVKAVQPVDMFPHTHHVENVVLLKL 471
>gi|423213822|ref|ZP_17200351.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
xylanisolvens CL03T12C04]
gi|392693479|gb|EIY86711.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
xylanisolvens CL03T12C04]
Length = 462
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 137/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 256 NKCNDTINDLDV----HVFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIARNFA 311
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I NA F
Sbjct: 312 GLT--GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYA 369
Query: 122 GDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + DF N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 370 GDMKDMLTQDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDL 429
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+K++QPVDMFPHT H+E V LL+L
Sbjct: 430 QLLNEK---------YKVKAVQPVDMFPHTHHVENVVLLKL 461
>gi|456371251|gb|EMF50147.1| RNA methyltransferase, TrmA family [Streptococcus parauberis
KRS-02109]
Length = 452
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 133/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G+E TLYGK IT+++ G T++ISA SF+Q NT AE LY+ D
Sbjct: 240 MQNINDQNGNAIFGKEFRTLYGKDTITDSMLGNTYEISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D +IV+D + G GTIGL+ A+ VK VYG EV+ QA+ DA +NA+LN I N FV
Sbjct: 300 SNLTKD--DIVIDAYSGIGTIGLSFAKSVKKVYGVEVIEQAVLDARKNAELNGIKNVQFV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ P++++ DP R G+ I+ +++ +I YVSCNPAT ARD+
Sbjct: 358 TDIAEAAMEKWSKEGIHPNVILVDPPRKGLTESFIRASVEMNPEKITYVSCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y LK +QPVD+FP T H+ECVCLLE
Sbjct: 418 K-LYQELG-------YDLKKVQPVDLFPQTHHVECVCLLE 449
>gi|406659955|ref|ZP_11068091.1| putative RNA methyltransferase [Cecembia lonarensis LW9]
gi|405556358|gb|EKB51297.1| putative RNA methyltransferase [Cecembia lonarensis LW9]
Length = 468
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 132/220 (60%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN T +E T +G+ I E + GL FQ+ SF+QTN+ QA LYK+ + A L
Sbjct: 259 VNLKKNETFHDQEVITHHGRDFIEEEMEGLRFQVGPKSFYQTNSEQAYELYKVAREFASL 318
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
+G E+V DL+ GTGTI +A+ K V G E V AI+DA N+++N I N F GD
Sbjct: 319 --NGDEVVYDLYTGTGTIANFVAKRAKQVVGIEYVEAAIADAKINSQINGIENTLFYAGD 376
Query: 124 LNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I D F N PKPD+VI+DP R GMH ++K LL+L+AP+IVYVSCNPAT ARD+
Sbjct: 377 MKDILNDEFLNNHPKPDVVITDPPRAGMHEDVVKMLLRLEAPKIVYVSCNPATQARDIAL 436
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y++ +QPVDMFP T H+E V L L
Sbjct: 437 LSEK---------YQIDKIQPVDMFPQTYHVENVVRLILK 467
>gi|404330698|ref|ZP_10971146.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Sporolactobacillus
vineae DSM 21990 = SL153]
Length = 457
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 131/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N +G + TL+G+ I + + +TF ISA SF+Q N Q EVLY+
Sbjct: 244 VQNVNKRRTNAILGNKTKTLWGRPVIYDQIGSVTFAISAQSFYQVNPRQTEVLYRKALKF 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ K VYG E+VP+A+ DA NA+LN I+NA F
Sbjct: 304 ADL--TGEETVIDAYCGIGTISLFLAQKAKQVYGVEIVPEAVKDAQANAELNKITNAHFE 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G +I + + +PD+++ DP R G L+K +L +K RIVYVSCNPAT ARDL
Sbjct: 362 TGKAEEILPKWYDKGIRPDVIVVDPPRKGCEASLLKTMLAMKPQRIVYVSCNPATLARDL 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L + G Y +K +QPVDMFP T H+E V L+
Sbjct: 422 KLL--------VPGGYAIKKVQPVDMFPQTLHVETVALI 452
>gi|403046142|ref|ZP_10901616.1| RNA methyltransferase [Staphylococcus sp. OJ82]
gi|402764090|gb|EJX18178.1| RNA methyltransferase [Staphylococcus sp. OJ82]
Length = 453
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 132/219 (60%), Gaps = 11/219 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
+NVN + N +GE YTLYGK+ I +TL +TF+IS SF+Q N+ Q E LY+ + A
Sbjct: 244 HNVNDTHSNVIMGETSYTLYGKAEIQDTLSDVTFKISDQSFYQINSIQTEKLYQRAIEYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L+ G E +LD +CG GTIGL +A +HVYG E+VP+AI+DA +NA LN N TFV
Sbjct: 304 ELK--GEETILDTYCGIGTIGLYMAPKAQHVYGVEIVPEAIADAKQNATLNQFENTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + KPD+V+ DP R G ++ LL+L +IVY+SCNP+T RD
Sbjct: 362 GKAEEVILKWKAQGIKPDVVMVDPPRKGCDETFLETLLELNPRKIVYISCNPSTQQRDA- 420
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + YKL + PVDMFPHT H+E V E
Sbjct: 421 --------QQLAQRYKLTQITPVDMFPHTTHVETVAQFE 451
>gi|256003527|ref|ZP_05428517.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM
2360]
gi|281418309|ref|ZP_06249329.1| RNA methyltransferase, TrmA family [Clostridium thermocellum JW20]
gi|385779725|ref|YP_005688890.1| TrmA family RNA methyltransferase [Clostridium thermocellum DSM
1313]
gi|419722395|ref|ZP_14249539.1| RNA methyltransferase, TrmA family [Clostridium thermocellum AD2]
gi|419725901|ref|ZP_14252935.1| RNA methyltransferase, TrmA family [Clostridium thermocellum YS]
gi|255992551|gb|EEU02643.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM
2360]
gi|281409711|gb|EFB39969.1| RNA methyltransferase, TrmA family [Clostridium thermocellum JW20]
gi|316941405|gb|ADU75439.1| RNA methyltransferase, TrmA family [Clostridium thermocellum DSM
1313]
gi|380770677|gb|EIC04563.1| RNA methyltransferase, TrmA family [Clostridium thermocellum YS]
gi|380781580|gb|EIC11234.1| RNA methyltransferase, TrmA family [Clostridium thermocellum AD2]
Length = 455
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 130/217 (59%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVNT N +G+E +YG+ IT+ + F IS SFFQ N Q EVLY+ D A
Sbjct: 244 NVNTKRTNVILGDENIVVYGRDTITDYIGEFKFNISPLSFFQVNPVQTEVLYRKALDYAQ 303
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V DL+CG GTI L L++ K +YG EVV A+ DA NAK+N + NA F+ G
Sbjct: 304 L--TGKETVFDLYCGIGTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVG 361
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K+ + + D+V+ DP R G ++K L+ +K RIVYVSCNPAT ARDL Y
Sbjct: 362 EAEKVIPEMYEKGVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLARDLKY 421
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G ++++ +QPVDMFP T H+ECV L+
Sbjct: 422 LA--------EGGFEVREVQPVDMFPWTYHVECVVLM 450
>gi|333905283|ref|YP_004479154.1| RNA methyltransferase [Streptococcus parauberis KCTC 11537]
gi|333120548|gb|AEF25482.1| RNA methyltransferase [Streptococcus parauberis KCTC 11537]
Length = 452
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 138/221 (62%), Gaps = 12/221 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G+E TLYGK IT+++ G T++ISA SF+Q NT AE LY+ D
Sbjct: 240 MQNINDQNGNAIFGKEFRTLYGKDTITDSMLGNTYEISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D +IV+D + G GTIGL+ A+ VK VYG EV+ QA+ DA +NA+LN I N FV
Sbjct: 300 SNLTKD--DIVIDAYSGIGTIGLSFAKSVKKVYGVEVIEQAVLDARKNAELNGIKNVQFV 357
Query: 121 QGDLNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
D+ ++ + + P++++ DP R G+ I+ +++ +I YVSCNPAT ARD
Sbjct: 358 T-DIAEVAMEKWSKEGIHPNVILVDPPRKGLTESFIRASVEMNPEKITYVSCNPATMARD 416
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ L +G Y LK +QPVD+FP T H+ECVCLLE
Sbjct: 417 IK-LYQELG-------YDLKKVQPVDLFPQTHHVECVCLLE 449
>gi|336410158|ref|ZP_08590639.1| hypothetical protein HMPREF1018_02656 [Bacteroides sp. 2_1_56FAA]
gi|335945620|gb|EGN07430.1| hypothetical protein HMPREF1018_02656 [Bacteroides sp. 2_1_56FAA]
Length = 472
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 136/222 (61%), Gaps = 16/222 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + G +I E + GL F++ SF+QTN+ QA LYK+ D A
Sbjct: 266 NKCNDTINDLDV----HVFRGNDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVARDFA 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N I N F
Sbjct: 322 GLT--GDELVYDLYTGTGTIANFVSRQARKVIGIEYVPEAIEDAKVNAEINGIENTLFFA 379
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDILTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L ++K Y++K++QPVDMFPHT H+E V LLEL
Sbjct: 440 QLL-------DVK--YRVKAVQPVDMFPHTHHVENVVLLELK 472
>gi|375358840|ref|YP_005111612.1| putative RNA methyltransferase [Bacteroides fragilis 638R]
gi|301163521|emb|CBW23072.1| putative RNA methyltransferase [Bacteroides fragilis 638R]
Length = 472
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 136/222 (61%), Gaps = 16/222 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + G +I E + GL F++ SF+QTN+ QA LYK+ D A
Sbjct: 266 NKCNDTINDLDV----HVFRGNDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVARDFA 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N I N F
Sbjct: 322 GLT--GDELVYDLYTGTGTIANFVSRQARKVIGIEYVPEAIEDAKVNAEINGIENTLFFA 379
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDILTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L ++K Y++K++QPVDMFPHT H+E V LLEL
Sbjct: 440 QLL-------DVK--YRVKAVQPVDMFPHTHHVENVVLLELK 472
>gi|53713830|ref|YP_099822.1| RNA methyltransferase [Bacteroides fragilis YCH46]
gi|60682048|ref|YP_212192.1| RNA methyltransferase [Bacteroides fragilis NCTC 9343]
gi|265764175|ref|ZP_06092743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
2_1_16]
gi|383118758|ref|ZP_09939498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_2_5]
gi|423250343|ref|ZP_17231359.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL03T00C08]
gi|423255844|ref|ZP_17236773.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL03T12C07]
gi|423256983|ref|ZP_17237906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL07T00C01]
gi|423266051|ref|ZP_17245054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL07T12C05]
gi|423271713|ref|ZP_17250683.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL05T00C42]
gi|423276504|ref|ZP_17255445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL05T12C13]
gi|52216695|dbj|BAD49288.1| RNA methyltransferase [Bacteroides fragilis YCH46]
gi|60493482|emb|CAH08268.1| putative RNA methyltransferase [Bacteroides fragilis NCTC 9343]
gi|251946079|gb|EES86486.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_2_5]
gi|263256783|gb|EEZ28129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
2_1_16]
gi|387778459|gb|EIK40554.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL07T00C01]
gi|392649926|gb|EIY43598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL03T12C07]
gi|392652652|gb|EIY46310.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL03T00C08]
gi|392696569|gb|EIY89761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL05T00C42]
gi|392696816|gb|EIY90004.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL05T12C13]
gi|392701759|gb|EIY94913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL07T12C05]
Length = 472
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 136/222 (61%), Gaps = 16/222 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + G +I E + GL F++ SF+QTN+ QA LYK+ D A
Sbjct: 266 NKCNDTINDLDV----HVFRGNDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVARDFA 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N I N F
Sbjct: 322 GLT--GDELVYDLYTGTGTIANFVSRQARKVIGIEYVPEAIEDAKVNAEINGIENTLFFA 379
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDILTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L ++K Y++K++QPVDMFPHT H+E V LLEL
Sbjct: 440 QLL-------DVK--YRVKAVQPVDMFPHTHHVENVVLLELK 472
>gi|433542667|ref|ZP_20499091.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus agri
BAB-2500]
gi|432185984|gb|ELK43461.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus agri
BAB-2500]
Length = 464
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 132/218 (60%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
NVN + G++ ++L+G+ I E L L+F +SA +FFQ N Q + LY ++ A
Sbjct: 251 QNVNPQKTSLVFGDQTFSLWGRPAIAEKLGELSFDLSARAFFQLNPEQTKKLYNEVKKAA 310
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G E+VLDL+CGTGTIGL LA + V G E++P+A+ DA RNA N +NA+F
Sbjct: 311 AL--TGKELVLDLYCGTGTIGLWLAPHAREVRGIELIPEAVEDANRNAARNQATNASFHV 368
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + +PD+V+ DP R G+ LI+ LL ++ RIVYVSCNP+T A+D+
Sbjct: 369 GRAEVLMPKWAKQGTRPDVVVVDPPRTGLDDALIRSLLDVQPKRIVYVSCNPSTLAKDVA 428
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L S+QPVDMFPHT HIE VCLL
Sbjct: 429 KLLQR---------YELASVQPVDMFPHTTHIENVCLL 457
>gi|256419908|ref|YP_003120561.1| TrmA family RNA methyltransferase [Chitinophaga pinensis DSM 2588]
gi|256034816|gb|ACU58360.1| RNA methyltransferase, TrmA family [Chitinophaga pinensis DSM 2588]
Length = 472
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 137/218 (62%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N + +T E T +GK + E L TF+I SFFQTNT+Q E LY++ D AGL
Sbjct: 261 INPKLNDTIFDLEPKTYFGKGYVEEKLEDFTFKIGPKSFFQTNTYQGEALYQVTRDFAGL 320
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+EIV DL+CGTG+IG+ ++R V G E++ +AI DA NA NN++NA F GD
Sbjct: 321 --TGTEIVYDLYCGTGSIGIFVSRQAGKVVGIELIKEAIDDAIENAARNNVNNAQFYAGD 378
Query: 124 LNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I D F +PD+VI+DP R GMH KL+ LL++ APRIVYVSCNPAT ARDL
Sbjct: 379 VVDICNDAFFAQHGQPDVVITDPPRAGMHEKLVNKLLEIAAPRIVYVSCNPATQARDLAL 438
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Y +K +QPVDMFPHT HIE V LLE
Sbjct: 439 L---------DVMYSVKKIQPVDMFPHTHHIENVVLLE 467
>gi|149278953|ref|ZP_01885087.1| putative RNA methyltransferase [Pedobacter sp. BAL39]
gi|149230232|gb|EDM35617.1| putative RNA methyltransferase [Pedobacter sp. BAL39]
Length = 487
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 133/217 (61%), Gaps = 12/217 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T +E T G+ +I E + GL F+I A SF+QTN++QA LYK+ ++ AG
Sbjct: 266 LNQKKNDTIFDQEVLTYAGRDHIFEEMNGLKFKIGAKSFYQTNSNQAHELYKITKEFAGF 325
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ G GTI +AR VK V G E VP AI DA N+KLN I N F GD
Sbjct: 326 --SGDELVYDLYTGAGTIANFVARSVKQVVGVEYVPTAIEDAKFNSKLNGIENTIFYAGD 383
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I DF KPD+VI+DP R GMH +++ LL+++A +IVYVSCN AT ARDL
Sbjct: 384 MKDILTRDFIAEHGKPDVVITDPPRAGMHADVVERLLEMEAEKIVYVSCNAATQARDLAL 443
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L K Y++ ++PVDMFPHT H+E V LL
Sbjct: 444 L---------KEKYEVTRIKPVDMFPHTQHVENVVLL 471
>gi|229495436|ref|ZP_04389171.1| 23S rRNA-methyltransferase RumA [Porphyromonas endodontalis ATCC
35406]
gi|229317879|gb|EEN83777.1| 23S rRNA-methyltransferase RumA [Porphyromonas endodontalis ATCC
35406]
Length = 475
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 130/218 (59%), Gaps = 11/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+NT + +T T YG I E + GLTF+I SF+QTN+HQA LY++ AGL
Sbjct: 266 INTKLNDTFTDLSVETYYGSPFIEEEMEGLTFRIGPKSFYQTNSHQALELYRVARSFAGL 325
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G EIV DL+ GTGTI +AR K V G E +P+AI DA N+++N I N F GD
Sbjct: 326 --TGEEIVYDLYTGTGTIANFVARDAKKVVGIEYIPEAIEDAHLNSQVNKIDNTIFYAGD 383
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I + PD+VI+DP R GMH +IK LL PRIVYVSCNPAT ARD
Sbjct: 384 MKDILTPELIARHGAPDVVITDPPRAGMHPDVIKTLLGAAPPRIVYVSCNPATQARDAAL 443
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L ++G Y++ +QPVDMFPHT H+E V LLE
Sbjct: 444 L--------VEGGYRVLKVQPVDMFPHTHHVENVMLLE 473
>gi|392398405|ref|YP_006435006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flexibacter litoralis
DSM 6794]
gi|390529483|gb|AFM05213.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flexibacter litoralis
DSM 6794]
Length = 472
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 131/220 (59%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VNT +T + GK ITET+ GL F+I A SF+QTN+ QA LYK+ D A L
Sbjct: 264 VNTKRNDTFQDLDIVCFDGKDYITETMEGLEFRIQAKSFYQTNSIQAYNLYKITRDFAQL 323
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI +A+ K V G E V AI DA N+KLN I N F GD
Sbjct: 324 --TGEEVVYDLYTGTGTIANFVAKQAKQVIGVEYVEPAIEDAKINSKLNGIDNTLFYAGD 381
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + +F N +PD++++DP R GMH +I LL++ A RIVYVSCNPAT ARDL
Sbjct: 382 MKDVLNEEFLNKHARPDVILTDPPRAGMHPDVINMLLRIGAKRIVYVSCNPATQARDLQL 441
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y +K++QPVDMFP T H+E V LLEL
Sbjct: 442 LDEK---------YAVKAIQPVDMFPQTHHVENVVLLELK 472
>gi|392969916|ref|ZP_10335327.1| uncharacterized RNA methyltransferase [Staphylococcus equorum
subsp. equorum Mu2]
gi|392512063|emb|CCI58526.1| uncharacterized RNA methyltransferase [Staphylococcus equorum
subsp. equorum Mu2]
Length = 453
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 131/219 (59%), Gaps = 11/219 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
+NVN + N +GE YTLYGK I +TL +TF+IS SF+Q N+ Q E LY+ + A
Sbjct: 244 HNVNDTHSNVIMGETSYTLYGKDEIQDTLSDVTFKISDQSFYQINSIQTEKLYQRAIEYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L+ G E +LD +CG GTIGL +A +HVYG E+VP+AI+DA +NA LN N TFV
Sbjct: 304 ELK--GEETILDTYCGIGTIGLYMAPKAQHVYGVEIVPEAIADAKQNATLNQFENTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + KPD+V+ DP R G ++ LL+L +IVY+SCNP+T RD
Sbjct: 362 GKAEEVILKWKAQGIKPDVVMVDPPRKGCDETFLETLLELNPRKIVYISCNPSTQQRDA- 420
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + YKL + PVDMFPHT H+E V E
Sbjct: 421 --------QQLAQRYKLTQITPVDMFPHTTHVETVAQFE 451
>gi|325297416|ref|YP_004257333.1| RNA methyltransferase, TrmA family [Bacteroides salanitronis DSM
18170]
gi|324316969|gb|ADY34860.1| RNA methyltransferase, TrmA family [Bacteroides salanitronis DSM
18170]
Length = 474
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 136/220 (61%), Gaps = 16/220 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++G+ V GK +I E + GL F++ SF+QTN+ QA LYK+ D A
Sbjct: 266 NKCNDTIGDLDVC----VFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVARDFA 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R K V G E VP+AI DA N++LN I N F
Sbjct: 322 GL--TGNELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSELNGIKNTLFYA 379
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF +PD++I+DP R GMH +I+ +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDILTEDFIRTHGRPDVIITDPPRAGMHGDVIQVILAAEPERIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L ++K YK+K++QPVDMFPHT H+E V LLE
Sbjct: 440 QLL-------DVK--YKVKAVQPVDMFPHTHHVENVVLLE 470
>gi|298373691|ref|ZP_06983680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroidetes oral
taxon 274 str. F0058]
gi|298274743|gb|EFI16295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroidetes oral
taxon 274 str. F0058]
Length = 477
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/214 (46%), Positives = 132/214 (61%), Gaps = 13/214 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
N ++ +++ L+ G+ I E + GL F+I A SF+QTN+ QA LYK++ D A R D
Sbjct: 268 ANDTITDQKIELFDGREYIVEEMEGLRFKIGAKSFYQTNSRQAYNLYKVVRDFA--RIDD 325
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
+V DL+ GTGTI +AR K V G E VP+AI DA N+ +N I N F GD+ +
Sbjct: 326 RMLVYDLYTGTGTIANFVARKAKKVIGIEYVPEAIEDAKENSAINGIVNTEFFAGDMKDV 385
Query: 128 -GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
F + +PD++I+DP R GMH +IK +L APRIVYVSCNPAT ARDL
Sbjct: 386 LSQSFVDYHGQPDVIITDPPRAGMHEDVIKTILLASAPRIVYVSCNPATQARDL------ 439
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + YK+ ++QPVDMFPHT H+E V LLE
Sbjct: 440 ---QMLDADYKIVAVQPVDMFPHTHHVENVVLLE 470
>gi|403070842|ref|ZP_10912174.1| RNA methyltransferase [Oceanobacillus sp. Ndiop]
Length = 456
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 134/222 (60%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT + +GE+ L+G+ I + + +TF ISA SFFQ N Q + LY +
Sbjct: 245 VQNINTQRTSVILGEKTKVLWGEEYIYDKIGDITFAISAKSFFQVNPVQTKALYDKALEY 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A + D + V+D +CG GTI L LA+ K VYG EVVP+AI+DA NAKLN I+NA F
Sbjct: 305 AKIGKDDT--VIDAYCGIGTISLFLAQKAKKVYGIEVVPEAINDAKNNAKLNGITNAEFS 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ K+ D+ PD+++ DP R G + ++ +L ++ RIVYVSCNP+T ARDL
Sbjct: 363 VGEAEKVMPDWKEKGINPDVIVVDPPRKGCDVDFLQAMLDMQPKRIVYVSCNPSTLARDL 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y+ K +QPVDMFP TPH+E V LLEL
Sbjct: 423 RILE--------DGGYETKEVQPVDMFPQTPHVETVALLELK 456
>gi|418618812|ref|ZP_13181667.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
VCU122]
gi|374826691|gb|EHR90578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
VCU122]
Length = 454
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 129/219 (58%), Gaps = 11/219 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G++ TLYGK IT+ L F+IS SF+Q N+ Q E LY+ D A
Sbjct: 243 QNINNSHSNVIMGKQSMTLYGKDKITDQLSETIFEISDQSFYQINSVQTEKLYQKAIDYA 302
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+EIVLD +CG GTIGL +A KHVYG E+VP AI DA +NA +N+ N TF
Sbjct: 303 QL--SGNEIVLDTYCGIGTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFEC 360
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ ++ +PD+++ DP R G I+ LL+L RI+Y+SCNP+T RD
Sbjct: 361 GKAEEVIIEWKQKGIEPDVIMVDPPRKGCDQVFIETLLELAPKRIIYISCNPSTQQRDAQ 420
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+L Y LK + PVDMFPHT HIE V L E
Sbjct: 421 FLA---------NLYYLKEITPVDMFPHTTHIETVALFE 450
>gi|134300101|ref|YP_001113597.1| RNA methyltransferase [Desulfotomaculum reducens MI-1]
gi|134052801|gb|ABO50772.1| 23S rRNA m(5)U-1939 methyltransferase [Desulfotomaculum reducens
MI-1]
Length = 457
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 134/219 (61%), Gaps = 11/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + G +GEE +YGK I + L GL F ISANSF+Q NT Q E LY+ ++
Sbjct: 246 IRNINRNPGRIVLGEENRVMYGKEYIVDELNGLNFNISANSFYQVNTLQTEELYQKAKEF 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LAR V G E+VP A++DA NA+LN I+N F
Sbjct: 306 AQLQ--GHERVIDAYCGIGTIALYLARSTVEVVGMEIVPPAVADAKENARLNGITNTKFF 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
QG + K+ KPD+V+ DP R G +++ + + K PRIVYVSC+PAT ARDL
Sbjct: 364 QGAVEKLLPRMAKDL-KPDVVVLDPPRKGCEKEVLTAISESKVPRIVYVSCDPATLARDL 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
GV D K Y+ +QPVDMFP T H+ECV L+
Sbjct: 423 -----GVLD---KLGYQTLQVQPVDMFPWTYHVECVVLM 453
>gi|239638046|ref|ZP_04679005.1| 23S rRNA-methyltransferase RumA [Staphylococcus warneri L37603]
gi|239596329|gb|EEQ78867.1| 23S rRNA-methyltransferase RumA [Staphylococcus warneri L37603]
Length = 453
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 131/218 (60%), Gaps = 11/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N + N +G + TLYG+ I + L +TF IS SF+Q N+HQ E LY+ D A
Sbjct: 245 NINDAHSNVIMGHQSITLYGEEEIKDQLNEVTFNISDQSFYQINSHQTEKLYQQALDYAQ 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+EIVLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N N TFV G
Sbjct: 305 L--TGNEIVLDTYCGIGTIGLYMAENAKHVYGVEVVPSAIKDAKQNATINQFENTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ ++ + +PD+V+ DP R G ++ +L+L RIVY+SCNP+T RD
Sbjct: 363 KAEEVILEWKSEGIRPDVVMVDPPRKGCDETFLETILELNPKRIVYISCNPSTQQRD--- 419
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
H + Q Y+LK + PVDMFP T HIE V + E
Sbjct: 420 -AHILSRQ-----YELKEITPVDMFPQTTHIETVAIFE 451
>gi|73662203|ref|YP_300984.1| RNA methyltransferase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72494718|dbj|BAE18039.1| putative RNA methyltransferase [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 453
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 130/218 (59%), Gaps = 11/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVN + N +G+ YTLYGK I + L +TF+I+ SF+Q N+ Q E LY+ D A
Sbjct: 245 NVNDTHSNVIMGQNSYTLYGKDEIVDMLSDVTFKINDQSFYQINSIQTEKLYQRAIDYAE 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G E VLD +CG GTIGL +A KHVYG EVVP+AI+DA +NA +N N TFV G
Sbjct: 305 LQ--GEETVLDTYCGIGTIGLYMAPKAKHVYGVEVVPEAITDAQQNATINQFENTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + + +PD+V+ DP R G +K LL+L +IVY+SCNP+T RD
Sbjct: 363 KAEEVILKWKSEGIRPDVVMVDPPRKGCDETFLKTLLELNPQKIVYISCNPSTQQRDAQL 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L + YKL + PVDMFPHT H+E V E
Sbjct: 423 LANQ---------YKLTQITPVDMFPHTTHVETVAQFE 451
>gi|167762843|ref|ZP_02434970.1| hypothetical protein BACSTE_01201 [Bacteroides stercoris ATCC
43183]
gi|167699183|gb|EDS15762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides stercoris
ATCC 43183]
Length = 480
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 136/220 (61%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T + +T GK +I E + GL F++ SF+QTN+ QA LYK+ + AGL
Sbjct: 264 INNKCNDTITDLDVHTFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYTLYKVARNFAGL 323
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI ++ + V G E VP+AI DA N+++N I N F GD
Sbjct: 324 --TGNELVYDLYTGTGTIANFVSGQARQVIGIEYVPEAIEDAKVNSEINGIRNTLFFAGD 381
Query: 124 L-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + + DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 382 MKDMLTQDFINEYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL-- 439
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
Q + Y++K++QPVDMFPHT H+E V LLEL
Sbjct: 440 -------QLLDAKYRVKAVQPVDMFPHTHHVENVVLLELK 472
>gi|315641084|ref|ZP_07896163.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM
15952]
gi|315483092|gb|EFU73609.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus italicus DSM
15952]
Length = 465
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N +G LYGKS I + L G TF+ISA SF+Q NT QAE LY++ D
Sbjct: 252 IQNVNEEKTNVIMGPTNRVLYGKSYIEDQLLGKTFRISAQSFYQVNTEQAEKLYQVAMDF 311
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L + + V+D + G GTIGL+LA V HVYG E+V +A+ DA NA +N I+NAT++
Sbjct: 312 AQLSKNDT--VVDAYSGIGTIGLSLADKVDHVYGMEIVAEAVKDAQTNAAINGITNATYL 369
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+G KI + +P +V DP R G+ I +++ R+VY+SCNPAT ARD+
Sbjct: 370 EGKAEKIMHQWAREEVQPTVVFVDPPRKGLDASFIDATCEMQPERVVYISCNPATMARDV 429
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
KG Y+L+ +QPVD+FP T H+ECV LL
Sbjct: 430 KLFAE-------KG-YQLEKVQPVDLFPQTVHVECVGLL 460
>gi|89890519|ref|ZP_01202029.1| RNA methyltransferase [Flavobacteria bacterium BBFL7]
gi|89517434|gb|EAS20091.1| RNA methyltransferase [Flavobacteria bacterium BBFL7]
Length = 485
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 128/215 (59%), Gaps = 13/215 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
N ++ ++E Y G+ +I E + GL F+I+A SF+QTN+ QA LYK+ D AGL G
Sbjct: 280 ANDTIYDQEVICYDGRDHIFEEMEGLQFKINAKSFYQTNSKQAFELYKITRDFAGL--TG 337
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
E+V DL+ GTGTI +A+ HV G E VP AI DA NA N I N TF GD+ +
Sbjct: 338 EELVYDLYTGTGTIAQFVAKKANHVVGIESVPVAIEDAKANAAHNGIDNTTFFAGDMRDV 397
Query: 128 -GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
DF PD+VI+DP R GMH ++ LL L APRIVYVSCN AT ARDL L
Sbjct: 398 FTADFIAEHGAPDVVITDPPRDGMHKDVVAQLLALAAPRIVYVSCNSATQARDLALLNEQ 457
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
YK+ QPVDMFP T H+E V LLE+
Sbjct: 458 ---------YKVVKYQPVDMFPQTHHVESVVLLEI 483
>gi|423277588|ref|ZP_17256502.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
HMW 610]
gi|424663727|ref|ZP_18100764.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
HMW 616]
gi|404577417|gb|EKA82155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
HMW 616]
gi|404587337|gb|EKA91887.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
HMW 610]
Length = 472
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 136/222 (61%), Gaps = 16/222 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + G +I E + GL F++ SF+QTN+ QA LYK+ D A
Sbjct: 266 NKCNDTINDLDV----HVFRGNDHIFEEMEGLRFKVGPKSFYQTNSGQAYNLYKVARDFA 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N I N F
Sbjct: 322 GL--TGGELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINGIENTLFFA 379
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDILTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L ++K Y++K++QPVDMFPHT H+E V LLEL
Sbjct: 440 QLL-------DVK--YRVKAVQPVDMFPHTHHVENVVLLELK 472
>gi|313147266|ref|ZP_07809459.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313136033|gb|EFR53393.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 463
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 136/222 (61%), Gaps = 16/222 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + G +I E + GL F++ SF+QTN+ QA LYK+ D A
Sbjct: 257 NKCNDTINDLDV----HVFRGNDHIFEEMEGLRFKVGPKSFYQTNSGQAYNLYKVARDFA 312
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N I N F
Sbjct: 313 GLT--GGELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINGIENTLFFA 370
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 371 GDMKDILTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 430
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L ++K Y++K++QPVDMFPHT H+E V LLEL
Sbjct: 431 QLL-------DVK--YRVKAVQPVDMFPHTHHVENVVLLELK 463
>gi|322385303|ref|ZP_08058948.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus
ATCC 51100]
gi|417922035|ref|ZP_12565525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
cristatus ATCC 51100]
gi|321270562|gb|EFX53477.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus cristatus
ATCC 51100]
gi|342833920|gb|EGU68200.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
cristatus ATCC 51100]
Length = 453
Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 137/220 (62%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G E TLYG+ IT+++ G FQI+A +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQPGNAIFGREFRTLYGQDFITDSMLGKQFQIAAPAFYQVNTEMAEKLYQTAFDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A + + +IVLD + G GTIGL+LA V+ VYG EV+P+A+ ++ RNA+LN I++A++V
Sbjct: 300 ADFKKE--DIVLDAYSGIGTIGLSLADRVQQVYGVEVIPEAVENSQRNAELNGITSASYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + N K D+++ DP R G+ I + ++ RIVY+SCNPAT ARD+
Sbjct: 358 CAPAEKAIQTWLNQGVKADVILVDPPRKGLTESFITSSVSMEPQRIVYISCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L G G Y+LK +QPVD+FP T H+ECV LL+
Sbjct: 418 K-LYQGQG-------YELKKVQPVDLFPQTHHVECVVLLQ 449
>gi|224543217|ref|ZP_03683756.1| hypothetical protein CATMIT_02417 [Catenibacterium mitsuokai DSM
15897]
gi|224523850|gb|EEF92955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Catenibacterium
mitsuokai DSM 15897]
Length = 448
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 133/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +GEEE LYG+ I +TL G T++IS SF+Q N Q EVLY +
Sbjct: 238 IQNINPRHDNVILGEEEKVLYGEGYIEDTLLGNTYKISMKSFYQINPRQVEVLYSKAIEY 297
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A + +++V+D +CG GTI LTLA+ VK VYG EVVPQAI DA NA+ N+I+NA FV
Sbjct: 298 AKFK--PTDVVIDAYCGIGTISLTLAKHVKKVYGVEVVPQAIVDAKENAERNHITNAEFV 355
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
D +F K D V+ DP R G + ++ L L RIVY+SCN AT ARDL
Sbjct: 356 CDDAGHFMTEFVERNEKVDCVMVDPPRKGCSTEFLERLTTLSPERIVYISCNVATQARDL 415
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
YL ++ YK ++QPVDMFPHTPHIE + LL
Sbjct: 416 TYL--------VEKGYKPLNVQPVDMFPHTPHIENILLL 446
>gi|423218273|ref|ZP_17204769.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides caccae
CL03T12C61]
gi|392627776|gb|EIY21811.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides caccae
CL03T12C61]
Length = 462
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 134/221 (60%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V Y G +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 256 NKCNDTINDLDV----YVFKGNDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVTREFA 311
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I N F
Sbjct: 312 GLT--GNELVYDLYTGTGTIANFVSRRARQVIGIEYVPEAIEDAKVNAEINDIKNTLFYA 369
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I +F N +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 370 GDMKDILTQEFINEHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 429
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 430 QLLDEK---------YKVKAVQPVDMFPHTHHVENVVLLEL 461
>gi|373460446|ref|ZP_09552199.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella maculosa OT
289]
gi|371956093|gb|EHO73889.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella maculosa OT
289]
Length = 481
Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 132/219 (60%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + G+ E T + G I ET+ L F++ SF+QTNT QA LY + A
Sbjct: 270 VDNQKGNDTFGDLELTTFKGTDFIYETMEDLKFKVGPKSFYQTNTEQAYHLYSVPRKFAA 329
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E+V DL+ GTGTI +AR + V G E VP+AI DA N+K+NNI+N F G
Sbjct: 330 L--TGEELVYDLYTGTGTIANFVARRARRVIGIEYVPEAIEDAKENSKVNNIANTLFYAG 387
Query: 123 DLNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I D F +PD++I+DP R GMH +++ +L RIVYVSCNPAT ARDL
Sbjct: 388 DMKNILTDGFIAEHGRPDVIITDPPRAGMHPDVVRVILNAAPGRIVYVSCNPATQARDL- 446
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + YK+ ++QPVDMFPHTPH+E V LLE
Sbjct: 447 --------QLMDTAYKVTAVQPVDMFPHTPHVENVVLLE 477
>gi|70726057|ref|YP_252971.1| hypothetical protein SH1056 [Staphylococcus haemolyticus JCSC1435]
gi|68446781|dbj|BAE04365.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 454
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 126/219 (57%), Gaps = 11/219 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +GE+ TLYGK I + L TF+IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINKSHSNVIMGEQSVTLYGKDKIADQLSDTTFKISDQSFYQINSSQTEKLYQQAIEYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G E VLD +CG GTIGL +A KHVYG EVVP AI DA +NA LN N TFV
Sbjct: 304 QLT--GEETVLDTYCGIGTIGLYMAPVAKHVYGVEVVPSAIKDAQQNATLNGFENTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + KPD+V+ DP R G ++ LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEEVIIKWKQQGIKPDVVMVDPPRKGCDETFLQTLLKLNPKRIVYISCNPSTQQRDA- 420
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + Y+L+ + PVDMFP T H+E V L E
Sbjct: 421 --------QILDSQYELQEITPVDMFPQTTHVETVALFE 451
>gi|153806599|ref|ZP_01959267.1| hypothetical protein BACCAC_00869 [Bacteroides caccae ATCC 43185]
gi|149131276|gb|EDM22482.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides caccae
ATCC 43185]
Length = 456
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 135/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V Y G +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 250 NKCNDTINDLDV----YVFKGNDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVAREFA 305
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I N F
Sbjct: 306 GL--TGNELVYDLYTGTGTIANFVSRRARQVIGIEYVPEAIEDAKVNAEINDIKNTLFYA 363
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I +F N +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 364 GDMKDILTQEFINEHGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
Q + YK+K++QPVDMFPHT H+E V LLEL
Sbjct: 424 ---------QLLDEKYKVKAVQPVDMFPHTHHVENVVLLEL 455
>gi|423284063|ref|ZP_17262947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
HMW 615]
gi|404580609|gb|EKA85318.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
HMW 615]
Length = 472
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 135/222 (60%), Gaps = 16/222 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + G +I E + GL F++ SF+QTN+ Q LYK+ D A
Sbjct: 266 NKCNDTINDLDV----HVFRGNDHIFEEMEGLRFKVGPKSFYQTNSEQTYNLYKVARDFA 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N I N F
Sbjct: 322 GLT--GDELVYDLYTGTGTIANFVSRQARKVIGIEYVPEAIEDAKVNAEINGIENTLFFA 379
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDILTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L ++K Y++K++QPVDMFPHT H+E V LLEL
Sbjct: 440 QLL-------DVK--YRVKAVQPVDMFPHTHHVENVVLLELK 472
>gi|220930233|ref|YP_002507142.1| TrmA family RNA methyltransferase [Clostridium cellulolyticum H10]
gi|220000561|gb|ACL77162.1| RNA methyltransferase, TrmA family [Clostridium cellulolyticum H10]
Length = 460
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 135/218 (61%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVNT N +G + +YG+ IT+ + F+IS SFFQ N Q EVLY+ + AG
Sbjct: 249 NVNTKNTNIILGNKNICIYGQMYITDFIGSFKFEISPLSFFQVNPIQTEVLYEKALEYAG 308
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E V DL+CG GTI L L++ K V G EVVP AISDA RNA+LN I+N F+ G
Sbjct: 309 L--SGNETVFDLYCGIGTISLYLSQRAKRVIGVEVVPDAISDARRNAELNGITNVEFLVG 366
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K+ D + K D+V+ DP R G L+ L++++ RIVYVSCNP+T ARDL Y
Sbjct: 367 EAEKVIPDMYSQGVKADVVVVDPPRKGCDEVLLSTLVEMQPQRIVYVSCNPSTLARDLKY 426
Query: 183 LC-HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L HG +++K +QPVDMFP T H+ECV L+
Sbjct: 427 LTEHG---------FEVKEVQPVDMFPWTGHVECVVLM 455
>gi|223986649|ref|ZP_03636641.1| hypothetical protein HOLDEFILI_03963 [Holdemania filiformis DSM
12042]
gi|223961380|gb|EEF65900.1| hypothetical protein HOLDEFILI_03963 [Holdemania filiformis DSM
12042]
Length = 453
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 129/217 (59%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVN N +G+ E L+G ++I E L GL FQISA SF+Q N Q EVLY + AG
Sbjct: 243 NVNGREDNVILGDREIVLWGSASIEEELLGLRFQISAKSFYQINPVQTEVLYTKAIELAG 302
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V+D++CGTGTIGL+ AR K V G E+VP A+ DA RNA N I+NA F+ G
Sbjct: 303 L--TGEETVIDVYCGTGTIGLSAARKAKRVIGIEIVPSAVEDAKRNAVRNGIANAEFICG 360
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
D +PD+ I DP R G+ I L+K+ RIVYVSC+PAT ARD
Sbjct: 361 DAGVCTAQLLERRIQPDVAIVDPPRKGLDGTTIDSLVKMNPERIVYVSCDPATLARDCAV 420
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L N +G Y ++ +QPVDMFP T H+E V L+
Sbjct: 421 L-------NERG-YGVEVVQPVDMFPQTTHVETVVLM 449
>gi|256752392|ref|ZP_05493252.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
CCSD1]
gi|256748727|gb|EEU61771.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
CCSD1]
Length = 453
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 131/217 (60%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+NT N +GEE T+YG NI + ++ + F+IS SFFQ N Q EVLY + A
Sbjct: 243 NINTKKTNVIMGEENITIYGSDNIIDYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYAD 302
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G E V+D++CG GTI L A+ VYG E V QA+ DA RNA +N I N F+ G
Sbjct: 303 LK--GEETVIDVYCGIGTISLFAAQKAAFVYGIEAVYQAVEDAKRNAYINGIKNVEFISG 360
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
D K+ + + K D+VI DP R G +++ ++K+ +IVYVSCNP+T ARDL Y
Sbjct: 361 DAEKVMPELADKGVKADVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLARDLRY 420
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L + N YK +QPVDMFP+T H+E VCL+
Sbjct: 421 L-----EDN---GYKTMEVQPVDMFPYTHHVESVCLI 449
>gi|399046730|ref|ZP_10738995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
CF112]
gi|398055288|gb|EJL47370.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
CF112]
Length = 464
Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 131/219 (59%), Gaps = 11/219 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
NVN + G++ ++L+G+ +I E L L+F +SA +FFQ N Q + LY ++ A
Sbjct: 251 QNVNPQKTSLVFGDQTFSLWGRPSIAEKLGELSFDLSARAFFQLNPEQTQKLYDQVKKAA 310
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G E+VLDL+CGTGTIGL LA + V G E++P+A+ DA RNA N +NA+F
Sbjct: 311 AL--TGKELVLDLYCGTGTIGLWLAPHAREVRGIELIPEAVEDANRNAARNQATNASFHV 368
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + +PD+V+ DP R G+ LI+ LL ++ RIVYVSCNP+T A+D+
Sbjct: 369 GRAEVLMPKWAKQGTRPDVVVVDPPRTGLDDALIRSLLDVQPKRIVYVSCNPSTLAKDVA 428
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Y+L S+QPVDMFPHT H+E LE
Sbjct: 429 KLLQR---------YELASVQPVDMFPHTAHVEVTVRLE 458
>gi|228476330|ref|ZP_04061031.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119]
gi|228269613|gb|EEK11119.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119]
Length = 454
Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 128/219 (58%), Gaps = 11/219 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G++ TLYGK IT+ L F+IS SF+Q N+ Q E LY+ D A
Sbjct: 243 QNINNSHSNVIMGKQSMTLYGKDKITDQLSETIFEISDQSFYQINSVQTEKLYQKAIDYA 302
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+EIVLD +CG GTIGL +A KHVYG E+VP AI DA +NA +N+ N TF
Sbjct: 303 QL--SGNEIVLDTYCGIGTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFEC 360
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ ++ +PD+++ DP R G I+ LL+L RI+Y+SCNP+T RD
Sbjct: 361 GKAEEVIIEWKQKGIEPDVIMVDPPRKGCDQVFIETLLELAPKRIIYISCNPSTQQRDAQ 420
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Y LK + PVDMFPHT HIE V L E
Sbjct: 421 LLA---------NLYYLKEITPVDMFPHTTHIETVALFE 450
>gi|293373836|ref|ZP_06620180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
CMC 3f]
gi|292631235|gb|EFF49869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
CMC 3f]
Length = 462
Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 136/221 (61%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + GK +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 256 NKCNDTINDLDV----HVFKGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIARNFA 311
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I NA F
Sbjct: 312 ELT--GNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIKNAIFYA 369
Query: 122 GDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + DF N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 370 GDMKDMLTQDFINQHGRPDVIITDPPRAGMHQDVIDVILFAEPKRIVYVSCNPATQARDL 429
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+K++QPVDMFPHT H+E V LL+L
Sbjct: 430 QLLNEK---------YKVKAVQPVDMFPHTHHVENVVLLKL 461
>gi|390943595|ref|YP_006407356.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Belliella baltica DSM
15883]
gi|390417023|gb|AFL84601.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Belliella baltica DSM
15883]
Length = 468
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 98/208 (47%), Positives = 125/208 (60%), Gaps = 12/208 (5%)
Query: 16 EEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLF 75
E T G+ I E + GL F+I SF+QTN+ QA LYK+ D AGL+ G E+V DL+
Sbjct: 271 EVVTFAGRDYIEEEMEGLKFRIGPKSFYQTNSDQAYELYKVTRDFAGLK--GDEVVYDLY 328
Query: 76 CGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL-NKIGGDFGNA 134
GTGTI +A+ K V G E V AI DA N+K+N + N F GD+ + + DF A
Sbjct: 329 TGTGTIANFVAKQAKQVIGIEYVEAAIEDAKLNSKVNGLENTLFYAGDMKDMLNDDFIAA 388
Query: 135 FPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKG 194
KPD++I+DP R GMH ++ LLKL AP+IVYVSCNPAT ARD+ L
Sbjct: 389 HAKPDVIITDPPRAGMHDDVVNMLLKLAAPKIVYVSCNPATQARDVALLSEK-------- 440
Query: 195 CYKLKSLQPVDMFPHTPHIECVCLLELS 222
Y + +QPVDMFP T H+E V LL L
Sbjct: 441 -YSVDKIQPVDMFPQTYHVENVVLLTLK 467
>gi|224024090|ref|ZP_03642456.1| hypothetical protein BACCOPRO_00809 [Bacteroides coprophilus DSM
18228]
gi|224017312|gb|EEF75324.1| hypothetical protein BACCOPRO_00809 [Bacteroides coprophilus DSM
18228]
Length = 504
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 134/220 (60%), Gaps = 16/220 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++G+ V GK +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 293 NKCNDTIGDLDVE----VFSGKDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVAREFA 348
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL +G E+V DL+ GTGTI ++R + V G E VP+AI DA N+++N I+N F
Sbjct: 349 GL--EGDELVYDLYTGTGTIANFVSRRARKVIGIEYVPEAIEDAKVNSQINGITNTLFYA 406
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 407 GDMKDILTEDFIREHGRPDVIITDPPRAGMHNDVINVILAAEPKRIVYVSCNPATQARDL 466
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + G YK+ ++QPVDMFPHT H+E V LLE
Sbjct: 467 ---------QLLDGKYKVTAVQPVDMFPHTHHVENVVLLE 497
>gi|329116332|ref|ZP_08245049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parauberis NCFD 2020]
gi|326906737|gb|EGE53651.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parauberis NCFD 2020]
Length = 452
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 132/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G+E TLYGK IT+++ G T++ISA SF+Q NT AE LY+ D
Sbjct: 240 MQNINDQNGNAIFGKEFRTLYGKDTITDSMLGNTYEISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D +IV+D + G GTIGL+ A+ VK VYG EV+ QA+ DA +NA+LN I N FV
Sbjct: 300 SNLTKD--DIVIDAYSGIGTIGLSFAKSVKKVYGVEVIEQAVLDARKNAELNGIKNVQFV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ P++++ DP R G+ I+ +++ +I YVSCNPAT ARD+
Sbjct: 358 TDIAEAAMEKWSKEGIHPNVILVDPPRKGLTESFIRASVEMNPEKITYVSCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y LK +QPVD+FP T H+ECV LLE
Sbjct: 418 K-LYQELG-------YDLKKVQPVDLFPQTHHVECVSLLE 449
>gi|373456688|ref|ZP_09548455.1| RNA methyltransferase, TrmA family [Caldithrix abyssi DSM 13497]
gi|371718352|gb|EHO40123.1| RNA methyltransferase, TrmA family [Caldithrix abyssi DSM 13497]
Length = 467
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 131/215 (60%), Gaps = 14/215 (6%)
Query: 6 TSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRD 65
T + + GE+E+ LYG+S I + + F+ISANSFFQTNT QAE LY+ + AGL
Sbjct: 265 TRLAQIAQGEKEHLLYGRSYIQDRIGPFIFKISANSFFQTNTRQAEKLYEKAIEFAGL-- 322
Query: 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
D + +V DL+ GTGTI L LAR K V G+E A+ DA +NA + + NA FV+GDL
Sbjct: 323 DSNSVVWDLYSGTGTISLFLARHSKKVIGFETAVSAVQDARQNASEHGVQNAEFVEGDLL 382
Query: 126 KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCH 185
K G +PD+V++DP R GMH K+++ + + IVY+SCNP T ARDL L
Sbjct: 383 KTMPTVGE---RPDVVVTDPPRSGMHEKVVRMIKDIAPQTIVYISCNPTTLARDLKILS- 438
Query: 186 GVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Y+++ +QPVDMFP T HIE V L+
Sbjct: 439 --------DRYRIEKVQPVDMFPQTYHIETVVQLK 465
>gi|257876913|ref|ZP_05656566.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC20]
gi|257811079|gb|EEV39899.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC20]
Length = 474
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 130/220 (59%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +GE E LYGKS+I + L G TFQISA SF+Q NT Q EVLY+ +
Sbjct: 263 IQNINEEKTNVIMGEFERVLYGKSSIDDQLLGKTFQISAKSFYQVNTAQTEVLYQTAFEM 322
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L ++ +IV+D + G GTIG++LA VK V G EV+P+A++DA NAK N + N +
Sbjct: 323 AHLSEN--DIVVDAYAGIGTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYF 380
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G KI + +P +V DP R G+ I+ +K RIVY+SCNPAT ARDL
Sbjct: 381 IGKAEKIMPQWLREGIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLARDL 440
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ Y K +QPVD+FP T H+ECV LLE
Sbjct: 441 ALFA--------EEGYVTKEVQPVDLFPQTTHVECVVLLE 472
>gi|227523038|ref|ZP_03953087.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
hilgardii ATCC 8290]
gi|227089856|gb|EEI25168.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
hilgardii ATCC 8290]
Length = 456
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 134/224 (59%), Gaps = 13/224 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N+ +G + L+GK IT+ L GL F+IS NSF+Q N Q E LYKL
Sbjct: 243 VQNINPKNTNSLMGNQNKVLWGKGTITDQLMGLDFEISPNSFYQVNPIQTEKLYKLAIQK 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D +CG GTI L+LA+ VK VYG E+VP+AI DA RNA +N ISN FV
Sbjct: 303 AQLNKD--DIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEAIEDAKRNAHINKISNCKFV 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ G + A KPD+++ DP R G+ LI+ + ++ R++YVSCNPAT ARD
Sbjct: 361 VAKAEEQLGKWQKAGLKPDVIVVDPPRKGLDESLIESVAEMSLQRLIYVSCNPATLARDA 420
Query: 181 DYLC-HGVGDQNIKGCYKL-KSLQPVDMFPHTPHIECVCLLELS 222
HG Y++ + +QPVD FP T H+E V + E S
Sbjct: 421 KLFAEHG---------YQINQPIQPVDQFPQTVHVESVTVFEKS 455
>gi|375007230|ref|YP_004980862.1| putative RNA methyltransferase [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359286078|gb|AEV17762.1| putative RNA methyltransferase [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 457
Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 127/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G + L+G IT+ + G+ F ISA SF+Q N Q +VLY +
Sbjct: 246 VQNVNPERTNVIFGAKTRVLWGSEFITDRIGGIQFAISARSFYQVNPEQTKVLYDKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LAR KHVYG E+VP+AI DA RNAKLN I N TF
Sbjct: 306 AEL--TGRETVIDAYCGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAKLNGIQNVTFE 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + + D ++ DP R G L++ ++ +K PR+VYVSCNPAT ARDL
Sbjct: 364 VGAAEDVIPRWYQEGVRADCLVVDPPRKGCDASLLETIIAMKPPRVVYVSCNPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y+ +QPVDMFPHT H+ECV + L
Sbjct: 424 RILE--------DGGYETIEVQPVDMFPHTAHVECVAKIRL 456
>gi|433462528|ref|ZP_20420110.1| RNA methyltransferase, partial [Halobacillus sp. BAB-2008]
gi|432188717|gb|ELK45879.1| RNA methyltransferase, partial [Halobacillus sp. BAB-2008]
Length = 344
Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 133/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++N+N++ N +G E L+G+ I +T+ + F IS SF+Q N Q + LY
Sbjct: 130 VHNINSAKTNVILGRETNVLWGEEYIYDTIGDIRFMISPKSFYQVNPTQTKTLYDQALSY 189
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR G E V+D +CG GTI L LA+ + VYG E+VP+A+ DA +NA+LN + NA F
Sbjct: 190 ADLR--GGETVIDAYCGIGTISLFLAQKAEKVYGVEIVPEAVEDAKKNARLNKMDNAEFF 247
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ K+ + N +PD+++ DP R G +L+K +L ++ RIVYVSCNP+T ARDL
Sbjct: 248 VGEAEKLMPWWRNQGLRPDVIVVDPPRKGCDEQLLKAMLDMEPERIVYVSCNPSTLARDL 307
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L G Y+ K +QPVDMFP T H+ECV LE
Sbjct: 308 RVLED--------GGYETKEVQPVDMFPQTSHVECVTWLE 339
>gi|429204078|ref|ZP_19195371.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus saerimneri 30a]
gi|428147577|gb|EKW99800.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus saerimneri 30a]
Length = 456
Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 132/226 (58%), Gaps = 17/226 (7%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++N+N++ N +G L GK+ I + L GLTF+ISA SF+Q N Q E LY+ D
Sbjct: 244 LHNINSAKTNVILGSTTKLLAGKAEIEDQLNGLTFKISAQSFYQVNPTQTERLYQTAIDQ 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L++AR +HVYG E+VPQAI DA NA++NN++N TF
Sbjct: 304 AQL--TGQETVIDAYCGIGTISLSMARHAQHVYGVEIVPQAIEDAKENARVNNLTNLTFE 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD- 179
G+ + KPD+++ DP R G+ LI+ +K +IVYVSCNPAT RD
Sbjct: 362 MGEAETWMAKWQEQGIKPDVIMVDPPRKGLTSSLIQSATAMKPNKIVYVSCNPATLVRDI 421
Query: 180 ---LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
+DY G + K +QPVD FP T H+E + +L S
Sbjct: 422 REFMDY-----------GYHVTKPIQPVDQFPQTTHVESITVLSRS 456
>gi|314936049|ref|ZP_07843398.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
subsp. hominis C80]
gi|313655866|gb|EFS19609.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
subsp. hominis C80]
Length = 454
Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 128/219 (58%), Gaps = 11/219 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G++ TLYGK IT+ L F+IS SF+Q N+ Q E LY+ D A
Sbjct: 243 QNINNSHSNVIMGKQSMTLYGKDKITDQLSETIFEISDQSFYQINSVQTEKLYQKAIDYA 302
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+EIVLD +CG GTIGL +A KHVYG E+VP AI DA +NA +N+ N TF
Sbjct: 303 QL--SGNEIVLDTYCGIGTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFEC 360
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ ++ +PD+++ DP R G I+ LL+L RI+Y+SCNP+T RD
Sbjct: 361 GKAEEVIIEWKQKGIEPDVIMVDPPRKGCDQVFIETLLELAPKRIIYISCNPSTQQRDAQ 420
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Y LK + PVDMFPHT HIE V L E
Sbjct: 421 LLA---------NLYYLKEITPVDMFPHTTHIETVALFE 450
>gi|85816689|gb|EAQ37875.1| RNA methyltransferase, TrmA family [Dokdonia donghaensis MED134]
Length = 471
Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 132/214 (61%), Gaps = 13/214 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
GN ++ ++E Y G+ +I E + GL F+I+A SF+QTN+ QA LYK+ D AGL G
Sbjct: 266 GNDTIYDQEVICYAGRDHIFEEMEGLKFKINAKSFYQTNSEQAYELYKITRDFAGL--TG 323
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
+E+V DL+ GTGTI +A+ K V G E VP AI+ A NAKLN I NA F GD+ K+
Sbjct: 324 NELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPDAITAAKENAKLNGIENAEFFVGDMKKV 383
Query: 128 -GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
+F +PDI+I+DP R GMH ++ +L + +IVYVSCN AT ARDL L
Sbjct: 384 FNSEFIATHGEPDIIITDPPRDGMHKDVVDQILNISPQKIVYVSCNSATQARDLALL--- 440
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+ +QPVDMFP T H+E V LLE
Sbjct: 441 ------DDVYKVTKVQPVDMFPQTHHVENVVLLE 468
>gi|406027506|ref|YP_006726338.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri CD034]
gi|405125995|gb|AFS00756.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus buchneri CD034]
Length = 456
Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 130/220 (59%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N +G++ L GKS I +TL GL F ISA+SF+Q N Q E LY L
Sbjct: 243 VQNVNPEKTNALMGKKNKVLAGKSTIEDTLLGLKFDISASSFYQVNPVQTEKLYDLATKK 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D ++V+D +CG GTI L++AR K VYG E+VP+A+ DA +NAKLNN++N FV
Sbjct: 303 ADLSAD--DVVIDAYCGIGTISLSMARVAKQVYGVEIVPEAVEDAKKNAKLNNLTNVHFV 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + KPD++ DP R G+ LI ++K++ R+VYVSCNPAT ARD+
Sbjct: 361 TGKAETQMAKWQEDGLKPDVISVDPPRKGLDASLIDSVVKMQPKRVVYVSCNPATLARDV 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+G + +QPVD FP T H+E + +LE
Sbjct: 421 KLFTE-------QGYQVNQPIQPVDQFPQTVHVESITVLE 453
>gi|229083613|ref|ZP_04215941.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44]
gi|228699703|gb|EEL52360.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-44]
Length = 465
Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 132/221 (59%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKALEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA+LNN++NA F
Sbjct: 314 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNNMTNAEFA 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + ++ D ++ DP R G L+ ++++K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPNWYKEGIIADTIVVDPPRKGCDEALLNTIIEMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV LEL
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLEL 464
>gi|393788354|ref|ZP_10376484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides nordii
CL02T12C05]
gi|392656027|gb|EIY49668.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides nordii
CL02T12C05]
Length = 454
Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 139/221 (62%), Gaps = 16/221 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++ + V + G ++ E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 248 NKCNDTINDLDV----HVFKGNDHMFEEMEGLRFKVGPKSFYQTNSEQAYNLYKIARNFA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA NA++N+I NA F
Sbjct: 304 GL--TGNELVYDLYTGTGTIANFVSRQARQVIGIEYVPEAIEDAKVNAEINDIHNALFFA 361
Query: 122 GDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + DF N + +PD++I+DP R GMH ++ +L + RIVYVSCNPAT ARDL
Sbjct: 362 GDMKDMLTQDFINEYGRPDVIITDPPRAGMHQDVVDVILFAEPKRIVYVSCNPATQARDL 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L ++K YK+ ++QPVDMFPHT H+E V LLEL
Sbjct: 422 QLL-------DVK--YKVTAVQPVDMFPHTHHVENVVLLEL 453
>gi|338811036|ref|ZP_08623274.1| RNA methyltransferase, TrmA family protein [Acetonema longum DSM
6540]
gi|337277169|gb|EGO65568.1| RNA methyltransferase, TrmA family protein [Acetonema longum DSM
6540]
Length = 467
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 130/221 (58%), Gaps = 12/221 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +GE TL+GK+ I + L +F ISA SFFQ NT QAEVLY
Sbjct: 246 IQNINPRQTNVILGETNKTLWGKNTIIDRLGDFSFNISARSFFQVNTKQAEVLYNQAVQY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E VLD++CGTGTI L LA+ K VYG EVV AI DA +NAK N ++N F+
Sbjct: 306 AGL--TGRETVLDVYCGTGTITLFLAKHSKKVYGIEVVEPAILDARQNAKENGVTNTEFI 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD N + +P++++ DP R G +++ +++ R+VYVSCNPA+ ARDL
Sbjct: 364 TGDANVVIPRLSRQGIRPEVIVVDPPRAGCERSVLETFARMQPDRMVYVSCNPASLARDL 423
Query: 181 DYLC-HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L HG Y K +QPVDMFP T H+EC L+
Sbjct: 424 AVLAEHG---------YPAKEIQPVDMFPQTYHVECTVWLK 455
>gi|448236625|ref|YP_007400683.1| 23S rRNA methyltransferase [Geobacillus sp. GHH01]
gi|445205467|gb|AGE20932.1| 23S rRNA methyltransferase [Geobacillus sp. GHH01]
Length = 457
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 127/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G + L+G IT+ + G+ F ISA SF+Q N Q +VLY +
Sbjct: 246 VQNVNPERTNVIFGAKTRVLWGSEFITDRIGGIQFAISARSFYQVNPEQTKVLYDKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LAR KHVYG E+VP+AI DA RNAKLN I N TF
Sbjct: 306 AEL--TGRETVIDAYCGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAKLNGIQNVTFE 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + + D ++ DP R G L++ ++ +K PR+VYVSCNPAT ARDL
Sbjct: 364 VGAAEDVIPRWYQEGIRADCLVVDPPRKGCDAALLETIIAMKPPRVVYVSCNPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y+ +QPVDMFPHT H+ECV + L
Sbjct: 424 RILE--------DGGYETIEVQPVDMFPHTAHVECVAKIRL 456
>gi|420264205|ref|ZP_14766838.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. C1]
gi|394768581|gb|EJF48487.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. C1]
Length = 455
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 130/220 (59%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +GE E LYGKS+I + L G TFQISA SF+Q NT Q EVLY+ +
Sbjct: 244 IQNINEEKTNVIMGEFERVLYGKSSIDDQLLGKTFQISAKSFYQVNTAQTEVLYQTAFEM 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L ++ ++V+D + G GTIG++LA VK V G EV+P+A++DA NAK N + N +
Sbjct: 304 AQLSEN--DVVVDAYAGIGTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYF 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G KI + +P +V DP R G+ I+ +K RIVY+SCNPAT ARDL
Sbjct: 362 IGKAEKIMPQWLREGIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLARDL 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ Y K +QPVD+FP T H+ECV LLE
Sbjct: 422 ALFA--------EEGYVTKEVQPVDLFPQTTHVECVVLLE 453
>gi|227512910|ref|ZP_03942959.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
buchneri ATCC 11577]
gi|227083910|gb|EEI19222.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
buchneri ATCC 11577]
Length = 456
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 133/222 (59%), Gaps = 13/222 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N+ +G + L+GK IT+ L GL F+IS NSF+Q N Q E LYKL
Sbjct: 243 VQNINPKNTNSLMGNQNKVLWGKGTITDQLMGLDFEISPNSFYQVNPIQTEKLYKLAIQK 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D +CG GTI L+LA+ VK VYG E+VP+AI DA RNA +N ISN FV
Sbjct: 303 AQLNKD--DIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEAIEDAKRNAHINKISNCKFV 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ G + A KPD+++ DP R G+ LI+ + ++ R++YVSCNPAT ARD
Sbjct: 361 VAKAEEQLGKWQKAGLKPDVIVVDPPRKGLDESLIESVAEMSPQRLIYVSCNPATLARDA 420
Query: 181 DYLC-HGVGDQNIKGCYKL-KSLQPVDMFPHTPHIECVCLLE 220
HG Y++ + +QPVD FP T H+E V + E
Sbjct: 421 KLFAEHG---------YQINQPIQPVDQFPQTVHVESVTVFE 453
>gi|299140681|ref|ZP_07033819.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris C735]
gi|298577647|gb|EFI49515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris C735]
Length = 479
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 132/219 (60%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + G+ E T + G I ET+ L F++ + SF+QTNT QA LY + A
Sbjct: 270 VDNQKGNDTFGDLELTTFKGTDFIYETMEDLKFKVGSKSFYQTNTEQAYHLYSVARAFAA 329
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E+V DL+ GTGTI +A K V G E VP+AI DA N+K+N I N F G
Sbjct: 330 LT--GKELVYDLYTGTGTIANFVAHQAKQVIGIEYVPEAIEDAKENSKVNGIDNTLFYAG 387
Query: 123 DL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ N + DF + +PD++I+DP R GMH +++ +L R+VYVSCNPAT ARDL
Sbjct: 388 DMKNILTDDFIHEHGRPDVIITDPPRAGMHPDVVQVILNAAPKRVVYVSCNPATQARDL- 446
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + YK+ ++QPVDMFPHTPH+E V LLE
Sbjct: 447 --------QLMDADYKVTAVQPVDMFPHTPHVENVVLLE 477
>gi|326804241|ref|YP_004322059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650795|gb|AEA00978.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aerococcus urinae
ACS-120-V-Col10a]
Length = 459
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/218 (45%), Positives = 136/218 (62%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSV--GEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
+N++ NT+V G+++ +YG+ + + LTF+IS+ SFFQ NT QAE LY + A
Sbjct: 249 INSNQKNTNVIMGQDQRVVYGEDLYEDRMFDLTFRISSKSFFQVNTSQAEKLYHQALEAA 308
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L+ G E+V+D +CG GTI L LA+ K VYG EVVP AI+ A NA+LN + N TF
Sbjct: 309 DLK--GDEVVVDAYCGIGTISLCLAQAAKEVYGVEVVPDAINQARENAQLNGLDNVTFQA 366
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ D+ A KPD+V+ DP R G+ I+ +L+++ P+IVYVSCNPAT ARDL
Sbjct: 367 GKAEEVIQDWVQAGLKPDVVVVDPPRKGLAEDFIQSVLEVQPPKIVYVSCNPATLARDLA 426
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
DQ Y+L +QPVDMFP T H+E V L
Sbjct: 427 KFV----DQG----YQLGKVQPVDMFPQTHHVEAVVGL 456
>gi|365118491|ref|ZP_09337055.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Tannerella sp.
6_1_58FAA_CT1]
gi|363649534|gb|EHL88645.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Tannerella sp.
6_1_58FAA_CT1]
Length = 484
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 134/217 (61%), Gaps = 12/217 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T +E + G+ I E++ GL F+I SF+QTN+ QA LYK+ D AGL
Sbjct: 276 INQKANDTITDQEVHVFKGRDYILESMEGLQFKIGPKSFYQTNSEQAYELYKIARDFAGL 335
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI +A + V G E VP+AI DA N++LN ISN F GD
Sbjct: 336 T--GEELVYDLYTGTGTIANFVACRARKVIGIEYVPEAIEDAKVNSELNGISNTLFYAGD 393
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I DF N +PD++I+DP R GMH +IK +L + +IVYVSCNPAT ARDL+
Sbjct: 394 MKDILTQDFINEHGRPDVIITDPPRAGMHDDVIKTILFAEPVKIVYVSCNPATQARDLNL 453
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L D+ Y+++ +QPVDMFPHT H+E V LL
Sbjct: 454 L-----DEK----YRVEKVQPVDMFPHTHHVENVVLL 481
>gi|375149258|ref|YP_005011699.1| 23S rRNA m(5)U-1939 methyltransferase [Niastella koreensis GR20-10]
gi|361063304|gb|AEW02296.1| 23S rRNA m(5)U-1939 methyltransferase [Niastella koreensis GR20-10]
Length = 470
Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 135/222 (60%), Gaps = 12/222 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ +N +T E +GK I E L L F+I SFFQTNT Q E LY++ +
Sbjct: 258 LYTINPKKNDTIYDLEPKAYHGKGYIIEKLEKLQFKIGPKSFFQTNTRQGERLYQVTREL 317
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E V DL+CGTG+IGL ++ K + G E V +AI+DA NA LNNI +A F
Sbjct: 318 ACL--TGNETVYDLYCGTGSIGLFVSDKAKKIIGVETVQEAITDAWENAALNNIEHAKFF 375
Query: 121 QGDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD+ + +F KPD+VI+DP R GMH KL++ +L+ AP +VYVSCNPAT ARD
Sbjct: 376 AGDVIDVCTSEFFQEHGKPDVVITDPPRAGMHEKLVRKILETSAPLVVYVSCNPATQARD 435
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L+ L D+ Y++ +QPVDMFPHT HIE V L+L
Sbjct: 436 LNLL-----DEK----YEVTHVQPVDMFPHTHHIENVVQLKL 468
>gi|399054535|ref|ZP_10742986.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
CF112]
gi|398047686|gb|EJL40198.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
CF112]
Length = 481
Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 132/222 (59%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G++ TL+G I + + + F ISA SF+Q N Q EVLY +
Sbjct: 266 VQNINPDKTNVIFGKKTVTLWGSDVIYDYIGPIKFAISARSFYQVNPAQTEVLYNKTLEY 325
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AG G+E V+D +CG GTI L LA+ KHVYG E+VP+AI+DA RNA+LN + NATF
Sbjct: 326 AGA--TGTETVIDAYCGIGTISLFLAQKSKHVYGVEIVPEAIADANRNARLNGVKNATFE 383
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + + D+++ DP R G L+ +L+++ R+VYVSCNP+T ARDL
Sbjct: 384 AGPAEVVIPAWKEQGIRADVIVVDPPRKGCDEALLTTILEMQPERVVYVSCNPSTLARDL 443
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y++K +QPVDMFPHT H+ECV L+ L
Sbjct: 444 KVLAER---------YEVKEVQPVDMFPHTGHVECVILMNLK 476
>gi|308272258|emb|CBX28864.1| Uncharacterized RNA methyltransferase CT0009 [uncultured
Desulfobacterium sp.]
Length = 470
Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 133/220 (60%), Gaps = 14/220 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NN+ +S ++GE E L G S IT+ L F+ISANSFFQTNT A++LY +++
Sbjct: 261 INNITSSKAGVAIGEYENVLAGYSCITDKLGVFEFEISANSFFQTNTKGAQILYNKVKEF 320
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+DL+ GTGTI + L+ + G E+ ++SDA +N +N ISN TF+
Sbjct: 321 AQL--SGKETVIDLYSGTGTIPIFLSEDASEISGIEICESSVSDAKKNCIINGISNCTFI 378
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD I F KPD++I DP R GMH ++K ++ + A RIVYVSCNPAT ARDL
Sbjct: 379 TGD---IKNSFSKIDKKPDVIIIDPPRVGMHKDVVKQVVDISAERIVYVSCNPATLARDL 435
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L K Y + +QPVDMFPHT HIE V LE
Sbjct: 436 LVL---------KDYYDVMEVQPVDMFPHTFHIESVARLE 466
>gi|423345399|ref|ZP_17323088.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides merdae
CL03T12C32]
gi|409223185|gb|EKN16122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides merdae
CL03T12C32]
Length = 474
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 133/221 (60%), Gaps = 12/221 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M +N +T ++ GK +I E + GL F++ SF+QTN+ QA LYK+ +
Sbjct: 259 MYVINEKCNDTITDQDVLVFRGKDHIIEEMEGLQFKVGPKSFYQTNSEQAYELYKVAREF 318
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G+E+V DL+ GTGTI ++R K V G E VP+AI DA N+ LN I N F
Sbjct: 319 AGL--TGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSSLNKIENTLFY 376
Query: 121 QGDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD+ I DF N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARD
Sbjct: 377 AGDMKDILTQDFINQHGRPDVIITDPPRAGMHDDVINTILFAEPERIVYVSCNPATQARD 436
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L L ++K Y +K +QPVDMFPHT H+E V LLE
Sbjct: 437 LSLL-------SVK--YAVKKVQPVDMFPHTHHVENVVLLE 468
>gi|384248705|gb|EIE22188.1| S-adenosyl-L-methionine-dependent methyltransferase, partial
[Coccomyxa subellipsoidea C-169]
Length = 484
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/202 (48%), Positives = 125/202 (61%), Gaps = 8/202 (3%)
Query: 20 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79
+ GK I E L GL F I+ SFFQTN Q E LYK + D AGL GSE++LDL+ GTG
Sbjct: 289 ISGKDRIMERLCGLEFAITPLSFFQTNPKQTETLYKAVADAAGL--SGSEVLLDLYSGTG 346
Query: 80 TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG--GDFGNAFPK 137
TI L LAR V+G E A+ DA NA+ N ++NATF+Q DL+K P+
Sbjct: 347 TIALCLARKCSKVFGVESNQHAVDDAMENARHNRVTNATFLQADLSKPSDVAHVAERVPQ 406
Query: 138 PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYK 197
PD+V++DP R G+ +I++L+ A +VYVSCNPAT ARD+ L D +
Sbjct: 407 PDVVVADPARAGLGKPVIEYLMGCGASTLVYVSCNPATQARDIQLLT----DTAAPNSFC 462
Query: 198 LKSLQPVDMFPHTPHIECVCLL 219
L+S+QPVDMFPHT HIE V +L
Sbjct: 463 LESVQPVDMFPHTEHIESVVML 484
>gi|154492137|ref|ZP_02031763.1| hypothetical protein PARMER_01769 [Parabacteroides merdae ATCC
43184]
gi|423722255|ref|ZP_17696431.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides merdae
CL09T00C40]
gi|154087362|gb|EDN86407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides merdae
ATCC 43184]
gi|409242396|gb|EKN35158.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides merdae
CL09T00C40]
Length = 474
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 133/221 (60%), Gaps = 12/221 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M +N +T ++ GK +I E + GL F++ SF+QTN+ QA LYK+ +
Sbjct: 259 MYVINEKCNDTITDQDVLVFRGKDHIIEDMEGLQFKVGPKSFYQTNSEQAYELYKVAREF 318
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G+E+V DL+ GTGTI ++R K V G E VP+AI DA N+ LN I N F
Sbjct: 319 AGL--TGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSSLNKIENTLFY 376
Query: 121 QGDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD+ I DF N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARD
Sbjct: 377 AGDMKDILTQDFINQHGRPDVIITDPPRAGMHDDVINTILFAEPERIVYVSCNPATQARD 436
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L L ++K Y +K +QPVDMFPHT H+E V LLE
Sbjct: 437 LSLL-------SVK--YAVKKVQPVDMFPHTHHVENVVLLE 468
>gi|433545211|ref|ZP_20501570.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus agri
BAB-2500]
gi|432183489|gb|ELK41031.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus agri
BAB-2500]
Length = 478
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 131/219 (59%), Gaps = 11/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G++ TL+G I + + + F ISA SF+Q N Q EVLY +
Sbjct: 266 VQNINPDKTNVIFGKKTVTLWGSDVIYDYIGPIKFAISARSFYQVNPAQTEVLYNKTLEY 325
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AG G+E V+D +CG GTI L LA+ KHVYG E+VP+AI+DA RNA+LN + NATF
Sbjct: 326 AGA--TGTETVIDAYCGIGTISLFLAQKSKHVYGVEIVPEAIADANRNARLNGVENATFE 383
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + + D+++ DP R G L+ +L+++ R+VYVSCNP+T ARDL
Sbjct: 384 AGPAEVVIPAWKEQGIRADVIVVDPPRKGCDEALLTTILEMQPERVVYVSCNPSTLARDL 443
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y++K +QPVDMFPHT H+ECV LL
Sbjct: 444 KVLAER---------YEVKEVQPVDMFPHTGHVECVALL 473
>gi|257868017|ref|ZP_05647670.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC30]
gi|257874347|ref|ZP_05654000.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC10]
gi|257802100|gb|EEV31003.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC30]
gi|257808511|gb|EEV37333.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus casseliflavus
EC10]
Length = 474
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 130/220 (59%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +GE E LYGKS+I + L G TFQISA SF+Q NT Q EVLY+ +
Sbjct: 263 IQNINEEKTNVIMGEFERVLYGKSSIDDQLLGKTFQISAKSFYQINTAQTEVLYQTAFEM 322
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L ++ +IV+D + G GTIG++LA VK V G EV+P+A++DA NAK N + N +
Sbjct: 323 AQLSEN--DIVVDAYAGIGTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYF 380
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G KI + +P +V DP R G+ I+ +K RIVY+SCNPAT ARDL
Sbjct: 381 IGKAEKIMPQWLREGIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLARDL 440
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ Y K +QPVD+FP T H+ECV LLE
Sbjct: 441 ALFE--------EEGYVTKEVQPVDLFPQTTHVECVVLLE 472
>gi|255533504|ref|YP_003093876.1| TrmA family RNA methyltransferase [Pedobacter heparinus DSM 2366]
gi|255346488|gb|ACU05814.1| RNA methyltransferase, TrmA family [Pedobacter heparinus DSM 2366]
Length = 481
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 132/220 (60%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN +T +E T G+ +I E + GL F+I SF+QTN+ QA LYK+ ++ AG
Sbjct: 269 VNQKKNDTIFDQEVITYAGRDHIFEEMEGLKFKIGVKSFYQTNSDQAHELYKITKEFAGF 328
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ G GTI +AR VK V G E VP AI DA NA LN I N F GD
Sbjct: 329 --SGDELVYDLYTGAGTIANFVARSVKQVVGIEYVPTAIEDAKFNATLNGIDNTVFYAGD 386
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I +F KPD+VI+DP R GMH +++ LL+++A +IVYVSCN AT ARDL
Sbjct: 387 MKDILTREFIAEHGKPDVVITDPPRAGMHADVVERLLEMEAGKIVYVSCNAATQARDLAL 446
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L K Y++ ++PVDMFPHT H+E V LL+ +
Sbjct: 447 L---------KEKYEVVRIKPVDMFPHTQHVENVVLLKFT 477
>gi|152974152|ref|YP_001373669.1| RNA methyltransferase [Bacillus cytotoxicus NVH 391-98]
gi|152022904|gb|ABS20674.1| RNA methyltransferase, TrmA family [Bacillus cytotoxicus NVH
391-98]
Length = 458
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 131/221 (59%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N GE LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGETTTVLYGSEYIYDFIGDIQFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA+LNN++NA F
Sbjct: 307 AQL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNNMTNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + ++ D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPNWYKEGVIADTIVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|304382443|ref|ZP_07364941.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella marshii DSM
16973]
gi|304336396|gb|EFM02634.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella marshii DSM
16973]
Length = 473
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 136/220 (61%), Gaps = 13/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + G+ + LY GK +I ET+ L F++ SF+QTNT QA LY ++ D A
Sbjct: 263 VDNQKGNDTFGDLQLQLYKGKDHIYETMEDLRFKVGPKSFYQTNTAQAYHLYSVVRDLAR 322
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L GSE+V DL+ GTGTI +AR V G E VP+AI DA N+++N I N F G
Sbjct: 323 L--TGSELVYDLYTGTGTIANFVARNAGRVIGIEYVPEAIEDAKVNSQINGIDNTLFYAG 380
Query: 123 DLNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I + F +PD+VI+DP R GMH +++ +L RIVYVSCNPAT ARDL
Sbjct: 381 DMKNILTETFIAEHSRPDVVITDPPRAGMHPDVVQTILNTLPQRIVYVSCNPATQARDLA 440
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
+ +++ YK+ +QPVDMFPHTPH+E V LLEL
Sbjct: 441 LM-------DVR--YKVTVVQPVDMFPHTPHVENVVLLEL 471
>gi|357636080|ref|ZP_09133955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus macacae
NCTC 11558]
gi|357584534|gb|EHJ51737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus macacae
NCTC 11558]
Length = 451
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 130/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N NT +GEE TLYG I + + G + ISA SF+Q NT AE LY+ +
Sbjct: 240 IQNINDQNTNTILGEEFRTLYGNDRIEDIMLGNRYAISAQSFYQVNTAMAEKLYEKAIEF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A + +D +V+D + G GTIGL+ A+ VK VYG E+V +A+ DA NA LN ISNA +
Sbjct: 300 ADVSEDA--VVIDAYSGIGTIGLSFAKQVKAVYGVEIVKEAVQDARENAVLNGISNAVYT 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + N +PD+V+ DP R G+ IK ++ +IVY+SCNPAT ARD+
Sbjct: 358 ANSAEKAMAQWSNENIQPDLVVVDPPRKGLTESFIKASADMQPQKIVYISCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKLK +QPVD+FP T HIECV LL
Sbjct: 418 K-LYQELG-------YKLKKVQPVDLFPQTHHIECVSLL 448
>gi|325570600|ref|ZP_08146326.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
ATCC 12755]
gi|325156446|gb|EGC68626.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus casseliflavus
ATCC 12755]
Length = 465
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 129/220 (58%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +GE E LYGKS+I + L G TFQISA SF+Q NT Q EVLY+
Sbjct: 254 IQNINEEKTNVIMGEFERVLYGKSSIDDQLLGKTFQISAKSFYQVNTAQTEVLYQTAFKM 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L ++ ++V+D + G GTIG++LA VK V G EV+P+A++DA NAK N + N +
Sbjct: 314 AHLSEN--DVVVDAYAGIGTIGISLADRVKEVLGMEVIPEAVNDAKANAKRNGVENVHYF 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G KI + +P +V DP R G+ I+ +K RIVY+SCNPAT ARDL
Sbjct: 372 IGKAEKIMPQWLREGIQPTVVFVDPPRKGLDASFIETTAAVKPERIVYISCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ Y K +QPVD+FP T H+ECV LLE
Sbjct: 432 ALFA--------EEGYVTKEVQPVDLFPQTTHVECVVLLE 463
>gi|389818016|ref|ZP_10208509.1| RNA methyltransferase [Planococcus antarcticus DSM 14505]
gi|388464160|gb|EIM06494.1| RNA methyltransferase [Planococcus antarcticus DSM 14505]
Length = 456
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N+ N GEE TL+GK I + + + F+ISA SF+Q N Q EVLY +
Sbjct: 242 VQNINSEKTNVIFGEETLTLWGKDVIEDRIGDVRFEISARSFYQINPEQTEVLYGQALEY 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ K V G E+VPQAI DA RNA+LN ++N F
Sbjct: 302 AQL--TGEETVIDAYCGIGTISLFLAQQAKFVMGVEIVPQAIEDAKRNAELNGLANTLFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + K D+++ DP R G +L++ +LK + R+VYVSCNPAT ARDL
Sbjct: 360 AGPAEQVIPRWYKEGKKADVLVVDPPRKGCDEQLLRTILKQRPTRVVYVSCNPATLARDL 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y K +QPVDMFP + H+ECV LEL
Sbjct: 420 RILE--------DGGYSTKEVQPVDMFPQSTHVECVAHLEL 452
>gi|260662798|ref|ZP_05863692.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
fermentum 28-3-CHN]
gi|260552879|gb|EEX25878.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
fermentum 28-3-CHN]
Length = 458
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 130/220 (59%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N +G + + L+G+ I +TL G+ F IS SF+Q N Q E LY+ +
Sbjct: 244 VQNVNDKRTNVILGTKNHLLWGEPTIHDTLLGIDFTISPLSFYQVNPQQTERLYQTAIEN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL DGS+ V+D +CG GTI L +A+ KHVYG E+VP AI+DA +NA N I NATFV
Sbjct: 304 AGL--DGSQTVIDAYCGIGTISLAVAKHAKHVYGVEIVPAAIADAKQNAANNGIENATFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD+VI DP R G+ +LI+ K+ +++YVSCNPAT RDL
Sbjct: 362 VGKAEEQFAKWQAEGLKPDVVIVDPPRKGLDAQLIEATGKMAPQKVIYVSCNPATLVRDL 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+G + K +QPVD FP T H+E V +LE
Sbjct: 422 QRFAE-------QGYHVTKPIQPVDQFPQTTHVESVTVLE 454
>gi|228995690|ref|ZP_04155353.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17]
gi|229003319|ref|ZP_04161149.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4]
gi|228757937|gb|EEM07152.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock1-4]
gi|228764067|gb|EEM12951.1| Uncharacterized RNA methyltransferase [Bacillus mycoides Rock3-17]
Length = 465
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNREQTKVLYDKALEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 314 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFA 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + ++ D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPNWYKEGVIADTIVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV LEL
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLEL 464
>gi|406670035|ref|ZP_11077292.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Facklamia ignava CCUG
37419]
gi|405580306|gb|EKB54368.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Facklamia ignava CCUG
37419]
Length = 456
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 129/211 (61%), Gaps = 10/211 (4%)
Query: 10 NTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSE 69
N +G E + L+G+ T+ + LTF+ISA SF+Q NT QAE LY+ D A L G+E
Sbjct: 252 NAIMGNETHLLWGQPYYTDQMLDLTFKISARSFYQVNTLQAERLYQEAIDAAQL--TGTE 309
Query: 70 IVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG 129
VLD +CG GTI L LAR K VYG E+VP+AI A NA+LN +SNATF G +
Sbjct: 310 TVLDAYCGIGTITLALARHAKQVYGMEIVPEAIEMARENAQLNQLSNATFETGSADHWIR 369
Query: 130 DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGD 189
+ + D+++ DP R G+ I+ +++L RI YVSCNPAT ARD+ LC
Sbjct: 370 QWQDEGLHFDVMVVDPPRKGLDADFIQTMIELSPDRIAYVSCNPATQARDVKLLC----- 424
Query: 190 QNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ Y+L +QPVD+FP T H+ECV L+E
Sbjct: 425 ---EAGYQLNYVQPVDLFPQTVHVECVVLME 452
>gi|404416612|ref|ZP_10998429.1| RNA methyltransferase [Staphylococcus arlettae CVD059]
gi|403491016|gb|EJY96544.1| RNA methyltransferase [Staphylococcus arlettae CVD059]
Length = 457
Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 127/218 (58%), Gaps = 11/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+NT+ N +G++ YTLYG+ I +TL +TF+IS SF+Q N+ Q E LY+ D A
Sbjct: 245 NINTTHSNVIMGDQSYTLYGEDKIIDTLSEITFKISDQSFYQINSAQTEKLYQKAIDYAN 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+EIVLD +CG GTIGL +A KHVYG EVV +AI DA +NA+LN N TFV G
Sbjct: 305 LA--GNEIVLDTYCGIGTIGLYMAPKAKHVYGVEVVKEAIEDAKQNAQLNEFENTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + PD+V+ DP R G + LL L+ +IVY+SCNP+T RD
Sbjct: 363 KAEDVILQWKQEGVHPDVVMVDPPRKGCDETFLNTLLALEPKKIVYISCNPSTQQRDAQI 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Y L + PVDMFP T H+E V L E
Sbjct: 423 LATK---------YNLTQITPVDMFPQTTHVETVALFE 451
>gi|289449975|ref|YP_003474465.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289184522|gb|ADC90947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 458
Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 128/217 (58%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N N +G E LYG ET+ GLTF +S SF Q NT QAE LY+ + + AG
Sbjct: 248 NKNCQATNVILGHESRVLYGCDCYRETIGGLTFMVSWQSFLQVNTLQAEKLYQTVLEVAG 307
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E V+D +CG GTI L LAR K VYG E+VP AI A RNA++N I NA+FV G
Sbjct: 308 L--SGNETVIDAYCGIGTISLYLARRAKFVYGVEIVPAAIEMAERNAEVNGIHNASFVCG 365
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + PD+V+ DP R G+ ++I+ L ++ +IVYVSCNPAT ARD+
Sbjct: 366 KAETVIPQWVAEGLAPDVVVVDPPRKGLATEVIEALSTVRPAKIVYVSCNPATLARDMAL 425
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +K Y +QPVDMFP TPH+E V L+
Sbjct: 426 L--------LKAGYHAGDVQPVDMFPQTPHVESVVLM 454
>gi|335429661|ref|ZP_08556559.1| RNA methyltransferase, TrmA family protein [Haloplasma contractile
SSD-17B]
gi|334889671|gb|EGM27956.1| RNA methyltransferase, TrmA family protein [Haloplasma contractile
SSD-17B]
Length = 454
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 128/220 (58%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N N + +GE+E L+GK I + L G+ F+IS SF+Q N Q E LY D
Sbjct: 243 IQNTNPRKTSIVLGEQERVLFGKGYIVDVLCGMKFKISPKSFYQVNPVQTETLYNKAIDL 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G+E VLD +CG GTIGL +R +V G EV AI DA NAK+NN+ N F
Sbjct: 303 ANLK--GNERVLDAYCGIGTIGLIASRKAGNVIGVEVNKDAIQDAIGNAKINNVKNVRFF 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
D + + N K D+V DP R G + +K L+KLK R+VY+SC+P T ARDL
Sbjct: 361 TADASVFMVELSNNNEKIDVVFLDPPRSGCDERFLKSLIKLKPKRVVYISCDPKTQARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+L IKG YK+ +QPVDMFPHT H+EC+ LE
Sbjct: 421 SHL--------IKGGYKVNKIQPVDMFPHTHHVECIVSLE 452
>gi|228989496|ref|ZP_04149481.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM
12442]
gi|228770221|gb|EEM18800.1| Uncharacterized RNA methyltransferase [Bacillus pseudomycoides DSM
12442]
Length = 465
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKALEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 314 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFA 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + ++ D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPNWYKEGVIADTIVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV LEL
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLEL 464
>gi|56418877|ref|YP_146195.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
gi|56378719|dbj|BAD74627.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
Length = 457
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 127/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G + L+G IT+ + G+ F ISA SF+Q N Q +VLY +
Sbjct: 246 VQNVNPERTNVIFGAKTRVLWGSEFITDRIGGIQFAISARSFYQVNPEQTKVLYDKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LAR KHVYG E+VP+AI DA RNA+LN I N TF
Sbjct: 306 AEL--TGRETVIDAYCGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAELNGIQNVTFE 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + + D ++ DP R G L++ ++ +K PR+VYVSCNPAT ARDL
Sbjct: 364 VGAAEDVIPRWYEEGVRADCLVVDPPRKGCDAALLETIIAMKPPRVVYVSCNPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y+ +QPVDMFPHT H+ECV + L
Sbjct: 424 RILE--------DGGYETIEVQPVDMFPHTAHVECVAKIRL 456
>gi|410099634|ref|ZP_11294603.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
goldsteinii CL02T12C30]
gi|409218001|gb|EKN10974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
goldsteinii CL02T12C30]
Length = 471
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 132/218 (60%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T +E GK +I E + GL F++ SF+QTN+ QA LYK+ + AGL
Sbjct: 262 INEKCNDTITDQEVLVFRGKDHIIEEMEGLQFKVGPKSFYQTNSEQAYNLYKVAREFAGL 321
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI ++R K V G E VP+AI DA N+ LN I N F GD
Sbjct: 322 --TGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSALNKIDNTLFYAGD 379
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I DF N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 380 MKDILTADFINQHGRPDVIITDPPRAGMHDDVIDTILFAEPERIVYVSCNPATQARDLSL 439
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L ++K Y +K ++PVDMFPHT H+E V LLE
Sbjct: 440 L-------SVK--YDVKKVRPVDMFPHTHHVENVVLLE 468
>gi|302390099|ref|YP_003825920.1| 23S rRNA m(5)U-1939 methyltransferase [Thermosediminibacter oceani
DSM 16646]
gi|302200727|gb|ADL08297.1| 23S rRNA m(5)U-1939 methyltransferase [Thermosediminibacter oceani
DSM 16646]
Length = 450
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 132/218 (60%), Gaps = 10/218 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVNT N +G+E +YG+ +I + + + F +S NSFFQ N Q EVLYK + + AG
Sbjct: 241 NVNTKKTNVIMGDENILVYGEPHIIDFIGEIKFTLSPNSFFQVNPVQVEVLYKKVMEYAG 300
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V+D +CG GTI L LA + VYG EVVPQA+ DA NA LN I N F++G
Sbjct: 301 L--TGEETVIDAYCGIGTITLFLAGKARMVYGIEVVPQAVMDARNNALLNGIENVEFIEG 358
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + D+++ DP R G KL+ +K+ PR+VYVSCNPAT ARDL Y
Sbjct: 359 AAEEVMPQLVERGIRADVIVMDPPRRGCDEKLLDAAVKMNPPRMVYVSCNPATLARDLRY 418
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L D+ Y+ + +QPVDMFP T H+ECV L++
Sbjct: 419 L----EDRG----YRTELVQPVDMFPFTHHVECVALIK 448
>gi|332292761|ref|YP_004431370.1| RNA methyltransferase, TrmA family [Krokinobacter sp. 4H-3-7-5]
gi|332170847|gb|AEE20102.1| RNA methyltransferase, TrmA family [Krokinobacter sp. 4H-3-7-5]
Length = 470
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 132/216 (61%), Gaps = 13/216 (6%)
Query: 7 SVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRD 65
S GN ++ ++E + G+ +I E + GL F+I+A SF+QTN+ QA LYK+ D AGL
Sbjct: 264 SKGNDTIYDQEVICFSGRDHIFEEMEGLKFKINAKSFYQTNSKQAYELYKITRDFAGL-- 321
Query: 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
G+E+V DL+ GTGTI +A+ + V G E VP AI A NAKLN I N F GD+
Sbjct: 322 SGNELVYDLYTGTGTIAQFVAKKARKVIGVEAVPDAIEAAKENAKLNGIENTEFFVGDMK 381
Query: 126 KI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184
K+ DF N PDI+I+DP R GMH +++ ++ + ++VYVSCN AT ARDL L
Sbjct: 382 KVFNTDFINTHGVPDIIITDPPRDGMHADVVQQIINISPEKVVYVSCNSATQARDLALL- 440
Query: 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+ +QPVDMFP T H+E V LLE
Sbjct: 441 --------DDTYKVTKVQPVDMFPQTHHVENVVLLE 468
>gi|326391815|ref|ZP_08213332.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
JW 200]
gi|325992144|gb|EGD50619.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
JW 200]
Length = 455
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 130/217 (59%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+NT N +GEE T+YG NI + ++ + F+IS SFFQ N Q EVLY + A
Sbjct: 244 NINTKKTNVIMGEENITIYGSDNIIDYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYAD 303
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G E V+D++CG GTI L A+ VYG E V QA+ DA RNA +N I N F+ G
Sbjct: 304 LK--GEETVIDVYCGIGTISLFAAQKAAFVYGIEAVYQAVEDAKRNAYINGIKNVEFISG 361
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
D K+ + + K D+VI DP R G +++ ++K+ +IVYVSCNP+T ARDL Y
Sbjct: 362 DAEKVMPELADKGVKADVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLARDLRY 421
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L + N YK +QPVDMFP+T H+E V L+
Sbjct: 422 L-----EDN---GYKTMEVQPVDMFPYTSHVESVALV 450
>gi|227515533|ref|ZP_03945582.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
fermentum ATCC 14931]
gi|227086146|gb|EEI21458.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
fermentum ATCC 14931]
Length = 458
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 130/220 (59%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N +G + + L+G+ I +TL G+ F IS SF+Q N Q E LY+ +
Sbjct: 244 VQNVNDKRTNVILGTKNHLLWGEPTIHDTLLGIDFTISPLSFYQVNPQQTERLYQTAIEN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL DGS+ V+D +CG GTI L +A+ KHVYG E+VP AI+DA +NA N I NATFV
Sbjct: 304 AGL--DGSKTVIDAYCGIGTISLAVAKHAKHVYGVEIVPAAIADAKQNAANNGIENATFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD+VI DP R G+ +LI+ K+ +++YVSCNPAT RDL
Sbjct: 362 VGKAEEQFAKWQAEGLKPDVVIVDPPRKGLDAQLIEATGKMAPQKVIYVSCNPATLVRDL 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+G + K +QPVD FP T H+E V +LE
Sbjct: 422 QRFAE-------QGYHVTKPIQPVDQFPQTTHVESVTVLE 454
>gi|457095064|gb|EMG25559.1| RNA methyltransferase, TrmA family [Streptococcus parauberis
KRS-02083]
Length = 452
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 132/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G+E TLYGK IT+++ G T++ISA SF+Q NT AE LY+ +
Sbjct: 240 MQNINDQNGNAIFGKEFRTLYGKDTITDSMLGNTYEISAQSFYQVNTEMAEKLYQTAINF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D +IV+D + G GTIGL+ A+ VK VYG EV+ QA+ DA +NA+LN I N FV
Sbjct: 300 SNLTKD--DIVIDAYSGIGTIGLSFAKSVKKVYGVEVIEQAVLDARKNAELNGIKNVQFV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ P++++ DP R G+ I+ +++ +I YVSCNPAT ARD+
Sbjct: 358 TDIAEAAMEKWSKEGIHPNVILVDPPRKGLTESFIRASVEMNPEKITYVSCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y LK +QPVD+FP T H+ECV LLE
Sbjct: 418 K-LYQELG-------YDLKKVQPVDLFPQTHHVECVSLLE 449
>gi|373111319|ref|ZP_09525576.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CCUG 10230]
gi|423130997|ref|ZP_17118672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CCUG 12901]
gi|371640508|gb|EHO06106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CCUG 10230]
gi|371643349|gb|EHO08903.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CCUG 12901]
Length = 470
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 133/215 (61%), Gaps = 13/215 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
N ++ +++ LY G+ I E + GL F I+A SF+QTN+ QA LYK+ D AGL G
Sbjct: 266 ANDTIYDQDVVLYKGRDYILEEMEGLKFSINAKSFYQTNSEQAYELYKITRDYAGL--TG 323
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
+E+V DL+ GTGTI +++ V G E VP+AI DA NA+ NNI+N F GD+ +
Sbjct: 324 NELVYDLYTGTGTIAQFVSKKAGKVVGVEAVPEAIEDAKLNAERNNITNCDFFVGDMKNV 383
Query: 128 GGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
D F PD++I+DP R GMH +++ LLK+ A RIVYVSCN AT ARDL + H
Sbjct: 384 FNDEFIATHGHPDVIITDPPRDGMHKDVVEMLLKVGAKRIVYVSCNSATQARDLALMDHK 443
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
YK+ ++PVDMFP T H+E V LLEL
Sbjct: 444 ---------YKVIKVRPVDMFPQTHHVENVVLLEL 469
>gi|423134687|ref|ZP_17122334.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CIP 101113]
gi|371645502|gb|EHO11025.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CIP 101113]
Length = 470
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 133/215 (61%), Gaps = 13/215 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
N ++ +++ LY G+ I E + GL F I+A SF+QTN+ QA LYK+ D AGL G
Sbjct: 266 ANDTIYDQDVVLYKGRDYILEEMEGLKFSINAKSFYQTNSEQAYELYKITRDYAGL--TG 323
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
+E+V DL+ GTGTI +++ V G E VP+AI DA NA+ NNI+N F GD+ +
Sbjct: 324 NELVYDLYTGTGTIAQFVSKKAGKVVGVEAVPEAIEDAKLNAERNNITNCDFFVGDMKNV 383
Query: 128 GGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
D F PD++I+DP R GMH +++ LLK+ A RIVYVSCN AT ARDL + H
Sbjct: 384 FNDEFIATHGHPDVIITDPPRDGMHKDVVEMLLKVGAKRIVYVSCNSATQARDLALMDHK 443
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
YK+ ++PVDMFP T H+E V LLEL
Sbjct: 444 ---------YKVIKVRPVDMFPQTHHVENVVLLEL 469
>gi|261418678|ref|YP_003252360.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
gi|319765493|ref|YP_004130994.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
gi|261375135|gb|ACX77878.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
gi|317110359|gb|ADU92851.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
Length = 457
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 128/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G + L+G IT+ + + F ISA SF+Q N Q +VLY +
Sbjct: 246 VQNINPERTNVIFGAKTRVLWGSEYITDRIGDIQFAISARSFYQVNPEQTKVLYDKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L GSE V+D +CG GTI L LAR KHVYG E+VP+AI DA RNA+LN I N TF
Sbjct: 306 AEL--TGSETVMDAYCGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAELNGIRNVTFE 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + + D ++ DP R G L++ ++ +K PR+VYVSCNPAT ARDL
Sbjct: 364 VGAAEDVIPRWYQEGIRADCLVVDPPRKGCDASLLETIIAMKPPRVVYVSCNPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y+ +QPVDMFPHT H+ECV ++L
Sbjct: 424 RILE--------DGGYETIEVQPVDMFPHTAHVECVAKIQL 456
>gi|423327429|ref|ZP_17305237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CCUG 3837]
gi|404606665|gb|EKB06201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CCUG 3837]
Length = 470
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 133/215 (61%), Gaps = 13/215 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
N ++ +++ LY G+ I E + GL F I+A SF+QTN+ QA LYK+ D AGL G
Sbjct: 266 ANDTIYDQDVVLYKGRDYILEEMEGLKFSINAKSFYQTNSEQAYELYKITRDYAGL--TG 323
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
+E+V DL+ GTGTI +++ V G E VP+AI DA NA+ NNI+N F GD+ +
Sbjct: 324 NELVYDLYTGTGTIAQFVSKKAGKVVGVEAVPEAIEDAKLNAERNNITNCDFFVGDMKNV 383
Query: 128 GGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
D F PD++I+DP R GMH +++ LLK+ A RIVYVSCN AT ARDL + H
Sbjct: 384 FNDEFIATHGHPDVIITDPPRDGMHKDVVEMLLKVGAKRIVYVSCNSATQARDLALMDHK 443
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
YK+ ++PVDMFP T H+E V LLEL
Sbjct: 444 ---------YKVIKVRPVDMFPQTHHVENVVLLEL 469
>gi|116334207|ref|YP_795734.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
brevis ATCC 367]
gi|116099554|gb|ABJ64703.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
brevis ATCC 367]
Length = 457
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 125/218 (57%), Gaps = 9/218 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVN N +G LYGK I +TL GLTF ISA SF+Q N Q E LY++ D AG
Sbjct: 245 NVNAKKTNVIMGNVTRVLYGKPTIEDTLMGLTFAISARSFYQVNPQQTEKLYQMAIDKAG 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E V+D +CG GTI L LA+ K VYG E+VP+AI DA NA+ N++SN TF
Sbjct: 305 L--TGAETVIDAYCGIGTISLALAKHAKQVYGVEIVPEAIEDAKVNAQKNHLSNVTFAVN 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ A KPD+++ DP R G+ LI K+ ++VYVSCNPAT RD+
Sbjct: 363 KAEDQMAEWQAAGIKPDVIVVDPPRKGLAESLIDSAAKMAPKKVVYVSCNPATLVRDVAR 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G + +QPVD FP TPH+E V +L+
Sbjct: 423 FTE-------LGYHVDGPVQPVDQFPQTPHVESVTVLK 453
>gi|242371794|ref|ZP_04817368.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
gi|242350495|gb|EES42096.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
Length = 453
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 121/219 (55%), Gaps = 11/219 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G TLYGK I + L +TF IS SF+Q N+ Q E LY+ D A
Sbjct: 244 QNINDSHSNVIMGRHSVTLYGKEKIVDQLSEVTFNISDQSFYQINSAQTEKLYQKAIDYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVP AI DA NA N ++N TF
Sbjct: 304 QLT--GEEIVLDTYCGIGTIGLYMAPQAKHVYGVEVVPSAIKDAEENATKNQLNNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G I ++ KPD+V+ DP R G IK LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDIILEWKAQGIKPDVVMVDPPRKGCDETFIKTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Y L + PVDMFP T HIE V L E
Sbjct: 422 MLA---------SHYHLVEITPVDMFPQTTHIETVALFE 451
>gi|228478261|ref|ZP_04062869.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126]
gi|228249940|gb|EEK09210.1| 23S rRNA-methyltransferase RumA [Streptococcus salivarius SK126]
Length = 452
Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 131/220 (59%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G++ TLYG+ IT+++ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNTNAIFGKDFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA N I+NA +V
Sbjct: 300 SDLNSDS--IVIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNADRNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y+LK +QPVD+FP T H+ECVCLLE
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVCLLE 449
>gi|359404787|ref|ZP_09197604.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella stercorea
DSM 18206]
gi|357559970|gb|EHJ41387.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella stercorea
DSM 18206]
Length = 473
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 132/213 (61%), Gaps = 13/213 (6%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N + G+ + +++ G +I ET+ L F++ SF+QTNT QA LY + + A L G
Sbjct: 269 NDTFGDLDLSVFKGNDHIFETMEDLRFKVGPKSFYQTNTEQAYHLYSVARNFAKLT--GD 326
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
E+V DL+ GTGTI +AR + V G E VP+AI DA N+++NNISN F GD+ I
Sbjct: 327 ELVYDLYTGTGTIANFVARQARQVIGIEYVPEAIEDAKVNSEVNNISNTKFYAGDMKDIL 386
Query: 129 GD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 187
D F +PD++I+DP R GMH +I +L+ RIVYVSCNP+T ARDL
Sbjct: 387 NDEFIQKHGRPDVIITDPPRAGMHQDVIDTILRAHPKRIVYVSCNPSTQARDL------- 439
Query: 188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + YK+ ++QPVDMFPHTPH+E V LLE
Sbjct: 440 --QALDVAYKVMAVQPVDMFPHTPHVENVVLLE 470
>gi|158521596|ref|YP_001529466.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3]
gi|158510422|gb|ABW67389.1| RNA methyltransferase, TrmA family [Desulfococcus oleovorans Hxd3]
Length = 471
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 130/220 (59%), Gaps = 14/220 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NN+ + GE E L+G I++ L +F ISANSFFQTNT AE LY + +
Sbjct: 263 VNNITARKAGVAQGEYEILLHGAPFISDRLGRFSFDISANSFFQTNTRGAERLYTVAREY 322
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL GS+ V+DL+CGTGTI + L+ K V G E+ ++DA N + NN+SN FV
Sbjct: 323 AGL--TGSQTVVDLYCGTGTIAIWLSGAAKEVIGLEINDSCLADAVNNCRTNNVSNVRFV 380
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + D+++ DP R GMH +++ +L + PRIVYVSCNPAT ARD+
Sbjct: 381 AGDVKET---LPRLDCRADVLVIDPPRAGMHKDVVEQVLAMAPPRIVYVSCNPATLARDV 437
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Y + +QPVDMFPHTPHIECV L+
Sbjct: 438 AMLSEA---------YTVAEVQPVDMFPHTPHIECVARLD 468
>gi|148380817|ref|YP_001255358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. ATCC 3502]
gi|148290301|emb|CAL84425.1| putative RNA methyltransferase [Clostridium botulinum A str. ATCC
3502]
Length = 456
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 136/220 (61%), Gaps = 13/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N ++ + ++ LYG+ I E L GL F+I+ +FFQTN+ AE LY +++D
Sbjct: 248 LHTINDTLSDVVQVDKLEILYGRDYIIEELLGLKFKIAPEAFFQTNSKGAEKLYSIVKDF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D S++V DL+CGTGTIG +A K V G E++ +A+ A NAKLN ++N F+
Sbjct: 308 LG--DASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFI 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ D KPDI+I DP RPG+H +++++K + I+YVSCNP T DL
Sbjct: 366 AGDVAKVIKDVKQ---KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDL 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YL I YKL+ ++ +DMFPHTPH+ECV +E
Sbjct: 423 KYL--------IDNGYKLEKVKGMDMFPHTPHVECVVKIE 454
>gi|385812618|ref|YP_005849009.1| TrmA family tRNA (Uracil-5-)-methyltransferase [Lactobacillus
fermentum CECT 5716]
gi|299783515|gb|ADJ41513.1| TrmA family tRNA (Uracil-5-)-methyltransferase [Lactobacillus
fermentum CECT 5716]
Length = 469
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 130/220 (59%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N +G + + L+G+ I +TL G+ F IS SF+Q N Q E LY+ +
Sbjct: 244 VQNVNDKRTNVILGTKNHLLWGEPTIHDTLLGIDFTISPLSFYQVNPQQTERLYQTAIEN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL DGS+ V+D +CG GTI L +A+ KHVYG E+VP AI+DA +NA N I NATFV
Sbjct: 304 AGL--DGSKTVIDAYCGIGTISLAVAKHAKHVYGVEIVPAAIADAKQNAANNGIENATFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD+VI DP R G+ +LI+ K+ +++YVSCNPAT RDL
Sbjct: 362 VGKAEEQFAKWQAEGLKPDVVIVDPPRKGLDAQLIEATGKMAPQKVIYVSCNPATLVRDL 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+G + K +QPVD FP T H+E V +LE
Sbjct: 422 QRFAE-------QGYHVTKPIQPVDQFPQTTHVESVTVLE 454
>gi|260592299|ref|ZP_05857757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella veroralis
F0319]
gi|260535749|gb|EEX18366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella veroralis
F0319]
Length = 474
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 131/219 (59%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + + E TLY G +I ET+ L F++S SF+QTNT QA LY + + A
Sbjct: 265 VDNQKGNDTFNDLELTLYKGNDHIFETMEDLKFKVSPKSFYQTNTEQAYHLYSVAREFAN 324
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E+V DL+ GTGTI +A+ + V G E VP+AI DA N+ +NNI N F G
Sbjct: 325 LT--GDELVYDLYTGTGTIANFIAKKARKVIGIEYVPEAIEDAKVNSNVNNIDNTLFYAG 382
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I +F +PD++I+DP R GMH ++ +L RIVYVSCNPAT ARDL
Sbjct: 383 DMKDILTEEFIQKHGRPDVIITDPPRAGMHPDVVNVILGASPKRIVYVSCNPATQARDLA 442
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YK+ ++QPVDMFPHTPH+E V LLE
Sbjct: 443 LL---------DADYKVAAVQPVDMFPHTPHVENVVLLE 472
>gi|295133700|ref|YP_003584376.1| tRNA (uracil-5-)-methyltransferase [Zunongwangia profunda SM-A87]
gi|294981715|gb|ADF52180.1| tRNA (uracil-5-)-methyltransferase [Zunongwangia profunda SM-A87]
Length = 469
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 133/214 (62%), Gaps = 13/214 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
GN ++ ++E Y G+ +I E + GLTF+I+A SF+QTN+ QA LYK+ + AGL+ G
Sbjct: 265 GNDTIYDQEVICYKGRDHIFEEMEGLTFKINAKSFYQTNSAQAYELYKITREFAGLK--G 322
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
E+V DL+ GTGTI +A+ K V G E VP+AISDA NAK N I+N F GD+ K+
Sbjct: 323 EELVYDLYTGTGTIAQFVAKNAKEVIGVEAVPEAISDAIENAKRNGITNTKFFAGDMKKV 382
Query: 128 -GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
+F N PD++I+DP R GMH ++ ++ + +IVYVSCN AT ARDL L
Sbjct: 383 FTQNFINKHGHPDVIITDPPRDGMHKDVVAQIINILPKKIVYVSCNSATQARDLALLDE- 441
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+ +QPVDMFP T H+E V LE
Sbjct: 442 --------YYKVTKVQPVDMFPQTFHVENVVCLE 467
>gi|345018106|ref|YP_004820459.1| TrmA family RNA methyltransferase [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033449|gb|AEM79175.1| RNA methyltransferase, TrmA family [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 455
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 130/217 (59%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+NT N +GEE T+YG NI + ++ + F+IS SFFQ N Q EVLY + A
Sbjct: 244 NINTKKTNVIMGEENITIYGSDNIIDYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYAD 303
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G E V+D++CG GTI L A+ VYG E V QA+ DA RNA +N I N F+ G
Sbjct: 304 LK--GEETVIDVYCGIGTISLFAAQKAAFVYGIEAVHQAVEDAKRNAYINGIKNVEFISG 361
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
D K+ + + K D+VI DP R G +++ ++K+ +IVYVSCNP+T ARDL Y
Sbjct: 362 DAEKVMPELADKGVKADVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLARDLRY 421
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L + N YK +QPVDMFP+T H+E V L+
Sbjct: 422 L-----EDN---GYKTMEVQPVDMFPYTHHVESVALV 450
>gi|331702034|ref|YP_004398993.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL
B-30929]
gi|329129377|gb|AEB73930.1| RNA methyltransferase, TrmA family [Lactobacillus buchneri NRRL
B-30929]
Length = 456
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 129/220 (58%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N +G++ L GKS I +TL GL F ISA+SF+Q N Q E LY L
Sbjct: 243 VQNVNPEKTNALMGKKNKVLAGKSTIEDTLLGLKFDISASSFYQVNPVQTEKLYDLATKK 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D ++V+D +CG GTI L++AR K VYG E+VP+A+ DA +NAKLNN++N FV
Sbjct: 303 ADLSAD--DVVIDAYCGIGTISLSMARVAKQVYGVEIVPEAVEDAKKNAKLNNLTNVHFV 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++ DP R G+ LI ++K++ R+VYVSCNPAT ARD+
Sbjct: 361 ASKAETQMAKWQEDGLKPDVISVDPPRKGLDASLIDSVVKMQPKRVVYVSCNPATLARDV 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+G + +QPVD FP T H+E + +LE
Sbjct: 421 KLFTE-------QGYQVNQPIQPVDQFPQTVHVESITVLE 453
>gi|392962789|ref|ZP_10328218.1| RNA methyltransferase, TrmA family [Pelosinus fermentans DSM 17108]
gi|421053147|ref|ZP_15516129.1| RNA methyltransferase, TrmA family [Pelosinus fermentans B4]
gi|421066327|ref|ZP_15527949.1| RNA methyltransferase, TrmA family [Pelosinus fermentans A12]
gi|421073867|ref|ZP_15534916.1| RNA methyltransferase, TrmA family [Pelosinus fermentans A11]
gi|392442188|gb|EIW19778.1| RNA methyltransferase, TrmA family [Pelosinus fermentans B4]
gi|392443856|gb|EIW21365.1| RNA methyltransferase, TrmA family [Pelosinus fermentans A11]
gi|392452030|gb|EIW28999.1| RNA methyltransferase, TrmA family [Pelosinus fermentans DSM 17108]
gi|392456885|gb|EIW33615.1| RNA methyltransferase, TrmA family [Pelosinus fermentans A12]
Length = 460
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 135/220 (61%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N++ N +G TL+G++ IT+TL TF ISA SFFQ NT QAEVLY +
Sbjct: 246 IQNINSNKTNVILGNRTITLWGENYITDTLGEFTFHISARSFFQVNTKQAEVLYNKAVEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E V+D +CGTGTI L LAR K VYG E+V AI DA NA++N +SN F+
Sbjct: 306 AGL--SGEETVIDAYCGTGTITLFLARHAKKVYGIEIVAPAIRDAQHNAQMNQVSNVEFI 363
Query: 121 QGD-LNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD ++ + F +P +++ DP R G +++ ++A RIVYVSCNP++ ARD
Sbjct: 364 VGDAVDSMPKMFKEGI-RPQVIVVDPPRAGCDKLVLETFAAMEAKRIVYVSCNPSSLARD 422
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L L +G YK + +QP+DMF HT H+ECV L
Sbjct: 423 LAIL-EELG-------YKAQEIQPIDMFSHTYHVECVARL 454
>gi|150007675|ref|YP_001302418.1| RNA methyltransferase [Parabacteroides distasonis ATCC 8503]
gi|255013620|ref|ZP_05285746.1| RNA methyltransferase [Bacteroides sp. 2_1_7]
gi|262381816|ref|ZP_06074954.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
2_1_33B]
gi|298375621|ref|ZP_06985578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
3_1_19]
gi|301310290|ref|ZP_07216229.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 20_3]
gi|410103523|ref|ZP_11298444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp.
D25]
gi|423331831|ref|ZP_17309615.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
distasonis CL03T12C09]
gi|423336531|ref|ZP_17314278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
distasonis CL09T03C24]
gi|149936099|gb|ABR42796.1| RNA methyltransferase [Parabacteroides distasonis ATCC 8503]
gi|262296993|gb|EEY84923.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
2_1_33B]
gi|298268121|gb|EFI09777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
3_1_19]
gi|300831864|gb|EFK62495.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 20_3]
gi|409229672|gb|EKN22544.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
distasonis CL03T12C09]
gi|409236252|gb|EKN29059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp.
D25]
gi|409241006|gb|EKN33780.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
distasonis CL09T03C24]
Length = 470
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 134/221 (60%), Gaps = 12/221 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M +N +T +E GK +I E + GL F++ SF+QTN+ QA LYK+ +
Sbjct: 259 MYVINGKCNDTITDQEVLVFKGKDHIIEEMEGLQFKVGPKSFYQTNSEQAYNLYKVAREF 318
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G+E+V DL+ GTGTI ++R K V G E VP+AI DA N+ LN+I N F
Sbjct: 319 AGL--TGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSALNHIENTLFY 376
Query: 121 QGDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD+ I DF N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARD
Sbjct: 377 AGDMKDILTQDFINQHGRPDVIITDPPRAGMHDDVINTILFAEPERIVYVSCNPATQARD 436
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L L ++K Y +K ++PVDMFPHT H+E V LLE
Sbjct: 437 LSLL-------SVK--YSVKKVRPVDMFPHTHHVENVVLLE 468
>gi|256839936|ref|ZP_05545445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp.
D13]
gi|256738866|gb|EEU52191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp.
D13]
Length = 470
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 134/221 (60%), Gaps = 12/221 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M +N +T +E GK +I E + GL F++ SF+QTN+ QA LYK+ +
Sbjct: 259 MYVINGKCNDTITDQEVLVFKGKDHIIEEMEGLQFKVGPKSFYQTNSEQAYNLYKVAREF 318
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G+E+V DL+ GTGTI ++R K V G E VP+AI DA N+ LN+I N F
Sbjct: 319 AGL--TGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSALNHIENTLFY 376
Query: 121 QGDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD+ I DF N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARD
Sbjct: 377 AGDMKDILTQDFINQHGRPDVIITDPPRAGMHDDVINTILFAEPERIVYVSCNPATQARD 436
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L L ++K Y +K ++PVDMFPHT H+E V LLE
Sbjct: 437 LSLL-------SVK--YSVKKVRPVDMFPHTHHVENVVLLE 468
>gi|259502578|ref|ZP_05745480.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
DSM 16041]
gi|259169468|gb|EEW53963.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus antri
DSM 16041]
Length = 479
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 126/220 (57%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G+ + TL+GK I + L G+ F IS SF+Q N Q E LY+ D
Sbjct: 265 VQNINDKRTNKLLGDTDKTLWGKDEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIDS 324
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL DGS+ V+D +CG GTI L +AR K VYG E+VP AI DA NAK N I NA FV
Sbjct: 325 AGL--DGSQTVIDAYCGIGTISLAVARHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFV 382
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + A KPD+VI DP R G+ LI+ ++ +++YVSCNPAT RD+
Sbjct: 383 VGKAEDQFAKWQAAGLKPDVVIVDPPRKGLAESLIEATGEMAPQKVIYVSCNPATLVRDI 442
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G + +K +QPVD FP T H+E V +LE
Sbjct: 443 QRFAD-------VGYHVVKPIQPVDQFPQTTHVESVTVLE 475
>gi|227509977|ref|ZP_03940026.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
gi|227190583|gb|EEI70650.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
Length = 456
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 133/224 (59%), Gaps = 13/224 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N+ +G + L+GK IT+ L GL F+IS NSF+Q N Q E LYKL
Sbjct: 243 VQNINPKNTNSLMGNQNKVLWGKGTITDQLMGLDFEISPNSFYQVNPIQTEKLYKLAIQK 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D +CG GTI L+LA+ VK VYG E+VP+AI DA RNA +N ISN V
Sbjct: 303 AQLNKD--DIVIDAYCGIGTISLSLAKVVKKVYGVEIVPEAIEDAKRNAHINKISNCKVV 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ G + A KPD+++ DP R G+ LI+ + ++ R++YVSCNPAT ARD
Sbjct: 361 VAKAEEQLGKWQKAGLKPDVIVVDPPRKGLDESLIESVAEMSPQRLIYVSCNPATLARDA 420
Query: 181 DYLC-HGVGDQNIKGCYKL-KSLQPVDMFPHTPHIECVCLLELS 222
HG Y++ + +QPVD FP T H+E V + E S
Sbjct: 421 KLFAEHG---------YQINQPIQPVDQFPQTVHVESVTVFEKS 455
>gi|421060616|ref|ZP_15523071.1| RNA methyltransferase, TrmA family, partial [Pelosinus fermentans
B3]
gi|392455922|gb|EIW32692.1| RNA methyltransferase, TrmA family, partial [Pelosinus fermentans
B3]
Length = 387
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 135/220 (61%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N++ N +G TL+G++ IT+TL TF ISA SFFQ NT QAEVLY +
Sbjct: 173 IQNINSNKTNVILGNRTITLWGENYITDTLGEFTFHISARSFFQVNTKQAEVLYNKAVEY 232
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E V+D +CGTGTI L LAR K VYG E+V AI DA NA++N +SN F+
Sbjct: 233 AGL--SGEETVIDAYCGTGTITLFLARHAKKVYGIEIVAPAIRDAQHNAQMNQVSNVEFI 290
Query: 121 QGD-LNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD ++ + F +P +++ DP R G +++ ++A RIVYVSCNP++ ARD
Sbjct: 291 VGDAVDSMPKMFKEGI-RPQVIVVDPPRAGCDKLVLETFAAMEAKRIVYVSCNPSSLARD 349
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L L +G YK + +QP+DMF HT H+ECV L
Sbjct: 350 LAIL-EELG-------YKAQEIQPIDMFSHTYHVECVARL 381
>gi|386729585|ref|YP_006195968.1| 23S rRNA m(5)U1939 methyltransferase [Staphylococcus aureus subsp.
aureus 71193]
gi|387603229|ref|YP_005734750.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus ST398]
gi|404479243|ref|YP_006710673.1| RNA methyltransferase [Staphylococcus aureus 08BA02176]
gi|418311506|ref|ZP_12923029.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21331]
gi|418980102|ref|ZP_13527889.1| 23S rRNA m(5)U 1939 methyltransferase [Staphylococcus aureus subsp.
aureus DR10]
gi|283471167|emb|CAQ50378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus ST398]
gi|365234162|gb|EHM75102.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21331]
gi|379992133|gb|EIA13591.1| 23S rRNA m(5)U 1939 methyltransferase [Staphylococcus aureus subsp.
aureus DR10]
gi|384230878|gb|AFH70125.1| 23S rRNA m(5)U 1939 methyltransferase [Staphylococcus aureus subsp.
aureus 71193]
gi|404440732|gb|AFR73925.1| putative RNA methyltransferase [Staphylococcus aureus 08BA02176]
Length = 453
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 127/220 (57%), Gaps = 11/220 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 245 NINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAE 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+VLD +CGTGTIGL +A KHVYG EVVP AI DA +NA +N +N TFV G
Sbjct: 305 LT--GNEVVLDTYCGTGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 363 KAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALL 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 423 LSEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|422809833|ref|ZP_16858244.1| RNA methyltransferase, TrmA family [Listeria monocytogenes FSL
J1-208]
gi|378752152|gb|EHY62738.1| RNA methyltransferase, TrmA family [Listeria monocytogenes FSL
J1-208]
Length = 453
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 132/222 (59%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A + D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPAWYKAGIEADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G Y K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILT--------EGGYVAKRVQPVDMFPMTTHIEAVTVLHLN 453
>gi|421076571|ref|ZP_15537553.1| RNA methyltransferase, TrmA family [Pelosinus fermentans JBW45]
gi|392525183|gb|EIW48327.1| RNA methyltransferase, TrmA family [Pelosinus fermentans JBW45]
Length = 459
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 136/221 (61%), Gaps = 12/221 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N++ N +G TL+G++ IT+TL TF ISA SFFQ NT QAEVLY +
Sbjct: 246 IQNINSNKTNVILGNRTRTLWGENYITDTLGEFTFHISARSFFQVNTKQAEVLYNKAVEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E V+D +CGTGTI L LAR K VYG E+V AI DA NA++N ISN F+
Sbjct: 306 AGL--SGEETVIDAYCGTGTITLFLARHAKKVYGIEIVAPAIRDAQHNAQMNQISNVEFI 363
Query: 121 QGD-LNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD ++ + F +P +++ DP R G +++ ++A RIVYVSCNP++ ARD
Sbjct: 364 VGDAIDSMPKMFKEGI-RPQVIVVDPPRAGCDKLVLETFAAMQAKRIVYVSCNPSSLARD 422
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L L +G YK + +QP+DMF HT H+E + LL+
Sbjct: 423 LA-LLEELG-------YKTQEIQPIDMFSHTYHVETIVLLQ 455
>gi|392939253|ref|ZP_10304897.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermoanaerobacter
siderophilus SR4]
gi|392291003|gb|EIV99446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermoanaerobacter
siderophilus SR4]
Length = 455
Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 130/217 (59%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+NT N +GEE T+YG NI + ++ + F+IS SFFQ N Q EVLY + A
Sbjct: 244 NINTKKTNVIMGEENITIYGSDNIIDYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYAD 303
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G E V+D++CG GTI L A+ VYG E V QA+ DA RNA +N I N F+ G
Sbjct: 304 LK--GEETVIDVYCGIGTISLFAAQKAAFVYGIEAVYQAVEDAKRNAYINGIKNVEFISG 361
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
D K+ + + K D+VI DP R G +++ ++K+ +IVYVSCNP+T ARDL Y
Sbjct: 362 DAEKVMPELADKGVKADVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLARDLRY 421
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L + N YK +QPVDMFP+T H+E V L+
Sbjct: 422 L-----EDN---GYKTMEVQPVDMFPYTHHVESVALV 450
>gi|410029257|ref|ZP_11279093.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinilabilia sp. AK2]
Length = 468
Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 129/220 (58%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N T +E T G+ I E + GL FQI SF+QTN+ QA LYK+ + A L
Sbjct: 259 INLKKNETFHDQEVITFQGRDFIEEKMEGLRFQIGPKSFYQTNSKQAYELYKVAREFASL 318
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
+G E+V DL+ GTGTI +A+ K V G E V AI+DA N+K+N I N F GD
Sbjct: 319 --NGDEVVYDLYTGTGTIANFVAKMAKQVIGIEYVEAAIADAKINSKINGIKNTLFYAGD 376
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I +F + P+PD++I+DP R GMH ++ LL+L+AP IVYVSCNPAT ARD+
Sbjct: 377 MKDILNEEFLSNHPRPDVIITDPPRAGMHEDVVNMLLRLEAPNIVYVSCNPATQARDIAL 436
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y++ +QPVDMFP T H+E V L L
Sbjct: 437 LSEK---------YQIDKIQPVDMFPQTYHVENVVKLTLK 467
>gi|348027261|ref|YP_004767066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera elsdenii
DSM 20460]
gi|341823315|emb|CCC74239.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Megasphaera elsdenii
DSM 20460]
Length = 461
Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 135/220 (61%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N +G + T+YGK I +++ LTF ISA SFFQ N+ QA+ LY+ D
Sbjct: 248 VQNVNKRHTNVILGPKTKTVYGKGTIHDSIGPLTFHISAQSFFQVNSEQAQRLYETALDF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V D++CGTGTI L LA+ K VYG E+V AI DA RNAK N++ NA F+
Sbjct: 308 ADLK--GGETVADVYCGTGTITLFLAQKAKQVYGIEIVAPAIRDAVRNAKDNHVGNAQFI 365
Query: 121 QGD-LNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD + K+ N +PD+++ DP R G ++K + + K R+VYVSCNPAT ARD
Sbjct: 366 LGDAIYKLPELIKNGI-RPDVIVLDPPRAGCGEPVLKAIAQSKPKRVVYVSCNPATLARD 424
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L YL DQ+ Y +QPVDMFP T H+E V L+
Sbjct: 425 LAYL-----DQH---GYHTAKVQPVDMFPRTHHVESVALM 456
>gi|302837995|ref|XP_002950556.1| hypothetical protein VOLCADRAFT_60616 [Volvox carteri f.
nagariensis]
gi|300264105|gb|EFJ48302.1| hypothetical protein VOLCADRAFT_60616 [Volvox carteri f.
nagariensis]
Length = 206
Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 122/200 (61%), Gaps = 6/200 (3%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G I + L GL F+IS SFFQTNT QAEVLY ++ AGLR + VLDL+CGTGTI
Sbjct: 1 GTPYIHDVLGGLKFRISPGSFFQTNTRQAEVLYDVVRRAAGLRPGAVDTVLDLYCGTGTI 60
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV-QGDLNKIGGDFGNAFPKPDI 140
GL+LA + V G EV+ AI DA NA LN ISN F+ A PD+
Sbjct: 61 GLSLAGECRRVLGVEVLESAIEDARANAALNAISNVEFLCADAPAAAAAASPTAVTTPDV 120
Query: 141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKS 200
VI DP R G+ + FL + A R+VYVSCN AT ARDLD LC+G G ++L S
Sbjct: 121 VIVDPARGGLTLDAASFLSRCGARRVVYVSCNVATQARDLDRLCNGSGAP-----FRLVS 175
Query: 201 LQPVDMFPHTPHIECVCLLE 220
+QPVDMFPHT H+E V +L+
Sbjct: 176 VQPVDMFPHTDHVETVAVLD 195
>gi|417886523|ref|ZP_12530667.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
F0423]
gi|341592914|gb|EGS35771.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus oris
F0423]
Length = 456
Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 125/220 (56%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G+ TL+GK I + L G+ F IS SF+Q N Q E LY+ D
Sbjct: 244 VQNINDKRTNKLLGDTNKTLWGKDEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIDN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL DGS+ V+D +CG GTI L +A+ K VYG E+VP AI DA NAK N I NA FV
Sbjct: 304 AGL--DGSQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAEFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + A KPD+VI DP R G+ LI+ K+ +++YVSCNPAT RD+
Sbjct: 362 VGKAEEQFAKWQAAGLKPDVVIVDPPRKGLAESLIEATGKMAPQKVIYVSCNPATLVRDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G + K +QPVD FP T H+E V LLE
Sbjct: 422 QRFAE-------VGYHVTKPIQPVDQFPQTTHVESVTLLE 454
>gi|313674919|ref|YP_004052915.1| 23S rRNA m(5)u-1939 methyltransferase [Marivirga tractuosa DSM
4126]
gi|312941617|gb|ADR20807.1| 23S rRNA m(5)U-1939 methyltransferase [Marivirga tractuosa DSM
4126]
Length = 466
Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/204 (49%), Positives = 122/204 (59%), Gaps = 12/204 (5%)
Query: 20 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79
YGK +I E + GL F+I SF+QTN+ QA LYK+ D A L+ G E V DL+ GTG
Sbjct: 274 FYGKDHIIEEMEGLQFKIGPKSFYQTNSDQAYELYKVARDFANLK--GEETVYDLYTGTG 331
Query: 80 TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD-FGNAFPKP 138
TI LA+ K V G E V +AI DA N+KLN I N F GD+ + D F K
Sbjct: 332 TIANFLAKSAKKVIGVEYVTEAIEDAKVNSKLNEIENTEFFSGDMKDVFNDEFLVEHGKA 391
Query: 139 DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKL 198
D++I+DP R GMH +IK LL + A +IVYVSCNPAT ARDL L YK+
Sbjct: 392 DVIITDPPRAGMHPDVIKTLLNIGAEKIVYVSCNPATQARDLALLDEK---------YKV 442
Query: 199 KSLQPVDMFPHTPHIECVCLLELS 222
+QPVDMFP T H+E V LLEL
Sbjct: 443 TKVQPVDMFPQTHHVENVVLLELK 466
>gi|86143081|ref|ZP_01061503.1| putative RNA methyltransferase [Leeuwenhoekiella blandensis MED217]
gi|85830526|gb|EAQ48985.1| putative RNA methyltransferase [Leeuwenhoekiella blandensis MED217]
Length = 457
Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 13/216 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
GN ++ +++ Y G+ +I E + GL F+I+A SF+QTN+ QA LYK+ D A L+ G
Sbjct: 253 GNDTIYDQDIICYAGRDHIFEEMEGLKFKINAKSFYQTNSEQAYELYKITRDFAELK--G 310
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
E V DL+ GTGTI +A+ K V G E VP AI A NA+LN I N F GD+ +
Sbjct: 311 DETVFDLYTGTGTIAQFVAKKAKKVIGVEAVPDAIIAAKENAQLNEIENVEFYVGDMKNV 370
Query: 128 GGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
D F +PD+VI+DP R GMH ++ L+K+KA RIVYVSCN AT ARDL L
Sbjct: 371 FNDAFIAQHGQPDVVITDPPRDGMHKDVVAQLIKIKADRIVYVSCNSATQARDLALL--- 427
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
YK++ +QPVDMFP T H+E V LL+L
Sbjct: 428 ------DPYYKVERVQPVDMFPQTHHVENVVLLKLK 457
>gi|310827128|ref|YP_003959485.1| RNA methyltransferase [Eubacterium limosum KIST612]
gi|308738862|gb|ADO36522.1| RNA methyltransferase [Eubacterium limosum KIST612]
Length = 446
Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 127/217 (58%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVNT+ GN +G E + L G I E + L+F IS NSFFQ NT Q +VLY L++ A
Sbjct: 236 NVNTTRGNAVLGRENHLLLGTPQIEERIGDLSFLISPNSFFQVNTRQTKVLYDLVKRMAT 295
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E + DL+CGTGTIGL LAR VYG E+V A+ DA NA+ N I N F+QG
Sbjct: 296 L--TGAETLFDLYCGTGTIGLYLAREAARVYGIEIVENAVLDAQENAERNQIKNIRFIQG 353
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
PD+++ DP R G L++ + L P++VYVSCNP+T ARDL
Sbjct: 354 KSETEAPKLAEEGVHPDVIVLDPPRKGCDPALLEMIENLSVPKVVYVSCNPSTLARDLKI 413
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L + Y+++ +QPVD+FP T H+E V L+
Sbjct: 414 LR--------EYGYQVQEVQPVDLFPGTGHVETVVLM 442
>gi|422422456|ref|ZP_16499409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
S4-171]
gi|313637426|gb|EFS02888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
S4-171]
Length = 453
Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ +
Sbjct: 242 VQNINPQKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIEA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LNN+SN TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLSNTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPTWYKAGIVADVLVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y+ +QPVDMFP T HIE V +L L
Sbjct: 420 KILSD--------GGYEANQVQPVDMFPMTTHIEAVTVLNLK 453
>gi|408371912|ref|ZP_11169667.1| RNA methyltransferase [Galbibacter sp. ck-I2-15]
gi|407742648|gb|EKF54240.1| RNA methyltransferase [Galbibacter sp. ck-I2-15]
Length = 469
Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 131/213 (61%), Gaps = 13/213 (6%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N ++ +++ Y G+ +I E + GL F+I+A SF+QTN+ QA LYK+ D A L+ G
Sbjct: 266 NDTIYDQDVICYSGRDHIFEEMEGLKFKINAKSFYQTNSLQAYQLYKITRDFADLK--GD 323
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI- 127
EIV DL+ GTGTI +AR K V G E VP+AI DA NA+ N I N F GD+ +
Sbjct: 324 EIVYDLYTGTGTIAQFIARKAKKVVGVEAVPEAIEDAKANAQFNTIENVRFYAGDMKAVF 383
Query: 128 GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 187
+F + KPD+VI+DP R GMH ++ LLK+ A +IVYVSCN AT ARDL + H
Sbjct: 384 NEEFIASNGKPDVVITDPPRDGMHKDVVAQLLKIGARKIVYVSCNSATQARDLALMDH-- 441
Query: 188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+ +Q VDMFP T H+E V LLE
Sbjct: 442 -------MYKITKVQAVDMFPQTHHVENVVLLE 467
>gi|333030806|ref|ZP_08458867.1| RNA methyltransferase, TrmA family [Bacteroides coprosuis DSM
18011]
gi|332741403|gb|EGJ71885.1| RNA methyltransferase, TrmA family [Bacteroides coprosuis DSM
18011]
Length = 475
Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 132/218 (60%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N + + ++ + GK ++ E + GL F++ SF+QTN+ QA LYK+ + A L
Sbjct: 266 INNKMNDVYTDQDVFLYKGKDHMIEEMEGLQFKVGPKSFYQTNSEQAYELYKVARNFAQL 325
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI +++ K V G E VP+AI DA N+++N+I N F GD
Sbjct: 326 T--GEELVYDLYTGTGTIANFVSKQAKKVIGIEYVPEAIEDAKINSEINHIDNTLFYAGD 383
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I DF N +PD++I+DP R GMH +I LL + RIVYVSCNPAT ARDL
Sbjct: 384 MKDILTQDFINTHGQPDVIITDPPRAGMHQDVIDVLLFAEPKRIVYVSCNPATQARDL-- 441
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + YK+ ++QPVDMFPHT H+E V LLE
Sbjct: 442 -------QLLDNKYKVAAIQPVDMFPHTHHVENVVLLE 472
>gi|289435088|ref|YP_003464960.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171332|emb|CBH27874.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 453
Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ +
Sbjct: 242 VQNINPQKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIEA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LNN+SN TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARTNAELNNLSNTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPTWYKAGIVADVLVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y+ +QPVDMFP T HIE V +L L
Sbjct: 420 KILSD--------GGYEANQVQPVDMFPMTTHIEAVTVLNLK 453
>gi|344203582|ref|YP_004788725.1| TrmA family RNA methyltransferase [Muricauda ruestringensis DSM
13258]
gi|343955504|gb|AEM71303.1| RNA methyltransferase, TrmA family [Muricauda ruestringensis DSM
13258]
Length = 470
Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 137/216 (63%), Gaps = 13/216 (6%)
Query: 7 SVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRD 65
S GN ++ ++E + G+ +I E + GL F+I+A SF+QTN+ QA LYK+ + A L
Sbjct: 263 SKGNDTIYDQEVICFAGRDHIFEEMEGLQFKINAKSFYQTNSEQAYALYKVARNFANL-- 320
Query: 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
G+E+V DL+ GTGTI +++ K V G E VP+AI DA NA NNISNA F GD+
Sbjct: 321 TGNELVYDLYTGTGTIAQFISKNAKKVVGVESVPEAIEDAKSNALHNNISNAEFFVGDMK 380
Query: 126 KIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184
+ D F + +PD++I+DP R GMH +++ LL++ P+IVYVSCN AT ARDL +
Sbjct: 381 NVFNDSFISEHGQPDVIITDPPRDGMHKQVVGQLLQVAPPKIVYVSCNSATQARDLALM- 439
Query: 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
K Y++ +QPVDMFP T H+E V LLE
Sbjct: 440 --------KEKYEVTKVQPVDMFPQTHHVENVVLLE 467
>gi|297528755|ref|YP_003670030.1| TrmA family RNA methyltransferase [Geobacillus sp. C56-T3]
gi|297252007|gb|ADI25453.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
Length = 457
Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 126/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G + L+G IT+ + G+ F ISA SF+Q N Q +VLY +
Sbjct: 246 VQNVNPERTNVIFGAKTRVLWGSEFITDRIGGIQFAISARSFYQVNPEQTKVLYDKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LAR KHVYG E+VP+AI DA RNAK N I N TF
Sbjct: 306 AEL--TGRETVIDAYCGIGTISLFLARKAKHVYGVEIVPEAIEDAKRNAKPNGIQNVTFE 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + + D ++ DP R G L++ ++ +K PR+VYVSCNPAT ARDL
Sbjct: 364 VGAAEDVIPRWYEEGIRADCLVVDPPRKGCDASLLETIIAMKPPRVVYVSCNPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y+ +QPVDMFPHT H+ECV + L
Sbjct: 424 RILE--------DGGYETIEVQPVDMFPHTAHVECVAKIRL 456
>gi|384550713|ref|YP_005739965.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302333562|gb|ADL23755.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 453
Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 127/221 (57%), Gaps = 11/221 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 244 QNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV
Sbjct: 304 QLT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD+
Sbjct: 362 GKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDVL 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 422 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|408355817|ref|YP_006844348.1| RNA methyltransferase [Amphibacillus xylanus NBRC 15112]
gi|407726588|dbj|BAM46586.1| putative RNA methyltransferase [Amphibacillus xylanus NBRC 15112]
Length = 460
Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 134/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M+NVN N +G++ L+G++ I +T+ + F ISA SF+Q N Q +VLY +
Sbjct: 247 MHNVNPDRTNVILGKKIKCLWGEAYIYDTIGDVKFAISALSFYQINPKQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ K VYG E+VPQAI DA +NAKLN++ N F+
Sbjct: 307 ANLT--GGETVIDAYCGIGSISLFLAQKAKKVYGVEIVPQAIQDAKKNAKLNDMDNTEFI 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + KPD+++ DP R G L+ ++++ RIVYVSCNP+T ARDL
Sbjct: 365 VGQAEEVMPAWKENGLKPDVIVVDPPRKGCDEALLHAMVEMNPKRIVYVSCNPSTFARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKLK +QPVDMFP T H+ECV L+
Sbjct: 425 VILT--------EGGYKLKKVQPVDMFPQTSHVECVALM 455
>gi|422409995|ref|ZP_16486956.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
FSL F2-208]
gi|313608260|gb|EFR84264.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
FSL F2-208]
Length = 453
Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 131/222 (59%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A + D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPAWYKAGIEADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILT--------DGGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453
>gi|110638905|ref|YP_679114.1| RNA methyltransferase [Cytophaga hutchinsonii ATCC 33406]
gi|110281586|gb|ABG59772.1| 23S rRNA m(5)U-1939 methyltransferase [Cytophaga hutchinsonii ATCC
33406]
Length = 479
Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 129/217 (59%), Gaps = 12/217 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+NT +T + + +G I E + GL F++ SF+QTN+ QA LYK+ D AGL
Sbjct: 257 INTKKNDTYSDLDVHVFHGPGYIQEEMEGLIFRVGPKSFYQTNSDQAYELYKVTRDFAGL 316
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +A+ K V G E V AI DA N+K+NNI N F GD
Sbjct: 317 T--GNEVVYDLYTGTGTIANFVAKKAKQVIGIEYVADAIEDAKVNSKINNIDNTLFYAGD 374
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + +F +PD++I+DP R GMH +I LL + AP+IVYVSCNPAT ARDL
Sbjct: 375 MKDVLNKEFIAQHQRPDVIITDPPRAGMHEDVINTLLFIGAPKIVYVSCNPATQARDLSM 434
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y++ +QPVDMFPHT H+E V LL
Sbjct: 435 L---------DSDYEVSRIQPVDMFPHTAHVENVVLL 462
>gi|404486106|ref|ZP_11021300.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Barnesiella
intestinihominis YIT 11860]
gi|404337434|gb|EJZ63888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Barnesiella
intestinihominis YIT 11860]
Length = 461
Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 129/217 (59%), Gaps = 12/217 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN +T +E G+ I E++ GL F+I SF+QTN+ QA LYK+ + AGL
Sbjct: 252 VNQKRNDTIADQEVCVFRGRDYIWESMEGLRFKIGPKSFYQTNSEQAYELYKVAREFAGL 311
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +AR + V G E VP+AI DA NA++N + N F GD
Sbjct: 312 --TGTELVYDLYTGTGTIANFVARQSRKVVGIEYVPEAIEDAKENARINGLDNTLFYAGD 369
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I DF +P+++I+DP R GMH +IK +L RIVYVSCNPAT ARDL
Sbjct: 370 MKDILTEDFIEEHGRPEVIITDPPRAGMHDDVIKTILFASPERIVYVSCNPATQARDLSL 429
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L YK++ +QPVDMFPHT H+E V LL
Sbjct: 430 L---------DAKYKVERVQPVDMFPHTHHVENVVLL 457
>gi|217964101|ref|YP_002349779.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
HCC23]
gi|290893407|ref|ZP_06556392.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|386008521|ref|YP_005926799.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes L99]
gi|386027126|ref|YP_005947902.1| RNA methyltransferase [Listeria monocytogenes M7]
gi|404408192|ref|YP_006690907.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC2376]
gi|217333371|gb|ACK39165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
HCC23]
gi|290557058|gb|EFD90587.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|307571331|emb|CAR84510.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes L99]
gi|336023707|gb|AEH92844.1| RNA methyltransferase [Listeria monocytogenes M7]
gi|404242341|emb|CBY63741.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC2376]
Length = 453
Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 131/222 (59%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A + D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPAWYKAGIEADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILT--------DGGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453
>gi|305666421|ref|YP_003862708.1| putative RNA methyltransferase [Maribacter sp. HTCC2170]
gi|88708684|gb|EAR00919.1| putative RNA methyltransferase [Maribacter sp. HTCC2170]
Length = 469
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 130/218 (59%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T +E G+ +I E + GL F+I+A SF+QTN+ QA LYK+ D AG+
Sbjct: 261 INQKQNDTIYDQEIVCFAGRDHIIEEMEGLQFKINAKSFYQTNSEQAYELYKVARDFAGI 320
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +++ K V G E VP+AI DA NA N I N F GD
Sbjct: 321 T--GNELVYDLYTGTGTIAQFVSKKAKKVIGIESVPEAIEDAKANAANNKIDNVDFFVGD 378
Query: 124 L-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ N DF NA PDI+I+DP R GMH +++ LL + A ++VYVSCN AT ARDL
Sbjct: 379 MKNVFNEDFINAHGSPDIIITDPPRDGMHKDVVQQLLNIGAKKVVYVSCNSATQARDLAL 438
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ H YK+ +Q VDMFP T H+E V LLE
Sbjct: 439 MKH---------MYKVSKVQAVDMFPQTHHVENVVLLE 467
>gi|417643628|ref|ZP_12293665.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus warneri
VCU121]
gi|330685548|gb|EGG97194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU121]
Length = 453
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 126/219 (57%), Gaps = 11/219 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N + N +G + TLYG+ I + L +TF IS SF+Q N+HQ E LY+ D A
Sbjct: 244 QNINDAHSNVIMGPQSITLYGEEEIEDQLSEVTFNISDQSFYQINSHQTEKLYQQALDYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTI + +A +HVYG EVVP AI+DA +NA N + N TFV
Sbjct: 304 QLT--GDEIVLDTYCGIGTIAIYMAENARHVYGVEVVPSAINDANQNATKNQLENTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + +PD+V+ DP R G ++ +L+L RIVY+SCNP+T RD
Sbjct: 362 GKAEEVILKWKAEGIRPDVVMVDPPRKGCDETFLETILELNPKRIVYISCNPSTQQRDAH 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L H Y LK + PVDMFP T HIE V L E
Sbjct: 422 ILNHQ---------YDLKEITPVDMFPQTTHIETVALFE 451
>gi|445059259|ref|YP_007384663.1| RNA methyltransferase [Staphylococcus warneri SG1]
gi|443425316|gb|AGC90219.1| RNA methyltransferase [Staphylococcus warneri SG1]
Length = 453
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 126/219 (57%), Gaps = 11/219 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N + N +G + TLYG+ I + L +TF IS SF+Q N+HQ E LY+ D A
Sbjct: 244 QNINDAHSNVIMGPQSITLYGEEEIEDQLSEVTFNISDQSFYQINSHQTEKLYQQALDYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTI + +A +HVYG EVVP AI+DA +NA N + N TFV
Sbjct: 304 QLT--GDEIVLDTYCGIGTIAIYMAENARHVYGVEVVPSAINDANQNATKNQLENTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + +PD+V+ DP R G ++ +L+L RIVY+SCNP+T RD
Sbjct: 362 GKAEEVILKWKAEGIRPDVVMVDPPRKGCDETFLETILELNPKRIVYISCNPSTQQRDAH 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L H Y LK + PVDMFP T HIE V L E
Sbjct: 422 ILNHQ---------YDLKEITPVDMFPQTTHIETVALFE 451
>gi|409101273|ref|ZP_11221297.1| TrmA family RNA methyltransferase [Pedobacter agri PB92]
Length = 470
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 132/220 (60%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T +E G+ +I E + G+ F+I SF+QTN+ QA LYK+ D AG
Sbjct: 261 INQKKNDTIFDQEVNVFAGRDHIFEEMDGIRFKIGVKSFYQTNSEQAFELYKITRDFAGF 320
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
+ G E+V DL+ G GTI +A+ VK V G E VP AI DA N++LN I N F GD
Sbjct: 321 K--GDELVYDLYTGAGTIANFVAKNVKQVVGVEYVPTAIEDAKFNSQLNGIDNTIFYAGD 378
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I +F A KPD+VI+DP R GMH +++ LL++++ +IVYVSCN AT ARDL+
Sbjct: 379 MKDILTAEFILAHGKPDVVITDPPRAGMHADVVQRLLEMESDKIVYVSCNAATQARDLEM 438
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y++ ++PVDMFPHT H+E V LL+
Sbjct: 439 LS---------AKYEVARIKPVDMFPHTQHVENVVLLKFK 469
>gi|418641314|ref|ZP_13203524.1| 23S rRNA (uracil-5-)-methyltransferase RumA-like protein
[Staphylococcus aureus subsp. aureus IS-24]
gi|375019114|gb|EHS12675.1| 23S rRNA (uracil-5-)-methyltransferase RumA-like protein
[Staphylococcus aureus subsp. aureus IS-24]
Length = 232
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 126/220 (57%), Gaps = 11/220 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 23 QNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYA 82
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV
Sbjct: 83 QLT--GNEVVLDTYCGIGTIGLYMAPLAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVC 140
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 141 GKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDAL 200
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 201 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNL 231
>gi|430748973|ref|YP_007211881.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermobacillus
composti KWC4]
gi|430732938|gb|AGA56883.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermobacillus
composti KWC4]
Length = 465
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+E L+G I + L G+ F ISA SF+Q N Q LY+ +
Sbjct: 254 VQNVNTRNTNVIFGDETRVLWGSDVIHDELDGIRFAISARSFYQVNPAQTVALYRKAVEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E V+D +CG GTI L LAR VYG E VP+A+ DA RNA LN I+NA+F
Sbjct: 314 AGL--TGRETVIDAYCGIGTISLFLARRAGKVYGVESVPEAVEDARRNAALNGIANASFE 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G +L+ +++++ R+VYVSCNPAT ARDL
Sbjct: 372 VGLAEEVIPRWREAGVAADVIVVDPPRKGCDAQLLDTIVRMRPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G ++ +QPVDMFPHT H+ECV LL
Sbjct: 432 AVLE--------AGGFRTVEVQPVDMFPHTGHVECVVLL 462
>gi|78189981|ref|YP_380319.1| 23S rRNA methyltransferase/RumA [Chlorobium chlorochromatii CaD3]
gi|78172180|gb|ABB29276.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium chlorochromatii
CaD3]
Length = 477
Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 133/222 (59%), Gaps = 20/222 (9%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NN+ + + GEEE + G+ ITE L GL F+ISANSFFQTN+ QAEVLY+ +
Sbjct: 264 VNNITSRKNGVATGEEEVVISGEGFITERLCGLDFRISANSFFQTNSAQAEVLYQTLLAV 323
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ ++ V DL+CGTGTI L +A V G EVV AI DA NA N I+NA F+
Sbjct: 324 ADLQP--TDTVYDLYCGTGTITLCMAAHCHQVIGLEVVESAIRDAQNNALRNGITNAHFL 381
Query: 121 QGDLNKIGGDFGNAFP------KPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPA 174
DL DF P KP ++++DP R GMH K + +++L+ RI+YVSCNPA
Sbjct: 382 LADLK----DFHTLLPLLEEHGKPRVIVTDPPRAGMHPKALATMVQLQPERIIYVSCNPA 437
Query: 175 TCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 216
+ ARD G + Y L+S+QPV+MFP T HIE V
Sbjct: 438 SLARD--------GKELAAQGYSLRSVQPVEMFPQTNHIESV 471
>gi|333977736|ref|YP_004515681.1| TrmA family RNA methyltransferase [Desulfotomaculum kuznetsovii DSM
6115]
gi|333821217|gb|AEG13880.1| RNA methyltransferase, TrmA family [Desulfotomaculum kuznetsovii
DSM 6115]
Length = 454
Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 136/226 (60%), Gaps = 19/226 (8%)
Query: 2 NNVNTSVGNTSV--GEEE-----YTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLY 54
V T V T+V G E TLYG+ IT+ L L F+ISA SF+Q N Q LY
Sbjct: 237 GRVTTVVQQTAVLPGREPDDGRTRTLYGRGYITDRLGDLVFRISAASFYQVNPVQTRALY 296
Query: 55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI 114
+ + + AGL G E V+D +CG GTI L LAR + V G EV P+A++DA +NA+LNN+
Sbjct: 297 EKVREYAGL--TGMENVVDAYCGVGTIALFLARQAREVLGVEVSPRAVADARQNARLNNL 354
Query: 115 SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPA 174
+N +FV+G + K+ + PD+++ DP R G H +++ L + PR+VYVSC+P
Sbjct: 355 NNVSFVRGAVEKLLPRLFDRGDGPDVLVLDPPRRGCHRSVLEALARYPVPRVVYVSCDPG 414
Query: 175 TCARDLDYLC-HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
T ARDL +L HG Y++ +QPVDMFP T H+EC CLL
Sbjct: 415 TLARDLGFLAGHG---------YRVVEVQPVDMFPQTYHVECCCLL 451
>gi|423343741|ref|ZP_17321454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
johnsonii CL02T12C29]
gi|409214763|gb|EKN07772.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
johnsonii CL02T12C29]
Length = 472
Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 133/221 (60%), Gaps = 12/221 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M +N +T ++ GK +I E + GL F++ SF+QTN+ QA LYK+ +
Sbjct: 259 MYVINGKCNDTITDQDVLVFRGKDHIIEEMEGLQFKVGPKSFYQTNSGQAYELYKVAREF 318
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G+E+V DL+ GTGTI ++R K V G E VP+AI DA N+ LN I N F
Sbjct: 319 AGL--TGNEMVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSALNKIENTLFY 376
Query: 121 QGDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD+ I DF N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARD
Sbjct: 377 AGDMKDILTQDFINQHGRPDVIITDPPRAGMHDDVINTILFAEPERIVYVSCNPATQARD 436
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L L ++K Y +K +QP+DMFPHT H+E V LLE
Sbjct: 437 LSLL-------SVK--YAVKKVQPIDMFPHTHHVENVVLLE 468
>gi|282917244|ref|ZP_06324999.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus D139]
gi|283771047|ref|ZP_06343938.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
aureus H19]
gi|282318871|gb|EFB49226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus D139]
gi|283459641|gb|EFC06732.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
aureus H19]
Length = 453
Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 126/221 (57%), Gaps = 11/221 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 244 QNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+EIVLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV
Sbjct: 304 QLT--GNEIVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 362 GKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDAL 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 422 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|387819135|ref|YP_005679482.1| TrmA family RNA methyltransferase [Clostridium botulinum H04402
065]
gi|322807179|emb|CBZ04753.1| RNA methyltransferase, TrmA family [Clostridium botulinum H04402
065]
Length = 453
Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 135/220 (61%), Gaps = 13/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N ++ + ++ LYG+ I E L GL F+I+ +FFQTN+ AE LY +++D
Sbjct: 243 LHTINDTLSDVVQVDKLEILYGRDYIIEELLGLKFKIAPEAFFQTNSKGAEKLYSIVKDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D S++V DL+CGTGTIG +A K V G E++ +A+ A NAKLN ++N F+
Sbjct: 303 LG--DASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFI 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ D KPDI+I DP RPG+H +++++K + I+YVSCNP T DL
Sbjct: 361 AGDVAKVIKDVKQ---KPDIIILDPPRPGVHPVALEYVVKFQPKEIIYVSCNPKTLVDDL 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YL I YKL+ ++ +DMFPHTPH ECV +E
Sbjct: 418 KYL--------IDNGYKLEKVKGMDMFPHTPHTECVTRIE 449
>gi|300764680|ref|ZP_07074671.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017]
gi|404281317|ref|YP_006682215.1| TrmA/RumA/YfjO family RNA methyltransferase [Listeria monocytogenes
SLCC2755]
gi|300514566|gb|EFK41622.1| SAM-dependent methyltransferase [Listeria monocytogenes FSL N1-017]
gi|404227952|emb|CBY49357.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
monocytogenes SLCC2755]
Length = 459
Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 128/219 (58%), Gaps = 11/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L GL F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMGLEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + N +PD VI DP R G LIK LL ++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVNEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+++ +QPVDMFP T HIECV LL
Sbjct: 425 ALLAKK---------YRIRYMQPVDMFPQTAHIECVGLL 454
>gi|184155945|ref|YP_001844285.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
gi|183227289|dbj|BAG27805.1| RNA methyltransferase [Lactobacillus fermentum IFO 3956]
Length = 458
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 129/220 (58%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N +G + + L+G+ I + L G+ F IS SF+Q N Q E LY+ +
Sbjct: 244 VQNVNDKRTNVILGTKNHLLWGEPTIHDNLLGIDFTISPLSFYQVNPQQTERLYQTAIEN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL DGS+ V+D +CG GTI L +A+ KHVYG E+VP AI+DA +NA N I NATFV
Sbjct: 304 AGL--DGSQTVIDAYCGIGTISLAVAKHAKHVYGVEIVPAAIADAKQNAANNGIENATFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD+VI DP R G+ +LI+ K+ +++YVSCNPAT RDL
Sbjct: 362 VGKAEEQFAKWQAEGLKPDVVIVDPPRKGLDAQLIEATGKMAPQKVIYVSCNPATLVRDL 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+G + K +QPVD FP T H+E V +LE
Sbjct: 422 QRFAE-------QGYHVTKPIQPVDQFPQTTHVESVTVLE 454
>gi|379705276|ref|YP_005203735.1| RNA methyltransferase [Streptococcus infantarius subsp. infantarius
CJ18]
gi|374681975|gb|AEZ62264.1| RNA methyltransferase [Streptococcus infantarius subsp. infantarius
CJ18]
Length = 453
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 132/222 (59%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+++ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNINAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 300 SDLNSDS--IVIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G Y+LK +QPVD+FP T H+ECV LL+ S
Sbjct: 418 K-LYQDLG-------YELKKVQPVDLFPQTHHVECVVLLQRS 451
>gi|82751550|ref|YP_417291.1| RNA methyltransferase [Staphylococcus aureus RF122]
gi|82657081|emb|CAI81518.1| RNA methyltransferase [Staphylococcus aureus RF122]
Length = 453
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 126/220 (57%), Gaps = 11/220 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 245 NINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQ 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV G
Sbjct: 305 LT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQKNATINQCNNTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 363 KAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALL 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 423 LAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|440747340|ref|ZP_20926599.1| RNA methyltransferase, TrmA family [Mariniradius saccharolyticus
AK6]
gi|436484260|gb|ELP40264.1| RNA methyltransferase, TrmA family [Mariniradius saccharolyticus
AK6]
Length = 468
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 127/220 (57%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N T +E T GK I E + GL F+I SF+QTN+ QA LYK+ + AGL
Sbjct: 259 INLKKNETFHDQEIVTYAGKDYIEEEMEGLKFRIGPKSFYQTNSLQAYELYKVAREYAGL 318
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI +A+ K V G E V AI DA N+ +NNI N F GD
Sbjct: 319 --TGEEVVYDLYTGTGTIANFVAKQAKEVIGIEYVEAAIEDAKLNSNINNIYNTRFYAGD 376
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I F + PKP +VI+DP R GMH ++K LL+L AP IVYVSCNPAT ARD+
Sbjct: 377 MKDILTPAFASKHPKPHVVITDPPRAGMHEDVVKMLLQLAAPVIVYVSCNPATQARDIAL 436
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V L L
Sbjct: 437 LAEK---------YQVEKIQPVDMFPQTYHVENVVRLRLK 467
>gi|116873184|ref|YP_849965.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742062|emb|CAK21186.1| RNA methyltransferase, TrmA family [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 453
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 129/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N+ N GE TL+GK I +T+ G+ F ISA SF+Q N Q E+LY D
Sbjct: 242 VQNINSHKTNVIFGERTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEILYAQALDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAALNELTNTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ ++ D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPNWYKNGITADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y+ K +QPVDMFP T HIE V +L L
Sbjct: 420 KILTD--------GGYEAKKVQPVDMFPMTTHIEAVTVLNLK 453
>gi|314934062|ref|ZP_07841425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus caprae
C87]
gi|313653173|gb|EFS16932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus caprae
C87]
Length = 455
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/218 (45%), Positives = 123/218 (56%), Gaps = 11/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N + N +G + TLYGK I + L +TF IS SF+Q N+ Q E LY+ D A
Sbjct: 245 NINDTHSNVIMGRQSVTLYGKDKIVDQLSEVTFNISDQSFYQINSAQTEKLYQQAIDYAQ 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EIVLD +CG GTIGL +A KHVYG EVVP AI DA NA N ++N TF G
Sbjct: 305 L--TGEEIVLDTYCGIGTIGLYMAPQAKHVYGVEVVPSAIKDAEENATKNQLNNTTFECG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ ++ +PD+V+ DP R G +K LLKL RIVY+SCNP+T RD
Sbjct: 363 KAEDVILEWKAQGIRPDVVMVDPPRKGCDETFVKTLLKLNPKRIVYISCNPSTQQRDAQL 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L + Y L + PVDMFP T HIE V L E
Sbjct: 423 LANN---------YHLVEITPVDMFPQTTHIETVALFE 451
>gi|153939426|ref|YP_001392140.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. Langeland]
gi|384463128|ref|YP_005675723.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. 230613]
gi|152935322|gb|ABS40820.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. Langeland]
gi|295320145|gb|ADG00523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. 230613]
Length = 453
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 135/220 (61%), Gaps = 13/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N ++ + ++ LYG+ I E L GL F+I+ +FFQTN+ AE LY +++D
Sbjct: 243 LHTINDTLSDVVQVDKLEILYGRDYIIEELLGLKFKIAPEAFFQTNSKGAEKLYSIVKDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D S++V DL+CGTGTIG +A K V G E++ +A+ A NAKLN ++N F+
Sbjct: 303 LG--DASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFI 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ D KPDI+I DP RPG+H +++++K + I+YVSCNP T DL
Sbjct: 361 AGDVAKVIKDVKQ---KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDL 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YL I YKL+ ++ +DMFPHTPH ECV +E
Sbjct: 418 KYL--------IDNGYKLEKVKGMDMFPHTPHTECVTRIE 449
>gi|377832238|ref|ZP_09815200.1| RNA methyltransferase [Lactobacillus mucosae LM1]
gi|377553874|gb|EHT15591.1| RNA methyltransferase [Lactobacillus mucosae LM1]
Length = 457
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 124/220 (56%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N +G E +TL+G I + L G+ F IS SF+Q N Q E LY+ +
Sbjct: 245 VQNVNTKRTNKLLGLENHTLWGSDTIHDQLLGIDFTISPLSFYQVNPQQTEKLYQTAIEA 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG++ V+D +CG GTI L +A+ K VYG E+VP AI DA +NAK+N I NA F
Sbjct: 305 AEL--DGTQTVIDAYCGIGTISLAVAKHAKKVYGVEIVPAAIEDAKQNAKVNQIENAEFA 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD++I DP R G+ LI K+ +I+YVSCN AT RDL
Sbjct: 363 VGKAEEQMAKWQKEGLKPDVLIVDPPRKGLDETLIDAAGKMAPAKIIYVSCNQATLVRDL 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G + K +QPVD FP TPHIE V LLE
Sbjct: 423 QRFAQA-------GYHVAKPIQPVDQFPQTPHIESVTLLE 455
>gi|403385957|ref|ZP_10928014.1| RNA methyltransferase [Kurthia sp. JC30]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 127/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + N G+E L+G I + + + F+ISA SF+Q N Q EVLYK D
Sbjct: 242 MQNVNPNNTNVIFGDETLNLWGADTIEDHIGDVRFEISARSFYQVNPIQTEVLYKQALDY 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ KHV G E+VPQAI DA RNA LN +N F
Sbjct: 302 AAL--TGEETVIDAYCGIGTISLFLAKNAKHVMGVEIVPQAIEDAKRNAALNGFNNTYFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + + D+++ DP R G L++ +L + RIVYVSCNPAT ARDL
Sbjct: 360 AGPAEEVIPRWFKEGKEADVLMVDPPRKGCDNALLETILSERPKRIVYVSCNPATLARDL 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G YK K +QPVDMFPHT H E V LEL+
Sbjct: 420 RVLE--------DGGYKTKEVQPVDMFPHTAHCEAVAWLELA 453
>gi|57652118|ref|YP_186782.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
gi|87160330|ref|YP_494530.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195795|ref|YP_500605.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|151222047|ref|YP_001332869.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus
subsp. aureus str. Newman]
gi|161510119|ref|YP_001575778.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221141187|ref|ZP_03565680.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|258451037|ref|ZP_05699073.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus
A5948]
gi|262049941|ref|ZP_06022801.1| hypothetical protein SAD30_1411 [Staphylococcus aureus D30]
gi|262053191|ref|ZP_06025349.1| hypothetical protein SA930_1196 [Staphylococcus aureus 930918-3]
gi|282923236|ref|ZP_06330917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A9765]
gi|284024943|ref|ZP_06379341.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
gi|294849446|ref|ZP_06790188.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A9754]
gi|304379083|ref|ZP_07361830.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|379015101|ref|YP_005291337.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus VC40]
gi|384862540|ref|YP_005745260.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|384870438|ref|YP_005753152.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus T0131]
gi|415689553|ref|ZP_11452838.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|417649137|ref|ZP_12298943.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21189]
gi|418286837|ref|ZP_12899475.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21209]
gi|418317586|ref|ZP_12929003.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21232]
gi|418570037|ref|ZP_13134336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21283]
gi|418579823|ref|ZP_13143914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418648502|ref|ZP_13210544.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-88]
gi|418651455|ref|ZP_13213456.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-91]
gi|418659988|ref|ZP_13221640.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-111]
gi|418871751|ref|ZP_13426120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-125]
gi|418904232|ref|ZP_13458271.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418906836|ref|ZP_13460859.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418912525|ref|ZP_13466503.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG547]
gi|418926312|ref|ZP_13480209.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418929245|ref|ZP_13483130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418949256|ref|ZP_13501513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-157]
gi|419774006|ref|ZP_14299990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CO-23]
gi|422744268|ref|ZP_16798235.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus MRSA177]
gi|422747069|ref|ZP_16800994.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus MRSA131]
gi|424785856|ref|ZP_18212652.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Staphylococcus aureus
CN79]
gi|440708423|ref|ZP_20889088.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21282]
gi|81694159|sp|Q5HEM5.1|Y1957_STAAC RecName: Full=Uncharacterized RNA methyltransferase SACOL1957
gi|57286304|gb|AAW38398.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
aureus COL]
gi|87126304|gb|ABD20818.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87203353|gb|ABD31163.1| RNA methyltransferase, TrmA family, putative [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|150374847|dbj|BAF68107.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus
subsp. aureus str. Newman]
gi|160368928|gb|ABX29899.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|257861279|gb|EEV84091.1| RNA methyltransferase TrmA family protein [Staphylococcus aureus
A5948]
gi|259158918|gb|EEW44004.1| hypothetical protein SA930_1196 [Staphylococcus aureus 930918-3]
gi|259161949|gb|EEW46531.1| hypothetical protein SAD30_1411 [Staphylococcus aureus D30]
gi|282593147|gb|EFB98146.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A9765]
gi|294823583|gb|EFG40010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A9754]
gi|302751769|gb|ADL65946.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|304342318|gb|EFM08210.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|315196232|gb|EFU26587.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|320139723|gb|EFW31592.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320142360|gb|EFW34174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus MRSA177]
gi|329314573|gb|AEB88986.1| Uncharacterized RNA methyltransferase [Staphylococcus aureus subsp.
aureus T0131]
gi|329728677|gb|EGG65107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21189]
gi|365165534|gb|EHM57320.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21209]
gi|365245136|gb|EHM85785.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21232]
gi|371985086|gb|EHP02174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21283]
gi|374363798|gb|AEZ37903.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus VC40]
gi|375025426|gb|EHS18830.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-91]
gi|375025945|gb|EHS19336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-88]
gi|375033573|gb|EHS26758.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-111]
gi|375367866|gb|EHS71804.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-125]
gi|375369497|gb|EHS73375.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-157]
gi|377693702|gb|EHT18071.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377721260|gb|EHT45398.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG547]
gi|377736930|gb|EHT60943.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377740312|gb|EHT64309.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377741464|gb|EHT65452.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377762304|gb|EHT86171.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|383972278|gb|EID88326.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CO-23]
gi|421955825|gb|EKU08159.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Staphylococcus aureus
CN79]
gi|436504946|gb|ELP40910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21282]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 126/221 (57%), Gaps = 11/221 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 244 QNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV
Sbjct: 304 QLT--GNEVVLDTYCGIGTIGLYMAPLAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 362 GKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDAL 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 422 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|281425818|ref|ZP_06256731.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris F0302]
gi|281400079|gb|EFB30910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris F0302]
Length = 479
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 130/219 (59%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + G+ E T + G I ET+ L F++ SF+QTNT QA LY + A
Sbjct: 270 VDNQKGNDTFGDLELTTFKGTDFIYETMEDLKFKVGPKSFYQTNTEQAYHLYSVARAFAA 329
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E+V DL+ GTGTI +A K V G E VP+AI DA N+K+N I N F G
Sbjct: 330 LT--GKELVYDLYTGTGTIANFVAHQAKQVIGIEYVPEAIEDAKENSKVNGIDNTLFYAG 387
Query: 123 DL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ N + DF + +PD++I+DP R GMH +++ +L R+VYVSCNPAT ARDL
Sbjct: 388 DMKNILTDDFIHEHGRPDVIITDPPRAGMHPDVVQVILNAAPKRVVYVSCNPATQARDL- 446
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + YK+ ++QPVDMFPHTPH+E V L E
Sbjct: 447 --------QLMDADYKVTAVQPVDMFPHTPHVENVVLQE 477
>gi|441471500|emb|CCQ21255.1| Uncharacterized RNA methyltransferase lmo1751 [Listeria
monocytogenes]
gi|441474632|emb|CCQ24386.1| Uncharacterized RNA methyltransferase lmo1751 [Listeria
monocytogenes N53-1]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPSWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILT--------DGGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453
>gi|223044024|ref|ZP_03614064.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
SK14]
gi|417906385|ref|ZP_12550175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
VCU116]
gi|222442567|gb|EEE48672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
SK14]
gi|341598041|gb|EGS40559.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
VCU116]
Length = 455
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 122/218 (55%), Gaps = 11/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N + N +G + TLYGK I + L +TF IS SF+Q N+ Q E LY+ D A
Sbjct: 245 NINDTHSNVIMGPQSVTLYGKDKIVDELSEVTFNISDQSFYQINSAQTEKLYQKAIDYAQ 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EIVLD +CG GTIGL +A KHVYG EVVP AI DA NA N ++N TF G
Sbjct: 305 LT--GEEIVLDTYCGIGTIGLYMAPQAKHVYGVEVVPSAIKDAQENATKNQLNNTTFECG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ ++ KPD+V+ DP R G IK LLKL RIVY+SCNP+T RD
Sbjct: 363 KAEDVILEWKAQGIKPDVVMVDPPRKGCDETFIKTLLKLNPKRIVYISCNPSTQQRDAQL 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Y L + PVDMFP T HIE V L E
Sbjct: 423 LSDN---------YHLVEITPVDMFPQTTHIETVALFE 451
>gi|422419368|ref|ZP_16496323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
N1-067]
gi|313632848|gb|EFR99799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
N1-067]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 131/222 (59%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ +
Sbjct: 242 VQNINPQKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIEA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LNN+SN TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLSNTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPTWYKAGIVADVLVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G + N+ +QPVDMFP T HIE V +L L
Sbjct: 420 KILSDGGYEANL--------VQPVDMFPMTTHIEAVTVLNLK 453
>gi|303235612|ref|ZP_07322219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella disiens
FB035-09AN]
gi|302484059|gb|EFL47047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella disiens
FB035-09AN]
Length = 474
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 131/221 (59%), Gaps = 13/221 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + + + T+Y G +I E + L F++ SF+QTNT QA LY + AG
Sbjct: 265 VDNQKGNDTFNDLDLTVYKGNDHIFELMEDLKFKVGPKSFYQTNTDQAYHLYSVARAFAG 324
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E+V DL+ GTGTI +A+ K V G E VP+AI DA N+++N I N F G
Sbjct: 325 LT--GKELVYDLYTGTGTIANFVAKQAKQVVGIEYVPEAIEDAKINSEINEIGNTLFYAG 382
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I DF +PD++I+DP R GMH +I +LK RIVYVSCNPAT ARDL
Sbjct: 383 DMKDILTDDFVKQHGRPDVIITDPPRAGMHNDVIDVILKAHPKRIVYVSCNPATQARDLA 442
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y++ ++QPVDMFPHTPH+E V LLE S
Sbjct: 443 LLSPD---------YRVVAVQPVDMFPHTPHVENVVLLEES 474
>gi|404413829|ref|YP_006699416.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC7179]
gi|404239528|emb|CBY60929.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC7179]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPSWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILT--------DGGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453
>gi|315282728|ref|ZP_07871069.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL
S4-120]
gi|313613628|gb|EFR87431.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria marthii FSL
S4-120]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 131/222 (59%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELTNTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPAWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K +QPVDMFP T HIE V +L+L+
Sbjct: 420 KILTD--------GGYVAKKVQPVDMFPMTTHIEAVTVLDLN 453
>gi|386054004|ref|YP_005971562.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
Finland 1998]
gi|346646655|gb|AEO39280.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
Finland 1998]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPSWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILT--------DGGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453
>gi|16803791|ref|NP_465276.1| hypothetical protein lmo1751 [Listeria monocytogenes EGD-e]
gi|47095677|ref|ZP_00233284.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str.
1/2a F6854]
gi|254913771|ref|ZP_05263783.1| RNA methyltransferase [Listeria monocytogenes J2818]
gi|254938158|ref|ZP_05269855.1| RNA methyltransferase [Listeria monocytogenes F6900]
gi|255028262|ref|ZP_05300213.1| hypothetical protein LmonL_01654 [Listeria monocytogenes LO28]
gi|386047403|ref|YP_005965735.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
J0161]
gi|386050728|ref|YP_005968719.1| RNA methyltransferase [Listeria monocytogenes FSL R2-561]
gi|404284247|ref|YP_006685144.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC2372]
gi|405758802|ref|YP_006688078.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC2479]
gi|50401632|sp|Q8Y6D6.1|Y1751_LISMO RecName: Full=Uncharacterized RNA methyltransferase lmo1751
gi|16411205|emb|CAC99829.1| lmo1751 [Listeria monocytogenes EGD-e]
gi|47015962|gb|EAL06888.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str.
1/2a F6854]
gi|258610771|gb|EEW23379.1| RNA methyltransferase [Listeria monocytogenes F6900]
gi|293591787|gb|EFG00122.1| RNA methyltransferase [Listeria monocytogenes J2818]
gi|345534394|gb|AEO03835.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
J0161]
gi|346424574|gb|AEO26099.1| RNA methyltransferase [Listeria monocytogenes FSL R2-561]
gi|404233749|emb|CBY55152.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC2372]
gi|404236684|emb|CBY58086.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC2479]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPSWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILT--------DGGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453
>gi|392530283|ref|ZP_10277420.1| putative RNA methyltransferase [Carnobacterium maltaromaticum ATCC
35586]
Length = 458
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 130/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN S N +G E L+G+ T+TL G TFQISA++F+Q N Q E LY+ + +
Sbjct: 247 IQNVNPSRTNKILGPENIVLWGQDYFTDTLLGNTFQISASAFYQVNPTQTEKLYQTVLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L+LA+ K VYG EVV A+ +A NAKLN I N TF
Sbjct: 307 AEL--TGKETVIDAYCGIGTISLSLAKEAKEVYGIEVVEAAVENAKNNAKLNGIENVTFE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ ++ D+++ DP R G+ I+ L +K +I+YVSCNPAT ARDL
Sbjct: 365 AGLAEEVMVEWAEKELAVDLLVVDPPRKGLEGSFIEAALTMKPNKIIYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G YK++ +QPVD+FP T H+E V LL
Sbjct: 425 ALLAD--------GGYKVEKVQPVDLFPQTSHVESVTLL 455
>gi|379796251|ref|YP_005326250.1| Uncharacterized RNA methyltransferase [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356873242|emb|CCE59581.1| Uncharacterized RNA methyltransferase [Staphylococcus aureus subsp.
aureus MSHR1132]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 125/221 (56%), Gaps = 11/221 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY D A
Sbjct: 244 QNINDSHSNVIMGRQSLTLYGKDTIIDQLSESTFKISDQSFYQINSEQTEKLYNKAIDYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV
Sbjct: 304 QLT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIKDAQQNATINQCNNTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + KPD+V+ DP R G I+ LL L+ RI+Y+SCNPAT RD
Sbjct: 362 GKAEDVILKWKAEGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIIYISCNPATQQRDAL 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 422 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|228913060|ref|ZP_04076699.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228846465|gb|EEM91478.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 459
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G YK + +QPVDMFPHT H+ECV LLEL
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVTLLELK 458
>gi|403669961|ref|ZP_10935137.1| RNA methyltransferase [Kurthia sp. JC8E]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 127/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN N G E L+G++ I + + + F+ISA SF+Q N Q EVLYK D
Sbjct: 242 MQNVNPDNTNVIFGNETVNLWGETTIEDHIGDVRFEISARSFYQVNPIQTEVLYKQALDY 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E V+D +CG GTI L LA+ KHV G E+VPQAI DA RNA LN +N F
Sbjct: 302 AAL--TGNETVIDAYCGIGTISLFLAKNAKHVMGVEIVPQAIEDAKRNATLNGFTNTYFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + + D+++ DP R G L++ +L + RIVYVSCNPAT ARDL
Sbjct: 360 AGPAEEVIPRWFKEGKEADVLMVDPPRKGCDNALLETILSERPKRIVYVSCNPATLARDL 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G YK K +QPVDMFPHT H E V LEL
Sbjct: 420 RVLE--------DGGYKTKEVQPVDMFPHTAHCEAVAWLEL 452
>gi|187776694|ref|ZP_02993167.1| hypothetical protein CLOSPO_00209 [Clostridium sporogenes ATCC
15579]
gi|187775353|gb|EDU39155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
ATCC 15579]
Length = 459
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 131/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +GE+ TL+GK IT+ + F IS SFFQ N Q E+LYK +
Sbjct: 248 IQNVNSKKTNVILGEKCITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEILYKKALEF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G EIV D +CGTGTI L L++ K VYG E++ +AI +A NAK N I NA F
Sbjct: 308 ADLK--GEEIVFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFF 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ D N K D+++ DP R G L++ + +K RIVYVSC+P T ARDL
Sbjct: 366 VGKSEEVIPDLINKGIKADVIVVDPPRKGCEKTLLEAIADIKPKRIVYVSCDPGTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G+G Y+ K +QPVDMFP T H+ECV L+
Sbjct: 426 GIL-NGLG-------YETKEVQPVDMFPQTSHVECVVLI 456
>gi|386044059|ref|YP_005962864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
10403S]
gi|404411052|ref|YP_006696640.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC5850]
gi|345537293|gb|AEO06733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
10403S]
gi|404230878|emb|CBY52282.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC5850]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPSWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILTD--------GGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453
>gi|416840640|ref|ZP_11903846.1| RNA methyltransferase [Staphylococcus aureus O11]
gi|416846099|ref|ZP_11906379.1| RNA methyltransferase [Staphylococcus aureus O46]
gi|323439838|gb|EGA97554.1| RNA methyltransferase [Staphylococcus aureus O11]
gi|323443001|gb|EGB00622.1| RNA methyltransferase [Staphylococcus aureus O46]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 126/220 (57%), Gaps = 11/220 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 245 NINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQ 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV G
Sbjct: 305 LT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 363 KAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALL 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 423 LAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|254829496|ref|ZP_05234183.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
gi|258601911|gb|EEW15236.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPSWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K +QPVDMFP T HIE V +L L+
Sbjct: 420 KLLT--------DGGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453
>gi|417903981|ref|ZP_12547812.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21269]
gi|341848310|gb|EGS89475.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21269]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 126/220 (57%), Gaps = 11/220 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 245 NINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQ 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV G
Sbjct: 305 LT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 363 KAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALL 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 423 LAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|384548187|ref|YP_005737440.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED133]
gi|387780960|ref|YP_005755758.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
LGA251]
gi|417897610|ref|ZP_12541540.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21235]
gi|418316744|ref|ZP_12928177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21340]
gi|418319980|ref|ZP_12931346.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus VCU006]
gi|418875830|ref|ZP_13430082.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIGC93]
gi|298695236|gb|ADI98458.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED133]
gi|341839517|gb|EGS81098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21235]
gi|344178062|emb|CCC88544.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
LGA251]
gi|365228711|gb|EHM69890.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus VCU006]
gi|365240454|gb|EHM81228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21340]
gi|377769121|gb|EHT92898.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIGC93]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 126/220 (57%), Gaps = 11/220 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 245 NINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQ 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV G
Sbjct: 305 LT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 363 KAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALL 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 423 LAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|21283567|ref|NP_646655.1| hypothetical protein MW1838 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486716|ref|YP_043937.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MSSA476]
gi|297208925|ref|ZP_06925329.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300913018|ref|ZP_07130456.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
subsp. aureus TCH70]
gi|379021657|ref|YP_005298319.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M013]
gi|385782161|ref|YP_005758332.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 11819-97]
gi|417654265|ref|ZP_12303989.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21193]
gi|417902451|ref|ZP_12546317.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21266]
gi|418572797|ref|ZP_13137001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21333]
gi|418600189|ref|ZP_13163658.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21343]
gi|418645976|ref|ZP_13208092.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-55]
gi|418934890|ref|ZP_13488708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIGC128]
gi|418950961|ref|ZP_13503093.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-160]
gi|418988984|ref|ZP_13536653.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1835]
gi|421150669|ref|ZP_15610324.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443639377|ref|ZP_21123388.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21196]
gi|448741045|ref|ZP_21723017.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
KT/314250]
gi|448744748|ref|ZP_21726631.1| 23S rRNA methyltransferase RumA [Staphylococcus aureus KT/Y21]
gi|50401765|sp|Q8NVT4.1|Y1838_STAAW RecName: Full=Uncharacterized RNA methyltransferase MW1838
gi|81649033|sp|Q6G836.1|Y1819_STAAS RecName: Full=Uncharacterized RNA methyltransferase SAS1819
gi|21205008|dbj|BAB95703.1| MW1838 [Staphylococcus aureus subsp. aureus MW2]
gi|49245159|emb|CAG43625.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296886415|gb|EFH25344.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300885796|gb|EFK81003.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
subsp. aureus TCH70]
gi|329731488|gb|EGG67851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21193]
gi|341843157|gb|EGS84388.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21266]
gi|359830966|gb|AEV78944.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
aureus M013]
gi|364523150|gb|AEW65900.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 11819-97]
gi|371983960|gb|EHP01092.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21333]
gi|374395101|gb|EHQ66375.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21343]
gi|375022045|gb|EHS15538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-55]
gi|375374970|gb|EHS78581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-160]
gi|377716118|gb|EHT40302.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377769372|gb|EHT93142.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIGC128]
gi|394329364|gb|EJE55473.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443407188|gb|ELS65748.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21196]
gi|445548153|gb|ELY16407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
KT/314250]
gi|445561948|gb|ELY18134.1| 23S rRNA methyltransferase RumA [Staphylococcus aureus KT/Y21]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 126/221 (57%), Gaps = 11/221 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 244 QNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV
Sbjct: 304 QLT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 362 GKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDAL 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 422 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|417797027|ref|ZP_12444227.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21305]
gi|334267616|gb|EGL86074.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21305]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 126/220 (57%), Gaps = 11/220 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 245 NINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQ 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV G
Sbjct: 305 LT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 363 KAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALL 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 423 LAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|258422974|ref|ZP_05685873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A9635]
gi|417890408|ref|ZP_12534483.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21200]
gi|418306651|ref|ZP_12918428.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21194]
gi|418889718|ref|ZP_13443847.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1524]
gi|257846761|gb|EEV70776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A9635]
gi|341854882|gb|EGS95742.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21200]
gi|365246445|gb|EHM86997.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21194]
gi|377751525|gb|EHT75454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1524]
Length = 453
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 126/221 (57%), Gaps = 11/221 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 244 QNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV
Sbjct: 304 QLT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 362 GKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDAL 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 422 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|418563740|ref|ZP_13128174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21262]
gi|371970355|gb|EHO87777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21262]
Length = 453
Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 126/221 (57%), Gaps = 11/221 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 244 QNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV
Sbjct: 304 QLT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 362 GKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDAL 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 422 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|386831486|ref|YP_006238140.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|417799238|ref|ZP_12446384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21310]
gi|418656844|ref|ZP_13218631.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-105]
gi|334274347|gb|EGL92668.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21310]
gi|375032119|gb|EHS25372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-105]
gi|385196878|emb|CCG16515.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
HO 5096 0412]
Length = 453
Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 126/221 (57%), Gaps = 11/221 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 244 QNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV
Sbjct: 304 QLT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 362 GKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDAL 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 422 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|312863381|ref|ZP_07723619.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
vestibularis F0396]
gi|311100917|gb|EFQ59122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
vestibularis F0396]
Length = 453
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 131/223 (58%), Gaps = 12/223 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+++ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 300 SDLNSDS--IVIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPDI+I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ADSAENAMAKWSKDGIKPDIIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 -DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
Y G Y+LK +QPVD+FP T H+ECV LL+ S
Sbjct: 418 KSYQELG---------YELKKVQPVDLFPQTHHVECVVLLQRS 451
>gi|385811543|ref|YP_005847939.1| SAM-dependent methyltransferase [Ignavibacterium album JCM 16511]
gi|383803591|gb|AFH50671.1| SAM-dependent methyltransferase [Ignavibacterium album JCM 16511]
Length = 483
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 133/221 (60%), Gaps = 12/221 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NN++ + +VG+ E +G I + + TF+ISANSFFQTNT QAE LY+ +
Sbjct: 271 VNNISKKLSAVAVGDYEKVFFGTGFIYDKIGEYTFRISANSFFQTNTRQAEKLYQTALEY 330
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G+E+V DL+ G GTI + +++ K V+ +E V A+ DA NA+LNNISN F+
Sbjct: 331 ADLK--GNEVVYDLYSGAGTIAIYISQKAKEVFAFESVQSAVEDAKVNAELNNISNVEFI 388
Query: 121 QGDLNK--IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR 178
DL K + FP P+++I DP R GMH ++ +++L RIVYVSCNPAT R
Sbjct: 389 TTDLYKSFLPIIHKKNFPVPEVMIIDPPRSGMHQNTVEDVIQLSPKRIVYVSCNPATQVR 448
Query: 179 DLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
D+ + YKL ++PVDMFP T HIE V LL
Sbjct: 449 DIKMF--------VDAGYKLLKIRPVDMFPQTYHIENVALL 481
>gi|300854061|ref|YP_003779045.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium
ljungdahlii DSM 13528]
gi|300434176|gb|ADK13943.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium
ljungdahlii DSM 13528]
Length = 450
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 131/219 (59%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ VN ++ + + LYG+ I E + GL F+IS SFFQTN+ E LY +I+D
Sbjct: 243 LHTVNDNLSDMVKADNVEILYGRDYIMEEILGLKFKISPESFFQTNSRGTEKLYAMIKDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D S+ V DL+CGTGTIG L+ V V G E++ +A++ A NAKLNNI N F+
Sbjct: 303 LG--DASSKTVFDLYCGTGTIGQVLSSSVNKVIGVELIEKAVASANENAKLNNIKNCRFI 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + KPDI+I DP RPG+H K +K+++ AP I+YVSCNP T +DL
Sbjct: 361 AGDVKDVLNTLED---KPDIIILDPPRPGVHPKALKYVIDFNAPEIIYVSCNPKTLVQDL 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ L I Y + ++ +DMFPHTPH+E V L
Sbjct: 418 NVL--------IDAGYNVDKVKLMDMFPHTPHVETVVKL 448
>gi|418561182|ref|ZP_13125679.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21252]
gi|418994608|ref|ZP_13542242.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG290]
gi|371969657|gb|EHO87097.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21252]
gi|377743221|gb|EHT67204.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG290]
Length = 453
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 126/221 (57%), Gaps = 11/221 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 244 QNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV
Sbjct: 304 QLT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 362 GKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDAL 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 422 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|254853619|ref|ZP_05242967.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|404287134|ref|YP_006693720.1| TrmA/RumA/YfjO family RNA methyltransferase [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|258606994|gb|EEW19602.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|404246063|emb|CBY04288.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
monocytogenes serotype 7 str. SLCC2482]
Length = 459
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 129/222 (58%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L GL F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMGLEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + N +PD VI DP R G LIK LL ++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVNEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LL+L
Sbjct: 425 ALLAKK---------YRIRYMQPVDMFPQTAHVETVVLLQLK 457
>gi|417849209|ref|ZP_12495134.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK1080]
gi|339456836|gb|EGP69418.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK1080]
Length = 451
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 134/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G +FQIS +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNSFQISGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +D ++V+D + G GTIGL++A+ VK +YG EV+P+A+ ++ +NA +N I+NA +V
Sbjct: 300 AELSED--DVVIDAYSGIGTIGLSVAKHVKEIYGVEVIPEAVENSQKNASINGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 CDTAENAMTKWSKNGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVALL 448
>gi|403381649|ref|ZP_10923706.1| TrmA family RNA methyltransferase, partial [Paenibacillus sp. JC66]
Length = 362
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 128/215 (59%), Gaps = 10/215 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N+ N G+E L+G+S I +T+ + F IS SF+Q N Q EVLY+ + A
Sbjct: 150 QNINSKRTNVIFGDEIKVLWGQSVIHDTIGDVKFAISPRSFYQVNPQQTEVLYRKALEYA 209
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G E V+D +CG GTI L LA+ K VYG E+VP+AI DA NA+LN I+N F
Sbjct: 210 QL--SGEETVIDAYCGIGTISLFLAQHAKKVYGVEIVPEAIEDARINAELNGITNVEFAV 267
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G I ++ N +P++++ DP R G L++ +L +K R+VYVSCNPAT ARDL
Sbjct: 268 GAAEHILPEWKNQGIRPEVIVVDPPRKGCDEALLETILVMKPERVVYVSCNPATLARDLR 327
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 216
L G Y+ +QPVDMFPHT H+ECV
Sbjct: 328 VLE--------DGGYRTMEVQPVDMFPHTVHVECV 354
>gi|167037107|ref|YP_001664685.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320115522|ref|YP_004185681.1| TrmA family RNA methyltransferase [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166855941|gb|ABY94349.1| RNA methyltransferase, TrmA family [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928613|gb|ADV79298.1| RNA methyltransferase, TrmA family [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 460
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 129/216 (59%), Gaps = 10/216 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+NT N +GEE T+YG NI + ++ + F+IS SFFQ N Q EVLY + A
Sbjct: 244 NINTKKTNVIMGEENITIYGSDNIIDYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYAD 303
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G E V+D++CG GTI L A+ VYG E V QA+ DA RNA +N I N F+ G
Sbjct: 304 LK--GEETVIDVYCGIGTISLFAAQKAAFVYGIEAVHQAVEDAKRNAYINGIKNVEFISG 361
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
D K+ + + K D+VI DP R G +++ ++K+ +IVYVSCNP+T ARDL Y
Sbjct: 362 DAEKVMPELVDKGVKADVVIMDPPRKGCDTSVLEAVIKMNPKKIVYVSCNPSTLARDLRY 421
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCL 218
L + N YK +QPVDMFP+T H+E V L
Sbjct: 422 L-----EDN---GYKTMEVQPVDMFPYTYHVESVAL 449
>gi|383812586|ref|ZP_09968021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
taxon 306 str. F0472]
gi|383354787|gb|EID32336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
taxon 306 str. F0472]
Length = 474
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 130/219 (59%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + + E TLY G +I ET+ L F++ SF+QTNT QA LY + + A
Sbjct: 265 VDNQKGNDTFNDLELTLYKGNDHIFETMEDLKFKVGPKSFYQTNTEQAYHLYSVAREFAN 324
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E+V DL+ GTGTI +A+ + V G E VP+AI DA N+ +NNI N F G
Sbjct: 325 LT--GDELVYDLYTGTGTIANFVAKKARKVIGIEYVPEAIEDAKVNSNVNNIDNTLFYAG 382
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I +F +PD++I+DP R GMH ++ +L RIVYVSCNPAT ARDL
Sbjct: 383 DMKDILTEEFIQKHGRPDVIITDPPRAGMHPDVVNVILGASPKRIVYVSCNPATQARDLA 442
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YK+ ++QPVDMFPHTPH+E V LLE
Sbjct: 443 LL---------DADYKVAAVQPVDMFPHTPHVENVVLLE 472
>gi|433654428|ref|YP_007298136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292617|gb|AGB18439.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 452
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 132/217 (60%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S +G + +YG IT+ + F+IS SFFQ N Q +VLY+ + A
Sbjct: 243 NINKSRSRLVMGSQNIVIYGDGYITDYIGDKKFEISPLSFFQVNPIQTKVLYEKALEYAD 302
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G EIV+D++CG GTI + A++VKHVYG EVV A+ DA RNA +NN+ NA F+ G
Sbjct: 303 LK--GDEIVIDVYCGIGTISIFFAKYVKHVYGIEVVSDAVEDAKRNAAINNVDNADFIAG 360
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ D N KP++++ DP R G+ +++ +K+ +I+YVSCNP T ARDL
Sbjct: 361 KAEDVMKDLCNKGLKPNVIVFDPPRKGLDKDVVETSIKMNPKKIIYVSCNPTTLARDLR- 419
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ + N YK + +QPVDMFP+T H+ECV L+
Sbjct: 420 ----IFEDN---GYKTEKVQPVDMFPYTYHVECVVLM 449
>gi|322372576|ref|ZP_08047112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
C150]
gi|321277618|gb|EFX54687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
C150]
Length = 451
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 130/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+++ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 300 SDLNSDS--IVIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVALL 448
>gi|302392787|ref|YP_003828607.1| RNA methyltransferase, TrmA family [Acetohalobium arabaticum DSM
5501]
gi|302204864|gb|ADL13542.1| RNA methyltransferase, TrmA family [Acetohalobium arabaticum DSM
5501]
Length = 456
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 130/216 (60%), Gaps = 10/216 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
NN+N N +G + Y+L G+S I + + + +QISA SFFQ NT QA+ LY I + A
Sbjct: 246 NNINRQKTNVILGAKTYSLAGESKIIDYIGSIRYQISAQSFFQVNTLQAKKLYDQILEYA 305
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G E V+D +CG G+I L LA+ K VYG EVV QAI DA NA+LNNI N F
Sbjct: 306 DL--SGEETVVDAYCGIGSISLYLAQAAKQVYGIEVVSQAIDDAKENAELNNIDNCYFKV 363
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + KI + P++++ DP R G H ++++ L+LK RI+YVSC P++ ARDL+
Sbjct: 364 GKVRKILPKLKSNGLNPEVIVVDPPRKGCHEEVLETFLELKPERIIYVSCKPSSLARDLE 423
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
L Y+++ +QPVDMFP T HIE V
Sbjct: 424 QLT--------AADYEVEEIQPVDMFPQTYHIEAVA 451
>gi|254826004|ref|ZP_05231005.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
gi|293595243|gb|EFG03004.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
Length = 453
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPAWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILT--------DGGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453
>gi|254853661|ref|ZP_05243009.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|300765947|ref|ZP_07075919.1| TrmA family RNA methyltransferase [Listeria monocytogenes FSL
N1-017]
gi|404281361|ref|YP_006682259.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC2755]
gi|404287179|ref|YP_006693765.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|258607040|gb|EEW19648.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|300513333|gb|EFK40408.1| TrmA family RNA methyltransferase [Listeria monocytogenes FSL
N1-017]
gi|404227996|emb|CBY49401.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC2755]
gi|404246108|emb|CBY04333.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes serotype 7 str. SLCC2482]
Length = 453
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPAWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILT--------DGGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453
>gi|399927088|ref|ZP_10784446.1| RNA methyltransferase [Myroides injenensis M09-0166]
Length = 470
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 132/216 (61%), Gaps = 13/216 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
N ++ +++ LY G+ I E + GL F I+A SF+QTN+ QA LYK+ + AGL G
Sbjct: 266 ANDTIYDQDVVLYKGRDYILEEMEGLKFSINAKSFYQTNSAQAYELYKITREYAGL--TG 323
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL-NK 126
+E+V DL+ GTGTI +++ K V G E VP+AI DA NA+ NNI+N F GD+ N
Sbjct: 324 NELVYDLYTGTGTIAQFVSKAAKKVIGVEAVPEAIEDAKINAERNNITNCDFFVGDMKNV 383
Query: 127 IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
DF +PD++I+DP R GMH ++ +LK+ R+VYVSCN AT ARDL +
Sbjct: 384 FNDDFIKTHGQPDVIITDPPRDGMHKDVVDMILKIAPKRVVYVSCNSATQARDLSLMDEK 443
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
YK+ ++PVDMFP T H+E V LLEL
Sbjct: 444 ---------YKVIKVRPVDMFPQTHHVENVVLLELK 470
>gi|254932803|ref|ZP_05266162.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
gi|405750101|ref|YP_006673567.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
ATCC 19117]
gi|405755910|ref|YP_006679374.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC2540]
gi|424823511|ref|ZP_18248524.1| hypothetical protein LMOSA_26720 [Listeria monocytogenes str. Scott
A]
gi|293584356|gb|EFF96388.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
gi|332312191|gb|EGJ25286.1| hypothetical protein LMOSA_26720 [Listeria monocytogenes str. Scott
A]
gi|404219301|emb|CBY70665.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes ATCC 19117]
gi|404225110|emb|CBY76472.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC2540]
Length = 453
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPIQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPAWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILT--------DGGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453
>gi|408492297|ref|YP_006868666.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychroflexus torquis
ATCC 700755]
gi|408469572|gb|AFU69916.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychroflexus torquis
ATCC 700755]
Length = 471
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 131/215 (60%), Gaps = 13/215 (6%)
Query: 9 GNTSVGEEEY-TLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
GN ++ ++E T YG+ +I E + GL F+I+A SF+QTN+ QA LYK+ A L G
Sbjct: 266 GNDTIYDQEICTYYGEDHIFEEMEGLKFKINAKSFYQTNSEQAYELYKITRSFANL--TG 323
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
E+V DL+ GTGTI +A+ KHV G E V +AI DA NAKLN I N +F GD+ K+
Sbjct: 324 EELVYDLYTGTGTIAQFVAKKAKHVVGIESVLEAIEDAKSNAKLNGIENTSFFAGDMKKL 383
Query: 128 -GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
+F +PD++I+DP R GMH +I+ +L +K RIVYVSCN AT ARDL+ +
Sbjct: 384 FNSEFIEKHGQPDVIITDPPRDGMHKDVIQQILNVKPKRIVYVSCNSATQARDLELMDE- 442
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
YK+ Q VDMFP T H+E V L L
Sbjct: 443 --------FYKVDESQAVDMFPQTHHVENVVCLSL 469
>gi|284802195|ref|YP_003414060.1| hypothetical protein LM5578_1951 [Listeria monocytogenes 08-5578]
gi|284995337|ref|YP_003417105.1| hypothetical protein LM5923_1902 [Listeria monocytogenes 08-5923]
gi|284057757|gb|ADB68698.1| hypothetical protein LM5578_1951 [Listeria monocytogenes 08-5578]
gi|284060804|gb|ADB71743.1| hypothetical protein LM5923_1902 [Listeria monocytogenes 08-5923]
Length = 453
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPAWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILT--------DGGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453
>gi|47092904|ref|ZP_00230686.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b
H7858]
gi|255521018|ref|ZP_05388255.1| hypothetical RNA methyltransferase [Listeria monocytogenes FSL
J1-175]
gi|47018730|gb|EAL09481.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b
H7858]
Length = 453
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPIQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPAWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILT--------DGGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453
>gi|189463386|ref|ZP_03012171.1| hypothetical protein BACCOP_04105 [Bacteroides coprocola DSM 17136]
gi|189429815|gb|EDU98799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides coprocola
DSM 17136]
Length = 489
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 132/220 (60%), Gaps = 16/220 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++G+ V G +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 283 NKCNDTIGDLDVE----VFKGNDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVARNFA 338
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI ++R + V G E VP+AI DA N+++N I N F
Sbjct: 339 GLT--GNELVYDLYTGTGTIANFVSRQARKVIGIEYVPEAIEDAKVNSQINGIENTLFYA 396
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 397 GDMKDILTQDFINEHGRPDVIITDPPRAGMHNDVIDVILFAEPKRIVYVSCNPATQARDL 456
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + YK+ ++QPVDMFPHT H+E V LLE
Sbjct: 457 ---------QLLDAKYKVMAVQPVDMFPHTHHVENVVLLE 487
>gi|46907981|ref|YP_014370.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
F2365]
gi|226224354|ref|YP_002758461.1| hypothetical RNA methyltransferase [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|254992256|ref|ZP_05274446.1| hypothetical RNA methyltransferase [Listeria monocytogenes FSL
J2-064]
gi|386732490|ref|YP_006205986.1| putative RNA methyltransferase [Listeria monocytogenes 07PF0776]
gi|405752976|ref|YP_006676441.1| TrmA/RumA/YefA-family RNA methyltransferase [Listeria monocytogenes
SLCC2378]
gi|406704533|ref|YP_006754887.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes L312]
gi|424714628|ref|YP_007015343.1| Uncharacterized RNA methyltransferase LMOf2365_1776 [Listeria
monocytogenes serotype 4b str. LL195]
gi|51316673|sp|Q71YR7.1|Y1776_LISMF RecName: Full=Uncharacterized RNA methyltransferase LMOf2365_1776
gi|46881251|gb|AAT04547.1| RNA methyltransferase, TrmA family [Listeria monocytogenes serotype
4b str. F2365]
gi|225876816|emb|CAS05525.1| Putative hypothetical RNA methyltransferase [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|384391248|gb|AFH80318.1| putative RNA methyltransferase [Listeria monocytogenes 07PF0776]
gi|404222176|emb|CBY73539.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes SLCC2378]
gi|406361563|emb|CBY67836.1| RNA methyltransferase, TrmA/RumA/YefA-family [Listeria
monocytogenes L312]
gi|424013812|emb|CCO64352.1| Uncharacterized RNA methyltransferase LMOf2365_1776 [Listeria
monocytogenes serotype 4b str. LL195]
Length = 453
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+GK I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRFAISARSFYQVNPIQTEVLYQQAIDA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPAWYKAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y K +QPVDMFP T HIE V +L L+
Sbjct: 420 KILT--------DGGYVAKKVQPVDMFPMTTHIEAVTVLHLN 453
>gi|198274964|ref|ZP_03207496.1| hypothetical protein BACPLE_01123 [Bacteroides plebeius DSM 17135]
gi|198272411|gb|EDY96680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides plebeius
DSM 17135]
Length = 472
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 130/220 (59%), Gaps = 16/220 (7%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N N ++G+ V G +I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 266 NKCNDTIGDLDVE----VFKGNDHIFEEMEGLRFKVGPKSFYQTNSEQAYNLYKVAREFA 321
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E+V DL+ GTGTI +AR + V G E VP+AI DA N+ LN I N F
Sbjct: 322 GL--TGNELVYDLYTGTGTIANFVARQARKVVGIEYVPEAIEDAKVNSALNGIDNTLFYA 379
Query: 122 GDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ I DF +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 380 GDMKDILTNDFIAEHGRPDVIITDPPRAGMHNDVIDVILAAEPKRIVYVSCNPATQARDL 439
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + G YK+ ++QPVDMFPHT H+E V LE
Sbjct: 440 ---------QLLDGKYKVTAVQPVDMFPHTHHVENVVQLE 470
>gi|317502954|ref|ZP_07961044.1| TrmA family RNA methyltransferase [Prevotella salivae DSM 15606]
gi|315665920|gb|EFV05497.1| TrmA family RNA methyltransferase [Prevotella salivae DSM 15606]
Length = 479
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 129/219 (58%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + G+ E T + G I ET+ L F++ SF+QTNT QA LY + A
Sbjct: 270 VDNQKGNDTFGDLELTTFKGTDFIYETMEDLKFKVGPKSFYQTNTDQAYHLYCVARSFAQ 329
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E+V DL+ GTGTI +A K V G E VP+AI DA N+ +N I+N F G
Sbjct: 330 LT--GGELVYDLYTGTGTIANFVAHQAKQVIGIEYVPEAIEDAKENSHVNGINNTLFYAG 387
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I DF +PD++I+DP R GMH ++K +L RIVYVSCNPAT ARDL
Sbjct: 388 DMKDILTDDFIQGHGQPDVIITDPPRAGMHADVVKVILNASPKRIVYVSCNPATQARDL- 446
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + YK+ ++QPVDMFPHTPH+E V LLE
Sbjct: 447 --------QLMDADYKVAAVQPVDMFPHTPHVENVVLLE 477
>gi|229194707|ref|ZP_04321500.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293]
gi|423607854|ref|ZP_17583747.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD102]
gi|228588810|gb|EEK46835.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1293]
gi|401239824|gb|EJR46235.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD102]
Length = 458
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|282880269|ref|ZP_06288985.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella timonensis
CRIS 5C-B1]
gi|281305864|gb|EFA97908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella timonensis
CRIS 5C-B1]
Length = 472
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 132/219 (60%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
VN N + ++ ++ GK +ITE + L F+++A SF+QTNT QA LY++ A
Sbjct: 263 VNNQKCNDTFSDQTIEVFKGKDHITEMMDKLQFKVAAKSFYQTNTQQAFHLYEVARQLAQ 322
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E+V DL+ GTGTI +AR + V G E V AI+DA N+K N I N F G
Sbjct: 323 L--TGKELVYDLYTGTGTIANFVARHAQQVIGIEYVEDAIADAKANSKCNGIENTLFYAG 380
Query: 123 DLNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I D F KPD++I+DP R GMH +I+ +L+ RIVYVSCNPAT ARDL+
Sbjct: 381 DMKDILTDEFVKQHGKPDVIITDPPRAGMHPDVIQTILRAAPKRIVYVSCNPATQARDLE 440
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Y+++ +QPVDMFPHTPH+E V LLE
Sbjct: 441 VLNEQ---------YRVEEVQPVDMFPHTPHVENVVLLE 470
>gi|206974173|ref|ZP_03235090.1| RNA methyltransferase, TrmA family [Bacillus cereus H3081.97]
gi|217957891|ref|YP_002336435.1| TrmA family RNA methyltransferase [Bacillus cereus AH187]
gi|222094090|ref|YP_002528147.1| RNA methyltransferase protein, trma family (tRNA
(uracil-5-)-methyltransferase) [Bacillus cereus Q1]
gi|375282425|ref|YP_005102862.1| TrmA family RNA methyltransferase [Bacillus cereus NC7401]
gi|423356817|ref|ZP_17334419.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus IS075]
gi|423375721|ref|ZP_17353057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
AND1407]
gi|423572063|ref|ZP_17548278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-A12]
gi|423577826|ref|ZP_17553945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-D12]
gi|206747413|gb|EDZ58803.1| RNA methyltransferase, TrmA family [Bacillus cereus H3081.97]
gi|217063544|gb|ACJ77794.1| RNA methyltransferase, TrmA family [Bacillus cereus AH187]
gi|221238145|gb|ACM10855.1| RNA methyltransferase protein, trmA family (tRNA
(uracil-5-)-methyltransferase) [Bacillus cereus Q1]
gi|358350950|dbj|BAL16122.1| RNA methyltransferase, TrmA family [Bacillus cereus NC7401]
gi|401076787|gb|EJP85137.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus IS075]
gi|401090965|gb|EJP99111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
AND1407]
gi|401198878|gb|EJR05790.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-A12]
gi|401204084|gb|EJR10905.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-D12]
Length = 458
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|253729672|ref|ZP_04863837.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|418313355|ref|ZP_12924846.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21334]
gi|253726613|gb|EES95342.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|365236164|gb|EHM77065.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21334]
Length = 453
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 125/221 (56%), Gaps = 11/221 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY A
Sbjct: 244 QNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIQYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV
Sbjct: 304 QLT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 362 GKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDAL 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 422 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|226950293|ref|YP_002805384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A2 str. Kyoto]
gi|226843642|gb|ACO86308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A2 str. Kyoto]
Length = 450
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 135/219 (61%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N ++ + ++ LYG+ I E L GL F+I+ +FFQTN+ AE LY +++D
Sbjct: 243 LHTINDTLSDVVQVDKLEILYGRDYIIEELLGLKFKIAPEAFFQTNSKGAEKLYSIVKDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D S++VLDL+CGTGTIG +A K V G E++ +A+ A NAKLN ++N F+
Sbjct: 303 LG--DASSKVVLDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFI 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ D KPDI+I DP RPG+H +++++K + I+YVSCNP T DL
Sbjct: 361 AGDVAKVIKDVKQ---KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDL 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
YL I YKL+ ++ +DMFPHTPH+E V L
Sbjct: 418 KYL--------IDNGYKLEKVKGMDMFPHTPHVETVVKL 448
>gi|423473333|ref|ZP_17450075.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6O-2]
gi|402426106|gb|EJV58244.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6O-2]
Length = 458
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|423456064|ref|ZP_17432917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5X1-1]
gi|401133320|gb|EJQ40952.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5X1-1]
Length = 458
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|398814110|ref|ZP_10572793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
BC25]
gi|398037054|gb|EJL30256.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus sp.
BC25]
Length = 477
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 129/219 (58%), Gaps = 11/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G++ TL+G I + + + F ISA SF+Q N Q EVLY +
Sbjct: 266 VQNINPDKTNVIFGKKTVTLWGSDVIYDYIGSIKFAISARSFYQVNPVQTEVLYNKTLEY 325
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AG G+E V+D +CG GTI L LA+ KHVYG E+VP+AI DA RNA+LN + NATF
Sbjct: 326 AGA--TGTETVIDAYCGIGTISLFLAQKSKHVYGVEIVPEAIEDANRNAQLNGVENATFE 383
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + + D+++ DP R G L+ +L+++ R+VYVSCNP+T ARDL
Sbjct: 384 AGPAEVVIPAWKEKGIRADVIVVDPPRKGCDEALLTTILEMQPERVVYVSCNPSTLARDL 443
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y++K +QPVDMFPHT H+E V LL
Sbjct: 444 KVLAER---------YEVKEVQPVDMFPHTGHVESVALL 473
>gi|445389011|ref|ZP_21428125.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus MTCC
5461]
gi|444750464|gb|ELW75271.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus MTCC
5461]
Length = 453
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 130/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+ + G ++ISA SF+Q NT AE LY++ D
Sbjct: 240 IQNINDKNTNAIFGKEFRTLYGQDTITDRMLGNDYEISAQSFYQVNTEMAEKLYQIAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 300 SDLNSDS--IVIDAYSGIGTIGLSFAKQVKKVYGVEVIETAVEDAKKNAERNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ANSAENAMAKWSQDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQDLG-------YELKKVQPVDLFPQTHHVECVGLL 448
>gi|445374528|ref|ZP_21426408.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus MTCC
5460]
gi|444750614|gb|ELW75415.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus MTCC
5460]
Length = 411
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 130/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+ + G ++ISA SF+Q NT AE LY++ D
Sbjct: 198 IQNINDKNTNAIFGKEFRTLYGQDTITDRMLGNDYEISAQSFYQVNTEMAEKLYQIAIDF 257
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 258 SDLNSDS--IVIDAYSGIGTIGLSFAKQVKKVYGVEVIETAVEDAKKNAERNGITNAHYV 315
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 316 ANSAENAMAKWSQDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 375
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 376 K-LYQDLG-------YELKKVQPVDLFPQTHHVECVGLL 406
>gi|224476953|ref|YP_002634559.1| putative RNA methyltransferase [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421560|emb|CAL28374.1| putative RNA methyltransferase [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 453
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 127/220 (57%), Gaps = 11/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N S N +G TL+GK I + L + F+IS SF+Q N+ Q LY +
Sbjct: 243 IQNINESHSNVIMGRHSKTLFGKDEIEDDLDSVEFKISDQSFYQINSEQTVKLYNKALEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G E VLD +CG GTIGL +A KHVYG EVVP AI DA +NA+LN+ +N TFV
Sbjct: 303 AQL--NGDETVLDTYCGIGTIGLYMAEKAKHVYGVEVVPAAIEDAKQNAELNSFNNTTFV 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + +PD+V+ DP R G + +K LL+L RIVY+SCNP+T RD
Sbjct: 361 CGKAEEVIMQWKADGIQPDVVMVDPPRKGCDEQFLKTLLELNPKRIVYISCNPSTQQRDA 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Y+LK + PVDMFP T HIE V L E
Sbjct: 421 GILTEQ---------YQLKEITPVDMFPQTTHIETVALFE 451
>gi|289578813|ref|YP_003477440.1| TrmA family RNA methyltransferase [Thermoanaerobacter italicus Ab9]
gi|289528526|gb|ADD02878.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus
Ab9]
Length = 453
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 133/217 (61%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+NT N +GE+ T+YG NI + ++ + F+IS SFFQ N Q EVLY + + A
Sbjct: 243 NINTKRTNVIMGEDNITIYGSDNIIDYIKDIKFEISPLSFFQVNPVQTEVLYGKVLEYAD 302
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G+E V+D++CG GTI L A+ VYG E V QA+ DA RNA +N I N F+ G
Sbjct: 303 LK--GNETVIDVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISG 360
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
K+ + + K D+VI DP R G + +++ ++ + +IVYVSCNP+T ARDL Y
Sbjct: 361 QAEKVMPELVDKGVKADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLARDLRY 420
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L + KG YK +QPVDMFP+T H+E VCL+
Sbjct: 421 L-------DDKG-YKTMEVQPVDMFPYTHHVESVCLI 449
>gi|229137158|ref|ZP_04265777.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26]
gi|228646330|gb|EEL02545.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST26]
Length = 459
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLSL 457
>gi|281420423|ref|ZP_06251422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella copri DSM
18205]
gi|281405568|gb|EFB36248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella copri DSM
18205]
Length = 483
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 131/219 (59%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN ++ + E +L+ G +I E + L F++ SF+QTNT QA LY + + A
Sbjct: 274 VDNQKGNDTINDLELSLFKGNDHIYELMEDLKFKVGPKSFYQTNTEQAYHLYCVAREFAN 333
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E+V DL+ GTGTI +A K V G E VP+AI DA N+++NNI N F G
Sbjct: 334 LT--GDELVYDLYTGTGTIANFVAHKAKKVIGIEYVPEAIEDAKVNSQVNNIENTLFYAG 391
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I DF +PD++I+DP R GMH +I +L RIVYVSCNPAT ARDL
Sbjct: 392 DMKDILTNDFIAQHGRPDVIITDPPRAGMHPDVINVILNAAPKRIVYVSCNPATQARDL- 450
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + YK+ ++QPVDMFPHTPH+E V LLE
Sbjct: 451 --------QLMDAEYKVAAVQPVDMFPHTPHVENVVLLE 481
>gi|352517636|ref|YP_004886953.1| putative RNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
gi|348601743|dbj|BAK94789.1| putative RNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
Length = 457
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 129/220 (58%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +GE+E L G+S + + L G T++ISA SF+Q NT QAEVLY+ +
Sbjct: 244 IQNINPKQTNVILGEQEKVLLGRSYVYDQLLGKTYRISAKSFYQVNTPQAEVLYQKAFEL 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ S++V+D + G GTIGL+LA V HVYG E + QA+ DA NAKLN I NA +V
Sbjct: 304 ADLKK--SDVVIDAYSGIGTIGLSLANQVAHVYGMETIKQAVIDAQENAKLNGIKNAEYV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G I + P+++ DP R G+ I+ ++K + +Y+SCNPAT ARDL
Sbjct: 362 TGKAEDIMPRWKEDGIHPNVIFVDPPRKGLDQSFIETACQMKPEKFIYISCNPATMARDL 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ Y S+QPVD+FP T H+E + LLE
Sbjct: 422 KVFA--------EQEYFTDSIQPVDLFPQTHHVETIVLLE 453
>gi|288554996|ref|YP_003426931.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
gi|288546156|gb|ADC50039.1| RNA methyltransferase, TrmA family [Bacillus pseudofirmus OF4]
Length = 459
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 130/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G++ L+G I +++ + F ISA SF+Q N Q +VLY +
Sbjct: 246 VQNINPKRTNVIFGDQTIVLWGDEYIYDSIGDIRFAISARSFYQVNPDQTKVLYDKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ KHVYG E+VP+AISDA +NA++N +N F
Sbjct: 306 ADLK--GDETVIDAYCGIGTISLFLAQKAKHVYGVEIVPEAISDAKKNAEINGFTNVDFA 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + +PD+++ DP R G KL++ +L +K R+VYVSCNPAT ARDL
Sbjct: 364 VGEAENVMPWWYAQGIRPDVIVVDPPRKGCDEKLLETILNMKPKRVVYVSCNPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G YK K +QPVDMFPH+ H+E V +
Sbjct: 424 RVLE--------DGGYKTKEVQPVDMFPHSTHVEVVSQI 454
>gi|15924887|ref|NP_372421.1| RNA methyltransferase-like protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|15927471|ref|NP_375004.1| hypothetical protein SA1713 [Staphylococcus aureus subsp. aureus
N315]
gi|148268369|ref|YP_001247312.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH9]
gi|150394431|ref|YP_001317106.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus JH1]
gi|156980213|ref|YP_001442472.1| RNA methyltransferase-like protein [Staphylococcus aureus subsp.
aureus Mu3]
gi|253734995|ref|ZP_04869160.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|255006684|ref|ZP_05145285.2| RNA methyltransferase-like protein [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257793749|ref|ZP_05642728.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A9781]
gi|258408891|ref|ZP_05681173.1| RNA methyltransferase [Staphylococcus aureus A9763]
gi|258421005|ref|ZP_05683936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A9719]
gi|258430023|ref|ZP_05688393.1| RNA methyltransferase [Staphylococcus aureus A9299]
gi|258443459|ref|ZP_05691801.1| RNA methyltransferase [Staphylococcus aureus A8115]
gi|258445317|ref|ZP_05693508.1| RNA methyltransferase [Staphylococcus aureus A6300]
gi|258447881|ref|ZP_05696015.1| RNA methyltransferase [Staphylococcus aureus A6224]
gi|258453314|ref|ZP_05701299.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A5937]
gi|269203550|ref|YP_003282819.1| rRNA methyltransferase RumA [Staphylococcus aureus subsp. aureus
ED98]
gi|282894564|ref|ZP_06302792.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A8117]
gi|282928070|ref|ZP_06335677.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A10102]
gi|295407277|ref|ZP_06817076.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A8819]
gi|296276906|ref|ZP_06859413.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1]
gi|297246197|ref|ZP_06930048.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A8796]
gi|384865102|ref|YP_005750461.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|387151038|ref|YP_005742602.1| RNA methyltransferase, TrmA family [Staphylococcus aureus 04-02981]
gi|415693408|ref|ZP_11455210.1| hypothetical protein CGSSa03_08530 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417652338|ref|ZP_12302086.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21172]
gi|417802347|ref|ZP_12449409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21318]
gi|417892697|ref|ZP_12536740.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21201]
gi|417897677|ref|ZP_12541605.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21259]
gi|418425086|ref|ZP_12998186.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus VRS1]
gi|418428038|ref|ZP_13001031.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus VRS2]
gi|418430908|ref|ZP_13003814.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus VRS3a]
gi|418434767|ref|ZP_13006622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus VRS4]
gi|418437521|ref|ZP_13009305.1| hypothetical protein MQI_01522 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418440430|ref|ZP_13012123.1| hypothetical protein MQK_01172 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418443428|ref|ZP_13015023.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus VRS7]
gi|418446499|ref|ZP_13017963.1| hypothetical protein MQO_01257 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418449520|ref|ZP_13020895.1| hypothetical protein MQQ_01767 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418452345|ref|ZP_13023674.1| hypothetical protein MQS_02621 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418455318|ref|ZP_13026571.1| hypothetical protein MQU_00708 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418458194|ref|ZP_13029387.1| hypothetical protein MQW_00850 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418568252|ref|ZP_13132601.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21272]
gi|418640168|ref|ZP_13202401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-3]
gi|418653311|ref|ZP_13215250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-99]
gi|418662782|ref|ZP_13224315.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-122]
gi|418878855|ref|ZP_13433087.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418881584|ref|ZP_13435799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418884559|ref|ZP_13438745.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418887260|ref|ZP_13441401.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418894683|ref|ZP_13448781.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418915027|ref|ZP_13468995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|418920151|ref|ZP_13474085.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418932217|ref|ZP_13486047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418991830|ref|ZP_13539489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1096]
gi|419784492|ref|ZP_14310259.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-M]
gi|424767718|ref|ZP_18195033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CM05]
gi|443635276|ref|ZP_21119407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21236]
gi|51316731|sp|Q7A4Q9.1|Y1713_STAAN RecName: Full=Uncharacterized RNA methyltransferase SA1713
gi|51316908|sp|Q99SY9.1|Y1897_STAAM RecName: Full=Uncharacterized RNA methyltransferase SAV1897
gi|13701690|dbj|BAB42983.1| SA1713 [Staphylococcus aureus subsp. aureus N315]
gi|14247669|dbj|BAB58059.1| RNA methyltransferase homolog [Staphylococcus aureus subsp. aureus
Mu50]
gi|147741438|gb|ABQ49736.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus JH9]
gi|149946883|gb|ABR52819.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
aureus JH1]
gi|156722348|dbj|BAF78765.1| RNA methyltransferase homolog [Staphylococcus aureus subsp. aureus
Mu3]
gi|253727177|gb|EES95906.1| TrmA family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|257787721|gb|EEV26061.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A9781]
gi|257840338|gb|EEV64800.1| RNA methyltransferase [Staphylococcus aureus A9763]
gi|257842953|gb|EEV67371.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A9719]
gi|257849617|gb|EEV73585.1| RNA methyltransferase [Staphylococcus aureus A9299]
gi|257851344|gb|EEV75284.1| RNA methyltransferase [Staphylococcus aureus A8115]
gi|257855835|gb|EEV78759.1| RNA methyltransferase [Staphylococcus aureus A6300]
gi|257858813|gb|EEV81682.1| RNA methyltransferase [Staphylococcus aureus A6224]
gi|257864522|gb|EEV87265.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A5937]
gi|262075840|gb|ACY11813.1| rRNA methyltransferase RumA [Staphylococcus aureus subsp. aureus
ED98]
gi|282590134|gb|EFB95215.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A10102]
gi|282763051|gb|EFC03183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A8117]
gi|285817577|gb|ADC38064.1| RNA methyltransferase, TrmA family [Staphylococcus aureus 04-02981]
gi|294967852|gb|EFG43882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A8819]
gi|297176904|gb|EFH36161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
A8796]
gi|312830269|emb|CBX35111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315129294|gb|EFT85288.1| hypothetical protein CGSSa03_08530 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329724825|gb|EGG61329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21172]
gi|334274831|gb|EGL93138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21318]
gi|341849752|gb|EGS90889.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21259]
gi|341857177|gb|EGS97999.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21201]
gi|371980017|gb|EHO97233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21272]
gi|375015111|gb|EHS08776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-3]
gi|375018973|gb|EHS12539.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-99]
gi|375035472|gb|EHS28594.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-122]
gi|377693133|gb|EHT17508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377696036|gb|EHT20393.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377711769|gb|EHT35996.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377712332|gb|EHT36550.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377721525|gb|EHT45656.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377722128|gb|EHT46255.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377730093|gb|EHT54167.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377755055|gb|EHT78959.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377766063|gb|EHT89901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIGC348]
gi|383364105|gb|EID41427.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-M]
gi|387716868|gb|EIK04906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus VRS2]
gi|387717369|gb|EIK05384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus VRS3a]
gi|387717641|gb|EIK05641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus VRS1]
gi|387724009|gb|EIK11695.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus VRS4]
gi|387726073|gb|EIK13657.1| hypothetical protein MQI_01522 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387729224|gb|EIK16680.1| hypothetical protein MQK_01172 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387733716|gb|EIK20889.1| hypothetical protein MQO_01257 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387735536|gb|EIK22656.1| hypothetical protein MQQ_01767 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387735639|gb|EIK22750.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus VRS7]
gi|387743460|gb|EIK30252.1| hypothetical protein MQS_02621 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387743499|gb|EIK30290.1| hypothetical protein MQU_00708 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387745168|gb|EIK31929.1| hypothetical protein MQW_00850 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|402348807|gb|EJU83781.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CM05]
gi|408423949|emb|CCJ11360.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
aureus ST228]
gi|408425938|emb|CCJ13325.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
aureus ST228]
gi|408427926|emb|CCJ15289.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
aureus ST228]
gi|408429915|emb|CCJ27080.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
aureus ST228]
gi|408431901|emb|CCJ19216.1| Uncharacterized RNA methyltransferase SAV1897 [Staphylococcus
aureus subsp. aureus ST228]
gi|408433896|emb|CCJ21181.1| Uncharacterized RNA methyltransferase SAV1897 [Staphylococcus
aureus subsp. aureus ST228]
gi|408435888|emb|CCJ23148.1| Uncharacterized RNA methyltransferase SAV1897 [Staphylococcus
aureus subsp. aureus ST228]
gi|408437871|emb|CCJ25114.1| Uncharacterized RNA methyltransferase SAV1897 [Staphylococcus
aureus subsp. aureus ST228]
gi|443409755|gb|ELS68246.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21236]
Length = 453
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 126/220 (57%), Gaps = 11/220 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 245 NINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQ 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+VLD +CG GTIGL +A KHVYG EVVP +I DA +NA +N +N TFV G
Sbjct: 305 LT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSSIEDAQQNATINQCNNTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 363 KAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALL 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 423 LAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|402494619|ref|ZP_10841359.1| RNA methyltransferase [Aquimarina agarilytica ZC1]
Length = 469
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 130/219 (59%), Gaps = 12/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VNT +T +E +GK I E + GL F+I+A SF+QTN+ QA LYK+ D AGL
Sbjct: 261 VNTKGNDTIYDQEVICFHGKDFIEEEMEGLRFKINAKSFYQTNSEQAFELYKITRDFAGL 320
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +++ KHV G E VP+AI+DA NA+ N I N F GD
Sbjct: 321 T--GNELVYDLYTGTGTIAQFVSKKAKHVIGVESVPEAIADAKINAEHNKIDNVEFYVGD 378
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K+ F + PD++I+DP R GMH ++ +L + +IVYVSCN AT ARDL
Sbjct: 379 MKKVFTAGFVDQHGMPDVIITDPPRDGMHKDVVAQILSIAPKKIVYVSCNSATQARDLAL 438
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+ Q VDMFP T H+E V LLEL
Sbjct: 439 LDE---------SYKVSKTQAVDMFPQTHHVENVVLLEL 468
>gi|418600772|ref|ZP_13164223.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21345]
gi|374400669|gb|EHQ71777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21345]
Length = 453
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 126/220 (57%), Gaps = 11/220 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 245 NINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQ 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV G
Sbjct: 305 LT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNP+T RD
Sbjct: 363 KAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPSTQQRDALL 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 423 LAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|418282440|ref|ZP_12895214.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21202]
gi|365170551|gb|EHM61549.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21202]
Length = 453
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 125/220 (56%), Gaps = 11/220 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 245 NINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQ 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+EIVLD +CG GTIGL +A KHVY EVVP AI DA +NA +N +N TFV G
Sbjct: 305 LT--GNEIVLDTYCGIGTIGLYMAPHAKHVYSVEVVPSAIEDAQKNATINQCNNTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 363 KAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALL 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 423 LAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|49484138|ref|YP_041362.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MRSA252]
gi|257426029|ref|ZP_05602451.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257428702|ref|ZP_05605097.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257431312|ref|ZP_05607688.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257436934|ref|ZP_05612976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus M876]
gi|282904528|ref|ZP_06312413.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus C160]
gi|282906301|ref|ZP_06314153.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282909217|ref|ZP_06317033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282911522|ref|ZP_06319322.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914695|ref|ZP_06322480.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
aureus M899]
gi|282919732|ref|ZP_06327464.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus C427]
gi|283958658|ref|ZP_06376104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293507772|ref|ZP_06667614.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 58-424]
gi|293510789|ref|ZP_06669491.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus M809]
gi|293539329|ref|ZP_06672008.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
aureus M1015]
gi|295428479|ref|ZP_06821106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297590050|ref|ZP_06948690.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
subsp. aureus MN8]
gi|384867132|ref|YP_005747328.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
subsp. aureus TCH60]
gi|415684803|ref|ZP_11449866.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
CGS00]
gi|417886976|ref|ZP_12531116.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21195]
gi|418565633|ref|ZP_13130030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21264]
gi|418581872|ref|ZP_13145952.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418596863|ref|ZP_13160407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21342]
gi|418892787|ref|ZP_13446896.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418898554|ref|ZP_13452622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418900447|ref|ZP_13454505.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418909824|ref|ZP_13463815.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG149]
gi|418917924|ref|ZP_13471880.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418923668|ref|ZP_13477581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418982963|ref|ZP_13530668.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418985614|ref|ZP_13533301.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1500]
gi|81650792|sp|Q6GFG0.1|Y1988_STAAR RecName: Full=Uncharacterized RNA methyltransferase SAR1988
gi|49242267|emb|CAG40974.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271172|gb|EEV03329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257274346|gb|EEV05858.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257277961|gb|EEV08617.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257283723|gb|EEV13848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus M876]
gi|282316370|gb|EFB46747.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus C427]
gi|282321409|gb|EFB51735.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
aureus M899]
gi|282324531|gb|EFB54843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282326785|gb|EFB57082.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282330498|gb|EFB60015.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595084|gb|EFC00051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus C160]
gi|283789698|gb|EFC28520.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus A017934/97]
gi|290919864|gb|EFD96933.1| RNA methyltransferase, TrmA family [Staphylococcus aureus subsp.
aureus M1015]
gi|291094835|gb|EFE25103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 58-424]
gi|291466420|gb|EFF08944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus M809]
gi|295127461|gb|EFG57100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297577178|gb|EFH95892.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
subsp. aureus MN8]
gi|312437637|gb|ADQ76708.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
subsp. aureus TCH60]
gi|315193426|gb|EFU23823.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
CGS00]
gi|341858608|gb|EGS99397.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21195]
gi|371972888|gb|EHO90256.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21264]
gi|374396445|gb|EHQ67682.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21342]
gi|377702815|gb|EHT27133.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377704174|gb|EHT28485.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377706294|gb|EHT30593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377711422|gb|EHT35655.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377729389|gb|EHT53484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377733262|gb|EHT57307.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377749231|gb|EHT73182.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377750770|gb|EHT74707.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIG149]
gi|377758674|gb|EHT82557.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus CIGC341D]
Length = 453
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 126/220 (57%), Gaps = 11/220 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 245 NINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQ 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV G
Sbjct: 305 LT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNP+T RD
Sbjct: 363 KAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPSTQQRDALL 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 423 LAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|392958467|ref|ZP_10323977.1| putative RNA methyltransferase [Bacillus macauensis ZFHKF-1]
gi|391875493|gb|EIT84103.1| putative RNA methyltransferase [Bacillus macauensis ZFHKF-1]
Length = 461
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 127/217 (58%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N+ N G+E L+G I + + + F ISA SF+Q N Q +VLY+
Sbjct: 247 VQNINSKKTNVIFGDETNVLWGNEYIYDNIGDIRFAISARSFYQINPDQTKVLYEKALQY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L GSE V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LNNI+NA F
Sbjct: 307 AKL--TGSETVIDAYCGIGTISLFLAQQAKQVYGVEIVPEAIEDARRNAELNNITNAQFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G I + PD+++ DP R G L++ ++++K R+VYVSCNPAT ARDL
Sbjct: 365 VGASEDILPQWKKQGITPDVIVVDPPRKGCDDALLQTIIEMKPQRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
L G +K +QPVDMFP T H+ECV
Sbjct: 425 RVLED--------GGFKTVEVQPVDMFPQTTHVECVA 453
>gi|55822623|ref|YP_141064.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus
CNRZ1066]
gi|55738608|gb|AAV62249.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
CNRZ1066]
Length = 453
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 130/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+++ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ V+ VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 300 SDLNSDS--IVIDAYSGIGTIGLSFAKQVREVYGVEVIETAVEDAKKNAERNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ADSAENAMAKWSQDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T HIECV LL
Sbjct: 418 K-LYQDLG-------YELKKVQPVDLFPQTHHIECVGLL 448
>gi|423681138|ref|ZP_17655977.1| RNA methyltransferase YefA [Bacillus licheniformis WX-02]
gi|383442244|gb|EID49953.1| RNA methyltransferase YefA [Bacillus licheniformis WX-02]
Length = 460
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E + G+ I +T+ G+ F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPKKTNVIFGDETTVILGEEYIYDTIGGIKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I NA F
Sbjct: 307 AEL--NGEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGIENAEFE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + ++ D ++ DP R G L++ +L++K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPEWYEEGIAADTLVVDPPRKGCDEALLRTILEMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y + +QPVDMFPHT H+ECV +L
Sbjct: 425 RVLED--------GGYVTREVQPVDMFPHTAHVECVAVL 455
>gi|445116577|ref|ZP_21378583.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella nigrescens
F0103]
gi|444840051|gb|ELX67093.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella nigrescens
F0103]
Length = 479
Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 134/219 (61%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + + E T++ G +I E + L F++ A SF+QTNT QA LY + A
Sbjct: 265 VDNQKGNDTFNDLELTVFKGNDHIFELMENLRFKVGAKSFYQTNTDQAYHLYSIARSFAN 324
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+V DL+ GTGTI +A+ K V G E VP+AI DA N+K+NNI N F G
Sbjct: 325 L--TGNELVYDLYTGTGTIANFVAKKAKKVIGIEYVPEAIEDAKINSKINNIVNTLFYAG 382
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I +F +P+I+I+DP R GMH ++ +L RIVYVSCNPAT ARDL
Sbjct: 383 DMKDILTEEFIKQHGRPEIIITDPPRAGMHADVVNVILSAHPQRIVYVSCNPATQARDLA 442
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L D++ YK+ ++QPVDMFPHTPH+E + LLE
Sbjct: 443 LL-----DKD----YKVTAVQPVDMFPHTPHVENIVLLE 472
>gi|424835274|ref|ZP_18259939.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
PA 3679]
gi|365978067|gb|EHN14162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
PA 3679]
Length = 459
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 130/220 (59%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +GE+ TL+GK IT+ + F IS SFFQ N Q EVLYK +
Sbjct: 248 IQNVNSKKTNVILGEKCITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G EIV D +CGTGTI L L++ K VYG E++ +AI +A NAK N I NA F
Sbjct: 308 ADLK--GEEIVFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFF 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G +I D + K D+V+ DP R G L++ + K RIVYVSC+P T ARDL
Sbjct: 366 VGKSEEIIPDLIDKGVKADVVVVDPPRKGCEKSLLEAIAATKPKRIVYVSCDPGTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G+G Y+ K +QPVDMFP T H+ECV +E
Sbjct: 426 GIL-NGLG-------YETKEVQPVDMFPQTSHVECVVKIE 457
>gi|357010169|ref|ZP_09075168.1| RNA methyltransferase [Paenibacillus elgii B69]
Length = 507
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 126/218 (57%), Gaps = 10/218 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
NVN N G+E L+G I +T+ + F ISA SF+Q N Q EVLY+ D A
Sbjct: 293 QNVNRQQTNVIFGDETRVLWGSEVIYDTIGDIRFAISARSFYQVNPVQTEVLYRKALDYA 352
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E V+D +CG GTI L LA+ + VYG E+VP+AI DA RNA +N+I N F
Sbjct: 353 GL--SGEETVIDAYCGIGTISLFLAQKAREVYGVEIVPEAIEDAKRNALVNDIRNVRFEV 410
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + ++ PD+++ DP R G L++ +L ++ R+VYVSCNP+T ARDL
Sbjct: 411 GGAEVVIPEWKRQGIAPDVIVVDPPRKGCDAALLETILSMRPERVVYVSCNPSTLARDLR 470
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y+ +QPVDMFPHT H+E V LL
Sbjct: 471 VLE--------DGGYRTVEVQPVDMFPHTVHVESVALL 500
>gi|187778559|ref|ZP_02995032.1| hypothetical protein CLOSPO_02154 [Clostridium sporogenes ATCC
15579]
gi|187772184|gb|EDU35986.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
ATCC 15579]
Length = 451
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 133/217 (61%), Gaps = 13/217 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N ++ + ++ LYG+ I E L GL F+I+ +FFQTN+ AE LY +++D
Sbjct: 243 LHTINDTLSDVVQVDKLEILYGRDYIIEELLGLKFKIAPEAFFQTNSKGAEKLYSIVKDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D S++V DL+CGTGTIG +A K V G E++ +A+ A NAKLN + N F+
Sbjct: 303 LG--DASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLDNCEFI 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ D KPDI+I DP RPG+H +++++K + I+YVSCNP T DL
Sbjct: 361 AGDVAKVIKDLKQ---KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDL 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+YL I YKL+ ++ +DMFPHTPH+E V
Sbjct: 418 EYL--------IDNGYKLEKVKGMDMFPHTPHVETVV 446
>gi|425738441|ref|ZP_18856704.1| RNA methyltransferase [Staphylococcus massiliensis S46]
gi|425479673|gb|EKU46846.1| RNA methyltransferase [Staphylococcus massiliensis S46]
Length = 455
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 126/220 (57%), Gaps = 11/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++N+NTS N +G++ +YG S I + L LTF+I SF+Q N Q E LY+ +
Sbjct: 243 IHNINTSHSNVIMGKKSQVMYGDSVIEDDLDNLTFEIGDRSFYQINVTQTEKLYRKAIEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G+EIV+D +CG GTIGL +A HVYG EVV AI DA N + N I N F
Sbjct: 303 AGLT--GNEIVIDAYCGIGTIGLYMAPHANHVYGVEVVESAIEDAKLNRERNGIQNIDFE 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G +I + KPD+V+ DP R G I LL+L+ RIVY+SCNP+T ARD
Sbjct: 361 AGKAEEIIIKWQQEGLKPDVVMVDPPRKGCDQTFINTLLELQPKRIVYISCNPSTQARDA 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ L Y L+ + PVDMFPHT HIE V L E
Sbjct: 421 ERLS---------DSYDLQEITPVDMFPHTTHIETVALFE 451
>gi|297583072|ref|YP_003698852.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10]
gi|297141529|gb|ADH98286.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens
MLS10]
Length = 441
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 129/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G++ L+G+ I + ++G+ F ISA SF+Q N Q EVLY+ +
Sbjct: 229 MQNINPKRTNVIFGDKTVCLWGEETIKDRIKGIEFVISAKSFYQVNPVQTEVLYEQALNY 288
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L GSE V+D +CG GTI L LA+ +HVYG E V AI DA RNAK N+I N TF
Sbjct: 289 AAL--TGSEKVIDAYCGIGTISLFLAQKARHVYGVESVAPAIDDAKRNAKANHIDNVTFA 346
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + + PD+++ DP R G ++ + +K RIVYVSCNPAT ARD+
Sbjct: 347 VGEAETLMPWWYSQGLDPDVIVVDPPRKGCETAMLDAMAAMKPERIVYVSCNPATLARDM 406
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
YL KG Y +K +QPVDMFP T H+E V ++
Sbjct: 407 KYLSE-------KG-YTVKEVQPVDMFPQTTHVEAVTVM 437
>gi|323703882|ref|ZP_08115516.1| RNA methyltransferase, TrmA family [Desulfotomaculum nigrificans
DSM 574]
gi|323531170|gb|EGB21075.1| RNA methyltransferase, TrmA family [Desulfotomaculum nigrificans
DSM 574]
Length = 462
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 133/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT+ G +G + L GK +IT+ L GL F+ISA SF+Q N Q EVLY +
Sbjct: 248 IRNINTNPGRLILGPQNQVLAGKDSITDRLCGLKFKISAASFYQVNPRQTEVLYNKALEF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI LAR V G E+VP A++DA NA+LNN+ N F
Sbjct: 308 ANLK--GDETVVDAYCGIGTIASLLARHAGSVIGLEIVPDAVTDARENARLNNLFNIEFF 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + ++ + +PD+V+ DP R G ++++ +LK + PR+VYVSC+PAT ARDL
Sbjct: 366 NGSVERLLPEMVARGLRPDLVVLDPPRKGCEKEVLEAILKTQVPRVVYVSCDPATLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L G G Y+ +QPVDMFP T H+ECV L+
Sbjct: 426 GILA-GAG-------YEPAEVQPVDMFPWTCHVECVVWLK 457
>gi|302345320|ref|YP_003813673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
melaninogenica ATCC 25845]
gi|302149971|gb|ADK96233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
melaninogenica ATCC 25845]
Length = 474
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 132/219 (60%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + + E TL+ G +I ET+ L F++ SF+QTNT QA LY + + A
Sbjct: 265 VDNQKGNDTFNDLELTLFKGNDHIFETMEDLRFKVGPKSFYQTNTEQAYHLYSVAREFAN 324
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+V DL+ GTGTI +A+ + V G E VP+AI DA N+++N I N F G
Sbjct: 325 LT--GNELVYDLYTGTGTIANFVAKKAQKVIGIEYVPEAIEDAKVNSEVNKIDNTLFYAG 382
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I DF + +PD++I+DP R GMH ++ +L RIVYVSCNPAT ARDL
Sbjct: 383 DMKDILTEDFISEHGRPDVIITDPPRAGMHPDVVNVILGASPKRIVYVSCNPATQARDLA 442
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YK+ ++QPVDMFPHTPH+E V LLE
Sbjct: 443 LL---------DADYKVSAVQPVDMFPHTPHVENVVLLE 472
>gi|404449886|ref|ZP_11014873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Indibacter
alkaliphilus LW1]
gi|403764365|gb|EJZ25266.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Indibacter
alkaliphilus LW1]
Length = 470
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 128/220 (58%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN T E T GK I E + GL F+I SF+QTN+ QA LYK+ + A L
Sbjct: 260 VNLKKNETFHDLEVVTYAGKPFIEEEMEGLKFRIGPKSFYQTNSEQAYELYKVTREFADL 319
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
+ G E+V DL+ GTGTI +A+ K V G E V AI DA NA++N I+NA F GD
Sbjct: 320 Q--GDEVVYDLYTGTGTIANFVAKQAKQVIGIEYVEAAIVDAKLNAEVNGINNALFYAGD 377
Query: 124 LNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + D F + KPD+VI+DP R GMH ++ LL+L+AP+IVYVSCNPAT ARD+
Sbjct: 378 MKDMLNDEFIASHSKPDVVITDPPRAGMHEDVVNMLLQLEAPKIVYVSCNPATQARDVAL 437
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y L +QPVDMFP T H+E V L L
Sbjct: 438 LSEK---------YSLDKIQPVDMFPQTYHVENVVRLTLK 468
>gi|229028174|ref|ZP_04184315.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271]
gi|228733122|gb|EEL83963.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1271]
Length = 465
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 314 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 464
>gi|168181545|ref|ZP_02616209.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
gi|237796317|ref|YP_002863869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
Ba4 str. 657]
gi|182674982|gb|EDT86943.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
gi|229260413|gb|ACQ51446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
Ba4 str. 657]
Length = 453
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 135/220 (61%), Gaps = 13/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N ++ + ++ LYG+ I E L GL F+I+ +FFQTN+ AE LY +++D
Sbjct: 243 LHTINDTLSDVVQVDKLEILYGRDYIIEELLGLKFKIAPEAFFQTNSKGAEKLYSIVKDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D S++V DL+CGTGTIG +A K V G E++ +A+ A NAKLN ++N F+
Sbjct: 303 LG--DASSKVVFDLYCGTGTIGQIVASKAKKVIGVELIEEAVKAANENAKLNGLNNCEFI 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ D KPDI+I DP RPG+H +++++K + I+YVSCNP T DL
Sbjct: 361 AGDVAKVIKDVKQ---KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDL 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YL I YKL+ ++ +DMFPHTPH+E LL+
Sbjct: 418 KYL--------IDNGYKLEKVKGMDMFPHTPHLETCVLLQ 449
>gi|170757395|ref|YP_001782496.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B1 str. Okra]
gi|169122607|gb|ACA46443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B1 str. Okra]
Length = 458
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 135/220 (61%), Gaps = 13/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N ++ + ++ LYG+ I E L GL F+I+ +FFQTN+ AE LY +++D
Sbjct: 248 LHTINDTLSDVVQVDKLEILYGRDYIIEELLGLKFKIAPEAFFQTNSKGAEKLYSIVKDF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D S++V DL+CGTGTIG +A K V G E++ +A+ A NAKLN ++N F+
Sbjct: 308 LG--DASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFI 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ D KPDI+I DP RPG+H +++++K + I+YVSCNP T DL
Sbjct: 366 AGDVAKVIKDVKQ---KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDL 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YL I YKL+ ++ +DMFPHTPH+E LL+
Sbjct: 423 KYL--------IDNGYKLEKVKGMDMFPHTPHVETCVLLQ 454
>gi|229015714|ref|ZP_04172696.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273]
gi|228745571|gb|EEL95591.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1273]
Length = 458
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AQL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|170761366|ref|YP_001788185.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A3 str. Loch Maree]
gi|169408355|gb|ACA56766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A3 str. Loch Maree]
Length = 450
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 134/219 (61%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N ++ + ++ LYG+ I E L GL F+I+ +FFQTN+ AE LY +++D
Sbjct: 243 LHTINDTLSDVVQVDKLEILYGRDYIIEELLGLKFKIAPEAFFQTNSKGAEKLYSIVKDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D S++V DL+CGTGTIG +A K V G E++ +A+ A NAKLN ++N F+
Sbjct: 303 LG--DASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFI 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ D KPDI+I DP RPG+H +++++K + I+YVSCNP T DL
Sbjct: 361 AGDVAKVIKDVKQ---KPDIIILDPPRPGVHPVALEYVVKFQPKEIIYVSCNPKTLVDDL 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
YL I YKL+ ++ +DMFPHTPH+E V L
Sbjct: 418 KYL--------IDNGYKLEKVKGMDMFPHTPHVETVVRL 448
>gi|357061666|ref|ZP_09122410.1| hypothetical protein HMPREF9332_01968 [Alloprevotella rava F0323]
gi|355373531|gb|EHG20848.1| hypothetical protein HMPREF9332_01968 [Alloprevotella rava F0323]
Length = 472
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 126/212 (59%), Gaps = 13/212 (6%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N ++G+ + +Y G I ET+ L F++ SF+QTNT QA LYK+ + AGL G
Sbjct: 269 NDTIGDLDIQIYAGHDYIYETMEDLRFKVGPKSFYQTNTEQAYELYKVARNFAGLT--GK 326
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI- 127
E+V DL+ GTGTI +A + V G E VP+AI DA NA LN + N F GD+ +
Sbjct: 327 ELVYDLYTGTGTIANFVAHQARQVIGIEYVPEAIEDAKVNAALNKLDNTLFFAGDMKDVL 386
Query: 128 GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 187
DF + +PD++I+DP R GMH ++ +L RIVYVSCNPAT ARDL
Sbjct: 387 NDDFIEQYGRPDVIITDPPRAGMHADVVNVILNAAPERIVYVSCNPATQARDL------- 439
Query: 188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Q + YKL +QPVDMFPHT H+E V LL
Sbjct: 440 --QLLDEKYKLVKVQPVDMFPHTQHVENVVLL 469
>gi|311747752|ref|ZP_07721537.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Algoriphagus sp. PR1]
gi|311302702|gb|EFQ79251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Algoriphagus sp. PR1]
Length = 468
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 134/221 (60%), Gaps = 14/221 (6%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
+NT GN + + E Y G I E + GL F+I SF+QTN+ QA LYK+ D A
Sbjct: 259 INTK-GNETFHDLELVTYAGLPYIEEEMEGLKFRIGPKSFYQTNSEQAYELYKITRDFAE 317
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G EIV DL+ GTGTI +A+ K V G E V AI+DA N+++N I N F G
Sbjct: 318 LK--GDEIVYDLYTGTGTIANFVAKKAKQVIGVEYVEAAIADAKINSQINGIENTLFYAG 375
Query: 123 DLNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ +I D F PD++I+DP R GM K+++ LLKL AP+IVYVSCNPAT ARDL
Sbjct: 376 DMKEILNDEFIENHAAPDVIITDPPRAGMDEKVVQMLLKLAAPKIVYVSCNPATQARDLA 435
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G++ Y ++ +QPVDMFP T H+E V LL L
Sbjct: 436 LL----GEK-----YDVQKVQPVDMFPQTYHVENVVLLTLK 467
>gi|229095036|ref|ZP_04226032.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29]
gi|229113989|ref|ZP_04243415.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3]
gi|423381650|ref|ZP_17358933.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1O-2]
gi|423444502|ref|ZP_17421407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4X2-1]
gi|423450329|ref|ZP_17427207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5O-1]
gi|423467765|ref|ZP_17444533.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6O-1]
gi|423537167|ref|ZP_17513585.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB2-9]
gi|423542892|ref|ZP_17519281.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB4-10]
gi|423543798|ref|ZP_17520156.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB5-5]
gi|423626475|ref|ZP_17602252.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD148]
gi|228669448|gb|EEL24864.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-3]
gi|228688366|gb|EEL42248.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-29]
gi|401126117|gb|EJQ33871.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5O-1]
gi|401167726|gb|EJQ75006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB4-10]
gi|401185927|gb|EJQ93016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB5-5]
gi|401252236|gb|EJR58498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD148]
gi|401629181|gb|EJS47007.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1O-2]
gi|402410780|gb|EJV43174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4X2-1]
gi|402412898|gb|EJV45250.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6O-1]
gi|402460134|gb|EJV91860.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB2-9]
Length = 458
Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|373125150|ref|ZP_09538987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 21_3]
gi|422329310|ref|ZP_16410336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 6_1_45]
gi|371657197|gb|EHO22503.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 6_1_45]
gi|371657900|gb|EHO23188.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 21_3]
Length = 443
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 128/217 (58%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N N +G++E L+G+ IT+++ L F IS+ SF+Q N Q E+LY + A
Sbjct: 233 NLNVRDDNVILGDKEQLLFGERAITDSIHDLKFSISSKSFYQVNPRQTEILYGKALEFAQ 292
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E VLDL+CG GTI + LA+ KHV G E+VPQAI DA +NA LN I+N FV
Sbjct: 293 L--TGKETVLDLYCGVGTISMFLAQRAKHVTGIEIVPQAIRDARKNAALNGIANIEFVCS 350
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
D PD+++ DP R G + I ++ ++ RIVYVSC+P T ARDL
Sbjct: 351 DAADYAKKLCEQGAHPDVIVVDPPRKGCDAQTIDSMVMMQPKRIVYVSCDPGTLARDLKL 410
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L KG Y+ + +QP+DMFP T H+ECVCLL
Sbjct: 411 L-------EEKG-YRTEIVQPLDMFPFTHHVECVCLL 439
>gi|387143485|ref|YP_005731878.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
TW20]
gi|418278509|ref|ZP_12892390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21178]
gi|418955333|ref|ZP_13507275.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-189]
gi|269941368|emb|CBI49765.1| putative RNA methyltransferase [Staphylococcus aureus subsp. aureus
TW20]
gi|365171914|gb|EHM62662.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus 21178]
gi|375371187|gb|EHS74974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-189]
Length = 453
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 126/221 (57%), Gaps = 11/221 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 244 QNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N ++ TFV
Sbjct: 304 QLT--GNEVVLDTYCGIGTIGLYMAPLAKHVYGVEVVPSAIEDAQQNATINQCNHTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + KPD+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 362 GKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDAL 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 422 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|383328968|ref|YP_005354852.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium
Aus0004]
gi|378938662|gb|AFC63734.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium
Aus0004]
Length = 458
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ Y +K +QPVD+FP T H+ECV L+
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHVECVVLM 453
>gi|339449293|ref|ZP_08652849.1| RNA methyltransferase, TrmA family protein [Lactobacillus
fructivorans KCTC 3543]
Length = 458
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 99/221 (44%), Positives = 132/221 (59%), Gaps = 11/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN S GN +G++ L GK+ I + L F IS SF+Q N Q E LY L D
Sbjct: 245 IQNVNDSHGNRLMGDKNVLLAGKAYIEDELLDTKFLISPMSFYQVNPIQTEKLYSLAIDK 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D ++V+D +CG GTI L +A VKHVYG +VV +AI DA +NAKLN I NATFV
Sbjct: 305 AQLSKD--DVVVDAYCGIGTISLAMAPKVKHVYGVDVVSEAIEDARKNAKLNQIDNATFV 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ + +P++V+ DP R G+ I+ +L++K R+VYVSCNPAT RD
Sbjct: 363 IAKAEDQMKKWADEGIRPNVVVVDPPRKGIDPTFIESVLEMKPERLVYVSCNPATLVRD- 421
Query: 181 DYLCHGVGDQNIKGCYKLKS-LQPVDMFPHTPHIECVCLLE 220
C + I G Y++K +QPVD FP TPH+E V +LE
Sbjct: 422 ---CQAL----IDGGYEIKQPVQPVDQFPQTPHVESVTVLE 455
>gi|418018183|ref|ZP_12657739.1| RNA methyltransferase yljE [Streptococcus salivarius M18]
gi|345527032|gb|EGX30343.1| RNA methyltransferase yljE [Streptococcus salivarius M18]
Length = 452
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 129/220 (58%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+++ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 300 SDLNSDS--IVIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPDI+I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ADSAENAMAKWSKDGIKPDIIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 -DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Y G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 KSYQELG---------YELKKVQPVDLFPQTHHVECVSLL 448
>gi|226310296|ref|YP_002770190.1| 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus brevis NBRC
100599]
gi|226093244|dbj|BAH41686.1| probable 23S rRNA (uracil-5-)-methyltransferase [Brevibacillus
brevis NBRC 100599]
Length = 485
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 130/219 (59%), Gaps = 11/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G++ TL+G I + + + F ISA SF+Q N Q EVLY +
Sbjct: 266 VQNINPDKTNVIFGKKTVTLWGSDVIYDYIGPIKFAISARSFYQVNPAQTEVLYNKTLEY 325
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AG G+E V+D +CG GTI L LA+ KHVYG E+VP+AI+DA RNA+LN + NATF
Sbjct: 326 AGA--TGTETVIDAYCGIGTISLFLAQKSKHVYGVEIVPEAIADANRNAQLNGVENATFE 383
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + + D+++ DP R G L+ +L+++ R+VYVSCNP+T ARDL
Sbjct: 384 AGPAEVVIPAWKEKGIRADVIVVDPPRKGCDEALLTTILEMQPERVVYVSCNPSTLARDL 443
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y++K +QPVDMFPHT H+E V +L
Sbjct: 444 KVLAER---------YEVKEVQPVDMFPHTGHVESVAVL 473
>gi|423393229|ref|ZP_17370455.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1X1-3]
gi|401631751|gb|EJS49543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1X1-3]
Length = 458
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AQL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|150024827|ref|YP_001295653.1| RNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
gi|149771368|emb|CAL42837.1| Probable RNA methyltransferase [Flavobacterium psychrophilum
JIP02/86]
Length = 471
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 132/213 (61%), Gaps = 13/213 (6%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N ++ +++ L+ G+ I E + GL F I+A SF+QTN+ QA LYK+ D AGL G+
Sbjct: 267 NDTIYDQDIKLFKGRDYILEEMEGLHFSINAKSFYQTNSEQAYELYKITRDFAGL--TGN 324
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
E+V DL+ GTGTI +++ K V G E VP+AI+DA NAK NNISN F GD+ +
Sbjct: 325 ELVYDLYTGTGTIAQFVSKQAKKVIGVEAVPEAIADAKENAKRNNISNCEFFVGDMKNVF 384
Query: 129 GD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 187
D F PD++I+DP R GMH ++K +L + A ++VYVSCN AT ARDL +
Sbjct: 385 NDAFIAQHGHPDVIITDPPRDGMHADVVKQILSIGAEKVVYVSCNSATQARDLALMDE-- 442
Query: 188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Y++ ++PVDMFP T H+E V LLE
Sbjct: 443 -------MYQVTRVRPVDMFPQTHHVENVVLLE 468
>gi|229021911|ref|ZP_04178475.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272]
gi|228739383|gb|EEL89815.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH1272]
Length = 465
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 314 AQL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 464
>gi|423409631|ref|ZP_17386780.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-3]
gi|401654643|gb|EJS72183.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-3]
Length = 458
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|357236080|ref|ZP_09123423.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus criceti
HS-6]
gi|356884062|gb|EHI74262.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus criceti
HS-6]
Length = 452
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 132/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G E TLYGK I +++ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKATNVVLGSEFRTLYGKDTIIDSMLGNQYEISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L + ++V+D + G GTIGL++A+ VK VYG EV+ A+ DA +NA LN I+NA ++
Sbjct: 300 SELSKE--DVVIDAYSGIGTIGLSVAKQVKAVYGVEVIKAAVKDAEKNAALNGIANAHYI 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ +I YVSCN AT ARD+
Sbjct: 358 ADSAEKAMAKWSKQGIKPDVILVDPPRKGLTESFIKASSAMQPRKITYVSCNSATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G YKLK +QPVD+FP+T HIECV LLE
Sbjct: 418 K-LYEELG-------YKLKKVQPVDLFPNTHHIECVALLE 449
>gi|363580950|ref|ZP_09313760.1| RNA methyltransferase [Flavobacteriaceae bacterium HQM9]
Length = 469
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 131/219 (59%), Gaps = 12/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+NT +T +E G++ I E + GL F+I+A SF+QTN+ QA LYK+ + AGL
Sbjct: 261 INTKGNDTIYDQEVICFSGQTYIEEEMEGLRFKINAKSFYQTNSEQAYELYKITRNFAGL 320
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +++ KHV G E VP+AI+DA NA NNI+NA F GD
Sbjct: 321 --TGNELVYDLYTGTGTIAQFVSKKAKHVIGVESVPEAIADAKTNANHNNITNAEFFVGD 378
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K+ F PD++I+DP R GMH +I +L + +IVYVSCN AT ARDL
Sbjct: 379 MKKVFTAGFVAQHGIPDVIITDPPRDGMHKDVISQILSIAPKKIVYVSCNSATQARDLAL 438
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+ Q VDMFP T H+E V LLEL
Sbjct: 439 LNER---------YKVSKTQAVDMFPQTHHVENVVLLEL 468
>gi|423398726|ref|ZP_17375927.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-1]
gi|401646671|gb|EJS64291.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-1]
Length = 458
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|288928551|ref|ZP_06422398.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
taxon 317 str. F0108]
gi|288331385|gb|EFC69969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
taxon 317 str. F0108]
Length = 479
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/204 (47%), Positives = 126/204 (61%), Gaps = 12/204 (5%)
Query: 18 YTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCG 77
Y G +I E + L F++ SF+QTNT QA LY++ A L G+EIV DL+ G
Sbjct: 284 YVFKGNDHIFEVMEDLRFKVGPKSFYQTNTQQAYHLYEVARRFANL--SGTEIVYDLYTG 341
Query: 78 TGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI-GGDFGNAFP 136
TGTI +AR K V G E VP+AI+DA N++LN I N TF GD+ I DF
Sbjct: 342 TGTIANFVARQAKKVVGVEYVPEAIADAKVNSELNGIGNTTFYAGDMKDILNDDFIANNG 401
Query: 137 KPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCY 196
+PD++I+DP R GMH +I+ +++ RIVYVSCNPAT ARDL L D+ Y
Sbjct: 402 QPDVIITDPPRAGMHADVIETIIRANPQRIVYVSCNPATQARDLIAL-----DER----Y 452
Query: 197 KLKSLQPVDMFPHTPHIECVCLLE 220
+ ++QPVDMFPHTPH+E V LLE
Sbjct: 453 AVTAVQPVDMFPHTPHVENVVLLE 476
>gi|387133433|ref|YP_006299405.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella intermedia
17]
gi|386376281|gb|AFJ08729.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella intermedia
17]
Length = 476
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 137/220 (62%), Gaps = 13/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + + E T++ G +I E + L F++ A SF+QTNT QA LY + + A
Sbjct: 265 VDNQKGNDTFNDLELTVFKGNDHIFELMEDLRFKVGAKSFYQTNTDQAYHLYSVARNFAN 324
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+V DL+ GTGTI +A+ K V G E VP+AI DA N+++NNI+N F G
Sbjct: 325 LT--GNELVYDLYTGTGTIANFVAKKAKKVIGIEYVPEAIEDAKINSEINNIANTLFYAG 382
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I +F +PD++I+DP R GMH ++ +L RIVYVSCNPAT ARDL
Sbjct: 383 DMKDILTEEFVKQHGRPDVIITDPPRAGMHADVVNVILGAHPQRIVYVSCNPATQARDLA 442
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L D++ Y++ ++QPVDMFPHTPH+E V LLE+
Sbjct: 443 LL-----DKD----YRVVAVQPVDMFPHTPHVENVVLLEV 473
>gi|365839063|ref|ZP_09380312.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaeroglobus geminatus
F0357]
gi|364565631|gb|EHM43348.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaeroglobus geminatus
F0357]
Length = 497
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+NT N +G + +YG I++++ L F+ISA SFFQ N+ QA+ LY+
Sbjct: 247 MQNINTRHTNVILGNKTKVIYGSLTISDSIGDLNFRISAQSFFQVNSEQAQKLYETALSY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D++CGTGTI L LA+ ++VYG E+V A+ DA +NAK N I NA F
Sbjct: 307 ANL--TGKETVVDVYCGTGTITLFLAKQARYVYGIEIVEPAVRDAVKNAKDNGIRNAHFT 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD + + KPD+++ DP R G K++ + +K R+VYVSCNPAT ARDL
Sbjct: 365 CGDAAYKLPELLQSGIKPDVIVIDPPRAGCEEKVLNAIASVKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Y+ +G YK + ++PVDMFP T H+E V LL
Sbjct: 425 AYM-------RTRG-YKTEKIRPVDMFPQTHHVEAVALL 455
>gi|365156601|ref|ZP_09352906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus smithii
7_3_47FAA]
gi|363627141|gb|EHL78081.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus smithii
7_3_47FAA]
Length = 462
Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 132/221 (59%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +GEE L+G+ I +++ + F ISA SF+Q N Q +VLY +
Sbjct: 249 IQNVNSKRTNVILGEETIVLWGRDVIYDSIGDVQFAISAKSFYQVNPEQTKVLYDKALEY 308
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA +NA+LN I+NA F
Sbjct: 309 AELK--GDETVIDAYCGIGTISLFLAKKAKKVYGVEIVPEAIEDAKKNAELNGITNAEFA 366
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ ++ K D+++ DP R G L++ +L++K ++VYVSCNPAT ARDL
Sbjct: 367 AGKAEEVIPEWYQRGVKADVLVVDPPRKGCDPALLETILQMKPKKVVYVSCNPATLARDL 426
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G YK +QPVDMFP T H+E V + L
Sbjct: 427 RILED--------GGYKTTKVQPVDMFPQTGHVEAVAQIVL 459
>gi|397904320|ref|ZP_10505238.1| RNA methyltransferase, TrmA family [Caloramator australicus RC3]
gi|343179067|emb|CCC58137.1| RNA methyltransferase, TrmA family [Caloramator australicus RC3]
Length = 447
Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 134/221 (60%), Gaps = 15/221 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N S+ + ++ LYG I E + GL F+I+A SFFQTN+ AE LY ++ D
Sbjct: 240 LHTINDSISDVVQSDKTEILYGVDFIVEEILGLKFKITAFSFFQTNSKGAERLYSVVRDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AG D +I+ DL+ GTGTI +A K V G E+V +A+ A NAKLNN+ N F+
Sbjct: 300 AG--DTKDKIIFDLYSGTGTIAQIMAPVAKKVIGIEIVKEAVEAAKENAKLNNLENCEFI 357
Query: 121 QGD-LNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD L K+ D N KPDI+I DP R G+H K I ++ KAP++VYVSC P + ARD
Sbjct: 358 AGDVLTKV--DELNI--KPDIIILDPPRDGIHPKAINKIINFKAPKLVYVSCKPTSLARD 413
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L ++ YK+K ++ VDMFPHTPH+E V L+E
Sbjct: 414 LKVF--------VENGYKVKKVKCVDMFPHTPHVETVALIE 446
>gi|227530251|ref|ZP_03960300.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
vaginalis ATCC 49540]
gi|227349840|gb|EEJ40131.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
vaginalis ATCC 49540]
Length = 458
Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 125/220 (56%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++ TL+G I + L G+ F IS SF+Q N Q E LY+ D
Sbjct: 244 VQNINDKKTNRLLGDKNKTLWGADEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIDN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL DGS+ V+D +CG GTI L +A+ K VYG E+VP AI DA NAK N I NA FV
Sbjct: 304 AGL--DGSQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIDDAKHNAKRNGIKNAKFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD+VI DP R G+ LI+ K+ +++YVSCNPAT RD+
Sbjct: 362 VGKAEEQFAKWQEDGLKPDVVIVDPPRKGLAESLIEATGKMAPQKVIYVSCNPATLIRDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+G + K +QPVD FP T H+E V +LE
Sbjct: 422 QRFAE-------QGYHVTKPIQPVDQFPQTTHVESVAVLE 454
>gi|407708284|ref|YP_006831869.1| 4Fe-4S ferredoxin [Bacillus thuringiensis MC28]
gi|407385969|gb|AFU16470.1| putative RNA methyltransferase [Bacillus thuringiensis MC28]
Length = 465
Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 314 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 464
>gi|126661911|ref|ZP_01732910.1| putative RNA methyltransferase [Flavobacteria bacterium BAL38]
gi|126625290|gb|EAZ95979.1| putative RNA methyltransferase [Flavobacteria bacterium BAL38]
Length = 470
Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 130/218 (59%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N + +T ++ G+ I E + GL F I+A SF+QTN+ QA LYK+ + AGL
Sbjct: 262 INQKLNDTLYDQDIILFKGRDYILEEMEGLHFSINAKSFYQTNSDQAYELYKITREFAGL 321
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E V DL+ GTGTI +++ K V G E VP+AI DA NA NNI+N F GD
Sbjct: 322 --TGNETVYDLYTGTGTIAQFVSKQAKKVIGVEAVPEAIIDAKANATRNNITNCEFYVGD 379
Query: 124 LNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + D F N +PD++I+DP R GMH +++ LLK P+IVYVSCN AT ARDL
Sbjct: 380 MKNVFNDEFINQHGQPDVIITDPPRDGMHKDVVEMLLKTDVPKIVYVSCNSATQARDLAL 439
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ YK+ ++PVDMFP T H+E V LLE
Sbjct: 440 MDEK---------YKVVRVRPVDMFPQTHHVENVVLLE 468
>gi|168179294|ref|ZP_02613958.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
gi|182669610|gb|EDT81586.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
Length = 450
Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 134/219 (61%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N ++ + ++ LYG+ I E L GL F+I+ +FFQTN+ AE LY +++D
Sbjct: 243 LHTINDTLSDVVQVDKLEILYGRDYIIEELLGLKFKIAPEAFFQTNSKGAEKLYSIVKDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D S++V DL+CGTGTIG +A K V G E++ +A+ A NAKLN ++N F+
Sbjct: 303 LG--DASSKVVFDLYCGTGTIGQIVAPRAKKVIGVELIEEAVKAANENAKLNGLNNCEFI 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ D KPDI+I DP RPG+H +++++K + I+YVSCNP T DL
Sbjct: 361 AGDVAKVIKDVKQ---KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDL 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
YL I YKL+ ++ +DMFPHTPH+E V L
Sbjct: 418 KYL--------IDNGYKLEKVKGMDMFPHTPHVETVVKL 448
>gi|336398620|ref|ZP_08579420.1| 23S rRNA m(5)U-1939 methyltransferase [Prevotella
multisaccharivorax DSM 17128]
gi|336068356|gb|EGN56990.1| 23S rRNA m(5)U-1939 methyltransferase [Prevotella
multisaccharivorax DSM 17128]
Length = 481
Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 129/221 (58%), Gaps = 13/221 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA- 61
VN GN ++G+ T + G I E + L F++ SF+QTNT QA LY + + A
Sbjct: 266 VNNQKGNDTIGDLSLTTFKGTDFIYEMMGDLKFKVGPKSFYQTNTEQAHRLYDIAKSFAF 325
Query: 62 -GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L D ++ DL+ GTGTI +AR V G E VP+AI DA N+++N I N F
Sbjct: 326 KDLSHDERPLIYDLYTGTGTIANYVARSASKVIGIEYVPEAIEDAKINSEINGIENTKFF 385
Query: 121 QGDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD+ KI GDF +PDI+I+DP R GMH ++ ++ K RIVYVSCNPAT ARD
Sbjct: 386 AGDMRKILTGDFIAQHGQPDIIITDPPRAGMHPDVVNVIINAKPRRIVYVSCNPATQARD 445
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Q + Y++ +QPVDMFPHTPH+E V LLE
Sbjct: 446 L---------QLLNTTYRIAEVQPVDMFPHTPHVENVVLLE 477
>gi|422416210|ref|ZP_16493167.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
J1-023]
gi|313623417|gb|EFR93632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
J1-023]
Length = 459
Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 129/222 (58%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + N +PD VI DP R G LIK LL+++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVNEGFRPDAVIVDPPRSGCDQGLIKSLLQVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LL+L
Sbjct: 425 ALLAKK---------YRIRYMQPVDMFPQTAHVETVVLLQLK 457
>gi|163755043|ref|ZP_02162164.1| hypothetical protein KAOT1_03477 [Kordia algicida OT-1]
gi|161325110|gb|EDP96438.1| hypothetical protein KAOT1_03477 [Kordia algicida OT-1]
Length = 470
Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 130/214 (60%), Gaps = 13/214 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
GN ++ ++E Y G+ +I E + GL F+I+A SF+QTN+ QA LYK+ D AGL+ G
Sbjct: 265 GNDTIYDQEVICYAGRDHIFEEMEGLQFKINAKSFYQTNSDQAYELYKITRDFAGLQ--G 322
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
E+V DL+ GTGTI +++ K V G E VP+AI A NA NNI+N F GD+ K+
Sbjct: 323 DELVYDLYTGTGTIAQFVSKKAKKVIGVESVPEAIEAAKENAAFNNITNTEFFVGDMKKV 382
Query: 128 -GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
+F PD++I+DP R GMH +++ +L + ++VYVSCN AT ARDL +
Sbjct: 383 FNAEFIETHGTPDVIITDPPRDGMHADVVQQILNIAPKKVVYVSCNSATQARDLALM--- 439
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+ +Q VDMFP T HIE V LLE
Sbjct: 440 ------DATYKVTKVQAVDMFPQTHHIENVVLLE 467
>gi|404369669|ref|ZP_10975002.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
7_2_43FAA]
gi|226914347|gb|EEH99548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
7_2_43FAA]
Length = 454
Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 132/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN + N +GE+ TL+G+ IT+ + F IS SFFQ N Q EVLY +
Sbjct: 243 IQNVNEADTNVILGEKCITLWGEDTITDYIDEFKFNISPLSFFQVNPKQTEVLYSKALEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E+V D +CGTGTI L L++ K VYG E++ AI +A NAK+NN+ NA F
Sbjct: 303 AGLT--GEEVVFDAYCGTGTITLFLSQKAKKVYGVEIIKAAIDNANENAKINNVKNAEFF 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G +I D + P++++ DP R G +KL++ + K R+VYVSC+P+T ARDL
Sbjct: 361 VGKSEEIIPDLIDKGIIPEVIVVDPPRKGCDIKLLEAIGDAKPNRVVYVSCDPSTLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L KG YK +QPVDMFPHT H+ECV LL+
Sbjct: 421 KILEE-------KG-YKTAKVQPVDMFPHTSHVECVALLK 452
>gi|116627537|ref|YP_820156.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
LMD-9]
gi|386086343|ref|YP_006002217.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus
thermophilus ND03]
gi|386344346|ref|YP_006040510.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus JIM
8232]
gi|116100814|gb|ABJ65960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
thermophilus LMD-9]
gi|312278056|gb|ADQ62713.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus
thermophilus ND03]
gi|339277807|emb|CCC19555.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus JIM
8232]
Length = 453
Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 130/220 (59%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+++ G ++ISA SF+Q NT AE LY++ D
Sbjct: 240 IQNINDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQIAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ V+ VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 300 SDLNSDS--IVIDAYSGIGTIGLSFAKQVREVYGVEVIETAVEDAKKNAERNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ANSAENAMAKWSQDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 D-YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Y G Y+LK +QPVD+FP T HIECV LL
Sbjct: 418 KRYQELG---------YELKKVQPVDLFPQTHHIECVGLL 448
>gi|153931008|ref|YP_001385124.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. ATCC 19397]
gi|153937829|ref|YP_001388593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. Hall]
gi|152927052|gb|ABS32552.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. ATCC 19397]
gi|152933743|gb|ABS39242.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. Hall]
Length = 450
Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 134/219 (61%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N ++ + ++ LYG+ I E L GL F+I+ +FFQTN+ AE LY +++D
Sbjct: 243 LHTINDTLSDVVQVDKLEILYGRDYIIEELLGLKFKIAPEAFFQTNSKGAEKLYSIVKDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D S++V DL+CGTGTIG +A K V G E++ +A+ A NAKLN ++N F+
Sbjct: 303 LG--DASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLNNCEFI 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ D KPDI+I DP RPG+H +++++K + I+YVSCNP T DL
Sbjct: 361 AGDVAKVIKDVKQ---KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDL 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
YL I YKL+ ++ +DMFPHTPH+E V L
Sbjct: 418 KYL--------IDNGYKLEKVKGMDMFPHTPHVETVVKL 448
>gi|16800929|ref|NP_471197.1| hypothetical protein lin1863 [Listeria innocua Clip11262]
gi|422413292|ref|ZP_16490251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
S4-378]
gi|423098459|ref|ZP_17086228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua ATCC
33091]
gi|50401774|sp|Q92AQ7.1|Y1863_LISIN RecName: Full=Uncharacterized RNA methyltransferase lin1863
gi|16414364|emb|CAC97093.1| lin1863 [Listeria innocua Clip11262]
gi|313618389|gb|EFR90415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
S4-378]
gi|370795125|gb|EHN62855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua ATCC
33091]
Length = 453
Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 129/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+G I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPQKTNVIFGDRTKTLWGSDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDS 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LNN++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLTNTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + D+++ DP R G L++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPQWYKNGIVADVLVVDPPRKGCDETLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G Y+ K +QPVDMFP T HIE V +L L
Sbjct: 420 KILT--------EGGYEAKKVQPVDMFPMTTHIEAVTVLTLK 453
>gi|227543578|ref|ZP_03973627.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
reuteri CF48-3A]
gi|338202902|ref|YP_004649047.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
SD2112]
gi|227186418|gb|EEI66489.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
reuteri CF48-3A]
gi|336448142|gb|AEI56757.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
SD2112]
Length = 478
Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 128/220 (58%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++ TL+G I + L G+ F IS SF+Q N Q E LY+ D
Sbjct: 265 VQNINDKRTNRLLGDKNKTLWGADEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIDN 324
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL DG++ V+D +CG GTI L +A+ K VYG E+VP AI DA NAK N+I NA FV
Sbjct: 325 AGL--DGNQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNSIKNAKFV 382
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + A KPD+VI DP R G+ LI+ K+ +++YVSCNPAT RD+
Sbjct: 383 VGKAEEQFAKWQAAGLKPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSCNPATLVRDI 442
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
DQ G + K +QPVD FP T H+E V +LE
Sbjct: 443 KRFA----DQ---GYHVTKPIQPVDQFPQTTHVESVTVLE 475
>gi|422416268|ref|ZP_16493225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
J1-023]
gi|313623370|gb|EFR93595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
J1-023]
Length = 453
Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 129/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+ TL+G I +T+ G+ F ISA SF+Q N Q EVLY+ D
Sbjct: 242 VQNINPQKTNVIFGDRTKTLWGSDIIEDTIHGIRFAISARSFYQVNPLQTEVLYQQAIDS 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA+LNN++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAELNNLTNTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + D+++ DP R G L++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPQWYKNGIVADVLVVDPPRKGCDETLLETILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G Y+ K +QPVDMFP T HIE V +L L
Sbjct: 420 KILT--------EGGYEAKKVQPVDMFPMTTHIEAVTVLTLK 453
>gi|423638314|ref|ZP_17613966.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD156]
gi|401271571|gb|EJR77587.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD156]
Length = 459
Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 129/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEF 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G YK K +QPVDMFPHT H+ECV L L
Sbjct: 425 KVLE--------EGGYKTKEVQPVDMFPHTTHVECVAWLSLE 458
>gi|418027718|ref|ZP_12666332.1| Methyltransferase [Streptococcus thermophilus CNCM I-1630]
gi|354689984|gb|EHE89948.1| Methyltransferase [Streptococcus thermophilus CNCM I-1630]
Length = 453
Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 129/220 (58%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+ + G ++ISA SF+Q NT AE LY++ D
Sbjct: 240 IQNINDKNTNAIFGKEFRTLYGQDTITDRMLGNDYEISAQSFYQVNTEMAEKLYQIAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 300 SDLNSDS--IVIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 D-YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Y G Y+LK +QPVD+FP T HIECV LL
Sbjct: 418 KRYQELG---------YELKKVQPVDLFPQTHHIECVGLL 448
>gi|317127543|ref|YP_004093825.1| TrmA family RNA methyltransferase [Bacillus cellulosilyticus DSM
2522]
gi|315472491|gb|ADU29094.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM
2522]
Length = 469
Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 128/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + G+E LYGK I ET+ F +S +FFQ N Q + LY ++
Sbjct: 257 VQNINPKKTSLVFGDETIVLYGKEKIEETMSEFRFNLSPRAFFQLNPIQTKKLYDAAKEA 316
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTIGL LA K + G +V+ ++I DA NAK + I NA +V
Sbjct: 317 AQL--TGKEKVVDAYCGVGTIGLWLAAGAKEIRGMDVIKESIEDAKNNAKAHGIKNAHYV 374
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + ++ PD+V+ DP R G+ I+ LL++K RIVYVSCNP+T A+++
Sbjct: 375 SGKAEHLLPEWEKEGWHPDVVVVDPPRTGLDETFIQTLLRVKPKRIVYVSCNPSTLAKNV 434
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
D L KG YKLK+LQPVDMFP T +ECV +EL
Sbjct: 435 DALS--------KGGYKLKALQPVDMFPQTAQVECVARIELK 468
>gi|397690143|ref|YP_006527397.1| RNA methyltransferase, TrmA family [Melioribacter roseus P3M]
gi|395811635|gb|AFN74384.1| RNA methyltransferase, TrmA family [Melioribacter roseus P3M]
Length = 481
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 132/224 (58%), Gaps = 12/224 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NN+N + G+ E L+G I +T+ F+ISANSFFQTNT QAE LY+ +
Sbjct: 267 INNINRKKSQVATGDYEIVLFGSGFIYDTIGEKVFRISANSFFQTNTLQAEKLYRTALEF 326
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A ++ G EIV DL+ G GTI + ++ ++YG+E V AI DA N +LN N
Sbjct: 327 ANMK--GDEIVYDLYSGAGTIPIFISENAGYIYGFENVEPAIEDARINIELNKTGNFKPF 384
Query: 121 QGDLNK--IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR 178
DLNK + N P PDI+I+DP R GMH K + +L + +IVY+SCNPAT AR
Sbjct: 385 PTDLNKSFLPIIEENKIPLPDILIADPPRSGMHPKTVNDILSVHPQKIVYISCNPATQAR 444
Query: 179 DLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
D+ LC G YKL ++PVDMFPHT HIE V LLE +
Sbjct: 445 DVKLLCD--------GGYKLIKIKPVDMFPHTYHIENVALLEYT 480
>gi|387909435|ref|YP_006339741.1| trNA methyltransferase, TrmA family [Streptococcus thermophilus
MN-ZLW-002]
gi|387574370|gb|AFJ83076.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus
MN-ZLW-002]
Length = 453
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 130/220 (59%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+++ G ++ISA SF+Q NT AE LY++ D
Sbjct: 240 IQNINDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQIAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ V+ VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 300 SDLNSDS--IVIDAYSGIGTIGLSFAKQVREVYGVEVIETAVEDAKKNAERNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ADSAENAMAKWSQDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 D-YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Y G Y+LK +QPVD+FP T HIECV LL
Sbjct: 418 KRYQELG---------YELKKVQPVDLFPQTHHIECVGLL 448
>gi|346316052|ref|ZP_08857559.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345903628|gb|EGX73390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 442
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 129/217 (59%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N N +G++E L+G+ IT+++ L F IS+ SF+Q N Q E+LY + A
Sbjct: 233 NLNVRDDNVILGDKEQLLFGEHAITDSIHDLKFSISSKSFYQVNPRQTEILYGKALEFAQ 292
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E VLDL+CG GTI + LA+ KHV G E+VPQAI DA +NA LN I+N FV
Sbjct: 293 L--TGKEAVLDLYCGVGTISMFLAQQAKHVTGIEIVPQAIRDARKNAALNGIANIDFVCS 350
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
D PD+++ DP R G ++ I ++ ++ RIVYVSC+P T ARDL
Sbjct: 351 DAADYAKKLCEQGAHPDVIVVDPPRKGCDVQTIDSMVMMQPKRIVYVSCDPGTLARDLKL 410
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L KG Y+ + +QP+DMFP T H+ECVCL+
Sbjct: 411 L-------EEKG-YRTEIVQPLDMFPFTHHVECVCLI 439
>gi|452975699|gb|EME75517.1| RumA-like 23S rRNA methyltransferase YefA [Bacillus sonorensis L12]
Length = 461
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 128/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E ++G+ I +T+ G+ F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPKKTNVIFGDETTVIWGEEYIYDTIGGIKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I NA F
Sbjct: 307 AEL--NGEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGIENAEFE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++++K R+VYVSCNP T ARDL
Sbjct: 365 VGEAEAVIPKWYEEGITADTLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y +QPVDMFPHT H+ECV +L +
Sbjct: 425 RVLED--------GGYATLEVQPVDMFPHTSHVECVAVLRIK 458
>gi|225174261|ref|ZP_03728260.1| RNA methyltransferase, TrmA family [Dethiobacter alkaliphilus AHT
1]
gi|225170046|gb|EEG78841.1| RNA methyltransferase, TrmA family [Dethiobacter alkaliphilus AHT
1]
Length = 455
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 122/220 (55%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT GNT +G EE TL G+ + E L L F +SA SFFQ N Q EVLY +
Sbjct: 244 VQNINTRKGNTILGNEELTLLGRPWLREKLGNLHFHVSARSFFQVNPLQTEVLYNKALEY 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E V DL+CG GTI L LAR V G E V A+ DA NA +NNI NA F
Sbjct: 304 ANL--SGTETVFDLYCGIGTISLFLARKAAKVVGVESVEAAVHDARENANVNNIKNAEFH 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + D+V+ DP R G KL+ + ++ RIVYVSCNPAT ARDL
Sbjct: 362 TGTAETVVPRLFKQGYHADVVVVDPPRKGCDEKLLATIAAMRPQRIVYVSCNPATLARDL 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YL QN Y QPVDMFPHT H+E V LLE
Sbjct: 422 KYL-----QQN---GYNPIEAQPVDMFPHTSHVETVVLLE 453
>gi|229171165|ref|ZP_04298759.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3]
gi|228612343|gb|EEK69571.1| Uncharacterized RNA methyltransferase [Bacillus cereus MM3]
Length = 465
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 314 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPKWYKEGIIADTMVVDPPRKGCDDALLNTIIDMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 464
>gi|55820731|ref|YP_139173.1| TrmA family tRNA methyltransferase [Streptococcus thermophilus LMG
18311]
gi|55736716|gb|AAV60358.1| tRNA methyltransferase, TrmA family [Streptococcus thermophilus LMG
18311]
Length = 453
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 129/220 (58%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+++ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 300 SDLNSDS--IVIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ANSAENAMAKWSQDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 D-YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Y G Y+LK +QPVD+FP T HIECV LL
Sbjct: 418 KRYQELG---------YELKKVQPVDLFPQTHHIECVGLL 448
>gi|229101137|ref|ZP_04231903.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28]
gi|228682265|gb|EEL36376.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-28]
Length = 465
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 314 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPKWYKEGIIADTMVVDPPRKGCDDALLNTIIDMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 464
>gi|333383751|ref|ZP_08475406.1| hypothetical protein HMPREF9455_03572 [Dysgonomonas gadei ATCC
BAA-286]
gi|332827346|gb|EGK00106.1| hypothetical protein HMPREF9455_03572 [Dysgonomonas gadei ATCC
BAA-286]
Length = 503
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 125/218 (57%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN +T +E T G I E + GL F+I SF+QTN+ QA LYK+ D A L
Sbjct: 295 VNQKANDTITDQEVLTWKGNDFIYEEMEGLKFKIGPKSFYQTNSEQAYNLYKVASDFARL 354
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
+G E+V DL+ GTGTI +AR K V G E V AI DA N+ N I N F GD
Sbjct: 355 --NGDELVYDLYTGTGTIANFVARQSKKVVGIEYVEDAIEDARFNSMNNKIDNTLFYAGD 412
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I DF N +PD++I+DP R GMH +IK +L + RIVYVSCNPAT ARDL
Sbjct: 413 MKDILTQDFINEHGRPDVIITDPPRAGMHDDVIKSILFAEPQRIVYVSCNPATQARDLSL 472
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YK+ +QPVDMFPHT H+E V LLE
Sbjct: 473 LDEK---------YKVTKVQPVDMFPHTHHVENVVLLE 501
>gi|373456148|ref|ZP_09547946.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister
succinatiphilus YIT 11850]
gi|371934153|gb|EHO61964.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dialister
succinatiphilus YIT 11850]
Length = 455
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
+NV S GN +G+ + L+G+ +T TL GL+F++S SFFQ + QAE LY + A
Sbjct: 246 HNVQKSPGNVILGQTLHHLWGRKTLTATLAGLSFEVSPFSFFQVHKDQAEKLYAKALEYA 305
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L GSE V+D +CGTGTI L LA+ K V G E+V AI DA RNA N++ N F
Sbjct: 306 DL--TGSETVIDAYCGTGTISLCLAKKAKKVIGIEIVEAAIEDAGRNADFNHVENVEFHA 363
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D K+ +PD+++ DP R G ++K ++ RIVYVSCNPAT ARD
Sbjct: 364 ADAGKLMPKLYKEGLRPDVIVMDPVRAGCSEDVLKAAAAMEPKRIVYVSCNPATFARDAK 423
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L G+G Y LK +QPVDMFP T H+E V LLE
Sbjct: 424 VLA-GLG-------YTLKKVQPVDMFPQTMHVETVALLE 454
>gi|332523646|ref|ZP_08399898.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus
str. Jelinkova 176]
gi|332314910|gb|EGJ27895.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus porcinus
str. Jelinkova 176]
Length = 453
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN GN G++ LYG+ +IT+ + G + +SA SF+Q NT AE LY++ D
Sbjct: 240 MQNVNDQNGNAIFGKDFKVLYGQDHITDRMLGNDYMVSAQSFYQVNTVMAEKLYQVAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L + ++V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA+ N I NA FV
Sbjct: 300 SDL--NAEDVVIDAYSGIGTIGLSFAKKVKKVYGVEVIEAAVKDARKNAERNGIHNAEFV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + KP +++ DP R G+ IK + +I YVSCNPAT ARD+
Sbjct: 358 IGSAEATMEKWSKEGIKPSVILVDPPRKGLTESFIKASAAMAPKKITYVSCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G Y LK +QPVD+FPHT H+ECV LL+ S
Sbjct: 418 K-LYQELG-------YDLKKVQPVDLFPHTHHVECVVLLQRS 451
>gi|212638138|ref|YP_002314658.1| methyltransferase [Anoxybacillus flavithermus WK1]
gi|212559618|gb|ACJ32673.1| Methyltransferase [Anoxybacillus flavithermus WK1]
Length = 456
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 129/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +GE+ L+G I + + + F ISA SF+Q N Q +VLY+ +
Sbjct: 243 VQNINPKRTNVIMGEQTRVLWGSEYIYDYIGDIQFAISARSFYQVNPEQTKVLYEKALEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ K VYG EVVP+AI DA RNA+LN ++N F
Sbjct: 303 AEL--TGEETVIDAYCGIGTISLFLAKNAKKVYGVEVVPEAIEDAKRNAELNGMTNVEFA 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + K D ++ DP R G L++ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYEQGVKADCIVVDPPRKGCDESLLQTIIAMKPKRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G YK +QPVDMFPHT H+ECV LE+S
Sbjct: 421 RILE--------DGGYKTLEVQPVDMFPHTVHVECVVKLEVS 454
>gi|421452041|ref|ZP_15901402.1| 23S rRNA m(5)U methyltransferase [Streptococcus salivarius K12]
gi|400182472|gb|EJO16734.1| 23S rRNA m(5)U methyltransferase [Streptococcus salivarius K12]
Length = 452
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 128/220 (58%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+ + G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNTNAIFGKEFRTLYGQDTITDRMLGNDYEISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 300 SDLNSDS--IVIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPDI+I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ADSAENTMAKWSKDGIKPDIIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 D-YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Y G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 KRYQELG---------YELKKVQPVDLFPQTHHVECVSLL 448
>gi|229119979|ref|ZP_04249234.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201]
gi|228663445|gb|EEL19030.1| Uncharacterized RNA methyltransferase [Bacillus cereus 95/8201]
Length = 458
Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAKKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|376262823|ref|YP_005149543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
BNL1100]
gi|373946817|gb|AEY67738.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
BNL1100]
Length = 460
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 134/218 (61%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVNT N +G++ +YG+ IT+ + F+IS SFFQ N Q EVLY+ + AG
Sbjct: 249 NVNTRNTNIILGDKNICIYGQKYITDFIGSFRFEISPLSFFQVNPIQTEVLYEKALEYAG 308
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E V DL+CG GTI L L++ K V G EVV AISDA RNA++N++SN F+ G
Sbjct: 309 L--SGNETVFDLYCGIGTISLFLSQKAKRVVGVEVVADAISDAKRNAEINDVSNVEFLVG 366
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K+ + K D+V+ DP R G L+ L++++ RIVYVSCNP+T ARDL Y
Sbjct: 367 EAEKVIPELYAQGVKADVVVVDPPRKGCDEVLLNTLVEMQPQRIVYVSCNPSTLARDLKY 426
Query: 183 LC-HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L HG +++K +QPVDMFP T H+E V L+
Sbjct: 427 LTEHG---------FEVKEVQPVDMFPWTGHVETVVLM 455
>gi|313205382|ref|YP_004044039.1| 23S rRNA m(5)u-1939 methyltransferase [Paludibacter propionicigenes
WB4]
gi|312444698|gb|ADQ81054.1| 23S rRNA m(5)U-1939 methyltransferase [Paludibacter propionicigenes
WB4]
Length = 469
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 128/219 (58%), Gaps = 14/219 (6%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N+ +T +E + G I E + GL F+I SF+QTN+ QA LYK+ + A L
Sbjct: 261 INSKANDTITDQEIHIFKGNECIYEEMEGLKFKIGPKSFYQTNSDQAYELYKITRNFAQL 320
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI ++ K V G E VP+AI DA N+++N ISN F GD
Sbjct: 321 T--GNELVYDLYTGTGTIANFISHQAKQVIGIEYVPEAIEDAFVNSEINKISNTLFYAGD 378
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I F KPD++I+DP R GMH +I +L RIVYVSCNPAT ARDL
Sbjct: 379 MKDILNAAFIEEHGKPDVIITDPPRAGMHEDVINAILFAAPERIVYVSCNPATQARDLSL 438
Query: 183 L-CHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L C YK+ ++QPVDMFPHT H+E V LLE
Sbjct: 439 LDCQ----------YKVTAIQPVDMFPHTHHVENVVLLE 467
>gi|345883542|ref|ZP_08834983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. C561]
gi|345043647|gb|EGW47702.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. C561]
Length = 482
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 131/219 (59%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + + + TL+ G +I ET+ L F++ SF+QTNT QA LY + + A
Sbjct: 273 VDNQKGNDTFNDLDLTLFKGNDHIFETMEDLKFKVGPKSFYQTNTEQAYHLYSVAREFAN 332
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E+V DL+ GTGTI +A+ K V G E VP+AI DA N+++N I N F G
Sbjct: 333 LT--GDELVYDLYTGTGTIANFVAKKAKKVIGIEYVPEAIEDAKVNSEVNKIDNTLFYAG 390
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I DF + +PD++I+DP R GMH ++ +L RIVYVSCNPAT ARDL
Sbjct: 391 DMKDILTEDFIHEHGRPDVIITDPPRAGMHQDVVNVILGASPKRIVYVSCNPATQARDLA 450
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YK+ ++QPVDMFPHTPH+E + LLE
Sbjct: 451 LL---------DVDYKVAAVQPVDMFPHTPHVENIVLLE 480
>gi|297545033|ref|YP_003677335.1| TrmA family RNA methyltransferase [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842808|gb|ADH61324.1| RNA methyltransferase, TrmA family [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 453
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 133/217 (61%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+NT N +G++ T+YG NI + ++ + F+IS SFFQ N Q EVLY + + A
Sbjct: 243 NINTKRTNVIMGKDNITIYGSDNIIDYIKDIKFEISPLSFFQVNPVQTEVLYGKVLEYAD 302
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G+E V+D++CG GTI L A+ VYG E V QA+ DA RNA +N I N F+ G
Sbjct: 303 LK--GNETVIDVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISG 360
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
K+ + + K D+VI DP R G + +++ ++ + +IVYVSCNP+T ARDL Y
Sbjct: 361 QAEKVMPELVDKGVKADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLARDLRY 420
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L + KG YK +QPVDMFP+T H+E VCL+
Sbjct: 421 L-------DDKG-YKTMEVQPVDMFPYTHHVESVCLI 449
>gi|423461605|ref|ZP_17438402.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5X2-1]
gi|401136547|gb|EJQ44136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG5X2-1]
Length = 458
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGIIADTMVVDPPRKGCDDALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|256847809|ref|ZP_05553254.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
coleohominis 101-4-CHN]
gi|256715498|gb|EEU30474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
coleohominis 101-4-CHN]
Length = 458
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 128/220 (58%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G+++ TL+G I + L G+ F IS SF+Q N Q E LY+ D
Sbjct: 244 VQNINDRRTNRLLGDQDVTLWGADEIHDQLLGIDFAISPLSFYQVNPQQTERLYQAAIDN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DGS+ V+D +CG GTI L +A+ K VYG E+VP AI+DA +NA+ N I+NA FV
Sbjct: 304 AEL--DGSQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIADAKKNAQNNEITNAEFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD+VI DP R G+ LI+ K+ +++YVSCNPAT RD+
Sbjct: 362 VGKAEEQFAKWQAEGLKPDVVIVDPPRKGLAESLIEATGKMAPKKVIYVSCNPATLVRDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+G + K +QPVD FP T H+E V +LE
Sbjct: 422 QRFAE-------QGYHVTKPIQPVDQFPQTTHVESVTVLE 454
>gi|229154085|ref|ZP_04282210.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342]
gi|228629365|gb|EEK86067.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 4342]
Length = 465
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 314 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLSTIIDMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 464
>gi|150005861|ref|YP_001300605.1| RNA methyltransferase [Bacteroides vulgatus ATCC 8482]
gi|149934285|gb|ABR40983.1| RNA methyltransferase [Bacteroides vulgatus ATCC 8482]
Length = 473
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 128/218 (58%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN +T E G +I E + GL F+I A SF+QTN+ QA LYK+ + AGL
Sbjct: 264 VNNKCNDTINDLEVMVFKGNDHIFEEMEGLRFKIGAKSFYQTNSGQAYNLYKVARNFAGL 323
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI ++R K V G E VP+AI DA N+ +N I N F GD
Sbjct: 324 --TGKELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGD 381
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I +F N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 382 MKDILTQEFINQHGRPDVIITDPPRAGMHNDVINTILFAEPQRIVYVSCNPATQARDLSL 441
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YK+ ++QPVDMFPHT H+E V LLE
Sbjct: 442 L---------DAKYKVMAVQPVDMFPHTHHVENVVLLE 470
>gi|163938323|ref|YP_001643207.1| RNA methyltransferase [Bacillus weihenstephanensis KBAB4]
gi|423515169|ref|ZP_17491650.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA2-4]
gi|423664351|ref|ZP_17639516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM022]
gi|163860520|gb|ABY41579.1| RNA methyltransferase, TrmA family [Bacillus weihenstephanensis
KBAB4]
gi|401167585|gb|EJQ74866.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA2-4]
gi|401293231|gb|EJR98876.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM022]
Length = 458
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|384098461|ref|ZP_09999577.1| RNA methyltransferase [Imtechella halotolerans K1]
gi|383835718|gb|EID75141.1| RNA methyltransferase [Imtechella halotolerans K1]
Length = 469
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 130/214 (60%), Gaps = 13/214 (6%)
Query: 9 GNTSVGEEEYT-LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
GN ++ +++ +G+ +I E + GL F+I+A SF+QTN+ QA LYK+ D AGL G
Sbjct: 265 GNDTIYDQDVICFHGRDHIFEEMEGLKFKINAKSFYQTNSEQAYELYKITRDFAGL--TG 322
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL-NK 126
+E+V DL+ GTGTI +A+ K V G E VP+AI DA NA+ N I N F GD+ N
Sbjct: 323 NELVYDLYTGTGTIAQFVAKNAKKVIGVEAVPEAIEDAKTNAQNNTIENVAFFVGDMKNV 382
Query: 127 IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
+F PDI+I+DP R GMH ++K +L + +IVYVSCN AT ARDL +
Sbjct: 383 FNQEFIETHGIPDIIITDPPRDGMHADVVKQILSVSPQKIVYVSCNSATQARDLALM--- 439
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+ +QPVDMFP T H+E V LLE
Sbjct: 440 ------DSMYKVTKVQPVDMFPQTHHVENVVLLE 467
>gi|345880319|ref|ZP_08831873.1| hypothetical protein HMPREF9431_00537 [Prevotella oulorum F0390]
gi|343923517|gb|EGV34204.1| hypothetical protein HMPREF9431_00537 [Prevotella oulorum F0390]
Length = 479
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 129/219 (58%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEY-TLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + + + T G I ET+ L F++ SF+QTNT QA LY + A
Sbjct: 270 VDNQKGNDTFSDLDLITFRGTDFIYETMEDLKFKVGPKSFYQTNTEQAFHLYDVARRFAA 329
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L GSE+V DL+ GTGTI +AR + V G E VP+AI DA N+ +N+I N F G
Sbjct: 330 LT--GSELVYDLYTGTGTIANFIARKAQKVIGIEYVPEAIEDAKVNSAINHIDNTLFYAG 387
Query: 123 DL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ N + DF +PD++I+DP R GMH ++K +L RIVYVSCNPAT ARDL
Sbjct: 388 DMKNILTDDFIAEHGRPDVIITDPPRAGMHADVVKVILNAAPQRIVYVSCNPATQARDL- 446
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + Y++ +QPVDMFPHTPH+E V LLE
Sbjct: 447 --------QLLDAQYRVVQVQPVDMFPHTPHVENVVLLE 477
>gi|229131321|ref|ZP_04260222.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196]
gi|228652142|gb|EEL08078.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST196]
Length = 465
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 314 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 464
>gi|423531620|ref|ZP_17508065.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB1-1]
gi|402443657|gb|EJV75553.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuB1-1]
Length = 458
Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|254556113|ref|YP_003062530.1| RNA methyltransferase [Lactobacillus plantarum JDM1]
gi|254045040|gb|ACT61833.1| RNA methyltransferase [Lactobacillus plantarum JDM1]
Length = 457
Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 125/220 (56%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +G L GK+ I + L GLTF ISA SF+Q N Q E LY+L D
Sbjct: 244 IQNVNSKKTNVILGPVNNVLAGKATIDDQLLGLTFAISAQSFYQVNPQQTEKLYQLAIDQ 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G+E V+D + G GTI LT+A+ K VYG E+VP AI +A +NA N I+NATFV
Sbjct: 304 AGLT--GNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + + KPD+++ DP R G+ IK ++ R+VY+SCNP+T RD
Sbjct: 362 LDSAEKAMAKWQSDGVKPDVIVVDPPRKGLDADFIKSAGEMAPKRVVYISCNPSTLVRDA 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G + +QPVD FP TPHIE V +LE
Sbjct: 422 QRFAE-------YGYHISAPVQPVDQFPQTPHIESVTVLE 454
>gi|380032064|ref|YP_004889055.1| 23S rRNA methyltransferase, TrmA family [Lactobacillus plantarum
WCFS1]
gi|448820703|ref|YP_007413865.1| putative RNA methyltransferase [Lactobacillus plantarum ZJ316]
gi|50401551|sp|Q88XP4.1|Y1151_LACPL RecName: Full=Uncharacterized RNA methyltransferase lp_1151
gi|342241307|emb|CCC78541.1| 23S rRNA methyltransferase, TrmA family [Lactobacillus plantarum
WCFS1]
gi|448274200|gb|AGE38719.1| putative RNA methyltransferase [Lactobacillus plantarum ZJ316]
Length = 457
Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 125/220 (56%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +G L GK+ I + L GLTF ISA SF+Q N Q E LY+L D
Sbjct: 244 IQNVNSKKTNVILGPVNNVLAGKATIDDQLLGLTFAISAQSFYQVNPQQTEKLYQLAIDQ 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G+E V+D + G GTI LT+A+ K VYG E+VP AI +A +NA N I+NATFV
Sbjct: 304 AGLT--GNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ R+VY+SCNP+T RD+
Sbjct: 362 LDSAEKAMAKWQADGVKPDVIVVDPPRKGLDADFIKSAGEMAPKRVVYISCNPSTLVRDV 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G + +QPVD FP TPHIE V +LE
Sbjct: 422 QRFAE-------YGYHISAPVQPVDQFPQTPHIESVTVLE 454
>gi|365163416|ref|ZP_09359527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus sp.
7_6_55CFAA_CT2]
gi|363615894|gb|EHL67350.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus sp.
7_6_55CFAA_CT2]
Length = 458
Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|384184398|ref|YP_005570294.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410672686|ref|YP_006925057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus thuringiensis
Bt407]
gi|326938107|gb|AEA14003.1| tRNA (Uracil-5-) -methyltransferase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409171815|gb|AFV16120.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus thuringiensis
Bt407]
Length = 458
Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 131/221 (59%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA+LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAELNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|116873139|ref|YP_849920.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742017|emb|CAK21141.1| RNA methyltransferase [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 458
Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 129/222 (58%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + N +PD VI DP R G LIK LL+++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVNDGFRPDAVIVDPPRSGCDQGLIKSLLEVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LL+L
Sbjct: 425 ALLAKK---------YRIRYMQPVDMFPQTAHVETVVLLQLK 457
>gi|414084845|ref|YP_006993556.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Carnobacterium
maltaromaticum LMA28]
gi|412998432|emb|CCO12241.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Carnobacterium
maltaromaticum LMA28]
Length = 434
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 129/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN S N +G E L+G+ T+TL G TFQISA++F+Q N Q E LY+ + +
Sbjct: 221 IQNVNPSRTNKILGPENIVLWGQDYFTDTLLGNTFQISASAFYQVNPTQTEKLYQTVLEY 280
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L+LA+ K VYG EVV A+ +A NAKLN I N TF
Sbjct: 281 AEL--TGKETVIDAYCGIGTISLSLAKEAKEVYGIEVVEAAVENAKNNAKLNGIENVTFE 338
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ ++ D+++ DP R G+ I+ L +K +I+YVSCNPAT ARDL
Sbjct: 339 AGLAEEVMVEWAEKELAVDLLVVDPPRKGLEGSFIEAALTMKPNKIIYVSCNPATLARDL 398
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G YK++ +QPVD+FP T H+E LL
Sbjct: 399 ALLAD--------GGYKVEKVQPVDLFPQTSHVESCSLL 429
>gi|424762802|ref|ZP_18190286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX1337RF]
gi|402423907|gb|EJV56106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX1337RF]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIKF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENVYYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ Y +K +QPVD+FP T H+ECV L+
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHVECVVLM 453
>gi|423421512|ref|ZP_17398601.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3X2-1]
gi|401098312|gb|EJQ06327.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3X2-1]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|423370407|ref|ZP_17347829.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD142]
gi|401074071|gb|EJP82478.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD142]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|268318102|ref|YP_003291821.1| TrmA family RNA methyltransferase [Rhodothermus marinus DSM 4252]
gi|262335636|gb|ACY49433.1| RNA methyltransferase, TrmA family [Rhodothermus marinus DSM 4252]
Length = 466
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 137/220 (62%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+N +N+ S GE YT++G I + + F+I+ ++FFQTNT QAE LY++ +
Sbjct: 255 VNTINSRPAQVSYGEATYTIFGPGVIHDCIGPFRFEIAPDAFFQTNTEQAERLYEVAREL 314
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR D ++V DL+CGTGTI + +A V+HV G E+V A+ +A NA N I+N TFV
Sbjct: 315 AALRPD--DLVYDLYCGTGTISIFIAPHVRHVVGVELVASAVENARANAAANGITNCTFV 372
Query: 121 QGDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GDL ++ F +PD+VI DP R GMH K+++ + +L+ R VYVSCNP T ARD
Sbjct: 373 AGDLLEVLTPAFVRTHGRPDVVIVDPPRAGMHPKVVRRIGQLRPERFVYVSCNPQTQARD 432
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L L + Y+++++QPVD+FPHT H+E V L
Sbjct: 433 LKLL---------RDLYRIEAVQPVDLFPHTDHVESVVAL 463
>gi|319641039|ref|ZP_07995743.1| RNA methyltransferase [Bacteroides sp. 3_1_40A]
gi|345519307|ref|ZP_08798734.1| RNA methyltransferase [Bacteroides sp. 4_3_47FAA]
gi|254834751|gb|EET15060.1| RNA methyltransferase [Bacteroides sp. 4_3_47FAA]
gi|317387283|gb|EFV68158.1| RNA methyltransferase [Bacteroides sp. 3_1_40A]
Length = 473
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 128/218 (58%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN +T E G +I E + GL F+I A SF+QTN+ QA LYK+ + AGL
Sbjct: 264 VNNKCNDTINDLEVMVFKGNDHIFEEMEGLRFKIGAKSFYQTNSGQAYNLYKVARNFAGL 323
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI ++R K V G E VP+AI DA N+ +N I N F GD
Sbjct: 324 --TGKELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGD 381
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I +F N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 382 MKDILTQEFINQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYVSCNPATQARDLSL 441
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YK+ ++QPVDMFPHT H+E V LLE
Sbjct: 442 L---------DAKYKVMAVQPVDMFPHTHHVENVVLLE 470
>gi|423480465|ref|ZP_17457155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6X1-2]
gi|401147401|gb|EJQ54903.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6X1-2]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|229055159|ref|ZP_04195586.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603]
gi|228721151|gb|EEL72681.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH603]
Length = 465
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 314 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 464
>gi|300766632|ref|ZP_07076549.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|300495732|gb|EFK30883.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
Length = 457
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 125/220 (56%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +G L GK+ I + L GLTF ISA SF+Q N Q E LY+L D
Sbjct: 244 IQNVNSKKTNVILGPVNNVLAGKATIDDQLLGLTFAISAQSFYQVNPQQTEKLYQLAIDQ 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G+E V+D + G GTI LT+A+ K VYG E+VP AI +A +NA N I+NATFV
Sbjct: 304 AGLT--GNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ R+VY+SCNP+T RD+
Sbjct: 362 LDSAEKAMAKWQADGVKPDVIVVDPPRKGLDADFIKSAGEMAPKRVVYISCNPSTLVRDV 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G + +QPVD FP TPHIE V +LE
Sbjct: 422 QRFAE-------YGYHISAPVQPVDQFPQTPHIESVTVLE 454
>gi|423433988|ref|ZP_17410969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4X12-1]
gi|401127447|gb|EJQ35170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4X12-1]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|423314734|ref|ZP_17292667.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus
CL09T03C04]
gi|392681481|gb|EIY74839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus
CL09T03C04]
Length = 473
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 128/218 (58%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN +T E G +I E + GL F+I A SF+QTN+ QA LYK+ + AGL
Sbjct: 264 VNNKCNDTINDLEVMVFKGNDHIFEEMEGLRFKIGAKSFYQTNSGQAYNLYKVARNFAGL 323
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI ++R K V G E VP+AI DA N+ +N I N F GD
Sbjct: 324 --TGKELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGD 381
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I +F N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 382 MKDILTQEFINQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYVSCNPATQARDLSL 441
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YK+ ++QPVDMFPHT H+E V LLE
Sbjct: 442 L---------DAKYKVMAVQPVDMFPHTHHVENVVLLE 470
>gi|254992434|ref|ZP_05274624.1| hypothetical protein LmonocytoFSL_04674 [Listeria monocytogenes FSL
J2-064]
Length = 459
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 128/222 (57%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + N +PD VI DP R G LIK LL ++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVNEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LL+L
Sbjct: 425 ALLAKK---------YRIRYMQPVDMFPQTAHVETVVLLQLK 457
>gi|409123266|ref|ZP_11222661.1| RNA methyltransferase [Gillisia sp. CBA3202]
Length = 469
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 132/214 (61%), Gaps = 13/214 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
GN ++ ++E Y G+ I E + GL F+I+A SF+QTN+ QA LYK+ D AGL G
Sbjct: 265 GNDTIYDQEVICYKGEDYIFEEMEGLKFKINAKSFYQTNSAQAYELYKVTRDFAGLT--G 322
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
+E+V DL+ GTGTI +A+ K V G E VP AI DA NA NNI N F GD+ K+
Sbjct: 323 NELVYDLYTGTGTIAQFVAKEAKKVVGIEAVPVAIEDAKENATRNNIENTEFYAGDMRKV 382
Query: 128 -GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
DF NA PDI+I+DP R GMH ++ ++ + RIVYVSCN AT ARDL L
Sbjct: 383 FTQDFINAHGHPDIIITDPPRDGMHKDVVAQIIGILPQRIVYVSCNSATQARDLALL--- 439
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
D++ YK+ ++PVDMFP T H+E V LE
Sbjct: 440 --DEH----YKVTRVRPVDMFPQTFHVENVVCLE 467
>gi|294775567|ref|ZP_06741077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus
PC510]
gi|294450617|gb|EFG19107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus
PC510]
Length = 473
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 128/218 (58%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN +T E G +I E + GL F+I A SF+QTN+ QA LYK+ + AGL
Sbjct: 264 VNNKCNDTINDLEVMVFKGNDHIFEEMEGLRFKIGAKSFYQTNSGQAYNLYKVARNFAGL 323
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI ++R K V G E VP+AI DA N+ +N I N F GD
Sbjct: 324 --TGKELVYDLYTGTGTIANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGD 381
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I +F N +PD++I+DP R GMH +I +L + RIVYVSCNPAT ARDL
Sbjct: 382 MKDILTQEFINQHGRPDVIITDPPRAGMHDDVINTILFAEPQRIVYVSCNPATQARDLSL 441
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YK+ ++QPVDMFPHT H+E V LLE
Sbjct: 442 L---------DAKYKVMAVQPVDMFPHTHHVENVVLLE 470
>gi|46907934|ref|YP_014323.1| RNA methyltransferase [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094248|ref|ZP_00231958.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b
H7858]
gi|226224306|ref|YP_002758413.1| similar to RNA methyltransferase [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|254932851|ref|ZP_05266210.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
gi|255520198|ref|ZP_05387435.1| hypothetical protein LmonocFSL_03022 [Listeria monocytogenes FSL
J1-175]
gi|386732443|ref|YP_006205939.1| RNA methyltransferase [Listeria monocytogenes 07PF0776]
gi|405750054|ref|YP_006673520.1| TrmA/RumA/YfjO family RNA methyltransferase [Listeria monocytogenes
ATCC 19117]
gi|405752929|ref|YP_006676394.1| TrmA/RumA/YfjO family RNA methyltransferase [Listeria monocytogenes
SLCC2378]
gi|405755865|ref|YP_006679329.1| TrmA/RumA/YfjO family RNA methyltransferase [Listeria monocytogenes
SLCC2540]
gi|406704485|ref|YP_006754839.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
monocytogenes L312]
gi|417315358|ref|ZP_12102038.1| RNA methyltransferase [Listeria monocytogenes J1816]
gi|424823465|ref|ZP_18248478.1| hypothetical protein LMOSA_26260 [Listeria monocytogenes str. Scott
A]
gi|51316674|sp|Q71YW4.1|Y1727_LISMF RecName: Full=Uncharacterized RNA methyltransferase LMOf2365_1727
gi|46881203|gb|AAT04500.1| RNA methyltransferase, TrmA family [Listeria monocytogenes serotype
4b str. F2365]
gi|47017376|gb|EAL08199.1| RNA methyltransferase, TrmA family [Listeria monocytogenes str. 4b
H7858]
gi|225876768|emb|CAS05477.1| Putative similar to RNA methyltransferase [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293584405|gb|EFF96437.1| RNA methyltransferase [Listeria monocytogenes HPB2262]
gi|328466462|gb|EGF37605.1| RNA methyltransferase [Listeria monocytogenes J1816]
gi|332312145|gb|EGJ25240.1| hypothetical protein LMOSA_26260 [Listeria monocytogenes str. Scott
A]
gi|384391201|gb|AFH80271.1| RNA methyltransferase [Listeria monocytogenes 07PF0776]
gi|404219254|emb|CBY70618.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
monocytogenes ATCC 19117]
gi|404222129|emb|CBY73492.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
monocytogenes SLCC2378]
gi|404225065|emb|CBY76427.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
monocytogenes SLCC2540]
gi|406361515|emb|CBY67788.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
monocytogenes L312]
Length = 459
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 128/222 (57%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + N +PD VI DP R G LIK LL ++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVNEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LL+L
Sbjct: 425 ALLAKK---------YRIRYMQPVDMFPQTAHVETVVLLQLK 457
>gi|255657938|ref|ZP_05403347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mitsuokella multacida
DSM 20544]
gi|260850131|gb|EEX70138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mitsuokella multacida
DSM 20544]
Length = 457
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+ T N +G E L+GK I + + LTF IS SFFQ NT QAEVLY + A
Sbjct: 245 QNIQTYRNNVIMGRETNLLWGKPTILDRIGRLTFHISPRSFFQVNTKQAEVLYNKALEFA 304
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L+ G E V+D +CGTGTI L LA+ + VYG E+V AI DA +NA+ NN+ NA F+
Sbjct: 305 NLK--GEETVIDAYCGTGTITLFLAQKAREVYGIEIVKPAILDAQKNARDNNVRNAEFIV 362
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
GD ++ + D+V+ DP R G ++K ++ RIVYVSCNPA+ ARDL
Sbjct: 363 GDATEVMPRLYKQGVRADVVVVDPPRAGCTETVLKTFANMQPDRIVYVSCNPASLARDLA 422
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G YK K +QPVDMFP T H+E V L+E
Sbjct: 423 VL-EQLG-------YKAKKVQPVDMFPMTSHVETVALIE 453
>gi|167039842|ref|YP_001662827.1| RNA methyltransferase [Thermoanaerobacter sp. X514]
gi|166854082|gb|ABY92491.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X514]
Length = 454
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 131/217 (60%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+NT N +GE+ T+YG NI + ++ + F+IS SFFQ N Q EVLY + A
Sbjct: 244 NINTKRTNVIMGEDNITIYGSDNIIDYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYAD 303
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G E V+D++CG GTI L A+ VYG E V QA+ DA RNA +N I N F+ G
Sbjct: 304 LK--GDETVIDVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISG 361
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
K+ + + K D+VI DP R G + +++ ++ + +IVYVSCNP+T ARDL Y
Sbjct: 362 QAEKVMPELVDKGVKADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLARDLRY 421
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L + KG YK +QPVDMFP+T H+E VCL+
Sbjct: 422 L-------DDKG-YKTMEVQPVDMFPYTHHVESVCLI 450
>gi|424714581|ref|YP_007015296.1| Uncharacterized RNA methyltransferase LMOf2365_1727 [Listeria
monocytogenes serotype 4b str. LL195]
gi|424013765|emb|CCO64305.1| Uncharacterized RNA methyltransferase LMOf2365_1727 [Listeria
monocytogenes serotype 4b str. LL195]
Length = 460
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 128/222 (57%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 248 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 308 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + N +PD VI DP R G LIK LL ++A ++VYVSCNP+T ARDL
Sbjct: 366 VGKAEDVLPKWVNEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LL+L
Sbjct: 426 ALLAKK---------YRIRYMQPVDMFPQTAHVETVVLLQLK 458
>gi|417317791|ref|ZP_12104397.1| RNA methyltransferase [Listeria monocytogenes J1-220]
gi|328473948|gb|EGF44764.1| RNA methyltransferase [Listeria monocytogenes J1-220]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 128/222 (57%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 246 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 306 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + N +PD VI DP R G LIK LL ++A ++VYVSCNP+T ARDL
Sbjct: 364 VGKAEDVLPKWVNEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LL+L
Sbjct: 424 ALLAKK---------YRIRYMQPVDMFPQTAHVETVVLLQLK 456
>gi|300915331|ref|ZP_07132645.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
gi|307724834|ref|YP_003904585.1| TrmA family RNA methyltransferase [Thermoanaerobacter sp. X513]
gi|300888607|gb|EFK83755.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
gi|307581895|gb|ADN55294.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X513]
Length = 453
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 131/217 (60%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+NT N +GE+ T+YG NI + ++ + F+IS SFFQ N Q EVLY + A
Sbjct: 243 NINTKRTNVIMGEDNITIYGSDNIIDYIKDIKFEISPLSFFQVNPVQTEVLYGKALEYAD 302
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G E V+D++CG GTI L A+ VYG E V QA+ DA RNA +N I N F+ G
Sbjct: 303 LK--GDETVIDVYCGIGTISLFAAQKAFFVYGIEAVHQAVEDAKRNAYINGIKNVEFISG 360
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
K+ + + K D+VI DP R G + +++ ++ + +IVYVSCNP+T ARDL Y
Sbjct: 361 QAEKVMPELVDKGVKADVVIIDPPRKGCDIPVLEAIVNMNPQKIVYVSCNPSTLARDLRY 420
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L + KG YK +QPVDMFP+T H+E VCL+
Sbjct: 421 L-------DDKG-YKTMEVQPVDMFPYTHHVESVCLI 449
>gi|228931823|ref|ZP_04094719.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228827803|gb|EEM73541.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|228970500|ref|ZP_04131151.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228789232|gb|EEM37160.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
Length = 465
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 131/221 (59%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA+LNN++NA F
Sbjct: 314 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAELNNMTNAEFG 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 464
>gi|228983573|ref|ZP_04143778.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228776169|gb|EEM24530.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLSTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|423620068|ref|ZP_17595899.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD115]
gi|401249993|gb|EJR56298.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD115]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNSKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|196034748|ref|ZP_03102156.1| RNA methyltransferase, TrmA family [Bacillus cereus W]
gi|218901523|ref|YP_002449357.1| TrmA family RNA methyltransferase [Bacillus cereus AH820]
gi|228944128|ref|ZP_04106507.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|195992791|gb|EDX56751.1| RNA methyltransferase, TrmA family [Bacillus cereus W]
gi|218536367|gb|ACK88765.1| RNA methyltransferase, TrmA family [Bacillus cereus AH820]
gi|228815517|gb|EEM61759.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|423556686|ref|ZP_17532989.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus MC67]
gi|401194604|gb|EJR01576.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus MC67]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|229176912|ref|ZP_04304308.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W]
gi|228606585|gb|EEK64010.1| Uncharacterized RNA methyltransferase [Bacillus cereus 172560W]
Length = 454
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 453
>gi|423525926|ref|ZP_17502378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA4-10]
gi|401164959|gb|EJQ72287.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA4-10]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGDETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|196045238|ref|ZP_03112470.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB108]
gi|225862370|ref|YP_002747748.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB102]
gi|376264344|ref|YP_005117056.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
F837/76]
gi|196023822|gb|EDX62497.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB108]
gi|225789520|gb|ACO29737.1| RNA methyltransferase, TrmA family [Bacillus cereus 03BB102]
gi|364510144|gb|AEW53543.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Bacillus cereus
F837/76]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|49480082|ref|YP_034651.1| RNA methyltransferase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|301052046|ref|YP_003790257.1| TrmA family RNA methyltransferase [Bacillus cereus biovar anthracis
str. CI]
gi|423553758|ref|ZP_17530085.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
ISP3191]
gi|49331638|gb|AAT62284.1| RNA methyltransferase protein, trmA family (tRNA
(uracil-5-)-methyltransferase, TrmA) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|300374215|gb|ADK03119.1| RNA methyltransferase protein, trmA family [Bacillus cereus biovar
anthracis str. CI]
gi|401183531|gb|EJQ90647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
ISP3191]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|402554087|ref|YP_006595358.1| RNA methyltransferase, TrmA family protein [Bacillus cereus FRI-35]
gi|401795297|gb|AFQ09156.1| RNA methyltransferase, TrmA family protein [Bacillus cereus FRI-35]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|229068074|ref|ZP_04201382.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185]
gi|228715082|gb|EEL66949.1| Uncharacterized RNA methyltransferase [Bacillus cereus F65185]
Length = 454
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 453
>gi|47569584|ref|ZP_00240262.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241]
gi|47553767|gb|EAL12140.1| RNA methyltransferase, TrmA family [Bacillus cereus G9241]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|340350982|ref|ZP_08673950.1| TrmA family RNA methyltransferase [Prevotella nigrescens ATCC
33563]
gi|339606600|gb|EGQ11567.1| TrmA family RNA methyltransferase [Prevotella nigrescens ATCC
33563]
Length = 479
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 134/219 (61%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + + E T++ G ++ E + L F++ A SF+QTNT QA LY + A
Sbjct: 265 VDNQKGNDTFNDLELTVFKGNDHMFELMENLRFKVGAKSFYQTNTDQAYHLYSIARSFAN 324
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+V DL+ GTGTI +A+ K V G E VP+AI DA N+K+NNI N F G
Sbjct: 325 L--TGNELVYDLYTGTGTIANFVAKKAKKVIGIEYVPEAIEDAKINSKINNIVNTLFYAG 382
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I +F +P+++I+DP R GMH ++ +L RIVYVSCNPAT ARDL
Sbjct: 383 DMKDILTEEFIKQHGRPEVIITDPPRAGMHADVVNVILSAHPQRIVYVSCNPATQARDLA 442
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L D++ YK+ ++QPVDMFPHTPH+E + LLE
Sbjct: 443 LL-----DKD----YKVTAVQPVDMFPHTPHVENIVLLE 472
>gi|52144916|ref|YP_081914.1| RNA methyltransferase [Bacillus cereus E33L]
gi|51978385|gb|AAU19935.1| RNA methyltransferase protein, trmA family (tRNA
(uracil-5-)-methyltransferase) [Bacillus cereus E33L]
Length = 458
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|138893974|ref|YP_001124427.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans
NG80-2]
gi|196250476|ref|ZP_03149167.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16]
gi|134265487|gb|ABO65682.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans
NG80-2]
gi|196209966|gb|EDY04734.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16]
Length = 460
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 126/222 (56%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G + L+G IT+ + + F ISA SF+Q N Q +VLY +
Sbjct: 246 VQNINPERTNVIFGAKTRVLWGSEFITDRIGDIQFAISARSFYQVNPEQTKVLYDKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E V+D +CG GTI L LA+ KHVYG E+VP+AI DA RNA LN I+N TF
Sbjct: 306 AEL--TGTETVIDAYCGIGTISLFLAKKAKHVYGVEIVPEAIEDAKRNAALNGITNVTFA 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + + D ++ DP R G L++ ++ +K PR+VYVSCNPAT ARDL
Sbjct: 364 VGAAEDVIPRWYEEGIRADCLVVDPPRKGCDAALLETIMAMKPPRVVYVSCNPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y+ +QPVDMFPHT H+E V L L
Sbjct: 424 RILE--------DGGYETIEVQPVDMFPHTAHVESVARLALK 457
>gi|429738628|ref|ZP_19272423.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
saccharolytica F0055]
gi|429159551|gb|EKY02054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
saccharolytica F0055]
Length = 473
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/200 (49%), Positives = 119/200 (59%), Gaps = 12/200 (6%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
GK I E + L F++ SF+QTNTHQA LY + D A L G E V DL+ GTGTI
Sbjct: 282 GKDYIYEVMGDLKFKVGPKSFYQTNTHQAYHLYSVARDFAKL--SGIETVYDLYTGTGTI 339
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI-GGDFGNAFPKPDI 140
+AR K V G E VP+AI DA N+ +N+I N F GD+ I DF KPDI
Sbjct: 340 ANFVARSAKKVVGVEYVPEAIEDAKENSVINHIDNTVFYAGDMKDILNADFIAENGKPDI 399
Query: 141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKS 200
+I+DP R GMH +I+ +L RIVYVSCNPAT ARDL L Y++
Sbjct: 400 IITDPPRAGMHADVIETILHADPERIVYVSCNPATQARDLIAL---------DTRYQVTD 450
Query: 201 LQPVDMFPHTPHIECVCLLE 220
+QPVDMFPHTPH+E V LLE
Sbjct: 451 VQPVDMFPHTPHVENVVLLE 470
>gi|228925576|ref|ZP_04088665.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228834054|gb|EEM79602.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 465
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 314 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 464
>gi|423507954|ref|ZP_17484520.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus HD73]
gi|402442380|gb|EJV74309.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus HD73]
Length = 459
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 129/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--SGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKLE 458
>gi|423602170|ref|ZP_17578170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD078]
gi|401226885|gb|EJR33416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD078]
Length = 458
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVTWLKL 457
>gi|228937613|ref|ZP_04100251.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228977069|ref|ZP_04137472.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
Bt407]
gi|452196692|ref|YP_007476773.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|228782686|gb|EEM30861.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
Bt407]
gi|228822094|gb|EEM68084.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|452102085|gb|AGF99024.1| 23S rRNA (Uracil-5-) -methyltransferase RumA [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 454
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 131/221 (59%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA+LNN++NA F
Sbjct: 303 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAELNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 453
>gi|196040233|ref|ZP_03107535.1| RNA methyltransferase, TrmA family [Bacillus cereus NVH0597-99]
gi|196029088|gb|EDX67693.1| RNA methyltransferase, TrmA family [Bacillus cereus NVH0597-99]
Length = 458
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|423485617|ref|ZP_17462299.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BtB2-4]
gi|423491342|ref|ZP_17467986.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
CER057]
gi|423501865|ref|ZP_17478482.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
CER074]
gi|423596622|ref|ZP_17572649.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD048]
gi|423671765|ref|ZP_17646769.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM034]
gi|423677773|ref|ZP_17652708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM062]
gi|401151822|gb|EJQ59264.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
CER074]
gi|401160630|gb|EJQ68006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
CER057]
gi|401219508|gb|EJR26164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD048]
gi|401290806|gb|EJR96491.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM034]
gi|401306243|gb|EJS11752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
VDM062]
gi|402441083|gb|EJV73056.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BtB2-4]
Length = 458
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVTWLKL 457
>gi|340399192|ref|YP_004728217.1| RNA methyltransferase yljE [Streptococcus salivarius CCHSS3]
gi|387761653|ref|YP_006068630.1| 23S rRNA-methyltransferase [Streptococcus salivarius 57.I]
gi|338743185|emb|CCB93693.1| uncharacterized RNA methyltransferase yljE [Streptococcus
salivarius CCHSS3]
gi|339292420|gb|AEJ53767.1| 23S rRNA-methyltransferase [Streptococcus salivarius 57.I]
Length = 456
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 129/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+++ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 300 SDLNSDS--IVIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVEAVSLL 448
>gi|229089447|ref|ZP_04220718.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42]
gi|228693924|gb|EEL47616.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock3-42]
Length = 465
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 314 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 464
>gi|118476081|ref|YP_893232.1| RNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
gi|229182714|ref|ZP_04309955.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1]
gi|118415306|gb|ABK83725.1| 23S rRNA m(5)U-1939 methyltransferase [Bacillus thuringiensis str.
Al Hakam]
gi|228600799|gb|EEK58378.1| Uncharacterized RNA methyltransferase [Bacillus cereus BGSC 6E1]
Length = 465
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 314 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 464
>gi|440735336|ref|ZP_20914943.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|436430705|gb|ELP28063.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus aureus
subsp. aureus DSM 20231]
Length = 453
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/221 (44%), Positives = 125/221 (56%), Gaps = 11/221 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 244 QNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+E+VLD +CG GTIGL +A KHVYG EVVP AI DA +NA +N +N TFV
Sbjct: 304 QLT--GNEVVLDTYCGIGTIGLYMAPLAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + KPD+V+ DP R G I+ LL L+ RIVY+SCN AT RD
Sbjct: 362 GKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNTATQQRDAL 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 422 LLAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|429750782|ref|ZP_19283788.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 332 str. F0381]
gi|429163907|gb|EKY06087.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 332 str. F0381]
Length = 468
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 132/216 (61%), Gaps = 13/216 (6%)
Query: 7 SVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRD 65
S GN ++ ++E Y GK I E + GL F+I+A SF+QTN+ QA LY++ + A L+
Sbjct: 262 SKGNDAIYDQELICYKGKDCIYEEMEGLRFKINAKSFYQTNSKQAYKLYEVARNFADLK- 320
Query: 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL- 124
G E+V DL+ GTGTI +A+ K V G E VP+AI+DA NA N ISN TF GD+
Sbjct: 321 -GDELVYDLYTGTGTIAQFVAKKAKKVVGVEAVPEAIADAKANALANGISNVTFYVGDMK 379
Query: 125 NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184
N DF A PD++I+DP R GMH ++ +L++ +IVYVSCN AT ARDL +
Sbjct: 380 NVFNDDFIAANGTPDVIITDPPRDGMHKDVVAQILQIAPEKIVYVSCNSATQARDLALMD 439
Query: 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+ +QPVDMFP T H+E V LLE
Sbjct: 440 E---------LYKVTKVQPVDMFPQTYHVENVVLLE 466
>gi|325106371|ref|YP_004276025.1| 23S rRNA m(5)U-1939 methyltransferase [Pedobacter saltans DSM
12145]
gi|324975219|gb|ADY54203.1| 23S rRNA m(5)U-1939 methyltransferase [Pedobacter saltans DSM
12145]
Length = 465
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 129/219 (58%), Gaps = 12/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN +T ++ T G I E + GL F++ SF+QTN+ QA LYK+ + AGL
Sbjct: 256 VNQKKNDTIFDQDVITYRGNPFIYEEMEGLKFRVGPKSFYQTNSLQAYELYKITREFAGL 315
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +AR + V G E VP AI DA N+ +NNI N F GD
Sbjct: 316 --SGNELVYDLYTGTGTIANFVARQAREVVGVEYVPSAIEDAKVNSAINNIPNTKFYAGD 373
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + +F KPD+VI+DP R GMH ++ L+ ++A ++VYVSCN AT ARDL
Sbjct: 374 MKDVLSAEFIAEHGKPDVVITDPPRAGMHADVVARLMDMEAEKVVYVSCNAATQARDLAI 433
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L K Y + ++PVDMFPHT H+E V LL+L
Sbjct: 434 L---------KDKYDVARIKPVDMFPHTQHVENVVLLKL 463
>gi|194016025|ref|ZP_03054640.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
7061]
gi|194012380|gb|EDW21947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
7061]
Length = 460
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 127/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N G+E L+G+ I +T+ + F ISA SF+Q N Q +VLY +
Sbjct: 248 VQNVNSKKTNVIFGDETTVLWGEEYIYDTIGDIKFAISARSFYQVNPAQTKVLYDKALEY 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G EIV+D +CG GTI L LA+ VYG E+VP+AI DA RNA LN I+N F
Sbjct: 308 AELQ--GEEIVIDAYCGIGTISLFLAQKAGRVYGVEIVPEAIEDAKRNAALNEINNVEFA 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + ++ K D ++ DP R G L+ +LK+K R+VYVSCNP T ARDL
Sbjct: 366 VGEAETVIPNWYKEGIKADTLVVDPPRKGCDEALLDTILKMKPKRVVYVSCNPGTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y + +QPVDMFPHT H+ECV L
Sbjct: 426 RILE--------DGGYVTEEVQPVDMFPHTAHVECVASL 456
>gi|229148722|ref|ZP_04276972.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550]
gi|228634730|gb|EEK91309.1| Uncharacterized RNA methyltransferase [Bacillus cereus m1550]
Length = 454
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEIQPVDMFPHTTHVECVAWLKL 453
>gi|449087035|ref|YP_007419476.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus thuringiensis
serovar kurstaki str. HD73]
gi|449020792|gb|AGE75955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus thuringiensis
serovar kurstaki str. HD73]
Length = 455
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 129/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--SGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKLE 454
>gi|229165298|ref|ZP_04293085.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621]
gi|228618123|gb|EEK75161.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH621]
Length = 459
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLSL 457
>gi|321314402|ref|YP_004206689.1| putative RNA methyltransferase [Bacillus subtilis BSn5]
gi|320020676|gb|ADV95662.1| putative RNA methyltransferase [Bacillus subtilis BSn5]
Length = 461
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELQ--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ +L++K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGIAADTLVVDPPRKGCDEALLRTILEMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y + +QPVDMFPHT H+ECV +LEL
Sbjct: 425 RVLE--------DGGYVTREVQPVDMFPHTNHVECVVVLEL 457
>gi|340352319|ref|ZP_08675200.1| TrmA family RNA methyltransferase [Prevotella pallens ATCC 700821]
gi|339614499|gb|EGQ19196.1| TrmA family RNA methyltransferase [Prevotella pallens ATCC 700821]
Length = 474
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 135/219 (61%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + + E T++ G +I E + L F++ A SF+QTNT QA LY + + A
Sbjct: 265 VDNQKGNDTFNDLELTVFKGNDHIFELMEDLRFKVGAKSFYQTNTDQAYHLYSVARNFAN 324
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+V DL+ GTGTI +A+ K V G E VP+AI DA N+++N ISN F G
Sbjct: 325 LT--GNELVYDLYTGTGTIANFVAKKAKKVIGIEYVPEAIEDAKINSEINEISNTLFYAG 382
Query: 123 DLNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I + F +PD++I+DP R GMH ++ +L RIVYVSCNPAT ARDL
Sbjct: 383 DMKDILTEAFVKQHGRPDVIITDPPRAGMHADVVNVILGAHPKRIVYVSCNPATQARDLA 442
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L D++ YK+ ++QPVDMFPHTPH+E V LLE
Sbjct: 443 LL-----DRD----YKVVAVQPVDMFPHTPHVENVVLLE 472
>gi|229009816|ref|ZP_04167036.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048]
gi|228751434|gb|EEM01240.1| Uncharacterized RNA methyltransferase [Bacillus mycoides DSM 2048]
Length = 465
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 314 AKL--NGDETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVTWLKL 464
>gi|52079174|ref|YP_077965.1| RNA methyltransferase YefA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|404488041|ref|YP_006712147.1| RumA-like 23S rRNA methyltransferase YefA [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52002385|gb|AAU22327.1| putative RNA methyltransferase YefA [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|52347043|gb|AAU39677.1| putative RumA-like 23S rRNA methyltransferase YefA [Bacillus
licheniformis DSM 13 = ATCC 14580]
Length = 462
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 128/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E ++G+ I +T+ G+ F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPKKTNVIFGDETTVIWGEEYIYDTIGGIKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I NA F
Sbjct: 307 AEL--NGEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGIENAEFE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++++K R+VYVSCNP T ARDL
Sbjct: 365 VGEAEVVIPKWYEEGIAADTLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y + +QPVDMFPHT H+ECV L L
Sbjct: 425 RVLED--------GGYVTREVQPVDMFPHTSHVECVTKLVLK 458
>gi|423422554|ref|ZP_17399585.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3X2-2]
gi|401119058|gb|EJQ26884.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3X2-2]
Length = 458
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--SGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|229159469|ref|ZP_04287487.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803]
gi|228624040|gb|EEK80848.1| Uncharacterized RNA methyltransferase [Bacillus cereus R309803]
Length = 465
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 254 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 314 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 372 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 432 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 464
>gi|417646469|ref|ZP_12296325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU144]
gi|329726919|gb|EGG63377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU144]
Length = 456
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 121/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L +T+ IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEY 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|423415794|ref|ZP_17392914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3O-2]
gi|423428412|ref|ZP_17405416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4O-1]
gi|423644872|ref|ZP_17620488.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD166]
gi|401095529|gb|EJQ03587.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG3O-2]
gi|401125906|gb|EJQ33662.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG4O-1]
gi|401268916|gb|EJR74952.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD166]
Length = 458
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|398309733|ref|ZP_10513207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus mojavensis
RO-H-1]
Length = 459
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELK--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++++K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y+ + +QPVDMFPHT H+ECV LL+L
Sbjct: 425 RVLE--------DGGYQTREVQPVDMFPHTNHVECVTLLKL 457
>gi|424835160|ref|ZP_18259830.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
PA 3679]
gi|365978287|gb|EHN14379.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
PA 3679]
Length = 451
Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 132/217 (60%), Gaps = 13/217 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N ++ + ++ LYG+ I E L GL F+I+ +FFQTN+ AE LY +++D
Sbjct: 243 LHTINDTLSDVVQVDKLEILYGRDYIIEELLGLKFKIAPEAFFQTNSKGAEKLYSIVKDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D S++V DL+CGTGTIG +A K V G E++ +A+ A NAKLN + N F+
Sbjct: 303 LG--DASSKVVFDLYCGTGTIGQIVAPKAKKVIGVELIEEAVKAANENAKLNGLDNCEFI 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K D KPDI+I DP RPG+H +++++K + I+YVSCNP T DL
Sbjct: 361 AGDVAKAIKDLKQ---KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDL 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+YL I YKL+ ++ +DMFPHTPH+E +
Sbjct: 418 EYL--------IDNGYKLEKVKGMDMFPHTPHVETIV 446
>gi|423404971|ref|ZP_17382144.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-2]
gi|423479808|ref|ZP_17456522.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6X1-1]
gi|401645939|gb|EJS63575.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG2X1-2]
gi|402424784|gb|EJV56951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG6X1-1]
Length = 458
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDITTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGIIADTMVVDPPRKGCDDALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|423387199|ref|ZP_17364453.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1X1-2]
gi|401629831|gb|EJS47642.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
BAG1X1-2]
Length = 458
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|228950875|ref|ZP_04112998.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228808804|gb|EEM55300.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 454
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--SGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 453
>gi|423565343|ref|ZP_17541619.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-A1]
gi|434378981|ref|YP_006613625.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis HD-789]
gi|401194353|gb|EJR01338.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
MSX-A1]
gi|401877538|gb|AFQ29705.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis HD-789]
Length = 458
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|423578720|ref|ZP_17554831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD014]
gi|401219887|gb|EJR26535.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD014]
Length = 458
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEF 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|384178260|ref|YP_005564022.1| RNA methyltransferase, TrmA family protein [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|324324344|gb|ADY19604.1| RNA methyltransferase, TrmA family protein [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 459
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 128/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLSL 457
>gi|284036603|ref|YP_003386533.1| TrmA family RNA methyltransferase [Spirosoma linguale DSM 74]
gi|283815896|gb|ADB37734.1| RNA methyltransferase, TrmA family [Spirosoma linguale DSM 74]
Length = 476
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 127/217 (58%), Gaps = 12/217 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+NT ++ +E GK I E + LTF+I SF+QTN QA LYK+ + AGL
Sbjct: 268 LNTKKNDSYQDQEVVNWAGKPYIEEQMEALTFRIGPKSFYQTNAQQAYNLYKVAREFAGL 327
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E V DL+ GTGTI L +AR KHV G E V +++DA NA++N I+N TFV GD
Sbjct: 328 --TGQERVYDLYTGTGTIALFVARLAKHVVGVEYVEASVADARVNAQVNGIANTTFVAGD 385
Query: 124 LNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I D F +PD+VI+DP R GM + + LLK RIVYVSCN AT ARDL
Sbjct: 386 MKAILTDEFFAEHGRPDVVITDPPRAGMDEAVTRQLLKAAPERIVYVSCNTATQARDLAI 445
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y + +QPVDMFPHT H+E V +L
Sbjct: 446 LDEG---------YTVTGVQPVDMFPHTHHVENVVVL 473
>gi|423590143|ref|ZP_17566207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD045]
gi|401220965|gb|EJR27591.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD045]
Length = 458
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|326204866|ref|ZP_08194719.1| RNA methyltransferase, TrmA family [Clostridium papyrosolvens DSM
2782]
gi|325984915|gb|EGD45758.1| RNA methyltransferase, TrmA family [Clostridium papyrosolvens DSM
2782]
Length = 462
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 133/220 (60%), Gaps = 12/220 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVNT N +G++ +YG+ IT+ + F+IS SFFQ N Q EVLY+ + AG
Sbjct: 249 NVNTRNTNIILGDKNICIYGQKYITDYIGSFKFEISPLSFFQVNPIQTEVLYEKALEYAG 308
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E V DL+CG GTI L L++ KHV G EVV AI DA RNA++N +SN F+ G
Sbjct: 309 L--SGNETVFDLYCGIGTISLFLSQKAKHVVGVEVVADAICDAKRNAEINGVSNVEFLVG 366
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K+ + K D+V+ DP R G L+ L++++ RIVYVSCNP+T ARDL Y
Sbjct: 367 EAEKVIPELYAQGVKADVVVVDPPRKGCDQLLLNTLVEMQPQRIVYVSCNPSTLARDLKY 426
Query: 183 LC-HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L HG ++ K +QPVDMFP T H+E + ++L
Sbjct: 427 LTEHG---------FEAKEVQPVDMFPWTGHVESIIWMQL 457
>gi|228963414|ref|ZP_04124575.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228796308|gb|EEM43755.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 455
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKLE 454
>gi|30018572|ref|NP_830203.1| tRNA (Uracil-5-) -methyltransferase [Bacillus cereus ATCC 14579]
gi|296501148|ref|YP_003662848.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171]
gi|50401538|sp|Q814A6.1|Y364_BACCR RecName: Full=Uncharacterized RNA methyltransferase BC_0364
gi|29894113|gb|AAP07404.1| tRNA (Uracil-5-) -methyltransferase [Bacillus cereus ATCC 14579]
gi|296322200|gb|ADH05128.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis BMB171]
Length = 458
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|218233353|ref|YP_002365162.1| TrmA family RNA methyltransferase [Bacillus cereus B4264]
gi|218161310|gb|ACK61302.1| RNA methyltransferase, TrmA family [Bacillus cereus B4264]
Length = 454
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 453
>gi|441471438|emb|CCQ21193.1| Uncharacterized RNA methyltransferase lmo1703 [Listeria
monocytogenes]
Length = 265
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 127/222 (57%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 53 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 112
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 113 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 170
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + +PD VI DP R G LIK LL ++A ++VYVSCNP+T ARDL
Sbjct: 171 VGKAEDVLPKWVKEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDL 230
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LL+L
Sbjct: 231 ALLAKK---------YRIRYMQPVDMFPQTAHVETVVLLQLK 263
>gi|423646444|ref|ZP_17622014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD169]
gi|423653265|ref|ZP_17628564.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD200]
gi|401287377|gb|EJR93173.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD169]
gi|401301981|gb|EJS07566.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD200]
Length = 458
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|423613778|ref|ZP_17589637.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD107]
gi|401240847|gb|EJR47245.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD107]
Length = 458
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDTTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|194466906|ref|ZP_03072893.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
gi|194453942|gb|EDX42839.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri 100-23]
Length = 456
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 127/222 (57%), Gaps = 9/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++ TL+G I + L G+ F IS SF+Q N Q E LY+ D
Sbjct: 244 VQNINDKRTNRLLGDKNKTLWGADEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIDN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL DG++ V+D +CG GTI L +A+ K VYG E+VP AI DA NAK N I NA FV
Sbjct: 304 AGL--DGNQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD+VI DP R G+ LI+ K+ +++YVSCNPAT RD+
Sbjct: 362 VGKAEEQFAKWQAEGLKPDVVIVDPPRKGLAESLIEATGKMDPKKVIYVSCNPATLVRDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
DQ G + K +QPVD FP T H+E V +LE +
Sbjct: 422 KRFA----DQ---GYHVTKPIQPVDQFPQTTHVESVTVLERA 456
>gi|308180110|ref|YP_003924238.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|418274693|ref|ZP_12890191.1| 23S rRNA methyltransferase, TrmA family [Lactobacillus plantarum
subsp. plantarum NC8]
gi|308045601|gb|ADN98144.1| RNA methyltransferase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|376010259|gb|EHS83585.1| 23S rRNA methyltransferase, TrmA family [Lactobacillus plantarum
subsp. plantarum NC8]
Length = 457
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 124/220 (56%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +G L GK+ I + L GLTF ISA SF+Q N Q E LY+L D
Sbjct: 244 IQNVNSKKTNVILGPVNNVLAGKATIDDQLLGLTFAISAQSFYQVNPQQTEKLYQLAIDQ 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G+E V+D + G GTI LT+A+ K VYG E+VP AI +A +NA N I+NATFV
Sbjct: 304 AGLT--GNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNATFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ R+VY+SCNP+T RD
Sbjct: 362 LDSAEKAMAKWQADGVKPDVIVVDPPRKGLDADFIKSAGEMAPKRVVYISCNPSTLVRDA 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G + +QPVD FP TPHIE V +LE
Sbjct: 422 QRFAE-------YGYHISAPVQPVDQFPQTPHIESVTVLE 454
>gi|334146908|ref|YP_004509837.1| RNA methyltransferase [Porphyromonas gingivalis TDC60]
gi|333804064|dbj|BAK25271.1| RNA methyltransferase [Porphyromonas gingivalis TDC60]
Length = 478
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 125/212 (58%), Gaps = 11/212 (5%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N ++G++E LY G+ I E + GL F+I A SF+QTN+ QA LY++ + AGL G
Sbjct: 271 NDTIGDQEVLLYHGREYIEEEMEGLKFKIGAKSFYQTNSRQAYQLYRIAREFAGL--TGD 328
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI- 127
E+V DL+ GTGTI +A V G E VP+AI DA N+ LN I N F GD+ I
Sbjct: 329 ELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGIENTLFYAGDMKDIL 388
Query: 128 GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 187
DF +PD+VI+DP R GMH +I +L RIVYVSCNPAT ARDL L
Sbjct: 389 TNDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPKRIVYVSCNPATQARDLALLM--- 445
Query: 188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
G Y+ +PVDMFPHT H+E V LL
Sbjct: 446 ----ADGRYRAVKSRPVDMFPHTHHVENVVLL 473
>gi|340621387|ref|YP_004739838.1| RNA methyltransferase [Capnocytophaga canimorsus Cc5]
gi|339901652|gb|AEK22731.1| Uncharacterized RNA methyltransferase [Capnocytophaga canimorsus
Cc5]
Length = 469
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 132/217 (60%), Gaps = 19/217 (8%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
N S+ ++E Y G+ I E + GL F+I+A SF+QTN+ QA LYK+ D A L G
Sbjct: 265 ANDSIYDQEIICYKGRDYIYEEMEGLRFKINAKSFYQTNSEQAYELYKVARDFAQL--TG 322
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
+E+V DL+ GTGTI +A+ + V G E VP+AI DA NA+ NNI+N +F GD+ +
Sbjct: 323 NELVYDLYTGTGTIAQFVAKKARKVVGVEAVPEAIEDAKVNAQNNNITNVSFFVGDMKNV 382
Query: 128 GGDFGNAFPK----PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYL 183
F AF PD++I+DP R GMH +++ +L + P++VYVSCN AT ARDL +
Sbjct: 383 ---FNEAFIAENGVPDLIITDPPRDGMHKDVVQQILNIAPPKVVYVSCNSATQARDLALM 439
Query: 184 CHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+ +QPVDMFP T H+E V LLE
Sbjct: 440 ---------DAMYKVTKVQPVDMFPQTHHVENVVLLE 467
>gi|188995054|ref|YP_001929306.1| RNA methyltransferase [Porphyromonas gingivalis ATCC 33277]
gi|188594734|dbj|BAG33709.1| RNA methyltransferase [Porphyromonas gingivalis ATCC 33277]
Length = 478
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 125/212 (58%), Gaps = 11/212 (5%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N ++G++E LY G+ I E + GL F+I A SF+QTN+ QA LY++ + AGL G
Sbjct: 271 NDTIGDQEVLLYHGREYIEEEMEGLKFKIGAKSFYQTNSRQAYQLYRIAREFAGL--TGD 328
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI- 127
E+V DL+ GTGTI +A V G E VP+AI DA N+ LN I N F GD+ I
Sbjct: 329 ELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGIENTLFYAGDMKDIL 388
Query: 128 GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 187
DF +PD+VI+DP R GMH +I +L RIVYVSCNPAT ARDL L
Sbjct: 389 TNDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPKRIVYVSCNPATQARDLALLM--- 445
Query: 188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
G Y+ +PVDMFPHT H+E V LL
Sbjct: 446 ----ADGRYRAVKSRPVDMFPHTHHVENVVLL 473
>gi|229125816|ref|ZP_04254842.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4]
gi|229143116|ref|ZP_04271549.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24]
gi|228640389|gb|EEK96786.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-ST24]
gi|228657673|gb|EEL13485.1| Uncharacterized RNA methyltransferase [Bacillus cereus BDRD-Cer4]
Length = 454
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 453
>gi|387927857|ref|ZP_10130536.1| RNA methyltransferase, TrmA family protein [Bacillus methanolicus
PB1]
gi|387590001|gb|EIJ82321.1| RNA methyltransferase, TrmA family protein [Bacillus methanolicus
PB1]
Length = 456
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++NVN N +GE+ L+G I + + + F ISA SF+Q N Q +VLY +
Sbjct: 245 VHNVNPKRTNVILGEKTTVLWGNEVIYDYIGNVKFAISALSFYQVNPDQTKVLYDKALEY 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E V+D +CG GTI L LA+ K V+G EVVP+AI DA RNAKLN I+NA F
Sbjct: 305 AGL--TGEETVIDAYCGIGTISLFLAQKAKKVFGVEVVPEAIEDAKRNAKLNGITNAEFA 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + + D+++ DP R G L+K ++ +K ++VYVSCNPAT ARDL
Sbjct: 363 VGEAEIVIPKWYKEGNRADVLVVDPPRKGCDEALLKTIIDMKPKKVVYVSCNPATLARDL 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G YK +QPVDMFP T H+EC LL+L
Sbjct: 423 RILED--------GGYKTVEVQPVDMFPQTTHVECCALLKL 455
>gi|228906093|ref|ZP_04069982.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
200]
gi|229042217|ref|ZP_04189971.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676]
gi|228727152|gb|EEL78355.1| Uncharacterized RNA methyltransferase [Bacillus cereus AH676]
gi|228853502|gb|EEM98270.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
200]
Length = 454
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 453
>gi|229077678|ref|ZP_04210308.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2]
gi|228705619|gb|EEL57975.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock4-2]
Length = 454
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 453
>gi|168186646|ref|ZP_02621281.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Eklund]
gi|169295463|gb|EDS77596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Eklund]
Length = 450
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N S+ + + L+G+ I E + GL F+IS SFFQTNT AE LY ++ +
Sbjct: 243 LHTINDSLSDVVQADSMKVLFGRDYIMEEVLGLKFKISPFSFFQTNTKGAEALYSIVREF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D S++V DL+CGTGTIG A + V G E++ +A+ A NAKLN ++N F+
Sbjct: 303 MG--DAKSKVVFDLYCGTGTIGQIAAHNAEKVIGIELIEEAVKAANENAKLNGLTNCEFL 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ D KPDI+I DP RPG+H +K++ K A I+YVSCNP T DL
Sbjct: 361 AGDVAKVIKDIK---VKPDIIILDPPRPGVHPDALKYVTKFNAKDIIYVSCNPKTLVEDL 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
YL IK YK++ ++ DMFPHTPH+E L
Sbjct: 418 KYL--------IKEGYKVEKVKVKDMFPHTPHVESAVKL 448
>gi|315303628|ref|ZP_07874164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
F6-596]
gi|313628001|gb|EFR96598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
F6-596]
Length = 453
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G TL+GK I +++ G+ F ISA SF+Q N Q EVLY+ +
Sbjct: 242 VQNINPQKTNVIFGNRTKTLWGKDIIEDSIHGIRFAISARSFYQVNPLQTEVLYQQALEA 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG G+I L LA+ KHVYG E+V QAI DA NA LN ++N TF
Sbjct: 302 AEL--TGEETVIDAYCGIGSISLCLAKKAKHVYGVEIVDQAIQDARANAALNELNNTTFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + A D+++ DP R G KL++ +L +K ++VYVSCNP T ARD+
Sbjct: 360 TGKAEEVIPAWYKAGIIADVLVVDPPRKGCDEKLLQTILAMKPKKVVYVSCNPGTLARDM 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+ K +QPVDMFP T HIE V +L
Sbjct: 420 QILT--------EGGYEAKQVQPVDMFPMTTHIEAVTVL 450
>gi|441474573|emb|CCQ24327.1| Uncharacterized RNA methyltransferase lmo1703 [Listeria
monocytogenes N53-1]
Length = 250
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 127/222 (57%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 38 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 97
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 98 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 155
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + +PD VI DP R G LIK LL ++A ++VYVSCNP+T ARDL
Sbjct: 156 VGKAEDVLPKWVKEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDL 215
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LL+L
Sbjct: 216 ALLAKK---------YRIRYMQPVDMFPQTAHVETVVLLQLK 248
>gi|319647052|ref|ZP_08001278.1| YefA protein [Bacillus sp. BT1B_CT2]
gi|317390876|gb|EFV71677.1| YefA protein [Bacillus sp. BT1B_CT2]
Length = 458
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 127/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E ++G+ I +T+ G+ F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPKKTNVIFGDETTVIWGEEYIYDTIGGIKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I NA F
Sbjct: 307 AEL--NGEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGIENAEFE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++++K R+VYVSCNP T ARDL
Sbjct: 365 VGEAEVVIPKWYEEGIAADTLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y + +QPVDMFPHT H+EC LL
Sbjct: 425 RVLED--------GGYVTREVQPVDMFPHTAHVECCVLL 455
>gi|229107991|ref|ZP_04237618.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15]
gi|228675494|gb|EEL30711.1| Uncharacterized RNA methyltransferase [Bacillus cereus Rock1-15]
Length = 454
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 453
>gi|423632237|ref|ZP_17607983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD154]
gi|401261562|gb|EJR67721.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD154]
Length = 459
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 129/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G YK + +QPVDMFPHT H+ECV L L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLSLE 458
>gi|206967682|ref|ZP_03228638.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134]
gi|206736602|gb|EDZ53749.1| RNA methyltransferase, TrmA family [Bacillus cereus AH1134]
Length = 454
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIHDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 453
>gi|218895441|ref|YP_002443852.1| TrmA family RNA methyltransferase [Bacillus cereus G9842]
gi|228899050|ref|ZP_04063323.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
4222]
gi|218544636|gb|ACK97030.1| RNA methyltransferase, TrmA family [Bacillus cereus G9842]
gi|228860625|gb|EEN05012.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis IBL
4222]
Length = 454
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 453
>gi|358051234|ref|ZP_09145451.1| RNA methyltransferase [Staphylococcus simiae CCM 7213]
gi|357259274|gb|EHJ09114.1| RNA methyltransferase [Staphylococcus simiae CCM 7213]
Length = 453
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 121/219 (55%), Gaps = 11/219 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S N +G TLYG+ I + L TF+IS SF+Q N+ Q E LY A
Sbjct: 245 NINDSHSNVIMGNHSITLYGQDTIEDQLSDSTFEISDQSFYQINSEQTEKLYNQAISYAQ 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E VLD +CG GTIGL +A + KHVYG EVVP AI DA NA LN N TFV G
Sbjct: 305 LT--GNETVLDTYCGIGTIGLYMAPYAKHVYGVEVVPSAIKDAQYNATLNQCENTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + KPD+V+ DP R G I LL+L RIVY+SCNP+T RD
Sbjct: 363 KAEEVILQWKTQGIKPDVVMVDPPRKGCDETFINTLLELAPKRIVYISCNPSTQQRDALM 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L Y+L + PVDMFPHT H+E V +L
Sbjct: 423 LADK---------YQLTEITPVDMFPHTTHVETVAQFDL 452
>gi|395800669|ref|ZP_10479941.1| RNA methyltransferase [Flavobacterium sp. F52]
gi|395437077|gb|EJG02999.1| RNA methyltransferase [Flavobacterium sp. F52]
Length = 470
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 135/217 (62%), Gaps = 19/217 (8%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N ++ +++ LY G+ I E + GL F I+A SF+QTN+ QA LYK+ D AGL G+
Sbjct: 267 NDTIYDQDVILYKGRDYILEEMEGLKFSINAKSFYQTNSDQAYELYKITRDFAGL--TGN 324
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
E V DL+ GTGTI +++ K V G E VP+AI DA NA+ NNI+N F GD+ +
Sbjct: 325 ETVYDLYTGTGTIAQFVSKKAKKVIGVESVPEAIIDAKANAERNNITNCEFFVGDMKVV- 383
Query: 129 GDFGNAF----PKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184
F AF KPD++I+DP R GMH +++ +LK+ R+VYVSCN AT ARDL
Sbjct: 384 --FNEAFIAQHGKPDVIITDPPRDGMHKDVVEQILKIAPKRVVYVSCNSATQARDL---- 437
Query: 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
+ D+ YK+ ++PVDMFP T H+E V LLEL
Sbjct: 438 -ALMDEK----YKVTRVRPVDMFPQTHHVENVVLLEL 469
>gi|228919254|ref|ZP_04082624.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228840361|gb|EEM85632.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 454
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNATLNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 453
>gi|42779444|ref|NP_976691.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
gi|51316698|sp|Q73EJ5.1|Y363_BACC1 RecName: Full=Uncharacterized RNA methyltransferase BCE_0363
gi|42735360|gb|AAS39299.1| RNA methyltransferase, TrmA family [Bacillus cereus ATCC 10987]
Length = 460
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YK + +QPVDMFPHT H+ECV L+
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVVLM 455
>gi|431795575|ref|YP_007222479.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Echinicola
vietnamensis DSM 17526]
gi|430786340|gb|AGA76469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Echinicola
vietnamensis DSM 17526]
Length = 467
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 130/220 (59%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N T +E +T G+ I E + GL F+I SF+QTN+ QA LYK+ + A L
Sbjct: 259 INLKKNETFHDQEIHTFMGRDYIIEEMEGLQFRIGPKSFYQTNSKQAYELYKVAREFASL 318
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
+ G+E+V DL+ GTGTI +A+ K V G E V +AI DA NAK N + N F GD
Sbjct: 319 Q--GNEVVYDLYTGTGTIANFIAKKAKQVIGIEYVEEAIEDAKLNAKENGLENTQFYAGD 376
Query: 124 LNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + D F PD++I+DP R GMH ++ LLKL AP+IVY+SCNPAT ARD+
Sbjct: 377 MKDMLTDEFIADHAAPDVIITDPPRAGMHEDVVNMLLKLAAPKIVYISCNPATQARDIAL 436
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G++ Y + +QPVDMFP T H+E V LL L
Sbjct: 437 L----GEK-----YSVDIVQPVDMFPQTYHVENVVLLTLK 467
>gi|229188589|ref|ZP_04315628.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876]
gi|228594778|gb|EEK52558.1| Uncharacterized RNA methyltransferase [Bacillus cereus ATCC 10876]
Length = 454
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 453
>gi|403389595|ref|ZP_10931652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. JC122]
Length = 451
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 129/219 (58%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N S+ + +E LYGK I E L GL F+I+ +FFQTNT AE LY ++ D
Sbjct: 244 IHTLNDSLSDVVQADEIKVLYGKDYIVEDLLGLKFKINPFAFFQTNTKGAEKLYSMVRDF 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D ++IV DL+CGTGTIG +A K V G E++ +A+ A NAKLNN+ N F+
Sbjct: 304 MG--DSENKIVFDLYCGTGTIGQIVAPKAKKVLGIELIEEAVDAAKENAKLNNLDNCEFI 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ D KPDI+I DP R G+H + +++K A I+YVSCNP + DL
Sbjct: 362 AGDVAKVIKDVK---IKPDIIILDPPRAGVHPIALDYVIKFDAKEIIYVSCNPKSLVTDL 418
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L + YK+ ++ DMFPHTPH+E VC L
Sbjct: 419 QVLTN--------AGYKIDKIKLKDMFPHTPHVETVCRL 449
>gi|357638879|ref|ZP_09136752.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus urinalis
2285-97]
gi|418417565|ref|ZP_12990760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus urinalis
FB127-CNA-2]
gi|357587333|gb|EHJ56741.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus urinalis
2285-97]
gi|410871484|gb|EKS19432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus urinalis
FB127-CNA-2]
Length = 544
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 130/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYGK IT+++ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKKTNAIFGQEFKTLYGKDTITDSMLGNNYIISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L ++ +IV+D + G GTIGL+ A+ VK VYG EV+ A+ DA NAK N ISNA +
Sbjct: 300 SDLNEN--DIVIDAYSGIGTIGLSFAKKVKAVYGVEVIETAVKDARENAKQNAISNAFYT 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KP +++ DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 VGTAEEAMAQWSKVGIKPSVILVDPPRKGLTESFIKASVAMEPQKITYVSCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E VCLL
Sbjct: 418 A-LYQTLG-------YQLKKVQPVDLFPQTHHVETVCLL 448
>gi|406658700|ref|ZP_11066840.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus iniae 9117]
gi|405578915|gb|EKB53029.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus iniae 9117]
Length = 452
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 127/220 (57%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N GN G+E LYGK +IT+T+ G +F ISA SF+Q NT AE LY+ D
Sbjct: 239 IQNINDQNGNAIFGKEFRLLYGKDSITDTMLGNSFDISAQSFYQVNTLMAEKLYQTAIDF 298
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D +IV+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA N I N +FV
Sbjct: 299 SDLTKD--DIVIDAYSGIGTIGLSFAKQVKKVYGVEVIESAVKDAEKNASKNGIKNVSFV 356
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KP +++ DP R G+ IK + + +I YVSCNPAT ARD+
Sbjct: 357 TDSAEAAMEKWSKEGLKPTVILVDPPRKGLTESFIKASVAMAPEKITYVSCNPATMARDI 416
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + YKL +QPVD+FP T H+ECV LL+
Sbjct: 417 --------KQYQELGYKLTKVQPVDLFPQTHHVECVVLLQ 448
>gi|365926276|ref|ZP_09449039.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|420265515|ref|ZP_14768069.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|394427920|gb|EJF00536.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus mali KCTC 3596 =
DSM 20444]
Length = 458
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 126/219 (57%), Gaps = 9/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G+ E L G +IT++L G+ F+ISA+SF+Q N+ Q E +Y+ + +
Sbjct: 243 VQNINQEKTNVILGKTEKILAGDGHITDSLNGINFEISAHSFYQVNSVQTEKIYQKVVEA 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ VYG E+VP+AI DA +NA NNI NA F
Sbjct: 303 AEL--TGKETVIDAYCGIGTISLNLAQKAAKVYGVEIVPEAIDDAKKNATANNIDNAIFE 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD+V+ DP R G+ ++I KL +IVYVSCNPAT RD+
Sbjct: 361 VGTASDWMAKWSEEGIKPDVVVFDPPRKGLESEVINSTAKLAPAKIVYVSCNPATLVRDI 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
KG K +QPVD FP T HIE + +L
Sbjct: 421 QLFTE-------KGYQVAKPIQPVDQFPMTTHIESITVL 452
>gi|433443315|ref|ZP_20408751.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anoxybacillus
flavithermus TNO-09.006]
gi|432002160|gb|ELK23016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anoxybacillus
flavithermus TNO-09.006]
Length = 454
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G+E L+G I + + + F ISA SF+Q N Q +VLY+ +
Sbjct: 243 IQNINPKRTNVIMGDETKVLWGAEYIYDYIGDIQFAISARSFYQVNPEQTKVLYEKALEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ K VYG EVVP+AI DA RNAKLN I NA F
Sbjct: 303 AEL--TGEETVIDAYCGIGTISLFLAKKAKKVYGVEVVPEAIEDAKRNAKLNGIDNAEFA 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + + D ++ DP R G L++ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYEQGIEADCIVVDPPRKGCDESLLQTIIAMKPKRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G YK +QPVDMFPHT H+EC LL
Sbjct: 421 RILE--------DGGYKTLEVQPVDMFPHTNHVECCALL 451
>gi|392329520|ref|ZP_10274136.1| tRNA (uracil-5-)-methyltransferase [Streptococcus canis FSL Z3-227]
gi|391419392|gb|EIQ82203.1| tRNA (uracil-5-)-methyltransferase [Streptococcus canis FSL Z3-227]
Length = 453
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 131/223 (58%), Gaps = 12/223 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+T+ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNTNAIFGKEFRTLYGRDTITDTMLGNRYEISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LN I+NA FV
Sbjct: 300 SELSKD--DVVIDAYSGIGTIGLSFAKTVKAVYGVEVIEAAVQDAQKNAALNGITNAHFV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD+++ DP R G+ I+ + + +I YVSCNPAT ARD+
Sbjct: 358 ADTAENAMATWAKDGIKPDLILVDPPRKGLTESFIQASVAMAPNKITYVSCNPATMARDI 417
Query: 181 D-YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
Y G Y+LK +QPVD+FP T H+ECV LL+ S
Sbjct: 418 KRYEELG---------YQLKKVQPVDLFPQTHHVECVVLLQRS 451
>gi|419969966|ref|ZP_14485485.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas
gingivalis W50]
gi|392611905|gb|EIW94627.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas
gingivalis W50]
Length = 478
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 125/212 (58%), Gaps = 11/212 (5%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N ++G++E LY G+ I E + GL F+I A SF+QTN+ QA LY++ + AGL G
Sbjct: 271 NDTIGDQEVLLYHGREYIEEEMEGLKFKIGAKSFYQTNSRQAYQLYRIAREFAGL--TGD 328
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI- 127
E+V DL+ GTGTI +A V G E VP+AI DA N+ LN I N F GD+ I
Sbjct: 329 ELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGIENTLFYAGDMKDIL 388
Query: 128 GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 187
DF +PD+VI+DP R GMH +I +L RIVYVSCNPAT ARDL L
Sbjct: 389 TNDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPRRIVYVSCNPATQARDLALLM--- 445
Query: 188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
G Y+ +PVDMFPHT H+E V LL
Sbjct: 446 ----ADGRYRAVKSRPVDMFPHTHHVENVVLL 473
>gi|228956753|ref|ZP_04118539.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228802941|gb|EEM49773.1| Uncharacterized RNA methyltransferase [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 455
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 129/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G YK + +QPVDMFPHT H+ECV L L
Sbjct: 421 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLSLE 454
>gi|427713489|ref|YP_007062113.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC
6312]
gi|427377618|gb|AFY61570.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC
6312]
Length = 459
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 125/218 (57%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N+ GN G E + G+++I E GL F I+A SFFQ NT QAEVL ++I+
Sbjct: 251 NYNSQPGNQIFGPETELITGQASIWEQFAGLEFVINATSFFQVNTEQAEVLVEMIKRELN 310
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L +E +LD FCG GT+ L LA + V G E+ P ++ A NA++N I+NA F+ G
Sbjct: 311 LSQ--TETILDAFCGVGTLSLPLATQARAVVGVEISPATVAQAQINAQINQITNAEFIVG 368
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
D+ A PDI++ DP R G + + L L APRIVYVSCNPAT ARDLD
Sbjct: 369 DMATW---IPAADLHPDIILLDPPRKGCDPQTLACLETLAAPRIVYVSCNPATLARDLDQ 425
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
LCH +G Y+L QP+D FP T H+E V L
Sbjct: 426 LCH-------QGAYELTKTQPLDFFPQTAHVETVAFLR 456
>gi|169825840|ref|YP_001695998.1| RNA methyltransferase [Lysinibacillus sphaericus C3-41]
gi|168990328|gb|ACA37868.1| Hypothetical RNA methyltransferase [Lysinibacillus sphaericus
C3-41]
Length = 459
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 128/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN N G++ L+GK I +T+ + F+ISA SF+Q N Q EVLYK D
Sbjct: 248 MQNVNHEKTNVIFGDDTLNLWGKDVIIDTIGDVRFEISARSFYQVNPEQTEVLYKQALDY 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ + V G E+VPQAI DA RNA LN +N F
Sbjct: 308 ANLQ--GDERVIDAYCGIGTISLFLAQKARAVMGVEIVPQAIEDAKRNAVLNGFTNTYFE 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + + D+++ DP R G L+ +L+ + R+VYVSCNPAT ARDL
Sbjct: 366 AGPAEEVIPRWYKEGKEADVLVVDPPRKGCDEALLTTILEQRPKRVVYVSCNPATLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L + G Y+ + +QPVDMFPH+ H E V LEL
Sbjct: 426 RILEN--------GGYQTQEIQPVDMFPHSTHCEAVAWLEL 458
>gi|163789372|ref|ZP_02183811.1| RNA methyltransferase, TrmA family protein [Carnobacterium sp. AT7]
gi|159875226|gb|EDP69291.1| RNA methyltransferase, TrmA family protein [Carnobacterium sp. AT7]
Length = 458
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N +G++ LYG+ +TL G TF+IS SF+Q N Q E LY+ + D
Sbjct: 247 VQNVNPKHTNVIMGDDAIVLYGEDKYKDTLLGNTFEISHRSFYQVNPQQTEKLYQTVLDF 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D + G GTI LTLA+ KHVYG E++ A+ +A NA+LNNI N TF
Sbjct: 307 AEL--TGEETVIDAYSGIGTIALTLAKNAKHVYGIEIIEPAVVNAKANAELNNIENVTFE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + D+++ DP R G+ + + ++ +K ++VYVSCNPAT ARDL
Sbjct: 365 AGAAEEVMVQWSEEGRTADLLVVDPPRKGLEKEFTEAVIAMKPTKMVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y +K +QPVD+FP T H+E V LL
Sbjct: 425 ALLT--------EGGYTVKKVQPVDLFPQTTHVESVALL 455
>gi|34540828|ref|NP_905307.1| RNA methyltransferase [Porphyromonas gingivalis W83]
gi|50401491|sp|Q7MVG9.1|Y1095_PORGI RecName: Full=Uncharacterized RNA methyltransferase PG_1095
gi|34397142|gb|AAQ66206.1| RNA methyltransferase, TrmA family [Porphyromonas gingivalis W83]
Length = 465
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 125/212 (58%), Gaps = 11/212 (5%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N ++G++E LY G+ I E + GL F+I A SF+QTN+ QA LY++ + AGL G
Sbjct: 258 NDTIGDQEVLLYHGREYIEEEMEGLKFKIGAKSFYQTNSRQAYQLYRIAREFAGL--TGD 315
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI- 127
E+V DL+ GTGTI +A V G E VP+AI DA N+ LN I N F GD+ I
Sbjct: 316 ELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGIENTLFYAGDMKDIL 375
Query: 128 GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 187
DF +PD+VI+DP R GMH +I +L RIVYVSCNPAT ARDL L
Sbjct: 376 TNDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPRRIVYVSCNPATQARDLALLM--- 432
Query: 188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
G Y+ +PVDMFPHT H+E V LL
Sbjct: 433 ----ADGRYRAVKSRPVDMFPHTHHVENVVLL 460
>gi|423334719|ref|ZP_17312497.1| RNA methyltransferase [Lactobacillus reuteri ATCC 53608]
gi|337728240|emb|CCC03335.1| RNA methyltransferase [Lactobacillus reuteri ATCC 53608]
Length = 456
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 126/220 (57%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++ TL+G I + L G+ F IS SF+Q N Q E LY+ D
Sbjct: 244 VQNINDKRTNRLLGDKNKTLWGADEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIDN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL DG++ V+D +CG GTI L +A+ K VYG E+VP AI DA NAK N I NA FV
Sbjct: 304 AGL--DGNQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD+VI DP R G+ LI+ K+ +++YVSCNPAT RD+
Sbjct: 362 VGKAEEQFAKWQAEGLKPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSCNPATLVRDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
DQ G + K +QPVD FP T H+E V +LE
Sbjct: 422 KRFA----DQ---GYHVTKPIQPVDQFPQTTHVESVTVLE 454
>gi|374597316|ref|ZP_09670320.1| 23S rRNA m(5)U-1939 methyltransferase [Gillisia limnaea DSM 15749]
gi|373871955|gb|EHQ03953.1| 23S rRNA m(5)U-1939 methyltransferase [Gillisia limnaea DSM 15749]
Length = 490
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 133/222 (59%), Gaps = 13/222 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIED 59
+ V S GN ++ ++E Y G+ +I E + GL F+I+A SF+QTN+ QA LYK+ D
Sbjct: 278 LQYVINSKGNDTIYDQEVICYKGRDHIFEEMEGLKFKINAKSFYQTNSEQAYQLYKITRD 337
Query: 60 CAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATF 119
A L G+E+V DL+ GTGTI +A+ K V G E VP AI DA NAK NNI N F
Sbjct: 338 FAQL--TGNELVYDLYTGTGTIAQFVAKHAKKVIGIEAVPVAIEDARENAKRNNIENTEF 395
Query: 120 VQGDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR 178
GD+ K+ F PD++I+DP R GMH +I ++ + RIVYVSCN AT AR
Sbjct: 396 YAGDMKKVFTAGFIKKHGHPDVIITDPPRDGMHKDVIAQIIGILPQRIVYVSCNSATQAR 455
Query: 179 DLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
DL L D++ YK+ +QPVDMFP T H+E V LE
Sbjct: 456 DLALL-----DEH----YKVTRVQPVDMFPQTFHVENVVCLE 488
>gi|311033023|ref|ZP_07711113.1| YefA [Bacillus sp. m3-13]
Length = 455
Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 128/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+E L+G I + + + F ISA SF+Q N Q +VLY +
Sbjct: 244 VQNVNTKKTNVIFGDETRVLWGNEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKALEY 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ K V+G E+VP+AI DA RNA+LN I+NA F
Sbjct: 304 AEL--TGEESVIDAYCGIGTISLFLAQKAKKVFGVEIVPEAIEDAKRNAELNEITNAEFA 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D+++ DP R G L+K +L++K ++VYVSCNPAT ARDL
Sbjct: 362 VGEAEVVIPKWYKEGNTADVLVVDPPRKGCDESLLKTILEMKPKKVVYVSCNPATLARDL 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G YK +QPVDMFPHT H+ECV L L
Sbjct: 422 RVLE--------DGGYKTVEVQPVDMFPHTVHVECVSHLVLK 455
>gi|170760987|ref|YP_001788698.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A3 str. Loch Maree]
gi|169407976|gb|ACA56387.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A3 str. Loch Maree]
Length = 461
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 129/220 (58%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N +GE+ TL+GK IT+ + F IS SFFQ N Q EVLYK +
Sbjct: 248 VQNVNTKKTNVILGEKCITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G EIV D +CGTGTI L L++ K VYG E++ +AI +A NAK N I NA F
Sbjct: 308 ANLK--GEEIVFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFF 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ D N K D+V+ DP R G L++ + + RIVYVSC+P T ARDL
Sbjct: 366 VGKSEEVIPDLINKGIKADVVVVDPPRKGCEKSLLEAIAATRPKRIVYVSCDPGTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G+G Y+ K +QPVDMFP T H+E LL+
Sbjct: 426 GIL-NGLG-------YETKEVQPVDMFPQTSHVETCVLLQ 457
>gi|451347978|ref|YP_007446609.1| TrmA family RNA methyltransferase [Bacillus amyloliquefaciens
IT-45]
gi|449851736|gb|AGF28728.1| TrmA family RNA methyltransferase [Bacillus amyloliquefaciens
IT-45]
Length = 461
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G+E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGDETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELQ--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++ +K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIIDMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y+ +QPVDMFPHT H+ECV +LEL
Sbjct: 425 RVLE--------DGGYQTLEVQPVDMFPHTNHVECVAVLEL 457
>gi|422409947|ref|ZP_16486908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
FSL F2-208]
gi|313608342|gb|EFR84315.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
FSL F2-208]
Length = 459
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 128/222 (57%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + +PD VI DP R G LIK LL+++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVKEGFRPDAVIVDPPRSGCDQGLIKSLLEVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LL+L
Sbjct: 425 ALLAKK---------YRIRYMQPVDMFPQTAHVETVVLLQLK 457
>gi|383449948|ref|YP_005356669.1| tRNA (uracil-5-)-methyltransferase [Flavobacterium indicum
GPTSA100-9]
gi|380501570|emb|CCG52612.1| tRNA (uracil-5-)-methyltransferase [Flavobacterium indicum
GPTSA100-9]
Length = 470
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 130/218 (59%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N + +T ++ G+ I E + GL F I+A SF+QTN+ QA LY + D AGL
Sbjct: 262 INQKLNDTLYDQDIILFKGRDYILEEMEGLHFSINAKSFYQTNSEQAYELYSITRDFAGL 321
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI +++ K V G E VP+AI+DA NAK NNI+N F GD
Sbjct: 322 T--GEELVYDLYTGTGTIAQFVSKKAKKVIGVEAVPEAIADAKENAKRNNITNCEFFVGD 379
Query: 124 LNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + D F +PD++I+DP R GMH +++ +LK+ ++VYVSCN AT ARDL
Sbjct: 380 MKNVFNDEFIATHGQPDVIITDPPRDGMHKDVVEQILKVAPKKVVYVSCNSATQARDLAL 439
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ YK+ ++PVDMFP T H+E V LLE
Sbjct: 440 MDE---------MYKVTRVRPVDMFPQTHHVENVVLLE 468
>gi|225011827|ref|ZP_03702265.1| RNA methyltransferase, TrmA family [Flavobacteria bacterium
MS024-2A]
gi|225004330|gb|EEG42302.1| RNA methyltransferase, TrmA family [Flavobacteria bacterium
MS024-2A]
Length = 471
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 130/215 (60%), Gaps = 13/215 (6%)
Query: 7 SVGNTSVGEEEYT-LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRD 65
S GN S+ ++ YG+ ITE L L F+I+A SF+QTN QAEVLY + +D A L+
Sbjct: 262 SKGNDSLYDQNILCYYGQDFITEHLGDLQFKITAKSFYQTNPKQAEVLYSIGKDFAALK- 320
Query: 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
G+EIV DL+ GTGTI L+LA+ + G E VP+AI A NA N I NATF GD+
Sbjct: 321 -GNEIVYDLYTGTGTIALSLAKQCAKIIGVESVPEAIEAANENATFNKIKNATFEVGDMK 379
Query: 126 K-IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184
DF K ++VI+DP R GMH ++K LLKL RIVY+SCN +T ARDL+ +
Sbjct: 380 DCFNDDFIKRHGKAEVVITDPPRNGMHPDVVKQLLKLAPQRIVYISCNSSTQARDLELM- 438
Query: 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
KG Y + Q VDMFP T H+E V LL
Sbjct: 439 --------KGMYTVVKSQAVDMFPQTHHVENVVLL 465
>gi|406666101|ref|ZP_11073870.1| 23S rRNA (uracil-C(5))-methyltransferase RlmCD [Bacillus isronensis
B3W22]
gi|405385958|gb|EKB45388.1| 23S rRNA (uracil-C(5))-methyltransferase RlmCD [Bacillus isronensis
B3W22]
Length = 456
Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 127/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G + +TL+GK I +T+ + F+ISA SF+Q N Q EVLYK D
Sbjct: 245 VQNVNGEKTNVIFGNDTFTLWGKDTIEDTIGNVRFEISARSFYQVNPVQTEVLYKQALDY 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E V+D +CG G+I L LA+ HV G E+V QAI DA RNA LN +N F
Sbjct: 305 AQL--TGNERVIDAYCGIGSISLFLAQKAGHVMGVEIVEQAIEDAKRNAALNGFTNTYFE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + + D+++ DP R G L+ +++ K R+VYVSCNPAT ARDL
Sbjct: 363 AGPAEEVIPRWYKEGKEADVLVVDPPRKGCDEALLSTIIEQKPKRVVYVSCNPATLARDL 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G YK + +QPVDMFPHT H E V LEL
Sbjct: 423 RILE--------DGGYKTQEVQPVDMFPHTTHCEAVAWLEL 455
>gi|374606025|ref|ZP_09678926.1| RNA methyltransferase, trma family protein [Paenibacillus
dendritiformis C454]
gi|374388353|gb|EHQ59774.1| RNA methyltransferase, trma family protein [Paenibacillus
dendritiformis C454]
Length = 510
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/214 (42%), Positives = 126/214 (58%), Gaps = 10/214 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+NT N +G++ L+G IT+ + + F+ISA SF+Q N Q EVLY+ + A
Sbjct: 300 QNINTKRTNVIMGDKTRVLWGSEYITDYIGDIAFKISARSFYQVNPVQTEVLYEKAVEYA 359
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E V+D +CG GTI L LA+ + V G E+V +AI+DA RNA+LN I+NA F
Sbjct: 360 GL--SGQETVIDAYCGIGTISLFLAQRAQQVLGVEIVEEAIADARRNAELNGITNAEFAV 417
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + PD+++ DP R G L+ +L ++ RIVYVSCNP+T ARDL
Sbjct: 418 GGAEEVIPQWKERGLTPDVIVVDPPRKGCDPALLDTMLAMRPERIVYVSCNPSTLARDLR 477
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 215
L G Y + +QPVDMFP T H+EC
Sbjct: 478 VLA--------DGGYTVAEVQPVDMFPQTAHVEC 503
>gi|393199259|ref|YP_006461101.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046]
gi|327438590|dbj|BAK14955.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046]
Length = 454
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 127/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G + +TL+GK I +T+ + F+ISA SF+Q N Q EVLYK D
Sbjct: 243 VQNVNGEKTNVIFGNDTFTLWGKDTIEDTIGNVRFEISARSFYQVNPVQTEVLYKQALDY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E V+D +CG G+I L LA+ HV G E+V QAI DA RNA LN +N F
Sbjct: 303 AQL--TGNERVIDAYCGIGSISLFLAQKAGHVMGVEIVEQAIEDAKRNAALNGFTNTYFE 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + + D+++ DP R G L+ +++ K R+VYVSCNPAT ARDL
Sbjct: 361 AGPAEEVIPRWYKEGKEADVLVVDPPRKGCDEALLSTIIEQKPKRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G YK + +QPVDMFPHT H E V LEL
Sbjct: 421 RILE--------DGGYKTQEVQPVDMFPHTTHCEAVAWLEL 453
>gi|358464975|ref|ZP_09174933.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. oral
taxon 058 str. F0407]
gi|357066504|gb|EHI76654.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp. oral
taxon 058 str. F0407]
Length = 452
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 135/220 (61%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E +TLYG+ IT+ + G FQIS +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWHTLYGQDYITDQMLGNDFQISGPAFYQVNTIMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L+ D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 SELKSD--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSEKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPSLILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y+LK +QPVD+FP T H+ECV LLE
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLLE 449
>gi|414161550|ref|ZP_11417809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410875987|gb|EKS23901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 453
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 121/220 (55%), Gaps = 11/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N +G+ TLYGK I + L + F+IS SF+Q N+ Q LY
Sbjct: 243 IQNINETHTNVIMGKTSKTLYGKDEIIDELDSVEFEISDQSFYQINSSQTVKLYNQAMKY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E VLD +CG GTIGL +A KHVYG EVVP AI DA +NA+LN N TFV
Sbjct: 303 AQL--TGEETVLDTYCGIGTIGLYMADKAKHVYGVEVVPAAIEDAKKNAQLNGYDNTTFV 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + D+ +P++V+ DP R G + LL+L RIVY+SCNPAT RD
Sbjct: 361 CGKAESVILDWKQQGIQPNVVMVDPPRKGCDETFLNTLLELNPKRIVYISCNPATQQRDA 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Y LK + PVDMFP T HIE V L E
Sbjct: 421 QILAQN---------YALKEITPVDMFPQTTHIETVALFE 451
>gi|452854676|ref|YP_007496359.1| methyltransferase of m5U747 and m5U1939 in 23S RNA [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452078936|emb|CCP20689.1| methyltransferase of m5U747 and m5U1939 in 23S RNA [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 461
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G+E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGDETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDRALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELQ--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++ +K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIIDMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y+ +QPVDMFPHT H+ECV +LEL
Sbjct: 425 RVLE--------DGGYQTLEVQPVDMFPHTNHVECVAVLEL 457
>gi|420164219|ref|ZP_14670951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM095]
gi|420169056|ref|ZP_14675661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM087]
gi|420186107|ref|ZP_14692181.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM040]
gi|394232229|gb|EJD77847.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM095]
gi|394232358|gb|EJD77975.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM087]
gi|394252811|gb|EJD97834.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM040]
Length = 456
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 121/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L +T+ IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAKDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|345304392|ref|YP_004826294.1| RNA methyltransferase, TrmA family [Rhodothermus marinus
SG0.5JP17-172]
gi|345113625|gb|AEN74457.1| RNA methyltransferase, TrmA family [Rhodothermus marinus
SG0.5JP17-172]
Length = 466
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 137/220 (62%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+N +NT S GE YT++G I + + F+I+ ++FFQTNT QAE LY + +
Sbjct: 255 VNTINTRPAQVSYGEATYTIFGPGVIHDCIGPFRFEIAPDAFFQTNTEQAERLYAVTREL 314
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR D ++V DL+CGTGTI + +A V+HV G E+V A+ +A NA N+I+N TFV
Sbjct: 315 AALRPD--DLVYDLYCGTGTISIFIAPQVRHVIGVELVESAVENARANAAANHITNCTFV 372
Query: 121 QGDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GDL ++ F A +P++VI DP R GMH +++ + +L+ R VYVSCNP T ARD
Sbjct: 373 AGDLLEVLTPTFIQAHGRPNVVIVDPPRGGMHPSVVRRIGQLRPERFVYVSCNPQTQARD 432
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L L + Y+++++QPVD+FPHT H+E V L
Sbjct: 433 LKLL---------RDLYRIEAVQPVDLFPHTDHVESVVAL 463
>gi|322391885|ref|ZP_08065350.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC
700780]
gi|321145365|gb|EFX40761.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus peroris ATCC
700780]
Length = 451
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E LYG+ IT+ + G +FQIS +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRVLYGQDYITDQMLGNSFQISGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L ++ ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA +N I+NA +V
Sbjct: 300 AELSEE--DVVIDAYSGIGTIGLSVAKHVKDVYGVEVIPEAVENSQKNASINGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ADSAENAMTKWSKNGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVEAVSLL 448
>gi|251794918|ref|YP_003009649.1| TrmA family RNA methyltransferase [Paenibacillus sp. JDR-2]
gi|247542544|gb|ACS99562.1| RNA methyltransferase, TrmA family [Paenibacillus sp. JDR-2]
Length = 465
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 124/219 (56%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+E L+G I + L G+ F ISA SF+Q N Q LY+ D
Sbjct: 254 VQNVNTRDTNVIFGDETKVLWGSEVIYDELDGIRFAISARSFYQVNPSQTIELYRTAVDY 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LAR VYG E+VP+AI DA RNA+LN ISNA+F
Sbjct: 314 AQL--TGKESVIDAYCGIGTISLFLARKAGRVYGVEIVPEAIEDAKRNAELNGISNASFE 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + PD+++ DP R G L+ +LK++ R+VYVSCNP+T ARDL
Sbjct: 372 AGPAEVVIPRWREEGIIPDVIVVDPPRKGCDPALLDTILKMQPERVVYVSCNPSTLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G YK + PVDMFP T H+ECV +
Sbjct: 432 RTLE--------DGGYKTVEVTPVDMFPWTSHVECVVWM 462
>gi|335050256|ref|ZP_08543230.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera sp. UPII
199-6]
gi|333757587|gb|EGL35147.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera sp. UPII
199-6]
Length = 461
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 137/222 (61%), Gaps = 14/222 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N +G + TLYG+ I + + L F ISA SFFQ N+ QA+ LY+ +
Sbjct: 248 IQNINTGHTNVILGRKTRTLYGQDTIHDAIGNLRFHISAQSFFQVNSEQAQRLYEKAMEF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G+EIV D++CGTGTI L LA+ K VYG E+VP AI DA RNA+ N++ NA F+
Sbjct: 308 ADLK--GNEIVADVYCGTGTITLFLAQKAKQVYGIEIVPSAIKDAIRNARDNHVKNAEFI 365
Query: 121 QGD-LNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD + K+ N +P +++ DP R G +++ + + + R+VYVSCNPAT ARD
Sbjct: 366 LGDAVYKLPELIKNGV-RPQVIVLDPPRAGCGEPVLRAIGRSQPERVVYVSCNPATLARD 424
Query: 180 LDYL-CHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L L +G YK + +QPVDMF T H+EC+ L++
Sbjct: 425 LACLQTYG---------YKTERVQPVDMFSRTHHVECIALIQ 457
>gi|332664986|ref|YP_004447774.1| TrmA family RNA methyltransferase [Haliscomenobacter hydrossis DSM
1100]
gi|332333800|gb|AEE50901.1| RNA methyltransferase, TrmA family [Haliscomenobacter hydrossis DSM
1100]
Length = 470
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 129/220 (58%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+NT + +T +T GK E L + F+I SFFQTNT Q E LY ++ A L
Sbjct: 260 INTKMNDTIWDLPVHTWSGKGYAEEQLGHVRFRIGPKSFFQTNTRQGENLYDVVTRFANL 319
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
+ G E V DL+ G G+IGL +A+ K V G E V AI DA NA++N + N F GD
Sbjct: 320 Q--GHENVYDLYTGIGSIGLYVAKDCKQVVGIEEVAAAIDDAKINAEVNGVENVKFYVGD 377
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I +F KPD++I+DP R GMH +I LL+L+APRIVYVSCNP T ARDL
Sbjct: 378 VRAILTTEFAAQHGKPDLLITDPPRAGMHEDVINMLLELEAPRIVYVSCNPGTQARDLGR 437
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y++ +QPVDMFPHT HIE V LLEL+
Sbjct: 438 LSTK---------YQVLKVQPVDMFPHTHHIESVALLELN 468
>gi|253316906|ref|ZP_04840119.1| RNA methyltransferase-like protein [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
Length = 453
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 125/220 (56%), Gaps = 11/220 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S N +G + TLYGK I + L TF+IS SF+Q N+ Q E LY + A
Sbjct: 245 NINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQ 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+VLD +CG GTIGL +A KHVYG EVVP +I DA +NA +N +N TFV G
Sbjct: 305 LT--GNEVVLDTYCGIGTIGLYMAPHAKHVYGVEVVPSSIEDAQQNATINQCNNTTFVCG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + K D+V+ DP R G I+ LL L+ RIVY+SCNPAT RD
Sbjct: 363 KAEEVILQWKAQGIKSDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALL 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+L+ + PVDMFP T H+E V L L
Sbjct: 423 LAEK---------YQLEEVTPVDMFPQTTHVETVALFNLK 453
>gi|384174349|ref|YP_005555734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
gi|349593573|gb|AEP89760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
Length = 459
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELQ--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + K D ++ DP R G L++ ++++K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGIKADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y+ +QPVDMFPHT H+ECV +L+L
Sbjct: 425 RVLED--------GGYQTLEVQPVDMFPHTNHVECVAVLKL 457
>gi|288803297|ref|ZP_06408730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
melaninogenica D18]
gi|288334117|gb|EFC72559.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
melaninogenica D18]
Length = 474
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 131/219 (59%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + + E TL+ G +I ET+ L F++ SF+QTNT QA LY + + A
Sbjct: 265 VDNQKGNDTFNDLELTLFKGNDHIFETMEDLRFKVGPKSFYQTNTEQAYHLYSVAREFAN 324
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+V DL+ GTGTI +A+ + V G E VP+AI DA N+++N I N F G
Sbjct: 325 LT--GNELVYDLYTGTGTIANFVAKKAQKVIGIEYVPEAIEDAKVNSEVNKIDNTLFYAG 382
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I DF + +PD++I+DP R GMH ++ +L RIVYVSCNPAT ARDL
Sbjct: 383 DMKDILTEDFISEHGRPDVIITDPPRAGMHPDVVNVILGASPKRIVYVSCNPATQARDLA 442
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YK+ ++QPVDMFP TPH+E V LLE
Sbjct: 443 LL---------DADYKVSAVQPVDMFPQTPHVENVVLLE 472
>gi|56962873|ref|YP_174600.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
clausii KSM-K16]
gi|56909112|dbj|BAD63639.1| S-adenosylmethionine (SAM)-dependent methyltransferase [Bacillus
clausii KSM-K16]
Length = 458
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G++ L+G+ + + + + F ISA SF+Q N Q LY +
Sbjct: 246 VQNINNKRTNVIFGQQTDVLWGEHYLYDEINSIRFAISARSFYQVNPEQTNRLYSKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+EIV+D +CG GTI L LA+ +HVYG E+VP+AI DA RNAKLN I+NATF
Sbjct: 306 ADL--TGNEIVIDAYCGIGTISLFLAKKARHVYGVEIVPEAIKDAKRNAKLNQITNATFA 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ ++ + + D+++ DP R G L++ ++++K RIVYVSCNP T ARDL
Sbjct: 364 VGEAEEVIPRWHDQGIDADVIVVDPPRKGCDEALLRTMMEMKPKRIVYVSCNPGTLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G YK + + PVDMFP T H+E V L
Sbjct: 424 RILE--------DGGYKTEEVTPVDMFPQTTHVEAVARL 454
>gi|386757343|ref|YP_006230559.1| TrmA family RNA methyltransferase [Bacillus sp. JS]
gi|384930625|gb|AFI27303.1| RNA methyltransferase, TrmA family [Bacillus sp. JS]
Length = 460
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 129/220 (58%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELQ--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++++K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L G Y+ + +QPVDMFPHT H+ECV +LE
Sbjct: 425 RVLE--------DGGYETREVQPVDMFPHTNHVECVAVLE 456
>gi|422422407|ref|ZP_16499360.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
S4-171]
gi|313637500|gb|EFS02936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
S4-171]
Length = 459
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 126/222 (56%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + GEE + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSIIFGEETFLLAGKESIHEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G + +P++I DA RNA+ N + N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFASKVKEVRGIDTIPESIEDAKRNAEKNGLENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD VI DP R G LI+ LL+ +A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVFPKWMKEGFKPDAVIVDPPRSGCDQGLIQSLLQAEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LLEL
Sbjct: 425 ALLAKK---------YRVRYMQPVDMFPQTAHVETVVLLELK 457
>gi|418606943|ref|ZP_13170204.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU057]
gi|84029598|sp|Q8CRU6.2|Y1582_STAES RecName: Full=Uncharacterized RNA methyltransferase SE_1582
gi|374406660|gb|EHQ77551.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU057]
Length = 456
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 121/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L +T+ IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|347536997|ref|YP_004844422.1| tRNA (uracil-5-)-methyltransferase [Flavobacterium branchiophilum
FL-15]
gi|345530155|emb|CCB70185.1| tRNA (uracil-5-)-methyltransferase [Flavobacterium branchiophilum
FL-15]
Length = 471
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 136/216 (62%), Gaps = 19/216 (8%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N ++ +++ LY G+ I E + GL F I+A SF+QTN+ QA LY++ D AGL G+
Sbjct: 267 NDTIYDQKVHLYKGRDYILEEMEGLQFSINAKSFYQTNSEQAYQLYQITRDFAGL--TGN 324
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
EIV DL+ GTGTI +++ K V G E VP+AI+DA NAK NNISN F GD+ +
Sbjct: 325 EIVYDLYTGTGTIAQFVSQKAKKVIGVEAVPEAIADAKVNAKRNNISNCDFFVGDMKVV- 383
Query: 129 GDFGNAF----PKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184
F AF +PD++I+DP R GMH +++ +LK+ ++VYVSCN AT ARDL
Sbjct: 384 --FNEAFIAQNGQPDVIITDPPRDGMHKDVVEQILKIAPQKVVYVSCNSATQARDL---- 437
Query: 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ D+ YK+ ++PVDMFP T H+E V LLE
Sbjct: 438 -ALMDEK----YKVTRVRPVDMFPQTHHVENVVLLE 468
>gi|417910964|ref|ZP_12554677.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU105]
gi|418622450|ref|ZP_13185201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU123]
gi|420186796|ref|ZP_14692821.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM039]
gi|341654403|gb|EGS78149.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU105]
gi|374826840|gb|EHR90720.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU123]
gi|394257439|gb|EJE02359.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM039]
Length = 456
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 121/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L +T+ IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|300118952|ref|ZP_07056663.1| RNA methyltransferase, TrmA family protein [Bacillus cereus SJ1]
gi|298723568|gb|EFI64299.1| RNA methyltransferase, TrmA family protein [Bacillus cereus SJ1]
Length = 458
Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LN+++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNDMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|398305378|ref|ZP_10508964.1| putative RNA methyltransferase [Bacillus vallismortis DV1-F-3]
Length = 461
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELQ--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++++K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y + +QPVDMFPHT H+ECV +LE+
Sbjct: 425 RVLE--------DGGYATREVQPVDMFPHTNHVECVAVLEI 457
>gi|392948241|ref|ZP_10313852.1| 23S rRNA methyltransferase, TrmA family [Lactobacillus pentosus
KCA1]
gi|392436447|gb|EIW14360.1| 23S rRNA methyltransferase, TrmA family [Lactobacillus pentosus
KCA1]
Length = 457
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 128/222 (57%), Gaps = 13/222 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +G L GKS I + L GLTF ISA SF+Q N Q E LY+L D
Sbjct: 244 IQNVNSKKTNVILGPVNNVLAGKSTIDDQLLGLTFAISAQSFYQVNPQQTEKLYQLAIDR 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G+E V+D + G GTI LT+A+ K VYG E+VP AI +A +NA N I+NA FV
Sbjct: 304 AGL--TGNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADENGITNAKFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ R+VY+SCNP+T RD+
Sbjct: 362 LDSAEKAMAKWQADGIKPDVIVVDPPRKGLDADFIKSAGEMAPKRVVYISCNPSTLVRDV 421
Query: 181 DYLCHGVGDQNIKGC-YKLKS-LQPVDMFPHTPHIECVCLLE 220
Q C Y++ + +QPVD FP TPHIE V +LE
Sbjct: 422 ---------QRFAECGYQISAPVQPVDQFPQTPHIESVTVLE 454
>gi|399032071|ref|ZP_10731740.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flavobacterium sp.
CF136]
gi|398069599|gb|EJL60945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flavobacterium sp.
CF136]
Length = 470
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/223 (45%), Positives = 135/223 (60%), Gaps = 19/223 (8%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V S N ++ ++ LY G+ I E + GL F I+A SF+QTN+ QA LYK+ D AG
Sbjct: 261 VVNSKQNDTIYDQNIKLYKGRDYILEEMEGLKFSINAKSFYQTNSDQAYELYKITRDFAG 320
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V DL+ GTGTI +++ K V G E VP+AI DA NA+ NNI+N F G
Sbjct: 321 L--SGDETVYDLYTGTGTIAQFVSKKAKKVIGVESVPEAILDAKANAERNNITNCEFFVG 378
Query: 123 DLNKIGGDFGNAF----PKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR 178
D+ + F AF KPD++I+DP R GMH +I+ +LK+ ++VYVSCN AT AR
Sbjct: 379 DMKVV---FNEAFIAQHGKPDVIITDPPRDGMHKDVIEQILKIAPEKVVYVSCNSATQAR 435
Query: 179 DLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
DL + D+ YK+ ++PVDMFP T H+E V LLEL
Sbjct: 436 DL-----ALMDEK----YKVTRVRPVDMFPQTHHVENVVLLEL 469
>gi|422809785|ref|ZP_16858196.1| RNA methyltransferase, TrmA family [Listeria monocytogenes FSL
J1-208]
gi|378752104|gb|EHY62690.1| RNA methyltransferase, TrmA family [Listeria monocytogenes FSL
J1-208]
Length = 459
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 128/222 (57%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + +PD VI DP R G LIK LL+++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVKEGFRPDAVIVDPPRSGCDQGLIKSLLEVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LL+L
Sbjct: 425 VLLAKK---------YRIRYMQPVDMFPQTAHVETVVLLQLK 457
>gi|375361374|ref|YP_005129413.1| TrmA family RNA methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|371567368|emb|CCF04218.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
Length = 461
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G+E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGDETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELQ--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++ +K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIIDMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y+ +QPVDMFPHT H+ECV +LEL
Sbjct: 425 RVLE--------DGGYQTLEVQPVDMFPHTNHVECVAVLEL 457
>gi|423068264|ref|ZP_17057052.1| hypothetical protein HMPREF9682_00273 [Streptococcus intermedius
F0395]
gi|355367155|gb|EHG14868.1| hypothetical protein HMPREF9682_00273 [Streptococcus intermedius
F0395]
Length = 451
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 135/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N NT G++ TL+G+ IT+ + FQI+A +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNTIFGKDWQTLHGRDYITDRMLNNDFQIAAPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA++N I+N +V
Sbjct: 300 SELAAD--DVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAEINGITNTHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ KPD+++ DP R G+ I+ + ++ +I+Y+SCNPAT ARD+
Sbjct: 358 CDSAENAMANWSKQDIKPDVILVDPPRKGLTESFIESSVSMEPKKIIYISCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKLK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YKLKKVQPVDLFPQTHHVECVALL 448
>gi|90962313|ref|YP_536229.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius
UCC118]
gi|90821507|gb|ABE00146.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius
UCC118]
Length = 459
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 125/220 (56%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN N +G++ L GK I +TL GL F ISA SF+Q N Q E LY+L +
Sbjct: 244 MLNVNPDKTNVILGKKTIKLAGKDTIQDTLNGLKFDISAQSFYQVNPQQTEKLYQLAIEN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L +A++ K VYG E+VP+AI DA NA LN++ N F
Sbjct: 304 AELT--GKETVIDAYCGIGTISLNMAKFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFE 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + KPD+++ DP R G+ LI+ + ++ ++VYVSCNPAT RD+
Sbjct: 362 VGEAEVWMEKWQKQGIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKVVYVSCNPATLVRDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G KS+QPVD FP T H+E V +LE
Sbjct: 422 QEFMEL-------GYQVTKSIQPVDQFPQTTHVESVTVLE 454
>gi|315303539|ref|ZP_07874104.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
F6-596]
gi|313628091|gb|EFR96659.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
F6-596]
Length = 459
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 126/222 (56%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + GEE + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSIIFGEETFLLAGKESIHEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G + +P++I DA RNA+ N + N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + KPD VI DP R G LI LL+ +A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEEVFPKWMKEGFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LLEL
Sbjct: 425 ALLAKK---------YRVRYMQPVDMFPQTAHVETVVLLELK 457
>gi|423514089|ref|ZP_17490605.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA2-1]
gi|402443057|gb|EJV74971.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus
HuA2-1]
Length = 458
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 128/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++N F
Sbjct: 307 AKL--NGDETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNTEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|289435036|ref|YP_003464908.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171280|emb|CBH27822.1| RNA methyltransferase [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 459
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 126/222 (56%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + GEE + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSIIFGEETFLLAGKESIHEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G + +P++I DA RNA+ N + N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + KPD VI DP R G LI LL+ +A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEEVFPKWMKEGFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LLEL
Sbjct: 425 ALLAKK---------YRVRYMQPVDMFPQTAHVETVVLLELK 457
>gi|282877944|ref|ZP_06286753.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccalis
ATCC 35310]
gi|281299945|gb|EFA92305.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccalis
ATCC 35310]
Length = 508
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 133/219 (60%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ N + G++ ++ GK +ITET+ L F+++A SF+QTNT+QA LY + + A
Sbjct: 299 VDNQKCNDTFGDQTVVVFKGKDHITETMGDLKFKVAAKSFYQTNTNQAYHLYSVAREFAQ 358
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E+V DL+ GTGTI +AR + V G E V AI DA N+ N+I N F G
Sbjct: 359 LT--GKELVYDLYTGTGTIANFVAREAREVIGIEYVEDAIKDAKVNSAANDIHNTQFYAG 416
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I +F +PD++I+DP R GMH +++ +L RIVYVSCNPAT ARDL
Sbjct: 417 DMKDILTEEFIAEHGRPDVIITDPPRAGMHPDVVRTILGAAPQRIVYVSCNPATQARDL- 475
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + YK+ ++QPVDMFPHTPH+E V LLE
Sbjct: 476 --------QMLDEQYKVMAVQPVDMFPHTPHVENVVLLE 506
>gi|404413783|ref|YP_006699370.1| TrmA/RumA/YfjO family RNA methyltransferase [Listeria monocytogenes
SLCC7179]
gi|404239482|emb|CBY60883.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
monocytogenes SLCC7179]
Length = 459
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 127/222 (57%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + +PD VI DP R G LIK LL ++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVKEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LL+L
Sbjct: 425 ALLAKK---------YRIRYMQPVDMFPQTAHVETVVLLQLK 457
>gi|126649590|ref|ZP_01721831.1| RNA methyltransferase [Bacillus sp. B14905]
gi|126593915|gb|EAZ87838.1| RNA methyltransferase [Bacillus sp. B14905]
Length = 459
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN N G++ L+GK I +T+ + F+ISA SF+Q N Q EVLYK D
Sbjct: 248 MQNVNHEKTNVIFGDDTLNLWGKDVIIDTIGDVRFEISARSFYQVNPEQTEVLYKQALDY 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K V G E+VPQAI DA RNA LN +N F
Sbjct: 308 ANLQ--GDERVIDAYCGIGTISLFLAQKAKAVMGVEIVPQAIEDAKRNAVLNGFTNTYFE 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + + D+++ DP R G L+K +L+ + R+VYVSCNPAT ARDL
Sbjct: 366 AGPAEEVIPRWYKEGKEADVLVVDPPRKGCDEALLKTILEQRPKRVVYVSCNPATLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y+ + +QPVDMFPH+ H E V L
Sbjct: 426 RILED--------GGYQTQEIQPVDMFPHSTHCEAVAWL 456
>gi|300727266|ref|ZP_07060682.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bryantii
B14]
gi|299775504|gb|EFI72098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bryantii
B14]
Length = 484
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 130/219 (59%), Gaps = 15/219 (6%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
VN GN + G+ + ++ GK I ET+ L F++ SF+QTNT QA LY++ + A
Sbjct: 275 VNNQKGNDTFGDLDIEVFKGKDYIYETMEDLKFKVGPKSFYQTNTDQAYHLYEVARNFAE 334
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L +G E+V DL+ GTGTI +A K V G E VP+AI DA N+++N I N F G
Sbjct: 335 L--NGEELVYDLYTGTGTIANFVAHHSKKVIGIEYVPEAIEDAKVNSEINGIDNTLFYAG 392
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I DF +PD++I+DP R GMH +I+ +L RIVYVSCNPAT ARDL
Sbjct: 393 DMKDILTDDFIKQHGRPDVIITDPPRAGMHPDVIQVILNAAPKRIVYVSCNPATQARDLA 452
Query: 182 YLCHGVGDQNIKGC-YKLKSLQPVDMFPHTPHIECVCLL 219
L C YK+ +QPVDMFPHTPH+E V L
Sbjct: 453 LL----------DCDYKVMQVQPVDMFPHTPHVENVVQL 481
>gi|120436238|ref|YP_861924.1| tRNA (uracil-5-)-methyltransferase [Gramella forsetii KT0803]
gi|117578388|emb|CAL66857.1| tRNA (uracil-5-)-methyltransferase [Gramella forsetii KT0803]
Length = 469
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 130/218 (59%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VNT +T +E G+ +I E + GL F+I+A SF+QTN+ QA LYK+ D A L
Sbjct: 261 VNTKANDTIYDQEVICFKGRDHIFEEMEGLKFKINAKSFYQTNSEQAYNLYKITRDYANL 320
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
+ G E+V DL+ GTGTI +A+ K V G E VP+AI DA NA+ N I N F GD
Sbjct: 321 K--GDELVYDLYTGTGTIAQFVAKNAKKVIGVEAVPEAIKDAKENAERNKIQNVEFYVGD 378
Query: 124 LNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K+ + F N PD++I+DP R GMH ++ ++ + RIVYVSCN AT ARDL
Sbjct: 379 MKKVFTESFINKHGHPDVIITDPPRDGMHKDVVAQIIGILPERIVYVSCNSATQARDLSL 438
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L D++ YK+ +Q VDMFP T H+E V LE
Sbjct: 439 L-----DEH----YKVTQIQAVDMFPQTHHVENVVCLE 467
>gi|345867261|ref|ZP_08819276.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bizionia argentinensis
JUB59]
gi|344048304|gb|EGV43913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bizionia argentinensis
JUB59]
Length = 470
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 127/218 (58%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN +T +E G +I E + GL F+I+A SF+QTN+ QA LYK+ D AGL
Sbjct: 262 VNEKANDTIYDQEVICYKGNDHIFEEMEGLRFKINAKSFYQTNSDQAYELYKITRDFAGL 321
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +A+ + V G E VP AI A NA+LN I N F GD
Sbjct: 322 --SGNELVYDLYTGTGTIAQFVAKEAQKVVGVEAVPDAILAAKENAELNGIQNVDFYVGD 379
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K+ DF N PD++I+DP R GMH +++ +L + +IVYVSCN AT ARDL
Sbjct: 380 MKKVFNQDFINTHGHPDVIITDPPRDGMHKDVVQQILNISPKKIVYVSCNSATQARDL-- 437
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + YK+ Q VDMFP T H+E V LLE
Sbjct: 438 -------QLMDAQYKVTRTQAVDMFPQTHHVENVVLLE 468
>gi|334882581|emb|CCB83616.1| uncharacterized RNA methyltransferase lp_1151 [Lactobacillus
pentosus MP-10]
Length = 458
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 127/221 (57%), Gaps = 11/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +G L GKS I + L GLTF ISA SF+Q N Q E LY+L D
Sbjct: 244 IQNVNSKKTNVILGPVNNVLAGKSTIDDQLLGLTFAISAQSFYQVNPQQTEKLYQLAIDR 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G+E V+D + G GTI LT+A+ K VYG E+VP AI +A +NA N I+NA FV
Sbjct: 304 AGL--TGNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNAKFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ R+VY+SCNP+T RD+
Sbjct: 362 LDSAEKAMAKWQADGIKPDVIVVDPPRKGLDADFIKSAGEMAPKRVVYISCNPSTLVRDV 421
Query: 181 DYLCHGVGDQNIKGCYKLKS-LQPVDMFPHTPHIECVCLLE 220
+ Y++ + +QPVD FP TPHIE V +LE
Sbjct: 422 QRFA--------EYGYQISAPVQPVDQFPQTPHIESVTVLE 454
>gi|27468500|ref|NP_765137.1| RNA methyltransferase-like protein [Staphylococcus epidermidis ATCC
12228]
gi|27316047|gb|AAO05181.1|AE016749_127 RNA methyltransferase-like protein [Staphylococcus epidermidis ATCC
12228]
Length = 472
Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 121/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L +T+ IS SF+Q N+ Q E LY+ + A
Sbjct: 260 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYA 319
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 320 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 377
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 378 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 437
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 438 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 466
>gi|290894402|ref|ZP_06557365.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|404408145|ref|YP_006690860.1| TrmA/RumA/YfjO family RNA methyltransferase [Listeria monocytogenes
SLCC2376]
gi|290556063|gb|EFD89614.1| RNA methyltransferase [Listeria monocytogenes FSL J2-071]
gi|404242294|emb|CBY63694.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
monocytogenes SLCC2376]
Length = 459
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 127/222 (57%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + +PD VI DP R G LIK LL ++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVKEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LL+L
Sbjct: 425 ALLAKK---------YRIRYMQPVDMFPQTAHVETVVLLQLK 457
>gi|148544651|ref|YP_001272021.1| RNA methyltransferase [Lactobacillus reuteri DSM 20016]
gi|184154004|ref|YP_001842345.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
gi|148531685|gb|ABQ83684.1| RNA methyltransferase, TrmA family [Lactobacillus reuteri DSM
20016]
gi|183225348|dbj|BAG25865.1| RNA methyltransferase [Lactobacillus reuteri JCM 1112]
Length = 459
Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 126/222 (56%), Gaps = 9/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G + TL+G I + L G+ F IS SF+Q N Q E LY+ D
Sbjct: 244 VQNINDKRTNRLLGNKNKTLWGADEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIDN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL DG++ V+D +CG GTI L +A+ K VYG E+VP AI DA NAK N I NA FV
Sbjct: 304 AGL--DGNQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD+VI DP R G+ LI+ K+ +++YVSCNPAT RD+
Sbjct: 362 VGKAEEQFAKWQAEGLKPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSCNPATLVRDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
DQ G + K +QPVD FP T H+E V +LE +
Sbjct: 422 KRFA----DQ---GYHVTKPIQPVDQFPQTTHVESVTVLERA 456
>gi|168181980|ref|ZP_02616644.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
gi|237796828|ref|YP_002864380.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
Ba4 str. 657]
gi|182674796|gb|EDT86757.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
gi|229263636|gb|ACQ54669.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
Ba4 str. 657]
Length = 461
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 131/220 (59%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N +GE+ TL+GK IT+ + F IS SFFQ N Q EVLYK +
Sbjct: 248 IQNVNTKKTNVILGEKCITLWGKDAITDYIDKFKFNISPLSFFQVNPVQTEVLYKKALEF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G EIV D +CGTGTI L L++ K VYG E++ +AI +A NA+ NN++N F
Sbjct: 308 ADLK--GEEIVFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAEDNAEENNVNNTEFF 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ D N K D+V+ DP R G L++ + K RIVYVSC+P T ARDL
Sbjct: 366 VGRSEEVIPDLINKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G+G Y+ K +QPVDMFP T H+E + L++
Sbjct: 426 GIL-NGLG-------YETKEVQPVDMFPQTSHVETIVLIQ 457
>gi|16803743|ref|NP_465228.1| hypothetical protein lmo1703 [Listeria monocytogenes EGD-e]
gi|254829227|ref|ZP_05233914.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
gi|254913722|ref|ZP_05263734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
J2818]
gi|254938109|ref|ZP_05269806.1| RNA methyltransferase [Listeria monocytogenes F6900]
gi|386044013|ref|YP_005962818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
10403S]
gi|386047354|ref|YP_005965686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
J0161]
gi|386050679|ref|YP_005968670.1| RNA methyltransferase [Listeria monocytogenes FSL R2-561]
gi|386053955|ref|YP_005971513.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
Finland 1998]
gi|404284199|ref|YP_006685096.1| TrmA/RumA/YfjO family RNA methyltransferase [Listeria monocytogenes
SLCC2372]
gi|404411005|ref|YP_006696593.1| TrmA/RumA/YfjO family RNA methyltransferase [Listeria monocytogenes
SLCC5850]
gi|405758754|ref|YP_006688030.1| TrmA/RumA/YfjO family RNA methyltransferase [Listeria monocytogenes
SLCC2479]
gi|50401633|sp|Q8Y6I1.1|Y1703_LISMO RecName: Full=Uncharacterized RNA methyltransferase lmo1703
gi|16411157|emb|CAC99781.1| lmo1703 [Listeria monocytogenes EGD-e]
gi|258601638|gb|EEW14963.1| RNA methyltransferase [Listeria monocytogenes FSL N3-165]
gi|258610721|gb|EEW23329.1| RNA methyltransferase [Listeria monocytogenes F6900]
gi|293591737|gb|EFG00072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
J2818]
gi|345534345|gb|AEO03786.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
J0161]
gi|345537247|gb|AEO06687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
10403S]
gi|346424525|gb|AEO26050.1| RNA methyltransferase [Listeria monocytogenes FSL R2-561]
gi|346646606|gb|AEO39231.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
Finland 1998]
gi|404230831|emb|CBY52235.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
monocytogenes SLCC5850]
gi|404233701|emb|CBY55104.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
monocytogenes SLCC2372]
gi|404236636|emb|CBY58038.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
monocytogenes SLCC2479]
Length = 459
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 127/222 (57%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + +PD VI DP R G LIK LL ++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVKEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LL+L
Sbjct: 425 ALLAKK---------YRIRYMQPVDMFPQTAHVETVVLLQLK 457
>gi|420178620|ref|ZP_14684949.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM057]
gi|420180943|ref|ZP_14687151.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM053]
gi|394246131|gb|EJD91395.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM057]
gi|394248256|gb|EJD93496.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM053]
Length = 456
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 121/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L + + IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVIYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD++CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDMYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|418325968|ref|ZP_12937165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU071]
gi|365226999|gb|EHM68207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU071]
Length = 456
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 121/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L +T+ IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSAQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQLRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|255528224|ref|ZP_05395044.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
gi|296188118|ref|ZP_06856510.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
carboxidivorans P7]
gi|255508074|gb|EET84494.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
gi|296047244|gb|EFG86686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
carboxidivorans P7]
Length = 450
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 131/219 (59%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N S + +E LYG+ I E L GL F+I+ SFFQTN+ AE LY ++++
Sbjct: 243 LHTINDSFSDVVQADEIKVLYGRDYIIEELMGLKFKIAPESFFQTNSKGAEKLYSIVKEF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D S++V DL+CGTGTIG +A K V G E++ +A+ A N+KLN ++N F+
Sbjct: 303 LG--DASSKVVFDLYCGTGTIGQIVAPNAKKVLGIELIEEAVKAANENSKLNGLNNCEFI 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ KPD++I DP RPG+H + +++K AP IVYVSCNP T DL
Sbjct: 361 AGDVAKV---IKTVTEKPDVIILDPPRPGVHPVALDYVIKFNAPDIVYVSCNPKTLVTDL 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L I+ Y ++ ++ +DMFPHTPH+E V L
Sbjct: 418 KGL--------IEAGYTVEKVKIMDMFPHTPHVETVVKL 448
>gi|415898696|ref|ZP_11551419.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4453]
gi|416136825|ref|ZP_11598763.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4452]
gi|430827656|ref|ZP_19445788.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0269]
gi|430871313|ref|ZP_19483705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1575]
gi|431146178|ref|ZP_19499075.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1620]
gi|431746215|ref|ZP_19535049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2134]
gi|431781866|ref|ZP_19570006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6012]
gi|431785757|ref|ZP_19573780.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6045]
gi|364089826|gb|EHM32474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4453]
gi|364091650|gb|EHM34094.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4452]
gi|430484258|gb|ELA61279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0269]
gi|430558011|gb|ELA97445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1575]
gi|430575718|gb|ELB14415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1620]
gi|430608984|gb|ELB46190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2134]
gi|430646916|gb|ELB82377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6045]
gi|430648267|gb|ELB83674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E6012]
Length = 457
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ + I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGVKPSVIVVDPPRKGLDHRFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 451
>gi|146300255|ref|YP_001194846.1| RNA methyltransferase [Flavobacterium johnsoniae UW101]
gi|146154673|gb|ABQ05527.1| RNA methyltransferase, TrmA family [Flavobacterium johnsoniae
UW101]
Length = 470
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 134/217 (61%), Gaps = 19/217 (8%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N ++ +++ LY G++ I E + GL F I+A SF+QTN+ QA LYK+ D AGL G
Sbjct: 267 NDTIYDQDIKLYKGRNYILEEMEGLKFSINAKSFYQTNSDQAYELYKITRDYAGL--TGE 324
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
E V DL+ GTGTI +++ K V G E VP+AI DA NA+ NNI+N F GD+ +
Sbjct: 325 ETVYDLYTGTGTIAQFVSKKAKKVIGVESVPEAILDAKANAERNNITNCEFFVGDMKVV- 383
Query: 129 GDFGNAF----PKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184
F AF KPD++I+DP R GMH +I +LK+ ++VYVSCN AT ARDL
Sbjct: 384 --FNEAFIAQHGKPDVIITDPPRDGMHAAVIDQILKIAPKKVVYVSCNSATQARDL---- 437
Query: 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
+ D+ YK+ ++PVDMFP T H+E V LLEL
Sbjct: 438 -ALMDEK----YKVTRVRPVDMFPQTHHVENVVLLEL 469
>gi|217964147|ref|YP_002349825.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
HCC23]
gi|386008476|ref|YP_005926754.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
monocytogenes L99]
gi|386027080|ref|YP_005947856.1| putative RNA methyltransferase [Listeria monocytogenes M7]
gi|217333417|gb|ACK39211.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria monocytogenes
HCC23]
gi|307571286|emb|CAR84465.1| RNA methyltransferase, TrmA/RumA/YfjO family [Listeria
monocytogenes L99]
gi|336023661|gb|AEH92798.1| putative RNA methyltransferase [Listeria monocytogenes M7]
Length = 458
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 127/222 (57%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + +PD VI DP R G LIK LL ++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVKEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LL+L
Sbjct: 425 ALLAKK---------YRIRYMQPVDMFPQTAHVETVVLLQLK 457
>gi|421861714|ref|ZP_16293662.1| methyltransferase [Paenibacillus popilliae ATCC 14706]
gi|410828753|dbj|GAC44099.1| methyltransferase [Paenibacillus popilliae ATCC 14706]
Length = 460
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 127/218 (58%), Gaps = 10/218 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+NT N +G++ L+G IT+ + + F+ISA SF+Q N Q EVLY+ + AG
Sbjct: 249 NMNTKRTNVIMGDKTRILWGSEYITDDIGDIAFKISARSFYQVNPVQTEVLYEKAVEYAG 308
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V+D +CG GTI L LAR K V G E+V +AI+DA RNA+LN I+NA F G
Sbjct: 309 L--SGQETVIDAYCGIGTISLFLARRAKRVLGVEIVEEAIADAHRNAELNGITNAEFAVG 366
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + PD+++ DP R G L+ +L ++ RIVYVSCNP+T ARD+
Sbjct: 367 AAEDVIPQWKERGLAPDVIVVDPPRKGCDPALLDTMLAMRPERIVYVSCNPSTLARDMRV 426
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L G Y + +QPVDMFP T H+E V ++
Sbjct: 427 LA--------DGGYTMVEVQPVDMFPQTAHVEVVIGMQ 456
>gi|342163687|ref|YP_004768326.1| hypothetical protein SPPN_05150 [Streptococcus pseudopneumoniae
IS7493]
gi|341933569|gb|AEL10466.1| hypothetical protein SPPN_05150 [Streptococcus pseudopneumoniae
IS7493]
Length = 452
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 135/220 (61%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G +QI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDFITDQMLGNDYQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L++D ++V+D + G GTIG+++A+ VK VYG EV+P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKED--DVVIDAYSGIGTIGISVAKHVKEVYGVEVIPEAVENSKKNAQLNNISNANYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPSLILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y+LK +QPVD+FP T H+ECV LLE
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLLE 449
>gi|419707425|ref|ZP_14234909.1| Putative RNA methyltransferase [Streptococcus salivarius PS4]
gi|383282771|gb|EIC80751.1| Putative RNA methyltransferase [Streptococcus salivarius PS4]
Length = 456
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 128/220 (58%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+++ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 300 SDLTSDS--IVIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAERNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 D-YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Y G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 KRYQELG---------YELKKVQPVDLFPQTHHVEAVSLL 448
>gi|265753522|ref|ZP_06088877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
3_1_33FAA]
gi|423231547|ref|ZP_17217950.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides dorei
CL02T00C15]
gi|423238336|ref|ZP_17219452.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides dorei
CL03T12C01]
gi|423246134|ref|ZP_17227207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides dorei
CL02T12C06]
gi|263235236|gb|EEZ20760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
3_1_33FAA]
gi|392627177|gb|EIY21216.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides dorei
CL02T00C15]
gi|392636766|gb|EIY30646.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides dorei
CL02T12C06]
gi|392648019|gb|EIY41709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides dorei
CL03T12C01]
Length = 473
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 125/200 (62%), Gaps = 12/200 (6%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G ++I E + GL F+I A SF+QTN+ QA LYK+ + AGL G+E+V DL+ GTGTI
Sbjct: 282 GNNHIFEEMEGLRFKIGAKSFYQTNSGQAYNLYKVARNFAGL--TGNELVYDLYTGTGTI 339
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI-GGDFGNAFPKPDI 140
++R K V G E VP+AI DA N+ +N I N F GD+ I +F + +PD+
Sbjct: 340 ANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGDMKDILTQEFISQHGRPDV 399
Query: 141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKS 200
+I+DP R GMH +I +L + RIVYVSCNPAT ARDL L YK+ +
Sbjct: 400 IITDPPRAGMHDDVINTILFAEPQRIVYVSCNPATQARDLSLL---------DAKYKVMA 450
Query: 201 LQPVDMFPHTPHIECVCLLE 220
+QPVDMFPHT H+E V LLE
Sbjct: 451 VQPVDMFPHTHHVENVVLLE 470
>gi|418965024|ref|ZP_13516811.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
constellatus subsp. constellatus SK53]
gi|383343857|gb|EID22029.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
constellatus subsp. constellatus SK53]
Length = 461
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 136/220 (61%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N NT G++ TL+G+ IT+ + FQI+A +F+Q NT AE LY+ D
Sbjct: 249 MQNINDQNTNTIFGKDWQTLHGRDYITDRMLNNDFQIAAPAFYQVNTEMAEKLYQTAIDF 308
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA++N I+N +V
Sbjct: 309 SELAAD--DVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAEINGITNTHYV 366
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ KPD+++ DP R G+ I+ + ++ +I+Y+SCNPAT ARD+
Sbjct: 367 CDSAENAMANWSKQGIKPDVILVDPPRKGLTESFIESSVSMEPKKIIYISCNPATMARDI 426
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G YKLK +QPVD+FP T H+EC+ L++
Sbjct: 427 K-LYQELG-------YKLKKVQPVDLFPQTHHVECIALIQ 458
>gi|386712942|ref|YP_006179264.1| RNA methyltransferase [Halobacillus halophilus DSM 2266]
gi|384072497|emb|CCG43987.1| RNA methyltransferase [Halobacillus halophilus DSM 2266]
Length = 460
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++NVN N +G+E ++G I + + + F IS SF+Q N Q + LY +
Sbjct: 248 VHNVNNQKTNVILGKETKVIWGDEYIYDMIGDIKFMISPKSFYQVNPTQTKNLYDKALEY 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR G E V+D +CG GTI L LA+ K VYG EVVP+A++DA +NA+LN + NA F
Sbjct: 308 ADLR--GGETVIDAYCGIGTISLFLAQKAKKVYGVEVVPEAVTDAKKNARLNKMDNAEFY 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + N +PD+++ DP R G +L+K +L ++ RIVYVSCNP+T ARDL
Sbjct: 366 VGQAEELMPWWRNQGLRPDVIVVDPPRKGCDEELLKAMLDMEPERIVYVSCNPSTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y + +QPVDMFP T H+ECV L
Sbjct: 426 RVLE--------DGGYATQEVQPVDMFPQTSHVECVTYL 456
>gi|326798666|ref|YP_004316485.1| TrmA family RNA methyltransferase [Sphingobacterium sp. 21]
gi|326549430|gb|ADZ77815.1| RNA methyltransferase, TrmA family [Sphingobacterium sp. 21]
Length = 476
Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 131/226 (57%), Gaps = 18/226 (7%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLR------GLTFQISANSFFQTNTHQAEVLYKLI 57
+N +T +E T GK +I E + L F+I A SF+QTN+ QA LY++
Sbjct: 261 INQKKNDTIFDQEIITYAGKDHIFEEMSLPNRSVRLRFKIGAKSFYQTNSEQAYELYRIT 320
Query: 58 EDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNA 117
++ A L+ G E+V DL+ G GTI +A VK V G E VP AI DA N+ +N I N
Sbjct: 321 KEFANLK--GHELVYDLYTGAGTIANFVALDVKQVIGIEYVPSAIEDAKLNSSINGIENT 378
Query: 118 TFVQGDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATC 176
F GD+ + +F KPD++I+DP R GMH +I LL+L+APRIVYVSCN AT
Sbjct: 379 LFFAGDMKDVLTPEFTATHGKPDLIITDPPRAGMHPDVIARLLELEAPRIVYVSCNAATQ 438
Query: 177 ARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
ARDL L Y +K ++PVDMFPHT H+E V LLEL
Sbjct: 439 ARDLALLNEK---------YLVKRIKPVDMFPHTQHVENVVLLELK 475
>gi|365960497|ref|YP_004942064.1| RNA methyltransferase [Flavobacterium columnare ATCC 49512]
gi|365737178|gb|AEW86271.1| RNA methyltransferase [Flavobacterium columnare ATCC 49512]
Length = 470
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 129/218 (59%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T ++ G+ I E + GL F I+A SF+QTN+ QA LY + D AGL
Sbjct: 262 INQKANDTLYDQDIILFKGRDYILEEMEGLQFSINAKSFYQTNSEQAYELYSITRDFAGL 321
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +++ K V G E VP+AISDA NAK NNI+N F GD
Sbjct: 322 --TGNELVYDLYTGTGTIAQFVSKKAKKVVGVEAVPEAISDAKVNAKRNNINNCEFFVGD 379
Query: 124 LNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + D F PDI+I+DP R GMH +++ +L++ ++VYVSCN AT ARDL
Sbjct: 380 MKNVFNDEFIATHGHPDIIITDPPRDGMHADVVEQILRIAPKKVVYVSCNSATQARDLAL 439
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ YK+ ++PVDMFP T H+E V LLE
Sbjct: 440 M---------DKMYKVTRVRPVDMFPQTHHVENVVLLE 468
>gi|254826049|ref|ZP_05231050.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
gi|293595289|gb|EFG03050.1| RNA methyltransferase [Listeria monocytogenes FSL J1-194]
Length = 459
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 127/222 (57%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + N +PD VI DP R G LIK LL ++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVNEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ + PVDMFP T H+E V LL+L
Sbjct: 425 ALLAKK---------YRIRYMHPVDMFPQTAHVETVVLLQLK 457
>gi|425455499|ref|ZP_18835219.1| putative enzyme [Microcystis aeruginosa PCC 9807]
gi|389803609|emb|CCI17485.1| putative enzyme [Microcystis aeruginosa PCC 9807]
Length = 507
Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 124/218 (56%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N GN G + T+ G+ ITE GLT+Q++A++FFQ NT AE L+ LI C
Sbjct: 294 NYNPDRGNAIFGSQTQTIAGRDYITEKFAGLTYQLAADTFFQVNTEAAEALFALI--CQK 351
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EI++D +CG GT L LA+ VK V G E ++ A NA+LNNI+N TF+ G
Sbjct: 352 LELKGEEILIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNNITNTTFILG 411
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K KPDI++ DP R G ++ LL+L++ RIVY+SC AT ARDL Y
Sbjct: 412 AVEKT---LPQLTVKPDIILLDPPRKGCDRSVLDSLLQLQSQRIVYISCQSATLARDLQY 468
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
LC G Y+L +Q D FP TPH+EC L
Sbjct: 469 LCQ-------TGDYQLLEVQTADFFPQTPHVECAAFLR 499
>gi|402831687|ref|ZP_10880364.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
CM59]
gi|402281074|gb|EJU29766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
CM59]
Length = 472
Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 128/219 (58%), Gaps = 12/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T +E +G+ I E + GL F+I+A SFFQTN+ QA LYK+ D A L
Sbjct: 261 INNKPNDTIYDQEVICYHGRDFIYEQMEGLRFKINAKSFFQTNSTQAYELYKVTRDFAAL 320
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI +AR K V G E VP+AI+DA NA+ N I N F GD
Sbjct: 321 --TGEELVYDLYTGTGTIAQFVARKAKKVIGVEAVPEAIADAKENARNNQIDNVEFFVGD 378
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I +F PD++I+DP R GMH ++ +L++ R+VYVSCN AT ARDL
Sbjct: 379 MKNIFNEEFIATHGTPDVIITDPPRDGMHKDVVAQILRIAPQRVVYVSCNSATQARDLAL 438
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
+ Y++ ++PVDMFP T HIE V LL+L
Sbjct: 439 MA---------PMYRVVKIRPVDMFPQTYHIENVALLQL 468
>gi|313898104|ref|ZP_07831643.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
gi|312957132|gb|EFR38761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. HGF2]
Length = 444
Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 127/217 (58%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N N +G++E L+G+ IT+++ L F IS+ SF+Q N Q E+LY + A
Sbjct: 233 NLNVRDDNVILGDKEQLLFGERAITDSIHDLKFSISSKSFYQVNPRQTEILYGKALEFAK 292
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E VLDL+CG GTI + LA+ KHV G E+VPQAI DA +NA LN I+N FV
Sbjct: 293 L--TGKETVLDLYCGVGTISMFLAQRAKHVTGIEIVPQAIRDARKNAALNGIANIEFVCS 350
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
D PD+++ DP R G + I ++ ++ RIVYVSC+P T ARDL
Sbjct: 351 DAADYAKKLCEQGAHPDVIVVDPPRKGCDAQTIDSMVMMQPKRIVYVSCDPGTLARDLKL 410
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L KG Y+ + +QP+DMFP T H+E VCLL
Sbjct: 411 L-------EEKG-YRTEIVQPLDMFPFTHHVETVCLL 439
>gi|304406301|ref|ZP_07387958.1| RNA methyltransferase, TrmA family [Paenibacillus curdlanolyticus
YK9]
gi|304344885|gb|EFM10722.1| RNA methyltransferase, TrmA family [Paenibacillus curdlanolyticus
YK9]
Length = 513
Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 125/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G+E TL+G I + L G+ F ISA SF+Q N Q LY+ D
Sbjct: 298 VQNVNTRDTNVIFGDETRTLWGSDVIYDELDGIRFAISARSFYQVNPSQTVALYRKAVDY 357
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G+E V+D +CG GTI L LAR VYG EVVP+AI DA RNA+LN I+NA F
Sbjct: 358 AGL--TGAETVIDAYCGIGTISLFLARKAGRVYGVEVVPEAIEDAKRNAELNGIANAEFE 415
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + D+++ DP R G L+ ++++K R+VYVSCNP+T ARDL
Sbjct: 416 AGLSEVVIPRWREEGIAADVIVVDPPRKGCDAALLDTIIRMKPERVVYVSCNPSTLARDL 475
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y+ + PVDMFP T H+E V LL
Sbjct: 476 RVLE--------DGGYRTVEVTPVDMFPWTVHVENVALL 506
>gi|423363238|ref|ZP_17340737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD022]
gi|401076330|gb|EJP84686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus cereus VD022]
Length = 459
Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 128/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLSF 457
>gi|354584477|ref|ZP_09003372.1| RNA methyltransferase, TrmA family [Paenibacillus lactis 154]
gi|353196862|gb|EHB62363.1| RNA methyltransferase, TrmA family [Paenibacillus lactis 154]
Length = 539
Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 10/214 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N + GE TL+G N+ E+L L F +S +FFQ N Q LY+ + AG
Sbjct: 328 NINPKKTSLIFGERTITLWGAENMQESLSDLQFALSPRAFFQLNPQQTVKLYESVRAAAG 387
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V+D +CGTGTIGL LA + K + G E +P+A+ DAC NA+ N +NA+F G
Sbjct: 388 L--TGQETVIDAYCGTGTIGLWLAPYAKEIRGIEAIPEAVEDACINAQRNGRTNASFHVG 445
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + +PD++I+DP R G+ + ++ +L+ K R VYVSCNP+T A+D
Sbjct: 446 QAEELLPRWVKDGLRPDVIIADPPRTGLDPRFLETILRTKPKRFVYVSCNPSTLAKDCKV 505
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 216
L + G Y++ +QPVDMFP T H+ECV
Sbjct: 506 L--------LDGGYEIDWVQPVDMFPQTSHVECV 531
>gi|212693125|ref|ZP_03301253.1| hypothetical protein BACDOR_02632 [Bacteroides dorei DSM 17855]
gi|212664230|gb|EEB24802.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides dorei DSM
17855]
Length = 473
Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/200 (47%), Positives = 124/200 (62%), Gaps = 12/200 (6%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G +I E + GL F+I A SF+QTN+ QA LYK+ + AGL G+E+V DL+ GTGTI
Sbjct: 282 GNDHIFEEMEGLRFKIGAKSFYQTNSGQAYNLYKVARNFAGL--TGNELVYDLYTGTGTI 339
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI-GGDFGNAFPKPDI 140
++R K V G E VP+AI DA N+ +N I N F GD+ I +F + +PD+
Sbjct: 340 ANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGDMKDILTQEFISQHGRPDV 399
Query: 141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKS 200
+I+DP R GMH +I +L + RIVYVSCNPAT ARDL L YK+ +
Sbjct: 400 IITDPPRAGMHDDVINTILFAEPQRIVYVSCNPATQARDLSLL---------DAKYKVMA 450
Query: 201 LQPVDMFPHTPHIECVCLLE 220
+QPVDMFPHT H+E V LLE
Sbjct: 451 VQPVDMFPHTHHVENVVLLE 470
>gi|347549101|ref|YP_004855429.1| putative RNA methyltransferase [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982172|emb|CBW86166.1| Putative similar to RNA methyltransferase [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 459
Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 125/222 (56%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + GEE + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSIIFGEETFLLAGKESIHEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G + +P++I DA RNA+ N + N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD VI DP R G LI LL+ +A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVFPKWMKEGFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LLEL
Sbjct: 425 ALLAKK---------YRVRYMQPVDMFPQTAHVETVVLLELK 457
>gi|339637206|emb|CCC16097.1| uncharacterized RNA methyltransferase lp_1151 [Lactobacillus
pentosus IG1]
Length = 458
Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 127/221 (57%), Gaps = 11/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +G L GKS I + L GLTF ISA SF+Q N Q E LY+L D
Sbjct: 244 IQNVNSKKTNVILGPVNNVLAGKSTIDDQLLGLTFAISAQSFYQVNPQQTEKLYQLAIDR 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G+E V+D + G GTI LT+A+ K VYG E+VP AI +A +NA N I+NA FV
Sbjct: 304 AGL--TGNETVIDAYSGIGTISLTMAQHAKQVYGVEIVPAAIDNARQNADKNGITNAKFV 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ R+VY+SCNP+T RD+
Sbjct: 362 LDSAEKAMAKWQADGIKPDVIVVDPPRKGLDAGFIKSAGEMAPKRVVYISCNPSTLVRDV 421
Query: 181 DYLCHGVGDQNIKGCYKLKS-LQPVDMFPHTPHIECVCLLE 220
+ Y++ + +QPVD FP TPHIE V +LE
Sbjct: 422 QRFA--------EYGYQISAPVQPVDQFPQTPHIESVTVLE 454
>gi|319954120|ref|YP_004165387.1| 23S rRNA m(5)u-1939 methyltransferase [Cellulophaga algicola DSM
14237]
gi|319422780|gb|ADV49889.1| 23S rRNA m(5)U-1939 methyltransferase [Cellulophaga algicola DSM
14237]
Length = 472
Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 127/218 (58%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN +T +E G+ +I E + GL F+I+A SF+QTN+ QA LYK+ D AGL
Sbjct: 263 VNEKQNDTIYDQEIVCFAGRDHIFEEMEGLKFKINAKSFYQTNSDQAYELYKITRDFAGL 322
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +A+ K V G E VP+AI DA NA N I N +F GD
Sbjct: 323 T--GNELVYDLYTGTGTIAQFVAKKAKKVVGIEAVPEAIEDAKANAIFNKIENTSFFAGD 380
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I +F PDI+I+DP R GMH ++ +L + ++VYVSCN AT ARDL+
Sbjct: 381 MKNIFNEEFIRENGTPDIIITDPPRDGMHKDVVAQILAIAPQKVVYVSCNSATQARDLEL 440
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ K YK+ Q VDMFP T H+E V LLE
Sbjct: 441 M---------KDDYKITKTQAVDMFPQTHHVENVVLLE 469
>gi|430949111|ref|ZP_19486030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1576]
gi|430557956|gb|ELA97392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1576]
Length = 457
Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA N+ N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNSLNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
L K Y +K +QPVD+FP T HIE V
Sbjct: 423 KLLA--------KAGYVVKKVQPVDLFPQTHHIELVA 451
>gi|298208283|ref|YP_003716462.1| RNA methyltransferase [Croceibacter atlanticus HTCC2559]
gi|83848204|gb|EAP86074.1| putative RNA methyltransferase [Croceibacter atlanticus HTCC2559]
Length = 470
Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 129/215 (60%), Gaps = 13/215 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
GN ++ ++ Y G+ +I E + GL F+I+A SF+QTN+ QA LYK+ + A L G
Sbjct: 266 GNDTIYDQNVICYTGRDHIFEEMEGLKFKINAKSFYQTNSKQAYNLYKITREFADL--SG 323
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
E+V DL+ GTGTI +A+ K V G E VP+AI DA +NA+ N I+N F GD+ +
Sbjct: 324 DELVYDLYTGTGTIAQFVAKKAKKVVGIESVPEAIEDAKKNAQFNEINNVDFFAGDMKHV 383
Query: 128 -GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
+F +PDI+I+DP R GMH ++ +L +K RIVYVSCN AT ARDL+ +
Sbjct: 384 FSQEFIEEHGQPDIIITDPPRDGMHKDVVAQILNIKPKRIVYVSCNSATQARDLELM--- 440
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
YK+ Q VDMFP T H+E V LEL
Sbjct: 441 ------NAYYKVTKTQAVDMFPQTHHVENVVCLEL 469
>gi|328957913|ref|YP_004375299.1| putative RNA methyltransferase [Carnobacterium sp. 17-4]
gi|328674237|gb|AEB30283.1| putative RNA methyltransferase [Carnobacterium sp. 17-4]
Length = 458
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N +G++ LYG+ +TL G TF+IS SF+Q N Q E LY+ + D
Sbjct: 247 VQNVNPKHTNVILGDDAIVLYGEDKFRDTLLGNTFEISHRSFYQVNPLQTEKLYQTVLDF 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D + G GTI LTLA+ KHVYG E++ A+ +A NA+LNNI N TF
Sbjct: 307 AEL--TGEETVIDAYSGIGTITLTLAKNAKHVYGIEIIEPAVENAKANAELNNIENVTFE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + D+++ DP R G+ + + ++ +K ++VYVSCNPAT ARDL
Sbjct: 365 AGAAEEVMVQWSEEGRTADLLVVDPPRKGLEKEFTEAVIAMKPTKMVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y +K +QPVD+FP T H+E V LL
Sbjct: 425 ALLT--------EGGYTVKKVQPVDLFPQTTHVESVTLL 455
>gi|392966074|ref|ZP_10331493.1| RNA methyltransferase, TrmA family [Fibrisoma limi BUZ 3]
gi|387845138|emb|CCH53539.1| RNA methyltransferase, TrmA family [Fibrisoma limi BUZ 3]
Length = 480
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 131/223 (58%), Gaps = 17/223 (7%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETL-----RGLTFQISANSFFQTNTHQAEVLYKLIE 58
+NT ++ +E G I E + R LTF++ SF+QTN QA LYK+
Sbjct: 267 INTKKNDSYQDQEVINFAGTPYIEEQMDDGSGRPLTFRVGPKSFYQTNAQQAFNLYKITR 326
Query: 59 DCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT 118
D AGL GSE V DL+ GTGTI L +AR +HV G E V +++DA NA +N I+N T
Sbjct: 327 DWAGL--TGSERVYDLYTGTGTIALFVARQAQHVVGVEYVEASVADARINASVNGITNTT 384
Query: 119 FVQGDLNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCA 177
FV GD+ I D F + +P++VI+DP R GM ++ LLK RIVYVSCN AT A
Sbjct: 385 FVAGDMRDILTDGFFDKHGRPEVVITDPPRAGMDEAVVGQLLKAAPDRIVYVSCNTATQA 444
Query: 178 RDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
RDL++L G Y + +QPVDMFPHT H+E V LL+
Sbjct: 445 RDLNWLDEG---------YTVADVQPVDMFPHTHHVENVVLLK 478
>gi|227363773|ref|ZP_03847880.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
reuteri MM2-3]
gi|325682984|ref|ZP_08162500.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
MM4-1A]
gi|227071130|gb|EEI09446.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
reuteri MM2-3]
gi|324977334|gb|EGC14285.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus reuteri
MM4-1A]
Length = 480
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 125/220 (56%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G + TL+G I + L G+ F IS SF+Q N Q E LY+ D
Sbjct: 265 VQNINDKRTNRLLGNKNKTLWGADEIHDQLLGIDFAISPLSFYQVNPQQTERLYQTAIDN 324
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL DG++ V+D +CG GTI L +A+ K VYG E+VP AI DA NAK N I NA FV
Sbjct: 325 AGL--DGNQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNGIKNAKFV 382
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD+VI DP R G+ LI+ K+ +++YVSCNPAT RD+
Sbjct: 383 VGKAEEQFAKWQAEGLKPDVVIVDPPRKGLAESLIEATGKMGPKKVIYVSCNPATLVRDI 442
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
DQ G + K +QPVD FP T H+E V +LE
Sbjct: 443 KRFA----DQ---GYHVTKPIQPVDQFPQTTHVESVTVLE 475
>gi|402812938|ref|ZP_10862533.1| RNA methyltransferase, TrmA family [Paenibacillus alvei DSM 29]
gi|402508881|gb|EJW19401.1| RNA methyltransferase, TrmA family [Paenibacillus alvei DSM 29]
Length = 549
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 129/218 (59%), Gaps = 10/218 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
++NT N +G++ L+G IT+ + + F+ISA SF+Q N Q EVLY+ + A
Sbjct: 339 QSINTKRTNVIMGDKTRVLWGSEYITDYIGDIAFKISARSFYQVNPVQTEVLYEKAVEYA 398
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E V+D +CG GTI L LA+ K V G E+V +AI+DA RNA+LN ++NA F
Sbjct: 399 GL--TGNETVIDAYCGIGTISLFLAQRAKRVLGVEIVEEAIADARRNAELNGVTNAEFAV 456
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + PD+++ DP R G L++ +L + RIVYVSCNP+T ARDL
Sbjct: 457 GAAEDVIPRWKEQGVTPDVIVVDPPRKGCDPALLETMLAMCPERIVYVSCNPSTLARDLQ 516
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y++ +QPVDMFP T H+E V LL
Sbjct: 517 VLA--------GGGYRIVEVQPVDMFPQTTHVESVALL 546
>gi|239825905|ref|YP_002948529.1| TrmA family RNA methyltransferase [Geobacillus sp. WCH70]
gi|239806198|gb|ACS23263.1| RNA methyltransferase, TrmA family [Geobacillus sp. WCH70]
Length = 459
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 129/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G+E L+G I + + + F ISA SF+Q N Q +VLY+ +
Sbjct: 246 IQNINPKKTNVIMGDETKVLWGAEYIYDYIGDIKFAISARSFYQVNPEQTKVLYEKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ K VYG EVVP+AI DA RNA+LN I+N F
Sbjct: 306 AQL--TGKETVIDAYCGIGTISLFLAKKAKKVYGVEVVPEAIEDAKRNAELNGITNVEFA 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + + D ++ DP R G L++ ++ +K R+VYVSCNPAT ARDL
Sbjct: 364 IGEAEAVIPKWYEQGIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G G Q I+ +QPVDMFPHT H+ECV L L
Sbjct: 424 RILEDG-GYQTIE-------VQPVDMFPHTAHVECVSRLVLK 457
>gi|400290035|ref|ZP_10792062.1| putative RNA methyltransferase [Streptococcus ratti FA-1 = DSM
20564]
gi|399920826|gb|EJN93643.1| putative RNA methyltransferase [Streptococcus ratti FA-1 = DSM
20564]
Length = 451
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG I +T+ G F ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNSNAIFGPEFRTLYGVDTIEDTMLGNRFAISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++V+D + G GTIGL+ A+ VK VYG EVV A+ DA +NA LN I+NA +V
Sbjct: 300 SELTAD--DVVIDAYSGIGTIGLSFAKQVKAVYGVEVVEAAVRDAQKNAALNKITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ KPD+++ DP R G+ IK ++ +I Y+SCNPAT ARD+
Sbjct: 358 ADSAENAMANWSKQGIKPDVILVDPPRKGLSQSFIKASAAMQPKKITYISCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKL +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYEELG-------YKLTKVQPVDLFPQTHHVECVSLL 448
>gi|374600331|ref|ZP_09673333.1| 23S rRNA m(5)U-1939 methyltransferase [Myroides odoratus DSM 2801]
gi|423326070|ref|ZP_17303910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CIP 103059]
gi|373911801|gb|EHQ43650.1| 23S rRNA m(5)U-1939 methyltransferase [Myroides odoratus DSM 2801]
gi|404604738|gb|EKB04355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CIP 103059]
Length = 470
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 129/216 (59%), Gaps = 13/216 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
N ++ +++ LY G+ I E + GL F I+A SF+QTN+ QA LYK+ D A L G
Sbjct: 266 ANDTIYDQDVVLYKGRDYILEEMEGLKFSINAKSFYQTNSDQAYELYKITRDYAEL--TG 323
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127
+E+V DL+ GTGTI +++ K V G E VP+AI+DA NA+ N I+N F GD+ +
Sbjct: 324 NELVFDLYTGTGTIAQFVSKKAKKVVGVEAVPEAIADAKINAERNGITNCDFFVGDMKNV 383
Query: 128 GGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
D F PD++I+DP R GMH ++ LLK+ RIVYVSCN AT ARDL L
Sbjct: 384 FNDEFIATHGHPDVIITDPPRDGMHKDVVDMLLKVAPKRIVYVSCNSATQARDLALL--- 440
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
YK+ ++PVDMFP T H+E V LEL
Sbjct: 441 ------DAKYKVTKVRPVDMFPQTHHVENVVQLELK 470
>gi|429765172|ref|ZP_19297473.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium celatum
DSM 1785]
gi|429186793|gb|EKY27726.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium celatum
DSM 1785]
Length = 459
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 131/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +GE+ TL+G+ I++ + F IS SFFQ N Q EVLY +
Sbjct: 247 IQNVNSKPTNVILGEKCITLWGEPTISDYIDKFRFNISPLSFFQVNPIQTEVLYGKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E V D +CGTGTI L L++ K VYG E++PQAI +A NA+ NN+ N F
Sbjct: 307 AGLT--GDETVFDAYCGTGTITLFLSQKAKKVYGVEIIPQAIENANINARENNVDNVEFF 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + D N+ K D+V+ DP R G +KL+ + + A RIVYVSC+P+T ARDL
Sbjct: 365 VGESEVVIPDLINSGVKADVVVVDPPRKGCDIKLLNAITNIDAERIVYVSCDPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L ++N YK +QPVDMFPHT HIE V LL
Sbjct: 425 AIL-----EEN---GYKTIEVQPVDMFPHTAHIENVALL 455
>gi|308172559|ref|YP_003919264.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens DSM
7]
gi|384158236|ref|YP_005540309.1| RNA methyltransferase, TrmA family protein [Bacillus
amyloliquefaciens TA208]
gi|384163113|ref|YP_005544492.1| trmA family RNA methyltransferase [Bacillus amyloliquefaciens LL3]
gi|384167276|ref|YP_005548654.1| RNA methyltransferase [Bacillus amyloliquefaciens XH7]
gi|307605423|emb|CBI41794.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens DSM
7]
gi|328552324|gb|AEB22816.1| RNA methyltransferase, TrmA family protein [Bacillus
amyloliquefaciens TA208]
gi|328910668|gb|AEB62264.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens LL3]
gi|341826555|gb|AEK87806.1| putative RNA methyltransferase [Bacillus amyloliquefaciens XH7]
Length = 458
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 128/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGNETSVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELQ--GKETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++++K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIIEMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y+ +QPVDMFPHT H+ECV LEL
Sbjct: 425 RVLE--------DGGYQTLEVQPVDMFPHTNHVECVAKLELK 458
>gi|363894293|ref|ZP_09321381.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium ACC19a]
gi|361962624|gb|EHL15736.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium ACC19a]
Length = 454
Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 131/223 (58%), Gaps = 15/223 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N + ++ LYG+ I + + LTF I NSF+Q N+ Q E +YK D
Sbjct: 240 VQNVNTKKTNVILSDKNILLYGREYIQDMIENLTFNIYPNSFYQVNSIQMEKMYKRALDY 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G+E V DL+CG GTI L L++ K VYG EVVPQAI A +NAK+NNI NA F+
Sbjct: 300 ANLQ--GTETVYDLYCGIGTITLLLSQKCKKVYGIEVVPQAIESAKQNAKINNIENAKFI 357
Query: 121 QGDLNKIGGDFGNAFPK---PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCA 177
G K+ + N K P++++ DP R G K++ +L +K +I+Y+SCNP+T A
Sbjct: 358 CG---KVEDEIENLVAKSNIPNVIVLDPARKGCEEKVLDTILNVKPEKIIYISCNPSTLA 414
Query: 178 RDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
RDL L Y+LK + P D+F HT HIE V L+
Sbjct: 415 RDLKKLLSTQE-------YELKEVTPYDLFSHTMHIESVIFLK 450
>gi|299535232|ref|ZP_07048556.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1]
gi|424740328|ref|ZP_18168729.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZB2]
gi|298729353|gb|EFI69904.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1]
gi|422946145|gb|EKU40564.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZB2]
Length = 455
Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 128/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN+ N G++ L+GK I +T+ + F+ISA SF+Q N Q EVLYK D
Sbjct: 243 MQNVNSEKTNVIFGDDTINLWGKDVIIDTIGDVRFEISARSFYQVNPEQTEVLYKQALDY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K V G E+VPQAI DA RNA LN +N F
Sbjct: 303 ADLQ--GDERVIDAYCGIGTISLFLAQKAKTVMGVEIVPQAIEDAKRNALLNGFTNTYFE 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + + D+++ DP R G L+ +L+ + R+VYVSCNPAT ARDL
Sbjct: 361 AGPAEEVIPRWYKEGKEADVLVVDPPRKGCDEALLTTILEQRPKRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y + +QPVDMFPH+ H E V L+L+
Sbjct: 421 RILE--------DGGYHTQEIQPVDMFPHSTHCEAVAWLKLN 454
>gi|357037169|ref|ZP_09098969.1| RNA methyltransferase, TrmA family [Desulfotomaculum gibsoniae DSM
7213]
gi|355361334|gb|EHG09089.1| RNA methyltransferase, TrmA family [Desulfotomaculum gibsoniae DSM
7213]
Length = 455
Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 131/216 (60%), Gaps = 11/216 (5%)
Query: 7 SVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDD 66
+ G +VG + TL G+ I + + GL F+ISA SF+Q N Q VLY+ D L+
Sbjct: 246 ATGKKTVGRYQ-TLAGRGYIEDEIDGLRFRISAASFYQVNPSQTAVLYRKALDYCSLQ-- 302
Query: 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK 126
G E V D +CG GTI L +AR+ K V GYEVVP A+ DA NA LN I NA F G + +
Sbjct: 303 GHEEVADAYCGVGTIALYVARYAKTVRGYEVVPGAVRDAEANAALNGIKNARFFAGAVER 362
Query: 127 IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
+ + + P++V+ DP R G H +++ L + A R+VYVSC+PAT ARD+ YL H
Sbjct: 363 VLMEHVDKGYHPEVVVLDPPRSGCHPEVLDALAQSGARRVVYVSCDPATLARDVGYL-HR 421
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
+G + L+ +QPVDMFPHT H+ECV ++ S
Sbjct: 422 LG-------FMLQEVQPVDMFPHTGHVECVIMMTYS 450
>gi|168178950|ref|ZP_02613614.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
gi|182670032|gb|EDT82008.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
Length = 461
Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 130/220 (59%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N +GE+ TL+GK IT+ + F IS SFFQ N Q EVLYK +
Sbjct: 248 IQNINTKKTNVILGEKCITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G EIV D +CGTGTI L L++ K VYG E++ +AI +A NAK N I NA F
Sbjct: 308 ANLK--GEEIVFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFF 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ D + K ++V+ DP R G L++ + K RIVYVSC+P T ARDL
Sbjct: 366 VGKSEEVIPDLIDKGIKAEVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G+G Y+ K +QPVDMFP T H+E + L++
Sbjct: 426 GIL-NGLG-------YETKEVQPVDMFPQTSHVETIVLIQ 457
>gi|422419317|ref|ZP_16496272.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
N1-067]
gi|313632900|gb|EFR99843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria seeligeri FSL
N1-067]
Length = 459
Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 125/222 (56%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + GEE + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSIIFGEETFLLAGKESIHEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G + +P++I DA RNA+ N + N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFASKVKEVRGMDTIPESIEDAKRNAEKNGLENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD VI DP R G LI LL+ +A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVFPKWMKEGFKPDAVIVDPPRSGCDQGLIGSLLQAEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y+++ +QPVDMFP T H+E V LLEL
Sbjct: 425 ALLAKK---------YRVRYMQPVDMFPQTAHVETVVLLELK 457
>gi|418413115|ref|ZP_12986359.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis BVS058A4]
gi|410879404|gb|EKS27251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis BVS058A4]
Length = 472
Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 121/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L +T+ IS SF+Q N+ Q E LY+ + A
Sbjct: 260 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSAQTEKLYQQALNYA 319
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 320 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 377
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 378 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQLRDAQ 437
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 438 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 466
>gi|333896487|ref|YP_004470361.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111752|gb|AEF16689.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 453
Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 130/217 (59%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVN S G +G E +YG IT+ + F+IS SFFQ N Q +VLY+ + A
Sbjct: 243 NVNRSNGKQVMGNENIVIYGDDYITDFIGDKKFEISPLSFFQVNPVQTKVLYEKALEYAD 302
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G EIV D++CG GTI + A+ + VYG EV+P A+ DA +NA +N ++NA F+ G
Sbjct: 303 LK--GDEIVFDVYCGIGTISIFFAKHARKVYGIEVIPDAVEDARQNAAINGVNNAEFIAG 360
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
I + N KPD+++ DP R G+ +++ +K+ +I+YVSCNP T ARDL
Sbjct: 361 KAEDIMIELCNKGLKPDVIVFDPPRKGLDKDVVEASIKMNPEKIIYVSCNPTTLARDLR- 419
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ + N Y+ K +QPVDMFP+T H+ECV L+
Sbjct: 420 ----IFEDN---GYRTKKVQPVDMFPYTYHVECVVLM 449
>gi|418976548|ref|ZP_13524416.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK575]
gi|383351300|gb|EID29106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK575]
Length = 452
Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 135/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G +QI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWCTLYGQDFITDQMLGNDYQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A++VK VYG EV+P+A+ ++ +NA+LN+ISNA +V
Sbjct: 300 AALKSD--DVVIDAYSGIGTIGLSVAKYVKEVYGVEVIPEAVENSKKNAQLNHISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RIVY+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPSVILVDPPRKGLTESFIKASAQTGADRIVYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLL 448
>gi|408789980|ref|ZP_11201614.1| RNA methyltransferase, TrmA family [Lactobacillus florum 2F]
gi|408520719|gb|EKK20753.1| RNA methyltransferase, TrmA family [Lactobacillus florum 2F]
Length = 456
Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 99/218 (45%), Positives = 128/218 (58%), Gaps = 9/218 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVN S GN +G++ Y L G+ IT+ + G F IS SF+Q N Q E LY+ + D A
Sbjct: 246 NVNHSHGNRLLGDKTYLLAGQETITDEILGTKFMISPLSFYQVNPVQTERLYQQVLDKAA 305
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ D ++V+D +CG G+I L LA VKHVYG +VV AI+DA NAKLN I N TFV
Sbjct: 306 LQPD--DLVIDAYCGIGSISLVLAPKVKHVYGVDVVAAAITDAKANAKLNGIDNVTFVTN 363
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ P++V+ DP R G+ LI +L +K R+VYVSCNPAT RD
Sbjct: 364 KAEDQLAKWEADGLHPNVVVVDPPRRGLDASLINSVLAMKPERLVYVSCNPATLVRDA-R 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L H G NIK + +QPVD FP TPH+E V + E
Sbjct: 423 LLHD-GGYNIK-----QPVQPVDQFPQTPHVESVTVFE 454
>gi|386820572|ref|ZP_10107788.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Joostella marina DSM
19592]
gi|386425678|gb|EIJ39508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Joostella marina DSM
19592]
Length = 469
Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 18/221 (8%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN +T +E G+ +I E + GL F+I+A SF+QTN+ QA LYK+ + A L
Sbjct: 261 VNQKPNDTIYDQEVVCYSGRDHIFEEMEGLKFKINAKSFYQTNSEQAYELYKITRNFADL 320
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI +A+ K V G E VP+AI DA NA+LN I N TF GD
Sbjct: 321 --SGDELVYDLYTGTGTIAQFVAKKAKKVVGVEAVPEAIEDAKANAQLNGIENVTFYAGD 378
Query: 124 LNKIGGDFGNAFPK----PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
+ + F F K PD++I+DP R GMH +++ +L + ++VYVSCN AT ARD
Sbjct: 379 MKDV---FNAKFIKDNGSPDVIITDPPRDGMHKDVVQQILNIAPNKVVYVSCNSATQARD 435
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L + YK+ +QPVDMFP T H+E V LLE
Sbjct: 436 LALM---------DSMYKVTKVQPVDMFPQTHHVENVVLLE 467
>gi|121533508|ref|ZP_01665336.1| RNA methyltransferase, TrmA family [Thermosinus carboxydivorans
Nor1]
gi|121308067|gb|EAX48981.1| RNA methyltransferase, TrmA family [Thermosinus carboxydivorans
Nor1]
Length = 462
Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 124/221 (56%), Gaps = 12/221 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +GEE ++GK IT+ L G FQISA SFFQ NT Q LY +
Sbjct: 248 VQNINPKRTNVILGEETSVIWGKETITDRLGGFVFQISARSFFQVNTEQTVRLYNKAVEY 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E +D +CGTGTI L LA+ VYG EVV A+ DA NA+ N + N F+
Sbjct: 308 AGL--TGVETAIDAYCGTGTITLFLAKRAAKVYGIEVVEPAVRDAWLNARRNGVDNVDFI 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD + + +P ++ DP R G ++++ ++++ RIVYVSCNPA+ ARDL
Sbjct: 366 VGDAVDVMPKLYKSGVRPQAIVVDPPRAGCDRRVLETFVRMQPDRIVYVSCNPASLARDL 425
Query: 181 DYLCHGVGDQNIKGC-YKLKSLQPVDMFPHTPHIECVCLLE 220
L C Y + +QPVDMFP T HIECV L+
Sbjct: 426 AVLAE---------CGYMTREIQPVDMFPQTSHIECVVSLK 457
>gi|394992876|ref|ZP_10385645.1| putative RNA methyltransferase [Bacillus sp. 916]
gi|393806317|gb|EJD67667.1| putative RNA methyltransferase [Bacillus sp. 916]
Length = 459
Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 128/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELQ--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++ +K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIIDMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y+ +QPVDMFPHT H+ECV LL+L
Sbjct: 425 RVLE--------DGGYQTLEVQPVDMFPHTNHVECVALLKL 457
>gi|331266416|ref|YP_004326046.1| SAM-dependent methyltransferase [Streptococcus oralis Uo5]
gi|326683088|emb|CBZ00705.1| SAM-dependent methyltransferase related to tRNA
(uracil-5-)-methyltransferase [Streptococcus oralis Uo5]
Length = 452
Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 133/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQIS +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNDFQISGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR+D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA+LN ISNA +V
Sbjct: 300 AELRED--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAELNGISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y+L+ +QPVD+FP T H+ECV LE
Sbjct: 418 K-LYQELG-------YELRKVQPVDLFPQTHHVECVSYLE 449
>gi|325269116|ref|ZP_08135736.1| TrmA family RNA methyltransferase [Prevotella multiformis DSM
16608]
gi|324988503|gb|EGC20466.1| TrmA family RNA methyltransferase [Prevotella multiformis DSM
16608]
Length = 474
Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 131/222 (59%), Gaps = 13/222 (5%)
Query: 1 MNNVNTSVGNTSVGEEEY-TLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIED 59
++ V+ GN + + + T G I ET+ L F++ SF+QTNT QA LY + +
Sbjct: 262 LSYVDNQKGNDTFNDLDLITFKGNDYIFETMEDLKFKVGPKSFYQTNTEQAYHLYSVARE 321
Query: 60 CAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATF 119
A L G E+V DL+ GTGTI +A + V G E VP+AI DA N+++NNISN F
Sbjct: 322 FASLT--GDELVYDLYTGTGTIANFVAGKARKVIGIEYVPEAIEDAKVNSEINNISNTLF 379
Query: 120 VQGDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR 178
GD+ I DF + +PD++I+DP R GMH +I +L RIVYVSCNPAT AR
Sbjct: 380 YAGDMKDILTEDFISRQGRPDVIITDPPRAGMHPDVINVILGASPERIVYVSCNPATQAR 439
Query: 179 DLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
DL L Y++ ++QPVDMFPHTPH+E V LLE
Sbjct: 440 DLALL---------DADYQVAAVQPVDMFPHTPHVENVVLLE 472
>gi|322376702|ref|ZP_08051195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
M334]
gi|321282509|gb|EFX59516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
M334]
Length = 451
Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 133/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E +TLYG+ IT+ + G +QIS +F+Q NT AE LY+ D
Sbjct: 240 MQNINDKNTNAIFGKEWHTLYGQDFITDQMLGNDYQISGPAFYQVNTKMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AALKSD--DVVIDAYSGIGTIGLSVAKLVKEVYGVEVIPEAVENSEKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKSWLKDGIQPSLILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYRELG-------YELKKVQPVDLFPQTHHVECVALL 448
>gi|325859605|ref|ZP_08172738.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
CRIS 18C-A]
gi|325482885|gb|EGC85885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
CRIS 18C-A]
Length = 478
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 128/219 (58%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + + + ++ G +I ET+ L F++ SF+QTNT QA LY + A
Sbjct: 265 VDNQKGNDTFNDLDLIVFKGNDHIFETMEDLKFKVGPKSFYQTNTEQAYHLYSVARTFAA 324
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+V DL+ GTGTI +AR + V G E VP+AI DA NA++N I N F G
Sbjct: 325 LT--GNELVYDLYTGTGTIANFIARDARKVIGIEYVPEAIEDAKVNAEINKIDNTLFYAG 382
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I DF PD++I+DP R GMH +I +L RIVYVSCNPAT ARDL
Sbjct: 383 DMKDILTEDFICRHGHPDVIITDPPRAGMHQDVISVILGASPKRIVYVSCNPATQARDLA 442
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Y++ ++QPVDMFPHTPH+E V LLE
Sbjct: 443 LL---------DADYRVAAVQPVDMFPHTPHVENVVLLE 472
>gi|260912576|ref|ZP_05919108.1| TrmA family RNA methyltransferase [Prevotella sp. oral taxon 472
str. F0295]
gi|260633341|gb|EEX51499.1| TrmA family RNA methyltransferase [Prevotella sp. oral taxon 472
str. F0295]
Length = 502
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/204 (47%), Positives = 124/204 (60%), Gaps = 12/204 (5%)
Query: 18 YTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCG 77
+ G +I E + L F++ SF+QTNT QA LY + A L G+E V DL+ G
Sbjct: 307 HVFKGNGHIFEVMEDLRFKVGPKSFYQTNTQQAYHLYDVARRFASL--SGTETVYDLYTG 364
Query: 78 TGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD-FGNAFP 136
TGTI +AR K V G E VP+AI DA N++LN ISN TF GD+ I D F
Sbjct: 365 TGTIANFVARQAKKVVGVEYVPEAIEDAKVNSELNGISNTTFYAGDMKDILNDEFIANNG 424
Query: 137 KPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCY 196
+PD++I+DP R GMH +I+ +++ RIVYVSCNPAT ARDL L D+ Y
Sbjct: 425 QPDVIITDPPRAGMHADVIETIIRANPQRIVYVSCNPATQARDLIAL-----DER----Y 475
Query: 197 KLKSLQPVDMFPHTPHIECVCLLE 220
+ ++QPVDMFPHTPH+E V LLE
Sbjct: 476 AVTAVQPVDMFPHTPHVENVVLLE 499
>gi|322517118|ref|ZP_08070002.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis
ATCC 49124]
gi|322124268|gb|EFX95779.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus vestibularis
ATCC 49124]
Length = 452
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 128/220 (58%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+++ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNTNAIFGKEFRTLYGQDTITDSMLGNDYEISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D IV+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 300 SDLNSDS--IVIDAYSGIGTIGLSFAKQVKEVYGVEVIETAVEDAKKNAECNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 D-YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Y G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 KRYQELG---------YELKKVQPVDLFPQTHHVEVVSLL 448
>gi|425469189|ref|ZP_18848148.1| putative enzyme [Microcystis aeruginosa PCC 9701]
gi|389883106|emb|CCI36501.1| putative enzyme [Microcystis aeruginosa PCC 9701]
Length = 455
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 125/218 (57%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N GN G + T+ G+ ITE GLT+Q++A++FFQ NT AE L+ +I C
Sbjct: 242 NYNPERGNAIFGTQTTTIAGRDYITEKFAGLTYQLAADTFFQVNTEAAEALFAVI--CQK 299
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EI++D +CG GT L LA+ VK V G E ++ A NA+LNNI+N TF+ G
Sbjct: 300 LDLKGEEILIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNNITNTTFILG 359
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K KPDI++ DP R G ++ LL+L++ RIVY+SC AT ARDL Y
Sbjct: 360 AVEKT---LPQLTVKPDIILLDPPRKGCDRSVLDSLLQLQSQRIVYISCQSATLARDLQY 416
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
LC G Y+L +Q D FP TPH+ECV L
Sbjct: 417 LCK-------TGDYQLLEVQTADFFPQTPHVECVAFLR 447
>gi|419777531|ref|ZP_14303443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
intermedius SK54]
gi|383845011|gb|EID82421.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
intermedius SK54]
Length = 480
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 135/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N NT G++ TL+G+ IT+ + FQI+A +F+Q NT AE LY+ D
Sbjct: 269 MQNINDQNTNTIFGKDWRTLHGRDYITDRMLNNDFQIAAPAFYQVNTEMAEKLYQTAIDF 328
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA++N I+N +V
Sbjct: 329 SELAAD--DVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAEINGITNTHYV 386
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ KPD+++ DP R G+ I+ + ++ +I+Y+SCNPAT ARD+
Sbjct: 387 CDSAENAMANWSKQDIKPDVILVDPPRKGLTESFIESSVSMEPKKIIYISCNPATMARDI 446
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 447 K-LYQELG-------YELKKVQPVDLFPQTHHVECVALL 477
>gi|419516700|ref|ZP_14056318.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA02506]
gi|379640703|gb|EIA05242.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA02506]
Length = 452
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 134/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++++D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVIIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y+LK +QPVD+FP T H+ECV LLE
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLLE 449
>gi|312898459|ref|ZP_07757849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera
micronuciformis F0359]
gi|310620378|gb|EFQ03948.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera
micronuciformis F0359]
Length = 460
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N+ N +G + +YG I++++ L+F+ISA SFFQ N+ QA+ LY
Sbjct: 247 IQNINSRHTNVILGNKTKVIYGSPTISDSIGDLSFRISAQSFFQVNSEQAQKLYDTALSY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G+E V+D++CGTGTI L LA K YG E+V AI DA +NA+ N + NA F+
Sbjct: 307 ADLK--GNETVVDVYCGTGTITLFLAERAKFAYGIEIVEPAIRDAVKNARDNGVKNAHFM 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD + + KPD+++ DP R G K++ + ++ R+VYVSCNPAT ARDL
Sbjct: 365 CGDAAYKLPELLRSGVKPDVIVIDPPRAGCEEKVLNAIASVRPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Y+ +G Y+ + +QPVDMFP T H+E CL+
Sbjct: 425 AYM-------KTRG-YETQKVQPVDMFPQTHHVETACLM 455
>gi|336173874|ref|YP_004581012.1| TrmA family RNA methyltransferase [Lacinutrix sp. 5H-3-7-4]
gi|334728446|gb|AEH02584.1| RNA methyltransferase, TrmA family [Lacinutrix sp. 5H-3-7-4]
Length = 470
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/214 (43%), Positives = 129/214 (60%), Gaps = 13/214 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
N ++ ++E Y G +I E + GL F+I+A SF+QTN+ QA LYKL AGL +G
Sbjct: 266 ANDTIYDQEVICYKGNDHIFEEMEGLKFKINAKSFYQTNSKQAYELYKLTRTFAGL--EG 323
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL-NK 126
E+V DL+ GTGTI +A+ K V G E VP AI+ A NA+LN I N +F GD+ N
Sbjct: 324 DELVYDLYTGTGTIAQFVAKQAKKVVGVEAVPDAITAAKENAQLNGIDNVSFFVGDMKNV 383
Query: 127 IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
+F +PD++I+DP R GMH ++K +L + ++VYVSCN AT ARDL
Sbjct: 384 FNQEFIETHGQPDVIITDPPRDGMHKDVVKQILNIAPQKVVYVSCNSATQARDL------ 437
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Q + YK+ +Q VDMFP T H+E + LLE
Sbjct: 438 ---QLMDAMYKVTKVQAVDMFPQTFHVENIVLLE 468
>gi|430825526|ref|ZP_19443730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0164]
gi|430445991|gb|ELA55690.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0164]
Length = 457
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVTPEAIEDAQFNALNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ + I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGVKPSVIVVDPPRKGLDHRFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 451
>gi|315924682|ref|ZP_07920899.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315621581|gb|EFV01545.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 458
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 127/217 (58%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N + GN +GEE ++G I+ETL G FQIS SFFQ NT QAE LY+ + A
Sbjct: 247 NINPNRGNRVLGEETRVIFGAPTISETLCGREFQISPASFFQVNTEQAEKLYRQVIRYAN 306
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V DL+CGTGTIG+ +A + V G E VP+AI+DA NA+ NNI N F G
Sbjct: 307 L--TGQESVFDLYCGTGTIGICMADRARKVTGIEAVPEAIADAKENARRNNIDNIQFFCG 364
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
KI + A D+V+ DP R G L++ ++ P+IVYVSCNP+T ARD
Sbjct: 365 RSEKIMSERLAAGDAADVVVVDPPRKGCARLLLETIVASGVPKIVYVSCNPSTLARD--- 421
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
C + D Y+L+ + P D+FP T H+E V L+
Sbjct: 422 -CRCLADAG----YRLEEVTPFDLFPGTGHVETVVLM 453
>gi|301299733|ref|ZP_07205983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|300852664|gb|EFK80298.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 459
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 124/220 (56%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN N +G++ L GK I +TL GL F ISA SF+Q N Q E LY+L +
Sbjct: 244 MLNVNPDKTNVILGKKTIKLAGKDTIQDTLNGLKFDISAQSFYQVNPQQTEKLYQLAIEN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L +A++ K VYG E+VP+AI DA NA LN++ N F
Sbjct: 304 AELT--GKETVIDAYCGIGTISLNMAKFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFE 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + KPD+++ DP R G+ LI+ + ++ +IVYVSCNPAT RD+
Sbjct: 362 VGEAEVWMEKWQKQGIKPDVIMVDPPRKGLTSSLIQSAVTMEPKKIVYVSCNPATLVRDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G K +QPVD FP T H+E V +LE
Sbjct: 422 QEFMEL-------GYQVTKPIQPVDQFPQTTHVESVTVLE 454
>gi|374297936|ref|YP_005048127.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
clariflavum DSM 19732]
gi|359827430|gb|AEV70203.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
clariflavum DSM 19732]
Length = 456
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 129/217 (59%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+NT+ N +G + L+G+ NIT+ + F+IS SF+Q N Q E+LY + AG
Sbjct: 244 NINTANTNVILGSKNIVLFGEENITDYIGNFKFKISPLSFYQVNPVQTELLYNKALEYAG 303
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V DL+CG GTI L L++ K VYG EVV AI DA NAKLN + N F+ G
Sbjct: 304 L--TGEETVFDLYCGIGTISLFLSQKAKKVYGVEVVEDAIRDAQENAKLNGVDNVEFIVG 361
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ KI D + + D+V+ DP R G ++ L+ + RIVYVSCNPAT ARD+ +
Sbjct: 362 EAEKIIPDMYDKGIRADVVVVDPPRKGCDGVVLDTLVNMSPERIVYVSCNPATLARDMAF 421
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y++ +QPVDMFP + H+ECV L+
Sbjct: 422 LSE-------RG-YEVLEVQPVDMFPWSSHVECVTLM 450
>gi|343085460|ref|YP_004774755.1| TrmA family RNA methyltransferase [Cyclobacterium marinum DSM 745]
gi|342353994|gb|AEL26524.1| RNA methyltransferase, TrmA family [Cyclobacterium marinum DSM 745]
Length = 470
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 128/223 (57%), Gaps = 12/223 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M +N T E +T GK I ET+ GL F+I SF+QTN+ QA LYK+ +
Sbjct: 256 MYIINLKKNETFQDLEVHTYAGKDYIEETMEGLKFKIGPKSFYQTNSSQAYELYKVAREF 315
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E+V DL+ GTGTI +A+ K V G E V AI DA NA NNI N F
Sbjct: 316 ADL--SGNEVVYDLYTGTGTIANFVAKDAKQVIGIEYVEPAIVDAKENAIRNNIDNTLFY 373
Query: 121 QGDLNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD+ + D F + K D++I+DP R GMH ++ LLKL+A +IVYVSCNPAT ARD
Sbjct: 374 AGDMKDVLDDTFVSNHQKADVIITDPPRAGMHEDVVNMLLKLEAEKIVYVSCNPATQARD 433
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
+ L Y + +QPVDMFP T H+E V LL++
Sbjct: 434 VALLAEK---------YDVIKIQPVDMFPQTYHVENVVLLKIK 467
>gi|425446067|ref|ZP_18826079.1| putative enzyme [Microcystis aeruginosa PCC 9443]
gi|389733804|emb|CCI02455.1| putative enzyme [Microcystis aeruginosa PCC 9443]
Length = 454
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 124/218 (56%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N GN G + T+ G+ ITE GLT+Q++A++FFQ NT AE L+ LI C
Sbjct: 242 NYNPDRGNAIFGSQTQTIAGRDYITEKFAGLTYQLAADTFFQVNTEAAEALFALI--CQK 299
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EI++D +CG GT L LA+ VK V G E ++ A NA+LN+I+N TF+ G
Sbjct: 300 LELKGEEILIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNDITNTTFILG 359
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K KPDI++ DP R G ++ LL+L++ RIVY+SC AT ARDL Y
Sbjct: 360 AVEKT---LPQLTVKPDIILLDPPRKGCDRSVLDSLLQLQSQRIVYISCQSATLARDLQY 416
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
LC G Y+L +Q D FP TPH+EC L
Sbjct: 417 LCQ-------TGDYQLLEVQTADFFPQTPHVECAAFLR 447
>gi|293557121|ref|ZP_06675675.1| RNA methyltransferase, TrmA family [Enterococcus faecium E1039]
gi|291600690|gb|EFF30988.1| RNA methyltransferase, TrmA family [Enterococcus faecium E1039]
Length = 267
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 55 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 114
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 115 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYE 172
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 173 VGKAEKVMKKWQEKGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDT 232
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 233 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 261
>gi|417793352|ref|ZP_12440630.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK255]
gi|334273080|gb|EGL91431.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK255]
Length = 454
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 131/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G + TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 243 MQNINDQNTNAIFGNDWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTQMAEKLYQTAIDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR D ++V+D + G GTIGL++A++VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 303 AELRKD--DVVIDAYSGIGTIGLSVAKYVKDVYGVEIIPEAVENSKKNARLNNISNAHYV 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 361 CDTAENAMKKWLKEGIHPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 421 K-LYQELG-------YELKKVQPVDLFPQTHHVECVALL 451
>gi|229916717|ref|YP_002885363.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b]
gi|229468146|gb|ACQ69918.1| RNA methyltransferase, TrmA family [Exiguobacterium sp. AT1b]
Length = 454
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 124/221 (56%), Gaps = 12/221 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN N +G LYG I + + GLTF IS +SFFQ N Q E LY +
Sbjct: 241 MQNVNPDKTNVILGATNKLLYGHETIEDKIAGLTFTISPHSFFQVNPVQTEKLYGKALEY 300
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E V+D +CG GTI L LAR HVYG EVVP+AI DA +NA +N I N T+
Sbjct: 301 AQL--SGTEQVVDAYCGIGTISLFLARKAAHVYGVEVVPEAIEDAKQNALVNEIDNVTYA 358
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + PD+++ DP R G ++ ++++ RIVYVSCN AT ARD+
Sbjct: 359 CGAAEDVLPQWKKDGVNPDVIVVDPPRKGCAESFLETMVEMGPKRIVYVSCNVATQARDM 418
Query: 181 DYLC-HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YL HG Y+L + PVDMFPHT H+E V LE
Sbjct: 419 RYLADHG---------YRLMEVTPVDMFPHTAHVETVAWLE 450
>gi|389572911|ref|ZP_10162988.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus sp. M 2-6]
gi|388427356|gb|EIL85164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus sp. M 2-6]
Length = 461
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N G+E L+G+ I +T+ + F ISA SF+Q N Q +VLY +
Sbjct: 248 VQNVNSKKTNVIFGDETTVLWGEEYIYDTIGDIKFAISARSFYQVNPAQTKVLYDKALEY 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ VYG E+VP+AI DA RNA LN I+N F
Sbjct: 308 AELQ--GEETVIDAYCGIGTISLFLAQKAGRVYGVEIVPEAIEDAKRNADLNGINNVEFA 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + ++ K D ++ DP R G L+ +LK+K R+VYVSCNP T ARDL
Sbjct: 366 VGEAETVIPNWYKEGIKADTLVVDPPRKGCDEALLDTILKMKPNRVVYVSCNPGTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y + +QPVDMFPHT H+ECV L
Sbjct: 426 RILE--------DGGYVTEEVQPVDMFPHTSHVECVASL 456
>gi|227892264|ref|ZP_04010069.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC
11741]
gi|227865905|gb|EEJ73326.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius ATCC
11741]
Length = 456
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 124/220 (56%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN N +G++ L GK I +TL GL F ISA SF+Q N Q E LY+L +
Sbjct: 244 MLNVNPDKTNVILGKKTIKLAGKDTIQDTLNGLKFDISAQSFYQVNPQQTEKLYQLAIEN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L +A++ K VYG E+VP+AI DA NA LN++ N F
Sbjct: 304 AELT--GKETVIDAYCGIGTISLNMAKFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFE 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + KPD+++ DP R G+ LI+ + ++ +IVYVSCNPAT RD+
Sbjct: 362 VGEAEVWMEKWQKQGIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKIVYVSCNPATLVRDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G K +QPVD FP T H+E V +LE
Sbjct: 422 QEFMEL-------GYQVTKPIQPVDQFPQTTHVESVTVLE 454
>gi|148381310|ref|YP_001255851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. ATCC 3502]
gi|153931489|ref|YP_001385686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. ATCC 19397]
gi|153937212|ref|YP_001389092.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. Hall]
gi|148290794|emb|CAL84928.1| putative RNA methyltransferase [Clostridium botulinum A str. ATCC
3502]
gi|152927533|gb|ABS33033.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. ATCC 19397]
gi|152933126|gb|ABS38625.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. Hall]
Length = 461
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 129/220 (58%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N +GE+ TL+GK IT+ + F IS SFFQ N Q EVLYK +
Sbjct: 248 IQNINTKKTNVILGEKCITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G EIV D +CGTGTI L L++ K VYG E++ +AI +A NAK N I NA F
Sbjct: 308 ANLK--GEEIVFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFF 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ D + K D+V+ DP R G L++ + K RIVYVSC+P T ARDL
Sbjct: 366 VGKSEEVIPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G+G Y+ + +QPVDMFP T H+E LL+
Sbjct: 426 GIL-NGLG-------YETREVQPVDMFPQTSHVETCVLLQ 457
>gi|323345673|ref|ZP_08085896.1| TrmA family RNA methyltransferase [Prevotella oralis ATCC 33269]
gi|323093787|gb|EFZ36365.1| TrmA family RNA methyltransferase [Prevotella oralis ATCC 33269]
Length = 475
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 127/218 (58%), Gaps = 13/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + G+ ++ G +I E + GL F++ SF+QTNT QA LY + + A
Sbjct: 263 VDNHKGNDTFGDLPVEVFKGNDHIFEEMEGLRFKVGPKSFYQTNTEQAFHLYSVARELAS 322
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E+V DL+ GTGTI +A K V G E VP+AI DA N+ +N I N F G
Sbjct: 323 L--TGKELVYDLYTGTGTIANFVAGRAKKVIGIEYVPEAIEDAKVNSAVNRIENTLFFAG 380
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I DF +PD++I+DP R GMH +I+ +L+ RIVYVSCNPAT ARDL
Sbjct: 381 DMKDILTDDFIREHGQPDVIITDPPRAGMHTDVIQTILRANPQRIVYVSCNPATQARDLA 440
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L YK+ +QPVDMFPHTPH+E V LL
Sbjct: 441 AL---------DMQYKVDIVQPVDMFPHTPHVENVVLL 469
>gi|157691441|ref|YP_001485903.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032]
gi|157680199|gb|ABV61343.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032]
Length = 465
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 127/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N G+E L+G+ I +T+ + F ISA SF+Q N Q ++LY +
Sbjct: 248 VQNVNSKKTNVIFGDETTVLWGEEYIYDTIGDIKFAISARSFYQVNPAQTKMLYDKALEY 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ VYG E+VP+AI DA RNA LN I+N F
Sbjct: 308 AELQ--GEETVIDAYCGIGTISLFLAQKAGRVYGVEIVPEAIEDAKRNAALNGINNVEFA 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + ++ K D ++ DP R G L+ +LK+K R+VYVSCNP T ARDL
Sbjct: 366 VGEAETVIPNWYKEGIKADTLVVDPPRKGCDEALLDTILKMKPKRVVYVSCNPGTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y + +QPVDMFPHT H+ECV L L
Sbjct: 426 RILED--------GGYVTEEVQPVDMFPHTSHVECVAQLIL 458
>gi|423098413|ref|ZP_17086182.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua ATCC
33091]
gi|370795079|gb|EHN62809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua ATCC
33091]
Length = 457
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 127/220 (57%), Gaps = 11/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIDNVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + +PD VI DP R G LIK LL+++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVKEGFRPDAVIVDPPRSGCDQGLIKSLLQVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Y+++ +QPVDMFP T H+E V LL+
Sbjct: 425 ALLAKK---------YQIRYMQPVDMFPQTAHVETVTLLQ 455
>gi|295697348|ref|YP_003590586.1| TrmA family RNA methyltransferase [Kyrpidia tusciae DSM 2912]
gi|295412950|gb|ADG07442.1| RNA methyltransferase, TrmA family [Kyrpidia tusciae DSM 2912]
Length = 528
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/208 (43%), Positives = 126/208 (60%), Gaps = 11/208 (5%)
Query: 14 GEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLD 73
G LYG S I + + GL F+IS SF+Q N+ QAE +Y+L + AGL DGS+ V+D
Sbjct: 331 GRRSIALYGPSRIVDRMGGLWFEISPTSFYQVNSQQAERMYRLAVEAAGL--DGSQRVVD 388
Query: 74 LFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN 133
+CG GT+ L L+R V G EV +A++DA RNA++N I NA F G + +I
Sbjct: 389 AYCGVGTLSLFLSRSAAWVTGIEVAREAVADARRNARMNRIGNARFQVGAVEEILPRL-V 447
Query: 134 AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIK 193
A +PD+V DP R G ++++ L+ + PR+VYVSC+PAT ARDL L
Sbjct: 448 ADRQPDVVTLDPPRRGCRREVLEALICSQVPRVVYVSCDPATLARDLRILA--------G 499
Query: 194 GCYKLKSLQPVDMFPHTPHIECVCLLEL 221
G Y+++ + PVDMFP T H+E V LL L
Sbjct: 500 GGYQVRGVWPVDMFPQTGHVESVALLGL 527
>gi|241889868|ref|ZP_04777166.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379]
gi|241863490|gb|EER67874.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379]
Length = 446
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 129/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G++ L+GK IT+TL G+ F+IS SF+Q N Q EVLY +
Sbjct: 234 MLNINDKKTNVIFGDKTENLFGKDYITDTLDGIDFKISLRSFYQVNPVQTEVLYSKALEL 293
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L++ ++ ++D +CG GTI L A+ VK VYG E+V A+ DAC NAK NNI+N F+
Sbjct: 294 AELKE--TDTIIDAYCGIGTISLFAAKKVKKVYGIEIVEAAVLDACENAKNNNITNVEFL 351
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + K D VI DP R G ++ L + +IVYVSCNPAT ARD+
Sbjct: 352 LGKSEDVIKKLISQDVKLDAVIVDPPRKGCEESFLRDLAAMDIEKIVYVSCNPATLARDM 411
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ + G+G YKL S+QPVDMFP T H+E V LL
Sbjct: 412 E-IMRGLG-------YKLGSVQPVDMFPGTYHVETVVLL 442
>gi|392428518|ref|YP_006469529.1| RNA methyltransferase [Streptococcus intermedius JTH08]
gi|391757664|dbj|BAM23281.1| RNA methyltransferase [Streptococcus intermedius JTH08]
Length = 451
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 135/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N NT G++ TL+G+ IT+ + FQI+A +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNTIFGKDWRTLHGRDYITDRMLNNDFQIAAPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA++N I+N +V
Sbjct: 300 SELAAD--DVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAEINGITNTHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ KPD+++ DP R G+ I+ + ++ +I+Y+SCNPAT ARD+
Sbjct: 358 CDSAENAMANWSKQDIKPDVILVDPPRKGLTESFIESSVSMEPKKIIYISCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVALL 448
>gi|333377268|ref|ZP_08469003.1| hypothetical protein HMPREF9456_00598 [Dysgonomonas mossii DSM
22836]
gi|332884588|gb|EGK04845.1| hypothetical protein HMPREF9456_00598 [Dysgonomonas mossii DSM
22836]
Length = 469
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 124/217 (57%), Gaps = 12/217 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN +T +E G I E + GL F+I SF+QTN+ QA LYK+ D A L
Sbjct: 261 VNQKANDTITDQEVLVWKGNDCIYEEMEGLKFKIGPKSFYQTNSEQAYNLYKIARDFANL 320
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI +A K V G E V AI DA N+++N I N F GD
Sbjct: 321 --SGDELVYDLYTGTGTIANFVAGKAKKVIGIEYVEDAILDARVNSQINKIDNTLFYAGD 378
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I DF N +PD++I+DP R GMH +IK +L + RIVYVSCNPAT ARDL
Sbjct: 379 MKDILTQDFINEHGRPDVIITDPPRAGMHDDVIKTILFAEPERIVYVSCNPATQARDLSL 438
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L YK++ +QPVDMFPHT H+E V LL
Sbjct: 439 LDEK---------YKVEKVQPVDMFPHTHHVENVVLL 466
>gi|430819927|ref|ZP_19438571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0045]
gi|430833053|ref|ZP_19451066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0679]
gi|430440130|gb|ELA50407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0045]
gi|430486508|gb|ELA63344.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0679]
Length = 457
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 451
>gi|16800882|ref|NP_471150.1| hypothetical protein lin1815 [Listeria innocua Clip11262]
gi|50401775|sp|Q92AV4.1|Y1815_LISIN RecName: Full=Uncharacterized RNA methyltransferase lin1815
gi|16414317|emb|CAC97046.1| lin1815 [Listeria innocua Clip11262]
Length = 457
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 127/220 (57%), Gaps = 11/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIDNVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + +PD VI DP R G LIK LL+++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVKEGFRPDAVIVDPPRSGCDQGLIKSLLQVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Y+++ +QPVDMFP T H+E V LL+
Sbjct: 425 ALLAKK---------YQIRYMQPVDMFPQTAHVETVTLLQ 455
>gi|357043208|ref|ZP_09104907.1| hypothetical protein HMPREF9138_01379 [Prevotella histicola F0411]
gi|355368804|gb|EHG16217.1| hypothetical protein HMPREF9138_01379 [Prevotella histicola F0411]
Length = 474
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 133/219 (60%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + + + T++ GK +I ET+ L F++ SF+QTNT QA LY + + A
Sbjct: 265 VDNQKGNDTFNDLDLTVFKGKDHIYETMEDLKFKVGPKSFYQTNTEQAYHLYAVAREFAD 324
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+V DL+ GTGTI +A+ + V G E VP+AI DA N+++N ISN F G
Sbjct: 325 LT--GNELVYDLYTGTGTIANFVAKNARKVIGIEYVPEAIEDAKVNSEVNKISNTLFYAG 382
Query: 123 DLNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I + F +PD++I+DP R GMH ++ +L RIVYVSCNP+T ARDL
Sbjct: 383 DMKDILTESFIQKHGRPDVIITDPPRAGMHPDVVNVILGAHPERIVYVSCNPSTQARDLA 442
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YK+ ++QPVDMFPHTPH+E V LL+
Sbjct: 443 LL---------DSEYKVAAVQPVDMFPHTPHVENVVLLK 472
>gi|433654470|ref|YP_007298178.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433292659|gb|AGB18481.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 450
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 132/219 (60%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ VN S + E+ LYG+ I E + GL F+ISA SFFQTN+ AE LY + +
Sbjct: 242 LHTVNDSYSDAVKCEKLTVLYGRDYIMEEILGLKFKISAFSFFQTNSKGAEKLYSIAREF 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AG + ++I+ DL+CGTGTIG+ +A K V G E+V +A+ A NA+LN +SN F+
Sbjct: 302 AG--EISNKILFDLYCGTGTIGIIMAPLAKKVIGVELVEEAVDAARENARLNGLSNIQFI 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD + KPD+V+ DP RPG++ K I ++KL +I+YVSCNP + RDL
Sbjct: 360 AGD---VAQKIKEINEKPDVVVLDPPRPGVNPKAILDIIKLNPEKIIYVSCNPVSLTRDL 416
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ YK++ ++ VDMFPHTPH+ECV L+
Sbjct: 417 KMFN--------ERQYKVEKVKCVDMFPHTPHVECVTLM 447
>gi|421488415|ref|ZP_15935803.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK304]
gi|400367632|gb|EJP20647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK304]
Length = 452
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 131/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G + TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGNDWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTQMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR D ++V+D + G GTIGL++A++VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELRKD--DVVIDAYSGIGTIGLSVAKYVKDVYGVEIIPEAVENSKKNARLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKKWLKEGIHPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLL 448
>gi|420193342|ref|ZP_14699195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM023]
gi|394259987|gb|EJE04810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM023]
Length = 456
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L + + IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVIYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPQAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|293569131|ref|ZP_06680438.1| hypothetical RNA methyltransferase [Enterococcus faecium E1071]
gi|291588178|gb|EFF20019.1| hypothetical RNA methyltransferase [Enterococcus faecium E1071]
Length = 245
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 33 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 92
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA N+ N I N +
Sbjct: 93 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNSLNNKIENVHYE 150
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 151 VGKAEKVMKKWQEKGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 210
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
L + Y +K +QPVD+FP T HIE V
Sbjct: 211 KLLA--------EAGYVVKKVQPVDLFPQTHHIELVA 239
>gi|327314509|ref|YP_004329946.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
F0289]
gi|326945121|gb|AEA21006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
F0289]
Length = 478
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 128/219 (58%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ GN + + + ++ G +I ET+ L F++ SF+QTNT QA LY + A
Sbjct: 265 VDNQKGNDTFNDLDLIVFKGNDHIFETMEDLKFKVGPKSFYQTNTEQAYHLYSVARAFAA 324
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+V DL+ GTGTI +AR + V G E VP+AI DA NA++N I N F G
Sbjct: 325 LT--GNELVYDLYTGTGTIANFVARNARKVIGIEYVPEAIEDAKVNAEINKIDNTLFYAG 382
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I DF PD++I+DP R GMH +I +L RIVYVSCNPAT ARDL
Sbjct: 383 DMKDILTEDFICRHGHPDVIITDPPRAGMHQDVISVILGASPKRIVYVSCNPATQARDLA 442
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L Y++ ++QPVDMFPHTPH+E V LLE
Sbjct: 443 LL---------DADYRVAAVQPVDMFPHTPHVENVVLLE 472
>gi|332983359|ref|YP_004464800.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1
BON]
gi|332701037|gb|AEE97978.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1
BON]
Length = 456
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 127/218 (58%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N N +G + +YG +I +TL GLTF+IS SFFQ N Q EVLY + AG
Sbjct: 245 NINRRRTNVILGSQCKVIYGNDHIMDTLCGLTFKISPLSFFQVNPRQTEVLYTKAIEYAG 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L DG++ VLD +CG GTI L A+ +YG E + QA+ DA NA+LN+ISN F+
Sbjct: 305 L--DGTQTVLDAYCGIGTISLIAAQKAAKIYGIEEIQQAVDDARENARLNDISNVEFICA 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
G F + D++I DP R G ++ ++L R+VYVSCNPAT ARD+ +
Sbjct: 363 KAEDAIGRFIEDKVRIDVIIMDPPRKGCDKGFLETAVRLCPERMVYVSCNPATLARDMRF 422
Query: 183 LC-HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L HG YK ++QPVDMFPHT H+E V L+
Sbjct: 423 LADHG---------YKATAVQPVDMFPHTTHVETVVLM 451
>gi|306825259|ref|ZP_07458601.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|304432695|gb|EFM35669.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sp. oral
taxon 071 str. 73H25AP]
Length = 451
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 133/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L++D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA LNNI+NA +V
Sbjct: 300 AELKED--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAALNNITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVALL 448
>gi|307706544|ref|ZP_07643351.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK321]
gi|307617999|gb|EFN97159.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK321]
Length = 451
Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 133/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G +QI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDYQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L++D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKED--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YDLKKVQPVDLFPQTHHVECVALL 448
>gi|425058909|ref|ZP_18462266.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
504]
gi|430835761|ref|ZP_19453748.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0680]
gi|430838138|ref|ZP_19456088.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0688]
gi|430849647|ref|ZP_19467420.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1185]
gi|430858103|ref|ZP_19475732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1552]
gi|431497660|ref|ZP_19514814.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1634]
gi|403037029|gb|EJY48355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
504]
gi|430489123|gb|ELA65756.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0680]
gi|430492418|gb|ELA68832.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0688]
gi|430537398|gb|ELA77741.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1185]
gi|430546055|gb|ELA86021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1552]
gi|430588595|gb|ELB26787.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1634]
Length = 457
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDT 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 451
>gi|257898308|ref|ZP_05677961.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com15]
gi|257836220|gb|EEV61294.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com15]
Length = 457
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 451
>gi|425054561|ref|ZP_18458066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
505]
gi|403035513|gb|EJY46899.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
505]
Length = 457
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 451
>gi|385840843|ref|YP_005864167.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus salivarius CECT
5713]
gi|300214964|gb|ADJ79380.1| tRNA (Uracil-5-)-methyltransferase [Lactobacillus salivarius CECT
5713]
Length = 456
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 124/220 (56%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN N +G++ L GK I +TL GL F ISA SF+Q N Q E LY+L +
Sbjct: 244 MLNVNPDKTNVILGKKTIKLAGKDTIQDTLNGLKFDISAQSFYQVNPQQTEKLYQLAIEN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L +A++ K VYG E+VP+AI DA NA LN++ N F
Sbjct: 304 AELT--GKETVIDAYCGIGTISLNMAKFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFE 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + KPD+++ DP R G+ LI+ + ++ ++VYVSCNPAT RD+
Sbjct: 362 VGEAEVWMEKWQKQGIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKVVYVSCNPATLVRDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G K +QPVD FP T H+E V +LE
Sbjct: 422 QEFMEL-------GYQVTKPIQPVDQFPQTTHVESVTVLE 454
>gi|69246826|ref|ZP_00604135.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
gi|257878457|ref|ZP_05658110.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,230,933]
gi|257882876|ref|ZP_05662529.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,502]
gi|257889346|ref|ZP_05668999.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,410]
gi|257894358|ref|ZP_05674011.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,408]
gi|260560044|ref|ZP_05832222.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
gi|261207467|ref|ZP_05922153.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6]
gi|289565878|ref|ZP_06446319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
D344SRF]
gi|293559994|ref|ZP_06676502.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1162]
gi|294621045|ref|ZP_06700237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
U0317]
gi|314937822|ref|ZP_07845139.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a04]
gi|314941632|ref|ZP_07848512.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133C]
gi|314948879|ref|ZP_07852248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0082]
gi|314951003|ref|ZP_07854070.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133A]
gi|314993004|ref|ZP_07858400.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133B]
gi|314996451|ref|ZP_07861494.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a01]
gi|389868786|ref|YP_006376209.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecium DO]
gi|424792359|ref|ZP_18218596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
V689]
gi|424802717|ref|ZP_18228191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
S447]
gi|424825925|ref|ZP_18250876.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R501]
gi|424852834|ref|ZP_18277219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R499]
gi|424869056|ref|ZP_18292779.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R497]
gi|424938829|ref|ZP_18354593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R496]
gi|424953589|ref|ZP_18368541.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R494]
gi|424958939|ref|ZP_18373554.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R446]
gi|424959216|ref|ZP_18373816.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1986]
gi|424965994|ref|ZP_18379866.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1190]
gi|424968735|ref|ZP_18382338.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1140]
gi|424971913|ref|ZP_18385311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1139]
gi|424973229|ref|ZP_18386518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1137]
gi|424978346|ref|ZP_18391278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1123]
gi|424980424|ref|ZP_18393219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV99]
gi|424985466|ref|ZP_18397940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV69]
gi|424986780|ref|ZP_18399184.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV38]
gi|424989831|ref|ZP_18402083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV26]
gi|424995108|ref|ZP_18407006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV168]
gi|424998662|ref|ZP_18410333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV165]
gi|425002335|ref|ZP_18413770.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV161]
gi|425005969|ref|ZP_18417166.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV102]
gi|425006523|ref|ZP_18417695.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV1]
gi|425010583|ref|ZP_18421523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E422]
gi|425015110|ref|ZP_18425751.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E417]
gi|425016864|ref|ZP_18427405.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C621]
gi|425020530|ref|ZP_18430833.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C497]
gi|425027872|ref|ZP_18435124.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C1904]
gi|425030772|ref|ZP_18435933.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
515]
gi|425037137|ref|ZP_18441823.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
514]
gi|425038414|ref|ZP_18443030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
513]
gi|425043380|ref|ZP_18447621.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
511]
gi|425044439|ref|ZP_18448600.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
510]
gi|425048848|ref|ZP_18452730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
509]
gi|425051872|ref|ZP_18455512.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
506]
gi|425060283|ref|ZP_18463580.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
503]
gi|430830738|ref|ZP_19448794.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0333]
gi|430844004|ref|ZP_19461902.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1050]
gi|430846005|ref|ZP_19463870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1133]
gi|430854850|ref|ZP_19472562.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1392]
gi|431541936|ref|ZP_19518165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1731]
gi|431750083|ref|ZP_19538810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2297]
gi|431754852|ref|ZP_19543512.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2883]
gi|431767227|ref|ZP_19555682.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1321]
gi|431770852|ref|ZP_19559248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1644]
gi|431772307|ref|ZP_19560648.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2369]
gi|431775750|ref|ZP_19564020.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2560]
gi|431778818|ref|ZP_19567024.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4389]
gi|68195059|gb|EAN09521.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium DO]
gi|257812685|gb|EEV41443.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,230,933]
gi|257818534|gb|EEV45862.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,502]
gi|257825706|gb|EEV52332.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,410]
gi|257830737|gb|EEV57344.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,408]
gi|260073879|gb|EEW62203.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium C68]
gi|260078358|gb|EEW66063.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium TC 6]
gi|289162338|gb|EFD10197.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
D344SRF]
gi|291599359|gb|EFF30384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
U0317]
gi|291606082|gb|EFF35508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1162]
gi|313589433|gb|EFR68278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a01]
gi|313592527|gb|EFR71372.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133B]
gi|313596858|gb|EFR75703.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133A]
gi|313599523|gb|EFR78366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133C]
gi|313642853|gb|EFS07433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0133a04]
gi|313644669|gb|EFS09249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
TX0082]
gi|388534035|gb|AFK59227.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecium DO]
gi|402917722|gb|EJX38472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
V689]
gi|402919332|gb|EJX39941.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
S447]
gi|402924918|gb|EJX45101.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R501]
gi|402933029|gb|EJX52489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R499]
gi|402936041|gb|EJX55240.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R496]
gi|402936111|gb|EJX55309.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R497]
gi|402938345|gb|EJX57360.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R446]
gi|402938710|gb|EJX57695.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
R494]
gi|402942074|gb|EJX60708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1190]
gi|402950836|gb|EJX68810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1140]
gi|402951086|gb|EJX69038.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1986]
gi|402957038|gb|EJX74455.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1139]
gi|402959074|gb|EJX76352.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1137]
gi|402962108|gb|EJX79078.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
P1123]
gi|402965901|gb|EJX82582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV69]
gi|402966541|gb|EJX83165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV99]
gi|402975775|gb|EJX91708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV38]
gi|402978158|gb|EJX93920.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV168]
gi|402981022|gb|EJX96578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV26]
gi|402982361|gb|EJX97831.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV165]
gi|402983674|gb|EJX99053.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV161]
gi|402984488|gb|EJX99796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV102]
gi|402996777|gb|EJY11141.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E417]
gi|402997055|gb|EJY11405.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
ERV1]
gi|402999299|gb|EJY13496.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E422]
gi|403005116|gb|EJY18864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C1904]
gi|403005942|gb|EJY19619.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C621]
gi|403009109|gb|EJY22577.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
C497]
gi|403012041|gb|EJY25309.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
514]
gi|403017002|gb|EJY29783.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
515]
gi|403019519|gb|EJY32115.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
513]
gi|403020106|gb|EJY32665.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
511]
gi|403029666|gb|EJY41409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
509]
gi|403029899|gb|EJY41623.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
510]
gi|403036432|gb|EJY47781.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
506]
gi|403042789|gb|EJY53732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
503]
gi|430482327|gb|ELA59445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0333]
gi|430496594|gb|ELA72653.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1050]
gi|430539825|gb|ELA80064.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1133]
gi|430547729|gb|ELA87645.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1392]
gi|430592983|gb|ELB30970.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1731]
gi|430610556|gb|ELB47700.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2297]
gi|430618680|gb|ELB55521.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2883]
gi|430631235|gb|ELB67558.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1321]
gi|430634501|gb|ELB70620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1644]
gi|430637995|gb|ELB73976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2369]
gi|430642398|gb|ELB78176.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2560]
gi|430643479|gb|ELB79218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4389]
Length = 457
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 451
>gi|431586006|ref|ZP_19520521.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1861]
gi|431739987|ref|ZP_19528906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2039]
gi|430593184|gb|ELB31170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1861]
gi|430604114|gb|ELB41614.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2039]
Length = 457
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 451
>gi|387783742|ref|YP_006069825.1| tRNA methyltransferase, TrmA family [Streptococcus salivarius
JIM8777]
gi|338744624|emb|CCB94990.1| tRNA methyltransferase, TrmA family [Streptococcus salivarius
JIM8777]
Length = 453
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYG+ IT+ + G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNTNAIFGKEFRTLYGQDTITDRMLGNDYEISAQSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ D IV+D + G GTIGL+ A+ V+ VYG EV+ A+ DA +NA+ N I+NA +V
Sbjct: 300 SDPNSDS--IVIDAYSGIGTIGLSFAKQVEEVYGVEVIETAVEDAKKNAERNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KPD++I DP R G+ IK + ++ +I YVSCNPAT ARD+
Sbjct: 358 ADSAENAMAKWSKDGIKPDVIIVDPPRKGLTESFIKASVAMQPEKITYVSCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E VCL+
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVCLM 448
>gi|322389307|ref|ZP_08062867.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
ATCC 903]
gi|321144051|gb|EFX39469.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
ATCC 903]
Length = 452
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E LYG+ IT+ + G +FQIS +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRVLYGQDYITDQMLGNSFQISGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR+D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA LNNI+NA +V
Sbjct: 300 AELRED--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAALNNITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P ++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLL 448
>gi|294614134|ref|ZP_06694055.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium E1636]
gi|291592984|gb|EFF24572.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus faecium E1636]
Length = 457
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDT 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 451
>gi|418631461|ref|ZP_13193923.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU128]
gi|374835223|gb|EHR98843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU128]
Length = 456
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L + + IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVIYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|319892940|ref|YP_004149815.1| TrmA family RNA methyltransferase [Staphylococcus pseudintermedius
HKU10-03]
gi|317162636|gb|ADV06179.1| RNA methyltransferase, TrmA family [Staphylococcus pseudintermedius
HKU10-03]
Length = 454
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 124/217 (57%), Gaps = 11/217 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N T+ N +G T++GK I +TL LTF+I SF+Q N Q + LY+ A
Sbjct: 245 NFQTNKTNVIMGHTSKTIFGKDIIEDTLDDLTFEIGDLSFYQINVTQTQKLYRQALQYAN 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+VLD +CG GTI L +A +HVYG EVVP+AI DA RNA+ N ++N TFV G
Sbjct: 305 LT--GNEVVLDAYCGIGTISLFMAPHAQHVYGVEVVPEAIEDAKRNARYNQLNNTTFVAG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + +PD+V DP R G I+ L L RIVYVSCNP+T RD++
Sbjct: 363 AAEDVILKWQQDGIQPDVVTVDPPRKGCDATFIETLNALAPKRIVYVSCNPSTQLRDIEM 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+LK + PVDMFPHT H+E V LL
Sbjct: 423 LS---------AQYELKEMTPVDMFPHTTHVETVALL 450
>gi|323489776|ref|ZP_08095001.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
gi|323396514|gb|EGA89335.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
Length = 453
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 126/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TL+GK I + + + F+ISA SF+Q N Q EVLY
Sbjct: 242 VQNINPEKTNVIFGDETLTLWGKDVIEDRIGDVRFEISARSFYQINPVQTEVLYGQALAY 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ K V G E+VPQAI DA RNA+LN ++N F
Sbjct: 302 AQL--TGEETVIDAYCGIGTISLFLAQRAKFVMGVEIVPQAIEDAKRNAELNGLTNTLFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + K D+++ DP R G +L+ +LK + R+VYVSCNPAT ARDL
Sbjct: 360 AGPAEQVIPRWYKEGKKADVLVVDPPRKGCDEQLLHTILKQRPTRVVYVSCNPATLARDL 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y+ K +QPVDMFP + H E V LEL
Sbjct: 420 RILE--------DGGYRTKEVQPVDMFPQSTHCEAVAWLEL 452
>gi|189501475|ref|YP_001957192.1| TrmA family RNA methyltransferase [Candidatus Amoebophilus
asiaticus 5a2]
gi|189496916|gb|ACE05463.1| RNA methyltransferase, TrmA family [Candidatus Amoebophilus
asiaticus 5a2]
Length = 468
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 131/217 (60%), Gaps = 12/217 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VNT T E + G+ ITE + GL +QI SFFQTN+ QA+VLY+ + D A L
Sbjct: 259 VNTKYNETFYDLEVHCYAGQPFITEVIDGLQWQIGPKSFFQTNSTQAKVLYQTVADLANL 318
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
+ G E+V DL+ G GTI LAR + V G E++ AI DA NA+LN +SN +F GD
Sbjct: 319 Q--GHELVYDLYTGVGTIAHFLARKARQVVGIEMIESAIKDAQINAQLNQLSNVSFWLGD 376
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I + +PDI+++DP R GMH +++ LL++ +I+YVSCNPAT ARD+
Sbjct: 377 MKDIFNEELLKECGRPDIIVTDPPRAGMHPDVVQQLLQVAPEKIIYVSCNPATQARDI-- 434
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
H + D+ Y L QP+DMFPHT H+E V +L
Sbjct: 435 --HDLQDR-----YVLTHAQPIDMFPHTSHVENVAVL 464
>gi|431370170|ref|ZP_19509869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1627]
gi|430583917|gb|ELB22275.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1627]
Length = 457
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVYKVYGMEVIPEAIEDAQFNALNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 451
>gi|418634446|ref|ZP_13196841.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU129]
gi|420190749|ref|ZP_14696689.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM037]
gi|420204823|ref|ZP_14710362.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM015]
gi|374837303|gb|EHS00872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU129]
gi|394258428|gb|EJE03311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM037]
gi|394271747|gb|EJE16233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM015]
Length = 456
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L + + IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVIYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPQAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|418961824|ref|ZP_13513709.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius
SMXD51]
gi|380343919|gb|EIA32267.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus salivarius
SMXD51]
Length = 458
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 124/220 (56%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN N +G++ L GK I +TL GL F ISA SF+Q N Q E LY+L +
Sbjct: 244 MLNVNPDKTNVILGKKTIKLAGKDTIQDTLNGLKFDISAQSFYQVNPQQTEKLYQLAIEN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L +A++ K VYG E+VP+AI DA NA LN++ N F
Sbjct: 304 AELT--GKETVIDAYCGIGTISLNMAKFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFE 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + KPD+++ DP R G+ LI+ + ++ ++VYVSCNPAT RD+
Sbjct: 362 VGEAEVWMEKWQKQGIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKVVYVSCNPATLVRDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G K +QPVD FP T H+E V +LE
Sbjct: 422 QEFMEL-------GYQVTKPIQPVDQFPQTTHVESVTVLE 454
>gi|315222549|ref|ZP_07864438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
anginosus F0211]
gi|315188235|gb|EFU21961.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
anginosus F0211]
Length = 453
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 134/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G+E + LYG+ IT+ + FQI+A +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQSGNAIFGKEFHVLYGQDYITDRMLDNDFQIAAPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L + +IV+D + G GTIGL++A+ VK VYG EV+PQA+ ++ +NA+LN+ISNA +V
Sbjct: 300 AELSTE--DIVVDAYSGIGTIGLSVAKHVKEVYGVEVIPQAVENSKKNAELNSISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ N KP +++ DP R G+ IK + + +I+Y+SCN AT ARD+
Sbjct: 358 CDSAENAIKKWLNQGIKPSVIMVDPPRKGLTESFIKSSVSMNPKKIIYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G YKL +QPVD+FP T H+EC+ L++
Sbjct: 418 K-LYQELG-------YKLTKVQPVDLFPMTHHVECIALIQ 449
>gi|346316380|ref|ZP_08857884.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345903003|gb|EGX72773.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 452
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 131/220 (59%), Gaps = 11/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT + +G+EE LYG I + L G+TF+ISA SF+Q N Q EVLY+
Sbjct: 240 VQNVNTRKTSVVLGDEERVLYGPGYIEDVLCGMTFRISAKSFYQINHEQTEVLYQ--RSV 297
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L+ +G E VLD +CG GTIG+ ++R+VK V G E+ A+ DA NAK+N I+N FV
Sbjct: 298 ELLKLNGGETVLDAYCGIGTIGMYVSRFVKQVIGVEINGDAVKDARINAKINQINNIRFV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
D + + D+VI DP R G + IK L+++K +++Y+SCNP T RDL
Sbjct: 358 CDDAGRYMSRLAAEKKRLDVVIMDPPRSGSSEEFIKSLVRMKPSQVLYISCNPQTQIRDL 417
Query: 181 DYLCHGVGDQNIKGCYKLK-SLQPVDMFPHTPHIECVCLL 219
+G Y+++ + PVD+FPHT H+ECVCLL
Sbjct: 418 QVF-ERMG-------YRVQGEMVPVDLFPHTVHVECVCLL 449
>gi|418329071|ref|ZP_12940158.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis 14.1.R1.SE]
gi|365231177|gb|EHM72235.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis 14.1.R1.SE]
Length = 456
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L + + IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVIYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|268611139|ref|ZP_06144866.1| RNA methyltransferase [Ruminococcus flavefaciens FD-1]
Length = 416
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 123/219 (56%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN N +G++ L GK I +TL G+ +S SF+Q NT QAE L+ +
Sbjct: 203 MLNVNPQKTNVILGKKTVCLIGKDTIADTLCGVPVSLSPQSFYQVNTAQAEKLFAEAKRL 262
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A + D E++LDL+CG G IGL++A V V G EVVPQAI DA NAK ISNA F
Sbjct: 263 AAPKKD--ELLLDLYCGAGAIGLSMADTVGKVIGVEVVPQAIEDAKANAKRAGISNAEFF 320
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD +I F KPDI++ DP R G + L++ RIV +SCNP+T ARD
Sbjct: 321 AGDAGEIAAKFAAEGRKPDIIVLDPPRKGCDTLTLDACLEMAPSRIVMISCNPSTAARDA 380
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
YLC + + L L+P D FP T H+ECV L+
Sbjct: 381 AYLC--------ENGFTLDVLRPADFFPRTKHVECVVLM 411
>gi|456014429|gb|EMF48036.1| RNA methyltransferase, TrmA family [Planococcus halocryophilus Or1]
Length = 453
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 126/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TL+GK I + + + F+ISA SF+Q N Q EVLY
Sbjct: 242 VQNINPEKTNVIFGDETLTLWGKDVIEDRIGDVRFEISARSFYQINPVQTEVLYGQALAY 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ K V G E+VPQAI DA RNA+LN ++N F
Sbjct: 302 AQL--TGEETVIDAYCGIGTISLFLAQRAKFVMGVEIVPQAIEDAKRNAELNGLTNTLFE 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + K D+++ DP R G +L+ +LK + R+VYVSCNPAT ARDL
Sbjct: 360 AGPAEQVIPRWYKEGKKADVLVVDPPRKGCDEQLLHTILKQRPTRVVYVSCNPATLARDL 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y+ K +QPVDMFP + H E V LEL
Sbjct: 420 RILED--------GGYRTKEVQPVDMFPQSTHCEAVAWLEL 452
>gi|417809813|ref|ZP_12456494.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius
GJ-24]
gi|335350737|gb|EGM52233.1| tRNA (uracil-5-) -methyltransferase [Lactobacillus salivarius
GJ-24]
Length = 456
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 124/220 (56%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN N +G++ L GK I +TL GL F ISA SF+Q N Q E LY+L +
Sbjct: 244 MLNVNPDKTNVILGKKTIKLAGKDTIQDTLNGLKFDISAQSFYQVNPQQTEKLYQLAIEN 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L +A++ K VYG E+VP+AI DA NA LN++ N F
Sbjct: 304 AELT--GKETVIDAYCGIGTISLNMAKFAKKVYGVEIVPEAIEDAKHNASLNDLDNLDFE 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + KPD+++ DP R G+ LI+ + ++ ++VYVSCNPAT RD+
Sbjct: 362 VGEAEVWMEKWQKQGIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKVVYVSCNPATLVRDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G K +QPVD FP T H+E V +LE
Sbjct: 422 QEFMEL-------GYQVTKPIQPVDQFPQTTHVESVTVLE 454
>gi|406580657|ref|ZP_11055848.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD4E]
gi|406582964|ref|ZP_11058059.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD3E]
gi|406585308|ref|ZP_11060300.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD2E]
gi|410937234|ref|ZP_11369095.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus sp.
GMD5E]
gi|427396214|ref|ZP_18888973.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus durans
FB129-CNAB-4]
gi|430860238|ref|ZP_19477842.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1573]
gi|431005431|ref|ZP_19489077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1578]
gi|431229818|ref|ZP_19502021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1622]
gi|431252345|ref|ZP_19504403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1623]
gi|431293405|ref|ZP_19506873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1626]
gi|431658083|ref|ZP_19523883.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1904]
gi|447912538|ref|YP_007393950.1| RNA methyltransferase, TrmA family [Enterococcus faecium NRRL
B-2354]
gi|404453640|gb|EKA00685.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD4E]
gi|404457370|gb|EKA03914.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD3E]
gi|404462824|gb|EKA08531.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD2E]
gi|410734345|gb|EKQ76265.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus sp.
GMD5E]
gi|425722884|gb|EKU85775.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus durans
FB129-CNAB-4]
gi|430552675|gb|ELA92403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1573]
gi|430561464|gb|ELB00732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1578]
gi|430573804|gb|ELB12582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1622]
gi|430578771|gb|ELB17323.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1623]
gi|430582042|gb|ELB20477.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1626]
gi|430600443|gb|ELB38088.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1904]
gi|445188247|gb|AGE29889.1| RNA methyltransferase, TrmA family [Enterococcus faecium NRRL
B-2354]
Length = 457
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA N+ N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNSLNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
L + Y +K +QPVD+FP T HIE V
Sbjct: 423 KLLA--------EAGYVVKKVQPVDLFPQTHHIELVA 451
>gi|379724436|ref|YP_005316567.1| RNA methyltransferase [Paenibacillus mucilaginosus 3016]
gi|378573108|gb|AFC33418.1| RNA methyltransferase [Paenibacillus mucilaginosus 3016]
Length = 501
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N G+E TL+G I +T+ + F ISA SF+Q N Q EVLY +
Sbjct: 285 VQNINTRETNVIFGDETRTLWGSDVIYDTIGDIRFAISARSFYQVNPVQTEVLYGKALEY 344
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ VYG E+VP+AI DA NA+LN I NA+F
Sbjct: 345 AAL--TGRETVIDAYCGIGTISLFLAQKADQVYGVEIVPEAIEDARANARLNGIRNASFE 402
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + PD+++ DP R G L++ +L ++ R+VYVSCNP+T ARDL
Sbjct: 403 AGPAEVVIPAWRGKGIAPDVIVVDPPRKGCDPALLETILAMRPERVVYVSCNPSTLARDL 462
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G ++ +QPVDMFPHT H+E V +L
Sbjct: 463 RVLE--------DGGFRTVQVQPVDMFPHTVHVESVAVL 493
>gi|225858819|ref|YP_002740329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 70585]
gi|225721367|gb|ACO17221.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 70585]
Length = 453
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 134/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y+LK +QPVD+FP T H+ECV LL+
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVVLLQ 449
>gi|421490851|ref|ZP_15938218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
anginosus SK1138]
gi|400371848|gb|EJP24797.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
anginosus SK1138]
Length = 453
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 134/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G+E + LYG+ IT+ + FQI+A +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQSGNAIFGKEFHVLYGQDYITDRMLDNDFQIAAPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L + +IV+D + G GTIGL++A+ VK VYG EV+PQA+ ++ +NA+LN+ISNA +V
Sbjct: 300 AELSTE--DIVVDAYSGIGTIGLSVAKHVKEVYGVEVIPQAVENSKKNAELNSISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ N KP +++ DP R G+ IK + + +I+Y+SCN AT ARD+
Sbjct: 358 CDSAENAIKKWLNQGIKPSVIMVDPPRKGLTESFIKSSVSMNPKKIIYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G YKL +QPVD+FP T H+EC+ L++
Sbjct: 418 K-LYQELG-------YKLTKVQPVDLFPMTHHVECIALIQ 449
>gi|228473017|ref|ZP_04057774.1| 23S rRNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
gi|228275599|gb|EEK14376.1| 23S rRNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
Length = 469
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 130/218 (59%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T +E +G++ I E + GL F+I+A SFFQTN+ QA LYK++ D A L
Sbjct: 261 INNKPNDTIYDQEVICYHGRNFIYEEMEGLRFKINAKSFFQTNSTQAYELYKVVRDFAAL 320
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI +A+ K V G E VP+AI+DA NA+ N ISN F GD
Sbjct: 321 --TGEELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADAKENAQNNQISNVDFFVGD 378
Query: 124 L-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ N +F PD++I+DP R GMH ++ +L++ R+VYVSCN AT ARDL
Sbjct: 379 MKNVFNEEFITTHGLPDVIITDPPRDGMHKDVVAQILRIAPKRVVYVSCNSATQARDLAL 438
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L + YK+ + PVDMFP T HIE + LLE
Sbjct: 439 L---------QEKYKVVRICPVDMFPQTYHIENIALLE 467
>gi|385262478|ref|ZP_10040582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
SK643]
gi|385190379|gb|EIF37826.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
SK643]
Length = 452
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 133/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G++ LYG+ IT+ + G +QIS +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKDWRILYGQDFITDQMLGNDYQISGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AALKSD--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWTKDGIQPSLILVDPPRKGLTESFIKASAQTGANRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y+LK +QPVD+FP T H+ECV LLE
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLLE 449
>gi|374338341|ref|YP_005095053.1| TrmA family RNA methyltransferase [Streptococcus macedonicus ACA-DC
198]
gi|372284453|emb|CCF02726.1| RNA methyltransferase, TrmA family [Streptococcus macedonicus
ACA-DC 198]
Length = 453
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 132/222 (59%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYGK I +++ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 VQNINDKNTNAIFGKEFKTLYGKDTIVDSMLGNQYEISALSFYQVNTEMAERLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L + +IV+D + G GTIGL+ A+ VK VYG EV+ +A+ DA RNA LN I+NA +V
Sbjct: 300 SDLTPE--DIVIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KP +++ DP R G+ IK + ++ +I Y+SCNPAT ARD+
Sbjct: 358 ADSAEHAMATWSKDGIKPSVILVDPPRKGLTENFIKASVAMQPEKITYISCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G YKL +QPVD+FP+T H+ECV LL+ S
Sbjct: 418 K-LYQELG-------YKLIKVQPVDLFPNTHHVECVVLLQRS 451
>gi|304316267|ref|YP_003851412.1| TrmA family RNA methyltransferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777769|gb|ADL68328.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 452
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 128/217 (58%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S +G E +YG IT+ + F+IS SFFQ N Q +VLY+ + A
Sbjct: 243 NINKSRSRLVMGSENIVIYGDGYITDYIGDKKFEISPLSFFQVNPIQTKVLYEKALEYAD 302
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G EIV+D++CG GTI + A++VKHVYG EVV A+ DA RNA +N I+NA F+ G
Sbjct: 303 LK--GDEIVIDVYCGIGTISIFFAKYVKHVYGIEVVSDAVEDAKRNAAINGINNADFIAG 360
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ PDI+I DP R G+ ++ +K+ +I+Y+SCNP T ARDL
Sbjct: 361 KAEHVMKRLYKEGLMPDIIILDPPRRGLDKDVVDECVKMNPQKIIYISCNPTTLARDLR- 419
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ + N YK + +QPVDMFP+T H+ECV L+
Sbjct: 420 ----IFEDN---GYKTEKVQPVDMFPYTYHVECVVLM 449
>gi|420200721|ref|ZP_14706362.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM031]
gi|394267679|gb|EJE12263.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM031]
Length = 456
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L + + IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVIYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDKTFLTTLLKLNPKRIVYISCNPSTQHRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|337751469|ref|YP_004645631.1| RNA methyltransferase [Paenibacillus mucilaginosus KNP414]
gi|336302658|gb|AEI45761.1| Uncharacterized RNA methyltransferase [Paenibacillus mucilaginosus
KNP414]
Length = 442
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N G+E TL+G I +T+ + F ISA SF+Q N Q EVLY +
Sbjct: 226 VQNINTRETNVIFGDETRTLWGSDVIYDTIGDIRFAISARSFYQVNPVQTEVLYGKALEY 285
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ VYG E+VP+AI DA NA+LN I NA+F
Sbjct: 286 AAL--TGRETVIDAYCGIGTISLFLAQKADRVYGVEIVPEAIEDARANARLNGIRNASFE 343
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + PD+++ DP R G L++ +L ++ R+VYVSCNP+T ARDL
Sbjct: 344 AGPAEVVIPAWRGKGIAPDVIVVDPPRKGCDPALLETILAMRPERVVYVSCNPSTLARDL 403
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G ++ +QPVDMFPHT H+E V +L
Sbjct: 404 RVLE--------DGGFRTVQVQPVDMFPHTVHVESVAVL 434
>gi|307704726|ref|ZP_07641623.1| 23S rRNA uracil-5-methyltransferase [Streptococcus mitis SK597]
gi|307621705|gb|EFO00745.1| 23S rRNA uracil-5-methyltransferase [Streptococcus mitis SK597]
Length = 452
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 136/220 (61%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N+ G+E TLYG+ IT+ + G +QI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNSIFGKEWRTLYGRDFITDQMLGNDYQIAGPAFYQVNTGMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L++D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA+LN+ISNA +V
Sbjct: 300 AALKED--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNHISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPSLILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y+LK +QPVD+FP T H+ECV LLE
Sbjct: 418 K-LYRELG-------YELKKVQPVDLFPQTHHVECVSLLE 449
>gi|430851702|ref|ZP_19469437.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1258]
gi|430542284|gb|ELA82392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1258]
Length = 457
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYVVKKVQPVDLFPQTHHIELVA 451
>gi|357057712|ref|ZP_09118570.1| hypothetical protein HMPREF9334_00287 [Selenomonas infelix ATCC
43532]
gi|355374960|gb|EHG22251.1| hypothetical protein HMPREF9334_00287 [Selenomonas infelix ATCC
43532]
Length = 465
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+ T N +G + L+G+ I ++L L F IS SFFQ NT QAE LY+ A
Sbjct: 254 QNIQTYRNNVIMGRDTQLLWGRPTIIDSLGRLNFHISPRSFFQVNTRQAERLYEQALAYA 313
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G+E V+D +CGTGTI L LA+ + VYG E+V AI DA +NA+ N++ NA F+
Sbjct: 314 DL--HGTETVIDAYCGTGTITLFLAQKARKVYGIEIVQPAILDARKNARDNHVKNAEFIV 371
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
GD + +PD+V+ DP R G +++ +K RIVYVSCNPAT ARDL
Sbjct: 372 GDATAVMPALYKQGIRPDVVVVDPPRAGCTETVLRTFANMKPQRIVYVSCNPATLARDLA 431
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L G+G Y + +QPVD+FP T H+E VCLL+
Sbjct: 432 IL-KGLG-------YLAQEVQPVDLFPQTSHVENVCLLK 462
>gi|317488920|ref|ZP_07947450.1| hypothetical protein HMPREF1023_01149 [Eggerthella sp. 1_3_56FAA]
gi|316911994|gb|EFV33573.1| hypothetical protein HMPREF1023_01149 [Eggerthella sp. 1_3_56FAA]
Length = 405
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 125/221 (56%), Gaps = 11/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N +GE E TLYG I + L GL+F+IS+ SF+Q N Q EVLY+ D
Sbjct: 184 VQNVNERQTNVILGEREQTLYGPGFILDKLCGLSFRISSQSFYQVNAVQTEVLYERAIDL 243
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQAISDACRNAKLNNISNATF 119
AG GSE +D +CGTGTIGL A R + V G + V A+ DA NAK N + NA F
Sbjct: 244 AGF--TGSETAIDAYCGTGTIGLVAAKRGARQVIGVDTVASAVRDARENAKHNGVENARF 301
Query: 120 VQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD + A D+++ DP R G + + + L RIVY+SCNP T RD
Sbjct: 302 AVGDAGAFMRERAAAGDAVDVLLMDPPRAGSSEEFLAAAVTLAPRRIVYISCNPTTQVRD 361
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +L +G Y ++++QPVDMFPHT HIE + L+E
Sbjct: 362 LAFLRQ-------RG-YAVRTVQPVDMFPHTDHIETIALVE 394
>gi|30260503|ref|NP_842880.1| RNA methyltransferase [Bacillus anthracis str. Ames]
gi|47525600|ref|YP_016949.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
gi|49183346|ref|YP_026598.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
gi|65317755|ref|ZP_00390714.1| COG2265: SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Bacillus anthracis str.
A2012]
gi|167634215|ref|ZP_02392537.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442]
gi|167640112|ref|ZP_02398379.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193]
gi|170688363|ref|ZP_02879572.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465]
gi|177653642|ref|ZP_02935781.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174]
gi|190567579|ref|ZP_03020492.1| RNA methyltransferase, TrmA family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227812998|ref|YP_002813007.1| TrmA family RNA methyltransferase [Bacillus anthracis str. CDC 684]
gi|229601940|ref|YP_002864948.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248]
gi|254686717|ref|ZP_05150575.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
CNEVA-9066]
gi|254724793|ref|ZP_05186576.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
A1055]
gi|254742321|ref|ZP_05200007.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
Kruger B]
gi|254756096|ref|ZP_05208125.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
Vollum]
gi|254761914|ref|ZP_05213763.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
Australia 94]
gi|386734182|ref|YP_006207363.1| RNA methyltransferase [Bacillus anthracis str. H9401]
gi|421507729|ref|ZP_15954647.1| RNA methyltransferase [Bacillus anthracis str. UR-1]
gi|421638900|ref|ZP_16079494.1| RNA methyltransferase [Bacillus anthracis str. BF1]
gi|50401540|sp|Q81ZD6.1|Y333_BACAN RecName: Full=Uncharacterized RNA methyltransferase
BA_0333/GBAA_0333/BAS0318
gi|30253871|gb|AAP24366.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Ames]
gi|47500748|gb|AAT29424.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. 'Ames
Ancestor']
gi|49177273|gb|AAT52649.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. Sterne]
gi|167511923|gb|EDR87302.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0193]
gi|167530529|gb|EDR93244.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0442]
gi|170667695|gb|EDT18449.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0465]
gi|172081222|gb|EDT66297.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0174]
gi|190561366|gb|EDV15338.1| RNA methyltransferase, TrmA family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227007157|gb|ACP16900.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. CDC
684]
gi|229266348|gb|ACQ47985.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0248]
gi|384384034|gb|AFH81695.1| RNA methyltransferase [Bacillus anthracis str. H9401]
gi|401822164|gb|EJT21316.1| RNA methyltransferase [Bacillus anthracis str. UR-1]
gi|403393815|gb|EJY91057.1| RNA methyltransferase [Bacillus anthracis str. BF1]
Length = 458
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 128/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 307 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +Q VDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQLVDMFPHTTHVECVAWLKL 457
>gi|334137487|ref|ZP_08510920.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
HGF7]
gi|333604941|gb|EGL16322.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
HGF7]
Length = 683
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 123/218 (56%), Gaps = 10/218 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+NT N G L+G I + + + F ISA SFFQ N Q E LY + A
Sbjct: 461 QNINTGRTNVIFGATTRVLWGHEVIYDYIGDVKFAISARSFFQVNPVQTEALYGKALEYA 520
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E V+D +CG GTI L L + K VYG E+VP+AI DA RNA+LN I NA F
Sbjct: 521 GL--TGGETVVDAYCGIGTISLFLGKHAKKVYGVEIVPEAIEDAKRNAELNGIRNAEFAV 578
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + ++ A +PD+++ DP R G +L+ +L+L R+VYVSCN +T ARDL
Sbjct: 579 GGAEDVLPEWQRAGVRPDVIVVDPPRKGCDERLLDTILQLCPERVVYVSCNASTLARDLR 638
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y+ +QPVDMFPHT H+E V LL
Sbjct: 639 VLED--------GGYRTVCVQPVDMFPHTVHVESVALL 668
>gi|430822567|ref|ZP_19441145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0120]
gi|430865127|ref|ZP_19480885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1574]
gi|431743088|ref|ZP_19531969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2071]
gi|431764148|ref|ZP_19552691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4215]
gi|430443144|gb|ELA53141.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E0120]
gi|430553205|gb|ELA92906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1574]
gi|430607452|gb|ELB44772.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2071]
gi|430631333|gb|ELB67655.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E4215]
Length = 457
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYVVKKVQPVDLFPQTHHIELVA 451
>gi|399887891|ref|ZP_10773768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium arbusti
SL206]
Length = 483
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 131/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N +G + TL+GKS+I + + F IS SFFQ N Q E+LY +
Sbjct: 272 VQNINTKNTNVILGLKCKTLWGKSDIVDNIGDFKFNISPLSFFQVNPVQTEILYNKALEY 331
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G+EIV D +CGTGTI L L++ K VYG E++P+AI +A NAK N+I N F+
Sbjct: 332 ANLQ--GNEIVFDAYCGTGTISLFLSQKAKKVYGVEIIPEAIENAKINAKQNDIDNVEFM 389
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD K+ + N+ K D+VI DP R G L++ + K+ +IVYVSC+P T ARDL
Sbjct: 390 VGDAEKVIPEIINSGVKADVVIVDPPRKGCEKSLLEAMAKMNPEKIVYVSCDPGTLARDL 449
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YK +QPVDMFP T H+ECV +
Sbjct: 450 SIL-DNLG-------YKTLEVQPVDMFPMTGHVECVVRI 480
>gi|406590447|ref|ZP_11064814.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD1E]
gi|404469280|gb|EKA14092.1| 23S rRNA (uracil-5-)-methyltransferase [Enterococcus sp. GMD1E]
Length = 407
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 195 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 254
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA N+ N I N +
Sbjct: 255 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNSLNNKIENVHYE 312
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 313 VGKAEKVMKKWQEKGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 372
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
L + Y +K +QPVD+FP T HIE V
Sbjct: 373 KLLA--------EAGYVVKKVQPVDLFPQTHHIELVA 401
>gi|386727175|ref|YP_006193501.1| RNA methyltransferase [Paenibacillus mucilaginosus K02]
gi|384094300|gb|AFH65736.1| RNA methyltransferase [Paenibacillus mucilaginosus K02]
Length = 442
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N G+E TL+G I +T+ + F ISA SF+Q N Q EVLY +
Sbjct: 226 VQNINTRETNVIFGDETRTLWGSDVIYDTIGDIRFAISARSFYQVNPVQTEVLYGKALEY 285
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ VYG E+VP+AI DA NA+LN I NA+F
Sbjct: 286 AAL--TGRETVIDAYCGIGTISLFLAQKADQVYGVEIVPEAIEDARANARLNGIRNASFE 343
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + PD+++ DP R G L++ +L ++ R+VYVSCNP+T ARDL
Sbjct: 344 AGPAEVVIPAWRAKGIAPDVIVVDPPRKGCDPALLETILAMRPERVVYVSCNPSTLARDL 403
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G ++ +QPVDMFPHT H+E V +L
Sbjct: 404 RVLE--------DGGFRTVQVQPVDMFPHTVHVESVAVL 434
>gi|407978257|ref|ZP_11159090.1| TrmA family RNA methyltransferase [Bacillus sp. HYC-10]
gi|407415264|gb|EKF36871.1| TrmA family RNA methyltransferase [Bacillus sp. HYC-10]
Length = 459
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 125/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N G+E L+G+ I +T+ + F ISA SF+Q N Q +VLY +
Sbjct: 248 VQNVNSKKTNVIFGDETTVLWGEEYIYDTIGDIKFAISARSFYQVNPAQTKVLYDKALEY 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ VYG E+VP+AI DA RNA LN I N F
Sbjct: 308 AELQ--GEETVIDAYCGIGTISLFLAQKAGRVYGVEIVPEAIEDAKRNASLNGIKNVEFA 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + ++ K D ++ DP R G L+ ++K+K R+VYVSCNP T ARDL
Sbjct: 366 VGEAETVIPNWYKEGIKADTLVVDPPRKGCDEALLDTIIKMKPNRVVYVSCNPGTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y + +QPVDMFPHT H+ECV L
Sbjct: 426 RILE--------DGGYVTEEVQPVDMFPHTSHVECVASL 456
>gi|282859473|ref|ZP_06268578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia
JCVIHMP010]
gi|424900901|ref|ZP_18324443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia DSM
20514]
gi|282587701|gb|EFB92901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia
JCVIHMP010]
gi|388593101|gb|EIM33340.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia DSM
20514]
Length = 476
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 128/219 (58%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
VN GN + + + L+ G +I ET+ L F++ SF+QTNT QA LY + A
Sbjct: 265 VNNQKGNDTFNDLDLILFKGNDHIFETMEDLRFKVGPKSFYQTNTEQAYHLYDVARRFAN 324
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E+V DL+ GTGTI +A+ K V G E VP+AI DA N+++N I N F G
Sbjct: 325 L--TGEELVYDLYTGTGTIANFVAKRAKKVIGIEYVPEAIEDAKVNSEINKIQNTLFYAG 382
Query: 123 DLNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I + F +PD++I+DP R GMH ++ +L RIVYVSCNPAT ARDL
Sbjct: 383 DMKDILTESFVQEHGRPDVIITDPPRAGMHPDVVNVILGAHPKRIVYVSCNPATQARDLA 442
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YK+ ++QPVDMFPHTPH+E V LLE
Sbjct: 443 LL---------DVDYKVVAVQPVDMFPHTPHVENVVLLE 472
>gi|165871358|ref|ZP_02216006.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488]
gi|170708771|ref|ZP_02899208.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389]
gi|164712842|gb|EDR18371.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0488]
gi|170126350|gb|EDS95240.1| RNA methyltransferase, TrmA family [Bacillus anthracis str. A0389]
Length = 454
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 128/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 243 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 303 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 361 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +Q VDMFPHT H+ECV L+L
Sbjct: 421 KVLE--------EGGYKTQEVQLVDMFPHTTHVECVAWLKL 453
>gi|294618092|ref|ZP_06697689.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1679]
gi|291595664|gb|EFF26960.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1679]
Length = 457
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA N+ N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNSLNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
L + Y +K +QPVD+FP T HIE V
Sbjct: 423 KLLT--------EAGYVVKKVQPVDLFPQTHHIELVA 451
>gi|288925116|ref|ZP_06419052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccae D17]
gi|288338306|gb|EFC76656.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccae D17]
Length = 480
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 127/212 (59%), Gaps = 13/212 (6%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N + G+ ++Y G +I E + GL F++ SF+QTNT QA LY + + + L G
Sbjct: 277 NDTFGDLPISVYKGNDHIFEVMEGLRFKVGPKSFYQTNTEQAYHLYSVAREFSQL--TGD 334
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
E+V DL+ GTGTI +AR K V G E VP+AI DA N+++N I N F GD+ I
Sbjct: 335 ELVYDLYTGTGTIANFVAREAKQVIGIEYVPEAIEDAKVNSEINGIDNTLFYAGDMKDIL 394
Query: 129 GD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 187
D F +PD++I+DP R GMH ++ +L RIVYVSCNPAT ARDL+ L
Sbjct: 395 NDEFIRQHGRPDVIITDPPRAGMHADVVNTILHAAPRRIVYVSCNPATQARDLNLL---- 450
Query: 188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Y+++ +QPVDMFPHTPH+E V LL
Sbjct: 451 -----DVDYRVEEVQPVDMFPHTPHVENVVLL 477
>gi|254739058|ref|ZP_05196760.1| RNA methyltransferase, TrmA family protein [Bacillus anthracis str.
Western North America USA6153]
Length = 404
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 128/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 193 VQNVNPKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 252
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG+E V+D +CG G+I L LA+ K VYG E+VP+AI DA RNA LNN++NA F
Sbjct: 253 AKL--DGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFG 310
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 311 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDL 370
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +Q VDMFPHT H+ECV L+L
Sbjct: 371 KVLE--------EGGYKTQEVQLVDMFPHTTHVECVAWLKL 403
>gi|291522721|emb|CBK81014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprococcus catus
GD/7]
Length = 448
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 121/217 (55%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVN + +GE TLYGK I +TL G TF IS ++F+Q N Q E+LY+ D AG
Sbjct: 238 NVNDQNTSMVLGERNITLYGKGYIVDTLCGHTFAISPSAFYQVNPVQTEILYQTAMDYAG 297
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V+D +CG GTIG+ A K V G E+ P ++ DA NA+ NNI N TF Q
Sbjct: 298 L--TGKETVVDAYCGIGTIGIIAADKAKSVIGVELNPASVKDARNNARHNNIGNITFYQN 355
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
D + + K D++ DP R G + + L RIVY+SCNP T ARDL++
Sbjct: 356 DAERFLNEMQEQNAKADVIFMDPPRAGSTHSFMASAISLNPDRIVYISCNPETLARDLEF 415
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L K Y + +QPVDMFP T H+E VCLL
Sbjct: 416 LK--------KHQYTAEKIQPVDMFPFTTHMETVCLL 444
>gi|306829492|ref|ZP_07462682.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
6249]
gi|304428578|gb|EFM31668.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus mitis ATCC
6249]
Length = 452
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQIS +F+Q NT AE LY+ D
Sbjct: 240 MQNINDRNTNAIFGKEWKTLYGQDYITDQMLGNDFQISGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR+D ++V+D + G GTIGL++A+ VK VYG EV+ +A+ ++ +NA LNNI+NA +V
Sbjct: 300 AELRED--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIAEAVENSQKNAALNNITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWFKEGIQPSVILVDPPRKGLTESFIKASAQTGANRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLL 448
>gi|431412486|ref|ZP_19511921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1630]
gi|431759374|ref|ZP_19547988.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3346]
gi|430589441|gb|ELB27569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1630]
gi|430626174|gb|ELB62760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3346]
Length = 457
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGVKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYVVKKVQPVDLFPQTHHIELVA 451
>gi|418324710|ref|ZP_12935940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
pettenkoferi VCU012]
gi|365224983|gb|EHM66238.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
pettenkoferi VCU012]
Length = 454
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 124/218 (56%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+NTS N +G++ L+G I + L + F+IS SF+Q N Q E LY+ D A
Sbjct: 244 QNINTSHSNVIMGKKSILLFGAEQIDDRLSDVEFKISDQSFYQINASQTEKLYQKALDYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L+ G E+VLD +CG GTIGL +A KHVYG EV+P AI DA NA N +N TFV
Sbjct: 304 DLQ--GEEVVLDTYCGIGTIGLYMAPKAKHVYGVEVIPDAIEDARLNATRNGFNNTTFVP 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + +PD+V+ DP R G + I+ L +L+ +I+Y+SCNPAT RD+
Sbjct: 362 GKAEEVILKWKEQGIRPDVVMVDPPRKGCDERFIQTLRELQPKKIIYISCNPATQQRDVT 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L K Y L + PVDMFP T H+E V L
Sbjct: 422 QL---------KDLYDLVEITPVDMFPQTTHVETVAQL 450
>gi|342218738|ref|ZP_08711342.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera sp. UPII
135-E]
gi|341588866|gb|EGS32238.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera sp. UPII
135-E]
Length = 491
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 135/221 (61%), Gaps = 14/221 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N +G + TLYG+ I + + L F ISA SFFQ N+ QA+ LY+ +
Sbjct: 188 IQNINTGHTNVILGRKTRTLYGQDTIHDAIGNLRFHISAQSFFQVNSEQAQRLYEKALEF 247
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G+EIV D++CGTGTI L LA+ K VYG E+VP AI DA RNA+ N++ NA F+
Sbjct: 248 ADLK--GNEIVADVYCGTGTITLFLAQKAKQVYGIEIVPSAIKDAIRNARDNHVKNAEFI 305
Query: 121 QGD-LNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD + K+ N +P +++ DP R G +++ + + + R+VYVSCNPAT ARD
Sbjct: 306 LGDAVYKLPELIKNGV-RPQVIVLDPPRAGCGEPVLRAIGRSQPERVVYVSCNPATLARD 364
Query: 180 LDYL-CHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L L +G YK + +QPVDMF T H+E V LL
Sbjct: 365 LACLQTYG---------YKTERVQPVDMFSRTHHVETVALL 396
>gi|315608157|ref|ZP_07883149.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella buccae ATCC
33574]
gi|315250126|gb|EFU30123.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella buccae ATCC
33574]
Length = 490
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 127/212 (59%), Gaps = 13/212 (6%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N + G+ ++Y G +I E + GL F++ SF+QTNT QA LY + + + L G
Sbjct: 287 NDTFGDLPISVYKGNDHIFEVMEGLRFKVGPKSFYQTNTEQAYHLYSVAREFSQL--TGD 344
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
E+V DL+ GTGTI +AR K V G E VP+AI DA N+++N I N F GD+ I
Sbjct: 345 ELVYDLYTGTGTIANFVAREAKQVIGIEYVPEAIEDAKVNSEINGIDNTLFYAGDMKDIL 404
Query: 129 GD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 187
D F +PD++I+DP R GMH ++ +L RIVYVSCNPAT ARDL+ L
Sbjct: 405 NDEFIRQHGRPDVIITDPPRAGMHADVVNTILHAAPRRIVYVSCNPATQARDLNLL---- 460
Query: 188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Y+++ +QPVDMFPHTPH+E V LL
Sbjct: 461 -----DVDYRVEEVQPVDMFPHTPHVENVVLL 487
>gi|402304688|ref|ZP_10823753.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. MSX73]
gi|400380815|gb|EJP33625.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. MSX73]
Length = 501
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 127/212 (59%), Gaps = 13/212 (6%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N + G+ ++Y G +I E + GL F++ SF+QTNT QA LY + + + L G
Sbjct: 298 NDTFGDLPISVYKGNDHIFEVMEGLRFKVGPKSFYQTNTEQAYHLYSVAREFSQL--TGD 355
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
E+V DL+ GTGTI +AR K V G E VP+AI DA N+++N I N F GD+ I
Sbjct: 356 ELVYDLYTGTGTIANFVAREAKQVIGIEYVPEAIEDAKVNSEINGIDNTLFYAGDMKDIL 415
Query: 129 GD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 187
D F +PD++I+DP R GMH ++ +L RIVYVSCNPAT ARDL+ L
Sbjct: 416 NDEFIRQHGRPDVIITDPPRAGMHADVVNTILHAAPRRIVYVSCNPATQARDLNLL---- 471
Query: 188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Y+++ +QPVDMFPHTPH+E V LL
Sbjct: 472 -----DVDYRVEEVQPVDMFPHTPHVENVVLL 498
>gi|402837954|ref|ZP_10886469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium OBRC8]
gi|402274385|gb|EJU23569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium OBRC8]
Length = 544
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 130/222 (58%), Gaps = 15/222 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N + ++ LYG+ I + + LTF I NSF+Q N+ Q E +YK D
Sbjct: 240 VQNVNTKKTNVILSDKNILLYGREYIQDMIENLTFNIYPNSFYQVNSIQMEKMYKRALDY 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G+E V DL+CG GTI L L++ K VYG EVV QAI A +NAK+NNI NA F+
Sbjct: 300 ANLQ--GTETVYDLYCGIGTITLLLSQKCKTVYGIEVVAQAIESAKQNAKINNIENAKFI 357
Query: 121 QGDLNKIGGDFGNAFPK---PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCA 177
G K+ + N K P++++ DP R G K++ +L +K +I+Y+SCNP+T A
Sbjct: 358 CG---KVEDEIENLVAKSNMPNVIVLDPARKGCEEKVLDTILNVKPEKIIYISCNPSTLA 414
Query: 178 RDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
RDL L Y+LK + P D+F HT HIE V LL
Sbjct: 415 RDLKKLLSTQE-------YELKEVTPYDLFSHTMHIETVALL 449
>gi|420174159|ref|ZP_14680613.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM061]
gi|394245299|gb|EJD90614.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM061]
Length = 456
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L + + IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVIYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RI+Y+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIIYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|416127636|ref|ZP_11597002.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis FRI909]
gi|319399862|gb|EFV88109.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis FRI909]
Length = 456
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L + + IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVIYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPDLVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|407472955|ref|YP_006787355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium acidurici
9a]
gi|407049463|gb|AFS77508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium acidurici
9a]
Length = 454
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 128/219 (58%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N + +T +E LYG+ ITE L GL F+ISA SFFQTN+ AE LY ++ D
Sbjct: 244 LHTINDGLSDTVQSDETRILYGQDYITEELLGLKFKISAFSFFQTNSLGAEKLYSVVRDF 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AG D ++V DL+CGTGTI +A K VYG E+V +A+ A NA+LN + N F+
Sbjct: 304 AGETKD--KVVFDLYCGTGTIAQIVAPIAKKVYGIEIVEEAVERAKENAELNGLDNCEFI 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + KPDI+I DP R G+H K I ++ VYVSC P + ARDL
Sbjct: 362 AGDVMEKVKELTE---KPDIIILDPPRDGIHPKAIHKIIDFAPEEFVYVSCKPTSLARDL 418
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
I+ YK++ +Q VDMFP TPH+E V LL
Sbjct: 419 PVF--------IERGYKVEKVQCVDMFPMTPHVESVILL 449
>gi|406883781|gb|EKD31298.1| hypothetical protein ACD_77C00346G0005 [uncultured bacterium]
Length = 467
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/204 (45%), Positives = 122/204 (59%), Gaps = 12/204 (5%)
Query: 18 YTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCG 77
YT GK +I E + L F+IS SF+QTN+ QA LY ++ D A L +G+EIV DL+ G
Sbjct: 273 YTYSGKDSIIEVMENLKFRISPKSFYQTNSEQAYRLYSVVRDFASL--NGNEIVYDLYTG 330
Query: 78 TGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD-FGNAFP 136
TGTI L LA K V G E VP+AI DA NAK N + N F GD+ I F
Sbjct: 331 TGTIALFLASLAKKVIGVEYVPEAIEDAWINAKENKVENCMFYAGDMKDILTPLFLKENG 390
Query: 137 KPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCY 196
KPD+++ DP R G+H + K +++ + +IVYVSCNPAT ARD+ + Y
Sbjct: 391 KPDVIVLDPPRSGIHPDVAKVIVEAEPDKIVYVSCNPATQARDIALMNEK---------Y 441
Query: 197 KLKSLQPVDMFPHTPHIECVCLLE 220
+ +QPVDMFPHT H+E V L+E
Sbjct: 442 TITKVQPVDMFPHTHHLENVVLME 465
>gi|386318836|ref|YP_006014999.1| TrmA family RNA methyltransferase [Staphylococcus pseudintermedius
ED99]
gi|323464007|gb|ADX76160.1| RNA methyltransferase, TrmA family [Staphylococcus pseudintermedius
ED99]
Length = 454
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 124/217 (57%), Gaps = 11/217 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N T+ N +G T++GK I +TL LTF+I SF+Q N Q + LY+ A
Sbjct: 245 NFQTNKTNVIMGHTSKTIFGKDIIEDTLDDLTFEIGDLSFYQINVTQTQKLYRQALQYAN 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+VLD +CG GTI L +A +HVYG EVVP+AI DA RNA+ N ++N TFV G
Sbjct: 305 LT--GNEVVLDAYCGIGTISLFMAPHAQHVYGVEVVPEAIEDAKRNARYNQLNNTTFVAG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + +PD+V DP R G I+ L L RIVYVSCNP+T RD++
Sbjct: 363 AAEDVILKWQQDGIQPDVVTVDPPRKGCDATFIETLNALAPKRIVYVSCNPSTQLRDIEM 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+LK + PVDMFPHT H+E V LL
Sbjct: 423 LS---------TQYELKEMTPVDMFPHTTHVETVALL 450
>gi|205372478|ref|ZP_03225291.1| RNA methyltransferase-like protein [Bacillus coahuilensis m4-4]
Length = 456
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 129/218 (59%), Gaps = 10/218 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
+N+N+ N +GEE L+G+ I + + + F IS SF+Q N Q +VLY + A
Sbjct: 246 HNINSKRTNVIMGEETRILWGERYIYDYIGDVRFAISPRSFYQVNPEQTKVLYDKALEFA 305
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G+E V+D +CG GTI L LA KHVYG E+VP+AI DA RNA+LN +N F
Sbjct: 306 GL--TGNETVIDAYCGIGTISLFLAERAKHVYGVEIVPEAIVDAKRNAELNGFTNVEFEV 363
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + K D+++ DP R G KL+ + K+K ++VYVSCNPAT ARDL
Sbjct: 364 GPAEDVIPAWYDRGIKADVLVVDPPRKGCDEKLLDTIKKMKPEKVVYVSCNPATLARDLK 423
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G G Y ++ +QPVDMFP T H+E V LL
Sbjct: 424 VLQEG-------GYYTVE-IQPVDMFPQTMHVEAVALL 453
>gi|418972491|ref|ZP_13520616.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pseudopneumoniae ATCC BAA-960]
gi|383352008|gb|EID29762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pseudopneumoniae ATCC BAA-960]
Length = 451
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 134/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G +QI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDFITDQMLGNDYQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L++D ++V+D + G GTIG+++A+ VK VYG EV+P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKED--DVVIDAYSGIGTIGISVAKHVKEVYGVEVIPEAVENSKKNAQLNNISNANYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPSLILVDPPRKGLTESFIKASTQTGANRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVALL 448
>gi|374386982|ref|ZP_09644475.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Odoribacter laneus YIT
12061]
gi|373223028|gb|EHP45385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Odoribacter laneus YIT
12061]
Length = 470
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 129/221 (58%), Gaps = 12/221 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M +N +T +E GK +I E + GL F+I SF+QTN+ QA LYK +
Sbjct: 256 MYVINEKANDTLTDQEIICYSGKDHIFEEMEGLKFKIGPKSFYQTNSGQAYQLYKRTREL 315
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E V DL+ GTGTI ++R V G E VP+AI DA N+ LN ISN TF
Sbjct: 316 AGL--TGKETVYDLYTGTGTIANFVSREAAQVIGIEYVPEAIEDAKINSALNQISNTTFY 373
Query: 121 QGDLNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD+ + + F +P+++I+DP R GMH +I +L+ RIVYVSCN AT ARD
Sbjct: 374 AGDMKDVLNEKFIAHHGRPEVIITDPPRAGMHPDVIHTILQAGPERIVYVSCNSATQARD 433
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ Q + Y++K++QPVDMFPHT H+E + LLE
Sbjct: 434 I---------QLMDPFYQVKAVQPVDMFPHTHHVENIVLLE 465
>gi|315645532|ref|ZP_07898656.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex
V453]
gi|315279010|gb|EFU42320.1| RNA methyltransferase, TrmA family protein [Paenibacillus vortex
V453]
Length = 532
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 128/218 (58%), Gaps = 10/218 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N + G+ +L+G ++ E+L L F +S +FFQ N Q LY+ + AG
Sbjct: 320 NINPKKTSLIFGDRTISLWGAESMQESLSDLQFSLSPRAFFQLNPQQTVKLYESVRAAAG 379
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V+D +CGTGTIGL LA + K V G E +P+A+ DA NA+ N +NA+F G
Sbjct: 380 L--TGKETVIDAYCGTGTIGLWLAPYAKEVRGIETIPEAVEDAKANAQRNGRANASFHVG 437
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + KPD++I+DP R G+ + ++ +L+ K R VYVSCNP+T A+D
Sbjct: 438 QAEELLPRWVKEGMKPDVIIADPPRTGLDSRFLETVLRTKPKRFVYVSCNPSTLAKDCKV 497
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L + G Y+L+ +QPVDMFP T H+EC LL+
Sbjct: 498 L--------LDGGYELEWVQPVDMFPQTSHVECTVLLK 527
>gi|343525700|ref|ZP_08762655.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
gi|343395970|gb|EGV08508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
Length = 464
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 134/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N NT G++ TL+G+ IT+ + FQI+A +F+Q NT AE LY+ D
Sbjct: 168 MQNINDQNTNTIFGKDWQTLHGRDYITDRMLNNDFQIAAPAFYQVNTEMAEKLYQTAIDF 227
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA++N I+N +V
Sbjct: 228 SELAAD--DVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAEINGITNTHYV 285
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ KPD+++ DP R G+ I+ + ++ +I+Y+SCNPAT ARD+
Sbjct: 286 CDSAENAMANWSKQDIKPDVILVDPPRKGLTESFIESSVSMEPKKIIYISCNPATMARDI 345
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKLK +QPVD+FP T H+E V LL
Sbjct: 346 K-LYQELG-------YKLKKVQPVDLFPQTHHVETVALL 376
>gi|335038780|ref|ZP_08531987.1| RNA methyltransferase, TrmA family [Caldalkalibacillus thermarum
TA2.A1]
gi|334181319|gb|EGL83877.1| RNA methyltransferase, TrmA family [Caldalkalibacillus thermarum
TA2.A1]
Length = 466
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 129/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N G+E L+G+ I + + + F ISA SFFQ N Q +VLY+
Sbjct: 249 VQNINTKRTNVIFGDESKVLWGEPYIYDKIGDIRFAISARSFFQVNPVQTQVLYEKAMAY 308
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G E V+D +CG GTI L LA+ K V G EVVP+A++DA RNA+LN ++N F
Sbjct: 309 ADL--EGHETVIDAYCGIGTISLFLAQKAKQVLGVEVVPEAVADAKRNARLNGMTNVQFA 366
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ KI + K D+++ DP R G L+K ++++K R+VY+SCNP+T ARD+
Sbjct: 367 VGEAEKIIPWWRAQGIKADVIVVDPPRKGCDGSLLKTIIEMKPERVVYISCNPSTLARDI 426
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G ++ + +QPVDMFPHT H+E L
Sbjct: 427 KILE--------AGGFETREVQPVDMFPHTSHVEVAAKL 457
>gi|392989350|ref|YP_006487943.1| TrmA family RNA methyltransferase [Enterococcus hirae ATCC 9790]
gi|392336770|gb|AFM71052.1| TrmA family RNA methyltransferase [Enterococcus hirae ATCC 9790]
Length = 457
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+S I + L G T++IS+ SF+Q NT Q E LY+ +
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRSYIEDQLLGKTYRISSKSFYQVNTEQTEKLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ + + V+D + G GTIGL+LA VK VYG E+VP+AI DA NA N I NA +
Sbjct: 305 AALQKEDT--VIDAYSGIGTIGLSLADKVKEVYGMELVPEAIEDAQFNALTNKIENAHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + + KP +++ DP R G+ + I + + ++VY+SCNPAT ARD
Sbjct: 363 VGKAETVMKKWQDKGVKPSVIVVDPPRKGLDARFIASAIDMAPAKLVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ Y++K +QPVD+FP T H+E V LL
Sbjct: 423 KLFA--------ESGYEVKKVQPVDLFPQTHHVELVALL 453
>gi|422883897|ref|ZP_16930346.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK49]
gi|332361995|gb|EGJ39797.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK49]
Length = 466
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 137/220 (62%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G++ TLYG++ IT+ + G FQI+A +F+Q NT AE LY+ D
Sbjct: 253 MQNINDQPGNAIFGKDWRTLYGQNYITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTAIDF 312
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA +N I+NA++V
Sbjct: 313 SELTAD--DVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAAINGITNASYV 370
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ ++ + D+++ DP R G+ IK + ++ +I Y+SCN AT ARD+
Sbjct: 371 CAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDI 430
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y+LK +QPVD+FP T H+ECV LL+
Sbjct: 431 K-LYQELG-------YELKKVQPVDLFPQTHHVECVVLLQ 462
>gi|402562586|ref|YP_006605310.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis HD-771]
gi|401791238|gb|AFQ17277.1| tRNA (Uracil-5-)-methyltransferase [Bacillus thuringiensis HD-771]
Length = 458
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N G++ LYG I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNVNTKRTNVIFGDKTTVLYGSEYIYDFIGDIKFAISARSFYQVNPEQTKVLYDKTLEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G+E V+D +CG G+I L LA+ K VYG E+V +AI DA RNA LNN++NA F
Sbjct: 307 AKL--NGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVLEAIEDANRNAALNNMTNAEFG 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L+ ++ +K R+VYVSCNPAT ARDL
Sbjct: 365 VGEAEVVIPKWYKEGVIADTMVVDPPRKGCDEALLNTIIDMKPNRVVYVSCNPATLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L +G YK + +QPVDMFPHT H+ECV L+L
Sbjct: 425 KVLE--------EGGYKTQEVQPVDMFPHTTHVECVAWLKL 457
>gi|418615376|ref|ZP_13178320.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU118]
gi|374817339|gb|EHR81523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU118]
Length = 456
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L + + IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVIYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QLT--GKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDEIFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|384049105|ref|YP_005497122.1| TrmA family RNA methyltransferase [Bacillus megaterium WSH-002]
gi|345446796|gb|AEN91813.1| RNA methyltransferase, TrmA family [Bacillus megaterium WSH-002]
Length = 457
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 129/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +G + L+G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 246 VQNVNSKRTNVILGNQTSVLWGEEYIYDYIGDVKFAISAKSFYQVNPEQTKVLYDKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I NA F
Sbjct: 306 ADL--TGEETVIDAYCGIGTISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNGIHNAEFA 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + ++ K D+++ DP R G L+ ++ +K ++VYVSC PAT ARDL
Sbjct: 364 VGEAEVVIPNWYKQGIKADVIVVDPPRKGCDEALLNTIIDMKPKKVVYVSCGPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L KG Y+ +QPVDMFPHT H+E V +L+L
Sbjct: 424 AILE--------KGGYETVEVQPVDMFPHTTHVENVAVLKLK 457
>gi|421894211|ref|ZP_16324702.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
pentosaceus IE-3]
gi|385273039|emb|CCG90074.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pediococcus
pentosaceus IE-3]
Length = 455
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 128/220 (58%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G+E+ L G+S I + L GL F ISA+SF+Q N Q E LY+L D
Sbjct: 243 IQNINYKQTNVIMGDEDRVLAGESVIHDELLGLDFIISAHSFYQVNPIQTEKLYQLAIDK 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E V+D++ G GTI L +A+ K VYG E+V +A+ DA NA NN SN FV
Sbjct: 303 AGLT--GEETVIDVYSGIGTISLAMAKAAKKVYGVEIVKEAVQDAKINAFQNNASNTEFV 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD+V+ DP R G+ +I + +K R+VYVSCNPAT RD+
Sbjct: 361 VGKAEEQMQKWQEDGLKPDVVVVDPPRKGLDQSVIDATVGMKPKRVVYVSCNPATLVRDI 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
D G+Q G + + PVD FP TPH+E V +LE
Sbjct: 421 DRF----GEQ---GYVVNQPIVPVDQFPQTPHVESVTVLE 453
>gi|242241735|ref|ZP_04796180.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
W23144]
gi|242234825|gb|EES37136.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
W23144]
Length = 472
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L + + IS SF+Q N+ Q E LY+ + A
Sbjct: 260 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVIYHISDLSFYQINSSQTEKLYQQALNYA 319
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 320 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 377
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G + LLKL RI+Y+SCNP+T RD
Sbjct: 378 GKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIIYISCNPSTQQRDAQ 437
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 438 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 466
>gi|257792631|ref|YP_003183237.1| TrmA family RNA methyltransferase [Eggerthella lenta DSM 2243]
gi|257476528|gb|ACV56848.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243]
Length = 438
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 125/221 (56%), Gaps = 11/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N +GE E TLYG I + L GL+F+IS+ SF+Q N Q EVLY+ D
Sbjct: 217 VQNVNERQTNVILGEREQTLYGPGFILDKLCGLSFRISSQSFYQVNAVQTEVLYERAIDL 276
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQAISDACRNAKLNNISNATF 119
AG GSE +D +CGTGTIGL A R + V G + V A+ DA NAK N + NA F
Sbjct: 277 AGF--TGSETAIDAYCGTGTIGLVAAKRGARQVIGVDTVASAVRDARENAKHNGVENARF 334
Query: 120 VQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD + A D+++ DP R G + + + L RIVY+SCNP T RD
Sbjct: 335 AVGDAGAFMRERAAAGDAVDVLLMDPPRAGSSEEFLAAAVTLAPRRIVYISCNPTTQVRD 394
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +L +G Y ++++QPVDMFPHT HIE + L+E
Sbjct: 395 LAFLRQ-------RG-YAVRTVQPVDMFPHTDHIETIALVE 427
>gi|253578497|ref|ZP_04855769.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850815|gb|EES78773.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 386
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 124/218 (56%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVN + +GE + +YGK I +TL G TF+IS SF+Q N Q E+LYK + AG
Sbjct: 174 NVNDKKTSMVLGERDIVIYGKGYIRDTLCGCTFRISPQSFYQVNPVQTEILYKTAIEYAG 233
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L E V+D +CG GTIGL A+ K+V G E+ P A+ DA NAK N I+NA F QG
Sbjct: 234 L--GRKETVIDAYCGIGTIGLVAAKRAKNVIGVELNPDAVRDARINAKENKITNARFYQG 291
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
D + + D+V DP R G K + ++KL RIVY+SC P T ARDL+Y
Sbjct: 292 DAGEFMENMAENGEHADVVFMDPPRTGSDKKFMSSVIKLNPSRIVYISCGPETLARDLEY 351
Query: 183 LC-HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L HG Y ++ +QPVDMF T H E +CLL
Sbjct: 352 LTKHG---------YDVRKIQPVDMFSFTDHCENICLL 380
>gi|57867361|ref|YP_189004.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
gi|418605873|ref|ZP_13169176.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU041]
gi|418630312|ref|ZP_13192796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU127]
gi|420166212|ref|ZP_14672899.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM088]
gi|420182002|ref|ZP_14688145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM049]
gi|420221204|ref|ZP_14726156.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH04008]
gi|420233294|ref|ZP_14737910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH051668]
gi|81674004|sp|Q5HN37.1|Y1435_STAEQ RecName: Full=Uncharacterized RNA methyltransferase SERP1435
gi|57638019|gb|AAW54807.1| RNA methyltransferase, TrmA family [Staphylococcus epidermidis
RP62A]
gi|374401106|gb|EHQ72194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU041]
gi|374831543|gb|EHR95282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU127]
gi|394233857|gb|EJD79447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM088]
gi|394250675|gb|EJD95854.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM049]
gi|394285023|gb|EJE29112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH04008]
gi|394300351|gb|EJE43857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH051668]
Length = 456
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L +T+ IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KP +V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|422327994|ref|ZP_16409021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 6_1_45]
gi|371661777|gb|EHO26995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Erysipelotrichaceae
bacterium 6_1_45]
Length = 452
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 129/220 (58%), Gaps = 11/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT + +G+EE LYG I + L G+TF+ISA SF+Q N Q EVLY+
Sbjct: 240 VQNVNTRKTSVVLGDEERVLYGPGYIEDVLCGMTFRISAKSFYQINHEQTEVLYQ--RSV 297
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L G E VLD +CG GTIG+ ++R+VK V G E+ A+ DA NAK+N ISN FV
Sbjct: 298 ELLELSGKETVLDAYCGIGTIGMYVSRFVKQVIGVEINRDAVEDAKINAKINQISNIRFV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
D + + D+VI DP R G + IK L+++K +++Y+SCNP T RDL
Sbjct: 358 CEDAGRYMTRLAAEKKRLDVVIMDPPRSGSSEEFIKSLVRMKPKQVLYISCNPQTQIRDL 417
Query: 181 DYLCHGVGDQNIKGCYKLK-SLQPVDMFPHTPHIECVCLL 219
+ +G Y+++ L PVDMFPHT H+E VCLL
Sbjct: 418 Q-MFERMG-------YRVQGKLVPVDMFPHTVHVETVCLL 449
>gi|440781312|ref|ZP_20959654.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
pasteurianum DSM 525]
gi|440220917|gb|ELP60123.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
pasteurianum DSM 525]
Length = 499
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 123/202 (60%), Gaps = 10/202 (4%)
Query: 19 TLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGT 78
TL+GK I +++ F IS SFFQ N Q E+LY + A L+ G EIV D++CGT
Sbjct: 304 TLWGKDTIVDSIGEFKFNISPLSFFQVNPVQTEILYNKALEYADLK--GDEIVFDVYCGT 361
Query: 79 GTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKP 138
GTI L L++ K VYG E++PQAI +A NAK NNI N F+ G+ K+ + N K
Sbjct: 362 GTISLFLSQKAKKVYGVEIIPQAIENAKINAKQNNIYNVEFIVGESEKVIPEIINTGVKA 421
Query: 139 DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKL 198
D+V+ DP R G L++ + K+K RIVYVSC+P T ARDL L G+G YK
Sbjct: 422 DVVVVDPPRKGCERSLLEAIAKMKPERIVYVSCDPGTLARDLGIL-DGLG-------YKT 473
Query: 199 KSLQPVDMFPHTPHIECVCLLE 220
+QPVDMFP T H+EC LL+
Sbjct: 474 IEVQPVDMFPMTGHVECCVLLK 495
>gi|301060814|ref|ZP_07201628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [delta proteobacterium
NaphS2]
gi|300445063|gb|EFK09014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [delta proteobacterium
NaphS2]
Length = 466
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 130/219 (59%), Gaps = 14/219 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NN+N + +VGE+E L G I + + +F++SANSFFQTNT A LY+ +
Sbjct: 257 VNNINGRKASIAVGEKEKVLTGDGFINDKIGPFSFRVSANSFFQTNTSAALKLYEQVLRY 316
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A + G E VLDL+ GTGTI + L+ V+ V G E+ A +DA RNA +NN+ N FV
Sbjct: 317 ADPK--GKEQVLDLYSGTGTIPIFLSDRVRSVTGIEISESATADAKRNALVNNVHNCRFV 374
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + G G KPDI+I DP R GMH ++ + + RIVYVSCNPAT ARDL
Sbjct: 375 CGDIREKLGTVGF---KPDIMIIDPPRAGMHKDVLAETMGINPRRIVYVSCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ + Y+L +QPVDMFPHT HIE V L
Sbjct: 432 EIMAE---------AYELNEIQPVDMFPHTYHIESVAKL 461
>gi|170754817|ref|YP_001783005.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B1 str. Okra]
gi|169120029|gb|ACA43865.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B1 str. Okra]
Length = 461
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 129/220 (58%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N +GE+ TL+GK IT+ + F IS SFFQ N Q EVLYK +
Sbjct: 248 IQNINTKKTNVILGEKCITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G EIV D +CGTGTI L L++ K VYG E++ +AI +A NAK N I NA F
Sbjct: 308 ANLK--GEEIVFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFF 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ D + K D+V+ DP R G L++ + K RIVYVSC+P T ARDL
Sbjct: 366 VGKSEEVIPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G+G Y+ K +Q VDMFP T H+E + L++
Sbjct: 426 GIL-NGLG-------YETKEVQTVDMFPQTSHVETIVLIQ 457
>gi|418625394|ref|ZP_13188045.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU125]
gi|374825214|gb|EHR89158.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU125]
Length = 456
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L +T+ IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KP +V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|365902578|ref|ZP_09440401.1| RNA methyltransferase, TrmA family protein [Lactobacillus
malefermentans KCTC 3548]
Length = 455
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 128/221 (57%), Gaps = 11/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N +G++ L+GK I++ L GLTF IS SF+Q N Q E LYKL +
Sbjct: 243 VQNINQAKTNVIMGKKNKVLFGKETISDKLLGLTFAISPTSFYQVNPVQTEKLYKLAIEQ 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
GL G E V+D +CG GTI L +A K VYG E+V AI DA NA+ N+++N F
Sbjct: 303 VGL--SGKETVIDAYCGIGTISLAMAEHAKQVYGVEIVADAIEDAKVNAQKNHLNNIQFE 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ A KPD+++ DP R G+ LI+ K++ ++VYVSCNPAT RD+
Sbjct: 361 VGKAEDKMAEWQQAGLKPDVIVVDPPRKGLAASLIESATKMQPKKVVYVSCNPATLVRDV 420
Query: 181 DYLCHGVGDQNIKGCYKL-KSLQPVDMFPHTPHIECVCLLE 220
DQ YK+ + +QPVD FP T H+E V +LE
Sbjct: 421 QLFA----DQG----YKVNQPIQPVDQFPQTTHVESVTVLE 453
>gi|417659932|ref|ZP_12309526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU045]
gi|329734762|gb|EGG71068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU045]
Length = 456
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 121/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
+N+N S N +G + TLYGK I + L +T+ IS SF+Q N+ Q E LY+ + A
Sbjct: 244 HNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KP +V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|315613133|ref|ZP_07888043.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
ATCC 49296]
gi|315314695|gb|EFU62737.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
ATCC 49296]
Length = 452
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 133/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMFGNDFQIAGPAFYQVNTQMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR+D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA LNNI+NA +V
Sbjct: 300 AELRED--DVVIDAYSGIGTIGLSVAKHVKEVYGVEMIPEAVENSQKNAALNNITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QP+D+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPMDLFPQTHHVECVSLL 448
>gi|408675586|ref|YP_006875334.1| RNA methyltransferase, TrmA family [Emticicia oligotrophica DSM
17448]
gi|387857210|gb|AFK05307.1| RNA methyltransferase, TrmA family [Emticicia oligotrophica DSM
17448]
Length = 468
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 126/220 (57%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T E T YGK I E + LTF+I SF+QTN+ QA LYK+ D AGL
Sbjct: 260 LNQKKNDTFFDLEVKTYYGKPYIEEKMEDLTFRIGVKSFYQTNSEQAYELYKITRDLAGL 319
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G+E+V DL+ GTGTI +A+ K V G E V A+ DA N+ +N + N F GD
Sbjct: 320 --TGNELVYDLYTGTGTIANFVAKKAKKVIGIEYVADAVEDAKINSGVNQLENTEFYAGD 377
Query: 124 LNK-IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K + +F KPD+VI+DP R GM +++ L++ RIVYVSCNPAT ARDL
Sbjct: 378 MRKFLTKEFIEQNGKPDVVITDPPRAGMDEPVVRTLMEAAPKRIVYVSCNPATQARDLAI 437
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y + +QPVDMFPHT H+E V L+L
Sbjct: 438 LSEK---------YHISYVQPVDMFPHTHHVENVVRLDLK 468
>gi|384264260|ref|YP_005419967.1| TrmA family RNA methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387897187|ref|YP_006327483.1| putative RNA methyltransferase [Bacillus amyloliquefaciens Y2]
gi|380497613|emb|CCG48651.1| RNA methyltransferase, TrmA family [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387171297|gb|AFJ60758.1| putative RNA methyltransferase [Bacillus amyloliquefaciens Y2]
Length = 459
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 127/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELQ--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++ +K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIIDMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y+ + +QPVDMFPHT H+ECV L L
Sbjct: 425 RVLE--------DGGYQTREVQPVDMFPHTNHVECVAQLIL 457
>gi|387793511|ref|YP_006258576.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solitalea canadensis
DSM 3403]
gi|379656344|gb|AFD09400.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solitalea canadensis
DSM 3403]
Length = 468
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 127/217 (58%), Gaps = 12/217 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN +T + T G+ +I E + G+ F+IS SF+QTN+ QA LYK+ D A
Sbjct: 260 VNQKKNDTIFDQNVVTYKGRDHIFEEMEGIKFKISPKSFYQTNSEQAYNLYKITRDFADF 319
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
+ G E+V DL+ G GTI +A+ VK V G E VP+AI DA N+++N I N F GD
Sbjct: 320 K--GDELVYDLYTGAGTIANFVAKKVKQVVGVEYVPEAIEDAKINSEINGIDNTLFYAGD 377
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + DF KP++VISDP R GMH ++ + +++ +IVYVSCNPAT ARDL
Sbjct: 378 MKDVLNADFIAQHGKPNVVISDPPRAGMHADVVARINEMEPEKIVYVSCNPATQARDLAL 437
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y++ +QPVDMFP T H+E V LL
Sbjct: 438 LNEK---------YEVVKIQPVDMFPQTIHVENVVLL 465
>gi|257884417|ref|ZP_05664070.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,501]
gi|257820255|gb|EEV47403.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,231,501]
Length = 457
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIKF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENVYYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 451
>gi|227551663|ref|ZP_03981712.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecium TX1330]
gi|257887201|ref|ZP_05666854.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,141,733]
gi|257895737|ref|ZP_05675390.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com12]
gi|293377654|ref|ZP_06623843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
PC4.1]
gi|431106120|ref|ZP_19497277.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1613]
gi|431752029|ref|ZP_19540715.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2620]
gi|431756843|ref|ZP_19545475.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3083]
gi|431762070|ref|ZP_19550632.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3548]
gi|227179226|gb|EEI60198.1| TrmA family tRNA (uracil-5-)-methyltransferase [Enterococcus
faecium TX1330]
gi|257823255|gb|EEV50187.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
1,141,733]
gi|257832302|gb|EEV58723.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus faecium
Com12]
gi|292643654|gb|EFF61775.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
PC4.1]
gi|430569652|gb|ELB08642.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1613]
gi|430614638|gb|ELB51618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E2620]
gi|430620697|gb|ELB57499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3083]
gi|430624762|gb|ELB61412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E3548]
Length = 457
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIKF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENVYYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 451
>gi|116493111|ref|YP_804846.1| tRNA (uracil-5-)-methyltransferase related enzyme [Pediococcus
pentosaceus ATCC 25745]
gi|116103261|gb|ABJ68404.1| 23S rRNA m(5)U-1939 methyltransferase [Pediococcus pentosaceus ATCC
25745]
Length = 455
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 128/220 (58%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G+E+ L G+S I + L GL F ISA+SF+Q N Q E LY+L D
Sbjct: 243 IQNINYKQTNVIMGDEDRVLAGESVIHDELLGLDFIISAHSFYQVNPIQTEKLYQLAIDK 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E V+D++ G GTI L +A+ K VYG E+V +A+ DA NA NN SN FV
Sbjct: 303 AGLT--GEETVIDVYSGIGTISLAMAKAAKKVYGVEIVKEAVQDAKINAFQNNASNTEFV 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD+V+ DP R G+ +I + +K R+VYVSCNPAT RD+
Sbjct: 361 VGKAEEQMQKWQEDGLKPDVVVVDPPRKGLDQSVIDATVGMKPKRVVYVSCNPATLVRDI 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
D G+Q G + + PVD FP TPH+E V +LE
Sbjct: 421 DRF----GEQ---GYVVNQPIVPVDQFPQTPHVESVTVLE 453
>gi|406837752|ref|ZP_11097346.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus vini DSM 20605]
Length = 457
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 123/219 (56%), Gaps = 9/219 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N + N +G+ E L GK IT+ L G+ F IS SFFQ N+ Q E +Y+ + A
Sbjct: 244 QNINPARTNVILGKTEKLLAGKEQITDQLNGINFAISPQSFFQVNSLQTEKIYQFAIEAA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G E V+D +CG GTI L LA K V G E+VP+AI+DA +NA LN I N F
Sbjct: 304 HL--TGQETVIDAYCGIGTISLNLALQAKRVLGVEIVPEAIADAKKNAALNRIKNVEFQV 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KPD+V+ DP R G+ +++ L+L RIVYVSCNPAT RDL
Sbjct: 362 GSAVEWMKKWADQDLKPDVVVFDPPRKGLDSEVLASALQLAPKRIVYVSCNPATLVRDLR 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+L G + +QP D FP T H+E V +LE
Sbjct: 422 FLAD-------HGYAVAQPIQPFDQFPQTNHVESVTVLE 453
>gi|282874553|ref|ZP_06283438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis SK135]
gi|417657298|ref|ZP_12306964.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU028]
gi|417908257|ref|ZP_12552016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU037]
gi|417912826|ref|ZP_12556508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU109]
gi|418613412|ref|ZP_13176422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU117]
gi|418617513|ref|ZP_13180408.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU120]
gi|418663942|ref|ZP_13225443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU081]
gi|419768897|ref|ZP_14295000.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-250]
gi|419770608|ref|ZP_14296679.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-K]
gi|420171196|ref|ZP_14677743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM070]
gi|420173310|ref|ZP_14679804.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM067]
gi|420195657|ref|ZP_14701446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM021]
gi|420198198|ref|ZP_14703914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM020]
gi|420202526|ref|ZP_14708117.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM018]
gi|420208101|ref|ZP_14713581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM008]
gi|420209731|ref|ZP_14715166.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM003]
gi|420212312|ref|ZP_14717664.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM001]
gi|420215032|ref|ZP_14720305.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH05005]
gi|420215902|ref|ZP_14721128.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH05001]
gi|420223534|ref|ZP_14728430.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH08001]
gi|420226092|ref|ZP_14730915.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH06004]
gi|420228504|ref|ZP_14733255.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH05003]
gi|420230845|ref|ZP_14735523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH04003]
gi|420235880|ref|ZP_14740412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH051475]
gi|421608738|ref|ZP_16049952.1| RNA methyltransferase [Staphylococcus epidermidis AU12-03]
gi|281296692|gb|EFA89201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis SK135]
gi|329734822|gb|EGG71127.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU028]
gi|341656478|gb|EGS80195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU037]
gi|341657045|gb|EGS80742.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU109]
gi|374411019|gb|EHQ81744.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU081]
gi|374815694|gb|EHR79917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU117]
gi|374818418|gb|EHR82580.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU120]
gi|383358801|gb|EID36247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-250]
gi|383363221|gb|EID40560.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-K]
gi|394238379|gb|EJD83848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM070]
gi|394240241|gb|EJD85668.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM067]
gi|394263033|gb|EJE07779.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM021]
gi|394264717|gb|EJE09389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM020]
gi|394269276|gb|EJE13811.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM018]
gi|394274722|gb|EJE19132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM008]
gi|394277733|gb|EJE22052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM003]
gi|394279943|gb|EJE24237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM001]
gi|394282662|gb|EJE26849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH05005]
gi|394287258|gb|EJE31222.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH08001]
gi|394292808|gb|EJE36545.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH06004]
gi|394293013|gb|EJE36743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH05001]
gi|394294767|gb|EJE38432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH05003]
gi|394295979|gb|EJE39612.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH04003]
gi|394301864|gb|EJE45317.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH051475]
gi|406655628|gb|EKC82053.1| RNA methyltransferase [Staphylococcus epidermidis AU12-03]
Length = 456
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L +T+ IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KP +V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|347752051|ref|YP_004859616.1| TrmA family RNA methyltransferase [Bacillus coagulans 36D1]
gi|347584569|gb|AEP00836.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
Length = 457
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 129/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++N+N N +GE+ L+G I + + + F ISA SF+Q N Q +VLY+ +
Sbjct: 245 VHNINPKRTNVILGEKTKVLWGNEVIYDKIGDIKFAISAPSFYQVNPVQTKVLYEKALEY 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L GSE V+D +CG GTI L LA+ + V+G E+VP+AI DA RNA LN I+N F
Sbjct: 305 AEL--TGSETVIDAYCGIGTISLFLAQKARKVFGVEIVPEAIEDAKRNAALNGITNVEFE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + A K D+++ DP R G L+K +L++K ++VYVSCNPAT ARDL
Sbjct: 363 AGTAETVIPKWYEAGNKADVLVVDPPRKGCDEALLKTILEMKPQKVVYVSCNPATLARDL 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+L G Y+ +QPVDMFPHT H+E V L
Sbjct: 423 RFLE--------TGGYRTVEVQPVDMFPHTTHVEVVTKL 453
>gi|401683584|ref|ZP_10815470.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
BS35b]
gi|400187662|gb|EJO21856.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
BS35b]
Length = 452
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDRNTNAIFGKEWKTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR+D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +N LNNI+NA +V
Sbjct: 300 AELRED--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNVALNNITNARYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ I+ + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPSVILVDPPRKGLTESFIEASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLL 448
>gi|325280541|ref|YP_004253083.1| RNA methyltransferase, TrmA family [Odoribacter splanchnicus DSM
20712]
gi|324312350|gb|ADY32903.1| RNA methyltransferase, TrmA family [Odoribacter splanchnicus DSM
20712]
Length = 477
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 129/220 (58%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M +N + + ++ + +G+ +I E + GL F+I SF+QTN+ QA LY +
Sbjct: 256 MYVINEKLNDNLTDQDMFCFHGRDHIFEEMEGLKFKIGPKSFYQTNSEQAYNLYSKTREL 315
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E V DL+ GTGTI +AR + V G E VP+AI DA N+ +N+I N F
Sbjct: 316 AGL--TGQETVYDLYTGTGTIANFIARQARKVIGIEYVPEAIEDAKVNSAINHIDNTIFY 373
Query: 121 QGDLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD+ + F + +PDI+I+DP R GMH +++ +L+ RIVYVSCN AT ARD
Sbjct: 374 AGDMKDVLNASFISKHGQPDIIITDPPRAGMHPDVVQTILQASPERIVYVSCNSATQARD 433
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Q + Y++ ++QPVDMFPHT H+E + LL
Sbjct: 434 L---------QMMDSAYEVIAVQPVDMFPHTHHVENIVLL 464
>gi|387819647|ref|YP_005679994.1| TrmA family RNA methyltransferase [Clostridium botulinum H04402
065]
gi|322807691|emb|CBZ05266.1| RNA methyltransferase, TrmA family [Clostridium botulinum H04402
065]
Length = 467
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 127/220 (57%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N +GE+ TL+GK IT+ + F IS SFFQ N Q EVLYK +
Sbjct: 248 IQNINTKKTNVILGEKCITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G EIV D +CGTGTI L L++ K VY E++ +AI +A NAK N I NA F
Sbjct: 308 ANLK--GEEIVFDAYCGTGTISLFLSQKAKKVYAVEIIKEAIDNAKDNAKENKIDNAEFF 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ D + K D+V+ DP R G L++ + K RI YVSC+P T ARDL
Sbjct: 366 VGKSEEVIPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIAYVSCDPGTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L + +G Y+ K +QPVDMFP T H+ECV +E
Sbjct: 426 GIL-NELG-------YETKKVQPVDMFPQTSHVECVVRIE 457
>gi|336115310|ref|YP_004570077.1| TrmA family RNA methyltransferase [Bacillus coagulans 2-6]
gi|335368740|gb|AEH54691.1| RNA methyltransferase, TrmA family [Bacillus coagulans 2-6]
Length = 457
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 129/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++N+N N +GE+ L+G I + + + F ISA SF+Q N Q +VLY+ +
Sbjct: 245 VHNINPKRTNVILGEKTKVLWGNEVIYDKIGDIKFAISAPSFYQVNPVQTKVLYEKALEY 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L GSE V+D +CG GTI L LA+ + V+G E+VP+AI DA RNA LN I+N F
Sbjct: 305 AEL--TGSETVIDAYCGIGTISLFLAQKARKVFGVEIVPEAIEDAKRNAALNGITNVEFE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + A K D+++ DP R G L+K +L++K ++VYVSCNPAT ARDL
Sbjct: 363 AGTAETVIPKWYEAGNKADVLVVDPPRKGCDEALLKTILEMKPQKVVYVSCNPATLARDL 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+L G Y+ +QPVDMFPHT H+E V L
Sbjct: 423 RFLE--------TGGYRTVEVQPVDMFPHTTHVEVVTKL 453
>gi|422826606|ref|ZP_16874785.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK678]
gi|324994724|gb|EGC26637.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK678]
Length = 464
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G++ TLYG++ IT+ + G FQI+A +F+Q NT AE LY+ D
Sbjct: 253 MQNINDQPGNAIFGKDWRTLYGQNYITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTAIDF 312
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA +N I+NA++V
Sbjct: 313 SELTAD--DVVLDAYSGIGTIGLSVAKHVKQVYGVEVIPEAVENSRKNAAINGITNASYV 370
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ ++ + D+++ DP R G+ IK + ++ +I Y+SCN AT ARD+
Sbjct: 371 CASAEEAIQNWLKEGIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDI 430
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 431 K-LYQELG-------YELKKVQPVDLFPQTHHVECVALL 461
>gi|294674202|ref|YP_003574818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella ruminicola
23]
gi|294473371|gb|ADE82760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella ruminicola
23]
Length = 483
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 131/213 (61%), Gaps = 13/213 (6%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N ++G++E ++ G +I E + L F++ SF+QTNT QA LY + + AGL G+
Sbjct: 280 NDTIGDQEILVFKGIDHIYELMEDLKFKVGPKSFYQTNTEQAYHLYSVARNFAGL--TGN 337
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI- 127
E+V DL+ GTGTI +A+ + V G E VP+AI DA N+++N I N F GD+ I
Sbjct: 338 ELVYDLYTGTGTIANFVAKKARKVIGIEYVPEAIEDAKINSEVNKIGNTLFYAGDMKDIL 397
Query: 128 GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 187
+F PD++I+DP R GMH ++K +L RIVYVSCNPAT ARDL
Sbjct: 398 TEEFIAEHGHPDVIITDPPRAGMHPDVVKTILGAAPKRIVYVSCNPATQARDL------- 450
Query: 188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
++ Y++ ++QPVDMFPHTPH+E V LLE
Sbjct: 451 --HDLDVDYRVAAVQPVDMFPHTPHVENVVLLE 481
>gi|443633743|ref|ZP_21117920.1| putative RNA methyltransferase [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443346537|gb|ELS60597.1| putative RNA methyltransferase [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 460
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 128/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELQ--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++++K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y + +QPVDMFPHT H+EC LL L+
Sbjct: 425 RVLE--------DGGYATREVQPVDMFPHTNHVECCALLVLN 458
>gi|402298016|ref|ZP_10817747.1| RNA methyltransferase [Bacillus alcalophilus ATCC 27647]
gi|401726787|gb|EJS99999.1| RNA methyltransferase [Bacillus alcalophilus ATCC 27647]
Length = 461
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 129/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E L+G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 246 VQNINPKRTNVIFGDETKVLWGEEYIHDYIGDIRFAISARSFYQVNPAQTKVLYDKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A ++ G E V+D +CG GTI L LA+ K V G E+VP+AISDA +NA++N N F
Sbjct: 306 ADIK--GHETVIDAYCGIGTISLFLAQKAKRVLGVEIVPEAISDAKQNARINGFDNVDFA 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ K+ + +PD+++ DP R G KL++ +L +K R+VYVSCNPAT ARDL
Sbjct: 364 VGEAEKVIPWWYAQGVRPDVIVVDPPRKGCDDKLLETILAMKPERVVYVSCNPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G YK K +QPVDMFP + H+E + L L
Sbjct: 424 KVLE--------EGGYKTKEVQPVDMFPQSTHVEVIVKLVLK 457
>gi|366086326|ref|ZP_09452811.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus zeae KCTC 3804]
Length = 456
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 122/219 (55%), Gaps = 10/219 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N N +G + T+YG+ + + L G FQIS SF+Q N Q EVLY + AG
Sbjct: 247 NLNDKRTNVILGRKSKTIYGQDYLLDKLLGSEFQISPVSFYQVNPVQTEVLYTQAIEAAG 306
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V+D + G GTI LT+AR KHVYG EVV A+ DA NA N+I N TF G
Sbjct: 307 L--TGKETVIDAYSGIGTISLTMARHAKHVYGVEVVESAVRDAQANAARNHIKNVTFEVG 364
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + +A D+++ DP R G+ I + +K P+IVYVSCNPAT ARDL
Sbjct: 365 KAEDVIQKWKDADLPVDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNPATLARDLQL 424
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G G Y K QPVDMFP T HIE + L L
Sbjct: 425 LA-GFG-------YTAKQTQPVDMFPQTQHIESITALTL 455
>gi|423070573|ref|ZP_17059349.1| hypothetical protein HMPREF9177_00666 [Streptococcus intermedius
F0413]
gi|355365659|gb|EHG13381.1| hypothetical protein HMPREF9177_00666 [Streptococcus intermedius
F0413]
Length = 451
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 134/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N NT G++ TL+G+ IT+ + FQI+A +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNTIFGKDWRTLHGRDYITDRMLNNDFQIAAPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA++N I+N +V
Sbjct: 300 SELAAD--DVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSQKNAEINGITNTHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ KPD+++ DP R G+ I+ + ++ +I+Y+SCNPAT RD+
Sbjct: 358 CDSAENAMANWSKQDIKPDVILVDPPRKGLTESFIESSVSMEPKKIIYISCNPATMTRDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVALL 448
>gi|332686169|ref|YP_004455943.1| TrmA family RNA methyltransferase [Melissococcus plutonius ATCC
35311]
gi|332370178|dbj|BAK21134.1| RNA methyltransferase, TrmA family [Melissococcus plutonius ATCC
35311]
Length = 460
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 126/220 (57%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +GEE LYG I + L G + ISA SF+Q NT Q E LYK +
Sbjct: 244 IQNINPDKTNVIMGEESILLYGNPYINDQLLGKNYHISAASFYQVNTEQTEYLYKTAIEF 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL ++ V+D +CG GTI L+LA VKHVYG E++ AI DA NA +N I N TF
Sbjct: 304 AGL--SPTDQVVDAYCGIGTIALSLAEQVKHVYGVEIIEAAILDARENAAINQIENCTFN 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ D+ A P+I+ DP R G+ I+ ++ RI+Y+SCNPAT ARDL
Sbjct: 362 IGKAEEVMIDWQKAGISPNIIFVDPPRKGLTESFIETCTEMDPNRIIYISCNPATLARDL 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+G Y+ + +QPVD+FP T H+E V LL+
Sbjct: 422 KLFAE-LG-------YETRKIQPVDLFPQTYHVETVALLQ 453
>gi|291542511|emb|CBL15621.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus bromii
L2-63]
Length = 454
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 126/218 (57%), Gaps = 10/218 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N N +G + T+YG +IT+TL GL F+IS SF+Q N QAE LY ++ A
Sbjct: 245 NSNREKTNVVLGRKNRTIYGSDHITDTLCGLQFKISPFSFWQINRKQAEKLYGKAKEYAN 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ D EI+LDL+CGTGTIGLT+A K + G E+V A+ DA NAK N I NA F+ G
Sbjct: 305 LKSD--EILLDLYCGTGTIGLTMADSCKQLIGAEIVEDAVKDANENAKANGIENARFICG 362
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
D + KPD VI DP R G +L+K + ++ R+VYVSC+PAT ARDL +
Sbjct: 363 DASAAAFQLEKEGLKPDCVILDPPRKGCGEELVKTISRMLPSRVVYVSCDPATLARDLKF 422
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ Y K + P DMF T H+E V L+E
Sbjct: 423 F--------TENGYTPKEITPCDMFSGTSHVESVALIE 452
>gi|410726572|ref|ZP_11364809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
Maddingley MBC34-26]
gi|410600605|gb|EKQ55132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
Maddingley MBC34-26]
Length = 454
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 126/213 (59%), Gaps = 13/213 (6%)
Query: 5 NTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLR 64
N S + + E+ LYGK I E L GL F IS SFFQTNT AE LY ++++ G
Sbjct: 247 NDSRSDAVIPEKVNILYGKDYIREILLGLQFNISPFSFFQTNTKGAESLYTIVKEFMG-- 304
Query: 65 DDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL 124
D S++V DL+CGTGTIG +A K V G E++ +A+ A NAKLN + N F+ GD+
Sbjct: 305 DSDSKVVFDLYCGTGTIGQIVAPNAKKVIGIELIEEAVEAAKENAKLNGLDNCEFIAGDV 364
Query: 125 NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184
+I + KPDI+I DP R G+H K + +++K AP I+YVSCNP T DL L
Sbjct: 365 AEIIKTIKD---KPDIIILDPPRTGVHPKALDYVIKFNAPEIIYVSCNPKTLVEDLKVLT 421
Query: 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
KG YK+ + DMFP+TPH+ECV
Sbjct: 422 D-------KG-YKVVQTKVKDMFPNTPHVECVV 446
>gi|422820971|ref|ZP_16869164.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK353]
gi|324991589|gb|EGC23522.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK353]
Length = 469
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G++ TLYG+ IT+ + G FQI+A +F+Q NT AE LY+ D
Sbjct: 253 MQNINDQPGNAIFGKDWRTLYGQDYITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTALDF 312
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++V+D + G GTIGL++A++VK VYG EV+P+A+ ++ +NA++N I+NA++V
Sbjct: 313 SELTAD--DVVIDAYSGIGTIGLSVAKYVKQVYGVEVIPEAVENSRKNAEINGIANASYV 370
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ D+ + D+++ DP R G+ IK + ++ +I Y+SCN AT ARD+
Sbjct: 371 CAPAEEAIQDWLKEGIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDI 430
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 431 K-LYQELG-------YELKKVQPVDLFPQTHHVEAVSLL 461
>gi|431033011|ref|ZP_19490857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1590]
gi|430564112|gb|ELB03296.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1590]
Length = 457
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LYG+ I + L G T++ISA SF+Q NT QAE LY+
Sbjct: 245 IQNINEEKTNVILGDKEKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIKF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENVYYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 451
>gi|418610373|ref|ZP_13173488.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU065]
gi|374404699|gb|EHQ75668.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU065]
Length = 456
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L +T+ IS SF+Q N+ Q E LY+ + A
Sbjct: 244 QNINNSHSNVIMGRQSITLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYA 303
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 304 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 361
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KP +V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 362 GKAEDVILTWKSQGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 421
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 422 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 450
>gi|290968456|ref|ZP_06559995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera genomosp.
type_1 str. 28L]
gi|290781452|gb|EFD94041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera genomosp.
type_1 str. 28L]
Length = 460
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 135/221 (61%), Gaps = 14/221 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N +G + TLYG+ I + + L F ISA SFFQ N+ QA+ LY+ +
Sbjct: 248 IQNINTGHTNVILGRKTRTLYGQDTIHDAIGNLRFHISAQSFFQVNSEQAQRLYEKAMEF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G+EIV D++CGTGTI L LA+ K VYG E+VP AI DA RNA+ N+I NA F+
Sbjct: 308 ADLK--GNEIVADVYCGTGTITLFLAQKAKQVYGIEIVPSAIKDAIRNARDNHIKNAEFI 365
Query: 121 QGD-LNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD + K+ N +P +++ DP R G +++ + + + R+VYVSCNPAT ARD
Sbjct: 366 LGDAVYKLPELIKNGV-RPQVIVLDPPRAGCGEPVLRAIGRSQPERVVYVSCNPATLARD 424
Query: 180 LDYL-CHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L L +G YK + +QPVDMF T H+E V L+
Sbjct: 425 LACLQTYG---------YKTERVQPVDMFSRTHHVESVALV 456
>gi|293367789|ref|ZP_06614438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis M23864:W2(grey)]
gi|291318128|gb|EFE58525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis M23864:W2(grey)]
Length = 487
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 120/218 (55%), Gaps = 11/218 (5%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N S N +G + TLYGK I + L +T+ IS SF+Q N+ Q E LY+ + A
Sbjct: 275 QNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVTYHISDLSFYQINSSQTEKLYQQALNYA 334
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIVLD +CG GTIGL +A KHVYG EVVPQAI DA NA N + N TF
Sbjct: 335 QL--TGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFEC 392
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + + KP +V+ DP R G + LLKL RIVY+SCNP+T RD
Sbjct: 393 GKAEDVILTWKSQGIKPGVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQ 452
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+L + PVDMFP T HIE V L
Sbjct: 453 ILAEQ---------YELVEITPVDMFPQTTHIETVALF 481
>gi|224369754|ref|YP_002603918.1| protein TrmA [Desulfobacterium autotrophicum HRM2]
gi|223692471|gb|ACN15754.1| TrmA [Desulfobacterium autotrophicum HRM2]
Length = 462
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 129/224 (57%), Gaps = 22/224 (9%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+NNV + G+ E L G+ I E L TF+ISANSFFQTNT AE LY L+ +
Sbjct: 255 VNNVTAKKAGIATGDYEKLLAGEQFIREKLGRFTFEISANSFFQTNTAGAEQLYSLVSEY 314
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E V+DL+ GTGTI + L+ K V G E+V A+ DA +NA LN I N F
Sbjct: 315 ADL--TGNETVVDLYSGTGTIPIWLSDRAKKVVGIEIVESAVVDAKKNAALNQIDNCEFF 372
Query: 121 QGDLNKIGGDFGNAFPKPD----IVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATC 176
GD+ + P+ D ++I DP R GMH ++ ++ + +IVYVSCNPAT
Sbjct: 373 VGDIKDV-------LPQLDATCNVMIIDPPRVGMHKDVVAQVMAIAPKKIVYVSCNPATL 425
Query: 177 ARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
ARDL L K Y++ +QPVDMFPHT HIE V LLE
Sbjct: 426 ARDLGML---------KERYRVVKVQPVDMFPHTFHIESVALLE 460
>gi|257869904|ref|ZP_05649557.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus gallinarum
EG2]
gi|257804068|gb|EEV32890.1| tRNA (uracil-5-)-methyltransferase/TrmA [Enterococcus gallinarum
EG2]
Length = 467
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 125/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G+ E LYGK++I + L TFQISA SF+Q NT Q EVLY+ +
Sbjct: 254 IQNINEEKTNVIMGDVEKVLYGKASIDDQLFDKTFQISAKSFYQVNTAQTEVLYQKAFEL 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D +IV+D + G GTIG++LA V+ V G EVV +A+ DA NA N + N +
Sbjct: 314 ADLQPD--DIVVDAYAGIGTIGISLADRVQEVLGMEVVAEAVEDAKANAARNGLENVHYF 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G KI + +P +V DP R G+ I+ +K RIVY+SCNPAT ARDL
Sbjct: 372 VGKAEKIMPQWLREGIQPTVVFVDPPRKGLEASFIETTAAVKPERIVYISCNPATLARDL 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ Y K +QPVD+FP T H+ECV L+
Sbjct: 432 ALFA--------EEGYVTKQVQPVDLFPQTTHVECVVLM 462
>gi|304316338|ref|YP_003851483.1| TrmA family RNA methyltransferase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777840|gb|ADL68399.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 450
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ VN S + E+ LYG+ I + + GL F+ISA SFFQTN+ AE LY + +
Sbjct: 242 LHTVNDSYSDAVKCEKLTVLYGRDYIMDEILGLKFKISAFSFFQTNSKGAEKLYSIAREF 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AG + ++I+ DL+CGTGTIG+ +A K V G E+V +A+ A NA+LN +SN F+
Sbjct: 302 AG--EISNKILFDLYCGTGTIGIIMAPLAKKVIGVELVEEAVDAARENARLNGLSNIQFI 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD + KPD+V+ DP RPG++ K I ++KL +I+YVSCNP + RDL
Sbjct: 360 AGD---VAQKIKEINEKPDVVVLDPPRPGVNPKAILDIIKLNPEKIIYVSCNPVSLTRDL 416
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ YK++ ++ VDMFPHTPH+ECV L+
Sbjct: 417 KMFN--------ERQYKVEKVKCVDMFPHTPHVECVTLM 447
>gi|400927266|ref|YP_001086872.2| tRNA (Uracil-5-)-methyltransferase [Clostridium difficile 630]
gi|328887534|emb|CAJ67227.2| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
630]
Length = 453
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 90/221 (40%), Positives = 133/221 (60%), Gaps = 15/221 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N + + +E LYG+ I E + GL F+IS SFFQTNT AEVLY + D
Sbjct: 243 LHTINDGLADAVQCDELRVLYGRDYIQEEILGLKFKISPFSFFQTNTKGAEVLYSIARDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D ++V DL+ GTG+IG +A K VYG E+V +A+ A NAKLN ++N F+
Sbjct: 303 IG--DYNDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFI 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ D + KPD++I DP RPG+H I+ + A IVY+SCNP + DL
Sbjct: 361 AGDVAKVVKDLKD---KPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDL 417
Query: 181 -DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
D+ +G Y++K ++ +DMFP+TPH+EC+ L++
Sbjct: 418 VDFKGYG---------YEIKMVKCMDMFPNTPHVECIALIQ 449
>gi|422854537|ref|ZP_16901201.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK160]
gi|325696032|gb|EGD37923.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK160]
Length = 465
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 137/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G++ TLYG+ IT+ + G FQI+A +F+Q NT AE LY+ D
Sbjct: 253 MQNINDQPGNAIFGKDWRTLYGQDYITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTAIDF 312
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA++N+I+NA++V
Sbjct: 313 SELTAD--DVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSRKNAEINDITNASYV 370
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ ++ + D+++ DP R G+ IK + ++ +I Y+SCN AT +RD+
Sbjct: 371 CAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIKASISMEPKKITYISCNVATMSRDI 430
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 431 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLL 461
>gi|422823303|ref|ZP_16871491.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK405]
gi|422855238|ref|ZP_16901896.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1]
gi|422865215|ref|ZP_16911840.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1058]
gi|324993953|gb|EGC25872.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK405]
gi|327463215|gb|EGF09536.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1]
gi|327489947|gb|EGF21736.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1058]
Length = 465
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G++ TLYG++ IT+ + G FQI+A +F+Q NT AE LY+ D
Sbjct: 253 MQNINDQPGNAIFGKDWRTLYGQNYITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTAIDF 312
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA +N I+NA++V
Sbjct: 313 SELTAD--DVVLDAYSGIGTIGLSVAKHVKQVYGVEVIPEAVENSRKNAAINGITNASYV 370
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ ++ + D+++ DP R G+ IK + ++ +I Y+SCN AT ARD+
Sbjct: 371 CASAEEAIQNWLKEGIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDI 430
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 431 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLL 461
>gi|357051090|ref|ZP_09112286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus
saccharolyticus 30_1]
gi|355380715|gb|EHG27851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus
saccharolyticus 30_1]
Length = 457
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 125/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G+ E LYGK++I + L TFQISA SF+Q NT Q EVLY+ +
Sbjct: 244 IQNINEEKTNVIMGDVEKVLYGKASIDDQLFDKTFQISAKSFYQVNTAQTEVLYQKAFEL 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D +IV+D + G GTIG++LA V+ V G EVV +A+ DA NA N + N +
Sbjct: 304 ADLQPD--DIVVDAYAGIGTIGISLADRVQEVLGMEVVAEAVEDAKANAARNGLENVHYF 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G KI + +P +V DP R G+ I+ +K RIVY+SCNPAT ARDL
Sbjct: 362 VGKAEKIMPQWLREGIQPTVVFVDPPRKGLEASFIETTAAVKPERIVYISCNPATLARDL 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ Y K +QPVD+FP T H+ECV L+
Sbjct: 422 ALFA--------EEGYVTKQVQPVDLFPQTTHVECVVLM 452
>gi|423721306|ref|ZP_17695488.1| 23S rRNA (uracil-5-)-methyltransferase RumA, trmA family
[Geobacillus thermoglucosidans TNO-09.020]
gi|383365677|gb|EID42970.1| 23S rRNA (uracil-5-)-methyltransferase RumA, trmA family
[Geobacillus thermoglucosidans TNO-09.020]
Length = 457
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 125/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G+E L+G I + + + F ISA SF+Q N Q +VLY+ +
Sbjct: 246 IQNINPKKTNVIMGDETKVLWGAEYIYDYIGDIQFAISARSFYQVNPAQTKVLYEKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ K V+G EVVP+AI DA RNA LN I+N F
Sbjct: 306 AQL--TGEETVIDAYCGIGTISLFLAKKAKKVFGVEVVPEAIEDAKRNAALNRITNVEFA 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + + D ++ DP R G L++ ++ +K R+VYVSCNPAT ARDL
Sbjct: 364 VGEAEAVIPKWYKQGIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y+ +QPVDMFPHT H+EC LL
Sbjct: 424 RILED--------GGYQTLEVQPVDMFPHTAHVECCALL 454
>gi|319938868|ref|ZP_08013232.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus
anginosus 1_2_62CV]
gi|319811918|gb|EFW08184.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Streptococcus
anginosus 1_2_62CV]
Length = 453
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 134/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN +G+E + LYG+ IT+ + FQI+A +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQPGNAILGKEFHVLYGQDYITDRMLDNDFQIAAPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L + +IV+D + G GTIGL++A+ VK VYG EV+PQA+ ++ +NA+LN ISNA +V
Sbjct: 300 AELSIE--DIVVDAYSGIGTIGLSVAKHVKEVYGVEVIPQAVENSKKNAELNGISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ N KP +++ DP R G+ IK + + +IVY+SCN AT ARD+
Sbjct: 358 CDSAENAIKKWLNQGIKPSVIMVDPPRKGLTESFIKSSVSMNPKKIVYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G YKL +QPVD+FP T H+EC+ L++
Sbjct: 418 K-LYQELG-------YKLTKVQPVDLFPMTHHVECIALIQ 449
>gi|222151872|ref|YP_002561032.1| RNA methyltransferase, TrmA family protein [Macrococcus
caseolyticus JCSC5402]
gi|222121001|dbj|BAH18336.1| RNA methyltransferase, TrmA family protein homolog [Macrococcus
caseolyticus JCSC5402]
Length = 454
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 122/217 (56%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N GN +G L+G T+ + GL F++S NSFFQ NT QAE LYKL + A
Sbjct: 246 NFNNQEGNVILGRNNTVLHGTPYYTDKILGLEFRVSPNSFFQVNTPQAETLYKLALEAAN 305
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G E VLD +CG GTI L LA+ + VY E+V ++I A +NAK+N I N F G
Sbjct: 306 LK--GHETVLDAYCGIGTISLALAQHAEQVYAMEIVHESIKMAKQNAKMNGIDNVHFETG 363
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++I + D+ + DP R G+ I+ L+ IVYVSCNP TCARD
Sbjct: 364 SADEILPKWSEQGVNFDVAVVDPPRKGLDDDFIQTLINQSPKTIVYVSCNPGTCARD--- 420
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
C D YKL+ ++PVD+FP TPH+ECV L
Sbjct: 421 -CRKFAD----AGYKLEYVKPVDLFPQTPHVECVVKL 452
>gi|160933694|ref|ZP_02081082.1| hypothetical protein CLOLEP_02555 [Clostridium leptum DSM 753]
gi|156867571|gb|EDO60943.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium leptum DSM
753]
Length = 371
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 122/221 (55%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + +GE+E LYG I + L G FQISA SF+Q N Q E LY +
Sbjct: 151 LMNLNDRYTSMVLGEQEKVLYGPGKIQDILCGCRFQISAKSFYQINPAQTEALYLKAMEY 210
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQAISDACRNAKLNNISNATF 119
AGL GSE V+D +CG GTIGL A R K V G E+ A+ DA NAKLN +SNA F
Sbjct: 211 AGL--TGSETVIDAYCGIGTIGLVAAKRGAKKVVGVELNRDAVKDAIENAKLNKLSNAWF 268
Query: 120 VQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD + + D+V DP R G + L+ L ++VY+SCNP T RD
Sbjct: 269 CAGDAGEFMLEMSLEKEPADVVFMDPPRAGSDRTFLSSLIALSPQKVVYISCNPETQQRD 328
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YL KG Y++ +QPVDMFPHT H+E V LLE
Sbjct: 329 LRYLTS-------KGPYRVTRIQPVDMFPHTNHVETVALLE 362
>gi|425450935|ref|ZP_18830758.1| putative enzyme [Microcystis aeruginosa PCC 7941]
gi|389768010|emb|CCI06761.1| putative enzyme [Microcystis aeruginosa PCC 7941]
Length = 455
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 123/218 (56%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N GN G + T+ G+ I E GLT+Q++A++FFQ NT AE L LI C
Sbjct: 242 NYNPDRGNAIFGTQTTTIAGRDYINEKFAGLTYQLAADTFFQINTEAAEALLALI--CQK 299
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EI++D +CG GT L LA+ VK V G E ++ A NA+LNNI+N TF+ G
Sbjct: 300 LELKGEEILIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNNITNTTFILG 359
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K KPDI++ DP R G ++ LL++++ RIVY+SC AT ARDL Y
Sbjct: 360 AVEKT---LPQLTVKPDIILLDPPRKGCERSVLDSLLQMQSQRIVYISCQSATLARDLQY 416
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
LC G Y+L +Q D FP TPH+ECV L
Sbjct: 417 LCK-------TGDYQLLEVQTADFFPQTPHVECVAFLR 447
>gi|419782653|ref|ZP_14308451.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK610]
gi|383182866|gb|EIC75414.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK610]
Length = 452
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E +TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWHTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L++D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA LN I+NA +V
Sbjct: 300 AELKED--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASLNKITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKKWLKEGIQPSLILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLL 448
>gi|167039861|ref|YP_001662846.1| RNA methyltransferase [Thermoanaerobacter sp. X514]
gi|300915379|ref|ZP_07132693.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
gi|307724814|ref|YP_003904565.1| TrmA family RNA methyltransferase [Thermoanaerobacter sp. X513]
gi|166854101|gb|ABY92510.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X514]
gi|300888655|gb|EFK83803.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
gi|307581875|gb|ADN55274.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X513]
Length = 452
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 133/219 (60%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ N S + V E+ LYGK + E L GL F+ISA SFFQTN++ AE LY+ + +
Sbjct: 242 LHTQNDSWSDAVVCEKLNVLYGKDYLIEELLGLKFKISAFSFFQTNSYGAEKLYETVREF 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AG D +IV DL+ GTGTIG+ +A K V G E+V +A+ A NA+LN + N TF+
Sbjct: 302 AG--DVSDKIVFDLYSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAELNGLKNCTFI 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD++K + PD+VI DP R G++ K ++ ++K ++VYVSCNP + ARDL
Sbjct: 360 AGDVSKKLKEIKEM---PDVVIVDPPRSGINPKALEDIIKFNPQKVVYVSCNPESLARDL 416
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+G YK+ ++ VDMFPHT H+ECV L+
Sbjct: 417 KIFS--------EGGYKVDKVKCVDMFPHTYHVECVVLM 447
>gi|237709870|ref|ZP_04540351.1| RNA methyltransferase [Bacteroides sp. 9_1_42FAA]
gi|229455963|gb|EEO61684.1| RNA methyltransferase [Bacteroides sp. 9_1_42FAA]
Length = 473
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/200 (47%), Positives = 123/200 (61%), Gaps = 12/200 (6%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G +I E + GL F+I A SF+QTN+ QA LYK+ + A L G+E+V DL+ GTGTI
Sbjct: 282 GNDHIFEEMEGLRFKIGAKSFYQTNSGQAYNLYKVARNFARL--TGNELVYDLYTGTGTI 339
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI-GGDFGNAFPKPDI 140
++R K V G E VP+AI DA N+ +N I N F GD+ I +F + +PD+
Sbjct: 340 ANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGDMKDILTQEFISQHGRPDV 399
Query: 141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKS 200
+I+DP R GMH +I +L + RIVYVSCNPAT ARDL L YK+ +
Sbjct: 400 IITDPPRAGMHDDVINTILFAEPQRIVYVSCNPATQARDLSLL---------DAKYKVMA 450
Query: 201 LQPVDMFPHTPHIECVCLLE 220
+QPVDMFPHT H+E V LLE
Sbjct: 451 VQPVDMFPHTHHVENVVLLE 470
>gi|418963257|ref|ZP_13515096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
anginosus subsp. whileyi CCUG 39159]
gi|383343372|gb|EID21556.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
anginosus subsp. whileyi CCUG 39159]
Length = 552
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN +G+E + LYG+ IT+ + FQI+A +F+Q NT AE LY+ D
Sbjct: 249 MQNINDQPGNAILGKEFHVLYGQDYITDRMLDNDFQIAAPAFYQVNTEMAEKLYQTAIDF 308
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L + +IV+D + G GTIGL++A+ VK VYG EV+PQA+ ++ +NAKLN ISNA +V
Sbjct: 309 AELSIE--DIVVDAYSGIGTIGLSVAKHVKEVYGVEVIPQAVENSKKNAKLNGISNAHYV 366
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ N KP +++ DP R G+ IK + + +IVY+SCN AT ARD+
Sbjct: 367 CDSAENAIKKWLNQGIKPSVIMVDPPRKGLTESFIKSSISMNPKKIVYISCNVATMARDI 426
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKL +QPVD+FP T H+E V LL
Sbjct: 427 K-LYQELG-------YKLTKVQPVDLFPMTHHVETVALL 457
>gi|345515514|ref|ZP_08795016.1| RNA methyltransferase [Bacteroides dorei 5_1_36/D4]
gi|229436147|gb|EEO46224.1| RNA methyltransferase [Bacteroides dorei 5_1_36/D4]
Length = 473
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/200 (47%), Positives = 123/200 (61%), Gaps = 12/200 (6%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G +I E + GL F+I A SF+QTN+ QA LYK+ + A L G+E+V DL+ GTGTI
Sbjct: 282 GNDHIFEEMEGLRFKIGAKSFYQTNSGQAYNLYKVARNFARL--TGNELVYDLYTGTGTI 339
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI-GGDFGNAFPKPDI 140
++R K V G E VP+AI DA N+ +N I N F GD+ I +F + +PD+
Sbjct: 340 ANFVSRQAKKVIGIEYVPEAIEDAKVNSAINGIDNTLFYAGDMKDILTQEFISQHGRPDV 399
Query: 141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKS 200
+I+DP R GMH +I +L + RIVYVSCNPAT ARDL L YK+ +
Sbjct: 400 IITDPPRAGMHDDVINTILFAEPQRIVYVSCNPATQARDLSLL---------DAKYKVMA 450
Query: 201 LQPVDMFPHTPHIECVCLLE 220
+QPVDMFPHT H+E V LLE
Sbjct: 451 VQPVDMFPHTHHVENVVLLE 470
>gi|325832711|ref|ZP_08165474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1]
gi|325485850|gb|EGC88311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1]
Length = 525
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 124/220 (56%), Gaps = 11/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N +GE E TLYG I + L GL+F+IS+ SF+Q N Q EVLY+ D
Sbjct: 217 VQNVNERQTNVILGEREQTLYGPGFILDKLCGLSFRISSQSFYQVNAVQTEVLYERAIDL 276
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQAISDACRNAKLNNISNATF 119
AG GSE +D +CGTGTIGL A R + V G + V A+ DA NAK N + NA F
Sbjct: 277 AGF--TGSETAIDAYCGTGTIGLVAAKRGARQVIGVDTVASAVRDARENAKHNGVENARF 334
Query: 120 VQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
GD + A D+++ DP R G + + + L RIVY+SCNP T RD
Sbjct: 335 AVGDAGAFMRERAAAGDAVDVLLMDPPRAGSSEEFLAAAVTLAPRRIVYISCNPTTQVRD 394
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +L +G Y ++++QPVDMFPHT HIE V LL
Sbjct: 395 LAFLRQ-------RG-YAVRTVQPVDMFPHTDHIETVALL 426
>gi|284802149|ref|YP_003414014.1| hypothetical protein LM5578_1904 [Listeria monocytogenes 08-5578]
gi|284995291|ref|YP_003417059.1| hypothetical protein LM5923_1856 [Listeria monocytogenes 08-5923]
gi|284057711|gb|ADB68652.1| hypothetical protein LM5578_1904 [Listeria monocytogenes 08-5578]
gi|284060758|gb|ADB71697.1| hypothetical protein LM5923_1856 [Listeria monocytogenes 08-5923]
Length = 462
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 125/219 (57%), Gaps = 11/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + + G+E + L GK +I E L L F +SA +FFQ N Q E LY+ +E
Sbjct: 247 MQNVNQAKSSLIFGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKA 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
L GSE ++D +CG GTIG A VK V G +++P++I DA RNA+ N I N +
Sbjct: 307 LVL--TGSETLVDAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYE 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + +PD VI DP R G LIK LL ++A ++VYVSCNP+T ARDL
Sbjct: 365 VGKAEDVLPKWVKEGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y+++ +QPVDMFP T H+E V L+
Sbjct: 425 ALLAKK---------YRIRYMQPVDMFPQTAHVETVILM 454
>gi|182419838|ref|ZP_02951078.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
5521]
gi|237666723|ref|ZP_04526708.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182376386|gb|EDT73968.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
5521]
gi|237657922|gb|EEP55477.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 451
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 125/215 (58%), Gaps = 13/215 (6%)
Query: 5 NTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLR 64
N S + + E+ LYGK I E L GL F IS SFFQTNT AE LY ++ D G
Sbjct: 247 NDSKSDAVIPEKVNVLYGKDYIREELLGLEFNISPFSFFQTNTKGAEQLYSMVRDFMG-- 304
Query: 65 DDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL 124
D +++V DL+CGTGTIG +A K V G E++ +A+ A NAKLN + N F+ GD+
Sbjct: 305 DSENKVVFDLYCGTGTIGQIVAPKAKKVIGIELIEEAVEAAKENAKLNGLENCEFLAGDV 364
Query: 125 NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184
+I N KPDI+I DP R G+H K + +++K AP I+YVSCNP T DL+ L
Sbjct: 365 AEI---IKNVKDKPDIIILDPPRSGVHPKALDYVIKFNAPEIIYVSCNPKTLVTDLEVLT 421
Query: 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
KG YK+ + DMFP+TPH E V L
Sbjct: 422 Q-------KG-YKVVQTKVKDMFPNTPHAETVVKL 448
>gi|373499665|ref|ZP_09590069.1| hypothetical protein HMPREF9140_00187 [Prevotella micans F0438]
gi|371956851|gb|EHO74629.1| hypothetical protein HMPREF9140_00187 [Prevotella micans F0438]
Length = 475
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 129/220 (58%), Gaps = 13/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
V+ N + + L+ G +I E + L F++ SF+QTNT QA LY +
Sbjct: 265 VDNQKANDTFSDLSVQLFKGNDHIFELMDNLKFKVGPKSFYQTNTEQAYRLYSVARQFVQ 324
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E+V DL+ GTGTI +AR + V G E VP+AI DA N+++NNI N F G
Sbjct: 325 L--TGDELVYDLYTGTGTIANFVARQARQVIGIEYVPEAIHDARINSQINNIENTLFFAG 382
Query: 123 DL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ N + +F + +PD++I+DP R GMH +I ++K + RIVYVSCNPAT ARDL
Sbjct: 383 DMKNILIPEFISEHGRPDVIITDPPRAGMHPDVIDTIIKARPARIVYVSCNPATQARDLA 442
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L YK+ ++QPVDMFPHTPH+E V LE+
Sbjct: 443 LL---------DRYYKVTAVQPVDMFPHTPHVENVVRLEI 473
>gi|300770388|ref|ZP_07080267.1| 23S rRNA (uracil-5-)-methyltransferase [Sphingobacterium
spiritivorum ATCC 33861]
gi|300762864|gb|EFK59681.1| 23S rRNA (uracil-5-)-methyltransferase [Sphingobacterium
spiritivorum ATCC 33861]
Length = 469
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 128/220 (58%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T ++ + G+ I E + GL ++I SF+QTN+ QA LYK+ + AGL
Sbjct: 260 INQKKNDTIFDQDIHIFKGRDFIYEEMEGLKYKIGPKSFYQTNSLQAYELYKITREFAGL 319
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ G GTI +A+ + V G E VP AI DA N+ +N I N F GD
Sbjct: 320 T--GDELVYDLYTGAGTIANFVAKTAREVIGVEYVPTAIEDAKINSAINQIGNTKFYAGD 377
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + DF KPD+VI+DP R GMH +++ LL+++A +IVYVSCN AT ARDL
Sbjct: 378 MKDVLTADFIAEHGKPDVVITDPPRAGMHGDVVQRLLEMEAEKIVYVSCNAATQARDLAL 437
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y + ++PVDMFPHT H+E V LL+L
Sbjct: 438 LNEK---------YTVDRIKPVDMFPHTQHVENVVLLKLK 468
>gi|407474468|ref|YP_006788868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium acidurici
9a]
gi|407050976|gb|AFS79021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium acidurici
9a]
Length = 455
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 130/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N +G++ LYG I + + L F IS SFFQ N+ Q E+LYK +
Sbjct: 239 VQNINKNKTNLVLGDKNKVLYGDEKIIDYIGALKFNISPQSFFQINSIQTEILYKKALEY 298
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V D++CG GTI L LA+ K VYG EV+ +AI DA NA+LN I N F
Sbjct: 299 ADLK--GKETVYDIYCGIGTISLFLAQKAKKVYGIEVISEAIEDAKENAELNGIENVEFY 356
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+G + + K D+++ DP R G +++ ++ +K R+VYVSCNP+T ARDL
Sbjct: 357 EGTAETVLPELYKEGIKADVIVLDPPRKGCEKEVLDTIVSMKPERVVYVSCNPSTLARDL 416
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+YL + KG + +K +QPVD+F + H+ECV LL
Sbjct: 417 NYLSN-------KG-FLVKEVQPVDVFAGSMHVECVVLL 447
>gi|422303482|ref|ZP_16390833.1| putative enzyme [Microcystis aeruginosa PCC 9806]
gi|389791561|emb|CCI12652.1| putative enzyme [Microcystis aeruginosa PCC 9806]
Length = 455
Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 123/218 (56%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N GN G + T+ G+ ITE GLT+Q++A++FFQ NT AE L +I C
Sbjct: 242 NYNPDRGNAIFGAQTTTIAGRDYITEKFAGLTYQLAADTFFQVNTEAAEALLAVI--CQK 299
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EI++D +CG GT L LA+ VK V G E ++ A NA+LNNI+N TF+ G
Sbjct: 300 LELKGEEILIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNNITNTTFILG 359
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K KPDI++ DP R G ++ LL+L++ RIVY+SC AT ARDL Y
Sbjct: 360 AVEKT---LPQLTVKPDIILLDPPRKGCDRSVLDSLLQLQSQRIVYISCQSATLARDLQY 416
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
LC G Y+L +Q D FP TPH+EC L
Sbjct: 417 LCK-------TGDYQLLEVQTADFFPQTPHVECAAFLR 447
>gi|256752408|ref|ZP_05493268.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
CCSD1]
gi|256748743|gb|EEU61787.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
CCSD1]
Length = 452
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 133/219 (60%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ N S + V E+ LYGK + E L GL F+ISA SFFQTN++ AE LY+ + +
Sbjct: 242 LHTQNDSWSDAVVCEKLNVLYGKDYLIEELLGLKFKISAFSFFQTNSYGAEKLYETVREF 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AG D +IV DL+ GTGTIG+ +A K V G E+V +A+ A NA+LN + N TF+
Sbjct: 302 AG--DVSDKIVFDLYSGTGTIGIIMAPMAKKVIGIELVEEAVMSARENAELNGLKNCTFI 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD++K + PD+VI DP R G++ K ++ ++K ++VYVSCNP + ARDL
Sbjct: 360 AGDVSKKLKEIKEM---PDVVIVDPPRSGINPKALEDIIKFNPQKVVYVSCNPESLARDL 416
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+G YK+ ++ VDMFPHT H+ECV L+
Sbjct: 417 KIFS--------EGGYKVDKVKCVDMFPHTYHVECVTLM 447
>gi|407796698|ref|ZP_11143650.1| RNA methyltransferase, TrmA family protein [Salimicrobium sp. MJ3]
gi|407018852|gb|EKE31572.1| RNA methyltransferase, TrmA family protein [Salimicrobium sp. MJ3]
Length = 470
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 125/222 (56%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT + +G++E L+GK IT+T+ G+ F+ISA SF+Q N Q E LY +
Sbjct: 257 IQNINTRSDSMVLGKQEKVLFGKGYITDTIGGMEFEISAKSFYQINPVQTEKLYGKAVEL 316
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E V+D +CG GTIGL ++ V G E+ A+ DA RN++ N ++NA F
Sbjct: 317 AGL--TGKETVIDAYCGIGTIGLLASKQAGKVIGVEMNKGAVKDAIRNSRHNKVTNARFY 374
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+GD K D+VI DP R G + ++KL R+VYVSCNP T RDL
Sbjct: 375 EGDAGNFMMKMAAEGKKADVVILDPPRSGSDEAFLSSVVKLGPERVVYVSCNPETQVRDL 434
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
YL K YK++ + PVDMFP T H+E LLE S
Sbjct: 435 HYLK--------KHGYKVQEIHPVDMFPQTYHVETAVLLEKS 468
>gi|404393662|ref|ZP_10985572.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium CM2]
gi|404278834|gb|EJZ44330.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium CM2]
Length = 544
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 130/222 (58%), Gaps = 15/222 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N + ++ LYGK I + + LTF I NSF+Q N+ Q E +YK D
Sbjct: 240 VQNVNTKKTNVILSDKNILLYGKEYIQDMIENLTFNIYPNSFYQVNSIQMEKMYKRALDY 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G+E V DL+CG GTI L L++ K VYG EVV QAI A +NAK+NNI NA F+
Sbjct: 300 ANLQ--GTETVYDLYCGIGTITLLLSQKCKTVYGIEVVAQAIESAKQNAKINNIENAKFI 357
Query: 121 QGDLNKIGGDFGNAFPK---PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCA 177
G K+ + N K P++++ DP R G K++ +L +K +I+Y+SCNP+T A
Sbjct: 358 CG---KVEDEIENLVAKSNMPNVIVLDPARKGCEEKVLDTILNVKPEKIIYISCNPSTLA 414
Query: 178 RDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
RDL L Y+L+ + P D+F HT H+E V LL
Sbjct: 415 RDLKKLLST-------KEYELQEVTPYDLFSHTMHVETVALL 449
>gi|422876112|ref|ZP_16922582.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1056]
gi|332362548|gb|EGJ40348.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1056]
Length = 465
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 135/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G++ TLYG+ IT+ + G FQI+A +F+Q NT AE LY+ D
Sbjct: 253 MQNINDQPGNAIFGKDWRTLYGQDYITDQMLGHDFQIAAPAFYQVNTEMAEKLYQTAIDF 312
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA +N I+NA++V
Sbjct: 313 SELTSD--DVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVKNSRKNAAINGITNASYV 370
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ ++ + D+++ DP R G+ IK + ++ +I Y+SCN AT ARD+
Sbjct: 371 CAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDI 430
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 431 K-LYQELG-------YELKKVQPVDLFPQTHHVECVNLL 461
>gi|227538859|ref|ZP_03968908.1| TrmA family RNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241368|gb|EEI91383.1| TrmA family RNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 469
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 128/220 (58%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T ++ + G+ I E + GL ++I SF+QTN+ QA LYK+ + AGL
Sbjct: 260 INQKKNDTIFDQDIHIFKGRDFIYEEMEGLKYKIGPKSFYQTNSLQAYELYKITREFAGL 319
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ G GTI +A+ + V G E VP AI DA N+ +N I N F GD
Sbjct: 320 T--GDELVYDLYTGAGTIANFVAKTAREVIGVEYVPTAIEDAKINSAINQIGNTKFYAGD 377
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + DF KPD+VI+DP R GMH +++ LL+++A +IVYVSCN AT ARDL
Sbjct: 378 MKDVLTADFIAEHGKPDVVITDPPRAGMHGDVVQRLLEMEADKIVYVSCNAATQARDLAL 437
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L Y + ++PVDMFPHT H+E V LL+L
Sbjct: 438 LNEK---------YTVDRIKPVDMFPHTQHVENVVLLKLK 468
>gi|350264945|ref|YP_004876252.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|349597832|gb|AEP85620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus subtilis
subsp. spizizenii TU-B-10]
Length = 460
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 127/220 (57%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+V +AI DA RNA+LN I+NA F
Sbjct: 307 AELQ--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVSEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++++K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L G Y + +QPVDMFPHT H+ECV +LE
Sbjct: 425 RVLE--------DGGYATREVQPVDMFPHTNHVECVAVLE 456
>gi|312112373|ref|YP_003990689.1| TrmA family RNA methyltransferase [Geobacillus sp. Y4.1MC1]
gi|311217474|gb|ADP76078.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y4.1MC1]
Length = 459
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 126/220 (57%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G+E L+G I + + + F ISA SF+Q N Q +VLY+ +
Sbjct: 246 IQNINPKKTNVIMGDETKVLWGAEYIYDYIGDIQFAISARSFYQVNPAQTKVLYEKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ K V+G EVVP+AI DA RNA LN I+N F
Sbjct: 306 AQL--TGEETVIDAYCGIGTISLFLAKKAKKVFGVEVVPEAIEDAKRNAALNRITNVEFA 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + + D ++ DP R G L++ ++ +K R+VYVSCNPAT ARDL
Sbjct: 364 VGEAEAVIPKWYKQGIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L G Y+ +QPVDMFPHT H+EC L++
Sbjct: 424 RILED--------GGYQTLEVQPVDMFPHTAHVECCALIK 455
>gi|421767549|ref|ZP_16204298.1| RNA methyltransferase, TrmA family [Lactococcus garvieae DCC43]
gi|407623967|gb|EKF50758.1| RNA methyltransferase, TrmA family [Lactococcus garvieae DCC43]
Length = 450
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 127/217 (58%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
+VNTS GN G + L GK IT+++ G FQISA +F+Q NT QAE LY+L D A
Sbjct: 241 SVNTSTGNAIFGSKFELLSGKDYITDSMLGKDFQISARAFYQVNTAQAEKLYQLAYDFAD 300
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ ++V+D + G GTIGL +A V VYG E++P+A+ +A NA LN I NA + G
Sbjct: 301 LK--AEDVVIDAYSGIGTIGLGMADKVAQVYGMEIIPEAVENAKVNAALNGIQNAHYEVG 358
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + +PD++ DP R G+ IK +A +VY+SCNPAT ARD+
Sbjct: 359 PAEEVMPKWSQDNIQPDVIFVDPPRKGLDESFIKAATATQARAVVYISCNPATFARDVVR 418
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ Y L+ +QPVD+FP T H+ECV LL
Sbjct: 419 FE--------EEGYLLEKVQPVDLFPQTKHVECVGLL 447
>gi|421873815|ref|ZP_16305425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus
laterosporus GI-9]
gi|372457155|emb|CCF14974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus
laterosporus GI-9]
Length = 550
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 130/219 (59%), Gaps = 11/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G++ +TL+G I + + + F ISA SF+Q N Q +VLY +
Sbjct: 338 VQNINERRTNVIFGDQTFTLWGDDVIYDYIGPIKFAISARSFYQVNPEQTDVLYSKTLEY 397
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL +G+E V+D +CG GTI L LA+ K VYG E+VP+AI+DA +NA+LN + N +F
Sbjct: 398 AGL--EGNETVIDAYCGIGTISLFLAQKAKRVYGVEIVPEAIADAKKNAELNGLENVSFE 455
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + ++ D+++ DP R G L+ +L+++ ++VYVSCNP+T ARDL
Sbjct: 456 VGPAEVVIPNWRKQGVVADVIVVDPPRKGCDEALLTTILQMQPKKVVYVSCNPSTLARDL 515
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y++ +QPVDMFPHT H+E V LL
Sbjct: 516 KVLAEK---------YEVVEVQPVDMFPHTGHVESVALL 545
>gi|339301899|ref|ZP_08650978.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus agalactiae
ATCC 13813]
gi|319744646|gb|EFV96993.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus agalactiae
ATCC 13813]
Length = 468
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 128/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG I + + G T+ ISA SF+Q NT AE LY+ D
Sbjct: 255 MQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDF 314
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L + +IV+D + G GTIGL++A+ VKHVYG EVV +A+SDA NA N I+N+T+V
Sbjct: 315 SDL--NSEDIVIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYV 372
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KP +++ DP R G+ + + KA +I Y+SCN AT ARD+
Sbjct: 373 ADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDI 432
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G Y L +QPVD+FP T H+ECV LL+ S
Sbjct: 433 K-LFEELG-------YHLVKIQPVDLFPMTHHVECVVLLQRS 466
>gi|420150028|ref|ZP_14657190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 335 str. F0486]
gi|394752566|gb|EJF36246.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 335 str. F0486]
Length = 471
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 129/216 (59%), Gaps = 13/216 (6%)
Query: 7 SVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRD 65
S GN ++ ++E Y G I E + GL F+I+A SF+QTN+ QA LY++ + A L+
Sbjct: 261 SKGNDAIYDQELICYKGTDCIYEEMEGLRFKINAKSFYQTNSAQAYKLYQVARNFADLK- 319
Query: 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
G E+V DL+ GTGTI +A+ K V G E VP+AI+DA NA N I N TF GD+
Sbjct: 320 -GDELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAITDAKDNAFANGIENVTFYVGDMK 378
Query: 126 KIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184
I D F PD++I+DP R GMH ++ +L++ +IVYVSCN AT ARDL L
Sbjct: 379 NIFNDTFIEENGTPDVIITDPPRDGMHKDVVAKILQIAPKKIVYVSCNSATQARDLSLL- 437
Query: 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+ +QPVDMFP T H+E V LLE
Sbjct: 438 --------DVTYKVTKIQPVDMFPQTYHVENVVLLE 465
>gi|419780418|ref|ZP_14306268.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK100]
gi|383185577|gb|EIC78073.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK100]
Length = 452
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNDFQIAGPAFYQVNTQMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L++D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA LNNI NA +V
Sbjct: 300 AELKED--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAALNNIINAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTVILVDPPRKGLIESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLL 448
>gi|77413832|ref|ZP_00790011.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515]
gi|77160132|gb|EAO71264.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae 515]
Length = 453
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 128/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG I + + G T+ ISA SF+Q NT AE LY+ D
Sbjct: 240 MQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L + +IV+D + G GTIGL++A+ VKHVYG EVV +A+SDA NA N I+N+T+V
Sbjct: 300 SDL--NSEDIVIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KP +++ DP R G+ + + KA +I Y+SCN AT ARD+
Sbjct: 358 ADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G Y L +QPVD+FP T H+ECV LL+ S
Sbjct: 418 K-LFEELG-------YHLVKIQPVDLFPMTHHVECVALLQRS 451
>gi|225571369|ref|ZP_03780365.1| hypothetical protein CLOHYLEM_07467 [Clostridium hylemonae DSM
15053]
gi|225159845|gb|EEG72464.1| hypothetical protein CLOHYLEM_07467 [Clostridium hylemonae DSM
15053]
Length = 475
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 131/218 (60%), Gaps = 11/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
+VN N +G E L+G++ IT+ + + +QIS SF+Q N Q E LY+ + AG
Sbjct: 249 SVNREKTNVIMGREAGLLWGQAYITDYIGDIKYQISPLSFYQVNPVQTERLYETALEYAG 308
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V DL+CG GTI L LA+ KHVYG E+VPQAI DA +NA++N I NA F G
Sbjct: 309 LH--GDETVWDLYCGIGTISLFLAQKAKHVYGVEIVPQAIEDAKKNAQINGIENARFYVG 366
Query: 123 DLNKIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
+ + + N DI++ DP R G ++ ++K++ RIVYVSC+ AT ARD+
Sbjct: 367 KAEDVLPEKYENDGIHADIIVVDPPRKGCEESVLHTMVKMQPERIVYVSCDSATLARDVK 426
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
YL G G Y++K ++ VDMFPHT H E VCLL
Sbjct: 427 YL-RGSG-------YEVKRVKGVDMFPHTGHTEVVCLL 456
>gi|319946766|ref|ZP_08021000.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
ATCC 700641]
gi|417920007|ref|ZP_12563527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
australis ATCC 700641]
gi|319746814|gb|EFV99073.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus australis
ATCC 700641]
gi|342831296|gb|EGU65614.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
australis ATCC 700641]
Length = 452
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQIS +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQISGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+++ ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA LNNI+NA +V
Sbjct: 300 ADLKEE--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAALNNITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P ++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLL 448
>gi|77406146|ref|ZP_00783219.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B]
gi|77175269|gb|EAO78065.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae H36B]
Length = 453
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 128/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG I + + G T+ ISA SF+Q NT AE LY+ D
Sbjct: 240 MQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L + +IV+D + G GTIGL++A+ VKHVYG EVV +A+SDA NA N I+N+T+V
Sbjct: 300 SDL--NSEDIVIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KP +++ DP R G+ + + KA +I Y+SCN AT ARD+
Sbjct: 358 ADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G Y L +QPVD+FP T H+ECV LL+ S
Sbjct: 418 K-LFEELG-------YHLVKIQPVDLFPMTHHVECVALLQRS 451
>gi|390439023|ref|ZP_10227446.1| putative enzyme [Microcystis sp. T1-4]
gi|389837587|emb|CCI31570.1| putative enzyme [Microcystis sp. T1-4]
Length = 455
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 123/217 (56%), Gaps = 12/217 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N GN G + T+ G+ ITE GLT+Q++A++FFQ NT AE L +I C
Sbjct: 242 NYNPDRGNAIFGTQTTTIAGRDYITEKFAGLTYQLAADTFFQVNTEAAEALLAVI--CEK 299
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EI++D +CG GT L LA+ VK V G E ++ A NA+LNNI+N TF+ G
Sbjct: 300 LELKGEEILIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNNITNTTFILG 359
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K KPDI++ DP R G ++ LL+L++ RIVY+SC AT ARDL Y
Sbjct: 360 AVEKT---LPQLTVKPDIILLDPPRKGCDRSVLDSLLQLQSQRIVYISCQSATLARDLQY 416
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
LC G Y+L +Q D FP TPH+EC L
Sbjct: 417 LCK-------TGDYQLLEVQTADFFPQTPHVECAAFL 446
>gi|357239688|ref|ZP_09127022.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus ictaluri
707-05]
gi|356751444|gb|EHI68596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus ictaluri
707-05]
Length = 456
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 127/220 (57%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G+E TLYGK I +++ G T++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNTNAIFGKEFKTLYGKDTIADSMLGNTYEISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++V+D + G GTIGL+ A+ VK VYG EV+ QA+ DA +NA+LN I N FV
Sbjct: 300 SELSKD--DVVIDAYSGIGTIGLSFAKSVKKVYGVEVIEQAVLDARKNAELNGIKNVQFV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KP +++ DP R G+ IK + + +I YVSCNPAT ARD+
Sbjct: 358 TDTAEAAMEKWTKEGIKPSVILVDPPRKGLTESFIKASVAMAPAKITYVSCNPATMARDI 417
Query: 181 D-YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Y G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 KRYQELG---------YQLKKVQPVDLFPQTHHVEVVSLL 448
>gi|326335854|ref|ZP_08202033.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga sp. oral
taxon 338 str. F0234]
gi|325691998|gb|EGD33958.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga sp. oral
taxon 338 str. F0234]
Length = 469
Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 127/220 (57%), Gaps = 12/220 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N+ +T +E +G+ I E + L F+I+A SFFQTN+ QA LYK+ D A L
Sbjct: 261 INSKPNDTIYDQEVICYHGREFIHEEMEDLRFKINAKSFFQTNSLQAYQLYKVTRDFAAL 320
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E+V DL+ GTGTI +A+ K V G E VP+AI+DA NA N I N F GD
Sbjct: 321 --TGKELVYDLYTGTGTIAQFIAKGAKKVIGVESVPEAIADAKENAHTNQIYNVDFFVGD 378
Query: 124 LNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ I +F PD++I+DP R GMH +I +L++ R+VYVSCN AT ARDL
Sbjct: 379 MKNIFNEEFITKHGTPDVIITDPPRDGMHKDVIAQILRIAPKRVVYVSCNSATQARDLAL 438
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
+ YK+ ++PVDMFP T HIE V LLEL
Sbjct: 439 M---------DPMYKVVKIRPVDMFPQTYHIENVALLELK 469
>gi|336236824|ref|YP_004589440.1| TrmA family RNA methyltransferase [Geobacillus thermoglucosidasius
C56-YS93]
gi|335363679|gb|AEH49359.1| RNA methyltransferase, TrmA family [Geobacillus thermoglucosidasius
C56-YS93]
Length = 459
Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 126/220 (57%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G+E L+G I + + + F ISA SF+Q N Q +VLY+ +
Sbjct: 246 IQNINPKKTNVIMGDETKVLWGAEYIYDYIGDIQFAISARSFYQVNPAQTKVLYEKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ K V+G EVVP+AI DA RNA LN I+N F
Sbjct: 306 AQL--TGEETVIDAYCGIGTISLFLAKKAKKVFGVEVVPEAIEDAKRNAALNRITNVEFA 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + + D ++ DP R G L++ ++ +K R+VYVSCNPAT ARDL
Sbjct: 364 VGEAEAVIPKWYKQGIRADCIVVDPPRKGCDETLLQTIIAMKPKRVVYVSCNPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L G Y+ +QPVDMFPHT H+EC L++
Sbjct: 424 RILED--------GGYQTLEVQPVDMFPHTAHVECCALIK 455
>gi|226950817|ref|YP_002805908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A2 str. Kyoto]
gi|226841903|gb|ACO84569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A2 str. Kyoto]
Length = 461
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 129/220 (58%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N +GE+ TL+GK IT+ + F IS SFFQ N Q EVLYK +
Sbjct: 248 IQNINTKKTNVILGEKCITLWGKDTITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G EIV D +CGTGTI L L++ K VYG E++ +AI +A NAK N I NA F
Sbjct: 308 ANLK--GEEIVFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENRIDNAEFF 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ D + K ++V+ DP R G L++ + K RIVYVSC+ T ARDL
Sbjct: 366 VGKSEEVIPDLIDKGIKAEVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDSGTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G+G Y+ K +QPVDMFP T H+E + L++
Sbjct: 426 GIL-NGLG-------YETKEVQPVDMFPQTSHVETIVLIQ 457
>gi|407795900|ref|ZP_11142857.1| RNA methyltransferase [Salimicrobium sp. MJ3]
gi|407019720|gb|EKE32435.1| RNA methyltransferase [Salimicrobium sp. MJ3]
Length = 458
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++NVN N +G+E +YG I +++ + F ISA SF+Q N Q + LY +
Sbjct: 247 VHNVNRDKTNVILGKETTVVYGDEYIYDSIGDIRFMISAQSFYQVNPTQTKTLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR G E V+D +CG GTI L +A+ K VYG EVV +A+ DA +NA+LN+I N F
Sbjct: 307 ADLR--GGETVVDAYCGIGTISLFMAKAAKKVYGVEVVGEAVKDAKKNARLNHIDNVEFY 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+G ++ + +PD+++ DP R G L+ +L+++ RIVYVSCNP+T ARDL
Sbjct: 365 KGKAEEVMPWWRGQGLRPDVIVVDPPRKGCDEALLASMLEMEPERIVYVSCNPSTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y+ K +QPVD FP T HIECV L
Sbjct: 425 RILE--------DGGYETKEVQPVDQFPQTNHIECVTWL 455
>gi|347530514|ref|YP_004837277.1| hypothetical RNA methyltransferase-like protein [Roseburia hominis
A2-183]
gi|345500662|gb|AEN95345.1| hypothetical RNA methyltransferase-like protein [Roseburia hominis
A2-183]
Length = 474
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 130/238 (54%), Gaps = 31/238 (13%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLR-------------GLTFQISANSFFQTNTHQ 49
N+N N +GEE T++G IT+ + + + IS SF+Q N Q
Sbjct: 245 NINRKNTNVILGEETRTVWGSDYITDQIHLRDCDHDFALTDTAIAYHISPQSFYQVNPVQ 304
Query: 50 AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNA 109
E LY L AGL G E V DL+CG GTI L LA+ VYG E+VPQAI DA NA
Sbjct: 305 TEKLYSLALSYAGL--TGRETVWDLYCGIGTISLFLAQKAGKVYGVEIVPQAIEDARSNA 362
Query: 110 KLNNISNATFVQGDLNKIGGDFGNAFPK--------PDIVISDPNRPGMHMKLIKFLLKL 161
LN I+NA+F G ++ +F + PD+++ DP R G K ++ +L++
Sbjct: 363 ALNGITNASFFVGKAEEVLPEFYEKESRKPDADMLHPDVIVVDPPRKGCDEKCLETMLRM 422
Query: 162 KAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
K RIVYVSC+PAT ARDL LC G Y+L+ ++PVD F HT H+E VCLL
Sbjct: 423 KPERIVYVSCDPATLARDLKILC--------GGGYELRKVRPVDQFGHTTHVETVCLL 472
>gi|296330132|ref|ZP_06872614.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305673376|ref|YP_003865048.1| RNA methyltransferase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296152721|gb|EFG93588.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305411620|gb|ADM36739.1| putative RNA methyltransferase [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 459
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G + ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGNDTNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELK--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++++K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGITADTLVVDPPRKGCDETLLRTIVEMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L G Y +QPVDMFPHT H+ECV +L+L
Sbjct: 425 RVLE--------DGGYTTLEVQPVDMFPHTNHVECVAVLKL 457
>gi|397649484|ref|YP_006490011.1| RNA methyltransferase [Streptococcus mutans GS-5]
gi|392603053|gb|AFM81217.1| RNA methyltransferase [Streptococcus mutans GS-5]
Length = 454
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 127/220 (57%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLTPDDT--VIDAYSGIGTIGLSFAKKVKVVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ +I Y+SC+PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIKASTAMQPHKITYISCDPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G YKL +QPVD+FP T H+ECV LLE
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVSLLE 449
>gi|381208981|ref|ZP_09916052.1| RNA methyltransferase [Lentibacillus sp. Grbi]
Length = 461
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 132/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++N+N N+ G++ ++G+ I +T+ + F ISA SF+Q N Q + LY +
Sbjct: 248 VHNINDRKTNSIWGKKSKAIWGEDYIYDTIGDIKFAISAKSFYQVNPPQTKKLYDKALEY 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A R G++ V+D +CG GTI L +A+ K VYG EVVP+A+ DA +NAKLN +NA F
Sbjct: 308 A--RIGGNDTVVDAYCGIGTISLFMAQEAKKVYGVEVVPEAVDDAKKNAKLNGFTNAAFY 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ K+ + +PD+V+ DP R G +L+K +L ++ RIVYVSCNP+T ARDL
Sbjct: 366 VGEAEKVMPWWTAQGLRPDVVVVDPPRKGCDEELLKAMLGMEPKRIVYVSCNPSTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L G Y + +QPVDMFP T H+E VC L+
Sbjct: 426 RILED--------GGYVTQEVQPVDMFPQTHHVESVCWLK 457
>gi|339008225|ref|ZP_08640799.1| RNA methyltransferase, TrmA family [Brevibacillus laterosporus LMG
15441]
gi|338775428|gb|EGP34957.1| RNA methyltransferase, TrmA family [Brevibacillus laterosporus LMG
15441]
Length = 550
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 130/219 (59%), Gaps = 11/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G++ +TL+G I + + + F ISA SF+Q N Q +VLY +
Sbjct: 338 VQNINERRTNVIFGDQTFTLWGDDVIYDYIGPIKFAISARSFYQVNPEQTDVLYSKTLEY 397
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL +G+E V+D +CG GTI L LA+ K VYG E+VP+AI+DA +NA+LN + N +F
Sbjct: 398 AGL--EGNETVIDAYCGIGTISLFLAQKAKRVYGVEIVPEAIADAKKNAELNGLENVSFE 455
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + ++ D+++ DP R G L+ +L+++ ++VYVSCNP+T ARDL
Sbjct: 456 VGPAEVVIPNWRKQGIVADVIVVDPPRKGCDEALLTTILQMQPKKVVYVSCNPSTLARDL 515
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L Y++ +QPVDMFPHT H+E V LL
Sbjct: 516 KVLAEK---------YEVVEVQPVDMFPHTGHVESVALL 545
>gi|315224184|ref|ZP_07866024.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga ochracea
F0287]
gi|420158366|ref|ZP_14665184.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga
ochracea str. Holt 25]
gi|314945917|gb|EFS97926.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga ochracea
F0287]
gi|394763715|gb|EJF45785.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga
ochracea str. Holt 25]
Length = 471
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 129/216 (59%), Gaps = 13/216 (6%)
Query: 7 SVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRD 65
S GN ++ ++E Y G I E + GL F+I+A SF+QTN+ QA LY++ + A L+
Sbjct: 261 SKGNDAIYDQELICYKGTDCIYEEMEGLRFKINAKSFYQTNSAQAYKLYQVARNFADLK- 319
Query: 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
G E+V DL+ GTGTI +A+ K V G E VP+AI+DA NA N I N TF GD+
Sbjct: 320 -GDELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAITDAKDNAFANGIENVTFYVGDMK 378
Query: 126 KIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184
I D F PD++I+DP R GMH ++ +L++ +IVYVSCN AT ARDL L
Sbjct: 379 NIFNDTFIEENGTPDVIITDPPRDGMHKDVVAKILQIAPKKIVYVSCNSATQARDLSLL- 437
Query: 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+ +QPVDMFP T H+E V LLE
Sbjct: 438 --------DVTYKVTKVQPVDMFPQTYHVENVVLLE 465
>gi|261405173|ref|YP_003241414.1| TrmA family RNA methyltransferase [Paenibacillus sp. Y412MC10]
gi|261281636|gb|ACX63607.1| RNA methyltransferase, TrmA family [Paenibacillus sp. Y412MC10]
Length = 532
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N + G+ +L+G ++ E+L L F +S +FFQ N Q LY+ + AG
Sbjct: 322 NINPKKTSLIFGDRTVSLWGAESMQESLSDLQFSLSPRAFFQLNPQQTVKLYESVRAAAG 381
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V+D +CGTGTIGL LA + K V G E +P+A+ DA NA+ N +NA+F G
Sbjct: 382 L--TGKETVIDAYCGTGTIGLWLAPYAKEVRGIETIPEAVEDAKANAQRNGRANASFHVG 439
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + KPD++I+DP R G+ + ++ +L+ K R VYVSCNP+T A+D
Sbjct: 440 QAEELLPRWVKEGMKPDVIIADPPRTGLDPRFLETVLRTKPKRFVYVSCNPSTLAKDCKV 499
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L + G Y+L+ QPVDMFP T H+E V L++L
Sbjct: 500 L--------LDGGYELEWAQPVDMFPQTSHVEAVLLMKL 530
>gi|220931148|ref|YP_002508056.1| RNA methyltransferase [Halothermothrix orenii H 168]
gi|219992458|gb|ACL69061.1| RNA methyltransferase, TrmA family [Halothermothrix orenii H 168]
Length = 453
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 129/221 (58%), Gaps = 12/221 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++ + G + + + + IS +SFFQ NT Q E LY +
Sbjct: 241 LQNINPRRTNVIMGDKTLLIKGNDYYIDYIGSIRYAISPHSFFQVNTLQTERLYNTVRKY 300
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E V+D +CG G+IG+ LA + VYG EVV AI DA RNA LN I+N F+
Sbjct: 301 AGL--SGQETVVDAYCGAGSIGIYLAGEARTVYGIEVVGSAIEDAERNAALNGINNCIFI 358
Query: 121 QGDL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
+G + +K+ KPD++I DP R G+ + + +L++ P+IVYVSCNPAT ARD
Sbjct: 359 KGKVEDKLPELVDKKKIKPDVIIFDPPRKGLDKETMATVLEVLPPKIVYVSCNPATLARD 418
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L + IK CY + +QPVD+FP T H+ECV LE
Sbjct: 419 L---------KEIKACYDINEVQPVDLFPQTYHVECVVKLE 450
>gi|385260386|ref|ZP_10038534.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
SK140]
gi|385191650|gb|EIF39063.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
SK140]
Length = 451
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 131/220 (59%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQIS +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQISGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR ++V+D + G GTIGL++A+ VK VYG EV+ +A+ ++ +NA LNNI+NA +V
Sbjct: 300 AELR--AEDVVIDAYSGIGTIGLSVAKHVKEVYGVEVISEAVENSQKNAALNNITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P ++ DP R G+ IK + +A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTAILVDPPRKGLTESFIKASAQTEADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y+LK +QPVD+FP T H+ECV LLE
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVGLLE 449
>gi|374299953|ref|YP_005051592.1| RNA methyltransferase, TrmA family [Desulfovibrio africanus str.
Walvis Bay]
gi|332552889|gb|EGJ49933.1| RNA methyltransferase, TrmA family [Desulfovibrio africanus str.
Walvis Bay]
Length = 508
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 126/220 (57%), Gaps = 14/220 (6%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
+ V + EE +G + +L GL +++S +FFQTNT AE L+ L+E+ A
Sbjct: 297 HGVRRDKAAVAYAEEIVRAWGDPVLEMSLGGLRYRLSPQAFFQTNTAGAERLFGLVEEMA 356
Query: 62 GLRD--DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATF 119
GL D +G EI D +CG G + L LAR HV G+E+V A+ DA NA+LNN++N +F
Sbjct: 357 GLSDWPNGPEI-FDCYCGVGAMALRLARATGHVTGFELVEGAVRDATDNARLNNLTNCSF 415
Query: 120 VQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
V GDL + D PKPD+++ DP R GMH + +L L RIV VSC+PAT ARD
Sbjct: 416 VAGDLRRTLAD--RKLPKPDVLVIDPPRAGMHPDVAARILDLAPERIVSVSCDPATFARD 473
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y L + PVD+FPH+ H+E V LL
Sbjct: 474 AALLLPG---------YTLTRVVPVDLFPHSHHVETVALL 504
>gi|417787474|ref|ZP_12435157.1| RNA methyltransferase, TrmA family [Lactobacillus salivarius
NIAS840]
gi|334307651|gb|EGL98637.1| RNA methyltransferase, TrmA family [Lactobacillus salivarius
NIAS840]
Length = 456
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 123/220 (55%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN N +G++ L GK I +TL L F ISA SF+Q N Q E LY+L +
Sbjct: 244 MLNVNPDKTNVILGKKTIKLAGKDTIQDTLNSLKFDISAQSFYQVNPQQTEKLYQLAIED 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L +A++ K VYG E+VP+AI DA NA LN++ N F
Sbjct: 304 AELT--GKETVIDAYCGIGTISLNMAKFAKKVYGVEIVPEAIEDAKHNASLNDLENLDFE 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + KPD+++ DP R G+ LI+ + ++ ++VYVSCNPAT RD+
Sbjct: 362 VGEAEVWMEKWQKQGIKPDVIMVDPPRKGLTSSLIQSAVAMEPKKVVYVSCNPATLVRDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
G K +QPVD FP T H+E V +LE
Sbjct: 422 QEFMEL-------GYQVTKPIQPVDQFPQTTHVESVTVLE 454
>gi|257126196|ref|YP_003164310.1| (uracil-5)-methyltransferase [Leptotrichia buccalis C-1013-b]
gi|257050135|gb|ACV39319.1| (Uracil-5)-methyltransferase [Leptotrichia buccalis C-1013-b]
Length = 476
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 130/224 (58%), Gaps = 13/224 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLY----KL 56
++ N + + + E E LYG+ ++TE + GL F+IS SFFQTN+ E LY
Sbjct: 258 LHTFNDNFSDMVISESETILYGERDLTEEIFGLKFKISPYSFFQTNSQTVEKLYGKVLTY 317
Query: 57 IEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN 116
+E+ ++ D + V DLF GTGTIG +++ K VYG E+VP+A+ A NAKLNNI N
Sbjct: 318 LEEIENIKIDEA-TVFDLFSGTGTIGQIVSKKAKQVYGIELVPEAVEKANENAKLNNIQN 376
Query: 117 ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATC 176
A F+ GD+ +F N KPDI+I DP R G+ K I L+K I+YVSCNP T
Sbjct: 377 AHFIAGDVFAKLDEFDNDGIKPDILILDPPRAGVGEKTITKLVKYNTKNIIYVSCNPKTL 436
Query: 177 ARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
DL + G + Y+L VDMFP TPH+E VCLLE
Sbjct: 437 MTDL--IKFG------EFGYRLVRCSVVDMFPVTPHLEVVCLLE 472
>gi|410459580|ref|ZP_11313324.1| TrmA family RNA methyltransferase [Bacillus azotoformans LMG 9581]
gi|409930118|gb|EKN67133.1| TrmA family RNA methyltransferase [Bacillus azotoformans LMG 9581]
Length = 460
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 126/217 (58%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N+ N G++ L+G + +++ + F ISA SF+Q N Q +VLY +
Sbjct: 246 IQNINSKRTNVIFGDKTKVLWGDEYLYDSIGDIQFAISARSFYQVNPEQTKVLYDKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ VYG E+VP+AI DA RNAKLN ++N F
Sbjct: 306 AKL--SGEETVIDAYCGIGTISLFLAQKAMKVYGVEIVPEAIEDAKRNAKLNGMTNVEFE 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G +I + K D+++ DP R G +L++ ++K+K R+VYVSCNP T ARDL
Sbjct: 364 VGKSEEIIPAWHQQGIKADVIVVDPPRKGCDTELLETIIKMKPKRVVYVSCNPGTLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
L G +K +QPVDMFPHT H+ECV
Sbjct: 424 RILED--------GGFKTIEVQPVDMFPHTNHVECVV 452
>gi|335028990|ref|ZP_08522503.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
SK1076]
gi|334269691|gb|EGL88105.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus infantis
SK1076]
Length = 452
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 131/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQIS +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQISGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR+D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA LN I+NA +V
Sbjct: 300 AELRED--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASLNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTVILVDPPRKGLTESFIKASAQTGAKRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVEAVSLL 448
>gi|333897656|ref|YP_004471530.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112921|gb|AEF17858.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 452
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 135/219 (61%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ VN S + E+ LYG+ I E + GL F+ISA SFFQTN+ AE LY + +
Sbjct: 242 LHTVNDSYSDAVKCEKLEVLYGRDYIMEEILGLKFKISAFSFFQTNSKGAERLYSVAREF 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AG D ++I+ DL+CGTGTIG+ +A K V G E+V +A+ A NA+LN ++N F+
Sbjct: 302 AG--DISNKILFDLYCGTGTIGMIMAPLSKKVVGIELVEEAVDAARENARLNGLNNIQFI 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ + + + KPD+V+ DP RPG++ K + ++KL +I+YVSCNP + RDL
Sbjct: 360 AGDVAQRIKEIND---KPDVVVLDPPRPGVNPKAVMDIIKLNPEKIIYVSCNPVSLVRDL 416
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L I+ YK++ ++ VDMFPHT HIE V LL
Sbjct: 417 KML--------IQRQYKVEKVKCVDMFPHTYHIETVVLL 447
>gi|429755301|ref|ZP_19287966.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 324 str. F0483]
gi|429175188|gb|EKY16640.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 324 str. F0483]
Length = 471
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 129/216 (59%), Gaps = 13/216 (6%)
Query: 7 SVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRD 65
S GN ++ ++E Y G I E + GL F+I+A SF+QTN+ QA LY++ + A L+
Sbjct: 261 SKGNDAIYDQELICYKGTDCIYEEMEGLRFKINAKSFYQTNSAQAYKLYQVARNFADLK- 319
Query: 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
G E+V DL+ GTGTI +A+ K V G E VP+AI+DA NA N I N TF GD+
Sbjct: 320 -GDELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADAKDNAFANGIENVTFYVGDMK 378
Query: 126 KIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184
I D F PD++I+DP R GMH ++ +L++ +IVYVSCN AT ARDL L
Sbjct: 379 NIFNDTFIEENGTPDVIITDPPRDGMHKDVVAKILQIAPKKIVYVSCNSATQARDLSLL- 437
Query: 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+ +QPVDMFP T H+E V LLE
Sbjct: 438 --------DVTYKVTKVQPVDMFPQTYHVENVVLLE 465
>gi|288905623|ref|YP_003430845.1| RNA methyltransferase [Streptococcus gallolyticus UCN34]
gi|386338072|ref|YP_006034241.1| tRNA (Uracil-5-)-methyltransferase family protein [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|288732349|emb|CBI13921.1| putative RNA methyltransferase [Streptococcus gallolyticus UCN34]
gi|334280708|dbj|BAK28282.1| tRNA (Uracil-5-)-methyltransferase family protein [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 456
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 129/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYGK I +++ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 VQNINDKNTNAIFGNEFKTLYGKDTIVDSMLGNQYEISARSFYQVNTEMAERLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L + +IV+D + G GTIGL+ A+ VK VYG EV+ +A+ DA RNA LN I+NA +V
Sbjct: 300 SDLTPE--DIVIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KP +++ DP R G+ IK + ++ +I Y+SCNPAT ARD+
Sbjct: 358 ADSAEHAMATWSKDGIKPSVILVDPPRKGLTENFIKASVAMQPEKITYISCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKL+ +QPVD+FP+T H+E V LL
Sbjct: 418 K-LYQELG-------YKLQKVQPVDLFPNTHHVEAVSLL 448
>gi|429747831|ref|ZP_19281075.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 380 str. F0488]
gi|429162274|gb|EKY04606.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 380 str. F0488]
Length = 471
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 129/216 (59%), Gaps = 13/216 (6%)
Query: 7 SVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRD 65
S GN ++ ++E Y G I E + GL F+I+A SF+QTN+ QA LY++ + A L+
Sbjct: 261 SKGNDAIYDQELICYKGTDCIYEEMEGLRFKINAKSFYQTNSAQAYKLYQVARNFADLK- 319
Query: 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
G E+V DL+ GTGTI +A+ K V G E VP+AI+DA NA N I N TF GD+
Sbjct: 320 -GDELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADAKDNAFANGIENVTFYVGDMK 378
Query: 126 KIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184
I D F PD++I+DP R GMH ++ +L++ +IVYVSCN AT ARDL L
Sbjct: 379 NIFNDTFIEENGTPDVIITDPPRDGMHKDVVAKILQIAPKKIVYVSCNSATQARDLSLL- 437
Query: 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+ +QPVDMFP T H+E V LLE
Sbjct: 438 --------DVTYKVTKVQPVDMFPQTYHVENVVLLE 465
>gi|289167962|ref|YP_003446231.1| hypothetical protein smi_1119 [Streptococcus mitis B6]
gi|288907529|emb|CBJ22366.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 452
Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 133/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G +QI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDFITDQMLGNDYQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKAD--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSNKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLL 448
>gi|329930050|ref|ZP_08283675.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
HGF5]
gi|328935449|gb|EGG31921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
HGF5]
Length = 532
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N + G+ +L+G ++ E+L L F +S +FFQ N Q LY+ + AG
Sbjct: 322 NINPKKTSLIFGDRTISLWGAESMQESLSDLQFSLSPRAFFQLNPQQTVKLYESVRAAAG 381
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V+D +CGTGTIGL LA + K V G E +P+A+ DA NA+ N +NA+F G
Sbjct: 382 L--TGKETVIDAYCGTGTIGLWLAPYAKEVRGIETIPEAVEDAKANAQRNGRANASFHVG 439
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + KPD++I+DP R G+ + ++ +L+ K R VYVSCNP+T A+D
Sbjct: 440 QAEELLPRWVKEGMKPDVIIADPPRTGLDPRFLETVLRTKPKRFVYVSCNPSTLAKDCKV 499
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L + G Y+L+ QPVDMFP T H+E V L++L
Sbjct: 500 L--------LDGGYELEWAQPVDMFPQTSHVEAVLLMKL 530
>gi|393779338|ref|ZP_10367583.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 412 str. F0487]
gi|392610612|gb|EIW93389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 412 str. F0487]
Length = 471
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 129/216 (59%), Gaps = 13/216 (6%)
Query: 7 SVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRD 65
S GN ++ ++E Y G I E + GL F+I+A SF+QTN+ QA LY++ + A L+
Sbjct: 261 SKGNDAIYDQELICYKGTDCIYEEMEGLRFKINAKSFYQTNSAQAYKLYQVARNFADLK- 319
Query: 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
G E+V DL+ GTGTI +A+ K V G E VP+AI+DA NA N I N TF GD+
Sbjct: 320 -GDELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAITDAKDNAFANGIKNVTFYVGDMK 378
Query: 126 KIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184
I D F PD++I+DP R GMH ++ +L++ +IVYVSCN AT ARDL L
Sbjct: 379 NIFNDTFIEENGTPDVIITDPPRDGMHKDVVAKILQIAPKKIVYVSCNSATQARDLSLL- 437
Query: 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+ +QPVDMFP T H+E V LLE
Sbjct: 438 --------DVTYKVTKVQPVDMFPQTYHVENVVLLE 465
>gi|294497118|ref|YP_003560818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM
B1551]
gi|294347055|gb|ADE67384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium QM
B1551]
Length = 457
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 129/222 (58%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +G + L+G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 246 VQNVNSKRTNVILGNQTNVLWGEEYIYDYIGDVKFAISAKSFYQVNPEQTKVLYDKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I NA F
Sbjct: 306 ADLT--GEETVIDAYCGIGTISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNGIHNAEFE 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + ++ K D+++ DP R G L+ ++ +K ++VYVSC PAT ARDL
Sbjct: 364 VGEAEVVIPNWYKQGIKADVIVVDPPRKGCDEALLNTIIDMKPKKVVYVSCGPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L KG Y+ +QPVDMFPHT H+E V +L+L
Sbjct: 424 AILE--------KGGYETVEVQPVDMFPHTTHVENVAVLKLK 457
>gi|440755281|ref|ZP_20934483.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microcystis aeruginosa
TAIHU98]
gi|440175487|gb|ELP54856.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microcystis aeruginosa
TAIHU98]
Length = 454
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 122/218 (55%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N GN G + T+ G+ I E GLT+Q++A++FFQ NT AE L LI C
Sbjct: 242 NYNPDRGNAIFGTQTTTIAGRDYINEKFAGLTYQLAADTFFQINTEAAEALLALI--CQK 299
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EI++D +CG GT L LA+ VK V G E ++ A NA+LNNI+N TF+ G
Sbjct: 300 LELKGEEILIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNNITNTTFILG 359
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K KPDI++ DP R G ++ LL+L++ RIVY+SC AT ARDL Y
Sbjct: 360 AVEKT---LPQLTVKPDIILLDPPRKGCDRSVLDSLLQLQSQRIVYISCQSATLARDLQY 416
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
LC G Y+L +Q D FP TPH+EC L
Sbjct: 417 LCQ-------TGDYQLLEVQTADFFPQTPHVECAAFLR 447
>gi|340619096|ref|YP_004737549.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Zobellia
galactanivorans]
gi|339733893|emb|CAZ97270.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Zobellia
galactanivorans]
Length = 478
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 130/218 (59%), Gaps = 12/218 (5%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
+N +T +E G+ +I E + GL F+I+A SF+QTN+ QA LYKL + A L
Sbjct: 270 INQKQNDTIYDQEIVCFSGRDHIFEEMEGLKFKINAKSFYQTNSAQAYELYKLTREFADL 329
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
+ G E+V DL+ GTGTI +A+ K V G E VP+AI+DA NA+ N I N F GD
Sbjct: 330 K--GDELVYDLYTGTGTIAQFVAKKAKKVVGIESVPEAIADAKANAERNEIDNVDFFVGD 387
Query: 124 L-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ N +F A PD++I+DP R GMH +++ +L + ++VYVSCN AT ARDL
Sbjct: 388 MKNVFNQEFIEANGTPDVIITDPPRDGMHKDVVQQILNIAPDKVVYVSCNSATQARDLAL 447
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ K Y++ +QPVDMFP T H+E + LL+
Sbjct: 448 M---------KDTYQVIKVQPVDMFPQTHHVENIVLLK 476
>gi|422858137|ref|ZP_16904787.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1057]
gi|327461108|gb|EGF07441.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1057]
Length = 464
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 134/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G++ TLYG+ IT+ + G FQIS +F+Q NT AE LY+ D
Sbjct: 253 MQNINDQPGNAIFGKDWRTLYGQDYITDQMLGNDFQISGPAFYQVNTEMAEKLYQTAIDF 312
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA +N I+NA++V
Sbjct: 313 SELTTD--DVVLDAYSGIGTIGLSVAKQVKEVYGVEVIPEAVENSRKNAAINGITNASYV 370
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ ++ + D+++ DP R G+ IK + ++ +I Y+SCN AT ARD+
Sbjct: 371 CAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDI 430
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 431 K-LYQELG-------YELKKVQPVDLFPQTHHVECVALL 461
>gi|166366309|ref|YP_001658582.1| RNA methyltransferase [Microcystis aeruginosa NIES-843]
gi|166088682|dbj|BAG03390.1| probable RNA methyltransferase [Microcystis aeruginosa NIES-843]
Length = 455
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 124/218 (56%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N + GN G + T+ G+ ITE GLT+Q++A++FFQ NT AE L+ +I C
Sbjct: 242 NYHPERGNAIFGAQTTTIAGRDYITEKFAGLTYQLAADTFFQVNTEAAEALFAVI--CQK 299
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EI++D +CG GT L LA+ VK V G E ++ A NA+LNNI+N TF+ G
Sbjct: 300 LDLKGEEILIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNNITNTTFILG 359
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K KPDI++ DP R G ++ LL+L++ RIVY+SC AT ARDL Y
Sbjct: 360 AVEKT---LPQLTVKPDIILLDPPRKGCDRSVLDSLLRLQSQRIVYISCQSATLARDLQY 416
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
LC G Y+L +Q D FP TPH+EC L
Sbjct: 417 LCK-------TGDYQLLEVQTADFFPQTPHVECAAFLR 447
>gi|288800143|ref|ZP_06405602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
taxon 299 str. F0039]
gi|288333391|gb|EFC71870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
taxon 299 str. F0039]
Length = 473
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 92/200 (46%), Positives = 122/200 (61%), Gaps = 12/200 (6%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
G + I E + L F++ SF+QTNT QA LY + AGL G+E+V DL+ GTGTI
Sbjct: 282 GNNYIYELMEDLKFKVGPKSFYQTNTEQAYHLYDVTRKFAGLT--GNELVYDLYTGTGTI 339
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI-GGDFGNAFPKPDI 140
+A K V G E VP+AI DA N+++NNI+N F GD+ I +F +P++
Sbjct: 340 ANFVAPKAKKVIGIEYVPEAIKDAKVNSQINNINNTLFYAGDMKDILSQEFIEEHGRPEV 399
Query: 141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKS 200
+I+DP R GMH +I+ +L RIVYVSCNPAT ARDL + YK+ +
Sbjct: 400 IITDPPRAGMHPDVIQTILSAAPNRIVYVSCNPATQARDL---------ADFNKDYKVTA 450
Query: 201 LQPVDMFPHTPHIECVCLLE 220
+QPVDMFPHTPH+E V LLE
Sbjct: 451 VQPVDMFPHTPHVENVVLLE 470
>gi|449996741|ref|ZP_21823716.1| putative RNA methyltransferase [Streptococcus mutans A9]
gi|449182769|gb|EMB84780.1| putative RNA methyltransferase [Streptococcus mutans A9]
Length = 454
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 127/220 (57%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLTPDDT--VIDAYSGIGTIGLSFAKKVKVVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ +I Y+SC+PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIKASTAMQPHKITYISCDPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G YKL +QPVD+FP T H+ECV LLE
Sbjct: 418 K-LYEELG-------YKLVRVQPVDLFPQTHHVECVSLLE 449
>gi|225377937|ref|ZP_03755158.1| hypothetical protein ROSEINA2194_03597 [Roseburia inulinivorans DSM
16841]
gi|225210188|gb|EEG92542.1| hypothetical protein ROSEINA2194_03597 [Roseburia inulinivorans DSM
16841]
Length = 454
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 119/218 (54%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N + +GE+E +YGK I +TL G TF+IS SF+Q N Q E+LY AG
Sbjct: 230 NINDKQTSMVLGEKETVIYGKGYIEDTLCGCTFRISPKSFYQVNPVQTEILYNKAITYAG 289
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V+D +CGTGTIGL A K V G E+ A+ DA NAK NNI N F
Sbjct: 290 L--TGKEKVIDAYCGTGTIGLIAASKAKEVIGVELNRDAVKDAVINAKRNNIKNEQFYNA 347
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
D K + K D+V DP R G + ++KL ++VYVSCNP T ARDL Y
Sbjct: 348 DAGKFMVELAEQNKKVDVVFMDPPRAGSDEAFLSSVVKLAPKKVVYVSCNPETLARDLKY 407
Query: 183 LC-HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L HG Y+ QP DMFP T H+ECVCLL
Sbjct: 408 LTRHG---------YQAVECQPCDMFPFTKHVECVCLL 436
>gi|371777777|ref|ZP_09484099.1| RNA methyltransferase [Anaerophaga sp. HS1]
Length = 469
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 132/214 (61%), Gaps = 13/214 (6%)
Query: 9 GNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDG 67
N ++ + E LY G+ +I E + GL F+I SF+QTN+ QA LYK+ D AGL G
Sbjct: 265 ANDTITDLEVKLYSGRDHIFEEMEGLKFKIGPKSFYQTNSLQAYNLYKVARDFAGL--TG 322
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL-NK 126
+E V DL+ GTGTI +A + V G E VP+AI DA N+ +N I+N F+ GD+ N
Sbjct: 323 NETVYDLYTGTGTIANFVAHKARKVVGIEYVPEAIEDAKENSAINGITNTLFLAGDMKNI 382
Query: 127 IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186
+ D PD++I+DP R GMH ++K +L +IVYVSCN AT ARD++ +
Sbjct: 383 LTHDLFEKEGYPDVIITDPPRAGMHEDVVKTILNAAPEKIVYVSCNSATQARDINMM--- 439
Query: 187 VGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+I+ YK+ ++QPVDMFPHT H+E V LLE
Sbjct: 440 ----DIR--YKVTAIQPVDMFPHTHHVENVVLLE 467
>gi|256820983|ref|YP_003142262.1| TrmA family RNA methyltransferase [Capnocytophaga ochracea DSM
7271]
gi|256582566|gb|ACU93701.1| RNA methyltransferase, TrmA family [Capnocytophaga ochracea DSM
7271]
Length = 471
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 129/216 (59%), Gaps = 13/216 (6%)
Query: 7 SVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRD 65
S GN ++ ++E Y G I E + GL F+I+A SF+QTN+ QA LY++ + A L+
Sbjct: 261 SKGNDAIYDQELICYKGTDCIYEEMEGLRFKINAKSFYQTNSAQAYKLYQVARNFADLK- 319
Query: 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
G E+V DL+ GTGTI +A+ K V G E VP+AI+DA NA N I N TF GD+
Sbjct: 320 -GDELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADAKDNAFANGIENVTFYVGDMK 378
Query: 126 KIGGD-FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184
I D F PD++I+DP R GMH ++ +L++ +IVYVSCN AT ARDL L
Sbjct: 379 NIFNDTFIEENGTPDVIITDPPRDGMHKDVVAKILQIAPKKIVYVSCNSATQARDLSLL- 437
Query: 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
YK+ +QPVDMFP T H+E V LLE
Sbjct: 438 --------DVTYKVTKVQPVDMFPQTYHVENVVLLE 465
>gi|347521614|ref|YP_004779185.1| tRNA methyltransferase [Lactococcus garvieae ATCC 49156]
gi|385833001|ref|YP_005870776.1| tRNA methyltransferase [Lactococcus garvieae Lg2]
gi|343180182|dbj|BAK58521.1| tRNA methyltransferase [Lactococcus garvieae ATCC 49156]
gi|343182154|dbj|BAK60492.1| tRNA methyltransferase [Lactococcus garvieae Lg2]
Length = 462
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 128/217 (58%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
++NTS GN G + L GK IT+++ G FQISA +F+Q NT QAE LY+L D A
Sbjct: 253 SINTSTGNAIFGSKFKLLSGKDYITDSMLGKDFQISARAFYQVNTAQAEKLYQLAYDFAD 312
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ ++V+D + G GTIGL +A V VYG E++P+A+ +A NA LN I+NA + G
Sbjct: 313 LK--AEDVVIDAYSGIGTIGLGMADKVAQVYGMEIIPEAVENAKTNAALNGITNAQYEVG 370
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + +PD++ DP R G+ IK +A +VY+SCNPAT ARD+
Sbjct: 371 PAEEVMPQWLQDGIQPDVIFVDPPRKGLDESFIKAATATQARAVVYISCNPATFARDVVR 430
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ Y L+ +QPVD+FP T H+ECV LL
Sbjct: 431 FE--------EEGYLLEKVQPVDLFPQTKHVECVGLL 459
>gi|312865944|ref|ZP_07726165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei
F0415]
gi|311098348|gb|EFQ56571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus downei
F0415]
Length = 453
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYGK I+++L G T++ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDKNTNVVFGPEFRTLYGKDTISDSLLGKTYRISAQSFYQVNTLMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L ++V+D + G GTIGL+LA+ VK VYG EVV +A+ DA NA+ N +SNA +V
Sbjct: 300 SNL--TAEDVVIDAYSGIGTIGLSLAQEVKQVYGVEVVEKAVEDAMENARANGVSNADYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + A KP V+ DP R G+ IK ++ +I Y+SCNPAT ARD+
Sbjct: 358 CAPAEKAMVAWSKAGIKPSAVLVDPPRKGLTESFIKASAAMQPKKITYISCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G +KL +QPVD+FP T H+E V L+
Sbjct: 418 K-LYEELG-------FKLTKVQPVDLFPQTHHVETVVLM 448
>gi|403387994|ref|ZP_10930051.1| RNA methyltransferase [Clostridium sp. JC122]
Length = 466
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 128/220 (58%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++ TLYGK IT+ + F IS SFFQ N+ Q EVLY +
Sbjct: 250 IQNINNKQTNVILGQKCKTLYGKDTITDFIGEFKFNISPLSFFQINSIQTEVLYNKALEY 309
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G EIV D +CGTGTI L L++ K VYG E++PQAI +A +NA+ NN++N F+
Sbjct: 310 ADLQ--GDEIVFDAYCGTGTISLFLSQNAKKVYGVEIIPQAIQNAIKNAEENNVTNTEFI 367
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ K D+V+ DP R G L+ + K+ +IVYVSC+PAT ARDL
Sbjct: 368 VGEAENEIPKLIEKGIKADVVVVDPPRKGCEESLLHSIAKMAPKKIVYVSCDPATLARDL 427
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ L +G YK +QPVDMFP T H+E V LE
Sbjct: 428 NIL-QQLG-------YKTLEIQPVDMFPQTAHVETVVKLE 459
>gi|422859860|ref|ZP_16906504.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK330]
gi|327470743|gb|EGF16199.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK330]
Length = 469
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 135/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G++ TLYG+ IT+ + G FQI+A +F+Q NT AE LY+ D
Sbjct: 253 MQNINDQPGNAIFGKDWRTLYGQDYITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTALDF 312
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA++N I+NA++V
Sbjct: 313 SELTAD--DVVLDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSRKNAEINGIANASYV 370
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ D+ + D+++ DP R G+ IK + ++ +I Y+SCN AT ARD+
Sbjct: 371 CAPAEEAIQDWLKEGIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDI 430
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 431 K-LYQELG-------YELKKVQPVDLFPQTHHVEAVSLL 461
>gi|449920592|ref|ZP_21798576.1| putative RNA methyltransferase [Streptococcus mutans 1SM1]
gi|449158688|gb|EMB62100.1| putative RNA methyltransferase [Streptococcus mutans 1SM1]
Length = 454
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 126/220 (57%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLAPDDT--VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ +I Y+SC PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIKASTAMQPRKITYISCAPATMARDV 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G YKL +QPVD+FP T H+ECV LLE
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVSLLE 449
>gi|421732621|ref|ZP_16171739.1| RNA methyltransferase, TrmA family protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|407073429|gb|EKE46424.1| RNA methyltransferase, TrmA family protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
Length = 458
Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 127/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G+E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGDETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELQ--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIGDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++ +K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIIDMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G Y+ +QPVDMFPHT H+ECV L L
Sbjct: 425 RVLE--------DGGYQTLEVQPVDMFPHTNHVECVAKLVLK 458
>gi|407478175|ref|YP_006792052.1| TrmA family RNA methyltransferase [Exiguobacterium antarcticum B7]
gi|407062254|gb|AFS71444.1| RNA methyltransferase, TrmA family [Exiguobacterium antarcticum B7]
Length = 454
Score = 169 bits (427), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 125/218 (57%), Gaps = 10/218 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
+N+N N +G+ L+G S I + + GLT++IS +SFFQ N Q E LY + A
Sbjct: 242 HNINPDETNVILGKRNIVLHGPSVIRDQIAGLTYEISPHSFFQVNPLQTEKLYGKALEYA 301
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIV+D +CG G+I L+LA+ KHVYG E+VPQAI DA RNAK N I N +F
Sbjct: 302 QL--TGDEIVVDAYCGIGSISLSLAQQAKHVYGIEMVPQAIDDARRNAKANGIDNVSFEY 359
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + KPD+++ DP R G + ++ ++ RIVYVSCN +T ARD
Sbjct: 360 GTAETVMPALVKNGIKPDVIVVDPPRKGCDEEFLRAAAEVAPKRIVYVSCNASTQARDAK 419
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L ++ YKL + PVDMFPHT H+E V L
Sbjct: 420 LL--------VELGYKLMEVTPVDMFPHTTHVESVALF 449
>gi|160914430|ref|ZP_02076645.1| hypothetical protein EUBDOL_00434 [Eubacterium dolichum DSM 3991]
gi|158433588|gb|EDP11877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium dolichum
DSM 3991]
Length = 455
Score = 169 bits (427), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 126/218 (57%), Gaps = 10/218 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVNT N +G+EE+ LYG S IT+ + L F IS+ SF+Q N Q E LY + A
Sbjct: 246 NVNTREDNVILGKEEHVLYGNSYITDAIHDLNFHISSRSFYQVNPVQTERLYGKALEFAQ 305
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V+DL+CG GTI + LA+ KHV G E+V AI DA NAKLN I N FV
Sbjct: 306 L--SGKEEVIDLYCGVGTISMFLAQKAKHVIGVEIVDAAIRDAKINAKLNQIDNIDFVCS 363
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
D KPD+V+ DP R G + ++K++ RIVYVSC+PAT ARD+
Sbjct: 364 DAASYAKKLEKQGKKPDVVVVDPPRKGCDDLTLDSIVKMQPKRIVYVSCDPATLARDIKK 423
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L + KG Y + +QPVDMFP + H+E + LL+
Sbjct: 424 L-------DEKG-YAAQVVQPVDMFPFSFHVESIVLLQ 453
>gi|425466749|ref|ZP_18846047.1| putative enzyme [Microcystis aeruginosa PCC 9809]
gi|389830680|emb|CCI27191.1| putative enzyme [Microcystis aeruginosa PCC 9809]
Length = 455
Score = 169 bits (427), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 124/218 (56%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N + GN G + T+ G+ ITE GLT+Q++A++FFQ NT AE L+ +I C
Sbjct: 242 NYHPDRGNAIFGAQTTTIAGRDYITEKFAGLTYQLAADTFFQVNTEAAEALFAVI--CQK 299
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EI++D +CG GT L LA+ VK V G E ++ A NA+LNNI+N TF+ G
Sbjct: 300 LDLKGEEILIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNNITNTTFILG 359
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K KPDI++ DP R G ++ LL+L++ RIVY+SC AT ARDL Y
Sbjct: 360 AVEKT---LPQLTVKPDIILLDPPRKGCDRSVLDSLLRLQSQRIVYISCQSATLARDLQY 416
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
LC G Y+L +Q D FP TPH+EC L
Sbjct: 417 LCK-------TGDYQLLEVQTADFFPQTPHVECAAFLR 447
>gi|425433952|ref|ZP_18814425.1| putative enzyme [Microcystis aeruginosa PCC 9432]
gi|389679020|emb|CCH92180.1| putative enzyme [Microcystis aeruginosa PCC 9432]
Length = 455
Score = 169 bits (427), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 122/218 (55%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N GN G + T+ G+ I E GLT+Q++A++FFQ NT AE L LI C
Sbjct: 242 NYNPDRGNAIFGTQTTTIAGRDYINEKFAGLTYQLAADTFFQINTEAAEALLALI--CQK 299
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EI++D +CG GT L LA+ VK V G E ++ A NA+LNNI+N TF+ G
Sbjct: 300 LELKGEEILIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNNITNTTFILG 359
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K KPDI++ DP R G ++ LL+L++ RIVY+SC AT ARDL Y
Sbjct: 360 AVEKT---LPQLTVKPDIILLDPPRKGCDRSVLDSLLQLQSQRIVYISCQSATLARDLQY 416
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
LC G Y+L +Q D FP TPH+EC L
Sbjct: 417 LCQ-------TGDYQLLEVQTADFFPQTPHVECAAFLR 447
>gi|429504179|ref|YP_007185363.1| RNA methyltransferase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|429485769|gb|AFZ89693.1| putative RNA methyltransferase [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 464
Score = 169 bits (427), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELQ--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++ +K R+VYVSCNP T ARDL
Sbjct: 365 VGETETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIIDMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y+ +QPVDMFPHT H+ECV +L
Sbjct: 425 RVLE--------DGGYQTLEVQPVDMFPHTNHVECVAVL 455
>gi|363889657|ref|ZP_09317016.1| hypothetical protein HMPREF9628_01512 [Eubacteriaceae bacterium
CM5]
gi|361966526|gb|EHL19432.1| hypothetical protein HMPREF9628_01512 [Eubacteriaceae bacterium
CM5]
Length = 235
Score = 169 bits (427), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 94/223 (42%), Positives = 130/223 (58%), Gaps = 15/223 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N + ++ LYG+ I + + LTF I NSF+Q N+ Q E +YK D
Sbjct: 21 VQNVNTKKTNVILSDKNILLYGREYIQDMIENLTFNIYPNSFYQVNSIQMEKMYKRALDY 80
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G+E V DL+CG GTI L L++ K VYG EVV QAI A +NAK+NNI NA F+
Sbjct: 81 ANLQ--GTETVYDLYCGIGTITLLLSQKCKTVYGIEVVAQAIESAKQNAKINNIENAKFI 138
Query: 121 QGDLNKIGGDFGNAFPK---PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCA 177
G K+ + N K P++++ DP R G K++ +L +K +I+Y+SCNP+T A
Sbjct: 139 CG---KVEDEIENLVAKSNMPNVIVLDPARKGCEEKVLDTILNVKPEKIIYISCNPSTLA 195
Query: 178 RDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
RDL L Y+LK + P D+F HT HIE V L+
Sbjct: 196 RDLKKLLSTQE-------YELKEVTPYDLFSHTMHIESVTFLK 231
>gi|153940444|ref|YP_001392724.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. Langeland]
gi|384463688|ref|YP_005676283.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. 230613]
gi|152936340|gb|ABS41838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. Langeland]
gi|295320705|gb|ADG01083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. 230613]
Length = 461
Score = 169 bits (427), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 97/220 (44%), Positives = 128/220 (58%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N +GE+ TL+GK IT+ + F IS SFFQ N Q EVLYK +
Sbjct: 248 IQNINTKKTNVILGEKCITLWGKDIITDYIDKFKFNISPLSFFQVNPIQTEVLYKKALEF 307
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G EIV D +CGTGTI L L++ K VYG E++ +AI +A NAK N I NA F
Sbjct: 308 ANLK--GEEIVFDAYCGTGTISLFLSQKAKKVYGVEIIKEAIDNAKDNAKENKIDNAEFF 365
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ D + K D+V+ DP R G L++ + K RIVYVSC+P T ARDL
Sbjct: 366 VGKSEEVIPDLIDKGIKADVVVVDPPRKGCEKTLLEAIAATKPKRIVYVSCDPGTLARDL 425
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L + +G Y+ K +QPVDMFP T H+E LL+
Sbjct: 426 GIL-NELG-------YETKEVQPVDMFPQTSHVETCVLLQ 457
>gi|425443247|ref|ZP_18823471.1| putative enzyme [Microcystis aeruginosa PCC 9717]
gi|389715472|emb|CCI00145.1| putative enzyme [Microcystis aeruginosa PCC 9717]
Length = 455
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 124/218 (56%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N + GN G + T+ G+ ITE GLT+Q++A++FFQ NT AE L+ +I C
Sbjct: 242 NYHPERGNAIFGAQTTTIAGRDYITEKFAGLTYQLAADTFFQVNTEAAEALFAVI--CQK 299
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EI++D +CG GT L LA+ VK V G E ++ A NA+LNNI+N TF+ G
Sbjct: 300 LDLKGEEILIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNNITNTTFILG 359
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K KPDI++ DP R G ++ LL+L++ RIVY+SC AT ARDL Y
Sbjct: 360 AVEKT---LPQLTVKPDIILLDPPRKGCDRSVLDSLLQLQSQRIVYISCQSATLARDLQY 416
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
LC G Y+L +Q D FP TPH+EC L
Sbjct: 417 LCK-------TGDYQLLEVQTADFFPQTPHVECAAFLR 447
>gi|430757207|ref|YP_007210611.1| RNA methyltransferase YefA [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|430021727|gb|AGA22333.1| putative RNA methyltransferase YefA [Bacillus subtilis subsp.
subtilis str. BSP1]
Length = 459
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 128/221 (57%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I+NA F
Sbjct: 307 AELQ--GEETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGITNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++++K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIVEMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L Y+ +QPVDMFPHT H+ECV +L+L
Sbjct: 425 RVLE--------DSGYQTLEVQPVDMFPHTNHVECVVVLKL 457
>gi|159029832|emb|CAO90886.1| trmA [Microcystis aeruginosa PCC 7806]
Length = 460
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 123/218 (56%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N GN G + T+ G+ I E GLT+Q++A++FFQ NT AE L+ LI C
Sbjct: 247 NYNPDRGNAIFGTQTTTIAGRDYINEKFAGLTYQLAADTFFQINTEAAEALFSLI--CQK 304
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EI++D +CG GT L LA+ VK V G E ++ A NA+LN+I+N TF+ G
Sbjct: 305 LELKGEEILIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNDITNTTFILG 364
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K KPDI++ DP R G ++ LL+L++ RIVY+SC AT ARDL Y
Sbjct: 365 AVEKT---LPQLTVKPDIILLDPPRKGCDRSVLDSLLQLQSQRIVYISCQSATLARDLQY 421
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
LC G Y+L +Q D FP TPH+EC L
Sbjct: 422 LCK-------TGDYQLLEVQTADFFPQTPHVECAAFLR 452
>gi|420144141|ref|ZP_14651629.1| tRNA methyltransferase [Lactococcus garvieae IPLA 31405]
gi|391855593|gb|EIT66142.1| tRNA methyltransferase [Lactococcus garvieae IPLA 31405]
Length = 475
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 128/217 (58%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
++NTS GN G + L GK IT+++ G FQISA +F+Q NT QAE LY+L D A
Sbjct: 266 SINTSTGNAIFGSKFKLLSGKDYITDSMLGKDFQISARAFYQVNTAQAEKLYQLAYDFAD 325
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ ++V+D + G GTIGL +A V VYG E++P+A+ +A NA LN I+NA + G
Sbjct: 326 LK--AEDVVIDAYSGIGTIGLGMADKVAQVYGMEIIPEAVENAKTNAALNGITNAQYEVG 383
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + +PD++ DP R G+ IK +A +VY+SCNPAT ARD+
Sbjct: 384 PAEEVMPQWLQDGIQPDVIFVDPPRKGLDESFIKAATATQARAVVYISCNPATFARDVVR 443
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ Y L+ +QPVD+FP T H+ECV LL
Sbjct: 444 FE--------EEGYLLEKVQPVDLFPQTKHVECVGLL 472
>gi|270292705|ref|ZP_06198916.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
M143]
gi|270278684|gb|EFA24530.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
M143]
Length = 455
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNDFQIAGPAFYQVNTQMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR+D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA LNNI+NA +V
Sbjct: 300 AELRED--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAALNNITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V L+
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVEAVVLM 448
>gi|339443911|ref|YP_004709915.1| SAM-dependent methyltransferase [Eggerthella sp. YY7918]
gi|338903663|dbj|BAK43514.1| SAM-dependent methyltransferase [Eggerthella sp. YY7918]
Length = 526
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 123/220 (55%), Gaps = 11/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN N +G+ E LYG I +TL GL+F+IS+ SF+Q N Q EVLY+
Sbjct: 213 VQNVNERQTNVILGQHEQRLYGPGFILDTLCGLSFRISSQSFYQVNAQQTEVLYETAIAL 272
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQAISDACRNAKLNNISNATF 119
AG G+E +D +CGTGTIGL A R V G + V AI DA NA+ N + NA F
Sbjct: 273 AGF--TGTESAIDAYCGTGTIGLVAAKRGAAQVTGVDTVASAIKDARENAQHNGVENARF 330
Query: 120 VQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
V GD + A + D+++ DP R G + ++ L RIVY+SCNP T RD
Sbjct: 331 VVGDAGDFMCELAAAGERADVLLMDPPRAGASEEFLEAAATLAPARIVYISCNPETQVRD 390
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +L K Y ++ +QPVDMFPHT HIE VCLL
Sbjct: 391 LAFL--------RKRDYVVRVVQPVDMFPHTDHIETVCLL 422
>gi|320547084|ref|ZP_08041380.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC
9812]
gi|320448210|gb|EFW88957.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus equinus ATCC
9812]
Length = 455
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 129/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G + TLYGK I +++ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 VQNINDKNTNAIFGNDFRTLYGKDTIVDSMLGNQYEISARSFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D +IV+D + G GTIGL+ A+ VK VYG EV+ +A+ DA RNA LN I+NA +V
Sbjct: 300 SDLTAD--DIVIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KP +++ DP R G+ IK + ++ ++ Y+SCNPAT ARD+
Sbjct: 358 ADSAEHAMATWSKNGIKPSVILVDPPRKGLTENFIKASVAMQPEKVTYISCNPATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKL+ +QPVD+FP+T H+E V LL
Sbjct: 418 K-LYQELG-------YKLQKVQPVDLFPNTHHVETVVLL 448
>gi|334339977|ref|YP_004544957.1| TrmA family RNA methyltransferase [Desulfotomaculum ruminis DSM
2154]
gi|334091331|gb|AEG59671.1| RNA methyltransferase, TrmA family [Desulfotomaculum ruminis DSM
2154]
Length = 461
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N G +G E + L G+ +I + + L F+ISA+SF+Q N+ Q E LY + +
Sbjct: 249 IRNINHQPGRAVLGRENHLLAGEESIMDWIEDLKFKISASSFYQVNSIQTEALYGKVLEY 308
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL+ G E V+D +CG GTI L LAR + G E+V QA+ DA +NA LNN++N F
Sbjct: 309 AGLQ--GDETVVDAYCGIGTIALFLARHAGEMIGLEIVEQAVEDARQNALLNNLTNTRFY 366
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + K+ + K D+VI DP R G +++ + ++ PRIVYVSC+PAT ARDL
Sbjct: 367 SGPVEKLLPQMASKGQKADVVILDPPRKGCAREVLNAVTAMQVPRIVYVSCDPATLARDL 426
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L K Y+ +QPVDMFP T H E V L+
Sbjct: 427 GILS--------KMGYQAAKVQPVDMFPWTSHCEAVGLV 457
>gi|28211569|ref|NP_782513.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
gi|50401760|sp|Q892Z2.1|Y1941_CLOTE RecName: Full=Uncharacterized RNA methyltransferase CTC_01941
gi|28204010|gb|AAO36450.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
Length = 456
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 133/219 (60%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N S+ + ++ LYG+ I E L GL F+I+ SFFQTN+ AE LY ++ D
Sbjct: 245 LHTINDSLSDVVQCDKLNILYGRDYIIEDLLGLKFKITPLSFFQTNSKGAEKLYSIVRDF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G + S+ V DL+CGTGTIG +A K V G E++ +A+ A NAKLNN++N F+
Sbjct: 305 IG--ESKSKTVFDLYCGTGTIGQIVAPEAKKVIGIELIEEAVESARENAKLNNLNNCEFI 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ ++ + KPD++I DP RPG+H K +++++K +P IVYVSCNP T DL
Sbjct: 363 AGDIAQVIKEVKQ---KPDVIILDPPRPGVHPKALEYVIKFDSPTIVYVSCNPKTLVEDL 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L ++ Y ++ ++ +DMFP TPH+E V L
Sbjct: 420 KVL--------VENGYVIEKVKGMDMFPSTPHVETVVGL 450
>gi|374375460|ref|ZP_09633118.1| RNA methyltransferase, TrmA family [Niabella soli DSM 19437]
gi|373232300|gb|EHP52095.1| RNA methyltransferase, TrmA family [Niabella soli DSM 19437]
Length = 502
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 124/201 (61%), Gaps = 12/201 (5%)
Query: 22 GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81
GK + E L +F+I SFFQTNT QAE LY++ D A L GSE + DL+CGTG+I
Sbjct: 302 GKGYVVEKLEDYSFKIGPKSFFQTNTRQAEQLYRVTRDFAEL--SGSETLYDLYCGTGSI 359
Query: 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD-FGNAFPKPDI 140
G+ ++ + G E++ AI DA NA LN++ F GD+ I D F +PD+
Sbjct: 360 GIFCSKQAGTIIGVEMIDAAIEDAKENAALNSLEKTHFYAGDVIDICNDAFFEQHGRPDV 419
Query: 141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKS 200
+++DP R GMH KL++ + ++ AP +VYVSCNPAT ARDL L D+ Y++
Sbjct: 420 IVTDPPRAGMHEKLVRKINEMAAPTVVYVSCNPATQARDLALL-----DEK----YQVTK 470
Query: 201 LQPVDMFPHTPHIECVCLLEL 221
+QPVDMFPHT HIE V L+L
Sbjct: 471 VQPVDMFPHTLHIENVVQLKL 491
>gi|450005441|ref|ZP_21826649.1| putative RNA methyltransferase [Streptococcus mutans NMT4863]
gi|449188517|gb|EMB90224.1| putative RNA methyltransferase [Streptococcus mutans NMT4863]
Length = 453
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 127/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLAPDDT--VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ +I Y+SC PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIKASTAMQPRKITYISCAPATMARDV 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G YKL +QPVD+FP T H+ECV LL+ S
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVVLLQRS 451
>gi|425458799|ref|ZP_18838285.1| putative enzyme [Microcystis aeruginosa PCC 9808]
gi|389823985|emb|CCI27430.1| putative enzyme [Microcystis aeruginosa PCC 9808]
Length = 455
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 123/218 (56%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N GN G + T+ G+ I E GLT+Q++A++FFQ NT AE L+ LI C
Sbjct: 242 NYNPDRGNAIFGAQTTTIAGRDYINEKFAGLTYQLAADTFFQVNTEAAEALFALI--CQK 299
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EI++D +CG GT L LA+ VK V G E ++ A NA+LN+I+N TF+ G
Sbjct: 300 LDLKGEEILIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNDITNTTFILG 359
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K KPDI++ DP R G ++ LL+L++ RIVY+SC AT ARDL Y
Sbjct: 360 AVEKT---LPQLTVKPDIILLDPPRKGCDRSVLDSLLQLQSQRIVYISCQSATLARDLQY 416
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
LC G Y+L +Q D FP TPH+EC L
Sbjct: 417 LCQ-------TGDYQLLEVQTADFFPQTPHVECAAFLR 447
>gi|443657144|ref|ZP_21131863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microcystis aeruginosa
DIANCHI905]
gi|443333273|gb|ELS47841.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microcystis aeruginosa
DIANCHI905]
Length = 455
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 123/218 (56%), Gaps = 12/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N GN G + T+ G+ I E GLT+Q++A++FFQ NT AE L+ LI C
Sbjct: 242 NYNPDRGNAIFGTQTTTIAGRDYINEKFAGLTYQLAADTFFQINTEAAEALFSLI--CQK 299
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G EI++D +CG GT L LA+ VK V G E ++ A NA+LN+I+N TF+ G
Sbjct: 300 LELKGEEILIDAYCGIGTFTLPLAKRVKEVIGLESYSFSLDRAKINAQLNDITNTTFILG 359
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ K KPDI++ DP R G ++ LL+L++ RIVY+SC AT ARDL Y
Sbjct: 360 AVEKT---LPQLTVKPDIILLDPPRKGCDRSVLDSLLQLQSQRIVYISCQSATLARDLQY 416
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
LC G Y+L +Q D FP TPH+EC L
Sbjct: 417 LCK-------TGDYQLLEVQTADFFPQTPHVECAAFLR 447
>gi|422862228|ref|ZP_16908860.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK408]
gi|327474823|gb|EGF20228.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK408]
Length = 469
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 136/219 (62%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G++ TLYG+ IT+ + G FQI+A +F+Q NT AE LY+ D
Sbjct: 253 MQNINDQPGNAIFGKDWRTLYGQDYITDQMLGNDFQIAAPAFYQVNTEMAEKLYQTAIDF 312
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA++N+I+NA++V
Sbjct: 313 SELTAD--DVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSRKNAEINDITNASYV 370
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ ++ + D+++ DP R G+ IK + ++ +I Y+SCN AT ARD+
Sbjct: 371 CAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIKASISMEPKKITYISCNVATMARDI 430
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 431 K-LYQELG-------YELKKVQPVDLFPQTHHVEAVSLL 461
>gi|352685232|ref|YP_004897217.1| RNA methyltransferase [Acidaminococcus intestini RyC-MR95]
gi|350279887|gb|AEQ23077.1| RNA methyltransferase [Acidaminococcus intestini RyC-MR95]
Length = 463
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N +G +YG I + L LTF IS +SFFQ NT QA+ LY+
Sbjct: 250 VQNVNTRHTNVIMGPHNKVIYGPGVIHDRLGDLTFVISPHSFFQVNTLQAQRLYETALSY 309
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G E V+DL+CGTGTI L LA+ +H G E+V AI+DA +NA+ N+I N+ F+
Sbjct: 310 AAL--EGKENVIDLYCGTGTITLFLAQKARHALGIEIVAPAIADARKNARDNHIKNSEFI 367
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
D K +PD+V+ DP R G ++ +L ++ R+VYVSC PA+ ARD
Sbjct: 368 CADAAKELPLLVRDGIRPDVVVLDPPRAGCERPVLDAILAVRPKRVVYVSCGPASLARDA 427
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
LC +G Y ++ +QPVDMFPHT H+E V L+
Sbjct: 428 AILC--------EGGYNIRQVQPVDMFPHTSHVETVVLM 458
>gi|450061908|ref|ZP_21844032.1| putative RNA methyltransferase [Streptococcus mutans NLML5]
gi|450104861|ref|ZP_21859494.1| putative RNA methyltransferase [Streptococcus mutans SF14]
gi|450176169|ref|ZP_21885623.1| putative RNA methyltransferase [Streptococcus mutans SM1]
gi|449206490|gb|EMC07192.1| putative RNA methyltransferase [Streptococcus mutans NLML5]
gi|449225332|gb|EMC24939.1| putative RNA methyltransferase [Streptococcus mutans SF14]
gi|449245731|gb|EMC44059.1| putative RNA methyltransferase [Streptococcus mutans SM1]
Length = 451
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYVISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLTPDDT--VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ +I Y+SC+PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIKASTAMQPRKITYISCDPATMARDV 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKL +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVALL 448
>gi|450000586|ref|ZP_21825244.1| putative RNA methyltransferase [Streptococcus mutans N29]
gi|449185683|gb|EMB87560.1| putative RNA methyltransferase [Streptococcus mutans N29]
Length = 453
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 127/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLAPDDT--VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ +I Y+SC PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIKASTAMQPRKITYISCAPATMARDV 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L +G YKL +QPVD+FP T H+ECV LL+ S
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVVLLQRS 451
>gi|172058513|ref|YP_001814973.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
gi|171991034|gb|ACB61956.1| RNA methyltransferase, TrmA family [Exiguobacterium sibiricum
255-15]
Length = 454
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 124/218 (56%), Gaps = 10/218 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N N +G+ L+G S I + + GLT++IS +SFFQ N Q E LY + A
Sbjct: 242 QNINPDETNVILGKRNIVLHGPSVIRDQIAGLTYEISPHSFFQVNPLQTEKLYGKALEYA 301
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G EIV+D +CG G+I L+LA+ KHVYG E+VPQAI DA RNAK N I N +F
Sbjct: 302 QL--TGDEIVVDAYCGIGSISLSLAQKAKHVYGIEMVPQAIDDARRNAKANGIDNVSFEY 359
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + KPD+++ DP R G + ++ ++ RIVYVSCN +T ARD
Sbjct: 360 GTAETVMPALVKGGIKPDVIVVDPPRKGCDEEFLRAAAEVAPKRIVYVSCNASTQARDAK 419
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKL + PVDMFPHT H+E V L
Sbjct: 420 LLAE-LG-------YKLMEVTPVDMFPHTTHVESVALF 449
>gi|313123184|ref|YP_004033443.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312279747|gb|ADQ60466.1| tRNA (Uracil-5-)-methyltransferase related enzyme [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
Length = 451
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 124/218 (56%), Gaps = 10/218 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N N N +GE +Y L+GK I + + LTF+IS SFFQ N+ Q LYKL D AG
Sbjct: 239 NHNPKRTNVILGEHDYHLWGKRYIDDKIGDLTFEISPQSFFQINSLQTPRLYKLAIDQAG 298
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L D ++++D + G GTIGL+ A++VK V G EVV A+ DA NA+LN I NA + G
Sbjct: 299 LTKD--DLIVDAYSGIGTIGLSAAKYVKEVRGVEVVKAAVKDAKNNARLNQIHNAKYYAG 356
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
++ + K D++ DP R G+ + I +K ++VY+SCNPAT RD+
Sbjct: 357 KAEELMPKWAAEGLKTDVIFVDPPRKGLTKEFIDAAVKTGPKKVVYISCNPATLVRDMQL 416
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +K Y + PVDMFP TPH+E V +LE
Sbjct: 417 L--------MKAGYTTDLVSPVDMFPQTPHVESVTVLE 446
>gi|119483398|ref|ZP_01618812.1| 23S rRNA methyltransferase/RumA [Lyngbya sp. PCC 8106]
gi|119458165|gb|EAW39287.1| 23S rRNA methyltransferase/RumA [Lyngbya sp. PCC 8106]
Length = 466
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 130/230 (56%), Gaps = 24/230 (10%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N + N G++ + + G+ + E GLTF ++ +FFQ NT AE + K+I+
Sbjct: 246 NINPNQTNVIFGDKTHCVKGQGFLREEFAGLTFNLTPETFFQVNTEAAETVLKVIQQQLN 305
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWV------------KHVYGYEVVPQAISDACRNAK 110
L+ GSE+++D +CG GT+ L +A+ + K V G EV P AI A +NA
Sbjct: 306 LQ--GSEMIIDAYCGIGTLTLPIAKHIQLLASSPEKNSQKQVIGIEVQPSAIQQAYQNAG 363
Query: 111 LNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVS 170
LN I N TF G + K+ F KPDI++ DP R G ++++ LLKL+ +IVY+S
Sbjct: 364 LNGIDNVTFETGTVQKVLSRFSL---KPDIILLDPPRKGCDRQVLESLLKLQPTQIVYMS 420
Query: 171 CNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
C PAT ARDL LC G Y L +QPVD FP TPH+ECV LE
Sbjct: 421 CKPATLARDLKILCEN-------GFYHLTQVQPVDFFPQTPHVECVAFLE 463
>gi|419766780|ref|ZP_14292957.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK579]
gi|383353820|gb|EID31423.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK579]
Length = 453
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 134/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G +QI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDFITDQMLGNDYQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L++D ++ +D + G GTIGL++A+ +K VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKED--DVAIDAYSGIGTIGLSVAKHIKEVYGVEIIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPSLILVDPPRKGLTESFIKASSQTGANRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y+LK +QPVD+FP T H+ECV LL+
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVVLLQ 449
>gi|417917757|ref|ZP_12561316.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis SK236]
gi|342830394|gb|EGU64733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis SK236]
Length = 451
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 129/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E LYG+ IT+ + G +FQIS +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRLLYGQDYITDQMLGNSFQISGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A LR +IV+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA LN ISNA +V
Sbjct: 300 ANLR--AEDIVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASLNGISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P ++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVALL 448
>gi|335031494|ref|ZP_08524926.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
anginosus SK52 = DSM 20563]
gi|333769382|gb|EGL46507.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
anginosus SK52 = DSM 20563]
Length = 543
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 131/218 (60%), Gaps = 10/218 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N GN +G+E LYG+ IT+ + FQI+A +F+Q NT AE LY++ D A
Sbjct: 241 QNINNQPGNAILGKEFRVLYGQDYITDRMLDNDFQIAAPAFYQVNTEMAEKLYQMAIDFA 300
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L + +IV+D + G GTIGL++A+ VK VYG EV+PQA+ ++ +NA+LN ISNA ++
Sbjct: 301 ELSTE--DIVVDAYSGIGTIGLSVAKHVKEVYGVEVIPQAVENSKKNAELNGISNAHYIC 358
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
+ N KP I++ DP R G+ IK + + +IVY+SCN AT ARD+
Sbjct: 359 DSAENAIKKWLNQGIKPSIIMVDPPRKGLTESFIKSSVSMNPKKIVYISCNAATMARDIK 418
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKL +QPVD+FP T H+E V LL
Sbjct: 419 -LYQELG-------YKLTKVQPVDLFPMTHHVETVALL 448
>gi|377556970|ref|ZP_09786639.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
gastricus PS3]
gi|376166809|gb|EHS85690.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lactobacillus
gastricus PS3]
Length = 455
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 125/220 (56%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N+ N +G E +TL+G I + L G+ F IS SF+Q N Q E LY+ D
Sbjct: 243 IQNINSKPTNVVLGRENHTLWGAETIHDQLLGIDFTISPLSFYQVNPQQTERLYQTAIDY 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L DG++ V+D +CG GTI L +A+ K VYG E+V AI DA NA+ N I NA FV
Sbjct: 303 AEL--DGNQTVIDAYCGIGTISLAVAKHAKKVYGVEIVEAAIQDAKLNAQHNQIENAEFV 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + + KPD++I DP R G+ ++I+ ++ +IVY+SCNPAT RDL
Sbjct: 361 VGKAEEQMAKWQAQGLKPDVLIVDPPRKGLDERVIEAAGQMTPQKIVYISCNPATLVRDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
DQ G K +QPVD FP T H+E + LLE
Sbjct: 421 KRFM----DQ---GYRVTKPIQPVDQFPQTTHVESITLLE 453
>gi|295702483|ref|YP_003595558.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium
DSM 319]
gi|294800142|gb|ADF37208.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium
DSM 319]
Length = 457
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 128/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +G + L+G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 246 VQNVNSKRTNVILGNQTNVLWGEEYIYDYIGDVKFAISAKSFYQVNPEQTKVLYDKALEY 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I NA F
Sbjct: 306 ADLT--GEETVIDAYCGIGTISLFLAQKAKKVYGVEIVPEAIEDAKRNAELNGIHNAEFE 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + ++ K D+++ DP R G L+ ++ +K ++VYVSC PAT ARDL
Sbjct: 364 VGEAEVVIPNWYKQGIKADVIVVDPPRKGCDEALLNTIIDMKPKKVVYVSCGPATLARDL 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L KG Y+ +QPVDMFPHT H+E V +L L
Sbjct: 424 AILE--------KGGYETVEVQPVDMFPHTTHVENVAVLTLK 457
>gi|419448670|ref|ZP_13988667.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 4075-00]
gi|379623728|gb|EHZ88361.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 4075-00]
Length = 543
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|338214321|ref|YP_004658382.1| TrmA family RNA methyltransferase [Runella slithyformis DSM 19594]
gi|336308148|gb|AEI51250.1| RNA methyltransferase, TrmA family [Runella slithyformis DSM 19594]
Length = 523
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 133/219 (60%), Gaps = 14/219 (6%)
Query: 4 VNTSVGNTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
+NT GN S ++ LY GK I E + GL F++ SF+QTN+ QA LYK+ + A
Sbjct: 315 INTK-GNDSYYDQTAILYAGKPYIEEQMEGLIFRVGPKSFYQTNSDQAYELYKIAREFAQ 373
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L+ G+E V DL+ GTGTI +AR K V G E VP+AI DA N+ +N I N F G
Sbjct: 374 LK--GNEHVYDLYTGTGTIANFVARQAKAVVGVEYVPEAIEDAKINSAINGIENTRFYAG 431
Query: 123 DL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ N + DF +PD+VI+DP R GM +++ LL ++ +IVYVSCN AT ARDL
Sbjct: 432 DMKNVLNEDFLQQNGRPDVVITDPPRAGMDEPVVRTLLNMEPTKIVYVSCNSATQARDLA 491
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+L D+ Y + ++PVDMFPHT H+E V LLE
Sbjct: 492 WL-----DEK----YSVTRVRPVDMFPHTHHVENVVLLE 521
>gi|222153321|ref|YP_002562498.1| RNA methyltransferase [Streptococcus uberis 0140J]
gi|222114134|emb|CAR42611.1| putative RNA methyltransferase [Streptococcus uberis 0140J]
Length = 453
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 127/220 (57%), Gaps = 12/220 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G + LYG+ I +++ G ++ISA SF+Q NT AE LY+ D
Sbjct: 240 MQNINDQNGNAIFGRDFKVLYGQDYIMDSMLGNDYRISAQSFYQVNTLMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA+ N I NAT+V
Sbjct: 300 SELSKD--DVVIDAYSGIGTIGLSFAKNVKKVYGVEVIEAAVKDAQKNAERNGIRNATYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KP +++ DP R G+ I+ + +K +I YVSCNPAT ARD+
Sbjct: 358 VDSAESAMEKWTKEGIKPSVILVDPPRKGLTESFIEASVAMKPQKITYVSCNPATMARDI 417
Query: 181 D-YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
Y G Y LK +QPVD+FPHT H+ECV L+
Sbjct: 418 KRYQELG---------YDLKKVQPVDLFPHTHHVECVVLM 448
>gi|402834464|ref|ZP_10883066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. CM52]
gi|402278082|gb|EJU27148.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sp. CM52]
Length = 457
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 125/218 (57%), Gaps = 10/218 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+ T N +G E L+GK I + + L F ISA SFFQ NT QA VLY+ + A
Sbjct: 245 QNIQTYRNNVILGRETKLLWGKPTIPDRIGKLHFSISARSFFQVNTEQAAVLYEKALEYA 304
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L +G E V+D +CGTGTI L LA+ V+G E+V AI DA +NA+ N I N F+
Sbjct: 305 DL--NGMETVIDAYCGTGTITLFLAQKAHRVHGIEIVKPAIDDAKKNARDNRIKNTVFLV 362
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
GD K+ + P++++ DP R G ++K + RIVYVSCNPAT ARD+
Sbjct: 363 GDATKLMPRLYHENVHPNVIVVDPPRAGCTETVLKTFAAMHPDRIVYVSCNPATLARDMA 422
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+L +G Y K +QPVDMFP T H+ECV L+
Sbjct: 423 FLA-TLG-------YMAKEIQPVDMFPQTSHVECVVLM 452
>gi|227498264|ref|ZP_03928414.1| RNA methyltransferase [Acidaminococcus sp. D21]
gi|226903726|gb|EEH89644.1| RNA methyltransferase [Acidaminococcus sp. D21]
Length = 460
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 128/219 (58%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVNT N +G +YG I + L LTF IS +SFFQ NT QA+ LY+
Sbjct: 247 VQNVNTRHTNVIMGPHNKVIYGPGVIHDRLGDLTFVISPHSFFQVNTLQAQRLYETALSY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L +G E V+DL+CGTGTI L LA+ +H G E+V AI+DA +NA+ N+I N+ F+
Sbjct: 307 AAL--EGKENVIDLYCGTGTITLFLAQKARHALGIEIVAPAIADARKNARDNHIKNSEFI 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
D K +PD+V+ DP R G ++ +L ++ R+VYVSC PA+ ARD
Sbjct: 365 CADAAKELPLLVRDGIRPDVVVLDPPRAGCERPVLDAILAVRPKRVVYVSCGPASLARDA 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
LC +G Y ++ +QPVDMFPHT H+E V L+
Sbjct: 425 AILC--------EGGYNIRQVQPVDMFPHTSHVETVVLM 455
>gi|418080483|ref|ZP_12717695.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 6735-05]
gi|418105096|ref|ZP_12742154.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44500]
gi|418135088|ref|ZP_12771945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11426]
gi|353753023|gb|EHD33647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 6735-05]
gi|353777161|gb|EHD57634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44500]
gi|353902325|gb|EHE77855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11426]
Length = 505
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|258508017|ref|YP_003170768.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG]
gi|385827700|ref|YP_005865472.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
gi|257147944|emb|CAR86917.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG]
gi|259649345|dbj|BAI41507.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
Length = 455
Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 121/218 (55%), Gaps = 10/218 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N N +G + T+YG+ + + L G FQIS SF+Q N Q EVLY + AG
Sbjct: 244 NLNDKRTNVILGRKSKTIYGRDYLLDKLLGSEFQISPVSFYQVNPIQTEVLYTKAIEAAG 303
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E V+D + G GTI LT+AR K VYG EVV A+ DA NA N+I N TF G
Sbjct: 304 L--TGKETVIDAYSGIGTISLTMARHAKQVYGVEVVESAVHDAEANAARNHIKNVTFEVG 361
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + +A D+++ DP R G+ I + +K P+IVY+SCNPAT ARDL
Sbjct: 362 KAEDVMQKWKDADLPVDVLMVDPPRKGLDKTFIDAVGYMKPPKIVYISCNPATLARDLQL 421
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L G Y K QPVDMFP T HIE V LLE
Sbjct: 422 LA-AFG-------YTAKETQPVDMFPQTQHIESVTLLE 451
>gi|421212875|ref|ZP_15669836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070108]
gi|395580462|gb|EJG40943.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070108]
Length = 505
Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|259047667|ref|ZP_05738068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella
adiacens ATCC 49175]
gi|259035858|gb|EEW37113.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella
adiacens ATCC 49175]
Length = 467
Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 123/220 (55%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+ N +G E L+G+ E L TF+ISA SFFQ NT Q EVLY+ D
Sbjct: 255 VQNIQPKPTNVIMGRETKVLFGEDVYEEKLFEFTFKISARSFFQVNTVQTEVLYQQAIDA 314
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ G E V+D +CG GT+ L AR K VY E+V AI A NAKLN ++N F
Sbjct: 315 ADLK--GGETVVDAYCGIGTMSLAFARDAKKVYAMEIVDDAIVMAKENAKLNGVTNVHFE 372
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G KI + +PD+++ DP R G+ + I+ + RIVYVSCNPAT ARDL
Sbjct: 373 TGAAEKIMPRWKEEGIQPDVIVVDPPRKGLDLAFIEAACATRPERIVYVSCNPATLARDL 432
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+ +G Y+ + +QPVDMFP T HIE V LLE
Sbjct: 433 VHFKE-------RG-YEAQYVQPVDMFPMTAHIEVVGLLE 464
>gi|422878542|ref|ZP_16925008.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1059]
gi|422928392|ref|ZP_16961334.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
ATCC 29667]
gi|422931368|ref|ZP_16964299.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK340]
gi|332366968|gb|EGJ44708.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1059]
gi|339616716|gb|EGQ21357.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
ATCC 29667]
gi|339619668|gb|EGQ24243.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK340]
Length = 469
Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 133/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G++ TLYG+ IT+ + G FQIS +F+Q NT AE LY+ D
Sbjct: 253 MQNINDQPGNAIFGKDWRTLYGQDYITDRMLGNDFQISGPAFYQVNTEMAEKLYQTAIDF 312
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA +N I+NA++V
Sbjct: 313 SELTSD--DVVLDAYSGIGTIGLSVAKQVKQVYGVEVIPEAVENSRKNAAINGITNASYV 370
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ ++ + D+++ DP R G+ IK + +K +I Y+SCN AT ARD+
Sbjct: 371 CAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIKASVSMKPKKITYISCNVATMARDI 430
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 431 K-LYQELG-------YELKKVQPVDLFPQTHHVEAVSLL 461
>gi|430841421|ref|ZP_19459340.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1007]
gi|431071674|ref|ZP_19494645.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1604]
gi|430494197|gb|ELA70447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1007]
gi|430567307|gb|ELB06393.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1604]
Length = 457
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 123/217 (56%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++ LYG+ I + L G T++ISA SF+Q NT QAE LY+ +
Sbjct: 245 IQNINEEKTNVILGDKGKVLYGRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIEF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADRVDKVYGMEVIPEAIEDAQFNALNNKIENVHYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 451
>gi|260887170|ref|ZP_05898433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena
ATCC 35185]
gi|260863232|gb|EEX77732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena
ATCC 35185]
Length = 466
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 123/218 (56%), Gaps = 10/218 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+ T N +G E L+GK I + + L F ISA SFFQ NT QA VLY+ + A
Sbjct: 253 QNIQTYRNNVILGRETKLLWGKPTIPDRIGRLRFSISARSFFQVNTEQAAVLYEKALEYA 312
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G E V+D +CGTGTI L LA+ VYG E+V AI DA +NA+ N+I NA F+
Sbjct: 313 DL--SGKETVIDAYCGTGTITLFLAQKAHRVYGIEIVKPAIEDAKKNARDNHIKNAAFLV 370
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
GD ++ + +P +++ DP R G ++K ++ RIVYVSCNPAT ARDL
Sbjct: 371 GDATELMPRLCHENIRPHVIVVDPPRAGCTETVLKTFAGMRPDRIVYVSCNPATLARDLA 430
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L K Y + +QPVDMFP T H+E V L
Sbjct: 431 ILA--------KLGYSAREIQPVDMFPQTSHVEAVTKL 460
>gi|225861011|ref|YP_002742520.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Taiwan19F-14]
gi|298230452|ref|ZP_06964133.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298255322|ref|ZP_06978908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298502952|ref|YP_003724892.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus
pneumoniae TCH8431/19A]
gi|387788212|ref|YP_006253280.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae ST556]
gi|417696224|ref|ZP_12345403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47368]
gi|418082955|ref|ZP_12720156.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44288]
gi|418085099|ref|ZP_12722283.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47281]
gi|418091522|ref|ZP_12728665.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44452]
gi|418093975|ref|ZP_12731103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA49138]
gi|418119573|ref|ZP_12756525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA18523]
gi|418141711|ref|ZP_12778524.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13455]
gi|418152865|ref|ZP_12789604.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA16121]
gi|418171242|ref|ZP_12807868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19451]
gi|418196063|ref|ZP_12832542.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47688]
gi|418223186|ref|ZP_12849827.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5185-06]
gi|419422895|ref|ZP_13963110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43264]
gi|419427008|ref|ZP_13967191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5652-06]
gi|419429188|ref|ZP_13969355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11856]
gi|419438134|ref|ZP_13978204.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13499]
gi|419444753|ref|ZP_13984768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19923]
gi|419446896|ref|ZP_13986901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 7879-04]
gi|419451370|ref|ZP_13991356.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae EU-NP02]
gi|419488964|ref|ZP_14028714.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44386]
gi|419501785|ref|ZP_14041470.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47628]
gi|419518824|ref|ZP_14058431.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA08825]
gi|419528448|ref|ZP_14067990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17719]
gi|421272690|ref|ZP_15723534.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SPAR55]
gi|421288224|ref|ZP_15738987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58771]
gi|225726771|gb|ACO22622.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Taiwan19F-14]
gi|298238547|gb|ADI69678.1| TrmA family tRNA (uracil-5-)-methyltransferase [Streptococcus
pneumoniae TCH8431/19A]
gi|332201499|gb|EGJ15569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47368]
gi|353756868|gb|EHD37467.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44288]
gi|353758794|gb|EHD39382.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47281]
gi|353765200|gb|EHD45747.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44452]
gi|353765323|gb|EHD45868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA49138]
gi|353789600|gb|EHD69993.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA18523]
gi|353805962|gb|EHD86236.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13455]
gi|353817416|gb|EHD97618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA16121]
gi|353835974|gb|EHE16063.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19451]
gi|353861514|gb|EHE41451.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47688]
gi|353879312|gb|EHE59138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5185-06]
gi|379137954|gb|AFC94745.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae ST556]
gi|379538139|gb|EHZ03320.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13499]
gi|379551136|gb|EHZ16231.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11856]
gi|379564471|gb|EHZ29467.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17719]
gi|379572446|gb|EHZ37403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19923]
gi|379587421|gb|EHZ52269.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43264]
gi|379587857|gb|EHZ52704.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44386]
gi|379601020|gb|EHZ65797.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47628]
gi|379614436|gb|EHZ79146.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 7879-04]
gi|379618461|gb|EHZ83136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5652-06]
gi|379623075|gb|EHZ87709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae EU-NP02]
gi|379641803|gb|EIA06338.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA08825]
gi|395875799|gb|EJG86877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SPAR55]
gi|395886787|gb|EJG97803.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58771]
Length = 543
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|148984983|ref|ZP_01818226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP3-BS71]
gi|387757405|ref|YP_006064384.1| putative RNA methyltransferase [Streptococcus pneumoniae OXC141]
gi|418232095|ref|ZP_12858682.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA07228]
gi|418236535|ref|ZP_12863103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19690]
gi|419479854|ref|ZP_14019661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19101]
gi|419482048|ref|ZP_14021841.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40563]
gi|419499548|ref|ZP_14039245.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47597]
gi|419520954|ref|ZP_14060550.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05245]
gi|421227198|ref|ZP_15683906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2072047]
gi|147922681|gb|EDK73798.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP3-BS71]
gi|301799994|emb|CBW32584.1| putative RNA methyltransferase [Streptococcus pneumoniae OXC141]
gi|353886822|gb|EHE66602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA07228]
gi|353892767|gb|EHE72515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19690]
gi|379539968|gb|EHZ05145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05245]
gi|379571020|gb|EHZ35979.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19101]
gi|379580922|gb|EHZ45811.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40563]
gi|379601318|gb|EHZ66093.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47597]
gi|395596025|gb|EJG56249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2072047]
gi|429316030|emb|CCP35683.1| putative RNA methyltransferase [Streptococcus pneumoniae SPN034156]
gi|429319374|emb|CCP32636.1| putative RNA methyltransferase [Streptococcus pneumoniae SPN034183]
gi|429321190|emb|CCP34610.1| putative RNA methyltransferase [Streptococcus pneumoniae SPN994039]
gi|429323010|emb|CCP30651.1| putative RNA methyltransferase [Streptococcus pneumoniae SPN994038]
Length = 543
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|379727788|ref|YP_005319973.1| TrmA family RNA methyltransferase [Melissococcus plutonius DAT561]
gi|376318691|dbj|BAL62478.1| TrmA family RNA methyltransferase [Melissococcus plutonius DAT561]
Length = 460
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 125/220 (56%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +GEE LYG I + L G + ISA SF+Q NT Q E LYK +
Sbjct: 244 IQNINPDKTNVIMGEESILLYGNPYINDQLLGKNYHISAASFYQVNTEQTEYLYKTAIEF 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L ++ V+D +CG GTI L+LA VKHVYG E++ AI DA NA +N I N TF
Sbjct: 304 AEL--SPTDQVVDAYCGIGTIALSLAEQVKHVYGVEIIEAAILDARENAAINQIENCTFK 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ D+ A P+I+ DP R G+ I+ ++ RI+Y+SCNPAT ARDL
Sbjct: 362 IGKAEEVMIDWQKAGISPNIIFVDPPRKGLTESFIETCTEMDPNRIIYISCNPATLARDL 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
+G Y+ + +QPVD+FP T H+E V LL+
Sbjct: 422 KLFAE-LG-------YETRKIQPVDLFPQTYHVETVALLQ 453
>gi|333372378|ref|ZP_08464307.1| 23S rRNA (uracil-5-)-methyltransferase [Desmospora sp. 8437]
gi|332974302|gb|EGK11234.1| 23S rRNA (uracil-5-)-methyltransferase [Desmospora sp. 8437]
Length = 465
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+ N +G+E L+G+ I + + + F IS +SFFQ N Q EVLY+ +
Sbjct: 246 IQNIQPHRTNVVLGKESRVLWGEPVIHDRIGHVRFAISPHSFFQVNPVQTEVLYEQVRRM 305
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G EI++D +CG GTIGL LA+ V G E +PQA+ DA NA+LN I +A+F
Sbjct: 306 AAL--TGEEIIIDAYCGIGTIGLYLAKEAARVLGVESIPQAVEDARHNAELNGIDHASFE 363
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + +PD++I DP R G +L+ +++ R+VYVSCNPAT ARD
Sbjct: 364 AGPAEEVMPRWAREGIRPDVMIVDPPRKGCAPELLDAAVRMSPDRLVYVSCNPATLARDA 423
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
YL ++ C +QPVDMFPHT H+ECV +
Sbjct: 424 AYL----KERGYTNC----QVQPVDMFPHTSHVECVTVF 454
>gi|225856683|ref|YP_002738194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae P1031]
gi|225725093|gb|ACO20945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae P1031]
Length = 543
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|417933850|ref|ZP_12577170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
bv. 2 str. F0392]
gi|340770420|gb|EGR92935.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
bv. 2 str. F0392]
Length = 453
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 132/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLY + IT+ + G FQIS +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWKTLYVQDYITDQMLGNDFQISGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L++D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA LNNI+NA +V
Sbjct: 300 AELKED--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASLNNITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P ++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y+LK +QPVD+FP T H+ECV LL+
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVVLLQ 449
>gi|330839061|ref|YP_004413641.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC
35185]
gi|329746825|gb|AEC00182.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC
35185]
Length = 458
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 123/218 (56%), Gaps = 10/218 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+ T N +G E L+GK I + + L F ISA SFFQ NT QA VLY+ + A
Sbjct: 245 QNIQTYRNNVILGRETKLLWGKPTIPDRIGRLRFSISARSFFQVNTEQAAVLYEKALEYA 304
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
L G E V+D +CGTGTI L LA+ VYG E+V AI DA +NA+ N+I NA F+
Sbjct: 305 DL--SGKETVIDAYCGTGTITLFLAQKAHRVYGIEIVKPAIEDAKKNARDNHIKNAAFLV 362
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
GD ++ + +P +++ DP R G ++K ++ RIVYVSCNPAT ARDL
Sbjct: 363 GDATELMPRLCHENIRPHVIVVDPPRAGCTETVLKTFAGMRPDRIVYVSCNPATLARDLA 422
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L K Y + +QPVDMFP T H+E V L
Sbjct: 423 ILA--------KLGYSAREIQPVDMFPQTSHVEAVTKL 452
>gi|414158453|ref|ZP_11414747.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
F0441]
gi|410870998|gb|EKS18955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus sp.
F0441]
Length = 451
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 130/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNNFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA LNNI+NA +V
Sbjct: 300 AELKAD--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNAALNNITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYKEFG-------YDLKKVQPVDLFPQTHHVECVALL 448
>gi|409197886|ref|ZP_11226549.1| RNA methyltransferase [Marinilabilia salmonicolor JCM 21150]
Length = 469
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 127/213 (59%), Gaps = 13/213 (6%)
Query: 10 NTSVGEEEYTLY-GKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGS 68
N ++ ++E L G+ +I E + GL F+I SF+QTN+ QA LYK+ D AGL G
Sbjct: 266 NDTITDQEVVLQDGRDHIFEEMEGLKFKIGPKSFYQTNSEQAYNLYKVARDFAGL--TGE 323
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK-I 127
E V DL+ GTGTI +A K V G E VP+AI DA N+++NNI N F GD+ +
Sbjct: 324 ETVYDLYTGTGTIANFVAGNAKKVVGIEYVPEAIEDAHINSEINNIQNTRFFAGDMKDLL 383
Query: 128 GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 187
D PD++I+DP R GMH +++ +L +IVYVSCN AT ARD++ L
Sbjct: 384 NHDLFEKEGFPDVIITDPPRAGMHEDVVRTILNAAPEKIVYVSCNSATQARDINIL---- 439
Query: 188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
Y++ ++QPVDMFPHT H+E V LLE
Sbjct: 440 -----DARYRVTAIQPVDMFPHTHHVENVALLE 467
>gi|168487479|ref|ZP_02711987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC1087-00]
gi|419510654|ref|ZP_14050297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP141]
gi|419530333|ref|ZP_14069862.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40028]
gi|421215259|ref|ZP_15672187.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070109]
gi|183569696|gb|EDT90224.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC1087-00]
gi|379573852|gb|EHZ38799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40028]
gi|379632707|gb|EHZ97279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP141]
gi|395581392|gb|EJG41864.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070109]
Length = 543
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|418146248|ref|ZP_12783030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13637]
gi|353815044|gb|EHD95266.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13637]
Length = 543
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVEMVALL 448
>gi|225854529|ref|YP_002736041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae JJA]
gi|421236169|ref|ZP_15692770.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2071004]
gi|444388298|ref|ZP_21186285.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS125219]
gi|444389840|ref|ZP_21187755.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS70012]
gi|444392417|ref|ZP_21190148.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS81218]
gi|444395466|ref|ZP_21193010.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0002]
gi|444397488|ref|ZP_21194971.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0006]
gi|444400665|ref|ZP_21198047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0007]
gi|444408703|ref|ZP_21205336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0010]
gi|444410353|ref|ZP_21206893.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0076]
gi|444413203|ref|ZP_21209519.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0153]
gi|444417332|ref|ZP_21213377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0360]
gi|225722765|gb|ACO18618.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae JJA]
gi|395605088|gb|EJG65220.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2071004]
gi|444249912|gb|ELU56397.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS125219]
gi|444256303|gb|ELU62641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS70012]
gi|444258109|gb|ELU64439.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0002]
gi|444260145|gb|ELU66453.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0006]
gi|444263466|gb|ELU69634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PCS81218]
gi|444265636|gb|ELU71633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0007]
gi|444269530|gb|ELU75337.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0010]
gi|444273362|gb|ELU79035.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0153]
gi|444277787|gb|ELU83284.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0076]
gi|444283983|gb|ELU89151.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae PNI0360]
Length = 543
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|149012968|ref|ZP_01833857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP19-BS75]
gi|169832868|ref|YP_001694472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Hungary19A-6]
gi|303255584|ref|ZP_07341635.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS455]
gi|303260473|ref|ZP_07346441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP-BS293]
gi|303262830|ref|ZP_07348767.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP14-BS292]
gi|303265300|ref|ZP_07351210.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS397]
gi|303266507|ref|ZP_07352394.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS457]
gi|303268374|ref|ZP_07354170.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS458]
gi|387759273|ref|YP_006066251.1| putative RNA methyltransferase [Streptococcus pneumoniae INV200]
gi|410476563|ref|YP_006743322.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae gamPNI0373]
gi|418139380|ref|ZP_12776210.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13338]
gi|418180201|ref|ZP_12816773.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41688]
gi|419514583|ref|ZP_14054210.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae England14-9]
gi|421295979|ref|ZP_15746691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58581]
gi|147763121|gb|EDK70062.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP19-BS75]
gi|168995370|gb|ACA35982.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Hungary19A-6]
gi|301801862|emb|CBW34580.1| putative RNA methyltransferase [Streptococcus pneumoniae INV200]
gi|302597440|gb|EFL64535.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS455]
gi|302636028|gb|EFL66526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP14-BS292]
gi|302638385|gb|EFL68852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP-BS293]
gi|302642095|gb|EFL72446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS458]
gi|302643958|gb|EFL74218.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS457]
gi|302645165|gb|EFL75402.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae BS397]
gi|353846167|gb|EHE26202.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41688]
gi|353905623|gb|EHE81046.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13338]
gi|379637679|gb|EIA02232.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae England14-9]
gi|395897192|gb|EJH08156.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58581]
gi|406369508|gb|AFS43198.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae gamPNI0373]
Length = 543
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|148994234|ref|ZP_01823527.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP9-BS68]
gi|168488850|ref|ZP_02713049.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP195]
gi|168576242|ref|ZP_02722136.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae MLV-016]
gi|417678981|ref|ZP_12328378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17570]
gi|418125652|ref|ZP_12762562.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44511]
gi|418148452|ref|ZP_12785217.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13856]
gi|418191572|ref|ZP_12828076.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47388]
gi|419470979|ref|ZP_14010838.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA07914]
gi|419484109|ref|ZP_14023885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43257]
gi|421220174|ref|ZP_15677023.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070425]
gi|421223482|ref|ZP_15680259.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070531]
gi|421238764|ref|ZP_15695331.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2071247]
gi|421244846|ref|ZP_15701347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2081685]
gi|421278800|ref|ZP_15729608.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17301]
gi|421294278|ref|ZP_15745001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA56113]
gi|421300891|ref|ZP_15751561.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19998]
gi|147927375|gb|EDK78406.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP9-BS68]
gi|183572483|gb|EDT93011.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP195]
gi|183577973|gb|EDT98501.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae MLV-016]
gi|332073360|gb|EGI83839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17570]
gi|353797618|gb|EHD77951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44511]
gi|353813127|gb|EHD93360.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA13856]
gi|353857473|gb|EHE37436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47388]
gi|379545695|gb|EHZ10834.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA07914]
gi|379583620|gb|EHZ48497.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43257]
gi|395585941|gb|EJG46319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070531]
gi|395588178|gb|EJG48511.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070425]
gi|395602027|gb|EJG62172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2071247]
gi|395609346|gb|EJG69433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2081685]
gi|395880233|gb|EJG91286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17301]
gi|395894568|gb|EJH05548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA56113]
gi|395898451|gb|EJH09395.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA19998]
Length = 543
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|379011742|ref|YP_005269554.1| tRNA (uracil-5-)-methyltransferase [Acetobacterium woodii DSM 1030]
gi|375302531|gb|AFA48665.1| tRNA (uracil-5-)-methyltransferase [Acetobacterium woodii DSM 1030]
Length = 454
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 126/218 (57%), Gaps = 11/218 (5%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N GN +G++ ++G + + E + L+F IS NSFFQ N+ Q LY I+D A
Sbjct: 243 NINREKGNVILGKKSLCVHGAARLVEKIGDLSFSISPNSFFQVNSKQTVKLYDKIKDLAA 302
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E + DL+CGTGTIGL LA K V G E V A+ DA NA LN I NATF QG
Sbjct: 303 L--TGTETIFDLYCGTGTIGLYLANKAKKVVGIESVGDAVLDARENAGLNQIENATFYQG 360
Query: 123 DL-NKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
+ ++ KPD++I DP R G L+ + ++ PRI+YVSCNPAT +RD+
Sbjct: 361 RVEEEMMRIIKEEALKPDLIILDPPRKGCEESLLSTINNMQTPRIIYVSCNPATLSRDMK 420
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ + Y + +QP+D+FP T H+E V L+
Sbjct: 421 IMT--------ESGYTINEIQPIDLFPGTGHVETVVLM 450
>gi|22536806|ref|NP_687657.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
gi|25010677|ref|NP_735072.1| hypothetical protein gbs0613 [Streptococcus agalactiae NEM316]
gi|76788448|ref|YP_329346.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae A909]
gi|76799166|ref|ZP_00781348.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae 18RS21]
gi|77407748|ref|ZP_00784502.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1]
gi|406709096|ref|YP_006763822.1| RNA methyltransferase [Streptococcus agalactiae GD201008-001]
gi|424049832|ref|ZP_17787383.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae ZQ0910]
gi|50401576|sp|Q8E0T7.1|Y633_STRA5 RecName: Full=Uncharacterized RNA methyltransferase SAG0633
gi|50401578|sp|Q8E6F5.1|Y613_STRA3 RecName: Full=Uncharacterized RNA methyltransferase gbs0613
gi|22533652|gb|AAM99529.1|AE014220_1 RNA methyltransferase, TrmA family [Streptococcus agalactiae
2603V/R]
gi|23095031|emb|CAD46257.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563505|gb|ABA46089.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae A909]
gi|76585475|gb|EAO62051.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae 18RS21]
gi|77173614|gb|EAO76729.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae COH1]
gi|389648675|gb|EIM70169.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae ZQ0910]
gi|406649981|gb|AFS45382.1| RNA methyltransferase [Streptococcus agalactiae GD201008-001]
Length = 451
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG I + + G T+ ISA SF+Q NT AE LY+ D
Sbjct: 240 MQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L + +IV+D + G GTIGL++A+ VKHVYG EVV +A+SDA NA N I+N+T+V
Sbjct: 300 SDL--NSEDIVIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KP +++ DP R G+ + + KA +I Y+SCN AT ARD+
Sbjct: 358 ADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y L +QPVD+FP T H+ECV LL
Sbjct: 418 K-LFEELG-------YHLVKIQPVDLFPMTHHVECVALL 448
>gi|387879386|ref|YP_006309689.1| RNA methyltransferase, TrmA family protein [Streptococcus
parasanguinis FW213]
gi|386792840|gb|AFJ25875.1| RNA methyltransferase, TrmA family protein [Streptococcus
parasanguinis FW213]
Length = 455
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G +FQIS +F+Q NT AE LY+ D
Sbjct: 243 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNSFQISGPAFYQVNTEMAEKLYQTAIDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+++ ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA LN I+NA +V
Sbjct: 303 AELKEE--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVKNSQKNASLNGITNAHYV 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P ++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 361 CDTAENAMKNWLKEGIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 421 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLL 451
>gi|419508095|ref|ZP_14047748.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA49542]
gi|379611813|gb|EHZ76535.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA49542]
Length = 543
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|418199915|ref|ZP_12836360.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47976]
gi|353864962|gb|EHE44871.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47976]
Length = 543
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|77411137|ref|ZP_00787490.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
CJB111]
gi|77162860|gb|EAO73818.1| RNA methyltransferase, TrmA family [Streptococcus agalactiae
CJB111]
Length = 451
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG I + + G T+ ISA SF+Q NT AE LY+ D
Sbjct: 240 MQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L + +IV+D + G GTIGL++A+ VKHVYG EVV +A+SDA NA N I+N+T+V
Sbjct: 300 SDL--NSEDIVIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KP +++ DP R G+ + + KA +I Y+SCN AT ARD+
Sbjct: 358 ADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y L +QPVD+FP T H+ECV LL
Sbjct: 418 K-LFEELG-------YHLVKIQPVDLFPMTHHVECVALL 448
>gi|444419486|ref|ZP_21215345.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Streptococcus
pneumoniae PNI0427]
gi|444286715|gb|ELU91678.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Streptococcus
pneumoniae PNI0427]
Length = 454
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|419799184|ref|ZP_14324548.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis F0449]
gi|385698514|gb|EIG28870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
parasanguinis F0449]
Length = 452
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G +FQIS +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNSFQISGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L ++ ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA LN I+NA +V
Sbjct: 300 AELSEE--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASLNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTVILVDPPRKGLTESFIKASAQTGANRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLL 448
>gi|187932429|ref|YP_001884796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B str. Eklund 17B]
gi|187720582|gb|ACD21803.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B str. Eklund 17B]
Length = 450
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 127/219 (57%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ N S + + E+ LYG+ I E L GL F+IS SFFQTNT AE LY L+ D
Sbjct: 243 LHTENNSFSDAVIPEKVNVLYGRDYIQEKLLGLDFKISPFSFFQTNTKGAESLYSLVRDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G ++ ++V DL+CGTGTIG +A K V G E++ +A+ A NAKLN ++N F+
Sbjct: 303 MGSSEN--KVVFDLYCGTGTIGQIVAPNAKKVVGIELIEEAVEAAKENAKLNGLNNCEFL 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ +I KPDI+I DP R G+H K + +++K AP IVYVSCNP T DL
Sbjct: 361 AGDVAEI---IKTVKDKPDIIILDPPRSGVHPKALDYVIKFNAPEIVYVSCNPKTLVTDL 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L I+ YK+ Q DMFP+TPH E + L
Sbjct: 418 KVL--------IERGYKIIQTQVKDMFPNTPHAETIVKL 448
>gi|450143835|ref|ZP_21873667.1| putative RNA methyltransferase [Streptococcus mutans 1ID3]
gi|450160752|ref|ZP_21880180.1| putative RNA methyltransferase [Streptococcus mutans 66-2A]
gi|449151553|gb|EMB55285.1| putative RNA methyltransferase [Streptococcus mutans 1ID3]
gi|449239696|gb|EMC38407.1| putative RNA methyltransferase [Streptococcus mutans 66-2A]
Length = 451
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY++ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQIAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLAPDDT--VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ I+ ++ +I Y+SC+PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIEASTAMQPRKITYISCDPATMARDV 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKL +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVALL 448
>gi|419468894|ref|ZP_14008765.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA06083]
gi|421309464|ref|ZP_15760091.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA62681]
gi|379546997|gb|EHZ12135.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA06083]
gi|395910885|gb|EJH21754.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA62681]
Length = 543
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|374322253|ref|YP_005075382.1| RNA methyltransferase, trma family protein [Paenibacillus terrae
HPL-003]
gi|357201262|gb|AET59159.1| RNA methyltransferase, trma family protein [Paenibacillus terrae
HPL-003]
Length = 558
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 124/218 (56%), Gaps = 10/218 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
NVNT N G+E L+G+ I + + + F ISA SF+Q N Q EVLY + A
Sbjct: 345 QNVNTKRTNVIFGDETRVLWGRDVIYDYIGNVQFAISARSFYQVNPVQTEVLYSKTVEYA 404
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G E V+D +CG GTI L LA+ VYG E+V +AI DA NA LNN+ N F
Sbjct: 405 GL--TGKETVIDAYCGIGTISLFLAQHADQVYGVEIVKEAIEDARSNALLNNMRNVKFEV 462
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G + + DI++ DP R G +L++ +L++K R+VYVSCNP+T ARDL
Sbjct: 463 GASEDVIPAWKEQGITADIIVVDPPRKGCDPRLLETILEMKPERVVYVSCNPSTLARDLR 522
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L + G Y +QPVDMFPHT H+ECV ++
Sbjct: 523 ILEN--------GGYSTVEVQPVDMFPHTVHVECVVVI 552
>gi|160878319|ref|YP_001557287.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
gi|160426985|gb|ABX40548.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans
ISDg]
Length = 468
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 132/225 (58%), Gaps = 23/225 (10%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N NT N +GEE LYG + IT+ + + +QIS SF+Q N Q + LY+L D
Sbjct: 253 NKNTKKTNVILGEEIIPLYGPTYITDYIGDIKYQISPLSFYQVNPVQTKKLYELALDYTD 312
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+V DL+CG GTI L LA+ K VYG E++PQAI DA NAKLN+I+NA F G
Sbjct: 313 L--TGNELVWDLYCGIGTISLFLAQKAKMVYGVEIIPQAIEDAKSNAKLNDINNAEFFVG 370
Query: 123 DLNKI--------GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPA 174
++ GG D+++ DP R G L++ ++ ++ RIVYVSC+PA
Sbjct: 371 AAEEVLPKQYQLSGGKI-----YADVIVVDPPRKGCDESLLETIVAMEPKRIVYVSCDPA 425
Query: 175 TCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
T ARDL YL I+ Y LK ++PVD FPH+ H+E V LL
Sbjct: 426 TLARDLKYL--------IEHGYDLKKVRPVDQFPHSVHVESVTLL 462
>gi|168494457|ref|ZP_02718600.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC3059-06]
gi|417686524|ref|ZP_12335801.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41301]
gi|418073814|ref|ZP_12711072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11184]
gi|418078519|ref|ZP_12715742.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 4027-06]
gi|418089422|ref|ZP_12726579.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43265]
gi|418098397|ref|ZP_12735496.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 6901-05]
gi|418114525|ref|ZP_12751515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5787-06]
gi|418173401|ref|ZP_12810015.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41277]
gi|418178064|ref|ZP_12814648.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41565]
gi|418182767|ref|ZP_12819327.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43380]
gi|418216478|ref|ZP_12843202.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Netherlands15B-37]
gi|419433515|ref|ZP_13973633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40183]
gi|419440307|ref|ZP_13980358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40410]
gi|419464137|ref|ZP_14004030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04175]
gi|421249324|ref|ZP_15705785.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2082239]
gi|421281012|ref|ZP_15731810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04672]
gi|183575617|gb|EDT96145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC3059-06]
gi|332075376|gb|EGI85845.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41301]
gi|353747710|gb|EHD28366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 4027-06]
gi|353750661|gb|EHD31299.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11184]
gi|353762108|gb|EHD42671.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43265]
gi|353769757|gb|EHD50273.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 6901-05]
gi|353787267|gb|EHD67674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5787-06]
gi|353840100|gb|EHE20174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41277]
gi|353844838|gb|EHE24881.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41565]
gi|353848908|gb|EHE28918.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43380]
gi|353873529|gb|EHE53390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Netherlands15B-37]
gi|379539356|gb|EHZ04535.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04175]
gi|379576516|gb|EHZ41440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40183]
gi|379579739|gb|EHZ44638.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40410]
gi|395614436|gb|EJG74456.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2082239]
gi|395882173|gb|EJG93220.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04672]
Length = 543
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|419495426|ref|ZP_14035144.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47461]
gi|421303240|ref|ZP_15753904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17484]
gi|379595508|gb|EHZ60316.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47461]
gi|395901862|gb|EJH12798.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17484]
Length = 543
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|419534498|ref|ZP_14074001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17457]
gi|379565232|gb|EHZ30225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17457]
Length = 501
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 198 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 257
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 258 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 315
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 316 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 375
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 376 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 406
>gi|83590746|ref|YP_430755.1| RNA methyltransferase [Moorella thermoacetica ATCC 39073]
gi|83573660|gb|ABC20212.1| 23S rRNA m(5)U-1939 methyltransferase [Moorella thermoacetica ATCC
39073]
Length = 473
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 122/207 (58%), Gaps = 10/207 (4%)
Query: 13 VGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVL 72
+G +TLYG+ + E L L F ISA +FFQ N+ QAEVLY AGL+ G E VL
Sbjct: 269 LGGRPFTLYGRDYLEERLGDLRFYISATTFFQVNSAQAEVLYNKAATFAGLQ--GGEEVL 326
Query: 73 DLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG 132
D +CG+G I L L+R V G EVVP+AI DA RN+ LNN++N F G +
Sbjct: 327 DAYCGSGAIALWLSRQAGRVEGVEVVPEAIVDARRNSILNNLANVHFRTGAAEAVLPRLA 386
Query: 133 NAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNI 192
+P+++I DP R G +++ + ++ R+VY+SCNP+T ARDL +L
Sbjct: 387 GKGYRPEVIILDPPRAGCDRRVLAAVATMEPRRVVYISCNPSTLARDLAHL--------R 438
Query: 193 KGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ +K +QPVDMFPHT H+EC C L
Sbjct: 439 EAGFKPGPVQPVDMFPHTHHVECCCFL 465
>gi|444403315|ref|ZP_21200419.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Streptococcus
pneumoniae PNI0008]
gi|444264699|gb|ELU70756.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Streptococcus
pneumoniae PNI0008]
Length = 460
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|313114891|ref|ZP_07800389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622768|gb|EFQ06225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 461
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN + +G+ E LYGK I +TL G T+ IS SF+Q N Q EVLY L D
Sbjct: 158 VQNVNDRKTSVVLGDMEKVLYGKGFILDTLCGKTYAISPRSFYQINHTQTEVLYGLAVDA 217
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E+VLD +CG GTIGLT A K V G EV +A+ DA NAK N + NA F
Sbjct: 218 AHL--TGKEVVLDAYCGIGTIGLTAADHAKQVVGVEVNREAVHDAIGNAKHNGVKNARFF 275
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
D + G+ A + D++ DP R G + I + ++ R+VYVSCNPAT ARDL
Sbjct: 276 AADATQWIGEAAAAGERADVIFMDPPREGSTPQFIDSVARMAPKRVVYVSCNPATLARDL 335
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ L KG YK++S PVDMFPH+ HIE VC L
Sbjct: 336 ELLTR-------KG-YKVESSTPVDMFPHSEHIETVCAL 366
>gi|419497212|ref|ZP_14036922.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47522]
gi|379601205|gb|EHZ65981.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47522]
Length = 543
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|313884344|ref|ZP_07818106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620422|gb|EFR31849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eremococcus coleocola
ACS-139-V-Col8]
Length = 456
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 123/217 (56%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
N+N S GN +G +E L+G++ + + GL F+IS SF+Q NT QAE LY+L A
Sbjct: 246 NINRSKGNAILGRQEKVLWGQATYHDQMLGLDFEISGQSFYQVNTPQAEELYRLALAAAD 305
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G E VLD +CG GTI L LA+ K VY E+VPQAI A NA+ N ++N F G
Sbjct: 306 LH--GHERVLDAYCGIGTISLALAQQAKEVYAMEIVPQAIEMAKFNAQANALTNVHFEAG 363
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
I + D+ + DP R G+ + L+ L +IVYVSCNPATCARD
Sbjct: 364 KAEVILPKWQEQGLDFDVAVVDPPRKGLDRTFVDTLIDLNPGKIVYVSCNPATCARDCAI 423
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ Y++K+++PVDMFP T H+E + L+
Sbjct: 424 FA--------EAGYEVKTIKPVDMFPQTVHVEALVLM 452
>gi|419493306|ref|ZP_14033032.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47210]
gi|379593481|gb|EHZ58293.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47210]
Length = 543
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 133/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G +QI+ ++F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDYQIAGSAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 KF-YQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|15902976|ref|NP_358526.1| hypothetical protein spr0932 [Streptococcus pneumoniae R6]
gi|116515807|ref|YP_816392.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae D39]
gi|149019625|ref|ZP_01834944.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP23-BS72]
gi|168483100|ref|ZP_02708052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC1873-00]
gi|418175846|ref|ZP_12812443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41437]
gi|418238600|ref|ZP_12865155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|419475421|ref|ZP_14015261.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA14688]
gi|419525776|ref|ZP_14065339.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA14373]
gi|421208849|ref|ZP_15665870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070005]
gi|421224898|ref|ZP_15681641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070768]
gi|421240585|ref|ZP_15697131.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2080913]
gi|50401573|sp|Q8DPY7.1|Y932_STRR6 RecName: Full=Uncharacterized RNA methyltransferase spr0932
gi|15458541|gb|AAK99736.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076383|gb|ABJ54103.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae D39]
gi|147931000|gb|EDK81980.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP23-BS72]
gi|172043444|gb|EDT51490.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC1873-00]
gi|353842414|gb|EHE22461.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41437]
gi|353894350|gb|EHE74092.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NorthCarolina6A-23]
gi|379558469|gb|EHZ23503.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA14373]
gi|379560966|gb|EHZ25987.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA14688]
gi|395575187|gb|EJG35757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070005]
gi|395590376|gb|EJG50683.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2070768]
gi|395608376|gb|EJG68470.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2080913]
Length = 543
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGLAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|384049008|ref|YP_005497025.1| TrmA family RNA methyltransferase [Bacillus megaterium WSH-002]
gi|345446699|gb|AEN91716.1| RNA methyltransferase, TrmA family [Bacillus megaterium WSH-002]
Length = 461
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 131/222 (59%), Gaps = 11/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN + G+E +TL GKS I ETL ++F++SA +FFQ N Q LY ++
Sbjct: 250 VQNVNGQKTSLIFGDETFTLSGKSVIQETLGDISFELSARAFFQLNPLQTVKLYDEVKKA 309
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L GSE ++D +CG GTIGL LA+ K + G + + ++I DA +NAK + +AT+V
Sbjct: 310 AAL--TGSEKIVDAYCGVGTIGLWLAKDAKEIRGMDTIEESIVDARKNAKDHGFEHATYV 367
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K + KPD+V+ DP R G KL+K +L++K ++VYVSCNP+T A+D+
Sbjct: 368 TGPAEKWMPQWVKEGWKPDVVVVDPPRTGCDDKLLKTILQVKPKKVVYVSCNPSTLAKDV 427
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
Q + Y + +QPVDMFPHT H+E V L L
Sbjct: 428 ---------QQLSKAYHVDYIQPVDMFPHTAHVENVVSLTLK 460
>gi|150391401|ref|YP_001321450.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
gi|149951263|gb|ABR49791.1| RNA methyltransferase, TrmA family [Alkaliphilus metalliredigens
QYMF]
Length = 451
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 131/220 (59%), Gaps = 15/220 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ N ++ + + L G+ +E L GL F+ISA SFFQTN+ AE LY ++ D
Sbjct: 244 LHTFNDNLADMVQSDRTDVLIGQDYFSEELLGLRFKISAFSFFQTNSLGAEKLYSIVRDF 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G DD ++V DL+CGTGTIG +A+ K V G E+V A++ A NAKLN ++N F+
Sbjct: 304 VGQADD--QVVFDLYCGTGTIGQIVAQKAKKVIGIEIVEDAVTAANENAKLNGLTNCHFI 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K + + KPDI+I DP R G+H ++ ++ +IVYVSCNP + +DL
Sbjct: 362 AGDVKKKIKELND---KPDIIILDPPRAGIHAAALQDIIDFNTEKIVYVSCNPKSMVKDL 418
Query: 181 DYL-CHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L HG Y++K ++ +DMFPHTPH+E V LL
Sbjct: 419 AMLEAHG---------YQVKKVKCMDMFPHTPHVEAVTLL 449
>gi|418968126|ref|ZP_13519753.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK616]
gi|383341252|gb|EID19516.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK616]
Length = 453
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 132/220 (60%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G +QI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNDYQIAGPAFYQVNTEMAEKLYQTTIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L++D ++ +D + G GTIGL++A+ +K VYG EV+P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKED--DVAIDAYSGIGTIGLSVAKHIKEVYGVEVIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ +P +++ DP R G+ IK + A RI Y+SCN T ARD+
Sbjct: 358 CDTAENAMKTWLKEGIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVTTMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y+LK +QPVD+FP T H+ECV LL+
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVVLLQ 449
>gi|254977015|ref|ZP_05273487.1| putative RNA methyltransferase [Clostridium difficile QCD-66c26]
gi|255651934|ref|ZP_05398836.1| putative RNA methyltransferase [Clostridium difficile QCD-37x79]
gi|306521684|ref|ZP_07408031.1| putative RNA methyltransferase [Clostridium difficile QCD-32g58]
Length = 544
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVN N +G E +YG I + + L F+IS SFFQ N Q +VLY + A
Sbjct: 243 NVNQKDTNAILGRENIVIYGDGKINDYIGDLVFEISPLSFFQVNPVQTKVLYDKALEYAN 302
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L D ++ V D++CG GTI L LA+ K VYG E++ AI DA NAKLNNI NA F G
Sbjct: 303 LND--TDTVFDIYCGIGTISLFLAQKAKKVYGIEIIDDAIKDAKINAKLNNIHNAEFYVG 360
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+I ++V+ DP R G K+++ ++ + RIVYVSCNP+T ARDLDY
Sbjct: 361 KAEEIVPKMYREGKTANVVVVDPPRKGCDEKVLETIVSMNPERIVYVSCNPSTLARDLDY 420
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L N+ G +K QPVDMFPH+ H+E V LL
Sbjct: 421 L-------NVHG-FKCVEAQPVDMFPHSTHVETVALL 449
>gi|293571847|ref|ZP_06682863.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E980]
gi|431737557|ref|ZP_19526510.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1972]
gi|291608101|gb|EFF37407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E980]
gi|430598644|gb|ELB36379.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Enterococcus faecium
E1972]
Length = 457
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 122/217 (56%), Gaps = 10/217 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N +G++E LY + I + L G T++ISA SF+Q NT QAE LY+
Sbjct: 245 IQNINEEKTNVILGDKEKVLYDRDYIEDQLLGKTYRISAKSFYQVNTQQAEYLYQTAIKF 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D +IV+D + G GTIGL+LA V VYG EV+P+AI DA NA N I N +
Sbjct: 305 AEL--DKKDIVIDAYSGIGTIGLSLADKVDKVYGMEVIPEAIEDAQFNALNNKIENVYYE 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ + KP +++ DP R G+ I+ +++ RIVY+SCNPAT ARD
Sbjct: 363 VGKAEKVMKKWQEKGIKPSVIVVDPPRKGLDHHFIESAIEMSPERIVYISCNPATFARDA 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVC 217
+ Y +K +QPVD+FP T HIE V
Sbjct: 423 KLFA--------EAGYAVKKVQPVDLFPQTHHIELVA 451
>gi|421838985|ref|ZP_16272678.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Clostridium
botulinum CFSAN001627]
gi|409736425|gb|EKN37839.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Clostridium
botulinum CFSAN001627]
Length = 440
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 129/211 (61%), Gaps = 13/211 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N ++ + ++ LYG+ I E L GL F+I+ +FFQTN+ AE LY +++D
Sbjct: 243 LHTINDTLSDVVQVDKLEILYGRDYIIEELLGLKFKIAPEAFFQTNSKGAEKLYSIVKDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D S++V DL+CGTGTIG +A K V G E++ +A+ A NAKLN ++N F+
Sbjct: 303 LG--DASSKVVFDLYCGTGTIGQIVAPRAKKVIGVELIEEAVKAANENAKLNGLNNCEFI 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ D KPDI+I DP RPG+H +++++K + I+YVSCNP T DL
Sbjct: 361 AGDVAKVIKDVKQ---KPDIIILDPPRPGVHPVALEYVVKFEPKEIIYVSCNPKTLVDDL 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTP 211
YL I YKL+ ++ +DMFPHTP
Sbjct: 418 KYL--------IDNGYKLEKVKGMDMFPHTP 440
>gi|385263795|ref|ZP_10041882.1| RNA methyltransferase, TrmA family protein [Bacillus sp. 5B6]
gi|385148291|gb|EIF12228.1| RNA methyltransferase, TrmA family protein [Bacillus sp. 5B6]
Length = 462
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N + N G E ++G+ I + + + F ISA SF+Q N Q +VLY +
Sbjct: 247 VQNINPNKTNVIFGNETNVIWGEEYIYDLIGDVKFAISARSFYQVNPEQTKVLYDKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+++ E V+D +CG GTI L LA+ K VYG E+VP+AI DA RNA+LN I NA F
Sbjct: 307 AELQEE--ETVIDAYCGIGTISLFLAKQAKKVYGVEIVPEAIEDAKRNAELNGIKNAEFA 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + D ++ DP R G L++ ++ +K R+VYVSCNP T ARDL
Sbjct: 365 VGEAETVIPKWYEEGITADTLVVDPPRKGCDEALLRTIIDMKPKRVVYVSCNPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L G Y+ +QPVDMFPHT H+ECV +L
Sbjct: 425 RVLE--------DGGYQTLEVQPVDMFPHTNHVECVAVL 455
>gi|255305404|ref|ZP_05349576.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
ATCC 43255]
Length = 451
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 131/220 (59%), Gaps = 15/220 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ +N + + +E LYG+ I E + GL F+IS SFFQTNT AEVLY + D
Sbjct: 243 LHTINDGLADAVQCDELRVLYGRDYIQEEILGLKFKISPFSFFQTNTKGAEVLYSIARDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G D ++V DL+ GTG+IG +A K VYG E+V +A+ A NAKLN ++N F+
Sbjct: 303 IG--DYNDKVVFDLYSGTGSIGQVMAGAAKKVYGIEIVEEAVVAANENAKLNGLTNCEFI 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ K+ D + KPD++I DP RPG+H I+ + A IVY+SCNP + DL
Sbjct: 361 AGDVAKVVKDLKD---KPDLIIVDPPRPGIHKDAIRDICGFGAKEIVYISCNPKSLVVDL 417
Query: 181 -DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
D+ +G Y++K ++ +DMFP+TPH+E V LL
Sbjct: 418 VDFKGYG---------YEIKMVKCMDMFPNTPHVETVALL 448
>gi|255523417|ref|ZP_05390386.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
gi|255512875|gb|EET89146.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
Length = 458
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 127/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +G E TL+GK NI++ + F IS SFFQ N Q EVLY +
Sbjct: 247 IQNVNSKKTNVILGIECITLWGKDNISDYIGDFKFNISPLSFFQVNPVQTEVLYNKALEY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E V D +CGTGTI L L++ K VYG E++PQAI +A NAK NNI+NA F+
Sbjct: 307 ASL--TGNETVFDAYCGTGTISLFLSQKSKKVYGIEIIPQAIENAKINAKQNNINNAEFI 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ KI + K D+V+ DP R G L++ + ++ RIVYVSC+P T ARDL
Sbjct: 365 VGESEKIIPELIKKGIKADVVVVDPPRKGCEKSLLEAIAQMAPERIVYVSCDPGTLARDL 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y +QPVDMFP T H+E V L
Sbjct: 425 SIL-DELG-------YTATEIQPVDMFPQTAHVETVVKL 455
>gi|409385220|ref|ZP_11237905.1| RNA methyltransferase, TrmA family [Lactococcus raffinolactis 4877]
gi|399207348|emb|CCK18820.1| RNA methyltransferase, TrmA family [Lactococcus raffinolactis 4877]
Length = 455
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 127/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN S GN G + L+G+ IT+ + + ISA SF+Q NT AEVLY +
Sbjct: 242 MQNVNASTGNNIFGSDWNVLFGQDFITDIMLERKYDISAPSFYQVNTPAAEVLYAKAIEF 301
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L + ++V+D + G GTIGL+ A VKHVYG EVV A+ +A +NA+LN I N T+V
Sbjct: 302 ADL--NAEDVVIDAYSGIGTIGLSFADKVKHVYGVEVVEAAVENARKNAELNGIDNVTYV 359
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G K+ GD+ KPD+++ DP R G+ I + A IVY+SCN AT ARD+
Sbjct: 360 TGKAEKVMGDWVIEGVKPDVILVDPPRKGLDESFITSAASVGAGSIVYISCNAATFARDV 419
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+G Y L+ +QPVD+FP T HIE V LL
Sbjct: 420 -VRFEELG-------YALEKVQPVDLFPQTHHIELVGLL 450
>gi|422846976|ref|ZP_16893659.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK72]
gi|325687169|gb|EGD29191.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK72]
Length = 464
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 134/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G++ TLYG+ IT+ + G FQIS +F+Q NT AE LY+ D
Sbjct: 253 MQNINDQPGNAIFGKDWRTLYGQDYITDRMLGNDFQISGPAFYQVNTEMAEKLYQTAIDF 312
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA +N I+NA++V
Sbjct: 313 SELTAD--DVVLDAYSGIGTIGLSVAKHVKAVYGVEVIPEAVENSQKNAAVNGITNASYV 370
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ ++ + D+++ DP R G+ IK + ++ +I Y+SCN AT ARD+
Sbjct: 371 CAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDI 430
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 431 K-LYRELG-------YELKKVQPVDLFPQTHHVECVALL 461
>gi|449990523|ref|ZP_21821591.1| putative RNA methyltransferase [Streptococcus mutans NVAB]
gi|449181612|gb|EMB83687.1| putative RNA methyltransferase [Streptococcus mutans NVAB]
Length = 454
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 126/220 (57%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLTPDDT--VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ I+ ++ +I Y+SC PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIEASTAMQPRKITYISCAPATMARDV 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G YKL +QPVD+FP T H+ECV LLE
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVSLLE 449
>gi|194397238|ref|YP_002037663.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae G54]
gi|419490940|ref|ZP_14030680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47179]
gi|419532350|ref|ZP_14071866.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47794]
gi|421275793|ref|ZP_15726620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA52612]
gi|194356905|gb|ACF55353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae G54]
gi|379594519|gb|EHZ59329.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47179]
gi|379606134|gb|EHZ70883.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47794]
gi|395872213|gb|EJG83312.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA52612]
Length = 543
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++++D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVIIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|149006286|ref|ZP_01829998.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP18-BS74]
gi|307127423|ref|YP_003879454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 670-6B]
gi|418225454|ref|ZP_12852083.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP112]
gi|419466470|ref|ZP_14006353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05248]
gi|419512421|ref|ZP_14052055.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05578]
gi|421283216|ref|ZP_15734003.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04216]
gi|421298490|ref|ZP_15749178.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA60080]
gi|147762063|gb|EDK69025.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae SP18-BS74]
gi|306484485|gb|ADM91354.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 670-6B]
gi|353882762|gb|EHE62573.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae NP112]
gi|379544593|gb|EHZ09737.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05248]
gi|379636891|gb|EIA01449.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA05578]
gi|395881179|gb|EJG92228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04216]
gi|395902446|gb|EJH13379.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA60080]
Length = 543
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++++D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVIIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|415886105|ref|ZP_11547928.1| YefA [Bacillus methanolicus MGA3]
gi|387588758|gb|EIJ81079.1| YefA [Bacillus methanolicus MGA3]
Length = 460
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 128/222 (57%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++NVN N +GE+ L+G I + + + F ISA SF+Q N Q +VLY +
Sbjct: 245 VHNVNPKRTNVILGEKTTVLWGNEVIYDYIGNVKFAISALSFYQVNPDQTKVLYDKALEY 304
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
AGL G E V+D +CG GTI L LA+ K V+G EVVP+AI DA RNA+LN I+NA F
Sbjct: 305 AGL--TGEETVIDAYCGIGTISLFLAQKAKKVFGVEVVPEAIEDAKRNAELNGITNAEFA 362
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + + K D+++ DP R G L+K ++ +K ++VYVSCNPAT +RDL
Sbjct: 363 VGEAEVVIPKWYKEGNKADVLVVDPPRKGCDEALLKAIIDMKPKKVVYVSCNPATLSRDL 422
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G YK +QPVDMFP T H+E + L L
Sbjct: 423 RILED--------GGYKTLEVQPVDMFPQTMHVEVIVKLVLK 456
>gi|307708648|ref|ZP_07645111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
NCTC 12261]
gi|307615222|gb|EFN94432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
NCTC 12261]
Length = 459
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN N G+E TLYG+ IT+ + G +QI+ +F+Q NT AE LY+ D
Sbjct: 243 MQNVNDQNTNAIFGKEWRTLYGQDYITDQMLGTNYQIAGPAFYQVNTEMAEKLYQTAIDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L++D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA+LNNISNA +V
Sbjct: 303 AELKED--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNNISNAHYV 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 361 CDTAENAMKNWLKDGIQPSLILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDI 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+L +QPVD+FP T H+E V LL
Sbjct: 421 K-LYRELG-------YELNKVQPVDLFPQTHHVEAVSLL 451
>gi|296184699|ref|ZP_06853110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
carboxidivorans P7]
gi|296050481|gb|EFG89904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
carboxidivorans P7]
Length = 463
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 127/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ NVN+ N +G E TL+GK NI++ + F IS SFFQ N Q EVLY +
Sbjct: 252 IQNVNSKKTNVILGIECITLWGKDNISDYIGDFKFNISPLSFFQVNPVQTEVLYNKALEY 311
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E V D +CGTGTI L L++ K VYG E++PQAI +A NAK NNI+NA F+
Sbjct: 312 ASL--TGNETVFDAYCGTGTISLFLSQKSKKVYGIEIIPQAIENAKINAKQNNINNAEFI 369
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ KI + K D+V+ DP R G L++ + ++ RIVYVSC+P T ARDL
Sbjct: 370 VGESEKIIPELIKKGIKADVVVVDPPRKGCEKSLLEAIAQMAPERIVYVSCDPGTLARDL 429
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y +QPVDMFP T H+E V L
Sbjct: 430 SILDE-LG-------YTATEIQPVDMFPQTAHVETVVKL 460
>gi|421206483|ref|ZP_15663543.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2090008]
gi|421229675|ref|ZP_15686346.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2061376]
gi|421291901|ref|ZP_15742639.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA56348]
gi|421311836|ref|ZP_15762441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58981]
gi|395576122|gb|EJG36680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2090008]
gi|395596083|gb|EJG56306.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2061376]
gi|395894118|gb|EJH05099.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA56348]
gi|395911225|gb|EJH22093.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA58981]
Length = 543
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++++D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVIIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|421289654|ref|ZP_15740405.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA54354]
gi|421304972|ref|ZP_15755628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA62331]
gi|395888895|gb|EJG99905.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA54354]
gi|395905634|gb|EJH16539.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA62331]
Length = 543
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++++D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVIIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVETVALL 448
>gi|440780726|ref|ZP_20959197.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
pasteurianum DSM 525]
gi|440221314|gb|ELP60519.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
pasteurianum DSM 525]
Length = 454
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 131/221 (59%), Gaps = 14/221 (6%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ N S + + LYG+ I E + GL F+IS SFFQTNT AE LY ++ D
Sbjct: 243 LHTTNDSFSDVVAADRIDILYGRDYIVEKVLGLKFKISPLSFFQTNTLGAEKLYSIVMDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIG-LTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATF 119
G + S+++ DL+CGTGTIG + A+ K V G E++ +A+ A NAKLN++ N F
Sbjct: 303 IG--EAASKLIFDLYCGTGTIGQIAAAKNAKKVIGIELIEEAVKAANENAKLNDLDNCNF 360
Query: 120 VQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARD 179
+ GD+ K+ D + KPD++I DP RPG+H K + +++K A IVYVSCNP T D
Sbjct: 361 IAGDVAKVIQDLQD---KPDVIILDPPRPGVHPKALDYVIKFDAKEIVYVSCNPKTLMVD 417
Query: 180 LDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L L I YK++ ++ +DMFP T H+ECV LE
Sbjct: 418 LRKL--------IDRGYKVERVKGMDMFPMTGHLECVVRLE 450
>gi|329769944|ref|ZP_08261342.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis
M325]
gi|328837548|gb|EGF87174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis
M325]
Length = 445
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 126/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N N N G++ LYGK IT+TL G+ F+IS SF+Q N Q EVLY +
Sbjct: 234 MLNTNNKKTNVIFGDKTENLYGKDYITDTLGGIEFKISLRSFYQVNPIQTEVLYSKALEL 293
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L D + ++D +CG GTI L A+ VK VYG E+V A+ DA NAK NNI+N F+
Sbjct: 294 AKLNQDDT--IIDAYCGIGTISLFAAQKVKKVYGIEIVEAAVLDARENAKNNNITNVEFL 351
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G + D + + D VI DP R G ++ L + +IVYVSCNPAT ARD+
Sbjct: 352 LGKSEDVIKDLISKDVQIDAVIVDPPRKGCEESFLRDLASMGIEKIVYVSCNPATLARDM 411
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ + G+G YKL ++QPVDMFP T H+E V LL
Sbjct: 412 E-IMRGLG-------YKLGAVQPVDMFPGTYHVEAVSLL 442
>gi|284049068|ref|YP_003399407.1| RNA methyltransferase, TrmA family [Acidaminococcus fermentans DSM
20731]
gi|283953289|gb|ADB48092.1| RNA methyltransferase, TrmA family [Acidaminococcus fermentans DSM
20731]
Length = 458
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+NT N +G + ++G I + L TF IS +SFFQ NT QAE LY+
Sbjct: 247 VQNLNTRHTNVIMGPKNKVIWGPGVIHDRLGKFTFTISPHSFFQVNTLQAEKLYETALQY 306
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E V+D +CGTGTI L LA+ K G E+V AI DA +NA+ N +SN F+
Sbjct: 307 AAL--TGKEKVIDAYCGTGTITLFLAQKAKRALGIEIVEPAIRDARQNARDNQVSNVDFL 364
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD K + +PD+V+ DP R G ++++ + K++ R+VYVSCNPA+ ARD
Sbjct: 365 CGDAAKEMPELVRQGSRPDVVVLDPPRAGCEQRVLEAIAKVRPQRVVYVSCNPASLARDA 424
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221
L KG + ++ +QPVDMFPHT H+E VCLL L
Sbjct: 425 AIL-------RDKG-FVVRKVQPVDMFPHTSHVETVCLLTL 457
>gi|449882791|ref|ZP_21784801.1| putative RNA methyltransferase [Streptococcus mutans SA38]
gi|449926485|ref|ZP_21800785.1| putative RNA methyltransferase [Streptococcus mutans 4SM1]
gi|449160637|gb|EMB63889.1| putative RNA methyltransferase [Streptococcus mutans 4SM1]
gi|449250436|gb|EMC48495.1| putative RNA methyltransferase [Streptococcus mutans SA38]
Length = 451
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 125/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLAPDDT--VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ +I Y+SC PAT ARD+
Sbjct: 358 SDSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIKASTAMQPRKITYISCAPATMARDV 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKL +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVALL 448
>gi|418975219|ref|ZP_13523128.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK1074]
gi|383348590|gb|EID26549.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus oralis
SK1074]
Length = 452
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ +
Sbjct: 240 MQNINDQNTNAIFGKEWKTLYGQDYITDQMLGNDFQIAGPAFYQVNTQMAEKLYQTAINF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA +NNI+NA +V
Sbjct: 300 AELKKD--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAAINNITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLREGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLL 448
>gi|450030471|ref|ZP_21833223.1| putative RNA methyltransferase [Streptococcus mutans G123]
gi|449192752|gb|EMB94159.1| putative RNA methyltransferase [Streptococcus mutans G123]
Length = 454
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 126/220 (57%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLTPDDT--VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ I+ ++ +I Y+SC PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIEASTAMQPRKITYISCAPATMARDV 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G YKL +QPVD+FP T H+ECV LLE
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVSLLE 449
>gi|373857876|ref|ZP_09600616.1| RNA methyltransferase, TrmA family [Bacillus sp. 1NLA3E]
gi|372452547|gb|EHP26018.1| RNA methyltransferase, TrmA family [Bacillus sp. 1NLA3E]
Length = 457
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 128/220 (58%), Gaps = 10/220 (4%)
Query: 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
NVN N +G+E L+G+ I + + + F IS+ SF+Q N Q +VLY + A
Sbjct: 248 NVNAKKTNVIMGDESEVLWGEEVIYDYIGEIKFAISSRSFYQVNPDQTKVLYGKALEYAD 307
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
LR G E V+D +CG GTI L LA+ + VYG E+VP+AI DA RNA+LN I NA F G
Sbjct: 308 LR--GEETVIDAYCGIGTISLFLAQKARKVYGVEIVPEAIEDARRNAELNGIVNAEFAVG 365
Query: 123 DLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182
+ + + + + D+++ DP R G L++ ++++K ++VYVSCNPAT ARDL +
Sbjct: 366 EAETVIPRWYESGVQADVLVVDPPRKGCDEALLRTIIEMKPKKVVYVSCNPATLARDLRF 425
Query: 183 LCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
L G YK +QPVDMFP T H E V + L
Sbjct: 426 LED--------GGYKTVEVQPVDMFPQTMHCEAVAKIILK 457
>gi|450126922|ref|ZP_21868416.1| putative RNA methyltransferase [Streptococcus mutans U2A]
gi|449231166|gb|EMC30378.1| putative RNA methyltransferase [Streptococcus mutans U2A]
Length = 454
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 126/220 (57%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLTPDDT--VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ I+ ++ +I Y+SC PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIEASTAMQPRKITYISCAPATMARDV 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G YKL +QPVD+FP T H+ECV LLE
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVSLLE 449
>gi|337281824|ref|YP_004621295.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
ATCC 15912]
gi|335369417|gb|AEH55367.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus parasanguinis
ATCC 15912]
Length = 452
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 131/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQIS +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNAFQISGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+++ ++V+D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA LN I+NA +V
Sbjct: 300 AELKEE--DVVIDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSQKNASLNGITNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P ++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTAILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVSLL 448
>gi|154496435|ref|ZP_02035131.1| hypothetical protein BACCAP_00727 [Bacteroides capillosus ATCC
29799]
gi|150274518|gb|EDN01595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 454
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 124/216 (57%), Gaps = 10/216 (4%)
Query: 4 VNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL 63
VN N +G+ TL+G+ + +TL G TF++S SF+Q N +QAEVLY D AGL
Sbjct: 245 VNEKKNNVILGDSYRTLWGQDWLEDTLCGFTFRLSVPSFYQVNANQAEVLYGRALDFAGL 304
Query: 64 RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
G E VLDL+CG GTI L +AR V+G EVVPQA+ DA NA N ++NA F+ GD
Sbjct: 305 --TGRETVLDLYCGIGTISLVMARQAGKVFGAEVVPQAVEDARENALRNGVNNAEFLCGD 362
Query: 124 LNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYL 183
+ KPD+V DP R G+ ++ ++ + R+VYVSC+PAT ARD+
Sbjct: 363 AGEAARALAARGVKPDVVCVDPPRKGLAEDVVDTIVSMAPERVVYVSCDPATLARDVKRF 422
Query: 184 CHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
+ Y L+ + VDMFP T H+E V LL
Sbjct: 423 --------VSLGYVLRKAEAVDMFPRTAHVESVVLL 450
>gi|449898381|ref|ZP_21790582.1| putative RNA methyltransferase [Streptococcus mutans R221]
gi|449259897|gb|EMC57413.1| putative RNA methyltransferase [Streptococcus mutans R221]
Length = 451
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 125/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLAPDDT--VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ +I Y+SC PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIKASTAMQPRKITYISCAPATMARDV 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKL +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVALL 448
>gi|332879258|ref|ZP_08446955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 329 str. F0087]
gi|357048050|ref|ZP_09109628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paraprevotella clara
YIT 11840]
gi|332682678|gb|EGJ55578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 329 str. F0087]
gi|355529115|gb|EHG98569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paraprevotella clara
YIT 11840]
Length = 491
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 129/219 (58%), Gaps = 13/219 (5%)
Query: 4 VNTSVGNTSVGE-EEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG 62
VN N ++G+ + T G +I + L F++ SF+QTNT QA LYK+ D AG
Sbjct: 281 VNNLKYNDTIGDLDVITFRGNDHIYLQMENLRFKVGPKSFYQTNTDQAYELYKVARDFAG 340
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
L G+E+V DL+ GTGTI +A + V G E VP+AI DA N+++N I N F G
Sbjct: 341 L--TGTELVYDLYTGTGTIANFVAGKARKVIGIEYVPEAIEDAKINSQINGIGNTLFFAG 398
Query: 123 DLNKI-GGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
D+ I +F A +PD++I+DP R GMH +I+ +L RIVYVSCNPAT ARDL
Sbjct: 399 DMKDILNKEFITAHGQPDVIITDPPRAGMHKDVIETILFAAPHRIVYVSCNPATQARDLA 458
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L YK+ ++PVDMFPHT H+E V +LE
Sbjct: 459 LL---------DSQYKIMGVRPVDMFPHTQHVENVVMLE 488
>gi|417972607|ref|ZP_12613501.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus ruminis ATCC
25644]
gi|346331000|gb|EGX99225.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus ruminis ATCC
25644]
Length = 459
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN N +G++ L+GK +I +TL GL F ISA SF+Q N Q E LY+
Sbjct: 244 MQNVNRDRTNVILGQKTKLLFGKDHIKDTLNGLEFDISAQSFYQVNPVQTEKLYQTAIKF 303
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E +D +CG GTI L+LA + VYG E+V AI DA RNA+LN + N F
Sbjct: 304 ANL--TGEETAIDAYCGIGTISLSLAEKCRAVYGVEIVEAAIEDAKRNAELNELDNLRFE 361
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + +P++++ DP R G+ LI+ + RIVYVSCNPAT RD+
Sbjct: 362 VGNAEDWMAKWKEKGIRPNVIMVDPPRKGLTESLIESATGMNPDRIVYVSCNPATLVRDI 421
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L KG + +QPVD FP T H+ECV ++E
Sbjct: 422 QSLME-------KGYHVEGRIQPVDQFPQTAHVECVTVME 454
>gi|417698556|ref|ZP_12347728.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41317]
gi|419505960|ref|ZP_14045621.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA49194]
gi|332200601|gb|EGJ14673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41317]
gi|379607874|gb|EHZ72620.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA49194]
Length = 451
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 132/219 (60%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG+ IT+ + G FQI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFGKEWRTLYGQDYITDQMLGNDFQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++++D + G GTIGL++A+ VK VYG E++P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVIIDAYSGIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+E V LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVEAVSLL 448
>gi|290580745|ref|YP_003485137.1| RNA methyltransferase [Streptococcus mutans NN2025]
gi|449969565|ref|ZP_21813305.1| putative RNA methyltransferase [Streptococcus mutans 2VS1]
gi|450059156|ref|ZP_21843362.1| putative RNA methyltransferase [Streptococcus mutans NLML4]
gi|450093191|ref|ZP_21856474.1| putative RNA methyltransferase [Streptococcus mutans W6]
gi|450147749|ref|ZP_21875247.1| putative RNA methyltransferase [Streptococcus mutans 14D]
gi|450164465|ref|ZP_21881386.1| putative RNA methyltransferase [Streptococcus mutans B]
gi|254997644|dbj|BAH88245.1| putative RNA methyltransferase [Streptococcus mutans NN2025]
gi|449174084|gb|EMB76600.1| putative RNA methyltransferase [Streptococcus mutans 2VS1]
gi|449203223|gb|EMC04095.1| putative RNA methyltransferase [Streptococcus mutans NLML4]
gi|449217410|gb|EMC17465.1| putative RNA methyltransferase [Streptococcus mutans W6]
gi|449236609|gb|EMC35519.1| putative RNA methyltransferase [Streptococcus mutans 14D]
gi|449241940|gb|EMC40550.1| putative RNA methyltransferase [Streptococcus mutans B]
Length = 454
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 126/220 (57%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLTPDDT--VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ I+ ++ +I Y+SC PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIEASTAMQPRKITYISCAPATMARDV 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G YKL +QPVD+FP T H+ECV LLE
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVSLLE 449
>gi|422870640|ref|ZP_16917133.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1087]
gi|328946582|gb|EGG40721.1| 23S rRNA (uracil-5-)-methyltransferase [Streptococcus sanguinis
SK1087]
Length = 465
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 134/219 (61%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N GN G++ TLYG+ IT+ + G FQIS +F+Q NT AE LY+ D
Sbjct: 253 MQNINDQPGNAIFGKDWRTLYGQDYITDRMLGNDFQISGPAFYQVNTEMAEKLYQTAIDF 312
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D ++VLD + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA +N I+NA++V
Sbjct: 313 SELTAD--DVVLDAYSGIGTIGLSVAKHVKAVYGVEVIPEAVENSQKNAAVNGITNASYV 370
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ ++ + D+++ DP R G+ IK + ++ +I Y+SCN AT ARD+
Sbjct: 371 CAPAEEAIQNWLKEGIQADVILVDPPRKGLTESFIKASVSMEPKKITYISCNVATMARDI 430
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 431 K-LYRELG-------YELKKVQPVDLFPQTHHVECVSLL 461
>gi|421146271|ref|ZP_15605988.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae GB00112]
gi|401687055|gb|EJS83018.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
agalactiae GB00112]
Length = 453
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/220 (40%), Positives = 127/220 (57%), Gaps = 10/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N G+E TLYG I + + G T+ ISA SF+Q NT AE LY+ D
Sbjct: 240 MQNINDRNSNVIFGKEFRTLYGSDTIEDQMLGNTYAISAQSFYQVNTEMAEKLYQKAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L + +IV+D + G GTIGL++A+ VKHVYG EVV +A+SDA NA N I+N+T+V
Sbjct: 300 SDL--NSEDIVIDAYSGIGTIGLSVAKQVKHVYGVEVVEKAVSDAKENATRNGITNSTYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
+ KP +++ DP R G+ + + KA +I Y+SCN AT ARD+
Sbjct: 358 ADSAENAMAKWLKEGIKPTVIMVDPPRKGLTESFVYSAAQTKADKITYISCNSATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L +G Y L +QPVD+FP T H+EC+ L++
Sbjct: 418 K-LFEELG-------YHLVKIQPVDLFPMTHHVECIALIQ 449
>gi|450131653|ref|ZP_21869614.1| putative RNA methyltransferase [Streptococcus mutans NLML8]
gi|449153659|gb|EMB57309.1| putative RNA methyltransferase [Streptococcus mutans NLML8]
Length = 451
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 125/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLTPDDT--VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ +I Y+SC PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIKASTAMQPRKITYISCAPATMARDV 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKL +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVALL 448
>gi|323341240|ref|ZP_08081486.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC
25644]
gi|323091297|gb|EFZ33923.1| 23S rRNA (uracil-5-)-methyltransferase [Lactobacillus ruminis ATCC
25644]
Length = 469
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 9/220 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN N +G++ L+GK +I +TL GL F ISA SF+Q N Q E LY+
Sbjct: 254 MQNVNRDRTNVILGQKTKLLFGKDHIKDTLNGLEFDISAQSFYQVNPVQTEKLYQTAIKF 313
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G E +D +CG GTI L+LA + VYG E+V AI DA RNA+LN + N F
Sbjct: 314 ANL--TGEETAIDAYCGIGTISLSLAEKCRAVYGVEIVEAAIEDAKRNAELNELDNLRFE 371
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G+ + +P++++ DP R G+ LI+ + RIVYVSCNPAT RD+
Sbjct: 372 VGNAEDWMAKWKEKGIRPNVIMVDPPRKGLTESLIESATGMNPDRIVYVSCNPATLVRDI 431
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLE 220
L KG + +QPVD FP T H+ECV ++E
Sbjct: 432 QSLME-------KGYHVEGRIQPVDQFPQTAHVECVTVME 464
>gi|354808062|ref|ZP_09041506.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus curvatus
CRL 705]
gi|354513470|gb|EHE85473.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus curvatus
CRL 705]
Length = 454
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 123/222 (55%), Gaps = 10/222 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M NVN + N G+E + G+ I + L GL F+ISA SF+Q N Q EVLY +
Sbjct: 243 MQNVNAAQTNVIFGDETKLIAGRDFIRDELMGLKFEISAQSFYQVNPVQTEVLYNKAIEA 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L G+E V+D + G GTI L +A+ K VYG EVV A+ DA NAK+N I N F
Sbjct: 303 AEL--TGNETVIDAYSGIGTISLAVAKHAKQVYGVEVVESAVMDARHNAKINGIENVEFT 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
G ++ + K D +I DP R G+ I+ + +LK ++VYVSCNPAT ARDL
Sbjct: 361 LGKAEEVMAQWQADDLKVDALIVDPPRKGLEASFIEAVGQLKPAKMVYVSCNPATLARDL 420
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222
+ L Y+ +S QPVDMFP T H+E V L L
Sbjct: 421 ELLA--------AQGYQAESTQPVDMFPQTLHVESVTKLVLK 454
>gi|325836777|ref|ZP_08166244.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1]
gi|325491155|gb|EGC93444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1]
Length = 459
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 124/218 (56%), Gaps = 10/218 (4%)
Query: 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCA 61
N+N +V N +GE+ +YG+ I + + G+ F IS SF+Q N Q E LY + A
Sbjct: 247 QNINPNVTNAILGEKTNIIYGEGYIYDEMNGIGFAISPRSFYQVNPVQTETLYSKAVEFA 306
Query: 62 GLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
GL G EIV D +CG GTI L LA+ K VYG E++P+AI+DA NAKLN N F
Sbjct: 307 GL--TGEEIVFDAYCGIGTITLFLAQHAKKVYGVEIIPEAIADANMNAKLNGFENTEFAV 364
Query: 122 GDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181
G ++ + PD+++ DP R G L+ +L+ RIVYVSC+ +T ARD+
Sbjct: 365 GKSEEVIPAWIEQGIVPDVIVVDPPRKGCDKTLLDTMLEAAPKRIVYVSCDSSTLARDIK 424
Query: 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L + G Y+L+ QPVDMFP T H+E V LL
Sbjct: 425 IL--------VDGGYQLEVAQPVDMFPQTSHVEVVALL 454
>gi|188588342|ref|YP_001919973.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E3 str. Alaska E43]
gi|251777708|ref|ZP_04820628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|188498623|gb|ACD51759.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E3 str. Alaska E43]
gi|243082023|gb|EES47913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 450
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 127/219 (57%), Gaps = 13/219 (5%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
++ N S + + E+ LYG+ I E L GL F+IS SFFQTNT AE LY L+ D
Sbjct: 243 LHTENNSFSDAVIPEKVNVLYGRDYIQEKLLGLNFKISPFSFFQTNTKGAESLYSLVRDF 302
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
G ++ ++V DL+CGTGTIG +A K V G E++ +A+ A NAKLN ++N F+
Sbjct: 303 MGSSEN--KVVFDLYCGTGTIGQIVAPNAKKVVGIELIEEAVEAAKENAKLNGLNNCEFL 360
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
GD+ +I KPDI+I DP R G+H K + +++K AP I+YVSCNP T DL
Sbjct: 361 AGDVAEI---IKTVKDKPDIIILDPPRSGVHPKALDYVIKFNAPEIIYVSCNPKTLVTDL 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L ++ YK+ Q DMFP+TPH E + L
Sbjct: 418 KVL--------VERGYKIIQTQVKDMFPNTPHAETIVKL 448
>gi|450071561|ref|ZP_21848179.1| putative RNA methyltransferase [Streptococcus mutans M2A]
gi|449212221|gb|EMC12595.1| putative RNA methyltransferase [Streptococcus mutans M2A]
Length = 451
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 125/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLTPDDT--VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ +I Y+SC PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIKASTAMQPRKITYISCAPATMARDV 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKL +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVALL 448
>gi|450034933|ref|ZP_21834721.1| putative RNA methyltransferase [Streptococcus mutans M21]
gi|450109389|ref|ZP_21861411.1| putative RNA methyltransferase [Streptococcus mutans SM6]
gi|449196049|gb|EMB97347.1| putative RNA methyltransferase [Streptococcus mutans M21]
gi|449226279|gb|EMC25829.1| putative RNA methyltransferase [Streptococcus mutans SM6]
Length = 451
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 125/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLTPDDT--VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ +I Y+SC PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIKASTAMQPRKITYISCAPATMARDV 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKL +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVALL 448
>gi|417848419|ref|ZP_12494364.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK1073]
gi|339452633|gb|EGP65256.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus mitis
SK1073]
Length = 451
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 131/219 (59%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
M N+N N +E TLYG+ IT+ + G +QI+ +F+Q NT AE LY+ D
Sbjct: 240 MQNINDQNTNAIFSKEWRTLYGQDFITDQMLGNDYQIAGPAFYQVNTEMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
A L+ D ++V D + G GTIGL++A+ VK VYG EV+P+A+ ++ +NA+LNNISNA +V
Sbjct: 300 AELKKD--DVVTDAYSGIGTIGLSVAKHVKEVYGVEVIPEAVENSKKNAQLNNISNAHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
++ +P +++ DP R G+ IK + A RI Y+SCN AT ARD+
Sbjct: 358 CDTAENAMKNWLKEGIQPTVILVDPPRKGLTESFIKASSQTGADRIAYISCNVATMARDI 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G Y+LK +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYQELG-------YELKKVQPVDLFPQTHHVECVALL 448
>gi|450101655|ref|ZP_21859124.1| putative RNA methyltransferase [Streptococcus mutans SF1]
gi|450170602|ref|ZP_21883566.1| putative RNA methyltransferase [Streptococcus mutans SM4]
gi|449219878|gb|EMC19820.1| putative RNA methyltransferase [Streptococcus mutans SF1]
gi|449245500|gb|EMC43835.1| putative RNA methyltransferase [Streptococcus mutans SM4]
Length = 451
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 125/219 (57%), Gaps = 10/219 (4%)
Query: 1 MNNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDC 60
+ N+N N G E TLYG+ I +T+ G + ISA SF+Q NT AE LY+ D
Sbjct: 240 IQNINDRNTNAIFGSEFRTLYGEDTIEDTMLGNRYIISAQSFYQVNTVMAEKLYQTAIDF 299
Query: 61 AGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
+ L D + V+D + G GTIGL+ A+ VK VYG EV+ A+ DA +NA LNNI+N +V
Sbjct: 300 SDLAPDDT--VIDAYSGIGTIGLSFAKKVKDVYGVEVIEAAVRDAEKNAALNNITNVHYV 357
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180
K + KPD+++ DP R G+ IK ++ +I Y+SC PAT ARD+
Sbjct: 358 ADSAEKAMASWSKRGIKPDVILVDPPRKGLTESFIKASTAMQPRKITYISCAPATMARDV 417
Query: 181 DYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLL 219
L +G YKL +QPVD+FP T H+ECV LL
Sbjct: 418 K-LYEELG-------YKLVKVQPVDLFPQTHHVECVALL 448
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,572,882,128
Number of Sequences: 23463169
Number of extensions: 144073015
Number of successful extensions: 359899
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5910
Number of HSP's successfully gapped in prelim test: 2990
Number of HSP's that attempted gapping in prelim test: 336634
Number of HSP's gapped (non-prelim): 9269
length of query: 222
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 85
effective length of database: 9,144,741,214
effective search space: 777303003190
effective search space used: 777303003190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)