BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043853
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 107/200 (53%), Gaps = 23/200 (11%)
Query: 20 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79
+GK I E L + + I NSFFQTN++QA L + + + E +LD++ G G
Sbjct: 248 FWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVE-----GEKILDMYSGVG 302
Query: 80 TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD 139
T G+ LA+ +V G++ AI A RN ++NN+ +A F ++ D + D
Sbjct: 303 TFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV-DAEF------EVASDREVSVKGFD 355
Query: 140 IVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLK 199
VI DP R G+H +L+K L + K IVYVSCNP T ARD+ L Y++
Sbjct: 356 TVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML-----------DYRID 404
Query: 200 SLQPVDMFPHTPHIECVCLL 219
+ +DMFPHTPH+E V L
Sbjct: 405 EIVALDMFPHTPHVELVAKL 424
>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 107/200 (53%), Gaps = 23/200 (11%)
Query: 20 LYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79
+GK I E L + + I NSFFQTN++QA L + + + E +LD++ G G
Sbjct: 248 FWGKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVE-----GEKILDMYSGVG 302
Query: 80 TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD 139
T G+ LA+ +V G++ AI A RN ++NN+ +A F ++ D + D
Sbjct: 303 TFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV-DAEF------EVASDREVSVKGFD 355
Query: 140 IVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLK 199
VI DP R G+H +L+K L + K IVYVSCNP T ARD+ L Y++
Sbjct: 356 TVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKML-----------DYRID 404
Query: 200 SLQPVDMFPHTPHIECVCLL 219
+ +DMFPHTPH+E V L
Sbjct: 405 EIVALDMFPHTPHVELVAKL 424
>pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine.
pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine
Length = 433
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 92/189 (48%), Gaps = 13/189 (6%)
Query: 32 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSE-IVLDLFCGTGTIGLTLARWVK 90
GL S F Q N A V K++ D E VLDLFCG G L LA
Sbjct: 253 GLRLTFSPRDFIQVN---AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA 309
Query: 91 HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM 150
V G E VP + +NA+LN + N TF +L + A D V+ DP R G
Sbjct: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369
Query: 151 HMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHT 210
+++ ++KL+ RIVYVSCNPAT ARD + L +K Y + L +DMFPHT
Sbjct: 370 -AGVMQQIIKLEPIRIVYVSCNPATLARDSEAL--------LKAGYTIARLAMLDMFPHT 420
Query: 211 PHIECVCLL 219
H+E + L
Sbjct: 421 GHLESMVLF 429
>pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster
Containing E. Coli 23s Ribosomal Rna 5-Methyluridine
Methyltransferase
Length = 433
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 32 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSE-IVLDLFCGTGTIGLTLARWVK 90
GL S F Q N A V K + D E VLDLFCG G L LA
Sbjct: 253 GLRLTFSPRDFIQVN---AGVNQKXVARALEWLDVQPEDRVLDLFCGXGNFTLPLATQAA 309
Query: 91 HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM 150
V G E VP + +NA+LN + N TF +L + A D V+ DP R G
Sbjct: 310 SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA 369
Query: 151 HMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHT 210
+ + ++KL+ RIVYVSCNPAT ARD + L +K Y + L +D FPHT
Sbjct: 370 -AGVXQQIIKLEPIRIVYVSCNPATLARDSEAL--------LKAGYTIARLAXLDXFPHT 420
Query: 211 PHIECVCLL 219
H+E L
Sbjct: 421 GHLESXVLF 429
>pdb|3BT7|A Chain A, Structure Of E. Coli 5-Methyluridine Methyltransferase
Trma In Complex With 19 Nucleotide T-Arm Analogue
pdb|3BT7|B Chain B, Structure Of E. Coli 5-Methyluridine Methyltransferase
Trma In Complex With 19 Nucleotide T-Arm Analogue
Length = 369
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 28/202 (13%)
Query: 31 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK 90
+ + ++ NSF Q N A + +++E + +L+L+CG G L LAR
Sbjct: 180 KEMIYRQVENSFTQPN---AAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFD 236
Query: 91 HVYGYEVVPQAISDACRNAKLNNISNATFVQ-------------GDLNKIGGDFGNAFPK 137
V E+ +++ A N N+I N ++ + N++ G ++ +
Sbjct: 237 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-Q 295
Query: 138 PDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYK 197
+ + DP R G+ + K + PRI+Y+SCNP T ++L+ L +K
Sbjct: 296 CETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ---------THK 344
Query: 198 LKSLQPVDMFPHTPHIECVCLL 219
++ L D FP+T H++C LL
Sbjct: 345 VERLALFDQFPYTHHMQCGVLL 366
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 26 ITETLRG--LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGL 83
+ + LRG L F+ + F + + L+E+ +DD +LDL CG G IG+
Sbjct: 14 VEDILRGKKLKFKTDSGVFSYGKVDKGTKI--LVENVVVDKDDD---ILDLGCGYGVIGI 68
Query: 84 TLARWVKHVYGYEVVPQAISDACRNAKLNNISN 116
LA VK ++ +AI A N KLNN+ N
Sbjct: 69 ALADEVKSTTXADINRRAIKLAKENIKLNNLDN 101
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 20/127 (15%)
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNK 126
+++ +D+ CGTG + L LA V+ VY + P+AIS N + + + N T +GD +
Sbjct: 34 NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEXNLQRHGLGDNVTLXEGDAPE 93
Query: 127 -----------IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPAT 175
+ G G + +I D +PG + + LL+ K
Sbjct: 94 ALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETK--------FEAXE 145
Query: 176 CARDLDY 182
C RDL +
Sbjct: 146 CLRDLGF 152
>pdb|3A27|A Chain A, Crystal Structure Of M. Jannaschii Tyw2 In Complex With
Adomet
Length = 272
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 68 SEIVLDLFCGTGTIGLTLARWVKH--VYGYEVVPQAISDACRNAKLNNISNATFVQGD 123
+E+V+D+F G G + LA++ K VY E P A C N KLN ++N + D
Sbjct: 120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILAD 177
>pdb|2ZIF|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8- Complexed With
S- Adenosyl-L-Methionine
pdb|2ZIF|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8- Complexed With
S- Adenosyl-L-Methionine
pdb|2ZIG|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8
pdb|2ZIG|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8
Length = 297
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 15 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDL 74
+ E + K + R + I S T H A +L E + ++VLD
Sbjct: 186 QREKSRLPKEDFHRFFRQIWDDIPGES---TKDHPAPFPLELAERLVRMFSFVGDVVLDP 242
Query: 75 FCGTGTIGLTLARWVKHVYGYEVVPQ 100
F GTGT + ARW + G E+VP+
Sbjct: 243 FAGTGTTLIAAARWGRRALGVELVPR 268
>pdb|2ZIE|A Chain A, Crystal Structure Of Ttha0409, Putatative Dna Modification
Methylase From Thermus Thermophilus Hb8-
Selenomethionine Derivative
pdb|2ZIE|B Chain B, Crystal Structure Of Ttha0409, Putatative Dna Modification
Methylase From Thermus Thermophilus Hb8-
Selenomethionine Derivative
Length = 297
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 15 EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDL 74
+ E + K + R + I S T H A +L E ++VLD
Sbjct: 186 QREKSRLPKEDFHRFFRQIWDDIPGES---TKDHPAPFPLELAERLVRXFSFVGDVVLDP 242
Query: 75 FCGTGTIGLTLARWVKHVYGYEVVPQ 100
F GTGT + ARW + G E+VP+
Sbjct: 243 FAGTGTTLIAAARWGRRALGVELVPR 268
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 71 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD 130
VLDL CGTG L LA V G ++ + + A R AK N+ F+QGD+ +I
Sbjct: 45 VLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIA-- 101
Query: 131 FGNAF 135
F N F
Sbjct: 102 FKNEF 106
>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
Length = 282
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKH-VYGYEVVPQAISDACRNAKLNNISNATFV- 120
+R G + V D+ G+G IG+++A++ V+ +V +A+ A +NA+ + +S+ FV
Sbjct: 117 IRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVR 176
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDP 145
+G+ + F F ++++S+P
Sbjct: 177 KGEFLE---PFKEKFASIEMILSNP 198
>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
pdb|1NV9|A Chain A, Hemk, Apo Structure
Length = 284
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKH-VYGYEVVPQAISDACRNAKLNNISNATFV- 120
+R G + V D+ G+G IG+++A++ V+ +V +A+ A +NA+ + +S+ FV
Sbjct: 119 IRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVR 178
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDP 145
+G+ + F F ++++S+P
Sbjct: 179 KGEFLE---PFKEKFASIEMILSNP 200
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 69 EIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNA-TFVQGDLNK 126
+IVLD+ CGTG + + A+ KHV G + + I A +LN S+ T ++G L
Sbjct: 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVD-MSSIIEMAKELVELNGFSDKITLLRGKLE- 97
Query: 127 IGGDFGNAFPKPDIVISD 144
D FPK DI+IS+
Sbjct: 98 ---DVHLPFPKVDIIISE 112
>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
Length = 294
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 63 LRDDGSEIVLDLFCGTGTIGLTLARWVKH-VYGYEVVPQAISDACRNAKLNNISNATFV- 120
+R G + V D+ G+G IG+++A++ V+ +V +A+ A +NA+ + +S+ FV
Sbjct: 129 IRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVR 188
Query: 121 QGDLNKIGGDFGNAFPKPDIVISDP 145
+G+ + F F + ++S+P
Sbjct: 189 KGEFLE---PFKEKFASIEXILSNP 210
>pdb|2AS0|A Chain A, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
pdb|2AS0|B Chain B, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
Length = 396
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 71 VLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIG 128
VLD+F TG + A V G + P+AI A NAKLN + + F+ G +
Sbjct: 221 VLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRXKFIVGSAFEEX 280
Query: 129 GDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK 160
K DIV+ DP H K +K L+
Sbjct: 281 EKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLR 312
>pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein
(N5)-Glutamine Methyltransferase (Hemk)
Length = 277
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 71 VLDLFCGTGTIGLTLA--RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK-- 126
+LDL GTG I L LA R + + +P A+S A RNA+ I N +Q D
Sbjct: 113 ILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL 172
Query: 127 IGGDFGNAFPKPDIVISDPNRPGMHMKLIKF 157
G F P + D P + ++F
Sbjct: 173 AGQQFAMIVSNPPYI--DEQDPHLQQGDVRF 201
>pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor
Methylation By Prmc
Length = 276
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 71 VLDLFCGTGTIGLTLA--RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK-- 126
+LDL GTG I L LA R + + +P A+S A RNA+ I N +Q D
Sbjct: 113 ILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL 172
Query: 127 IGGDFGNAFPKPDIVISDPNRPGMHMKLIKF 157
G F P + D P + ++F
Sbjct: 173 AGQQFAMIVSNPPYI--DEQDPHLQQGDVRF 201
>pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
pdb|2CWW|B Chain B, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
Length = 382
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
E LD+F G L LA + V + +A+ A NA+LN + N ++ + +
Sbjct: 211 ERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL 270
Query: 129 GDFGNAFPKPDIVISDP 145
+ D+V+ DP
Sbjct: 271 RRLEKEGERFDLVVLDP 287
>pdb|1BOO|A Chain A, Pvuii Dna Methyltransferase (Cytosine-N4-Specific)
Length = 323
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 47 THQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDAC 106
H A KL E + + ++V+D+F G+ T GL R + +E+ P+ ++ +
Sbjct: 232 AHPARFPAKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASA 291
Query: 107 RNAKLNNIS 115
NNIS
Sbjct: 292 FRFLDNNIS 300
>pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
Length = 382
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 34/77 (44%)
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128
E LD+F G L LA + V + +A+ A NA+LN + N ++ + +
Sbjct: 211 ERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL 270
Query: 129 GDFGNAFPKPDIVISDP 145
+ D+V+ DP
Sbjct: 271 RRLEKEGERFDLVVLDP 287
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 71 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAIS-DACRNAK---LNNISNATFVQGDLNK 126
VLDL CG G L YG+EVV IS D R A+ + SN F+ GD K
Sbjct: 42 VLDLACGVGGFSFLLED-----YGFEVVGVDISEDXIRKAREYAKSRESNVEFIVGDARK 96
Query: 127 IG 128
+
Sbjct: 97 LS 98
>pdb|3TLJ|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TLJ|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TM4|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM4|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM5|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
pdb|3TM5|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
Length = 373
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 65 DDGSEIVLDLFCGTGTIGLTLA--RWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQ 121
D GS VLD CG+GTI + LA R+ + G E + + A NA + F+Q
Sbjct: 217 DGGS--VLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQ 274
Query: 122 GDLNKIGG-----DFG-NAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCN 172
GD ++ DF + P + P ++MK L K+ R V+++
Sbjct: 275 GDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLEKRGVFITTE 331
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
Length = 299
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK 126
S+IVL++ CGTG + + L K V ++ + IS+ + +N +GD K
Sbjct: 42 SSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIK 101
Query: 127 IGGDFGNAFPKPDIVISD 144
FPK D+ ++
Sbjct: 102 ------TVFPKFDVCTAN 113
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
++V+D+ CG+G + +A+ K VY + + AI +N NI N ++G
Sbjct: 37 DVVVDVGCGSGGXTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKG 90
>pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu
Length = 336
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN 116
+++V+D+F G G + + K +Y ++ P AI +N KLN + +
Sbjct: 196 NDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLXKNIKLNKLEH 243
>pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys
pdb|2ZZN|B Chain B, The Complex Structure Of Atrm5 And Trnacys
pdb|3AY0|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
pdb|3AY0|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
Length = 336
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN 116
+++V+D+F G G + + K +Y ++ P AI +N KLN + +
Sbjct: 196 NDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEH 243
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 25/146 (17%)
Query: 50 AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDAC 106
A+ L +L + G+R VLD F G+GTI L A + VY ++ + + A
Sbjct: 192 AQALLRLADARPGMR------VLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAR 245
Query: 107 RNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN---RPG-------MHMKLIK 156
A + +S F++ D + FP+ D ++++P R G ++ ++
Sbjct: 246 EAALASGLSWIRFLRADARHL----PRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLR 301
Query: 157 FLLKLKAP--RIVYVSCNPATCARDL 180
L L P R+ ++ PA R L
Sbjct: 302 GALALLPPGGRVALLTLRPALLKRAL 327
>pdb|3C0K|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltranferase
pdb|3C0K|B Chain B, Crystal Structure Of A Ribosomal Rna Methyltranferase
Length = 396
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 71 VLDLFCGTGTIGLT-LARWVKHVYGYEVVPQAISDACRNAKLN--NISNATFVQGDLNKI 127
VL+ F TG ++ L V + +A+ A +N +LN ++S A FV+ D+ K+
Sbjct: 224 VLNCFSYTGGFAVSALXGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL 283
Query: 128 GGDFGNAFPKPDIVISDP 145
+ + K D+++ DP
Sbjct: 284 LRTYRDRGEKFDVIVXDP 301
>pdb|3P9N|A Chain A, Rv2966c Of M. Tuberculosis Is A Rsmd-Like
Methyltransferase
Length = 189
Score = 30.4 bits (67), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 64 RDDGSEIVLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
RD VLDL+ G+G +GL L+R V E ++ + RN + +S AT +G
Sbjct: 41 RDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRG 100
Query: 123 DLNKIGGDFGNAFPKPDIVISDP 145
+ + G P D+V++DP
Sbjct: 101 AVAAV-VAAGTTSPV-DLVLADP 121
>pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
pdb|2YX1|B Chain B, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
Length = 336
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN 116
+++V+D F G G + + K +Y ++ P AI +N KLN + +
Sbjct: 196 NDVVVDXFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEH 243
>pdb|3EGI|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|D Chain D, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
Length = 206
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKI 127
++V+D FCG G + A V ++ P I+ A NA++ I++ F+ GD +
Sbjct: 45 DVVVDAFCGVGGNTIQFALTGXRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL 104
Query: 128 GGDFGNAFPKPDIVISDP 145
+F K D+V P
Sbjct: 105 A-----SFLKADVVFLSP 117
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNK 126
G+E VLD+ G G + A +VK V +++ + A + N +VQGD +
Sbjct: 37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 96
>pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
Length = 241
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKI 127
++V+D FCG G + A V ++ P I+ A NA++ I++ F+ GD +
Sbjct: 80 DVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL 139
Query: 128 GGDFGNAFPKPDIVISDP 145
+F K D+V P
Sbjct: 140 A-----SFLKADVVFLSP 152
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 71 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
VLDL G+G + + + G ++ P + A NAK N + F++G L
Sbjct: 124 VLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLE 177
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 71 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125
VLDL G+G + + + G ++ P + A NAK N + F++G L
Sbjct: 124 VLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLE 177
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 71 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQG 122
VLD+ G G L + +V+ G + + + A A+ + N F QG
Sbjct: 25 VLDIGAGAGHTALAFSPYVQECIGVDATKEXVEVASSFAQEKGVENVRFQQG 76
>pdb|3LBY|A Chain A, Crystal Structure Of Smu.1697c, A Putative
Methyltransferase From Streptococcus Mutans In Complex
With Sah
pdb|3LBY|B Chain B, Crystal Structure Of Smu.1697c, A Putative
Methyltransferase From Streptococcus Mutans In Complex
With Sah
Length = 181
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120
D + I +D G G + L+ K VY ++V QA+ + NI N +
Sbjct: 18 DKNSIAIDATMGNGNDTVFLSHLAKKVYAFDVQEQALIKTREKLEQLNIKNVQLI 72
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 71 VLDLFCGTGTIGLTLARWVKHVYGYEVVPQAI---SDACRNAKLNN 113
+LD+ CG+G I L LA V G ++ +AI A R+ LN
Sbjct: 34 ILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQ 79
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 85 LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121
+++WV Y A ++AK+NN+S T+ Q
Sbjct: 194 VSKWVNREYRQLFTKNQFHQAMKHAKVNNLSTITYEQ 230
>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
pdb|4ILK|B Chain B, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
Length = 359
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 74 LFCGTGTIGLTLARWVKHVYGYE--VVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF 131
L G G IGLT+ + +K VY + +V I + AK + A + +G F
Sbjct: 185 LVYGAGPIGLTIVQVLKGVYNVKNVIVADRIDERLEKAKESGADWA--INNSQTPLGESF 242
Query: 132 GNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAP--RIV 167
KP ++I H ++K + L +P RIV
Sbjct: 243 AEKGIKPTLIIDA----ACHPSILKEAVTLASPAARIV 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,480,629
Number of Sequences: 62578
Number of extensions: 263897
Number of successful extensions: 631
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 46
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)