Query 043853
Match_columns 222
No_of_seqs 158 out of 2677
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02085 meth_trns_rumB 23S r 100.0 1.4E-36 3.1E-41 260.6 25.4 204 3-221 171-374 (374)
2 PRK03522 rumB 23S rRNA methylu 100.0 3.7E-36 8E-41 253.0 25.3 204 3-221 111-314 (315)
3 COG2265 TrmA SAM-dependent met 100.0 1.7E-35 3.7E-40 255.9 21.5 200 2-215 233-432 (432)
4 PRK05031 tRNA (uracil-5-)-meth 100.0 1.4E-34 3E-39 247.3 24.3 192 16-221 154-361 (362)
5 PRK13168 rumA 23S rRNA m(5)U19 100.0 1.3E-34 2.9E-39 253.8 23.8 186 26-222 258-443 (443)
6 PF05958 tRNA_U5-meth_tr: tRNA 100.0 8.2E-35 1.8E-39 247.6 21.7 194 14-221 142-351 (352)
7 TIGR02143 trmA_only tRNA (urac 100.0 7.2E-34 1.6E-38 241.9 24.3 192 16-221 145-352 (353)
8 TIGR00479 rumA 23S rRNA (uraci 100.0 7.4E-34 1.6E-38 248.6 23.4 202 3-214 230-431 (431)
9 KOG2187 tRNA uracil-5-methyltr 100.0 8.4E-31 1.8E-35 224.3 18.0 207 7-215 322-534 (534)
10 PRK10909 rsmD 16S rRNA m(2)G96 99.8 9E-18 2E-22 132.0 18.0 145 16-174 12-162 (199)
11 PRK04338 N(2),N(2)-dimethylgua 99.8 1.6E-18 3.5E-23 148.8 14.1 150 40-211 31-183 (382)
12 PRK15128 23S rRNA m(5)C1962 me 99.8 1.1E-16 2.3E-21 138.2 19.8 150 14-172 168-341 (396)
13 PF05175 MTS: Methyltransferas 99.7 1.2E-16 2.5E-21 123.2 16.5 129 33-172 2-141 (170)
14 TIGR03704 PrmC_rel_meth putati 99.7 1.4E-16 3E-21 130.0 17.7 163 28-206 50-243 (251)
15 PRK11783 rlmL 23S rRNA m(2)G24 99.7 1.7E-16 3.6E-21 146.4 20.0 171 24-214 499-694 (702)
16 COG1092 Predicted SAM-dependen 99.7 1E-16 2.2E-21 136.9 16.3 153 18-179 169-344 (393)
17 TIGR03533 L3_gln_methyl protei 99.7 4.4E-16 9.4E-21 129.3 19.6 137 28-173 85-253 (284)
18 PRK14966 unknown domain/N5-glu 99.7 6.6E-16 1.4E-20 132.5 18.9 146 28-183 218-393 (423)
19 COG2890 HemK Methylase of poly 99.7 9.1E-16 2E-20 126.9 18.8 146 28-184 76-251 (280)
20 TIGR00536 hemK_fam HemK family 99.7 1.2E-15 2.7E-20 126.7 17.9 149 27-183 77-256 (284)
21 COG4123 Predicted O-methyltran 99.7 1.3E-15 2.8E-20 122.3 16.7 139 68-216 45-207 (248)
22 PRK11805 N5-glutamine S-adenos 99.7 2.4E-15 5.3E-20 126.0 19.1 139 28-174 97-266 (307)
23 COG2264 PrmA Ribosomal protein 99.7 8.2E-16 1.8E-20 126.5 15.4 155 31-202 129-287 (300)
24 PF02475 Met_10: Met-10+ like- 99.7 3.3E-16 7.2E-21 122.9 11.9 147 7-167 45-198 (200)
25 TIGR00080 pimt protein-L-isoas 99.7 5.3E-16 1.2E-20 123.9 12.1 170 25-211 37-209 (215)
26 PRK01544 bifunctional N5-gluta 99.7 1.9E-15 4.2E-20 134.4 16.8 150 27-183 78-281 (506)
27 PF03602 Cons_hypoth95: Conser 99.7 6E-16 1.3E-20 120.3 11.5 140 29-173 7-155 (183)
28 PF10672 Methyltrans_SAM: S-ad 99.7 7.2E-16 1.6E-20 127.0 12.4 152 16-177 74-244 (286)
29 PF06325 PrmA: Ribosomal prote 99.7 1.6E-15 3.5E-20 125.7 12.4 152 31-203 128-283 (295)
30 TIGR03534 RF_mod_PrmC protein- 99.7 1.1E-14 2.4E-19 118.6 17.3 146 28-183 53-229 (251)
31 COG2263 Predicted RNA methylas 99.6 5.4E-14 1.2E-18 107.4 18.1 136 45-201 26-166 (198)
32 COG2520 Predicted methyltransf 99.6 7.6E-14 1.7E-18 117.1 20.5 148 8-168 133-286 (341)
33 TIGR00095 RNA methyltransferas 99.6 1.7E-14 3.7E-19 112.9 15.6 140 29-173 15-161 (189)
34 PF12847 Methyltransf_18: Meth 99.6 4.2E-15 9.2E-20 106.3 11.1 100 68-171 2-111 (112)
35 PRK15001 SAM-dependent 23S rib 99.6 4.7E-14 1E-18 120.7 17.9 132 32-173 198-342 (378)
36 COG2242 CobL Precorrin-6B meth 99.6 4.5E-14 9.8E-19 108.1 15.6 130 48-184 16-149 (187)
37 COG0742 N6-adenine-specific me 99.6 3.3E-14 7.1E-19 109.4 14.6 140 29-174 8-157 (187)
38 PRK09328 N5-glutamine S-adenos 99.6 4.9E-14 1.1E-18 116.4 16.6 140 28-176 73-243 (275)
39 PRK14967 putative methyltransf 99.6 7.9E-14 1.7E-18 112.0 17.3 143 30-183 4-172 (223)
40 TIGR00537 hemK_rel_arch HemK-r 99.6 5.4E-14 1.2E-18 109.2 15.5 123 68-205 20-167 (179)
41 COG2813 RsmC 16S RNA G1207 met 99.6 6.5E-14 1.4E-18 114.8 16.4 131 31-172 127-267 (300)
42 TIGR00138 gidB 16S rRNA methyl 99.6 4.3E-14 9.4E-19 109.9 14.4 126 68-205 43-171 (181)
43 PRK00517 prmA ribosomal protei 99.6 7.2E-14 1.6E-18 114.1 16.3 148 31-202 86-237 (250)
44 PF13659 Methyltransf_26: Meth 99.6 9E-15 2E-19 105.4 9.8 102 68-171 1-115 (117)
45 PRK00121 trmB tRNA (guanine-N( 99.6 4.8E-14 1E-18 111.6 14.0 116 67-184 40-169 (202)
46 TIGR00406 prmA ribosomal prote 99.6 8.8E-14 1.9E-18 115.8 16.2 141 31-182 126-270 (288)
47 PRK08287 cobalt-precorrin-6Y C 99.6 1.1E-13 2.4E-18 108.1 15.9 109 54-171 20-131 (187)
48 PF13847 Methyltransf_31: Meth 99.6 2.4E-14 5.3E-19 108.2 11.2 104 67-173 3-112 (152)
49 PRK00107 gidB 16S rRNA methylt 99.6 2.2E-13 4.7E-18 106.3 16.4 135 67-216 45-184 (187)
50 PRK00377 cbiT cobalt-precorrin 99.6 1.7E-13 3.7E-18 108.1 14.8 114 66-183 39-158 (198)
51 PLN02672 methionine S-methyltr 99.6 2.3E-13 5E-18 128.7 17.7 114 27-146 81-212 (1082)
52 TIGR01177 conserved hypothetic 99.6 1.3E-13 2.8E-18 116.9 14.6 118 48-171 165-294 (329)
53 TIGR00091 tRNA (guanine-N(7)-) 99.5 1.9E-13 4E-18 107.5 14.2 116 67-183 16-145 (194)
54 PRK09489 rsmC 16S ribosomal RN 99.5 1.9E-13 4.2E-18 116.0 15.1 130 31-173 165-305 (342)
55 TIGR02469 CbiT precorrin-6Y C5 99.5 4.5E-13 9.8E-18 97.1 14.3 110 55-170 9-121 (124)
56 COG1041 Predicted DNA modifica 99.5 1.2E-13 2.7E-18 115.1 12.3 160 41-221 174-346 (347)
57 PRK14968 putative methyltransf 99.5 7.9E-13 1.7E-17 103.0 15.5 125 67-203 23-173 (188)
58 KOG2904 Predicted methyltransf 99.5 6E-13 1.3E-17 106.8 14.6 114 28-146 110-231 (328)
59 PRK13944 protein-L-isoaspartat 99.5 2E-13 4.3E-18 108.3 11.9 110 54-172 61-174 (205)
60 PF09445 Methyltransf_15: RNA 99.5 7.6E-14 1.6E-18 105.7 9.0 104 69-173 1-123 (163)
61 COG2226 UbiE Methylase involve 99.5 3.7E-13 8E-18 108.0 13.4 99 67-169 51-154 (238)
62 COG2518 Pcm Protein-L-isoaspar 99.5 5.8E-13 1.2E-17 104.1 13.1 110 54-172 61-170 (209)
63 PRK00312 pcm protein-L-isoaspa 99.5 5.8E-13 1.3E-17 106.1 13.2 142 54-211 67-208 (212)
64 PRK11207 tellurite resistance 99.5 6.2E-13 1.3E-17 104.8 12.9 96 68-168 31-131 (197)
65 PF01170 UPF0020: Putative RNA 99.5 1.1E-13 2.3E-18 107.5 8.4 127 47-180 10-159 (179)
66 PLN02781 Probable caffeoyl-CoA 99.5 9.1E-13 2E-17 106.5 13.9 103 68-170 69-177 (234)
67 PRK13942 protein-L-isoaspartat 99.5 1.2E-12 2.6E-17 104.4 14.0 112 53-173 64-178 (212)
68 smart00650 rADc Ribosomal RNA 99.5 4.5E-12 9.8E-17 97.5 16.6 98 67-171 13-113 (169)
69 PRK07402 precorrin-6B methylas 99.5 5.5E-12 1.2E-16 99.3 17.4 111 56-173 31-144 (196)
70 PF01209 Ubie_methyltran: ubiE 99.5 4.3E-13 9.4E-18 108.2 10.3 98 67-168 47-150 (233)
71 TIGR00446 nop2p NOL1/NOP2/sun 99.5 1.5E-12 3.3E-17 107.1 13.7 80 66-149 70-152 (264)
72 PRK11036 putative S-adenosyl-L 99.5 1.7E-12 3.7E-17 106.3 13.8 102 66-170 43-148 (255)
73 TIGR00477 tehB tellurite resis 99.5 1.2E-12 2.6E-17 103.1 12.2 95 68-168 31-130 (195)
74 PLN02396 hexaprenyldihydroxybe 99.5 8.7E-12 1.9E-16 105.0 18.0 100 67-171 131-235 (322)
75 PRK11727 23S rRNA mA1618 methy 99.5 9.4E-13 2E-17 110.4 11.9 123 25-148 66-200 (321)
76 TIGR00308 TRM1 tRNA(guanine-26 99.4 2.1E-12 4.5E-17 110.7 14.1 138 29-171 2-147 (374)
77 COG2227 UbiG 2-polyprenyl-3-me 99.4 6.2E-13 1.3E-17 105.4 9.9 100 67-172 59-162 (243)
78 PLN02244 tocopherol O-methyltr 99.4 4.2E-12 9E-17 108.2 15.7 100 67-171 118-223 (340)
79 TIGR02752 MenG_heptapren 2-hep 99.4 5.8E-12 1.2E-16 101.5 15.5 101 67-171 45-151 (231)
80 PLN02476 O-methyltransferase 99.4 2.9E-12 6.3E-17 105.2 13.8 103 68-170 119-227 (278)
81 PRK14121 tRNA (guanine-N(7)-)- 99.4 2.4E-12 5.2E-17 110.0 13.6 112 67-180 122-244 (390)
82 PRK04266 fibrillarin; Provisio 99.4 1.8E-11 3.9E-16 98.3 17.7 102 66-170 71-175 (226)
83 KOG1271 Methyltransferases [Ge 99.4 9.1E-12 2E-16 94.5 14.9 155 41-207 41-209 (227)
84 PF01135 PCMT: Protein-L-isoas 99.4 7.6E-13 1.6E-17 104.9 9.1 161 31-211 43-206 (209)
85 PTZ00338 dimethyladenosine tra 99.4 2E-11 4.3E-16 101.7 17.9 101 51-159 22-123 (294)
86 PRK14901 16S rRNA methyltransf 99.4 6.1E-12 1.3E-16 110.5 15.5 84 66-149 251-337 (434)
87 PRK14902 16S rRNA methyltransf 99.4 7.4E-12 1.6E-16 110.3 15.8 80 67-149 250-332 (444)
88 PF01596 Methyltransf_3: O-met 99.4 2.1E-12 4.5E-17 102.1 10.9 104 68-171 46-155 (205)
89 PRK12335 tellurite resistance 99.4 3.6E-12 7.8E-17 106.2 12.4 96 68-169 121-221 (287)
90 PRK15451 tRNA cmo(5)U34 methyl 99.4 4.1E-12 8.9E-17 103.6 12.5 99 67-171 56-164 (247)
91 PRK14904 16S rRNA methyltransf 99.4 5.1E-12 1.1E-16 111.3 14.0 79 66-149 249-330 (445)
92 PRK14903 16S rRNA methyltransf 99.4 1E-11 2.2E-16 108.8 15.2 81 66-149 236-319 (431)
93 PLN02233 ubiquinone biosynthes 99.4 1.5E-11 3.3E-16 101.0 14.4 100 67-171 73-182 (261)
94 PF02353 CMAS: Mycolic acid cy 99.4 8.1E-12 1.7E-16 103.0 12.7 107 55-171 52-166 (273)
95 PF03848 TehB: Tellurite resis 99.4 6.1E-12 1.3E-16 98.0 11.0 98 68-171 31-133 (192)
96 PRK10901 16S rRNA methyltransf 99.4 2.6E-11 5.6E-16 106.3 15.9 81 66-149 243-325 (427)
97 PRK10258 biotin biosynthesis p 99.4 1.8E-11 4E-16 99.9 13.3 97 67-172 42-141 (251)
98 TIGR01983 UbiG ubiquinone bios 99.3 8.2E-11 1.8E-15 94.3 16.3 130 39-171 15-149 (224)
99 PRK14896 ksgA 16S ribosomal RN 99.3 2.1E-11 4.6E-16 100.0 13.0 90 51-150 15-104 (258)
100 PHA03412 putative methyltransf 99.3 1.2E-11 2.6E-16 98.7 10.9 69 68-146 50-123 (241)
101 TIGR00740 methyltransferase, p 99.3 3.4E-11 7.4E-16 97.6 13.8 99 67-171 53-161 (239)
102 PRK00274 ksgA 16S ribosomal RN 99.3 1.1E-10 2.4E-15 96.5 16.5 96 54-159 31-126 (272)
103 PRK13943 protein-L-isoaspartat 99.3 3.4E-11 7.4E-16 101.3 13.7 107 56-171 71-180 (322)
104 PRK14103 trans-aconitate 2-met 99.3 1.5E-11 3.2E-16 100.7 11.3 93 67-171 29-126 (255)
105 PRK05134 bifunctional 3-demeth 99.3 5.5E-11 1.2E-15 96.0 14.4 129 38-172 21-152 (233)
106 PLN02585 magnesium protoporphy 99.3 5.1E-11 1.1E-15 100.1 14.2 103 67-178 144-256 (315)
107 COG4122 Predicted O-methyltran 99.3 7.6E-11 1.6E-15 93.4 14.2 116 49-171 46-166 (219)
108 COG2519 GCD14 tRNA(1-methylade 99.3 5.4E-11 1.2E-15 95.2 13.3 125 50-184 79-209 (256)
109 PF02390 Methyltransf_4: Putat 99.3 2.8E-11 6.1E-16 95.1 11.5 117 67-184 17-146 (195)
110 KOG3420 Predicted RNA methylas 99.3 1E-11 2.2E-16 90.7 8.3 110 43-159 26-140 (185)
111 TIGR02021 BchM-ChlM magnesium 99.3 1E-10 2.3E-15 93.5 15.0 71 67-144 55-126 (219)
112 PRK01683 trans-aconitate 2-met 99.3 4.2E-11 9E-16 98.2 12.9 95 67-171 31-130 (258)
113 COG2230 Cfa Cyclopropane fatty 99.3 6.9E-11 1.5E-15 96.8 13.9 107 55-171 62-176 (283)
114 COG0116 Predicted N6-adenine-s 99.3 2.6E-11 5.6E-16 102.7 11.4 95 47-147 173-309 (381)
115 PRK11873 arsM arsenite S-adeno 99.3 4.3E-11 9.4E-16 98.8 12.6 101 67-171 77-183 (272)
116 PTZ00146 fibrillarin; Provisio 99.3 2.3E-10 5E-15 94.3 16.2 143 66-221 131-288 (293)
117 PRK04457 spermidine synthase; 99.3 1.4E-10 3.1E-15 95.3 14.9 115 67-184 66-192 (262)
118 PLN02589 caffeoyl-CoA O-methyl 99.3 1.3E-10 2.8E-15 94.3 13.8 103 68-170 80-189 (247)
119 TIGR00563 rsmB ribosomal RNA s 99.3 2.1E-10 4.5E-15 100.6 15.6 82 66-149 237-321 (426)
120 KOG2730 Methylase [General fun 99.3 1.4E-11 3E-16 96.1 7.0 111 35-150 66-178 (263)
121 PF08704 GCD14: tRNA methyltra 99.3 2.2E-10 4.9E-15 92.7 14.1 138 50-200 25-168 (247)
122 KOG1270 Methyltransferases [Co 99.2 1.7E-11 3.7E-16 98.1 7.2 96 68-171 90-195 (282)
123 COG0220 Predicted S-adenosylme 99.2 1.8E-10 3.8E-15 92.3 13.0 115 68-183 49-177 (227)
124 PLN03075 nicotianamine synthas 99.2 1.2E-09 2.6E-14 90.4 17.8 142 67-221 123-274 (296)
125 TIGR00452 methyltransferase, p 99.2 4.3E-10 9.4E-15 94.4 15.0 99 67-171 121-225 (314)
126 PF08241 Methyltransf_11: Meth 99.2 2E-11 4.2E-16 84.1 5.7 91 72-169 1-95 (95)
127 PTZ00098 phosphoethanolamine N 99.2 1.5E-10 3.4E-15 95.2 11.8 98 67-171 52-156 (263)
128 PRK11783 rlmL 23S rRNA m(2)G24 99.2 2.1E-10 4.6E-15 106.2 13.8 130 48-180 172-356 (702)
129 PF13649 Methyltransf_25: Meth 99.2 4.8E-11 1E-15 83.9 7.3 68 71-143 1-73 (101)
130 PRK15068 tRNA mo(5)U34 methylt 99.2 4E-10 8.7E-15 95.2 13.9 99 67-171 122-226 (322)
131 TIGR00755 ksgA dimethyladenosi 99.2 1.8E-10 3.8E-15 94.3 11.4 95 54-159 18-115 (253)
132 PF05401 NodS: Nodulation prot 99.2 6E-11 1.3E-15 91.8 8.0 98 67-171 43-146 (201)
133 KOG3191 Predicted N6-DNA-methy 99.2 1.2E-09 2.6E-14 83.0 14.1 120 68-200 44-190 (209)
134 PRK00811 spermidine synthase; 99.2 7.5E-10 1.6E-14 92.0 14.3 102 67-171 76-191 (283)
135 smart00828 PKS_MT Methyltransf 99.2 2.5E-10 5.5E-15 91.5 11.1 98 69-171 1-104 (224)
136 PLN02336 phosphoethanolamine N 99.2 4.3E-10 9.4E-15 100.0 13.6 99 67-171 266-369 (475)
137 TIGR03587 Pse_Me-ase pseudamin 99.2 4.1E-10 9E-15 89.2 12.0 69 67-145 43-113 (204)
138 PLN02490 MPBQ/MSBQ methyltrans 99.2 1.3E-09 2.9E-14 92.2 15.8 112 51-171 98-215 (340)
139 TIGR02072 BioC biotin biosynth 99.2 6.4E-10 1.4E-14 89.5 13.3 96 68-171 35-135 (240)
140 PHA03411 putative methyltransf 99.2 1.2E-10 2.7E-15 95.0 8.6 70 68-147 65-136 (279)
141 PRK07580 Mg-protoporphyrin IX 99.2 1.3E-09 2.8E-14 87.6 14.5 95 67-168 63-162 (230)
142 TIGR03840 TMPT_Se_Te thiopurin 99.2 1.9E-10 4E-15 91.7 9.2 100 67-170 34-151 (213)
143 PRK11088 rrmA 23S rRNA methylt 99.1 9.7E-10 2.1E-14 90.9 13.3 94 67-173 85-183 (272)
144 COG4106 Tam Trans-aconitate me 99.1 3E-10 6.5E-15 88.6 9.1 95 67-171 30-129 (257)
145 cd02440 AdoMet_MTases S-adenos 99.1 1E-09 2.2E-14 75.8 10.7 98 70-170 1-103 (107)
146 PRK06922 hypothetical protein; 99.1 5.3E-10 1.1E-14 100.7 11.4 102 67-171 418-537 (677)
147 PRK11705 cyclopropane fatty ac 99.1 1.3E-09 2.7E-14 94.3 13.3 105 55-171 157-267 (383)
148 PF07021 MetW: Methionine bios 99.1 6.9E-10 1.5E-14 85.7 10.5 88 66-162 12-102 (193)
149 PRK04148 hypothetical protein; 99.1 1.7E-09 3.7E-14 79.2 12.0 104 53-168 4-108 (134)
150 PRK01581 speE spermidine synth 99.1 2.6E-09 5.6E-14 90.5 14.5 103 67-172 150-269 (374)
151 PRK08317 hypothetical protein; 99.1 3E-09 6.4E-14 85.6 14.0 110 54-171 8-124 (241)
152 PRK00216 ubiE ubiquinone/menaq 99.1 3.6E-09 7.7E-14 85.3 13.8 100 67-170 51-157 (239)
153 COG0030 KsgA Dimethyladenosine 99.1 1.5E-08 3.3E-13 82.2 17.2 102 51-160 16-117 (259)
154 PF02384 N6_Mtase: N-6 DNA Met 99.1 3.1E-09 6.6E-14 89.5 13.7 166 40-222 26-233 (311)
155 PRK03612 spermidine synthase; 99.1 2.7E-09 5.9E-14 95.7 13.4 103 67-172 297-416 (521)
156 PRK13255 thiopurine S-methyltr 99.1 8.7E-10 1.9E-14 88.1 9.1 98 67-168 37-152 (218)
157 PLN02366 spermidine synthase 99.1 7.1E-09 1.5E-13 86.9 14.7 103 67-171 91-206 (308)
158 PRK05785 hypothetical protein; 99.1 2.9E-09 6.3E-14 85.7 12.0 84 68-164 52-140 (226)
159 PLN02336 phosphoethanolamine N 99.1 7.5E-10 1.6E-14 98.5 9.3 100 67-170 37-141 (475)
160 TIGR02987 met_A_Alw26 type II 99.1 1.5E-08 3.3E-13 91.2 17.8 108 40-148 4-123 (524)
161 PF08242 Methyltransf_12: Meth 99.0 4E-11 8.8E-16 83.8 0.8 94 72-167 1-99 (99)
162 KOG1540 Ubiquinone biosynthesi 99.0 7.9E-09 1.7E-13 82.6 13.8 101 64-168 97-211 (296)
163 TIGR00417 speE spermidine synt 99.0 8.4E-09 1.8E-13 85.2 14.6 102 67-171 72-186 (270)
164 smart00138 MeTrc Methyltransfe 99.0 2.6E-09 5.7E-14 87.9 11.5 132 35-171 66-242 (264)
165 PF10294 Methyltransf_16: Puta 99.0 1.7E-09 3.7E-14 83.5 9.7 122 49-172 23-157 (173)
166 KOG1499 Protein arginine N-met 99.0 1.4E-09 3.1E-14 90.6 9.6 98 68-170 61-166 (346)
167 TIGR02716 C20_methyl_CrtF C-20 99.0 7.9E-09 1.7E-13 86.9 13.5 98 67-171 149-254 (306)
168 PRK11933 yebU rRNA (cytosine-C 99.0 1.5E-08 3.2E-13 89.4 15.1 82 65-149 111-195 (470)
169 TIGR00438 rrmJ cell division p 99.0 2.6E-08 5.6E-13 77.9 14.9 106 67-183 32-159 (188)
170 PF05724 TPMT: Thiopurine S-me 99.0 1.6E-08 3.4E-13 80.9 13.8 143 67-221 37-217 (218)
171 PRK11188 rrmJ 23S rRNA methylt 99.0 1.8E-08 3.9E-13 80.1 13.9 104 67-183 51-178 (209)
172 PRK10742 putative methyltransf 99.0 1.6E-08 3.5E-13 81.4 13.4 91 55-148 76-175 (250)
173 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 1.5E-08 3.4E-13 80.7 13.4 98 67-171 39-143 (223)
174 PF05971 Methyltransf_10: Prot 99.0 6.5E-09 1.4E-13 86.1 11.0 120 27-147 59-187 (299)
175 KOG0820 Ribosomal RNA adenine 99.0 7.1E-09 1.5E-13 83.6 10.4 108 32-151 29-137 (315)
176 KOG1663 O-methyltransferase [S 98.9 1.4E-08 2.9E-13 80.2 11.3 104 68-171 74-183 (237)
177 TIGR03438 probable methyltrans 98.9 3.5E-08 7.5E-13 82.8 14.6 106 67-172 63-178 (301)
178 PRK01544 bifunctional N5-gluta 98.9 2E-08 4.2E-13 89.9 13.5 115 65-181 345-472 (506)
179 PF13489 Methyltransf_23: Meth 98.9 1.1E-08 2.4E-13 77.3 9.6 104 55-173 11-117 (161)
180 PRK06202 hypothetical protein; 98.9 9.9E-09 2.2E-13 82.8 9.3 95 67-168 60-164 (232)
181 COG2521 Predicted archaeal met 98.9 4.6E-09 1E-13 82.9 6.8 106 64-171 131-245 (287)
182 KOG2915 tRNA(1-methyladenosine 98.9 8.2E-08 1.8E-12 77.5 13.9 126 54-184 94-224 (314)
183 PLN02823 spermine synthase 98.9 9.4E-08 2E-12 81.0 14.2 103 67-172 103-221 (336)
184 PF05185 PRMT5: PRMT5 arginine 98.8 3.6E-08 7.7E-13 86.7 11.8 96 68-168 187-294 (448)
185 PRK00050 16S rRNA m(4)C1402 me 98.8 2.3E-08 5E-13 83.1 9.8 77 67-145 19-98 (296)
186 COG0144 Sun tRNA and rRNA cyto 98.8 7.5E-08 1.6E-12 82.4 12.9 84 64-148 153-240 (355)
187 KOG1500 Protein arginine N-met 98.8 4.4E-08 9.5E-13 81.2 10.3 98 67-170 177-281 (517)
188 PF02005 TRM: N2,N2-dimethylgu 98.8 2.4E-08 5.3E-13 85.9 9.2 129 38-171 17-154 (377)
189 TIGR02081 metW methionine bios 98.8 5.3E-08 1.2E-12 76.5 10.4 71 67-146 13-84 (194)
190 KOG1661 Protein-L-isoaspartate 98.8 9.8E-08 2.1E-12 74.3 11.1 151 48-214 67-231 (237)
191 PF08003 Methyltransf_9: Prote 98.8 1.8E-07 3.9E-12 77.2 12.8 100 66-171 114-219 (315)
192 COG4076 Predicted RNA methylas 98.8 1.6E-08 3.5E-13 77.3 6.2 72 68-145 33-104 (252)
193 KOG1541 Predicted protein carb 98.8 3.6E-08 7.9E-13 77.3 8.1 84 54-145 37-120 (270)
194 PRK13256 thiopurine S-methyltr 98.8 1.4E-07 3.1E-12 75.5 11.6 99 67-168 43-160 (226)
195 KOG4300 Predicted methyltransf 98.7 2.3E-07 5.1E-12 72.1 11.4 103 68-173 77-184 (252)
196 KOG2078 tRNA modification enzy 98.7 3.8E-08 8.3E-13 83.8 6.6 121 2-128 188-312 (495)
197 KOG2361 Predicted methyltransf 98.7 4.3E-08 9.3E-13 77.8 6.4 138 29-171 37-183 (264)
198 KOG2899 Predicted methyltransf 98.7 2.1E-07 4.6E-12 74.0 10.1 46 67-112 58-105 (288)
199 PF00398 RrnaAD: Ribosomal RNA 98.7 2E-07 4.3E-12 76.7 10.0 105 50-160 15-119 (262)
200 COG3963 Phospholipid N-methylt 98.6 6.8E-07 1.5E-11 67.3 11.4 123 40-173 27-159 (194)
201 KOG1227 Putative methyltransfe 98.6 8.8E-08 1.9E-12 78.2 6.7 144 15-172 147-298 (351)
202 PF04816 DUF633: Family of unk 98.6 1.7E-06 3.6E-11 68.5 13.5 116 71-203 1-124 (205)
203 COG4976 Predicted methyltransf 98.6 4.3E-08 9.3E-13 77.3 3.8 97 68-171 126-225 (287)
204 COG1867 TRM1 N2,N2-dimethylgua 98.6 1.8E-06 4E-11 72.7 13.4 125 40-171 27-154 (380)
205 TIGR00478 tly hemolysin TlyA f 98.6 4.7E-07 1E-11 72.8 9.3 38 67-104 75-113 (228)
206 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.6 5.3E-07 1.2E-11 74.9 10.0 83 65-149 83-168 (283)
207 PF13679 Methyltransf_32: Meth 98.5 2.8E-06 6E-11 63.3 12.2 119 50-173 6-135 (141)
208 COG0421 SpeE Spermidine syntha 98.5 8.3E-06 1.8E-10 67.5 14.9 102 68-172 77-191 (282)
209 PF01564 Spermine_synth: Sperm 98.4 1.5E-06 3.3E-11 70.8 9.6 103 67-171 76-191 (246)
210 PF03291 Pox_MCEL: mRNA cappin 98.4 9.1E-07 2E-11 75.0 8.6 106 67-172 62-187 (331)
211 COG3897 Predicted methyltransf 98.4 6.2E-07 1.4E-11 69.2 6.8 105 53-167 67-174 (218)
212 KOG2671 Putative RNA methylase 98.4 2E-07 4.3E-12 77.5 3.7 97 46-147 189-294 (421)
213 TIGR01444 fkbM_fam methyltrans 98.4 8.8E-07 1.9E-11 65.8 6.8 58 70-127 1-60 (143)
214 PF08123 DOT1: Histone methyla 98.4 3.7E-06 8E-11 66.5 10.3 112 54-171 31-157 (205)
215 COG3129 Predicted SAM-dependen 98.4 2.2E-06 4.8E-11 67.8 8.2 123 25-147 32-163 (292)
216 KOG3010 Methyltransferase [Gen 98.3 1.1E-06 2.4E-11 69.9 5.9 92 69-165 35-130 (261)
217 PF12147 Methyltransf_20: Puta 98.3 4.6E-05 1E-09 62.6 14.9 104 67-171 135-249 (311)
218 COG4262 Predicted spermidine s 98.3 1.6E-05 3.4E-10 67.1 11.4 103 67-172 289-408 (508)
219 cd00315 Cyt_C5_DNA_methylase C 98.3 4.1E-06 8.8E-11 69.4 8.1 91 70-168 2-109 (275)
220 KOG1975 mRNA cap methyltransfe 98.3 3.2E-06 6.9E-11 70.0 7.1 119 53-171 102-237 (389)
221 KOG1122 tRNA and rRNA cytosine 98.2 9.1E-06 2E-10 69.5 9.7 85 63-149 237-324 (460)
222 PF01269 Fibrillarin: Fibrilla 98.2 8E-05 1.7E-09 59.0 14.1 142 66-220 72-228 (229)
223 COG2384 Predicted SAM-dependen 98.2 0.00012 2.6E-09 57.8 14.4 117 68-201 17-141 (226)
224 PF05219 DREV: DREV methyltran 98.1 1.8E-05 3.9E-10 64.0 9.1 92 67-171 94-188 (265)
225 TIGR00006 S-adenosyl-methyltra 98.1 2.6E-05 5.6E-10 65.1 10.1 78 67-145 20-100 (305)
226 COG0357 GidB Predicted S-adeno 98.1 9.2E-05 2E-09 58.8 12.4 92 68-166 68-163 (215)
227 KOG3115 Methyltransferase-like 98.1 1.6E-05 3.5E-10 61.8 7.7 111 68-178 61-190 (249)
228 PF02527 GidB: rRNA small subu 98.1 7.3E-05 1.6E-09 58.2 11.5 99 68-173 49-150 (184)
229 PF00145 DNA_methylase: C-5 cy 98.1 1.3E-05 2.8E-10 67.5 7.8 91 70-169 2-109 (335)
230 PF06080 DUF938: Protein of un 98.1 3.1E-05 6.6E-10 60.8 8.8 103 69-171 27-141 (204)
231 COG0286 HsdM Type I restrictio 98.0 2.3E-05 5E-10 70.0 8.6 93 53-147 174-274 (489)
232 PRK11524 putative methyltransf 98.0 1.6E-05 3.5E-10 66.2 6.9 46 66-111 207-252 (284)
233 PF00891 Methyltransf_2: O-met 98.0 8.6E-05 1.9E-09 60.2 10.7 91 67-171 100-199 (241)
234 PF01555 N6_N4_Mtase: DNA meth 98.0 1.2E-05 2.7E-10 64.0 5.6 42 66-107 190-231 (231)
235 PRK00536 speE spermidine synth 98.0 0.00014 3.1E-09 59.6 11.6 97 66-172 71-172 (262)
236 PF01861 DUF43: Protein of unk 98.0 0.00085 1.8E-08 53.9 15.5 126 67-203 44-178 (243)
237 PF04445 SAM_MT: Putative SAM- 97.9 4.5E-05 9.7E-10 61.2 7.7 88 55-145 63-159 (234)
238 PF13578 Methyltransf_24: Meth 97.9 2.6E-06 5.7E-11 60.1 0.4 96 72-170 1-104 (106)
239 KOG1253 tRNA methyltransferase 97.9 1.5E-05 3.3E-10 69.5 5.0 102 68-171 110-216 (525)
240 COG1889 NOP1 Fibrillarin-like 97.9 0.0022 4.9E-08 50.1 15.9 144 63-219 72-229 (231)
241 COG0270 Dcm Site-specific DNA 97.9 0.00012 2.6E-09 62.2 9.7 95 68-168 3-114 (328)
242 TIGR00675 dcm DNA-methyltransf 97.8 9.6E-05 2.1E-09 62.5 8.7 89 71-168 1-106 (315)
243 PRK13699 putative methylase; P 97.8 6.1E-05 1.3E-09 60.6 7.1 47 66-112 162-208 (227)
244 COG1352 CheR Methylase of chem 97.8 0.00021 4.6E-09 58.8 10.3 134 34-172 63-242 (268)
245 PF05891 Methyltransf_PK: AdoM 97.8 6.7E-05 1.4E-09 59.3 6.5 136 67-210 55-208 (218)
246 TIGR03439 methyl_EasF probable 97.8 0.00067 1.5E-08 57.3 12.5 130 40-172 51-198 (319)
247 COG1189 Predicted rRNA methyla 97.8 0.0016 3.5E-08 52.2 13.8 156 49-221 63-242 (245)
248 PF11599 AviRa: RRNA methyltra 97.8 9.5E-05 2.1E-09 58.1 6.7 122 47-170 33-213 (246)
249 PRK11760 putative 23S rRNA C24 97.8 0.00011 2.3E-09 62.1 7.4 70 66-146 210-279 (357)
250 PLN02232 ubiquinone biosynthes 97.7 0.00015 3.2E-09 55.2 7.7 73 93-170 1-80 (160)
251 PRK10458 DNA cytosine methylas 97.7 0.0022 4.9E-08 56.9 16.0 77 68-146 88-178 (467)
252 PRK10611 chemotaxis methyltran 97.7 0.00015 3.2E-09 60.3 7.8 129 34-171 88-262 (287)
253 PF01739 CheR: CheR methyltran 97.6 9.2E-05 2E-09 58.2 5.2 127 40-171 3-175 (196)
254 PF01728 FtsJ: FtsJ-like methy 97.6 0.00016 3.4E-09 56.0 5.4 68 67-145 23-99 (181)
255 PHA01634 hypothetical protein 97.5 0.00055 1.2E-08 49.5 7.1 72 67-145 28-100 (156)
256 PF09243 Rsm22: Mitochondrial 97.4 0.003 6.6E-08 52.3 12.0 109 68-180 34-149 (274)
257 PF06962 rRNA_methylase: Putat 97.4 0.0029 6.3E-08 46.8 10.2 109 91-205 1-127 (140)
258 KOG2912 Predicted DNA methylas 97.4 0.00057 1.2E-08 56.8 6.4 117 29-146 62-187 (419)
259 PF03059 NAS: Nicotianamine sy 97.3 0.0094 2E-07 49.2 12.9 99 68-170 121-229 (276)
260 KOG4058 Uncharacterized conser 97.3 0.0017 3.7E-08 48.2 7.6 98 67-172 72-172 (199)
261 PF03141 Methyltransf_29: Puta 97.2 0.001 2.2E-08 58.6 7.1 132 28-174 78-222 (506)
262 PF01795 Methyltransf_5: MraW 97.2 0.00056 1.2E-08 57.3 5.1 78 67-145 20-101 (310)
263 KOG1501 Arginine N-methyltrans 97.2 0.0011 2.5E-08 57.3 6.9 60 68-127 67-128 (636)
264 COG0293 FtsJ 23S rRNA methylas 97.2 0.014 3E-07 46.0 12.0 69 67-146 45-120 (205)
265 COG0275 Predicted S-adenosylme 97.1 0.0048 1E-07 51.2 9.7 88 55-145 13-104 (314)
266 KOG3201 Uncharacterized conser 97.0 0.0013 2.8E-08 49.6 4.9 125 68-202 30-165 (201)
267 TIGR00497 hsdM type I restrict 97.0 0.064 1.4E-06 48.3 16.6 79 67-147 217-303 (501)
268 PF07091 FmrO: Ribosomal RNA m 97.0 0.0033 7.1E-08 50.9 7.4 71 67-143 105-177 (251)
269 COG0500 SmtA SAM-dependent met 97.0 0.015 3.2E-07 42.1 10.6 99 71-172 52-156 (257)
270 KOG2940 Predicted methyltransf 97.0 0.0028 6.2E-08 50.5 6.7 95 68-168 73-171 (325)
271 PF05148 Methyltransf_8: Hypot 97.0 0.0062 1.3E-07 48.0 8.5 111 67-202 72-184 (219)
272 KOG3045 Predicted RNA methylas 97.0 0.0033 7.2E-08 51.0 7.1 82 67-171 180-264 (325)
273 PF07757 AdoMet_MTase: Predict 96.8 0.0016 3.5E-08 45.6 3.4 61 37-99 30-90 (112)
274 KOG2198 tRNA cytosine-5-methyl 96.6 0.023 5E-07 48.4 10.0 81 66-146 154-245 (375)
275 COG1568 Predicted methyltransf 96.6 0.011 2.4E-07 48.5 7.5 104 67-173 152-262 (354)
276 PF10354 DUF2431: Domain of un 96.4 0.05 1.1E-06 41.6 10.0 128 74-208 3-159 (166)
277 KOG1596 Fibrillarin and relate 96.4 0.035 7.5E-07 44.8 9.0 102 66-171 155-261 (317)
278 PF07279 DUF1442: Protein of u 96.3 0.18 3.9E-06 40.0 12.6 112 55-173 31-150 (218)
279 PF02254 TrkA_N: TrkA-N domain 96.2 0.032 6.9E-07 39.5 7.5 100 76-182 4-107 (116)
280 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.2 0.088 1.9E-06 43.1 10.6 117 55-171 44-199 (256)
281 KOG2793 Putative N2,N2-dimethy 96.0 0.074 1.6E-06 43.3 9.4 104 68-173 87-201 (248)
282 PF04672 Methyltransf_19: S-ad 96.0 0.13 2.9E-06 42.2 10.9 104 68-171 69-190 (267)
283 KOG1269 SAM-dependent methyltr 95.9 0.032 6.9E-07 48.1 7.1 100 67-170 110-214 (364)
284 COG0863 DNA modification methy 95.7 0.045 9.7E-07 45.5 7.2 47 66-112 221-267 (302)
285 COG2961 ComJ Protein involved 95.4 0.82 1.8E-05 37.1 13.0 87 72-160 93-181 (279)
286 KOG1562 Spermidine synthase [A 95.3 0.12 2.7E-06 42.9 8.3 106 65-172 119-237 (337)
287 KOG1709 Guanidinoacetate methy 95.2 0.35 7.7E-06 38.5 10.0 102 67-172 101-206 (271)
288 PF02086 MethyltransfD12: D12 95.1 0.043 9.3E-07 44.7 5.1 57 53-111 8-64 (260)
289 KOG2651 rRNA adenine N-6-methy 95.1 0.14 2.9E-06 44.1 8.0 58 51-110 139-197 (476)
290 PF04989 CmcI: Cephalosporin h 95.1 0.19 4E-06 39.8 8.3 101 68-171 33-147 (206)
291 KOG3178 Hydroxyindole-O-methyl 95.1 0.14 3E-06 43.4 8.0 93 68-171 178-275 (342)
292 KOG2352 Predicted spermine/spe 94.8 0.04 8.7E-07 48.6 4.5 113 68-180 296-427 (482)
293 PRK13699 putative methylase; P 94.7 0.15 3.2E-06 41.1 7.1 56 117-174 2-75 (227)
294 KOG3987 Uncharacterized conser 94.7 0.006 1.3E-07 48.0 -0.9 43 66-108 111-153 (288)
295 PRK03659 glutathione-regulated 94.5 0.23 4.9E-06 45.9 8.7 98 70-176 402-503 (601)
296 KOG2360 Proliferation-associat 94.5 0.1 2.2E-06 44.8 5.9 80 65-146 211-293 (413)
297 KOG0821 Predicted ribosomal RN 94.2 0.63 1.4E-05 37.3 9.3 104 67-171 50-165 (326)
298 PRK11524 putative methyltransf 93.9 0.22 4.9E-06 41.4 6.8 60 116-177 8-86 (284)
299 PF07942 N2227: N2227-like pro 93.7 0.28 6.1E-06 40.5 6.9 41 67-107 56-96 (270)
300 PF03686 UPF0146: Uncharacteri 93.5 0.74 1.6E-05 33.4 8.0 84 68-165 14-98 (127)
301 PF10237 N6-adenineMlase: Prob 93.5 1.5 3.2E-05 33.4 10.0 119 47-183 9-134 (162)
302 PRK10669 putative cation:proto 93.4 0.55 1.2E-05 42.9 9.1 95 70-173 419-517 (558)
303 PF11968 DUF3321: Putative met 93.3 0.23 4.9E-06 39.5 5.5 102 48-166 30-139 (219)
304 KOG0024 Sorbitol dehydrogenase 93.3 0.77 1.7E-05 38.8 8.8 97 67-171 169-273 (354)
305 PRK01747 mnmC bifunctional tRN 93.3 0.72 1.6E-05 43.1 9.7 102 68-172 58-207 (662)
306 KOG0822 Protein kinase inhibit 93.3 0.27 6E-06 44.0 6.5 96 68-168 368-475 (649)
307 PRK03562 glutathione-regulated 93.1 0.6 1.3E-05 43.3 8.8 98 69-173 401-500 (621)
308 PF04378 RsmJ: Ribosomal RNA s 92.9 0.24 5.2E-06 40.3 5.3 86 72-159 62-149 (245)
309 COG1064 AdhP Zn-dependent alco 92.7 1.5 3.2E-05 37.5 9.9 95 66-173 165-261 (339)
310 KOG2352 Predicted spermine/spe 91.4 1.9 4.1E-05 38.4 9.3 71 70-145 51-122 (482)
311 COG1255 Uncharacterized protei 91.4 1.4 3.1E-05 31.4 6.9 82 68-163 14-96 (129)
312 KOG3924 Putative protein methy 91.4 0.88 1.9E-05 39.4 7.1 115 54-172 181-308 (419)
313 PF05711 TylF: Macrocin-O-meth 91.1 1.1 2.3E-05 36.6 7.1 131 47-184 56-226 (248)
314 KOG2920 Predicted methyltransf 90.9 0.19 4.1E-06 41.5 2.5 36 67-102 116-152 (282)
315 PRK09496 trkA potassium transp 90.7 8 0.00017 34.1 12.9 75 67-148 230-308 (453)
316 PRK06035 3-hydroxyacyl-CoA deh 90.3 8.7 0.00019 31.9 12.2 42 69-110 4-47 (291)
317 PF07669 Eco57I: Eco57I restri 89.7 4.3 9.3E-05 28.4 8.4 79 137-222 2-103 (106)
318 PF02636 Methyltransf_28: Puta 89.4 0.42 9.1E-06 39.0 3.5 44 68-111 19-72 (252)
319 KOG4589 Cell division protein 89.3 0.56 1.2E-05 36.6 3.8 70 66-146 68-145 (232)
320 PRK07066 3-hydroxybutyryl-CoA 89.2 13 0.00028 31.6 12.9 92 69-168 8-115 (321)
321 PRK09496 trkA potassium transp 89.0 3.9 8.4E-05 36.1 9.6 91 71-169 3-97 (453)
322 PRK08293 3-hydroxybutyryl-CoA 88.1 14 0.0003 30.6 12.5 42 69-110 4-47 (287)
323 cd08283 FDH_like_1 Glutathione 88.0 5.2 0.00011 34.6 9.5 42 67-108 184-228 (386)
324 PF05050 Methyltransf_21: Meth 87.9 1.3 2.7E-05 33.0 5.0 49 73-121 1-58 (167)
325 PTZ00357 methyltransferase; Pr 87.3 1.6 3.4E-05 40.8 5.9 91 69-159 702-818 (1072)
326 PLN00141 Tic62-NAD(P)-related 87.1 6.2 0.00013 31.7 9.0 99 68-172 17-133 (251)
327 KOG1201 Hydroxysteroid 17-beta 86.9 2.6 5.7E-05 35.2 6.6 77 67-145 37-122 (300)
328 TIGR00853 pts-lac PTS system, 86.7 5.3 0.00012 27.4 7.1 57 69-147 4-60 (95)
329 COG1565 Uncharacterized conser 86.2 2.9 6.2E-05 36.0 6.6 60 54-113 63-133 (370)
330 KOG1331 Predicted methyltransf 85.9 0.71 1.5E-05 38.2 2.8 90 67-169 45-141 (293)
331 COG1063 Tdh Threonine dehydrog 85.8 8.5 0.00018 33.0 9.6 94 68-168 169-266 (350)
332 COG5459 Predicted rRNA methyla 85.8 2.9 6.2E-05 36.0 6.3 102 68-171 114-225 (484)
333 PLN03209 translocon at the inn 85.7 12 0.00026 34.5 10.7 76 68-145 80-167 (576)
334 PLN02540 methylenetetrahydrofo 85.6 5.1 0.00011 36.7 8.3 81 42-126 5-99 (565)
335 cd05564 PTS_IIB_chitobiose_lic 85.6 2.8 6E-05 28.8 5.3 41 101-146 15-55 (96)
336 PRK07904 short chain dehydroge 85.3 5.7 0.00012 32.1 7.9 77 67-145 7-95 (253)
337 PRK05867 short chain dehydroge 85.2 6.4 0.00014 31.5 8.2 76 68-145 9-94 (253)
338 COG2933 Predicted SAM-dependen 85.1 3.2 6.9E-05 34.3 6.0 87 49-146 188-279 (358)
339 COG3392 Adenine-specific DNA m 84.7 1.5 3.3E-05 36.0 4.1 32 67-98 27-58 (330)
340 PRK09880 L-idonate 5-dehydroge 84.5 12 0.00026 31.6 9.9 92 67-169 169-264 (343)
341 TIGR00561 pntA NAD(P) transhyd 84.2 15 0.00031 33.4 10.4 41 67-107 163-205 (511)
342 KOG2798 Putative trehalase [Ca 83.5 3.4 7.4E-05 34.9 5.7 40 67-106 150-189 (369)
343 COG1743 Adenine-specific DNA m 83.1 1.5 3.2E-05 41.3 3.8 44 67-110 90-133 (875)
344 PF00107 ADH_zinc_N: Zinc-bind 82.8 2.8 6.2E-05 29.8 4.7 88 77-172 1-90 (130)
345 COG3510 CmcI Cephalosporin hyd 82.8 2.5 5.3E-05 33.2 4.4 55 68-127 70-130 (237)
346 PRK06125 short chain dehydroge 82.5 12 0.00025 30.1 8.7 77 68-145 7-89 (259)
347 PRK06172 short chain dehydroge 82.3 11 0.00025 30.0 8.5 76 68-145 7-92 (253)
348 PRK08945 putative oxoacyl-(acy 81.9 9.4 0.0002 30.4 7.9 78 67-145 11-100 (247)
349 COG4798 Predicted methyltransf 81.6 9.3 0.0002 30.2 7.1 101 67-172 48-167 (238)
350 cd08237 ribitol-5-phosphate_DH 81.1 19 0.0004 30.5 9.7 89 66-169 162-254 (341)
351 COG0677 WecC UDP-N-acetyl-D-ma 80.9 10 0.00022 33.2 7.8 108 69-185 10-144 (436)
352 PRK08339 short chain dehydroge 80.7 12 0.00025 30.4 8.0 76 68-145 8-93 (263)
353 PF02737 3HCDH_N: 3-hydroxyacy 79.9 25 0.00054 27.0 10.2 92 71-171 2-113 (180)
354 PRK12826 3-ketoacyl-(acyl-carr 79.9 28 0.0006 27.5 11.3 76 68-145 6-91 (251)
355 PRK06129 3-hydroxyacyl-CoA deh 79.7 35 0.00076 28.5 12.9 105 70-182 4-128 (308)
356 cd08254 hydroxyacyl_CoA_DH 6-h 79.7 27 0.00059 28.9 10.2 93 67-168 165-260 (338)
357 PRK07890 short chain dehydroge 79.6 18 0.00038 28.9 8.8 76 68-145 5-90 (258)
358 PF01210 NAD_Gly3P_dh_N: NAD-d 79.4 11 0.00025 28.1 7.0 89 71-168 2-100 (157)
359 PF03446 NAD_binding_2: NAD bi 79.3 17 0.00038 27.2 8.1 84 71-172 4-94 (163)
360 KOG0919 C-5 cytosine-specific 79.2 2.2 4.7E-05 34.7 3.1 72 69-146 4-78 (338)
361 PRK07819 3-hydroxybutyryl-CoA 79.2 36 0.00077 28.3 11.8 94 69-171 6-120 (286)
362 PRK08862 short chain dehydroge 78.9 15 0.00032 29.2 8.0 77 68-145 5-91 (227)
363 PRK08340 glucose-1-dehydrogena 78.9 15 0.00034 29.4 8.2 73 70-145 2-84 (259)
364 PRK07478 short chain dehydroge 78.8 20 0.00042 28.6 8.8 76 68-145 6-91 (254)
365 PRK05599 hypothetical protein; 78.8 16 0.00035 29.2 8.2 75 70-145 2-85 (246)
366 PRK09291 short chain dehydroge 78.7 15 0.00034 29.2 8.2 75 69-145 3-81 (257)
367 PF05430 Methyltransf_30: S-ad 78.7 5.7 0.00012 28.7 5.0 73 117-203 33-111 (124)
368 cd05292 LDH_2 A subgroup of L- 77.6 24 0.00053 29.6 9.2 99 70-176 2-121 (308)
369 cd08281 liver_ADH_like1 Zinc-d 77.4 35 0.00077 29.1 10.4 93 67-168 191-287 (371)
370 PRK12429 3-hydroxybutyrate deh 77.3 34 0.00074 27.1 11.7 76 68-145 4-89 (258)
371 PRK05854 short chain dehydroge 77.3 24 0.00051 29.5 9.1 77 68-145 14-101 (313)
372 PRK07097 gluconate 5-dehydroge 76.8 23 0.0005 28.5 8.7 77 67-145 9-95 (265)
373 PRK06139 short chain dehydroge 76.7 18 0.0004 30.6 8.3 76 68-145 7-92 (330)
374 PF03807 F420_oxidored: NADP o 76.5 12 0.00027 25.0 6.0 78 77-168 6-91 (96)
375 PRK07102 short chain dehydroge 76.5 16 0.00034 29.0 7.5 75 70-145 3-84 (243)
376 PRK07024 short chain dehydroge 76.1 17 0.00036 29.2 7.6 74 69-145 3-86 (257)
377 PRK09242 tropinone reductase; 75.5 28 0.0006 27.8 8.8 77 68-145 9-96 (257)
378 PRK07677 short chain dehydroge 75.4 19 0.00041 28.7 7.8 75 69-145 2-86 (252)
379 PRK07062 short chain dehydroge 75.2 26 0.00056 28.1 8.6 77 68-145 8-95 (265)
380 PF11899 DUF3419: Protein of u 74.7 13 0.00029 32.4 6.9 42 67-109 35-77 (380)
381 PRK08643 acetoin reductase; Va 74.7 25 0.00055 28.0 8.4 75 69-145 3-87 (256)
382 PLN02668 indole-3-acetate carb 74.6 5.7 0.00012 34.6 4.6 18 68-85 64-81 (386)
383 PRK07791 short chain dehydroge 74.5 23 0.00049 29.1 8.2 76 68-145 6-100 (286)
384 PRK09424 pntA NAD(P) transhydr 74.2 7.3 0.00016 35.3 5.4 41 67-107 164-206 (509)
385 PRK07523 gluconate 5-dehydroge 74.2 29 0.00063 27.7 8.6 76 68-145 10-95 (255)
386 PRK09260 3-hydroxybutyryl-CoA 74.0 49 0.0011 27.3 10.6 40 70-109 3-44 (288)
387 PRK07109 short chain dehydroge 73.8 28 0.0006 29.5 8.7 76 68-145 8-93 (334)
388 COG0569 TrkA K+ transport syst 73.7 45 0.00097 26.7 10.7 70 70-146 2-75 (225)
389 TIGR00571 dam DNA adenine meth 73.6 5.8 0.00013 32.6 4.4 46 52-102 13-58 (266)
390 COG1062 AdhC Zn-dependent alco 73.4 13 0.00028 31.9 6.3 41 67-107 185-228 (366)
391 PRK05650 short chain dehydroge 73.2 28 0.00061 28.1 8.4 74 70-145 2-85 (270)
392 KOG1205 Predicted dehydrogenas 73.2 20 0.00043 29.9 7.3 78 68-145 12-99 (282)
393 KOG2782 Putative SAM dependent 73.1 5.9 0.00013 31.8 4.0 54 54-109 32-87 (303)
394 PRK06720 hypothetical protein; 73.1 38 0.00083 25.7 8.6 77 68-145 16-101 (169)
395 PRK11064 wecC UDP-N-acetyl-D-m 72.9 22 0.00047 31.3 8.0 37 69-105 4-42 (415)
396 TIGR00518 alaDH alanine dehydr 72.7 28 0.0006 30.2 8.5 98 67-172 166-269 (370)
397 PF05206 TRM13: Methyltransfer 72.6 12 0.00026 30.8 5.9 33 67-99 18-57 (259)
398 PRK14106 murD UDP-N-acetylmura 72.5 44 0.00095 29.5 10.0 70 68-146 5-77 (450)
399 PRK08589 short chain dehydroge 72.4 29 0.00064 28.1 8.3 75 68-145 6-90 (272)
400 TIGR03206 benzo_BadH 2-hydroxy 72.3 34 0.00073 27.0 8.5 77 68-146 3-89 (250)
401 PRK06124 gluconate 5-dehydroge 72.1 28 0.0006 27.8 8.0 77 67-145 10-96 (256)
402 PRK15057 UDP-glucose 6-dehydro 72.1 46 0.00099 29.1 9.7 31 77-107 7-40 (388)
403 PRK10310 PTS system galactitol 72.0 23 0.00049 24.2 6.3 53 74-146 7-59 (94)
404 PRK06182 short chain dehydroge 71.7 52 0.0011 26.6 10.2 71 68-146 3-83 (273)
405 COG1748 LYS9 Saccharopine dehy 71.5 17 0.00037 31.7 6.9 71 69-146 2-77 (389)
406 cd05188 MDR Medium chain reduc 71.5 49 0.0011 26.2 9.7 93 67-168 134-229 (271)
407 PF13460 NAD_binding_10: NADH( 71.2 26 0.00057 26.3 7.3 88 74-171 3-98 (183)
408 PRK07576 short chain dehydroge 70.9 39 0.00085 27.2 8.7 76 68-145 9-94 (264)
409 PRK08213 gluconate 5-dehydroge 70.7 31 0.00066 27.6 8.0 76 68-145 12-97 (259)
410 PRK12384 sorbitol-6-phosphate 70.6 36 0.00078 27.1 8.4 76 69-145 3-89 (259)
411 PF03141 Methyltransf_29: Puta 70.6 61 0.0013 29.3 10.1 117 67-202 365-490 (506)
412 PRK05876 short chain dehydroge 70.5 29 0.00063 28.3 7.9 76 68-145 6-91 (275)
413 PRK11730 fadB multifunctional 70.4 42 0.0009 31.9 9.7 91 69-168 314-424 (715)
414 PRK10537 voltage-gated potassi 70.4 30 0.00065 30.3 8.2 95 69-174 241-339 (393)
415 PRK06197 short chain dehydroge 70.2 48 0.001 27.4 9.2 77 68-145 16-103 (306)
416 PRK08303 short chain dehydroge 70.1 29 0.00063 29.0 7.9 76 68-145 8-103 (305)
417 cd08230 glucose_DH Glucose deh 70.0 64 0.0014 27.3 10.2 91 67-169 172-267 (355)
418 PRK05993 short chain dehydroge 70.0 58 0.0013 26.4 10.4 70 68-145 4-84 (277)
419 PLN00016 RNA-binding protein; 69.6 18 0.0004 31.1 6.8 102 68-171 52-165 (378)
420 PRK07063 short chain dehydroge 69.6 34 0.00074 27.3 8.0 77 68-145 7-94 (260)
421 PRK08251 short chain dehydroge 69.5 44 0.00096 26.4 8.6 76 69-145 3-89 (248)
422 PRK05866 short chain dehydroge 69.0 33 0.00071 28.3 8.0 76 68-145 40-125 (293)
423 PF02153 PDH: Prephenate dehyd 69.0 35 0.00076 27.8 8.0 72 82-168 2-76 (258)
424 PTZ00142 6-phosphogluconate de 68.7 64 0.0014 29.0 10.1 95 71-172 4-101 (470)
425 PRK08085 gluconate 5-dehydroge 68.5 49 0.0011 26.3 8.7 76 68-145 9-94 (254)
426 TIGR03451 mycoS_dep_FDH mycoth 68.0 75 0.0016 26.9 11.0 95 67-169 176-274 (358)
427 PF00072 Response_reg: Respons 67.5 35 0.00075 22.9 8.1 77 92-171 1-79 (112)
428 COG1004 Ugd Predicted UDP-gluc 67.4 7.8 0.00017 33.8 3.9 31 77-107 7-41 (414)
429 PRK07417 arogenate dehydrogena 67.4 36 0.00078 28.0 7.8 86 71-172 3-91 (279)
430 COG4221 Short-chain alcohol de 67.3 35 0.00075 27.8 7.3 75 68-145 6-89 (246)
431 CHL00194 ycf39 Ycf39; Provisio 67.2 50 0.0011 27.5 8.8 90 74-171 5-110 (317)
432 PRK07666 fabG 3-ketoacyl-(acyl 67.1 54 0.0012 25.7 8.7 76 68-145 7-92 (239)
433 KOG3350 Uncharacterized conser 67.1 13 0.00028 28.8 4.5 80 91-184 100-184 (217)
434 PRK12481 2-deoxy-D-gluconate 3 66.9 38 0.00083 27.0 7.8 74 68-145 8-91 (251)
435 PRK06935 2-deoxy-D-gluconate 3 66.4 44 0.00095 26.7 8.1 75 68-145 15-99 (258)
436 PLN02740 Alcohol dehydrogenase 66.3 85 0.0018 27.0 11.1 41 67-107 198-241 (381)
437 cd05565 PTS_IIB_lactose PTS_II 66.2 27 0.00059 24.2 5.7 53 101-158 16-68 (99)
438 PF01555 N6_N4_Mtase: DNA meth 66.2 15 0.00033 28.6 5.2 19 160-178 45-63 (231)
439 PRK07774 short chain dehydroge 66.2 52 0.0011 26.0 8.4 76 68-145 6-91 (250)
440 PRK10904 DNA adenine methylase 66.1 9.2 0.0002 31.6 4.0 45 52-102 16-60 (271)
441 PRK08703 short chain dehydroge 65.9 37 0.00079 26.7 7.4 57 68-125 6-66 (239)
442 PRK07533 enoyl-(acyl carrier p 65.9 39 0.00085 27.2 7.7 77 67-145 9-96 (258)
443 PRK08416 7-alpha-hydroxysteroi 65.9 50 0.0011 26.5 8.3 76 68-145 8-95 (260)
444 PRK07035 short chain dehydroge 65.7 44 0.00096 26.5 7.9 76 68-145 8-93 (252)
445 COG4301 Uncharacterized conser 65.6 77 0.0017 26.2 12.1 103 68-172 79-194 (321)
446 PRK05786 fabG 3-ketoacyl-(acyl 65.6 44 0.00096 26.1 7.8 76 68-146 5-90 (238)
447 PRK06914 short chain dehydroge 65.4 43 0.00094 27.1 7.9 77 68-145 3-89 (280)
448 PF03514 GRAS: GRAS domain fam 65.2 93 0.002 27.0 11.4 103 67-172 110-245 (374)
449 KOG0022 Alcohol dehydrogenase, 65.0 20 0.00043 30.6 5.6 41 67-107 192-235 (375)
450 PRK06194 hypothetical protein; 64.7 43 0.00093 27.2 7.8 76 68-145 6-91 (287)
451 PRK07792 fabG 3-ketoacyl-(acyl 64.5 55 0.0012 27.2 8.5 76 67-145 11-97 (306)
452 PRK06200 2,3-dihydroxy-2,3-dih 64.4 49 0.0011 26.5 8.0 73 68-145 6-88 (263)
453 PRK06196 oxidoreductase; Provi 64.3 53 0.0011 27.3 8.4 72 68-145 26-107 (315)
454 PRK06138 short chain dehydroge 63.8 71 0.0015 25.2 11.0 75 68-145 5-89 (252)
455 PRK03369 murD UDP-N-acetylmura 63.5 63 0.0014 29.0 9.1 67 67-146 11-79 (488)
456 PRK05808 3-hydroxybutyryl-CoA 63.3 83 0.0018 25.8 12.3 95 70-173 5-120 (282)
457 PRK07326 short chain dehydroge 62.8 49 0.0011 25.8 7.6 75 68-145 6-90 (237)
458 COG0338 Dam Site-specific DNA 62.8 4.7 0.0001 33.5 1.6 45 53-102 15-59 (274)
459 PRK07454 short chain dehydroge 62.7 60 0.0013 25.5 8.1 76 68-145 6-91 (241)
460 PRK08594 enoyl-(acyl carrier p 62.6 44 0.00095 26.9 7.4 78 68-145 7-95 (257)
461 PRK08265 short chain dehydroge 62.5 53 0.0011 26.4 7.9 73 68-145 6-88 (261)
462 cd05291 HicDH_like L-2-hydroxy 62.5 70 0.0015 26.8 8.7 98 70-175 2-121 (306)
463 COG0771 MurD UDP-N-acetylmuram 62.3 38 0.00083 30.2 7.3 70 68-146 7-78 (448)
464 PF03492 Methyltransf_7: SAM d 62.3 10 0.00023 32.3 3.7 20 67-86 16-35 (334)
465 KOG1098 Putative SAM-dependent 62.0 16 0.00035 33.8 4.9 34 67-100 44-80 (780)
466 TIGR00676 fadh2 5,10-methylene 61.9 73 0.0016 26.2 8.6 73 50-126 14-99 (272)
467 PLN02657 3,8-divinyl protochlo 61.8 57 0.0012 28.4 8.3 104 67-172 59-183 (390)
468 PRK07832 short chain dehydroge 61.5 60 0.0013 26.2 8.1 74 71-145 3-86 (272)
469 PRK11154 fadJ multifunctional 60.9 74 0.0016 30.2 9.4 92 68-168 309-421 (708)
470 PRK08217 fabG 3-ketoacyl-(acyl 60.9 61 0.0013 25.5 7.9 76 68-145 5-90 (253)
471 PRK07453 protochlorophyllide o 60.9 67 0.0015 26.8 8.4 76 68-145 6-91 (322)
472 PRK07831 short chain dehydroge 60.8 55 0.0012 26.2 7.7 78 68-145 17-105 (262)
473 KOG2356 Transcriptional activa 60.8 5.6 0.00012 33.2 1.7 31 117-147 164-194 (366)
474 PRK05872 short chain dehydroge 60.7 54 0.0012 27.0 7.8 75 68-145 9-93 (296)
475 COG0604 Qor NADPH:quinone redu 60.6 1E+02 0.0023 26.1 11.1 104 55-169 132-239 (326)
476 PRK12823 benD 1,6-dihydroxycyc 60.5 66 0.0014 25.6 8.1 75 68-145 8-92 (260)
477 COG0541 Ffh Signal recognition 60.4 57 0.0012 29.0 7.9 104 68-171 100-221 (451)
478 PF00106 adh_short: short chai 60.4 52 0.0011 24.1 7.0 74 71-146 3-89 (167)
479 PF04072 LCM: Leucine carboxyl 60.3 17 0.00037 27.9 4.3 58 68-126 79-141 (183)
480 PRK07814 short chain dehydroge 60.1 65 0.0014 25.8 8.0 76 68-145 10-95 (263)
481 cd08239 THR_DH_like L-threonin 59.5 1E+02 0.0022 25.7 9.4 93 67-168 163-259 (339)
482 PRK15001 SAM-dependent 23S rib 59.2 1.2E+02 0.0026 26.5 9.7 94 70-173 47-144 (378)
483 PRK09432 metF 5,10-methylenete 59.1 66 0.0014 27.0 7.9 85 37-125 25-122 (296)
484 KOG0725 Reductases with broad 58.9 94 0.002 25.6 8.7 78 68-145 8-97 (270)
485 TIGR03366 HpnZ_proposed putati 58.9 98 0.0021 25.2 10.2 92 67-168 120-215 (280)
486 PRK09072 short chain dehydroge 58.8 64 0.0014 25.8 7.7 74 68-145 5-88 (263)
487 PRK08277 D-mannonate oxidoredu 58.7 68 0.0015 25.9 7.9 76 68-145 10-95 (278)
488 PRK12743 oxidoreductase; Provi 58.7 83 0.0018 25.0 8.4 75 69-145 3-88 (256)
489 PLN02827 Alcohol dehydrogenase 58.5 1.2E+02 0.0026 26.1 10.8 93 67-168 193-292 (378)
490 PRK05855 short chain dehydroge 58.3 67 0.0014 29.0 8.5 76 68-145 315-400 (582)
491 PRK07502 cyclohexadienyl dehyd 58.1 93 0.002 25.9 8.8 86 69-168 7-97 (307)
492 PLN02214 cinnamoyl-CoA reducta 58.0 1.2E+02 0.0025 25.7 10.4 75 68-145 10-89 (342)
493 PRK06113 7-alpha-hydroxysteroi 57.9 72 0.0016 25.3 7.9 76 68-145 11-96 (255)
494 PRK07231 fabG 3-ketoacyl-(acyl 57.6 66 0.0014 25.3 7.6 75 68-145 5-89 (251)
495 PRK13394 3-hydroxybutyrate deh 57.6 71 0.0015 25.3 7.8 76 68-145 7-92 (262)
496 PF03721 UDPG_MGDP_dh_N: UDP-g 57.5 28 0.00061 26.9 5.1 23 84-106 18-40 (185)
497 PRK08993 2-deoxy-D-gluconate 3 57.2 69 0.0015 25.5 7.7 74 68-145 10-93 (253)
498 PLN02780 ketoreductase/ oxidor 57.1 58 0.0013 27.4 7.4 57 68-125 53-114 (320)
499 KOG4174 Uncharacterized conser 57.0 29 0.00062 28.5 5.1 84 67-150 56-150 (282)
500 PRK06949 short chain dehydroge 57.0 74 0.0016 25.2 7.8 76 68-145 9-94 (258)
No 1
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=100.00 E-value=1.4e-36 Score=260.56 Aligned_cols=204 Identities=31% Similarity=0.469 Sum_probs=183.1
Q ss_pred cccCCCCCccccCceEEEeCCCceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhH
Q 043853 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIG 82 (222)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~ 82 (222)
|.|+...+.++++++..++|++++.+++.|..|.+++++|+|.|....+.+.+.+.+.+... ++.+|||+|||+|.++
T Consensus 171 ~~~~~~~~~~~g~~~~~l~G~~~i~e~~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~--~~~~vLDL~cG~G~~~ 248 (374)
T TIGR02085 171 NIQPVHMAILEGEEEIFLTEQQALPERFNDVPLVIRPQSFFQTNPKVAAQLYATARQWVREI--PVTQMWDLFCGVGGFG 248 (374)
T ss_pred EECCCCCCceECceEEEEcCCCeeEEEECCEEEEECCCccccCCHHHHHHHHHHHHHHHHhc--CCCEEEEccCCccHHH
Confidence 45666777778888888999999999999999999999999999999999998887765422 2579999999999999
Q ss_pred HHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCC
Q 043853 83 LTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK 162 (222)
Q Consensus 83 ~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~ 162 (222)
+.++..+.+++|+|+|+.+++.|++|++.+++++++++++|+.++..... ..||+|++||||.++...+++.+..++
T Consensus 249 l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~---~~~D~vi~DPPr~G~~~~~l~~l~~~~ 325 (374)
T TIGR02085 249 LHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQM---SAPELVLVNPPRRGIGKELCDYLSQMA 325 (374)
T ss_pred HHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcC---CCCCEEEECCCCCCCcHHHHHHHHhcC
Confidence 99998778999999999999999999999999889999999987754321 359999999999999999999999999
Q ss_pred CCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853 163 APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221 (222)
Q Consensus 163 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~ 221 (222)
|++++|++|+|.++++|+..| .||++..+.++||||+|+|+|+|++|+|
T Consensus 326 p~~ivyvsc~p~TlaRDl~~L----------~gy~l~~~~~~DmFPqT~HvE~v~ll~r 374 (374)
T TIGR02085 326 PKFILYSSCNAQTMAKDIAEL----------SGYQIERVQLFDMFPHTSHYEVLTLLVR 374 (374)
T ss_pred CCeEEEEEeCHHHHHHHHHHh----------cCceEEEEEEeccCCCCCcEEEEEEEeC
Confidence 999999999999999999987 3799999999999999999999999986
No 2
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=100.00 E-value=3.7e-36 Score=252.97 Aligned_cols=204 Identities=33% Similarity=0.467 Sum_probs=183.7
Q ss_pred cccCCCCCccccCceEEEeCCCceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhH
Q 043853 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIG 82 (222)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~ 82 (222)
+.+++..+.++++++..++|+..+.+++.+..|.+.+++|+|.|..+++.+.+.+.+.+... ++.+|||+|||+|.++
T Consensus 111 ~~~~~~~~~~~g~~~~~l~g~~~~~~~~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~--~~~~VLDl~cG~G~~s 188 (315)
T PRK03522 111 NIQPVHMAILEGEEEIFLTEQQALPERFNGVPLFIRPQSFFQTNPAVAAQLYATARDWVREL--PPRSMWDLFCGVGGFG 188 (315)
T ss_pred EECCCCCCcccCCceEEEeCCCeEEEEECCEEEEECCCeeeecCHHHHHHHHHHHHHHHHhc--CCCEEEEccCCCCHHH
Confidence 45677777778888888999999999999999999999999999999999988887776422 2579999999999999
Q ss_pred HHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCC
Q 043853 83 LTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK 162 (222)
Q Consensus 83 ~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~ 162 (222)
+.+++.+.+|+|+|+|+.+++.|++|++.+++++++++++|+.++.... .+.||+|++|||+.++...+.+.+....
T Consensus 189 l~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~---~~~~D~Vv~dPPr~G~~~~~~~~l~~~~ 265 (315)
T PRK03522 189 LHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ---GEVPDLVLVNPPRRGIGKELCDYLSQMA 265 (315)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc---CCCCeEEEECCCCCCccHHHHHHHHHcC
Confidence 9999888899999999999999999999999988999999998875432 1369999999999999999999999999
Q ss_pred CCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853 163 APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221 (222)
Q Consensus 163 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~ 221 (222)
+++++|++|+|.++++|++.+ .+|++..+.++||||+|+|+|+|++|+|
T Consensus 266 ~~~ivyvsc~p~t~~rd~~~l----------~~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 266 PRFILYSSCNAQTMAKDLAHL----------PGYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred CCeEEEEECCcccchhHHhhc----------cCcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 999999999999999999876 3799999999999999999999999987
No 3
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-35 Score=255.86 Aligned_cols=200 Identities=48% Similarity=0.749 Sum_probs=185.9
Q ss_pred ccccCCCCCccccCceEEEeCCCceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchh
Q 043853 2 NNVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI 81 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~ 81 (222)
.|++++.++.+.+++...++|...+.+ +..|.+++.+|+|.|...++.+++++.+.++..+ ++++||++||.|.+
T Consensus 233 ~~i~~~~~~~i~g~~~~~~~~~~~i~e---~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~--~~~vlDlYCGvG~f 307 (432)
T COG2265 233 QNINRAKTNVIEGDEEITLYGLESIRE---GVSFQISPRSFFQVNPAVAEKLYETALEWLELAG--GERVLDLYCGVGTF 307 (432)
T ss_pred EEecCCCCceEEcceeEEEeccccccc---ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhcC--CCEEEEeccCCChh
Confidence 578999999999999999999884444 9999999999999999999999999999987544 78999999999999
Q ss_pred HHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhC
Q 043853 82 GLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKL 161 (222)
Q Consensus 82 ~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l 161 (222)
++.+|+...+|+|+|+++.+++.|++|++.|++.|++++.+|+.++...+. ....+|.|+.||||.|..+.+++.+..+
T Consensus 308 ~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~-~~~~~d~VvvDPPR~G~~~~~lk~l~~~ 386 (432)
T COG2265 308 GLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW-EGYKPDVVVVDPPRAGADREVLKQLAKL 386 (432)
T ss_pred hhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc-ccCCCCEEEECCCCCCCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999987654 2247999999999999999999999999
Q ss_pred CCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeE
Q 043853 162 KAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 215 (222)
Q Consensus 162 ~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 215 (222)
+|.+++|+||||.|+++|+..|. +.||++..+.++||||+|+|+|+
T Consensus 387 ~p~~IvYVSCNP~TlaRDl~~L~--------~~gy~i~~v~~~DmFP~T~HvE~ 432 (432)
T COG2265 387 KPKRIVYVSCNPATLARDLAILA--------STGYEIERVQPFDMFPHTHHVEA 432 (432)
T ss_pred CCCcEEEEeCCHHHHHHHHHHHH--------hCCeEEEEEEEeccCCCccccCC
Confidence 99999999999999999999997 78999999999999999999985
No 4
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=100.00 E-value=1.4e-34 Score=247.25 Aligned_cols=192 Identities=27% Similarity=0.449 Sum_probs=170.4
Q ss_pred ceEEEeCCCceeeee--cC--eeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCe
Q 043853 16 EEYTLYGKSNITETL--RG--LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKH 91 (222)
Q Consensus 16 ~~~~~~g~~~~~~~~--~~--~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~ 91 (222)
+..+++|.+++.+++ ++ ..|++++++|+|.|...++.+++++.+.+... +.++||+|||+|.+++++++...+
T Consensus 154 ~~~~~~G~~~i~e~l~~~~~~~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~---~~~vLDl~~G~G~~sl~la~~~~~ 230 (362)
T PRK05031 154 KQKIVLDQDYVDERLPVAGREFIYRQVENSFTQPNAAVNEKMLEWALDATKGS---KGDLLELYCGNGNFTLALARNFRR 230 (362)
T ss_pred CcEEEcCCCEEEEEEecCCcEEEEEeCCCCeeccCHHHHHHHHHHHHHHhhcC---CCeEEEEeccccHHHHHHHhhCCE
Confidence 346789999998888 67 88999999999999999999999998876421 257999999999999999998889
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCC------------CCCCcEEEECCCCCCccHHHHHHHH
Q 043853 92 VYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA------------FPKPDIVISDPNRPGMHMKLIKFLL 159 (222)
Q Consensus 92 v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~------------~~~fD~ii~~pp~~~~~~~~~~~l~ 159 (222)
|+|+|+++.+++.|++|++.+++++++++.+|+.++...+... ..+||+|+.||||.++...+++.+.
T Consensus 231 v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~ 310 (362)
T PRK05031 231 VLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQ 310 (362)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHH
Confidence 9999999999999999999999988999999998876433210 1258999999999999999999997
Q ss_pred hCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853 160 KLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221 (222)
Q Consensus 160 ~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~ 221 (222)
. +++++|+||+|.++++|+..|. + ||++..+.++||||+|+|+|+|++|+|
T Consensus 311 ~--~~~ivyvSC~p~tlarDl~~L~--------~-gY~l~~v~~~DmFPqT~HvE~v~lL~r 361 (362)
T PRK05031 311 A--YERILYISCNPETLCENLETLS--------Q-THKVERFALFDQFPYTHHMECGVLLEK 361 (362)
T ss_pred c--cCCEEEEEeCHHHHHHHHHHHc--------C-CcEEEEEEEcccCCCCCcEEEEEEEEe
Confidence 5 7899999999999999999984 3 899999999999999999999999987
No 5
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=100.00 E-value=1.3e-34 Score=253.78 Aligned_cols=186 Identities=37% Similarity=0.508 Sum_probs=164.8
Q ss_pred eeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHH
Q 043853 26 ITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDA 105 (222)
Q Consensus 26 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a 105 (222)
..++++|..|.+.+++|+|.|...++.+.+.+.+.+... ++.+|||+|||+|.+++.+++.+.+++|+|+|+.|++.|
T Consensus 258 ~~~~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~--~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A 335 (443)
T PRK13168 258 YYLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQ--PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERA 335 (443)
T ss_pred eEEEcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCC--CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHH
Confidence 344589999999999999999999999999998887543 368999999999999999998888999999999999999
Q ss_pred HHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhc
Q 043853 106 CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCH 185 (222)
Q Consensus 106 ~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~ 185 (222)
++|++.+++++++++++|+.+...........||+|++|||+.+.. .+++.+..+++++++|+||+|.++++|+..|.
T Consensus 336 ~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~~-~~~~~l~~~~~~~ivyvSCnp~tlaRDl~~L~- 413 (443)
T PRK13168 336 RENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGAA-EVMQALAKLGPKRIVYVSCNPATLARDAGVLV- 413 (443)
T ss_pred HHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcChH-HHHHHHHhcCCCeEEEEEeChHHhhccHHHHh-
Confidence 9999999998899999999875432111124699999999999874 66788888999999999999999999999996
Q ss_pred cCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEeC
Q 043853 186 GVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLELS 222 (222)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~~ 222 (222)
+.||++..+.++||||+|+|+|+|++|+|+
T Consensus 414 -------~~gY~l~~i~~~DmFP~T~HvE~v~lL~r~ 443 (443)
T PRK13168 414 -------EAGYRLKRAGMLDMFPHTGHVESMALFERG 443 (443)
T ss_pred -------hCCcEEEEEEEeccCCCCCcEEEEEEEEeC
Confidence 689999999999999999999999999986
No 6
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=100.00 E-value=8.2e-35 Score=247.62 Aligned_cols=194 Identities=47% Similarity=0.734 Sum_probs=149.6
Q ss_pred cCceEEEeCCCceeeee----cCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC
Q 043853 14 GEEEYTLYGKSNITETL----RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV 89 (222)
Q Consensus 14 ~~~~~~~~g~~~~~~~~----~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~ 89 (222)
+.....++|..++.+.+ .+..|++++++|+|.|..+++.+++++.+.++..+ + .+||++||+|.+++.+|..+
T Consensus 142 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~--~-~vlDlycG~G~fsl~la~~~ 218 (352)
T PF05958_consen 142 SKKTKIVLGQDYVEERLEIQDKGLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSK--G-DVLDLYCGVGTFSLPLAKKA 218 (352)
T ss_dssp CTCEEEECS-CEEECE--ECCCTEEEEEETTS---SBHHHHHHHHHHHHHHCTT-T--T-EEEEES-TTTCCHHHHHCCS
T ss_pred CCccEEEccCcEEeeEeeeeccceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCC--C-cEEEEeecCCHHHHHHHhhC
Confidence 34456667766555544 37899999999999999999999999999886443 3 79999999999999999999
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC------------CCCCCcEEEECCCCCCccHHHHHH
Q 043853 90 KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN------------AFPKPDIVISDPNRPGMHMKLIKF 157 (222)
Q Consensus 90 ~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~------------~~~~fD~ii~~pp~~~~~~~~~~~ 157 (222)
.+|+|+|+++.+++.|++|++.|+++|++++.+++.++...+.. ....+|+|+.||||.|+...+++.
T Consensus 219 ~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~ 298 (352)
T PF05958_consen 219 KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIEL 298 (352)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHH
T ss_pred CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHH
Confidence 99999999999999999999999999999999988765432211 112589999999999999999998
Q ss_pred HHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853 158 LLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221 (222)
Q Consensus 158 l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~ 221 (222)
+..+ ..++|+||+|.|+++|+..|. .||++..+.++||||+|+|+|+|++|+|
T Consensus 299 ~~~~--~~ivYvSCnP~tlaRDl~~L~---------~~y~~~~v~~~DmFP~T~HvE~v~lL~r 351 (352)
T PF05958_consen 299 IKKL--KRIVYVSCNPATLARDLKILK---------EGYKLEKVQPVDMFPQTHHVETVALLER 351 (352)
T ss_dssp HHHS--SEEEEEES-HHHHHHHHHHHH---------CCEEEEEEEEE-SSTTSS--EEEEEEEE
T ss_pred HhcC--CeEEEEECCHHHHHHHHHHHh---------hcCEEEEEEEeecCCCCCcEEEEEEEEe
Confidence 8754 689999999999999999984 4899999999999999999999999998
No 7
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=100.00 E-value=7.2e-34 Score=241.92 Aligned_cols=192 Identities=26% Similarity=0.430 Sum_probs=168.9
Q ss_pred ceEEEeCCCceeeee--cC--eeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCe
Q 043853 16 EEYTLYGKSNITETL--RG--LTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKH 91 (222)
Q Consensus 16 ~~~~~~g~~~~~~~~--~~--~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~ 91 (222)
+..+++|+.++.+.+ +| ..|.+++++|+|.|..+.+.+++++.+.+... +.++||+|||+|.+++.+++...+
T Consensus 145 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~---~~~vlDl~~G~G~~sl~la~~~~~ 221 (353)
T TIGR02143 145 KKKIVLDQDYVDETLPVAGREFIYRQVENSFTQPNAAVNIKMLEWACEVTQGS---KGDLLELYCGNGNFSLALAQNFRR 221 (353)
T ss_pred CcEEEcCCCEEEEEEecCCeEEEEEECCCCcccCCHHHHHHHHHHHHHHhhcC---CCcEEEEeccccHHHHHHHHhCCE
Confidence 456788998888887 67 78999999999999999999999998876422 246999999999999999998889
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC-------C-----CCCCcEEEECCCCCCccHHHHHHHH
Q 043853 92 VYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN-------A-----FPKPDIVISDPNRPGMHMKLIKFLL 159 (222)
Q Consensus 92 v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~-------~-----~~~fD~ii~~pp~~~~~~~~~~~l~ 159 (222)
|+|+|+++.+++.|++|++.+++++++++.+|+.++...... . ...||+|+.||||.++...+++.+.
T Consensus 222 v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~ 301 (353)
T TIGR02143 222 VLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQ 301 (353)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHH
Confidence 999999999999999999999998899999999887643110 0 1148999999999999999999987
Q ss_pred hCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853 160 KLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221 (222)
Q Consensus 160 ~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~ 221 (222)
. +++++|+||+|.++++|+..|. + +|++..+.++||||+|+|+|+|++|+|
T Consensus 302 ~--~~~ivYvsC~p~tlaRDl~~L~--------~-~Y~l~~v~~~DmFP~T~HvE~v~lL~r 352 (353)
T TIGR02143 302 A--YERILYISCNPETLKANLEQLS--------E-THRVERFALFDQFPYTHHMECGVLLER 352 (353)
T ss_pred c--CCcEEEEEcCHHHHHHHHHHHh--------c-CcEEEEEEEcccCCCCCcEEEEEEEEe
Confidence 5 7999999999999999999985 3 399999999999999999999999987
No 8
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=100.00 E-value=7.4e-34 Score=248.58 Aligned_cols=202 Identities=44% Similarity=0.709 Sum_probs=181.1
Q ss_pred cccCCCCCccccCceEEEeCCCceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhH
Q 043853 3 NVNTSVGNTSVGEEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIG 82 (222)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~ 82 (222)
|.|++..+.++++++..++|+..+.++++|..|.+++++|+|.|...++.+.+.+.+.+... ++.+|||+|||+|.++
T Consensus 230 ~~~~~~~~~~~g~~~~~l~G~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~--~~~~vLDl~cG~G~~s 307 (431)
T TIGR00479 230 NINPEKTNVIFGEETEQIAGEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEALELQ--GEELVVDAYCGVGTFT 307 (431)
T ss_pred EeCCCCCCeeeCCceEEEeCCCeEEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHhccC--CCCEEEEcCCCcCHHH
Confidence 56677788888889999999999999999999999999999999999999998888877543 3679999999999999
Q ss_pred HHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCC
Q 043853 83 LTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLK 162 (222)
Q Consensus 83 ~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~ 162 (222)
+.+++.+.+|+|+|+++.+++.|++|++.+++++++++++|+.+....+......||+|++|||+.++...+++.+..++
T Consensus 308 l~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~~l~ 387 (431)
T TIGR00479 308 LPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTIIELK 387 (431)
T ss_pred HHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCCCHHHHHHHHhcC
Confidence 99998888999999999999999999999999889999999987644322122469999999999998899999998899
Q ss_pred CCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCcee
Q 043853 163 APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIE 214 (222)
Q Consensus 163 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 214 (222)
+++++|++|+|.++++|+..|. +.||++..+.++||||+|+|+|
T Consensus 388 ~~~ivyvsc~p~tlard~~~l~--------~~gy~~~~~~~~DmFP~T~HvE 431 (431)
T TIGR00479 388 PERIVYVSCNPATLARDLEFLC--------KEGYGITWVQPVDMFPHTAHVE 431 (431)
T ss_pred CCEEEEEcCCHHHHHHHHHHHH--------HCCeeEEEEEEeccCCCCCCCC
Confidence 9999999999999999999986 6789999999999999999986
No 9
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=8.4e-31 Score=224.29 Aligned_cols=207 Identities=48% Similarity=0.714 Sum_probs=184.5
Q ss_pred CCCCcccc---CceEEEeCCCceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHH
Q 043853 7 SVGNTSVG---EEEYTLYGKSNITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGL 83 (222)
Q Consensus 7 ~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~ 83 (222)
...++.-+ ...+++.|+.++.+.+.|++|+|++++|||.|...++.+...+.+.++++. ++.++|++||||.+++
T Consensus 322 ~~~~ts~~~~~~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~--~k~llDv~CGTG~igl 399 (534)
T KOG2187|consen 322 ESGHTSDGQEGKPLQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPA--DKTLLDVCCGTGTIGL 399 (534)
T ss_pred cccccccCCCCCCeEEEccccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCC--CcEEEEEeecCCceeh
Confidence 33444444 577889998899999999999999999999999999999999999998776 7999999999999999
Q ss_pred HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCC-CCCc-EEEECCCCCCccHHHHHHHHhC
Q 043853 84 TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF-PKPD-IVISDPNRPGMHMKLIKFLLKL 161 (222)
Q Consensus 84 ~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~fD-~ii~~pp~~~~~~~~~~~l~~l 161 (222)
++|++..+|+|+|++|.+++.|++|++.||++|++|+++-+++....+.++. +.-+ ++++||||.|++..++..++..
T Consensus 400 ala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~ 479 (534)
T KOG2187|consen 400 ALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAY 479 (534)
T ss_pred hhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhc
Confidence 9999999999999999999999999999999999999997777665544321 2334 7899999999999999999997
Q ss_pred C-CCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeE
Q 043853 162 K-APRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIEC 215 (222)
Q Consensus 162 ~-~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 215 (222)
+ +.+++|++|++.+.++++..++.....+...+.|++..+.++|+||+|+|+|+
T Consensus 480 ~~~~rlvyvSCn~~t~ar~v~~lc~~~~~~~~~g~fr~~~~~~VDlfP~T~h~E~ 534 (534)
T KOG2187|consen 480 KNPRRLVYVSCNPHTAARNVIDLCSSPKYRLKKGFFRLVKAVGVDLFPHTPHCEM 534 (534)
T ss_pred cCccceEEEEcCHHHhhhhHHHhhcCccccccccccceeeeeecccCCCCCcCCC
Confidence 6 89999999999999999999988777777788899999999999999999984
No 10
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.80 E-value=9e-18 Score=132.03 Aligned_cols=145 Identities=21% Similarity=0.290 Sum_probs=111.4
Q ss_pred ceEEEeCCCceeeeecCeeEEEcCC-ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHH-HhhcCCeEE
Q 043853 16 EEYTLYGKSNITETLRGLTFQISAN-SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLT-LARWVKHVY 93 (222)
Q Consensus 16 ~~~~~~g~~~~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~-la~~~~~v~ 93 (222)
+.+++-|. +.|+++..+.+ .+.+......+.+.+++... .++.+|||+|||+|.+++. +++...+|+
T Consensus 12 ~mrIi~g~------~~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~-----~~~~~vLDl~~GsG~l~l~~lsr~a~~V~ 80 (199)
T PRK10909 12 QIRIIGGQ------WRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV-----IVDARCLDCFAGSGALGLEALSRYAAGAT 80 (199)
T ss_pred CEEEEeec------cCCCEeCCCCCCCcCcCCHHHHHHHHHHHhhh-----cCCCEEEEcCCCccHHHHHHHHcCCCEEE
Confidence 46666553 68888888775 34443333444444444322 1367999999999999995 566667999
Q ss_pred EEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC-CCCccHHHHHHHHh---CCCCcEEEE
Q 043853 94 GYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN-RPGMHMKLIKFLLK---LKAPRIVYV 169 (222)
Q Consensus 94 gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-~~~~~~~~~~~l~~---l~~~~~v~~ 169 (222)
++|+++.+++.+++|++.+++++++++++|+.+..... ...||+|++||| +.++...+++.+.. +.+++++|+
T Consensus 81 ~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~---~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~v 157 (199)
T PRK10909 81 LLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP---GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYV 157 (199)
T ss_pred EEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc---CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEE
Confidence 99999999999999999999888999999998765321 236999999999 67888888888876 589999999
Q ss_pred eeCcc
Q 043853 170 SCNPA 174 (222)
Q Consensus 170 ~~~~~ 174 (222)
+++..
T Consensus 158 e~~~~ 162 (199)
T PRK10909 158 ESEVE 162 (199)
T ss_pred EecCC
Confidence 98763
No 11
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.79 E-value=1.6e-18 Score=148.83 Aligned_cols=150 Identities=23% Similarity=0.299 Sum_probs=125.2
Q ss_pred CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcE
Q 043853 40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNA 117 (222)
Q Consensus 40 ~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v 117 (222)
.+|||++....+.+..++.+.+.... ++.+|||++||+|.+++.++.... +|+++|+++.+++.+++|++.|+++++
T Consensus 31 ~vFyqp~~~~nrdl~~~v~~~~~~~~-~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~ 109 (382)
T PRK04338 31 PVFYNPRMELNRDISVLVLRAFGPKL-PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENE 109 (382)
T ss_pred CeeeCccccchhhHHHHHHHHHHhhc-CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCce
Confidence 58999999999988887777663210 246899999999999999886543 899999999999999999999999888
Q ss_pred EEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHH-HHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCe
Q 043853 118 TFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKF-LLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCY 196 (222)
Q Consensus 118 ~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~-l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 196 (222)
++.++|+..+... .+.||+|++||| +....+++. +..+++++++|++ ++|.+.|+ +.|
T Consensus 110 ~v~~~Da~~~l~~----~~~fD~V~lDP~--Gs~~~~l~~al~~~~~~gilyvS------AtD~~~L~---------g~y 168 (382)
T PRK04338 110 KVFNKDANALLHE----ERKFDVVDIDPF--GSPAPFLDSAIRSVKRGGLLCVT------ATDTAPLC---------GAY 168 (382)
T ss_pred EEEhhhHHHHHhh----cCCCCEEEECCC--CCcHHHHHHHHHHhcCCCEEEEE------ecCchhhc---------CCC
Confidence 9999999887542 146999999998 555677776 7778999999999 68888885 348
Q ss_pred EEeEeeeeccCCCCC
Q 043853 197 KLKSLQPVDMFPHTP 211 (222)
Q Consensus 197 ~~~~~~~~~~~p~~~ 211 (222)
+...++++++||+..
T Consensus 169 ~~~~~~~yd~fP~~~ 183 (382)
T PRK04338 169 PKSCLRKYGAVPLKT 183 (382)
T ss_pred hHHHHHHhcCcccCC
Confidence 999999999999876
No 12
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.76 E-value=1.1e-16 Score=138.16 Aligned_cols=150 Identities=17% Similarity=0.241 Sum_probs=106.4
Q ss_pred cCceEEEeCCC---ceeeeecCeeEEEcCC-----ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHH
Q 043853 14 GEEEYTLYGKS---NITETLRGLTFQISAN-----SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTL 85 (222)
Q Consensus 14 ~~~~~~~~g~~---~~~~~~~~~~~~~~~~-----~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~l 85 (222)
+...+.++|+. .+...++|++|.++.. +||...... ..++.... ++++|||+|||+|++++.+
T Consensus 168 ~~~~~~~~G~~~~~~~~v~E~g~~f~vdl~~g~ktG~flDqr~~----R~~~~~~~-----~g~rVLDlfsgtG~~~l~a 238 (396)
T PRK15128 168 ELTQGPVTGELPPALLPIEEHGMKLLVDIQGGHKTGYYLDQRDS----RLATRRYV-----ENKRVLNCFSYTGGFAVSA 238 (396)
T ss_pred CccceEEecCCCCccEEEEECCEEEEEecccccccCcChhhHHH----HHHHHHhc-----CCCeEEEeccCCCHHHHHH
Confidence 34566788874 4778899999999853 566532111 22233332 3689999999999999976
Q ss_pred hhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccH----------
Q 043853 86 ARW-VKHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHM---------- 152 (222)
Q Consensus 86 a~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~---------- 152 (222)
+.. ..+|+++|+|+.+++.|++|++.|+++ +++++++|+.++...+.....+||+|++|||+-....
T Consensus 239 a~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y 318 (396)
T PRK15128 239 LMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGY 318 (396)
T ss_pred HhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHH
Confidence 554 459999999999999999999999985 6999999999886554322347999999999522111
Q ss_pred -HHH-HHHHhCCCCcEEEE-eeC
Q 043853 153 -KLI-KFLLKLKAPRIVYV-SCN 172 (222)
Q Consensus 153 -~~~-~~l~~l~~~~~v~~-~~~ 172 (222)
.+. ..+..++++|+++. +|+
T Consensus 319 ~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 319 KDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred HHHHHHHHHHcCCCeEEEEEeCC
Confidence 111 12344788887764 443
No 13
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.75 E-value=1.2e-16 Score=123.19 Aligned_cols=129 Identities=28% Similarity=0.321 Sum_probs=96.8
Q ss_pred eeEEEcCCccccCCHH-HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHH
Q 043853 33 LTFQISANSFFQTNTH-QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNA 109 (222)
Q Consensus 33 ~~~~~~~~~f~~~~~~-~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~ 109 (222)
++|...++.|.+.... .+..+.+.+... +..+|||+|||+|.+++.+++..+ +++++|+|+.+++.+++|+
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~ 75 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNA 75 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHH
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 5688889999977765 444555555544 367999999999999999998766 5999999999999999999
Q ss_pred HHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc-------cHHHHHHH-HhCCCCcEEEEeeC
Q 043853 110 KLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM-------HMKLIKFL-LKLKAPRIVYVSCN 172 (222)
Q Consensus 110 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~-------~~~~~~~l-~~l~~~~~v~~~~~ 172 (222)
+.++++++++.+.|+.+... ..+||+|++|||...- ...+++.. ..|+++|.+++..+
T Consensus 76 ~~n~~~~v~~~~~d~~~~~~-----~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 76 ERNGLENVEVVQSDLFEALP-----DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp HHTTCTTEEEEESSTTTTCC-----TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhcCcccccccccccccccc-----ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 99999889999999977543 2589999999994322 23333333 33889998865554
No 14
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.75 E-value=1.4e-16 Score=130.00 Aligned_cols=163 Identities=18% Similarity=0.216 Sum_probs=115.4
Q ss_pred eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHH
Q 043853 28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDA 105 (222)
Q Consensus 28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a 105 (222)
..++|..|.+++++|.+ .+.++.+++.+...+... .+..+|||+|||+|.+++.+++.. .+++|+|+|+.+++.|
T Consensus 50 ~~f~g~~~~v~~~vf~p--r~~Te~Lv~~~l~~~~~~-~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A 126 (251)
T TIGR03704 50 AEFCGLRIAVDPGVFVP--RRRTEFLVDEAAALARPR-SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCA 126 (251)
T ss_pred CeEcCeEEEECCCCcCC--CccHHHHHHHHHHhhccc-CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 45689999999999985 467788888777654311 124589999999999999988653 4899999999999999
Q ss_pred HHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc----------------------------cHHHHHH
Q 043853 106 CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM----------------------------HMKLIKF 157 (222)
Q Consensus 106 ~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~----------------------------~~~~~~~ 157 (222)
++|++.++ ++++++|+.+...... .+.||+|++|||+... ...+++.
T Consensus 127 ~~N~~~~~---~~~~~~D~~~~l~~~~--~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~ 201 (251)
T TIGR03704 127 RRNLADAG---GTVHEGDLYDALPTAL--RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG 201 (251)
T ss_pred HHHHHHcC---CEEEEeechhhcchhc--CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHH
Confidence 99998876 3789999876542211 1369999999995321 0122322
Q ss_pred H-HhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeecc
Q 043853 158 L-LKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDM 206 (222)
Q Consensus 158 l-~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 206 (222)
. ..++++|.+++.........-...+. +.+|+......-|+
T Consensus 202 a~~~L~~gG~l~l~~~~~~~~~v~~~l~--------~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 202 APDWLAPGGHLLVETSERQAPLAVEAFA--------RAGLIARVASSEEL 243 (251)
T ss_pred HHHhcCCCCEEEEEECcchHHHHHHHHH--------HCCCCceeeEcccc
Confidence 2 23789999998887765544444443 45665555554444
No 15
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.75 E-value=1.7e-16 Score=146.39 Aligned_cols=171 Identities=22% Similarity=0.213 Sum_probs=123.8
Q ss_pred CceeeeecCeeEEEcCC-----ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeC
Q 043853 24 SNITETLRGLTFQISAN-----SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEV 97 (222)
Q Consensus 24 ~~~~~~~~~~~~~~~~~-----~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~ 97 (222)
..+...++|.+|.++.. +||..... ..+++.... .+++|||+|||+|++++.++..+. +|+++|+
T Consensus 499 ~~~~v~e~g~~f~v~~~~~~~tG~flDqr~----~R~~~~~~~-----~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~ 569 (702)
T PRK11783 499 EFLEVTEYGAKLLVNLTDYLDTGLFLDHRP----TRRMIGQMA-----KGKDFLNLFAYTGTASVHAALGGAKSTTTVDM 569 (702)
T ss_pred ceEEEEECCEEEEEEcCCCCcceECHHHHH----HHHHHHHhc-----CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeC
Confidence 35778899999999953 45543211 134444443 367999999999999999988654 7999999
Q ss_pred CHHHHHHHHHHHHHcCCC--cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc-------------cHHHHHH-HHhC
Q 043853 98 VPQAISDACRNAKLNNIS--NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM-------------HMKLIKF-LLKL 161 (222)
Q Consensus 98 ~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~-------------~~~~~~~-l~~l 161 (222)
|+.+++.|++|++.|+++ +++++++|+.++.... ..+||+|++|||+-.. ...+... +..+
T Consensus 570 s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~---~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL 646 (702)
T PRK11783 570 SNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA---REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLL 646 (702)
T ss_pred CHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc---CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHc
Confidence 999999999999999986 5999999998876543 2479999999994221 1223333 3448
Q ss_pred CCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeecc---CCCCCcee
Q 043853 162 KAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDM---FPHTPHIE 214 (222)
Q Consensus 162 ~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~ 214 (222)
+++|+++++++...+..+.+.+. +.|+++..+..... ||..+.+.
T Consensus 647 ~~gG~l~~~~~~~~~~~~~~~~~--------~~g~~~~~i~~~~~~~Dhp~~~~~~ 694 (702)
T PRK11783 647 RPGGTLYFSNNKRGFKMDEEGLA--------KLGLKAEEITAKTLPPDFARNPKIH 694 (702)
T ss_pred CCCCEEEEEeCCccCChhHHHHH--------hCCCeEEEEecCCCCCCCCCCcccc
Confidence 99999999999888887777664 45677666553222 55555433
No 16
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.74 E-value=1e-16 Score=136.90 Aligned_cols=153 Identities=23% Similarity=0.241 Sum_probs=115.1
Q ss_pred EEEeCC---CceeeeecCeeEEEcCC-----ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC
Q 043853 18 YTLYGK---SNITETLRGLTFQISAN-----SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV 89 (222)
Q Consensus 18 ~~~~g~---~~~~~~~~~~~~~~~~~-----~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~ 89 (222)
+.++|. ..+...++|.+|.++.. +||...... .+++...+ .+++|||++|-||++++.+|.++
T Consensus 169 ~~~~g~~~~~~~~i~E~g~kf~v~~~~g~kTGfFlDqR~~----R~~l~~~~-----~GkrvLNlFsYTGgfSv~Aa~gG 239 (393)
T COG1092 169 QYLKGEEAPEEVVIEENGVKFLVDLVDGLKTGFFLDQRDN----RRALGELA-----AGKRVLNLFSYTGGFSVHAALGG 239 (393)
T ss_pred cccccccCCCcEEEEeCCeEEEEecCCcccceeeHHhHHH----HHHHhhhc-----cCCeEEEecccCcHHHHHHHhcC
Confidence 345553 27888999999999864 777642222 23344443 27899999999999999999876
Q ss_pred C-eEEEEeCCHHHHHHHHHHHHHcCCCc--EEEEeCchhchhhhcCCCCCCCcEEEECCCC-----CCc------cHHHH
Q 043853 90 K-HVYGYEVVPQAISDACRNAKLNNISN--ATFVQGDLNKIGGDFGNAFPKPDIVISDPNR-----PGM------HMKLI 155 (222)
Q Consensus 90 ~-~v~gvD~~~~~i~~a~~n~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~-----~~~------~~~~~ 155 (222)
. +|++||.|..+++.|++|++.||++. +.++++|+.++.......+.+||+|++|||. ... ...+.
T Consensus 240 A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~ 319 (393)
T COG1092 240 ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLN 319 (393)
T ss_pred CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHH
Confidence 6 99999999999999999999999853 8999999999998877766799999999991 111 11122
Q ss_pred H-HHHhCCCCcEEEEeeCccchHhh
Q 043853 156 K-FLLKLKAPRIVYVSCNPATCARD 179 (222)
Q Consensus 156 ~-~l~~l~~~~~v~~~~~~~~~~~~ 179 (222)
. .+..+.|+|+++++++..-+..+
T Consensus 320 ~~~~~iL~pgG~l~~~s~~~~~~~~ 344 (393)
T COG1092 320 DLALRLLAPGGTLVTSSCSRHFSSD 344 (393)
T ss_pred HHHHHHcCCCCEEEEEecCCccCHH
Confidence 2 22337899999888775544444
No 17
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.74 E-value=4.4e-16 Score=129.29 Aligned_cols=137 Identities=19% Similarity=0.217 Sum_probs=100.4
Q ss_pred eeecCeeEEEcCCccccCCHHHHHHHHHHHH-HHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHH
Q 043853 28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIE-DCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISD 104 (222)
Q Consensus 28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~-~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~ 104 (222)
..++|..|.+++++|.+ ++. ++.++.... ..+. ..+..+|||+|||+|.+++.+++.. .+++|+|+|+.+++.
T Consensus 85 ~~f~g~~f~v~~~vlip-r~~-te~lv~~~l~~~~~--~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~ 160 (284)
T TIGR03533 85 AWFAGLEFYVDERVLIP-RSP-IAELIEDGFAPWLE--PEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAV 160 (284)
T ss_pred CeecCcEEEECCCCccC-CCc-hHHHHHHHHHHHhc--cCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 56689999999999995 333 333333333 2332 1235689999999999999999764 499999999999999
Q ss_pred HHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc---------------------------HHHHH
Q 043853 105 ACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH---------------------------MKLIK 156 (222)
Q Consensus 105 a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~---------------------------~~~~~ 156 (222)
|++|++.+++. +++++++|+.+... ...||+|++|||+.... ..++.
T Consensus 161 A~~n~~~~~~~~~i~~~~~D~~~~~~-----~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~ 235 (284)
T TIGR03533 161 AEINIERHGLEDRVTLIQSDLFAALP-----GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILA 235 (284)
T ss_pred HHHHHHHcCCCCcEEEEECchhhccC-----CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHH
Confidence 99999999985 59999999865432 13799999999953210 12222
Q ss_pred HH-HhCCCCcEEEEeeCc
Q 043853 157 FL-LKLKAPRIVYVSCNP 173 (222)
Q Consensus 157 ~l-~~l~~~~~v~~~~~~ 173 (222)
.+ ..++++|.+++..+.
T Consensus 236 ~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 236 EAADHLNENGVLVVEVGN 253 (284)
T ss_pred HHHHhcCCCCEEEEEECc
Confidence 22 237899999988875
No 18
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.72 E-value=6.6e-16 Score=132.52 Aligned_cols=146 Identities=20% Similarity=0.172 Sum_probs=107.6
Q ss_pred eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHH
Q 043853 28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDA 105 (222)
Q Consensus 28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a 105 (222)
..++|..|.++++.+.+ .+.++.+.+.+.+.+. ++.+|||+|||+|.+++.+++. ..+++|+|+|+.+++.|
T Consensus 218 ~~F~G~~f~V~p~vLIP--RpeTE~LVe~aL~~l~----~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~A 291 (423)
T PRK14966 218 REFYGRRFAVNPNVLIP--RPETEHLVEAVLARLP----ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETA 291 (423)
T ss_pred eeecCcEEEeCCCccCC--CccHHHHHHHhhhccC----CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 45789999999999996 5777777777766542 3568999999999999988864 45899999999999999
Q ss_pred HHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc---------------------------cHHHHHHH
Q 043853 106 CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM---------------------------HMKLIKFL 158 (222)
Q Consensus 106 ~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~---------------------------~~~~~~~l 158 (222)
++|++.++. +++++++|+.+.... ...+||+|++|||+-.. ...+++.+
T Consensus 292 reNa~~~g~-rV~fi~gDl~e~~l~---~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a 367 (423)
T PRK14966 292 RKNAADLGA-RVEFAHGSWFDTDMP---SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGA 367 (423)
T ss_pred HHHHHHcCC-cEEEEEcchhccccc---cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHH
Confidence 999998886 699999998664221 11379999999995211 11222222
Q ss_pred H-hCCCCcEEEEeeCccchHhhHHHh
Q 043853 159 L-KLKAPRIVYVSCNPATCARDLDYL 183 (222)
Q Consensus 159 ~-~l~~~~~v~~~~~~~~~~~~~~~l 183 (222)
. .++++|.+++..+......-.+.+
T Consensus 368 ~~~LkpgG~lilEiG~~Q~e~V~~ll 393 (423)
T PRK14966 368 PDRLAEGGFLLLEHGFDQGAAVRGVL 393 (423)
T ss_pred HHhcCCCcEEEEEECccHHHHHHHHH
Confidence 2 378999988877664444333344
No 19
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=9.1e-16 Score=126.88 Aligned_cols=146 Identities=21% Similarity=0.236 Sum_probs=109.4
Q ss_pred eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHH
Q 043853 28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDA 105 (222)
Q Consensus 28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a 105 (222)
.+++|+.|.++++.+.|. +.++.+++.+........ . +|||+|||||.+++.++..++ +|+|+|+|+.+++.|
T Consensus 76 ~~f~gl~~~v~~~vliPr--~dTe~Lve~~l~~~~~~~--~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A 150 (280)
T COG2890 76 AEFGGLRFKVDEGVLIPR--PDTELLVEAALALLLQLD--K-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALA 150 (280)
T ss_pred CeecceeeeeCCCceecC--CchHHHHHHHHHhhhhcC--C-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHH
Confidence 468999999999999984 567777776553322111 2 799999999999999998876 999999999999999
Q ss_pred HHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc---------------------------cHHHHHHH
Q 043853 106 CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM---------------------------HMKLIKFL 158 (222)
Q Consensus 106 ~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~---------------------------~~~~~~~l 158 (222)
++|+..+++.++.++++|+.+... ++||+|++|||+-.. ...++..+
T Consensus 151 ~~Na~~~~l~~~~~~~~dlf~~~~------~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a 224 (280)
T COG2890 151 RENAERNGLVRVLVVQSDLFEPLR------GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEA 224 (280)
T ss_pred HHHHHHcCCccEEEEeeecccccC------CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhh
Confidence 999999998667777778766543 389999999993211 11222222
Q ss_pred Hh-CCCCcEEEEeeCccchHhhHHHhh
Q 043853 159 LK-LKAPRIVYVSCNPATCARDLDYLC 184 (222)
Q Consensus 159 ~~-l~~~~~v~~~~~~~~~~~~~~~l~ 184 (222)
.. +++++++++.+...+.....+.+.
T Consensus 225 ~~~l~~~g~l~le~g~~q~~~v~~~~~ 251 (280)
T COG2890 225 PDILKPGGVLILEIGLTQGEAVKALFE 251 (280)
T ss_pred HHHcCCCcEEEEEECCCcHHHHHHHHH
Confidence 22 678899988888766665556554
No 20
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.70 E-value=1.2e-15 Score=126.75 Aligned_cols=149 Identities=22% Similarity=0.239 Sum_probs=108.7
Q ss_pred eeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHH
Q 043853 27 TETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISD 104 (222)
Q Consensus 27 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~ 104 (222)
...++|..|.++++.|.+. +.++.+++.+.+.+... .+..+|||+|||+|.+++.++... .+++|+|+|+.+++.
T Consensus 77 ~~~f~g~~f~v~~~vliPr--~ete~lv~~~l~~~~~~-~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~ 153 (284)
T TIGR00536 77 SKEFYGLEFFVNEHVLIPR--PETEELVEKALASLISQ-NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAV 153 (284)
T ss_pred cceEcCeEEEECCCCcCCC--CccHHHHHHHHHHhhhc-CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 3567899999999999863 56777777665543211 123689999999999999998764 499999999999999
Q ss_pred HHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc---------------------------cHHHHH
Q 043853 105 ACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM---------------------------HMKLIK 156 (222)
Q Consensus 105 a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~---------------------------~~~~~~ 156 (222)
|++|++.+++.+ ++++++|+.+... ...||+|++|||+... ...++.
T Consensus 154 a~~n~~~~~~~~~v~~~~~d~~~~~~-----~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~ 228 (284)
T TIGR00536 154 AEENAEKNQLEHRVEFIQSNLFEPLA-----GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIE 228 (284)
T ss_pred HHHHHHHcCCCCcEEEEECchhccCc-----CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHH
Confidence 999999999865 9999999876432 1379999999994221 112222
Q ss_pred HH-HhCCCCcEEEEeeCccchHhhHHHh
Q 043853 157 FL-LKLKAPRIVYVSCNPATCARDLDYL 183 (222)
Q Consensus 157 ~l-~~l~~~~~v~~~~~~~~~~~~~~~l 183 (222)
.. ..++++|.+++..+........+.+
T Consensus 229 ~a~~~L~~gG~l~~e~g~~q~~~~~~~~ 256 (284)
T TIGR00536 229 LAPDYLKPNGFLVCEIGNWQQKSLKELL 256 (284)
T ss_pred HHHHhccCCCEEEEEECccHHHHHHHHH
Confidence 22 2378999998887764444333334
No 21
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.70 E-value=1.3e-15 Score=122.27 Aligned_cols=139 Identities=23% Similarity=0.226 Sum_probs=108.2
Q ss_pred CCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
..+|||+|||+|.+++.+|.+. .+++|||+++++.+.|++|++.|+++. ++++++|+.++...... ..||+|++|
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~Ii~N 122 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDLIICN 122 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCEEEeC
Confidence 7899999999999999999873 499999999999999999999999865 99999999998766442 369999999
Q ss_pred CCCCC--------------------ccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeee
Q 043853 145 PNRPG--------------------MHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQP 203 (222)
Q Consensus 145 pp~~~--------------------~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 203 (222)
||+-. ....++..... ++++|.+++.-.++....-+..+. +.+|....+..
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~--------~~~~~~k~i~~ 194 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLK--------SYNLEPKRIQF 194 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHH--------hcCCCceEEEE
Confidence 99311 12233333333 789999998888877777777774 56788888877
Q ss_pred eccCCCCCceeEE
Q 043853 204 VDMFPHTPHIECV 216 (222)
Q Consensus 204 ~~~~p~~~~~~~v 216 (222)
+.-.+.....-++
T Consensus 195 V~p~~~k~A~~vL 207 (248)
T COG4123 195 VYPKIGKAANRVL 207 (248)
T ss_pred ecCCCCCcceEEE
Confidence 7766655543333
No 22
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.70 E-value=2.4e-15 Score=125.99 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=100.8
Q ss_pred eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHH
Q 043853 28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDA 105 (222)
Q Consensus 28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a 105 (222)
..++|..|.+++++|.+ ++.....+...+...+... +..+|||+|||+|.+++.++... .+++|+|+|+.+++.|
T Consensus 97 ~~F~g~~f~v~~~vlip-r~~te~lv~~~l~~~~~~~--~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A 173 (307)
T PRK11805 97 AWFCGLEFYVDERVLVP-RSPIAELIEDGFAPWLEDP--PVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVA 173 (307)
T ss_pred ceEcCcEEEECCCCcCC-CCchHHHHHHHHHHHhccC--CCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 56689999999999995 3444333333333233211 13689999999999999998764 4999999999999999
Q ss_pred HHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc---------------------------HHHHHH
Q 043853 106 CRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH---------------------------MKLIKF 157 (222)
Q Consensus 106 ~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~---------------------------~~~~~~ 157 (222)
++|++.+++. +++++++|+.+... ...||+|++|||+.... ..++..
T Consensus 174 ~~n~~~~~l~~~i~~~~~D~~~~l~-----~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~ 248 (307)
T PRK11805 174 EINIERHGLEDRVTLIESDLFAALP-----GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAE 248 (307)
T ss_pred HHHHHHhCCCCcEEEEECchhhhCC-----CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHH
Confidence 9999999885 49999999866432 13799999999953210 122222
Q ss_pred H-HhCCCCcEEEEeeCcc
Q 043853 158 L-LKLKAPRIVYVSCNPA 174 (222)
Q Consensus 158 l-~~l~~~~~v~~~~~~~ 174 (222)
. ..++++|.+++.....
T Consensus 249 a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 249 APDYLTEDGVLVVEVGNS 266 (307)
T ss_pred HHHhcCCCCEEEEEECcC
Confidence 2 2378999999887654
No 23
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=8.2e-16 Score=126.48 Aligned_cols=155 Identities=20% Similarity=0.255 Sum_probs=109.2
Q ss_pred cCeeEEEcCCccccCCHHHHHHH-HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHH
Q 043853 31 RGLTFQISANSFFQTNTHQAEVL-YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRN 108 (222)
Q Consensus 31 ~~~~~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n 108 (222)
+....+++|+..|.+..+.+..+ ++++.+.. .+++++||+|||||.+++++++.+. +++|+|+||.+++.|++|
T Consensus 129 ~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~----~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eN 204 (300)
T COG2264 129 DELNIELDPGLAFGTGTHPTTSLCLEALEKLL----KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAREN 204 (300)
T ss_pred CceEEEEccccccCCCCChhHHHHHHHHHHhh----cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHH
Confidence 56778899985555555555555 46665554 3578999999999999999998765 799999999999999999
Q ss_pred HHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHH-hCCCCcEEEEeeCccchHhhHHHhhcc
Q 043853 109 AKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLL-KLKAPRIVYVSCNPATCARDLDYLCHG 186 (222)
Q Consensus 109 ~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~-~l~~~~~v~~~~~~~~~~~~~~~l~~~ 186 (222)
++.|+++. ++....+..+.... .+||+|++|.= .+....+...+. .++|+|.+++|.--.+....+..-+.
T Consensus 205 a~~N~v~~~~~~~~~~~~~~~~~-----~~~DvIVANIL-A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~- 277 (300)
T COG2264 205 ARLNGVELLVQAKGFLLLEVPEN-----GPFDVIVANIL-AEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYE- 277 (300)
T ss_pred HHHcCCchhhhcccccchhhccc-----CcccEEEehhh-HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHH-
Confidence 99999974 33444444443321 48999999872 233334444443 37899999999865555555443322
Q ss_pred CCCCccCCCeEEeEee
Q 043853 187 VGDQNIKGCYKLKSLQ 202 (222)
Q Consensus 187 ~~~~~~~~~~~~~~~~ 202 (222)
..||.+....
T Consensus 278 ------~~gf~v~~~~ 287 (300)
T COG2264 278 ------QAGFEVVEVL 287 (300)
T ss_pred ------hCCCeEeEEE
Confidence 5677777644
No 24
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.69 E-value=3.3e-16 Score=122.87 Aligned_cols=147 Identities=24% Similarity=0.398 Sum_probs=97.2
Q ss_pred CCCCccccCceEEEeCCC--ceeeeecCeeEEEcCC-ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHH
Q 043853 7 SVGNTSVGEEEYTLYGKS--NITETLRGLTFQISAN-SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGL 83 (222)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~ 83 (222)
...+.+...++.+++|+. ....+++|..|.+|.. .||.+ .-..++ .+ +.+.. .+++.|+|++||.|.+++
T Consensus 45 ~v~g~~R~~~~~~LaG~~~~~t~~~E~G~~f~~D~~kvyfs~-rl~~Er-~R-i~~~v----~~~e~VlD~faGIG~f~l 117 (200)
T PF02475_consen 45 IVEGEFRTPDLEVLAGEPRTETIHKENGIRFKVDLSKVYFSP-RLSTER-RR-IANLV----KPGEVVLDMFAGIGPFSL 117 (200)
T ss_dssp -SBTTTTB--EEEEEES--SEEEEEETTEEEEEETTTS---G-GGHHHH-HH-HHTC------TT-EEEETT-TTTTTHH
T ss_pred cCCCCcccccEEEEeCCCceEEEEEeCCEEEEEccceEEEcc-ccHHHH-HH-HHhcC----CcceEEEEccCCccHHHH
Confidence 346677788999999998 7778899999999965 44332 222222 22 22221 358899999999999999
Q ss_pred HHhh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHh
Q 043853 84 TLAR--WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK 160 (222)
Q Consensus 84 ~la~--~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~ 160 (222)
.+|+ .+..|+|+|++|.+++.+++|++.|++++ +.++++|+.++... ..+|.|+.+.|... ..+++....
T Consensus 118 ~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~-----~~~drvim~lp~~~--~~fl~~~~~ 190 (200)
T PF02475_consen 118 PIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPE-----GKFDRVIMNLPESS--LEFLDAALS 190 (200)
T ss_dssp HHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---T-----T-EEEEEE--TSSG--GGGHHHHHH
T ss_pred HHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCc-----cccCEEEECChHHH--HHHHHHHHH
Confidence 9998 56689999999999999999999999987 99999999998752 47999999998543 245555443
Q ss_pred -CCCCcEE
Q 043853 161 -LKAPRIV 167 (222)
Q Consensus 161 -l~~~~~v 167 (222)
++++|++
T Consensus 191 ~~~~~g~i 198 (200)
T PF02475_consen 191 LLKEGGII 198 (200)
T ss_dssp HEEEEEEE
T ss_pred HhcCCcEE
Confidence 4555544
No 25
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.68 E-value=5.3e-16 Score=123.91 Aligned_cols=170 Identities=18% Similarity=0.190 Sum_probs=115.6
Q ss_pred ceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC---eEEEEeCCHHH
Q 043853 25 NITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQA 101 (222)
Q Consensus 25 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~---~v~gvD~~~~~ 101 (222)
.+.+.+.+..|.-.+-.+.+.+.-..+.+...+.+.+... ++.+|||+|||+|.++..+++... +|+++|+++.+
T Consensus 37 f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~--~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~ 114 (215)
T TIGR00080 37 FVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELK--PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPEL 114 (215)
T ss_pred hCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCC--CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 3444444455554555554444334445556666666544 478999999999999999988654 59999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHH
Q 043853 102 ISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLD 181 (222)
Q Consensus 102 i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~ 181 (222)
++.|++|++.+++++++++.+|+.+.... ...||+|+++++...+...+ ...++++|.+++.... ....+.
T Consensus 115 ~~~A~~~~~~~g~~~v~~~~~d~~~~~~~----~~~fD~Ii~~~~~~~~~~~~---~~~L~~gG~lv~~~~~--~~~~~~ 185 (215)
T TIGR00080 115 AEKAERRLRKLGLDNVIVIVGDGTQGWEP----LAPYDRIYVTAAGPKIPEAL---IDQLKEGGILVMPVGE--YLQVLK 185 (215)
T ss_pred HHHHHHHHHHCCCCCeEEEECCcccCCcc----cCCCCEEEEcCCcccccHHH---HHhcCcCcEEEEEEcC--CceEEE
Confidence 99999999999998899999999765432 14799999998765554433 3446899998876543 111111
Q ss_pred HhhccCCCCccCCCeEEeEeeeeccCCCCC
Q 043853 182 YLCHGVGDQNIKGCYKLKSLQPVDMFPHTP 211 (222)
Q Consensus 182 ~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 211 (222)
.+.+ ..+.|......++.+.|.+.
T Consensus 186 ~~~~------~~~~~~~~~~~~~~~~pl~~ 209 (215)
T TIGR00080 186 RAEK------RGGEIIIKDVEPVAFVPLVG 209 (215)
T ss_pred EEEE------eCCEEEEEEeeeEEEEeCCC
Confidence 1111 13456667777777777664
No 26
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.68 E-value=1.9e-15 Score=134.44 Aligned_cols=150 Identities=16% Similarity=0.161 Sum_probs=110.1
Q ss_pred eeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcC-------------------C---CCCCCeEEEEecccchhHHH
Q 043853 27 TETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL-------------------R---DDGSEIVLDLFCGTGTIGLT 84 (222)
Q Consensus 27 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~-------------------~---~~~~~~vlDlg~G~G~~~~~ 84 (222)
...++|+.|.++++.+.| ++.++.+++++.+.+.. . ..+..+|||+|||+|.+++.
T Consensus 78 ~~~F~g~~f~V~~~VLIP--RpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~ 155 (506)
T PRK01544 78 VKEFYSREFIVNKHVLIP--RSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAIS 155 (506)
T ss_pred cCEEcCcEEEeCCCcccC--CCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHH
Confidence 456799999999999998 57888888887665420 0 11346899999999999998
Q ss_pred Hhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc----------
Q 043853 85 LARW--VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH---------- 151 (222)
Q Consensus 85 la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~---------- 151 (222)
++.. ..+++|+|+|+.+++.|++|++.+++. +++++++|+.+... ...||+|++|||+-...
T Consensus 156 la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~-----~~~fDlIvsNPPYi~~~~~~~l~~~v~ 230 (506)
T PRK01544 156 LLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE-----KQKFDFIVSNPPYISHSEKSEMAIETI 230 (506)
T ss_pred HHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc-----CCCccEEEECCCCCCchhhhhcCchhh
Confidence 8764 359999999999999999999999875 49999999865332 14799999999842210
Q ss_pred ------------------HHHHHHH-HhCCCCcEEEEeeCccchHhhHHHh
Q 043853 152 ------------------MKLIKFL-LKLKAPRIVYVSCNPATCARDLDYL 183 (222)
Q Consensus 152 ------------------~~~~~~l-~~l~~~~~v~~~~~~~~~~~~~~~l 183 (222)
..+++.+ ..++++|.+++.........-.+.+
T Consensus 231 ~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~ 281 (506)
T PRK01544 231 NYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIF 281 (506)
T ss_pred ccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHH
Confidence 1122222 2378999999887665443333344
No 27
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.67 E-value=6e-16 Score=120.30 Aligned_cols=140 Identities=23% Similarity=0.302 Sum_probs=101.9
Q ss_pred eecCeeEEEcCC-ccccCCHHHHHHHHHHHHHH-hcCCCCCCCeEEEEecccchhHH-HHhhcCCeEEEEeCCHHHHHHH
Q 043853 29 TLRGLTFQISAN-SFFQTNTHQAEVLYKLIEDC-AGLRDDGSEIVLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDA 105 (222)
Q Consensus 29 ~~~~~~~~~~~~-~f~~~~~~~~~~~~~~i~~~-~~~~~~~~~~vlDlg~G~G~~~~-~la~~~~~v~gvD~~~~~i~~a 105 (222)
++.|.++..+.+ .-.|+.....+.+.+++... + ++.++||++||||.+++ ++++++.+++.||.|+.+++..
T Consensus 7 ~~kgr~l~~p~~~~~RPT~drvrealFniL~~~~~-----~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i 81 (183)
T PF03602_consen 7 KYKGRKLKTPKGDNTRPTTDRVREALFNILQPRNL-----EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKII 81 (183)
T ss_dssp TTTT-EEE-TT--TS-SSSHHHHHHHHHHHHCH-H-----TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHH
T ss_pred ecCCCEecCCCCCCcCCCcHHHHHHHHHHhccccc-----CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHH
Confidence 467888888875 55666666777777777665 3 37899999999999999 6667778999999999999999
Q ss_pred HHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc-c-HHHHHHHHh---CCCCcEEEEeeCc
Q 043853 106 CRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM-H-MKLIKFLLK---LKAPRIVYVSCNP 173 (222)
Q Consensus 106 ~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~-~-~~~~~~l~~---l~~~~~v~~~~~~ 173 (222)
++|++..+.++ ++++.+|+.............||+|++|||+... . ..+++.+.. +++++++++..+.
T Consensus 82 ~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 82 KKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred HHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 99999999876 9999999887776553234689999999997643 2 677777763 6788999888755
No 28
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.67 E-value=7.2e-16 Score=127.01 Aligned_cols=152 Identities=24% Similarity=0.317 Sum_probs=102.8
Q ss_pred ceEEEeCCC--ceeeeecCeeEEEcC-----CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc
Q 043853 16 EEYTLYGKS--NITETLRGLTFQISA-----NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW 88 (222)
Q Consensus 16 ~~~~~~g~~--~~~~~~~~~~~~~~~-----~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~ 88 (222)
..+.++|+. .+...++|+.|.++. .+||....+. .+++...+ .+++|||++|-||++++.++.+
T Consensus 74 ~~~~l~G~~~~~~~v~E~gl~f~v~l~~gqktGlFlDqR~n----R~~v~~~~-----~gkrvLnlFsYTGgfsv~Aa~g 144 (286)
T PF10672_consen 74 PSEVLYGEPPEFFTVEENGLKFRVDLTDGQKTGLFLDQREN----RKWVRKYA-----KGKRVLNLFSYTGGFSVAAAAG 144 (286)
T ss_dssp EEEEEESS-SSEEEEEETTEEEEEESSSSSSTSS-GGGHHH----HHHHHHHC-----TTCEEEEET-TTTHHHHHHHHT
T ss_pred CceEEecCCCCceEEEECCEEEEEEcCCCCcceEcHHHHhh----HHHHHHHc-----CCCceEEecCCCCHHHHHHHHC
Confidence 345788875 678899999999995 4777643332 34455553 3789999999999999987776
Q ss_pred CC-eEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchhhhcCCCCCCCcEEEECCC-----CCCccHH---HHH-
Q 043853 89 VK-HVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIGGDFGNAFPKPDIVISDPN-----RPGMHMK---LIK- 156 (222)
Q Consensus 89 ~~-~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-----~~~~~~~---~~~- 156 (222)
+. +|++||.|..+++.+++|++.|+++ +++++.+|+.++...+.. ..+||+||+||| +..+... +..
T Consensus 145 GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~-~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~ 223 (286)
T PF10672_consen 145 GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK-GGRFDLIILDPPSFAKSKFDLERDYKKLLRR 223 (286)
T ss_dssp TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH-TT-EEEEEE--SSEESSTCEHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc-CCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 54 8999999999999999999999975 599999999998765432 258999999999 1122222 222
Q ss_pred HHHhCCCCcEEEEeeCccchH
Q 043853 157 FLLKLKAPRIVYVSCNPATCA 177 (222)
Q Consensus 157 ~l~~l~~~~~v~~~~~~~~~~ 177 (222)
.+..++++|+++++++...+.
T Consensus 224 a~~ll~~gG~l~~~scs~~i~ 244 (286)
T PF10672_consen 224 AMKLLKPGGLLLTCSCSHHIS 244 (286)
T ss_dssp HHHTEEEEEEEEEEE--TTS-
T ss_pred HHHhcCCCCEEEEEcCCcccC
Confidence 233368999887666644433
No 29
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.65 E-value=1.6e-15 Score=125.68 Aligned_cols=152 Identities=20% Similarity=0.253 Sum_probs=102.9
Q ss_pred cCeeEEEcCCccccCCHHHHHHHH-HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHH
Q 043853 31 RGLTFQISANSFFQTNTHQAEVLY-KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRN 108 (222)
Q Consensus 31 ~~~~~~~~~~~f~~~~~~~~~~~~-~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n 108 (222)
+...+.++|+..|.+..+.+..++ +++.... .++++|||+|||||.++++.++.+. +|+|+|+||.+++.|++|
T Consensus 128 ~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~----~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N 203 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHHPTTRLCLELLEKYV----KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAREN 203 (295)
T ss_dssp TSEEEEESTTSSS-SSHCHHHHHHHHHHHHHS----STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHH
T ss_pred CcEEEEECCCCcccCCCCHHHHHHHHHHHHhc----cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHH
Confidence 567889999866666666655554 5555553 3468999999999999999888654 899999999999999999
Q ss_pred HHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEeeCccchHhhHHHhhcc
Q 043853 109 AKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNPATCARDLDYLCHG 186 (222)
Q Consensus 109 ~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~~~~~~~~~~l~~~ 186 (222)
++.|+++. +.+. ...+... .+||+|++|.-..-+ ..+...+ ..++++|.+++|.--.....++...+
T Consensus 204 ~~~N~~~~~~~v~--~~~~~~~------~~~dlvvANI~~~vL-~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~-- 272 (295)
T PF06325_consen 204 AELNGVEDRIEVS--LSEDLVE------GKFDLVVANILADVL-LELAPDIASLLKPGGYLILSGILEEQEDEVIEAY-- 272 (295)
T ss_dssp HHHTT-TTCEEES--CTSCTCC------S-EEEEEEES-HHHH-HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHH--
T ss_pred HHHcCCCeeEEEE--Eeccccc------ccCCEEEECCCHHHH-HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHH--
Confidence 99999976 4432 2222221 489999998643222 2233333 33789999998886655555655443
Q ss_pred CCCCccCCCeEEeEeee
Q 043853 187 VGDQNIKGCYKLKSLQP 203 (222)
Q Consensus 187 ~~~~~~~~~~~~~~~~~ 203 (222)
+.||++.....
T Consensus 273 ------~~g~~~~~~~~ 283 (295)
T PF06325_consen 273 ------KQGFELVEERE 283 (295)
T ss_dssp ------HTTEEEEEEEE
T ss_pred ------HCCCEEEEEEE
Confidence 23787776543
No 30
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.65 E-value=1.1e-14 Score=118.61 Aligned_cols=146 Identities=24% Similarity=0.251 Sum_probs=106.6
Q ss_pred eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHH
Q 043853 28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDA 105 (222)
Q Consensus 28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a 105 (222)
..+++..|.+++..|.+. +.++.+.+.+.+.+. ..+.+|||+|||+|.++..+++.. .+++|+|+++.+++.|
T Consensus 53 ~~~~~~~~~~~~~~~~p~--~~~~~l~~~~l~~~~---~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a 127 (251)
T TIGR03534 53 REFYGLDFKVSPGVLIPR--PDTEELVEAALERLK---KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVA 127 (251)
T ss_pred ceEeceEEEECCCcccCC--CChHHHHHHHHHhcc---cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 456788888888888764 345556666665543 234689999999999999998763 4999999999999999
Q ss_pred HHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc----------------------------HHHHHH
Q 043853 106 CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH----------------------------MKLIKF 157 (222)
Q Consensus 106 ~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~----------------------------~~~~~~ 157 (222)
++++..+++++++++++|+.+... .++||+|++|||+.... ..+++.
T Consensus 128 ~~~~~~~~~~~~~~~~~d~~~~~~-----~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~ 202 (251)
T TIGR03534 128 RKNAARLGLDNVTFLQSDWFEPLP-----GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQ 202 (251)
T ss_pred HHHHHHcCCCeEEEEECchhccCc-----CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHH
Confidence 999999998889999999976432 25799999999954211 122333
Q ss_pred H-HhCCCCcEEEEeeCccchHhhHHHh
Q 043853 158 L-LKLKAPRIVYVSCNPATCARDLDYL 183 (222)
Q Consensus 158 l-~~l~~~~~v~~~~~~~~~~~~~~~l 183 (222)
+ +.++++|.+++...........+.+
T Consensus 203 ~~~~L~~gG~~~~~~~~~~~~~~~~~l 229 (251)
T TIGR03534 203 APRLLKPGGWLLLEIGYDQGEAVRALF 229 (251)
T ss_pred HHHhcccCCEEEEEECccHHHHHHHHH
Confidence 3 3379999999887654443333334
No 31
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=5.4e-14 Score=107.38 Aligned_cols=136 Identities=24% Similarity=0.236 Sum_probs=95.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCc
Q 043853 45 TNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123 (222)
Q Consensus 45 ~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d 123 (222)
+..+.+..++..+... ..-++..|+|+|||||.+++..+-.+ ..|+|+|+||++++.+++|++..+ .++++..+|
T Consensus 26 Tp~~~Aa~il~~a~~~---g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~d 101 (198)
T COG2263 26 TPAPLAAYILWVAYLR---GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-GDVEFVVAD 101 (198)
T ss_pred CChHHHHHHHHHHHHc---CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcc
Confidence 3445555544333321 11247789999999999999877665 599999999999999999999843 369999999
Q ss_pred hhchhhhcCCCCCCCcEEEECCC----CCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEe
Q 043853 124 LNKIGGDFGNAFPKPDIVISDPN----RPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLK 199 (222)
Q Consensus 124 ~~~~~~~~~~~~~~fD~ii~~pp----~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 199 (222)
+.++.. ++|.++.||| ++.....+++...+.. .++| +-+.......++.+.. +.|+.+.
T Consensus 102 v~~~~~-------~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s--~vVY-siH~a~~~~f~~~~~~-------~~G~~v~ 164 (198)
T COG2263 102 VSDFRG-------KFDTVIMNPPFGSQRRHADRPFLLKALEIS--DVVY-SIHKAGSRDFVEKFAA-------DLGGTVT 164 (198)
T ss_pred hhhcCC-------ccceEEECCCCccccccCCHHHHHHHHHhh--heEE-EeeccccHHHHHHHHH-------hcCCeEE
Confidence 998753 7999999999 3445667776665444 5666 4444344444555543 5565555
Q ss_pred Ee
Q 043853 200 SL 201 (222)
Q Consensus 200 ~~ 201 (222)
..
T Consensus 165 ~~ 166 (198)
T COG2263 165 HI 166 (198)
T ss_pred EE
Confidence 54
No 32
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.63 E-value=7.6e-14 Score=117.06 Aligned_cols=148 Identities=22% Similarity=0.309 Sum_probs=112.1
Q ss_pred CCCccccCceEEEeCCC--ceeeeecCeeEEEcCC--ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHH
Q 043853 8 VGNTSVGEEEYTLYGKS--NITETLRGLTFQISAN--SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGL 83 (222)
Q Consensus 8 ~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~--~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~ 83 (222)
......-.++++++|+. .....++|..|.+|.. .|.+.+.....++.++. .++++|+|.+||.|.+++
T Consensus 133 v~G~~R~~~le~laGe~~teTihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v--------~~GE~V~DmFAGVGpfsi 204 (341)
T COG2520 133 VAGEFRVPRLEVLAGERRTETIHRENGCRFKVDVAKVYFSPRLSTERARVAELV--------KEGETVLDMFAGVGPFSI 204 (341)
T ss_pred cCCeEeccceEEeecCCCceEEEecCCEEEEEchHHeEECCCchHHHHHHHhhh--------cCCCEEEEccCCcccchh
Confidence 45666777899999998 4556678999999964 44444444444433332 348999999999999999
Q ss_pred HHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhC
Q 043853 84 TLARWVK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKL 161 (222)
Q Consensus 84 ~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l 161 (222)
.+|+.+. .|+|+|+||.+++++++|++.|++.+ +..+++|+.+..... ..+|-|+.+-|... ..-+..++..+
T Consensus 205 ~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~----~~aDrIim~~p~~a-~~fl~~A~~~~ 279 (341)
T COG2520 205 PIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL----GVADRIIMGLPKSA-HEFLPLALELL 279 (341)
T ss_pred hhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc----ccCCEEEeCCCCcc-hhhHHHHHHHh
Confidence 9998765 59999999999999999999999988 999999999987653 47999999987431 12222334445
Q ss_pred CCCcEEE
Q 043853 162 KAPRIVY 168 (222)
Q Consensus 162 ~~~~~v~ 168 (222)
+.++++.
T Consensus 280 k~~g~iH 286 (341)
T COG2520 280 KDGGIIH 286 (341)
T ss_pred hcCcEEE
Confidence 6677763
No 33
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.63 E-value=1.7e-14 Score=112.89 Aligned_cols=140 Identities=15% Similarity=0.141 Sum_probs=100.4
Q ss_pred eecCeeEEEcCCccccC-CHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHH
Q 043853 29 TLRGLTFQISANSFFQT-NTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDAC 106 (222)
Q Consensus 29 ~~~~~~~~~~~~~f~~~-~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~ 106 (222)
++.|..+..+++.+..+ .....+.+..++...+ ++.++||+|||+|.+++.++.++ ..++++|.++.+++.++
T Consensus 15 ~~kg~~l~~p~~~~~rpt~~~vrea~f~~l~~~~-----~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~ 89 (189)
T TIGR00095 15 WRGGRLLKLPPGGSTRPTTRVVRELFFNILRPEI-----QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK 89 (189)
T ss_pred hhCCcccCCCCCCCCCCchHHHHHHHHHHHHHhc-----CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 35667777666665433 3334445555444332 36899999999999999887654 49999999999999999
Q ss_pred HHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCC-CccHHHHHHHHh---CCCCcEEEEeeCc
Q 043853 107 RNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-GMHMKLIKFLLK---LKAPRIVYVSCNP 173 (222)
Q Consensus 107 ~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~-~~~~~~~~~l~~---l~~~~~v~~~~~~ 173 (222)
+|++.++++ +++++++|+.++...+......||+|+.|||+. .....+++.+.. +++++++++....
T Consensus 90 ~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 90 ENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred HHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 999999986 599999999776543322222589999999964 445556665544 5677877766543
No 34
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.63 E-value=4.2e-15 Score=106.26 Aligned_cols=100 Identities=29% Similarity=0.401 Sum_probs=76.2
Q ss_pred CCeEEEEecccchhHHHHhh--cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 68 SEIVLDLFCGTGTIGLTLAR--WVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~--~~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
+.+|||+|||+|.+++.+++ .+.+++|+|+||.+++.|++++...+. ++++++++|+ ...... .++||+|+++
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~---~~~~D~v~~~ 77 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF---LEPFDLVICS 77 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT---SSCEEEEEEC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc---CCCCCEEEEC
Confidence 67999999999999999998 677999999999999999999966655 4699999999 332222 2479999998
Q ss_pred C-CCCCcc-----HHHHHHH-HhCCCCcEEEEee
Q 043853 145 P-NRPGMH-----MKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 145 p-p~~~~~-----~~~~~~l-~~l~~~~~v~~~~ 171 (222)
. ....+. ..+++.+ ..++|+|.++++.
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 7 211122 2334444 3478999988764
No 35
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.62 E-value=4.7e-14 Score=120.75 Aligned_cols=132 Identities=20% Similarity=0.181 Sum_probs=94.9
Q ss_pred CeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHH
Q 043853 32 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNA 109 (222)
Q Consensus 32 ~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~ 109 (222)
+..+.-.++.|.....+.-.++ +.+.+... ...+|||+|||+|.+++.+++.. .+++++|+|+.+++.|++|+
T Consensus 198 ~~~~~~~~gVFs~~~LD~Gtrl---lL~~lp~~--~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~ 272 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARF---FMQHLPEN--LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV 272 (378)
T ss_pred eEEEEecCCccCCCCcChHHHH---HHHhCCcc--cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 4555556899998766644332 33333222 24689999999999999998865 48999999999999999999
Q ss_pred HHcCCC---cEEEEeCchhchhhhcCCCCCCCcEEEECCCCC-C------ccHHHHHHH-HhCCCCcEEEEeeCc
Q 043853 110 KLNNIS---NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-G------MHMKLIKFL-LKLKAPRIVYVSCNP 173 (222)
Q Consensus 110 ~~~~~~---~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~-~------~~~~~~~~l-~~l~~~~~v~~~~~~ 173 (222)
+.++.+ ++++..+|..+... ...||+|++|||.. + ...+++... +.++++|.+++..+.
T Consensus 273 ~~n~~~~~~~v~~~~~D~l~~~~-----~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 273 ETNMPEALDRCEFMINNALSGVE-----PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred HHcCcccCceEEEEEccccccCC-----CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 988753 58999999865332 13799999999942 1 112333333 348999999988653
No 36
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.61 E-value=4.5e-14 Score=108.07 Aligned_cols=130 Identities=22% Similarity=0.203 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchh
Q 043853 48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125 (222)
Q Consensus 48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~ 125 (222)
++++.-++. ..+..+.+.+++.++|+|||||++++.++..+ .+++++|.++++++..++|++.+|++|++++.+|+.
T Consensus 16 p~TK~EIRa-l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap 94 (187)
T COG2242 16 PMTKEEIRA-LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP 94 (187)
T ss_pred CCcHHHHHH-HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch
Confidence 344443332 23334445568999999999999999888544 499999999999999999999999999999999999
Q ss_pred chhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHh-CCCCcEEEEee-CccchHhhHHHhh
Q 043853 126 KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK-LKAPRIVYVSC-NPATCARDLDYLC 184 (222)
Q Consensus 126 ~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~-l~~~~~v~~~~-~~~~~~~~~~~l~ 184 (222)
+.+..+ ..||.||..-- .+ ...+++.+.. ++++|.+.... ..++....++.+.
T Consensus 95 ~~L~~~----~~~daiFIGGg-~~-i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~ 149 (187)
T COG2242 95 EALPDL----PSPDAIFIGGG-GN-IEEILEAAWERLKPGGRLVANAITLETLAKALEALE 149 (187)
T ss_pred HhhcCC----CCCCEEEECCC-CC-HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHH
Confidence 887643 26999999876 33 4666666544 78888877665 3455555666664
No 37
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.61 E-value=3.3e-14 Score=109.36 Aligned_cols=140 Identities=24% Similarity=0.316 Sum_probs=108.8
Q ss_pred eecCeeEEEcCC-ccccCCHHHHHHHHHHHHHH-hcCCCCCCCeEEEEecccchhHH-HHhhcCCeEEEEeCCHHHHHHH
Q 043853 29 TLRGLTFQISAN-SFFQTNTHQAEVLYKLIEDC-AGLRDDGSEIVLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDA 105 (222)
Q Consensus 29 ~~~~~~~~~~~~-~f~~~~~~~~~~~~~~i~~~-~~~~~~~~~~vlDlg~G~G~~~~-~la~~~~~v~gvD~~~~~i~~a 105 (222)
++.|.++.++++ +..|+.....+.+.+++... + ++.++||+++|||.+++ ++++++..++.+|.|..+++.+
T Consensus 8 ~~kgr~L~~p~~~~~RPT~drVREalFNil~~~~i-----~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l 82 (187)
T COG0742 8 KYKGRKLKTPDGPGTRPTTDRVREALFNILAPDEI-----EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKIL 82 (187)
T ss_pred cccCCcccCCCCCCcCCCchHHHHHHHHhcccccc-----CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHH
Confidence 467888888875 66777667788777777652 3 47899999999999999 6667788999999999999999
Q ss_pred HHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCC-CccHHHHHHHH-----hCCCCcEEEEeeCcc
Q 043853 106 CRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-GMHMKLIKFLL-----KLKAPRIVYVSCNPA 174 (222)
Q Consensus 106 ~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~-~~~~~~~~~l~-----~l~~~~~v~~~~~~~ 174 (222)
++|++..++. +++++..|+..+....... +.||+|++|||+. ++.......+. .+++++++|+..+..
T Consensus 83 ~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 83 KENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 9999999865 4999999999776655432 2599999999966 44432333322 278999999888764
No 38
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.61 E-value=4.9e-14 Score=116.43 Aligned_cols=140 Identities=25% Similarity=0.264 Sum_probs=102.5
Q ss_pred eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHH
Q 043853 28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDA 105 (222)
Q Consensus 28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a 105 (222)
..+++..|.++++.+.+ .+.++.+.+++...... .++.+|||+|||+|.+++.++... .+++|+|+|+.+++.|
T Consensus 73 ~~f~~~~~~~~~~~lip--r~~te~l~~~~~~~~~~--~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a 148 (275)
T PRK09328 73 AEFWGLDFKVSPGVLIP--RPETEELVEWALEALLL--KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVA 148 (275)
T ss_pred ceEcCcEEEECCCceeC--CCCcHHHHHHHHHhccc--cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 45788899999998876 35566677766644332 236789999999999999998765 5999999999999999
Q ss_pred HHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc----------------------------HHHHHH
Q 043853 106 CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH----------------------------MKLIKF 157 (222)
Q Consensus 106 ~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~----------------------------~~~~~~ 157 (222)
++|+......+++++++|+.+... .+.||+|++|||+.... ..+++.
T Consensus 149 ~~n~~~~~~~~i~~~~~d~~~~~~-----~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~ 223 (275)
T PRK09328 149 RRNAKHGLGARVEFLQGDWFEPLP-----GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQ 223 (275)
T ss_pred HHHHHhCCCCcEEEEEccccCcCC-----CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHH
Confidence 999983333469999999865432 24799999999943211 112222
Q ss_pred H-HhCCCCcEEEEeeCccch
Q 043853 158 L-LKLKAPRIVYVSCNPATC 176 (222)
Q Consensus 158 l-~~l~~~~~v~~~~~~~~~ 176 (222)
+ ..++++|.+++..+....
T Consensus 224 ~~~~Lk~gG~l~~e~g~~~~ 243 (275)
T PRK09328 224 APRYLKPGGWLLLEIGYDQG 243 (275)
T ss_pred HHHhcccCCEEEEEECchHH
Confidence 2 347899999988765433
No 39
>PRK14967 putative methyltransferase; Provisional
Probab=99.61 E-value=7.9e-14 Score=112.00 Aligned_cols=143 Identities=20% Similarity=0.213 Sum_probs=98.4
Q ss_pred ecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHH
Q 043853 30 LRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRN 108 (222)
Q Consensus 30 ~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n 108 (222)
+.+..+..+++.|.+.. .++.+.+++... .. .++.+|||+|||+|.+++.+++.+. +++++|+|+.+++.+++|
T Consensus 4 ~~~~~~~~~~g~~~p~~--ds~~l~~~l~~~-~~--~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n 78 (223)
T PRK14967 4 TPPDALLRAPGVYRPQE--DTQLLADALAAE-GL--GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLN 78 (223)
T ss_pred CCCceeecCCCCcCCCC--cHHHHHHHHHhc-cc--CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH
Confidence 34566777788887643 334444444332 22 2467999999999999998887654 999999999999999999
Q ss_pred HHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc-----------------------cHHHHHH-HHhCCCC
Q 043853 109 AKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM-----------------------HMKLIKF-LLKLKAP 164 (222)
Q Consensus 109 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~-----------------------~~~~~~~-l~~l~~~ 164 (222)
++.++. +++++++|+.+... .+.||+|++|||+... ...+++. ...++++
T Consensus 79 ~~~~~~-~~~~~~~d~~~~~~-----~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g 152 (223)
T PRK14967 79 ALLAGV-DVDVRRGDWARAVE-----FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG 152 (223)
T ss_pred HHHhCC-eeEEEECchhhhcc-----CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC
Confidence 998887 58899999876432 2479999999984311 1223333 3448899
Q ss_pred cEEEEeeCcc-chHhhHHHh
Q 043853 165 RIVYVSCNPA-TCARDLDYL 183 (222)
Q Consensus 165 ~~v~~~~~~~-~~~~~~~~l 183 (222)
|.+++..... .....+..+
T Consensus 153 G~l~~~~~~~~~~~~~~~~l 172 (223)
T PRK14967 153 GSLLLVQSELSGVERTLTRL 172 (223)
T ss_pred cEEEEEEecccCHHHHHHHH
Confidence 9887654332 333344444
No 40
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.60 E-value=5.4e-14 Score=109.18 Aligned_cols=123 Identities=23% Similarity=0.236 Sum_probs=90.7
Q ss_pred CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR 147 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~ 147 (222)
+.+|||+|||+|.++..+++.+.+++++|+|+.+++.+++|++.++. ++++..+|+.+... +.||+|+++||.
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~------~~fD~Vi~n~p~ 92 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGVR------GKFDVILFNPPY 92 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccccC------CcccEEEECCCC
Confidence 57899999999999999998777999999999999999999998887 58999999876432 379999999984
Q ss_pred CCc-----------------------cHHHHHHH-HhCCCCcEEEEeeCccc-hHhhHHHhhccCCCCccCCCeEEeEee
Q 043853 148 PGM-----------------------HMKLIKFL-LKLKAPRIVYVSCNPAT-CARDLDYLCHGVGDQNIKGCYKLKSLQ 202 (222)
Q Consensus 148 ~~~-----------------------~~~~~~~l-~~l~~~~~v~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 202 (222)
... ...+++.+ +.++++|.+++...... ....+..+. +.||..+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~--------~~gf~~~~~~ 164 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLD--------ERGFRYEIVA 164 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHH--------hCCCeEEEEE
Confidence 211 12233333 33789888776654444 333344443 5678777766
Q ss_pred eec
Q 043853 203 PVD 205 (222)
Q Consensus 203 ~~~ 205 (222)
...
T Consensus 165 ~~~ 167 (179)
T TIGR00537 165 ERG 167 (179)
T ss_pred Eee
Confidence 544
No 41
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=6.5e-14 Score=114.78 Aligned_cols=131 Identities=25% Similarity=0.329 Sum_probs=99.5
Q ss_pred cCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHH
Q 043853 31 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRN 108 (222)
Q Consensus 31 ~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n 108 (222)
.+.+|.-.++.|.....+.-.+ ++.+.+.... ..+|||+|||.|.+++.+++..+ +++-+|+|..+++.||+|
T Consensus 127 ~~~~~~t~pGVFS~~~lD~GS~---lLl~~l~~~~--~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~N 201 (300)
T COG2813 127 HELTFKTLPGVFSRDKLDKGSR---LLLETLPPDL--GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN 201 (300)
T ss_pred CceEEEeCCCCCcCCCcChHHH---HHHHhCCccC--CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHh
Confidence 4677888899999876664443 3444443332 44999999999999999999876 999999999999999999
Q ss_pred HHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC-CCC--ccH----HHHHH-HHhCCCCcEEEEeeC
Q 043853 109 AKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN-RPG--MHM----KLIKF-LLKLKAPRIVYVSCN 172 (222)
Q Consensus 109 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-~~~--~~~----~~~~~-l~~l~~~~~v~~~~~ 172 (222)
+..|++++.++...|..+-.. ++||+|++||| +.+ ... +++.. ...|+++|-+++-.+
T Consensus 202 l~~N~~~~~~v~~s~~~~~v~------~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 202 LAANGVENTEVWASNLYEPVE------GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHHcCCCccEEEEeccccccc------ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999877788888876543 37999999999 222 112 33333 344899998887776
No 42
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.60 E-value=4.3e-14 Score=109.87 Aligned_cols=126 Identities=14% Similarity=0.058 Sum_probs=90.3
Q ss_pred CCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
+.+|||+|||+|.+++.++... .+++|+|.|+.+++.++++++.+++++++++++|+.++.. .+.||+|+++.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-----~~~fD~I~s~~ 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-----EEQFDVITSRA 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-----cCCccEEEehh
Confidence 6899999999999999887654 4899999999999999999999998789999999988532 24899999986
Q ss_pred CCCCccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeec
Q 043853 146 NRPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVD 205 (222)
Q Consensus 146 p~~~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 205 (222)
... ...+.+.+.. ++++|.+++...+.....-.... +.. .--|++.....+.+
T Consensus 118 -~~~-~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~-e~~----~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 118 -LAS-LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAK-RKC----QVLGVEPLEVPPLT 171 (181)
T ss_pred -hhC-HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHH-Hhh----hhcCceEeeccccC
Confidence 222 2445555443 79999988776544433322222 100 02366666655544
No 43
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.60 E-value=7.2e-14 Score=114.13 Aligned_cols=148 Identities=21% Similarity=0.293 Sum_probs=99.5
Q ss_pred cCeeEEEcCCc-cccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHH
Q 043853 31 RGLTFQISANS-FFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRN 108 (222)
Q Consensus 31 ~~~~~~~~~~~-f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n 108 (222)
+...+.++++. |....++.+...++.+.... .++.+|||+|||+|.+++.+++.+. +++|+|+|+.+++.|++|
T Consensus 86 ~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~----~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n 161 (250)
T PRK00517 86 DEINIELDPGMAFGTGTHPTTRLCLEALEKLV----LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAREN 161 (250)
T ss_pred CeEEEEECCCCccCCCCCHHHHHHHHHHHhhc----CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH
Confidence 44567788874 44444445555555555432 2478999999999999998877655 699999999999999999
Q ss_pred HHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHH-HHhCCCCcEEEEeeCccchHhhHHHhhcc
Q 043853 109 AKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKF-LLKLKAPRIVYVSCNPATCARDLDYLCHG 186 (222)
Q Consensus 109 ~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~-l~~l~~~~~v~~~~~~~~~~~~~~~l~~~ 186 (222)
++.+++. .+.+..+|. .||+|++|.....+ ..+... .+.++++|.++++.-......++...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~------------~fD~Vvani~~~~~-~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~- 227 (250)
T PRK00517 162 AELNGVELNVYLPQGDL------------KADVIVANILANPL-LELAPDLARLLKPGGRLILSGILEEQADEVLEAYE- 227 (250)
T ss_pred HHHcCCCceEEEccCCC------------CcCEEEEcCcHHHH-HHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHH-
Confidence 9998873 344433321 59999998753322 334433 3448999999988654444444433332
Q ss_pred CCCCccCCCeEEeEee
Q 043853 187 VGDQNIKGCYKLKSLQ 202 (222)
Q Consensus 187 ~~~~~~~~~~~~~~~~ 202 (222)
+.||++....
T Consensus 228 ------~~Gf~~~~~~ 237 (250)
T PRK00517 228 ------EAGFTLDEVL 237 (250)
T ss_pred ------HCCCEEEEEE
Confidence 5677776543
No 44
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.59 E-value=9e-15 Score=105.41 Aligned_cols=102 Identities=24% Similarity=0.307 Sum_probs=78.8
Q ss_pred CCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
+.+|||+|||+|.+++.+++.+ .+++|+|++|.+++.|+.|+..++.+ +++++++|+.+...... .++||+|++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~--~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLP--DGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCT--TT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhcc--CceeEEEEECC
Confidence 3589999999999999888877 79999999999999999999999884 59999999988874332 35899999999
Q ss_pred CCCCc----------cHHHHHHH-HhCCCCcEEEEee
Q 043853 146 NRPGM----------HMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 146 p~~~~----------~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
|+... ...+++.+ +.++++|.+++..
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 95432 23444444 3478888876543
No 45
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.59 E-value=4.8e-14 Score=111.57 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=89.6
Q ss_pred CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCch-hchhhhcCCCCCCCcEEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDL-NKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~-~~~~~~~~~~~~~fD~ii~ 143 (222)
++.+|||+|||+|..+..+++.. .+++|+|+|+.+++.|++++..++.++++++++|+ ..+...+. ...||.|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~--~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFP--DGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcC--ccccceEEE
Confidence 46899999999999999988754 48999999999999999999998888899999999 55432221 247999998
Q ss_pred CCCCCC----------ccHHHHHHHH-hCCCCcEEEEeeCccchHhhHHHhh
Q 043853 144 DPNRPG----------MHMKLIKFLL-KLKAPRIVYVSCNPATCARDLDYLC 184 (222)
Q Consensus 144 ~pp~~~----------~~~~~~~~l~-~l~~~~~v~~~~~~~~~~~~~~~l~ 184 (222)
+.|... ....+++.+. .++|+|.+++.++......++....
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~ 169 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVL 169 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH
Confidence 754211 1355666654 4899999999988777776655444
No 46
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.58 E-value=8.8e-14 Score=115.83 Aligned_cols=141 Identities=22% Similarity=0.250 Sum_probs=99.3
Q ss_pred cCeeEEEcCCccccCCHHHHHHHH-HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHH
Q 043853 31 RGLTFQISANSFFQTNTHQAEVLY-KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRN 108 (222)
Q Consensus 31 ~~~~~~~~~~~f~~~~~~~~~~~~-~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n 108 (222)
+...+.++++..|.+..+.+..++ +++.... .++.+|||+|||+|.+++.+++.+ .+++|+|+|+.+++.|++|
T Consensus 126 ~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~----~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n 201 (288)
T TIGR00406 126 DALIIMLDPGLAFGTGTHPTTSLCLEWLEDLD----LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKN 201 (288)
T ss_pred CcEEEEECCCCcccCCCCHHHHHHHHHHHhhc----CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHH
Confidence 557788888877766555555443 4333332 246899999999999999888764 4899999999999999999
Q ss_pred HHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEeeCccchHhhHHH
Q 043853 109 AKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNPATCARDLDY 182 (222)
Q Consensus 109 ~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~~~~~~~~~~ 182 (222)
+..+++.. +.+..++..... .+.||+|++|.....+ ..++..+ +.++|+|.++++.-......++..
T Consensus 202 ~~~n~~~~~~~~~~~~~~~~~------~~~fDlVvan~~~~~l-~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~ 270 (288)
T TIGR00406 202 AELNQVSDRLQVKLIYLEQPI------EGKADVIVANILAEVI-KELYPQFSRLVKPGGWLILSGILETQAQSVCD 270 (288)
T ss_pred HHHcCCCcceEEEeccccccc------CCCceEEEEecCHHHH-HHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHH
Confidence 99998864 677777633221 1479999998753322 2344433 448999999988754444444443
No 47
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.58 E-value=1.1e-13 Score=108.11 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=82.3
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc
Q 043853 54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF 131 (222)
Q Consensus 54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~ 131 (222)
...+.+.+... ++.+|||+|||+|.+++.+++.. .+++++|+|+.+++.|++|++.+++++++++++|+....
T Consensus 20 r~~~~~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~--- 94 (187)
T PRK08287 20 RALALSKLELH--RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIEL--- 94 (187)
T ss_pred HHHHHHhcCCC--CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhc---
Confidence 33444554433 47899999999999999888764 489999999999999999999988878999999974321
Q ss_pred CCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEee
Q 043853 132 GNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 132 ~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
. +.||+|+++.....+ ..+++.+ ..++++|.+++..
T Consensus 95 ~---~~~D~v~~~~~~~~~-~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 95 P---GKADAIFIGGSGGNL-TAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred C---cCCCEEEECCCccCH-HHHHHHHHHhcCCCeEEEEEE
Confidence 1 379999997653333 4455543 4589999987754
No 48
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.58 E-value=2.4e-14 Score=108.17 Aligned_cols=104 Identities=29% Similarity=0.382 Sum_probs=81.0
Q ss_pred CCCeEEEEecccchhHHHHhh-c--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLAR-W--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~-~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
++.+|||+|||+|.++..+++ . ..+++|+|+|+.+++.|+++++.++.++++++++|+.++...+. +.||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~---~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE---EKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS---TTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC---CCeeEEEE
Confidence 478999999999999999994 3 45999999999999999999999999899999999999542211 48999999
Q ss_pred CCCC--CCccHHHHHHH-HhCCCCcEEEEeeCc
Q 043853 144 DPNR--PGMHMKLIKFL-LKLKAPRIVYVSCNP 173 (222)
Q Consensus 144 ~pp~--~~~~~~~~~~l-~~l~~~~~v~~~~~~ 173 (222)
+.+. ......+++.+ +.++++|.+++....
T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp ESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9763 22233455554 447888888766543
No 49
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.57 E-value=2.2e-13 Score=106.32 Aligned_cols=135 Identities=21% Similarity=0.162 Sum_probs=95.5
Q ss_pred CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
++.+|||+|||+|..++.+++. ..+++|+|.++.+++.|+++++.+++++++++++|+.++.. .++||+|+++
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-----~~~fDlV~~~ 119 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-----EEKFDVVTSR 119 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-----CCCccEEEEc
Confidence 3789999999999999988763 45999999999999999999999999889999999988643 2479999997
Q ss_pred CCCCCccHHHHHHH-HhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeecc--CCCCCceeEE
Q 043853 145 PNRPGMHMKLIKFL-LKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDM--FPHTPHIECV 216 (222)
Q Consensus 145 pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~v 216 (222)
.- .. ...+.+.+ +.++|+|.+++..... ....+..+.+ ..||.+...-.+.. ....+|+.++
T Consensus 120 ~~-~~-~~~~l~~~~~~LkpGG~lv~~~~~~-~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (187)
T PRK00107 120 AV-AS-LSDLVELCLPLLKPGGRFLALKGRD-PEEEIAELPK-------ALGGKVEEVIELTLPGLDGERHLVII 184 (187)
T ss_pred cc-cC-HHHHHHHHHHhcCCCeEEEEEeCCC-hHHHHHHHHH-------hcCceEeeeEEEecCCCCCcEEEEEE
Confidence 42 22 34555554 4589999988765443 3333443332 44776665444331 2234455443
No 50
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.56 E-value=1.7e-13 Score=108.07 Aligned_cols=114 Identities=20% Similarity=0.264 Sum_probs=84.3
Q ss_pred CCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
.++.+|||+|||+|.+++.+++. ..+++++|+++.+++.|++|++.+++ ++++++.+|..+...... +.||.|
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~---~~~D~V 115 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTIN---EKFDRI 115 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcC---CCCCEE
Confidence 35789999999999999988763 34899999999999999999999985 569999999987644321 479999
Q ss_pred EECCCCCCccHHHHHHH-HhCCCCcEEEEee-CccchHhhHHHh
Q 043853 142 ISDPNRPGMHMKLIKFL-LKLKAPRIVYVSC-NPATCARDLDYL 183 (222)
Q Consensus 142 i~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~-~~~~~~~~~~~l 183 (222)
+++.....+ ..+++.+ ..++|+|.++++. ...+.......+
T Consensus 116 ~~~~~~~~~-~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 158 (198)
T PRK00377 116 FIGGGSEKL-KEIISASWEIIKKGGRIVIDAILLETVNNALSAL 158 (198)
T ss_pred EECCCcccH-HHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHH
Confidence 997643333 4455544 4478988877644 333434444444
No 51
>PLN02672 methionine S-methyltransferase
Probab=99.55 E-value=2.3e-13 Score=128.67 Aligned_cols=114 Identities=22% Similarity=0.255 Sum_probs=88.7
Q ss_pred eeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHH
Q 043853 27 TETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISD 104 (222)
Q Consensus 27 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~ 104 (222)
...++|+.|.+.++.|.|. +.++.+++.+..... ..-++.+|||+|||+|.+++.+++.. .+++|+|+|+.+++.
T Consensus 81 ~~~F~~l~~~V~p~VLIPR--peTE~lve~L~~~~~-~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~ 157 (1082)
T PLN02672 81 FRNRKKLTMMEIPSIFIPE--DWSFTFYEGLNRHPD-SIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKV 157 (1082)
T ss_pred eEEecCCceeeCCCcccCc--hhHHHHHHHHHhccc-ccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 3478999999999999984 677777776432210 00024689999999999999998764 489999999999999
Q ss_pred HHHHHHHcCC----------------CcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 105 ACRNAKLNNI----------------SNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 105 a~~n~~~~~~----------------~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
|++|++.|++ ++++++++|+.+..... ..+||+|++|||
T Consensus 158 A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~---~~~fDlIVSNPP 212 (1082)
T PLN02672 158 AWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN---NIELDRIVGCIP 212 (1082)
T ss_pred HHHHHHHcCcccccccccccccccccccEEEEECchhhhcccc---CCceEEEEECCC
Confidence 9999998753 25999999998764321 126999999999
No 52
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.55 E-value=1.3e-13 Score=116.91 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhch
Q 043853 48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127 (222)
Q Consensus 48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~ 127 (222)
.+.+.+...+..+.... ++..|||+|||+|++++.++..+.+++|+|+|+.|++.|+.|++..+++++++.++|+.++
T Consensus 165 ~l~~~la~~~~~l~~~~--~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l 242 (329)
T TIGR01177 165 SMDPKLARAMVNLARVT--EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL 242 (329)
T ss_pred CCCHHHHHHHHHHhCCC--CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC
Confidence 34555566666655443 4789999999999999988877889999999999999999999999998889999999886
Q ss_pred hhhcCCCCCCCcEEEECCCCCC-----------ccHHHHHHHHh-CCCCcEEEEee
Q 043853 128 GGDFGNAFPKPDIVISDPNRPG-----------MHMKLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 128 ~~~~~~~~~~fD~ii~~pp~~~-----------~~~~~~~~l~~-l~~~~~v~~~~ 171 (222)
+.. .+.||+|++|||+.. +...+++.+.+ ++++|.+.+..
T Consensus 243 ~~~----~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 243 PLS----SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred Ccc----cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 542 247999999999421 12344444443 78888765444
No 53
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.55 E-value=1.9e-13 Score=107.55 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=90.6
Q ss_pred CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
+..++||+|||+|.++..+++..+ +++|+|+++.+++.|++++...+++|++++++|+.+++.... +...+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~-~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF-PDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-CCCceeEEEEE
Confidence 467999999999999999998654 899999999999999999999998899999999988654322 22479999998
Q ss_pred CCCC----------CccHHHHHHHHh-CCCCcEEEEeeCccchHhhH-HHh
Q 043853 145 PNRP----------GMHMKLIKFLLK-LKAPRIVYVSCNPATCARDL-DYL 183 (222)
Q Consensus 145 pp~~----------~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~-~~l 183 (222)
+|.. -....+++.+.+ |+++|.+++.++.......+ +.+
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~ 145 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVL 145 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 6521 122456666544 89999999998877655554 444
No 54
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.55 E-value=1.9e-13 Score=116.04 Aligned_cols=130 Identities=20% Similarity=0.247 Sum_probs=95.3
Q ss_pred cCeeEEEcCCccccCCHHHHH-HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHH
Q 043853 31 RGLTFQISANSFFQTNTHQAE-VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACR 107 (222)
Q Consensus 31 ~~~~~~~~~~~f~~~~~~~~~-~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~ 107 (222)
.++.+...+++|.+.+..... .+.+.+ ... ...+|||+|||+|.+++.+++..+ +++++|+|+.+++.|++
T Consensus 165 ~~l~i~~~pgvFs~~~lD~gt~lLl~~l----~~~--~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~ 238 (342)
T PRK09489 165 DGLTVKTLPGVFSRDGLDVGSQLLLSTL----TPH--TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRA 238 (342)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHhc----ccc--CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 466788889999998765443 333322 111 245899999999999999988654 89999999999999999
Q ss_pred HHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC-Cc------cHHHHHHH-HhCCCCcEEEEeeCc
Q 043853 108 NAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP-GM------HMKLIKFL-LKLKAPRIVYVSCNP 173 (222)
Q Consensus 108 n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~-~~------~~~~~~~l-~~l~~~~~v~~~~~~ 173 (222)
|++.++++ .+++.+|..+.. .+.||+|++|||.. +. ...++... +.++++|.+++..+.
T Consensus 239 nl~~n~l~-~~~~~~D~~~~~------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 239 TLAANGLE-GEVFASNVFSDI------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred HHHHcCCC-CEEEEccccccc------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 99999875 677888875532 14799999999942 11 13444433 348999998877754
No 55
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.54 E-value=4.5e-13 Score=97.14 Aligned_cols=110 Identities=26% Similarity=0.372 Sum_probs=82.3
Q ss_pred HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcC
Q 043853 55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG 132 (222)
Q Consensus 55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 132 (222)
..+.+.+... ++.+|||+|||+|.++..+++.. .+++++|.++.+++.++++++.++.++++++.+|+.......
T Consensus 9 ~~~~~~~~~~--~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~- 85 (124)
T TIGR02469 9 ALTLSKLRLR--PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS- 85 (124)
T ss_pred HHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh-
Confidence 3344444332 36799999999999999998764 489999999999999999999988878999999976533221
Q ss_pred CCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEe
Q 043853 133 NAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVS 170 (222)
Q Consensus 133 ~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~ 170 (222)
.++||+|++..+.... ..+++.+ +.++++|.++++
T Consensus 86 --~~~~D~v~~~~~~~~~-~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 86 --LPEPDRVFIGGSGGLL-QEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred --cCCCCEEEECCcchhH-HHHHHHHHHHcCCCCEEEEE
Confidence 1479999998653333 3445544 448999998865
No 56
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.53 E-value=1.2e-13 Score=115.13 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=115.7
Q ss_pred ccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEE
Q 043853 41 SFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFV 120 (222)
Q Consensus 41 ~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~ 120 (222)
.|+.+ ..+.+++.+.+.++..... ++.|||.+||||++.+.+...+.+++|+|++..|++.|+.|++..++++..+.
T Consensus 174 Pf~~p-~s~~P~lAR~mVNLa~v~~--G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~ 250 (347)
T COG1041 174 PFFRP-GSMDPRLARAMVNLARVKR--GELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVL 250 (347)
T ss_pred CccCc-CCcCHHHHHHHHHHhcccc--CCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEE
Confidence 55554 5677778888888877665 88999999999999999998899999999999999999999999999887667
Q ss_pred eC-chhchhhhcCCCCCCCcEEEECCCCC-----------CccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhhccC
Q 043853 121 QG-DLNKIGGDFGNAFPKPDIVISDPNRP-----------GMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGV 187 (222)
Q Consensus 121 ~~-d~~~~~~~~~~~~~~fD~ii~~pp~~-----------~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~~~~ 187 (222)
.. |+...+. . .+.+|.|++|||+. .+..++++.+.. ++++|.+.+.... .....+.
T Consensus 251 ~~~Da~~lpl--~--~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~----~~~~~~~--- 319 (347)
T COG1041 251 KVLDATNLPL--R--DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR----DPRHELE--- 319 (347)
T ss_pred EecccccCCC--C--CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC----cchhhHh---
Confidence 66 9988873 2 23699999999931 123455555544 6777765545441 1222221
Q ss_pred CCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853 188 GDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221 (222)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~ 221 (222)
+.+|++.. .+.++-|.+--..|.++++
T Consensus 320 -----~~~f~v~~--~~~~~~H~sLtR~i~v~~~ 346 (347)
T COG1041 320 -----ELGFKVLG--RFTMRVHGSLTRVIYVVRK 346 (347)
T ss_pred -----hcCceEEE--EEEEeecCceEEEEEEEec
Confidence 45677766 4455566665555555553
No 57
>PRK14968 putative methyltransferase; Provisional
Probab=99.52 E-value=7.9e-13 Score=102.95 Aligned_cols=125 Identities=22% Similarity=0.236 Sum_probs=89.6
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCc--EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN--ATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
++.++||+|||+|.++..+++...+++|+|+|+.+++.+++++..++..+ +.++++|+.+.... ..||+|++|
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~d~vi~n 97 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG-----DKFDVILFN 97 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc-----cCceEEEEC
Confidence 46799999999999999998888899999999999999999999888765 88999998664321 379999999
Q ss_pred CCCCCc-----------------------cHHHHHHH-HhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeE
Q 043853 145 PNRPGM-----------------------HMKLIKFL-LKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKS 200 (222)
Q Consensus 145 pp~~~~-----------------------~~~~~~~l-~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 200 (222)
||.... ...+++.+ ..++++|.+++.........++..+.. +.||++..
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~-------~~g~~~~~ 170 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLE-------KLGFEAEV 170 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHH-------HCCCeeee
Confidence 984220 12233333 447888877655433222333443332 56787766
Q ss_pred eee
Q 043853 201 LQP 203 (222)
Q Consensus 201 ~~~ 203 (222)
...
T Consensus 171 ~~~ 173 (188)
T PRK14968 171 VAE 173 (188)
T ss_pred eee
Confidence 554
No 58
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.52 E-value=6e-13 Score=106.78 Aligned_cols=114 Identities=21% Similarity=0.227 Sum_probs=90.3
Q ss_pred eeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhc-CCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHH
Q 043853 28 ETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAG-LRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISD 104 (222)
Q Consensus 28 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~-~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~ 104 (222)
+.+.++.+...++.|.+ .+.++++++++.+... .....+..++|+|||+|.+++.++..- ..++|+|.|+.++..
T Consensus 110 ~~F~~l~l~~~pgVlIP--RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~L 187 (328)
T KOG2904|consen 110 QPFGDLDLVCKPGVLIP--RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKL 187 (328)
T ss_pred CccCCceEEecCCeeec--CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHH
Confidence 45678899999999998 5789999999888764 222235689999999999999887653 389999999999999
Q ss_pred HHHHHHHcCCCc-EEEEe----CchhchhhhcCCCCCCCcEEEECCC
Q 043853 105 ACRNAKLNNISN-ATFVQ----GDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 105 a~~n~~~~~~~~-v~~~~----~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
|.+|++.+++.+ +.+++ .|+.+-... ..++.|++++|||
T Consensus 188 a~eN~qr~~l~g~i~v~~~~me~d~~~~~~l---~~~~~dllvsNPP 231 (328)
T KOG2904|consen 188 AKENAQRLKLSGRIEVIHNIMESDASDEHPL---LEGKIDLLVSNPP 231 (328)
T ss_pred HHHHHHHHhhcCceEEEeccccccccccccc---ccCceeEEecCCC
Confidence 999999999986 77774 444332221 2358999999999
No 59
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.51 E-value=2e-13 Score=108.32 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=83.1
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhh
Q 043853 54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGG 129 (222)
Q Consensus 54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~ 129 (222)
...+.+.+... ++.+|||+|||+|..+..+++.. .+++++|+++.+++.|++|++.++.++ ++++.+|+.+...
T Consensus 61 ~~~~~~~l~~~--~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 61 VAMMCELIEPR--PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHhcCCC--CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 34444544433 47899999999999999888653 599999999999999999999998864 9999999976543
Q ss_pred hcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeC
Q 043853 130 DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCN 172 (222)
Q Consensus 130 ~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~ 172 (222)
. ...||.|+++.....+.. +....++++|.+++...
T Consensus 139 ~----~~~fD~Ii~~~~~~~~~~---~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 139 K----HAPFDAIIVTAAASTIPS---ALVRQLKDGGVLVIPVE 174 (205)
T ss_pred c----CCCccEEEEccCcchhhH---HHHHhcCcCcEEEEEEc
Confidence 2 247999999876443333 23345799999887653
No 60
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.51 E-value=7.6e-14 Score=105.67 Aligned_cols=104 Identities=25% Similarity=0.399 Sum_probs=71.1
Q ss_pred CeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPNR 147 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~ 147 (222)
+.|+|++||.|+.++.+|+.+.+|+++|+||..++.|++|++-.|+. +++++++|+.+....+... ..+|+|+++||+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~-~~~D~vFlSPPW 79 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSN-KIFDVVFLSPPW 79 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE---B
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcccc-ccccEEEECCCC
Confidence 37999999999999999999999999999999999999999999976 5999999999987654321 128999999994
Q ss_pred CCc------------------cHHHHHHHHhCCCCcEEEEeeCc
Q 043853 148 PGM------------------HMKLIKFLLKLKAPRIVYVSCNP 173 (222)
Q Consensus 148 ~~~------------------~~~~~~~l~~l~~~~~v~~~~~~ 173 (222)
.+. ..++.+....+.+.-++|+--+.
T Consensus 80 GGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~nv~l~LPRn~ 123 (163)
T PF09445_consen 80 GGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITPNVVLFLPRNS 123 (163)
T ss_dssp SSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S-EEEEEETTB
T ss_pred CCccccccCccCHHHccCCCCHHHHHHHHHhhCCCEEEEeCCCC
Confidence 331 12444444456666667766544
No 61
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=3.7e-13 Score=108.02 Aligned_cols=99 Identities=26% Similarity=0.313 Sum_probs=79.8
Q ss_pred CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
++.+|||+|||||-+++.+++.. .+|+|+|+|+.|++.|++.+...+..+++++++|+++++. +++.||++.+.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf----~D~sFD~vt~~ 126 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF----PDNSFDAVTIS 126 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC----CCCccCEEEee
Confidence 48999999999999999999876 5999999999999999999998888779999999999986 35689999876
Q ss_pred CC---CCCccHHHHHHHHhCCCCcEEEE
Q 043853 145 PN---RPGMHMKLIKFLLKLKAPRIVYV 169 (222)
Q Consensus 145 pp---~~~~~~~~~~~l~~l~~~~~v~~ 169 (222)
-- -......+.+..+.++|+|.+.+
T Consensus 127 fglrnv~d~~~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 127 FGLRNVTDIDKALKEMYRVLKPGGRLLV 154 (238)
T ss_pred ehhhcCCCHHHHHHHHHHhhcCCeEEEE
Confidence 53 11333333334455899886553
No 62
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=5.8e-13 Score=104.11 Aligned_cols=110 Identities=23% Similarity=0.210 Sum_probs=89.0
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853 54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN 133 (222)
Q Consensus 54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~ 133 (222)
...+.+.+...+ +++|||||||+|+.+..+|+...+|+++|..+...+.|++|++..|..||.++++|........
T Consensus 61 vA~m~~~L~~~~--g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~-- 136 (209)
T COG2518 61 VARMLQLLELKP--GDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE-- 136 (209)
T ss_pred HHHHHHHhCCCC--CCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC--
Confidence 344555555444 8999999999999999999998899999999999999999999999999999999998875532
Q ss_pred CCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeC
Q 043853 134 AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCN 172 (222)
Q Consensus 134 ~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~ 172 (222)
.+||.|+..-.-..+...+++.| +++|.+.+-..
T Consensus 137 --aPyD~I~Vtaaa~~vP~~Ll~QL---~~gGrlv~PvG 170 (209)
T COG2518 137 --APYDRIIVTAAAPEVPEALLDQL---KPGGRLVIPVG 170 (209)
T ss_pred --CCcCEEEEeeccCCCCHHHHHhc---ccCCEEEEEEc
Confidence 48999999765445555555555 78888776665
No 63
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.49 E-value=5.8e-13 Score=106.11 Aligned_cols=142 Identities=20% Similarity=0.225 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853 54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN 133 (222)
Q Consensus 54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~ 133 (222)
..++...+... ++.+|||+|||+|.++..+++...+++++|+++.+++.|+++++..+++++++..+|..+....
T Consensus 67 ~~~l~~~l~~~--~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~--- 141 (212)
T PRK00312 67 VARMTELLELK--PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA--- 141 (212)
T ss_pred HHHHHHhcCCC--CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc---
Confidence 33444444433 4789999999999999988877679999999999999999999999988899999998654321
Q ss_pred CCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCC
Q 043853 134 AFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTP 211 (222)
Q Consensus 134 ~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 211 (222)
.+.||+|+++.+...+... ....++++|.+++...... ...+..+.+ ..++|....+-.+.+.|..+
T Consensus 142 -~~~fD~I~~~~~~~~~~~~---l~~~L~~gG~lv~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~ 208 (212)
T PRK00312 142 -YAPFDRILVTAAAPEIPRA---LLEQLKEGGILVAPVGGEE-QQLLTRVRK------RGGRFEREVLEEVRFVPLVK 208 (212)
T ss_pred -CCCcCEEEEccCchhhhHH---HHHhcCCCcEEEEEEcCCC-ceEEEEEEE------cCCeEEEEEEccEEEEecCC
Confidence 2479999998765444322 2345789999887765221 111222211 13446665555555555554
No 64
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.49 E-value=6.2e-13 Score=104.83 Aligned_cols=96 Identities=25% Similarity=0.184 Sum_probs=76.1
Q ss_pred CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR 147 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~ 147 (222)
+.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++++..+++++++...|+.++... +.||+|++....
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~fD~I~~~~~~ 105 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-----GEYDFILSTVVL 105 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-----CCcCEEEEecch
Confidence 579999999999999999988889999999999999999999998887799999998765321 469999987541
Q ss_pred C----CccHHHHHHH-HhCCCCcEEE
Q 043853 148 P----GMHMKLIKFL-LKLKAPRIVY 168 (222)
Q Consensus 148 ~----~~~~~~~~~l-~~l~~~~~v~ 168 (222)
. .....+++.+ +.++|+|.++
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 1 1123444444 3479999854
No 65
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.49 E-value=1.1e-13 Score=107.48 Aligned_cols=127 Identities=24% Similarity=0.380 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--e---------EEEEeCCHHHHHHHHHHHHHcCCC
Q 043853 47 THQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--H---------VYGYEVVPQAISDACRNAKLNNIS 115 (222)
Q Consensus 47 ~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~---------v~gvD~~~~~i~~a~~n~~~~~~~ 115 (222)
..+.+.+...+..++... ++..+||.+||+|++.+..+.... . ++|+|+++.+++.|++|++..+++
T Consensus 10 a~L~~~lA~~ll~la~~~--~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~ 87 (179)
T PF01170_consen 10 APLRPTLAAALLNLAGWR--PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE 87 (179)
T ss_dssp TSS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C
T ss_pred CCCCHHHHHHHHHHhCCC--CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC
Confidence 345666777777776544 378999999999999997765322 3 889999999999999999999987
Q ss_pred c-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCC----------ccHHHHHHHHh-CCCCcEEEEeeCccchHhhH
Q 043853 116 N-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG----------MHMKLIKFLLK-LKAPRIVYVSCNPATCARDL 180 (222)
Q Consensus 116 ~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~----------~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~ 180 (222)
. +.+.+.|+.++... .+.+|+|++|||+.. +...+.+.+.+ +++ ..+++.+....+.+.+
T Consensus 88 ~~i~~~~~D~~~l~~~----~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~~~~~ 159 (179)
T PF01170_consen 88 DYIDFIQWDARELPLP----DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNRELEKAL 159 (179)
T ss_dssp GGEEEEE--GGGGGGT----TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCHHHHH
T ss_pred CceEEEecchhhcccc----cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHh
Confidence 6 99999999998721 247999999999431 22344455555 455 7677777665554443
No 66
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.49 E-value=9.1e-13 Score=106.51 Aligned_cols=103 Identities=18% Similarity=0.129 Sum_probs=81.7
Q ss_pred CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCC--CCCCcEE
Q 043853 68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNA--FPKPDIV 141 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~--~~~fD~i 141 (222)
.++|||+|||+|+-++.++.. ..+++++|+++++++.|++|++.+++.+ ++++.+|+.+....+... .+.||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 679999999999988877764 3499999999999999999999999865 999999998876544211 2479999
Q ss_pred EECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853 142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVS 170 (222)
Q Consensus 142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~ 170 (222)
++|.+...+...+...+..+++||+++++
T Consensus 149 fiDa~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 149 FVDADKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99987555443333345568999988754
No 67
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.48 E-value=1.2e-12 Score=104.35 Aligned_cols=112 Identities=19% Similarity=0.204 Sum_probs=84.3
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh
Q 043853 53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG 129 (222)
Q Consensus 53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~ 129 (222)
+...+.+.+... ++.+|||+|||+|+++..+++.. .+++++|+++.+++.|+++++..+..+++++++|..+...
T Consensus 64 ~~~~~~~~l~~~--~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 64 MVAIMCELLDLK--EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHHcCCC--CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 344445554433 47899999999999999888753 4999999999999999999999998889999999876543
Q ss_pred hcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853 130 DFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNP 173 (222)
Q Consensus 130 ~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~ 173 (222)
. ...||+|+++-....+...+ ...++++|.+++....
T Consensus 142 ~----~~~fD~I~~~~~~~~~~~~l---~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 142 E----NAPYDRIYVTAAGPDIPKPL---IEQLKDGGIMVIPVGS 178 (212)
T ss_pred c----CCCcCEEEECCCcccchHHH---HHhhCCCcEEEEEEcC
Confidence 2 24799999976433333322 3347999998876543
No 68
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.48 E-value=4.5e-12 Score=97.50 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=76.1
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
++.++||+|||+|.++..+++.+.+++++|+|+.+++.+++++.. .++++++++|+.++... ...||.|++|||
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~----~~~~d~vi~n~P 86 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLP----KLQPYKVVGNLP 86 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCcc----ccCCCEEEECCC
Confidence 467999999999999999988888999999999999999999854 34699999999887542 125999999999
Q ss_pred CCCccHHHHHHHH-h--CCCCcEEEEee
Q 043853 147 RPGMHMKLIKFLL-K--LKAPRIVYVSC 171 (222)
Q Consensus 147 ~~~~~~~~~~~l~-~--l~~~~~v~~~~ 171 (222)
+... ..++..+. . +.+++++++..
T Consensus 87 y~~~-~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 87 YNIS-TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cccH-HHHHHHHHhcCCCcceEEEEEEH
Confidence 7643 34444443 2 23566666554
No 69
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.48 E-value=5.5e-12 Score=99.32 Aligned_cols=111 Identities=19% Similarity=0.233 Sum_probs=81.6
Q ss_pred HHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853 56 LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN 133 (222)
Q Consensus 56 ~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~ 133 (222)
.+...+... ++.+|||+|||+|.+++.+++. ..+++++|+|+.+++.+++|++.+++++++++.+|+.+....+.
T Consensus 31 ~l~~~l~~~--~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~- 107 (196)
T PRK07402 31 LLISQLRLE--PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA- 107 (196)
T ss_pred HHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC-
Confidence 345555433 4789999999999999988764 35999999999999999999999988789999999876432221
Q ss_pred CCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEeeCc
Q 043853 134 AFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNP 173 (222)
Q Consensus 134 ~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~ 173 (222)
..+|.++.+... . ...+++.+ +.++++|.+++....
T Consensus 108 --~~~d~v~~~~~~-~-~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 108 --PAPDRVCIEGGR-P-IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --CCCCEEEEECCc-C-HHHHHHHHHHhcCCCeEEEEEeec
Confidence 246777776432 2 24555554 458899887766543
No 70
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.46 E-value=4.3e-13 Score=108.17 Aligned_cols=98 Identities=29% Similarity=0.337 Sum_probs=69.0
Q ss_pred CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
++.+|||+|||||.++..+++.. .+|+|+|+|+.|++.|+++++..+..+++++++|+.+++.. ++.||+|++
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~----d~sfD~v~~ 122 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFP----DNSFDAVTC 122 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-----TT-EEEEEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCC----CCceeEEEH
Confidence 47899999999999999988753 48999999999999999999998887899999999998753 368999987
Q ss_pred CCC---CCCccHHHHHHHHhCCCCcEEE
Q 043853 144 DPN---RPGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 144 ~pp---~~~~~~~~~~~l~~l~~~~~v~ 168 (222)
.-- -.+....+.+..+.++|||.+.
T Consensus 123 ~fglrn~~d~~~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 123 SFGLRNFPDRERALREMYRVLKPGGRLV 150 (233)
T ss_dssp ES-GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred HhhHHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 652 1233344444555589998765
No 71
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.46 E-value=1.5e-12 Score=107.08 Aligned_cols=80 Identities=20% Similarity=0.210 Sum_probs=68.5
Q ss_pred CCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
.++.+|||+|||+|+.++.+++.. ..|+++|+++.+++.+++|++.+++.++++++.|+..+... .+.||.|+
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~----~~~fD~Vl 145 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA----VPKFDAIL 145 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh----ccCCCEEE
Confidence 357899999999999999887642 48999999999999999999999998899999998775432 23699999
Q ss_pred ECCCCCC
Q 043853 143 SDPNRPG 149 (222)
Q Consensus 143 ~~pp~~~ 149 (222)
+|||..+
T Consensus 146 ~D~Pcsg 152 (264)
T TIGR00446 146 LDAPCSG 152 (264)
T ss_pred EcCCCCC
Confidence 9999654
No 72
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=1.7e-12 Score=106.31 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=79.6
Q ss_pred CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...++. +++++++|+.++.... .+.||+|+++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~---~~~fD~V~~~ 119 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL---ETPVDLILFH 119 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc---CCCCCEEEeh
Confidence 34679999999999999999998889999999999999999999988874 5999999998864321 2479999987
Q ss_pred CCC--CCccHHHHHHH-HhCCCCcEEEEe
Q 043853 145 PNR--PGMHMKLIKFL-LKLKAPRIVYVS 170 (222)
Q Consensus 145 pp~--~~~~~~~~~~l-~~l~~~~~v~~~ 170 (222)
... -.-...+++.+ +.++|+|.+.+.
T Consensus 120 ~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 120 AVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 541 11123444444 448999998754
No 73
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.46 E-value=1.2e-12 Score=103.06 Aligned_cols=95 Identities=18% Similarity=0.106 Sum_probs=73.4
Q ss_pred CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR 147 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~ 147 (222)
+.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++..++++ +++...|+...... +.||+|+++...
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~-----~~fD~I~~~~~~ 104 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAALN-----EDYDFIFSTVVF 104 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcccc-----CCCCEEEEeccc
Confidence 569999999999999999988889999999999999999999888875 78888887554321 379999987652
Q ss_pred CC----ccHHHHHHH-HhCCCCcEEE
Q 043853 148 PG----MHMKLIKFL-LKLKAPRIVY 168 (222)
Q Consensus 148 ~~----~~~~~~~~l-~~l~~~~~v~ 168 (222)
.. ....+++.+ +.++|+|.++
T Consensus 105 ~~~~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 105 MFLQAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 21 223444444 3479999744
No 74
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.45 E-value=8.7e-12 Score=104.97 Aligned_cols=100 Identities=21% Similarity=0.208 Sum_probs=78.8
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
++.+|||+|||+|.++..+++.+.+|+|+|.++.+++.|++++...+. .+++++++|+.++... .+.||+|++.-
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~----~~~FD~Vi~~~ 206 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE----GRKFDAVLSLE 206 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc----cCCCCEEEEhh
Confidence 467999999999999999998888999999999999999998876554 3599999999876532 24799998854
Q ss_pred C---CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853 146 N---RPGMHMKLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 146 p---~~~~~~~~~~~l~~-l~~~~~v~~~~ 171 (222)
. -.+ ...++..+.+ ++|+|.+++++
T Consensus 207 vLeHv~d-~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 207 VIEHVAN-PAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HHHhcCC-HHHHHHHHHHHcCCCcEEEEEE
Confidence 2 112 2455665554 79999998876
No 75
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.45 E-value=9.4e-13 Score=110.37 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=87.6
Q ss_pred ceeeeecCeeE-EEcCCccccCCHHHHHHHHHHHHHHhcCC------CCCCCeEEEEecccchhHHHHhhc--CCeEEEE
Q 043853 25 NITETLRGLTF-QISANSFFQTNTHQAEVLYKLIEDCAGLR------DDGSEIVLDLFCGTGTIGLTLARW--VKHVYGY 95 (222)
Q Consensus 25 ~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~i~~~~~~~------~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gv 95 (222)
.+-...+|+.+ .++.+...| ..+....++.++.+++... .....++||||||+|.+...++.. ..+++|+
T Consensus 66 alL~~~ygl~~wdip~~~LcP-piP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~at 144 (321)
T PRK11727 66 ALLAHFYGVAHWDIPAGYLCP-PIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGS 144 (321)
T ss_pred HHHHHhcCCCcccCCCCCcCC-CCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEE
Confidence 34445578875 555554444 4666667778888876421 124679999999999888877654 4599999
Q ss_pred eCCHHHHHHHHHHHHHc-CCCc-EEEEe-CchhchhhhcCCCCCCCcEEEECCCCC
Q 043853 96 EVVPQAISDACRNAKLN-NISN-ATFVQ-GDLNKIGGDFGNAFPKPDIVISDPNRP 148 (222)
Q Consensus 96 D~~~~~i~~a~~n~~~~-~~~~-v~~~~-~d~~~~~~~~~~~~~~fD~ii~~pp~~ 148 (222)
|+|+.+++.|++|++.| ++++ +++.. .|...+........+.||+|++|||.-
T Consensus 145 DId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 145 DIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred eCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCc
Confidence 99999999999999999 7864 88764 454444333222235899999999943
No 76
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.45 E-value=2.1e-12 Score=110.71 Aligned_cols=138 Identities=14% Similarity=0.165 Sum_probs=101.3
Q ss_pred eecCeeEEEc--CCccccCCHHHHHHHHHHHHHHh-cCCC-CCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHH
Q 043853 29 TLRGLTFQIS--ANSFFQTNTHQAEVLYKLIEDCA-GLRD-DGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQA 101 (222)
Q Consensus 29 ~~~~~~~~~~--~~~f~~~~~~~~~~~~~~i~~~~-~~~~-~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~ 101 (222)
++++..+.++ ..+||.+.......+.-.+.... .... ..+-+|||++||+|..++.++.. ..+|+++|+||.+
T Consensus 2 ~EG~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~A 81 (374)
T TIGR00308 2 KEGKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKA 81 (374)
T ss_pred ccceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHH
Confidence 3455666665 46898876665555433332221 1111 01248999999999999988864 3599999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHH-HhCCCCcEEEEee
Q 043853 102 ISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 102 i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
++.+++|++.|++++++++++|+..+..... ..||+|++||+ +....+++.+ ..+.++|++++++
T Consensus 82 v~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~---~~fDvIdlDPf--Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 82 VESIKNNVEYNSVENIEVPNEDAANVLRYRN---RKFHVIDIDPF--GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred HHHHHHHHHHhCCCcEEEEchhHHHHHHHhC---CCCCEEEeCCC--CCcHHHHHHHHHhcccCCEEEEEe
Confidence 9999999999999889999999998876432 47999999996 3444566544 5578889999886
No 77
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.45 E-value=6.2e-13 Score=105.42 Aligned_cols=100 Identities=22% Similarity=0.256 Sum_probs=82.0
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
++.+|||+|||-|.++..+|+.+.+|+|+|+++.+|+.|+..+..+++. +++.+.++.++... .++||+|+|.--
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~----~~~FDvV~cmEV 133 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASA----GGQFDVVTCMEV 133 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHhc----CCCccEEEEhhH
Confidence 4789999999999999999999999999999999999999999998885 88999999887653 258999998631
Q ss_pred ---CCCccHHHHHHHHh-CCCCcEEEEeeC
Q 043853 147 ---RPGMHMKLIKFLLK-LKAPRIVYVSCN 172 (222)
Q Consensus 147 ---~~~~~~~~~~~l~~-l~~~~~v~~~~~ 172 (222)
-.. ...++..+.. ++|+|++++|+-
T Consensus 134 lEHv~d-p~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 134 LEHVPD-PESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred HHccCC-HHHHHHHHHHHcCCCcEEEEecc
Confidence 112 2345555544 799999999983
No 78
>PLN02244 tocopherol O-methyltransferase
Probab=99.45 E-value=4.2e-12 Score=108.15 Aligned_cols=100 Identities=21% Similarity=0.181 Sum_probs=78.9
Q ss_pred CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++++..++. +++++++|+.+.+.. .+.||+|++.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~----~~~FD~V~s~ 193 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFE----DGQFDLVWSM 193 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCC----CCCccEEEEC
Confidence 4679999999999999999875 569999999999999999999988875 599999999876532 3589999986
Q ss_pred CC---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853 145 PN---RPGMHMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 145 pp---~~~~~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
-. ..+. ..++..+ +.++|+|.+++.+
T Consensus 194 ~~~~h~~d~-~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMPDK-RKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccCCH-HHHHHHHHHHcCCCcEEEEEE
Confidence 42 1222 3444444 5589999988754
No 79
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.44 E-value=5.8e-12 Score=101.52 Aligned_cols=101 Identities=22% Similarity=0.204 Sum_probs=78.0
Q ss_pred CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
++.+|||+|||+|.++..+++.. .+++|+|+++.+++.|+++++..+.++++++++|+.+.+.. .+.||+|++
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~~~fD~V~~ 120 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD----DNSFDYVTI 120 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC----CCCccEEEE
Confidence 47899999999999999888752 48999999999999999999888887899999999876431 257999998
Q ss_pred CCCC--CCccHHHHHH-HHhCCCCcEEEEee
Q 043853 144 DPNR--PGMHMKLIKF-LLKLKAPRIVYVSC 171 (222)
Q Consensus 144 ~pp~--~~~~~~~~~~-l~~l~~~~~v~~~~ 171 (222)
+... ......+++. .+.++|+|.+++..
T Consensus 121 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 121 GFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred ecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 7541 1112344444 44589999887654
No 80
>PLN02476 O-methyltransferase
Probab=99.44 E-value=2.9e-12 Score=105.24 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=84.2
Q ss_pred CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCC--CCCCCcEE
Q 043853 68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGN--AFPKPDIV 141 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~--~~~~fD~i 141 (222)
.++|||+|||+|+.++.+|.. ..+++++|.+++..+.|++|++..|+. +++++.+|+.+.+..+.. ..+.||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 689999999999999999875 348999999999999999999999997 499999999888765421 12479999
Q ss_pred EECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853 142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVS 170 (222)
Q Consensus 142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~ 170 (222)
|+|.++..+...+...+..++++|++.++
T Consensus 199 FIDa~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 199 FVDADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 99998766544444455668999987754
No 81
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.44 E-value=2.4e-12 Score=110.02 Aligned_cols=112 Identities=14% Similarity=0.116 Sum_probs=90.0
Q ss_pred CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
.+..+||+|||+|.+++.+|+..+ .++|+|+++.+++.|.+++..++++|+.++++|+..+...+. .+.+|.|+++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~--~~s~D~I~ln 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP--SNSVEKIFVH 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC--CCceeEEEEe
Confidence 467999999999999999998754 899999999999999999999999999999999987654332 3579999998
Q ss_pred CCCCC--------ccHHHHHHHHh-CCCCcEEEEeeCccchHhhH
Q 043853 145 PNRPG--------MHMKLIKFLLK-LKAPRIVYVSCNPATCARDL 180 (222)
Q Consensus 145 pp~~~--------~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~ 180 (222)
.|.+. ....+++.+.+ |+++|.+++.++........
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~ 244 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFS 244 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHH
Confidence 76221 22456666544 89999999988776666554
No 82
>PRK04266 fibrillarin; Provisional
Probab=99.43 E-value=1.8e-11 Score=98.30 Aligned_cols=102 Identities=21% Similarity=0.161 Sum_probs=73.9
Q ss_pred CCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
.++.+|||+|||+|.++..+++.. .+|+|+|+++.|++.+.++++.. +|+.++.+|+.+...... -.+.||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~-l~~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAH-VVEKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhh-ccccCCEEEE
Confidence 347899999999999999998864 48999999999999888887653 578999999875211000 0136999999
Q ss_pred CCCCCCccHHHHHHHH-hCCCCcEEEEe
Q 043853 144 DPNRPGMHMKLIKFLL-KLKAPRIVYVS 170 (222)
Q Consensus 144 ~pp~~~~~~~~~~~l~-~l~~~~~v~~~ 170 (222)
+.+.......+++.+. .++|+|.++++
T Consensus 148 d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 148 DVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 8653222223344443 48999998873
No 83
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.43 E-value=9.1e-12 Score=94.46 Aligned_cols=155 Identities=19% Similarity=0.160 Sum_probs=103.4
Q ss_pred ccccCCHHHHHHHHHHHHHHhcCC-C-CCCCeEEEEecccchhHHHHhhcC-C-eEEEEeCCHHHHHHHHHHHHHcCCCc
Q 043853 41 SFFQTNTHQAEVLYKLIEDCAGLR-D-DGSEIVLDLFCGTGTIGLTLARWV-K-HVYGYEVVPQAISDACRNAKLNNISN 116 (222)
Q Consensus 41 ~f~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~vlDlg~G~G~~~~~la~~~-~-~v~gvD~~~~~i~~a~~n~~~~~~~~ 116 (222)
.||. ....+++++|+.+.+... . .+..+|||+|||.|.+...|++.+ . +.+|+|.|+.+++.|+..++..+.+|
T Consensus 41 vWFg--~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n 118 (227)
T KOG1271|consen 41 VWFG--EDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSN 118 (227)
T ss_pred eecC--CcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCc
Confidence 5555 356777889998887521 1 134599999999999999998753 3 69999999999999999999999998
Q ss_pred -EEEEeCchhchhhhc-----CCCCCCCcEEEECCC----CCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhcc
Q 043853 117 -ATFVQGDLNKIGGDF-----GNAFPKPDIVISDPN----RPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHG 186 (222)
Q Consensus 117 -v~~~~~d~~~~~~~~-----~~~~~~fD~ii~~pp----~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~ 186 (222)
++|.+.|+.+..... .-+.+++|.|-++|- |..+....++.+ ++|+|+..+.++.-+.....+.+.
T Consensus 119 ~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~l--l~~~gifvItSCN~T~dELv~~f~-- 194 (227)
T KOG1271|consen 119 EIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKL--LSPGGIFVITSCNFTKDELVEEFE-- 194 (227)
T ss_pred ceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhc--cCCCcEEEEEecCccHHHHHHHHh--
Confidence 999999998752211 112234555555552 222333333333 467776554444445555566664
Q ss_pred CCCCccCCCeEEeEeeeeccC
Q 043853 187 VGDQNIKGCYKLKSLQPVDMF 207 (222)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~ 207 (222)
..++++....|...|
T Consensus 195 ------~~~f~~~~tvp~ptF 209 (227)
T KOG1271|consen 195 ------NFNFEYLSTVPTPTF 209 (227)
T ss_pred ------cCCeEEEEeeccceE
Confidence 556777776655443
No 84
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.42 E-value=7.6e-13 Score=104.88 Aligned_cols=161 Identities=20% Similarity=0.202 Sum_probs=101.9
Q ss_pred cCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHH
Q 043853 31 RGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACR 107 (222)
Q Consensus 31 ~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~ 107 (222)
.+..+.+..++... .+.+...+.+.+++.+ +++|||+|||+|+.+..++... ..|+++|.++..++.|++
T Consensus 43 ~d~~l~i~~~~~is-----~P~~~a~~l~~L~l~p--g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~ 115 (209)
T PF01135_consen 43 EDRPLPIGCGQTIS-----APSMVARMLEALDLKP--GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARR 115 (209)
T ss_dssp SSS-EEEETTEEE-------HHHHHHHHHHTTC-T--T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHH
T ss_pred CCCCeeecceeech-----HHHHHHHHHHHHhcCC--CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHH
Confidence 34555555554432 2233444555555554 8999999999999999998753 279999999999999999
Q ss_pred HHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccC
Q 043853 108 NAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGV 187 (222)
Q Consensus 108 n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~ 187 (222)
++...+..|++++.+|........ .+||.|+++......... .+..|+++|.+++-... .....+-.+.
T Consensus 116 ~l~~~~~~nv~~~~gdg~~g~~~~----apfD~I~v~~a~~~ip~~---l~~qL~~gGrLV~pi~~-~~~~~l~~~~--- 184 (209)
T PF01135_consen 116 NLARLGIDNVEVVVGDGSEGWPEE----APFDRIIVTAAVPEIPEA---LLEQLKPGGRLVAPIGQ-GGSQRLVRIT--- 184 (209)
T ss_dssp HHHHHTTHSEEEEES-GGGTTGGG-----SEEEEEESSBBSS--HH---HHHTEEEEEEEEEEESS-SSSEEEEEEE---
T ss_pred HHHHhccCceeEEEcchhhccccC----CCcCEEEEeeccchHHHH---HHHhcCCCcEEEEEEcc-CCceEEEEEE---
Confidence 999999999999999987765432 479999998754444333 44446888888766554 1111111111
Q ss_pred CCCccCCCeEEeEeeeeccCCCCC
Q 043853 188 GDQNIKGCYKLKSLQPVDMFPHTP 211 (222)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~p~~~ 211 (222)
+.-++.|+.....++.+.|...
T Consensus 185 --k~~~g~~~~~~~~~~~fvpl~~ 206 (209)
T PF01135_consen 185 --KKGDGEFSREELFPVRFVPLVG 206 (209)
T ss_dssp --EETTTEEEEEEEEEE---B-BS
T ss_pred --EeCCCcEEEEEEeeEEEEeccC
Confidence 1113567778888888777654
No 85
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.42 E-value=2e-11 Score=101.66 Aligned_cols=101 Identities=20% Similarity=0.262 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcC-CCcEEEEeCchhchhh
Q 043853 51 EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNN-ISNATFVQGDLNKIGG 129 (222)
Q Consensus 51 ~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~-~~~v~~~~~d~~~~~~ 129 (222)
+.+.+.+.+.+... ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.+++++...+ .++++++++|+.+...
T Consensus 22 ~~i~~~Iv~~~~~~--~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIK--PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHHhcCCC--CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 34445555555433 47899999999999999999888899999999999999999998776 4569999999987643
Q ss_pred hcCCCCCCCcEEEECCCCCCccHHHHHHHH
Q 043853 130 DFGNAFPKPDIVISDPNRPGMHMKLIKFLL 159 (222)
Q Consensus 130 ~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~ 159 (222)
..||.|++|+|+....+-+...+.
T Consensus 100 ------~~~d~VvaNlPY~Istpil~~ll~ 123 (294)
T PTZ00338 100 ------PYFDVCVANVPYQISSPLVFKLLA 123 (294)
T ss_pred ------cccCEEEecCCcccCcHHHHHHHh
Confidence 368999999998766555555553
No 86
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=6.1e-12 Score=110.46 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=69.7
Q ss_pred CCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
.++.+|||+|||+|+.++.+++.. .+++++|+++.+++.+++|++.+|+++++++++|+.+.........+.||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 347899999999999999888752 48999999999999999999999998899999999876522111124799999
Q ss_pred ECCCCCC
Q 043853 143 SDPNRPG 149 (222)
Q Consensus 143 ~~pp~~~ 149 (222)
+|+|+++
T Consensus 331 ~DaPCSg 337 (434)
T PRK14901 331 LDAPCSG 337 (434)
T ss_pred EeCCCCc
Confidence 9999654
No 87
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.42 E-value=7.4e-12 Score=110.31 Aligned_cols=80 Identities=23% Similarity=0.261 Sum_probs=68.8
Q ss_pred CCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
++.+|||+|||+|+.++.+++. ..+++|+|+++.+++.+++|++.+|+++++++++|+.+....+. +.||.|++
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~---~~fD~Vl~ 326 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA---EKFDKILV 326 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc---ccCCEEEE
Confidence 4789999999999999988874 35999999999999999999999999889999999987643322 47999999
Q ss_pred CCCCCC
Q 043853 144 DPNRPG 149 (222)
Q Consensus 144 ~pp~~~ 149 (222)
|||+.+
T Consensus 327 D~Pcsg 332 (444)
T PRK14902 327 DAPCSG 332 (444)
T ss_pred cCCCCC
Confidence 999654
No 88
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.42 E-value=2.1e-12 Score=102.11 Aligned_cols=104 Identities=19% Similarity=0.173 Sum_probs=84.0
Q ss_pred CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCC--CCCCcEE
Q 043853 68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNA--FPKPDIV 141 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~--~~~fD~i 141 (222)
.++|||+||++|+-++++|+. ..+++++|.+++..+.|+++++..|+.+ ++++.+|+.+....+... .++||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 679999999999999999975 3599999999999999999999999864 999999999887655322 2479999
Q ss_pred EECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853 142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVSC 171 (222)
Q Consensus 142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~~ 171 (222)
|+|-.+..+...+...+..++++|+++++-
T Consensus 126 FiDa~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 126 FIDADKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEESTGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEcccccchhhHHHHHhhhccCCeEEEEcc
Confidence 999987666555555556688988887554
No 89
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.41 E-value=3.6e-12 Score=106.16 Aligned_cols=96 Identities=21% Similarity=0.141 Sum_probs=75.2
Q ss_pred CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR 147 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~ 147 (222)
+.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.++++++.+++ ++++...|+.+... .+.||+|++....
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~-----~~~fD~I~~~~vl 194 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI-----QEEYDFILSTVVL 194 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc-----cCCccEEEEcchh
Confidence 45999999999999999998888999999999999999999998888 68999988876432 2479999987531
Q ss_pred C----CccHHHHHHHH-hCCCCcEEEE
Q 043853 148 P----GMHMKLIKFLL-KLKAPRIVYV 169 (222)
Q Consensus 148 ~----~~~~~~~~~l~-~l~~~~~v~~ 169 (222)
. .....+++.+. .++|+|.+++
T Consensus 195 ~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 195 MFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 1 12234455443 3789998554
No 90
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=4.1e-12 Score=103.60 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=76.4
Q ss_pred CCCeEEEEecccchhHHHHhhc----CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW----VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~----~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
++.+|||+|||+|..+..+++. ..+++|+|.|+.|++.|++++..++.. +++++++|+.+.+. ..+|+|
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~------~~~D~v 129 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI------ENASMV 129 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC------CCCCEE
Confidence 5789999999999999888762 359999999999999999999887765 59999999987643 258999
Q ss_pred EECCCCC----CccHHHHHHH-HhCCCCcEEEEee
Q 043853 142 ISDPNRP----GMHMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 142 i~~pp~~----~~~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
+++.... .....+++.+ +.++|+|.++++.
T Consensus 130 v~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 130 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred ehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 8875311 1123444544 4489999988765
No 91
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=5.1e-12 Score=111.28 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=68.1
Q ss_pred CCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
.++.+|||+|||+|+.++.+++. ..+++|+|+|+.+++.+++|++..|+++++++++|+.++.. ...||.|+
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~-----~~~fD~Vl 323 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP-----EEQPDAIL 323 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc-----CCCCCEEE
Confidence 34789999999999999888763 34899999999999999999999999889999999987642 24799999
Q ss_pred ECCCCCC
Q 043853 143 SDPNRPG 149 (222)
Q Consensus 143 ~~pp~~~ 149 (222)
+|||+.+
T Consensus 324 ~D~Pcsg 330 (445)
T PRK14904 324 LDAPCTG 330 (445)
T ss_pred EcCCCCC
Confidence 9999654
No 92
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.40 E-value=1e-11 Score=108.76 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=68.9
Q ss_pred CCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
.++.+|||+|||+|+.++.++.. ..+|+++|+++.+++.+++|++..|++++++.++|+.++.... .+.||.|+
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~---~~~fD~Vl 312 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV---QDTFDRIL 312 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh---hccCCEEE
Confidence 35789999999999999988874 3599999999999999999999999988999999998764221 14799999
Q ss_pred ECCCCCC
Q 043853 143 SDPNRPG 149 (222)
Q Consensus 143 ~~pp~~~ 149 (222)
+|+|..+
T Consensus 313 ~DaPCsg 319 (431)
T PRK14903 313 VDAPCTS 319 (431)
T ss_pred ECCCCCC
Confidence 9999643
No 93
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.38 E-value=1.5e-11 Score=101.04 Aligned_cols=100 Identities=22% Similarity=0.264 Sum_probs=73.9
Q ss_pred CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHH---cCCCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKL---NNISNATFVQGDLNKIGGDFGNAFPKPDI 140 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~---~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 140 (222)
++.+|||+|||+|.++..+++.. .+++|+|+|+.|++.|+++... ...++++++++|+.+++.. .+.||+
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~----~~sfD~ 148 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD----DCYFDA 148 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC----CCCEeE
Confidence 47899999999999999888752 3899999999999999887642 2344699999999887542 347999
Q ss_pred EEECCC---CCCccHHHHHH-HHhCCCCcEEEEee
Q 043853 141 VISDPN---RPGMHMKLIKF-LLKLKAPRIVYVSC 171 (222)
Q Consensus 141 ii~~pp---~~~~~~~~~~~-l~~l~~~~~v~~~~ 171 (222)
|+++-. ..+. ..++.. .+.++|+|.+++..
T Consensus 149 V~~~~~l~~~~d~-~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 149 ITMGYGLRNVVDR-LKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEEecccccCCCH-HHHHHHHHHHcCcCcEEEEEE
Confidence 988642 1222 344444 45589999876553
No 94
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.38 E-value=8.1e-12 Score=103.02 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=76.0
Q ss_pred HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcC
Q 043853 55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFG 132 (222)
Q Consensus 55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~ 132 (222)
+.+.+.+.+. ++++|||+|||.|++++.+|+. +.+|+|+.+|++..+.+++.++..|+++ +++..+|..++..
T Consensus 52 ~~~~~~~~l~--~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--- 126 (273)
T PF02353_consen 52 DLLCEKLGLK--PGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--- 126 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred HHHHHHhCCC--CCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---
Confidence 3444444444 4899999999999999999987 7799999999999999999999999976 9999999987643
Q ss_pred CCCCCCcEEEECCC-----CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853 133 NAFPKPDIVISDPN-----RPGMHMKLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 133 ~~~~~fD~ii~~pp-----~~~~~~~~~~~l~~-l~~~~~v~~~~ 171 (222)
+||.|++--- ... .+.+.+.+.+ |+|+|.+++.+
T Consensus 127 ----~fD~IvSi~~~Ehvg~~~-~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 127 ----KFDRIVSIEMFEHVGRKN-YPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp ----S-SEEEEESEGGGTCGGG-HHHHHHHHHHHSETTEEEEEEE
T ss_pred ----CCCEEEEEechhhcChhH-HHHHHHHHHHhcCCCcEEEEEe
Confidence 7999988632 122 3455666544 89999998665
No 95
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.37 E-value=6.1e-12 Score=97.96 Aligned_cols=98 Identities=21% Similarity=0.217 Sum_probs=75.6
Q ss_pred CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC-
Q 043853 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN- 146 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp- 146 (222)
..++||+|||.|..++.||+.+..|+|+|+|+.+++.+++.++..+++ ++..+.|+.+.... ..||+|++.-.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~~~-----~~yD~I~st~v~ 104 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFDFP-----EEYDFIVSTVVF 104 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS-T-----TTEEEEEEESSG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhcccc-----CCcCEEEEEEEe
Confidence 579999999999999999999999999999999999999999988886 99999999876542 47999987421
Q ss_pred ---CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853 147 ---RPGMHMKLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 147 ---~~~~~~~~~~~l~~-l~~~~~v~~~~ 171 (222)
.+...+.+++.+.. ++|||+..+.+
T Consensus 105 ~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 105 MFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 23345667777755 68998866533
No 96
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.37 E-value=2.6e-11 Score=106.31 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=67.3
Q ss_pred CCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
.++.+|||+|||+|+.++.+++.. ..++|+|+++.+++.+++|++.+|+. ++++++|+.+..... +...||.|++
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~--~~~~fD~Vl~ 319 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWW--DGQPFDRILL 319 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhc--ccCCCCEEEE
Confidence 357899999999999999888764 48999999999999999999999885 789999997653211 1247999999
Q ss_pred CCCCCC
Q 043853 144 DPNRPG 149 (222)
Q Consensus 144 ~pp~~~ 149 (222)
|||..+
T Consensus 320 D~Pcs~ 325 (427)
T PRK10901 320 DAPCSA 325 (427)
T ss_pred CCCCCc
Confidence 999543
No 97
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.35 E-value=1.8e-11 Score=99.88 Aligned_cols=97 Identities=18% Similarity=0.198 Sum_probs=74.1
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
+..+|||+|||+|.++..+++.+.+++++|+|+.+++.|+++.. ...++++|+.+++. ..+.||+|+++.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~----~~~~fD~V~s~~~ 112 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPL----ATATFDLAWSNLA 112 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcC----CCCcEEEEEECch
Confidence 36789999999999999888877899999999999999998743 24678899877643 2247999999875
Q ss_pred C--CCccHHHHHHH-HhCCCCcEEEEeeC
Q 043853 147 R--PGMHMKLIKFL-LKLKAPRIVYVSCN 172 (222)
Q Consensus 147 ~--~~~~~~~~~~l-~~l~~~~~v~~~~~ 172 (222)
. ..-...++..+ +.++|+|.+++++-
T Consensus 113 l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 113 VQWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred hhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2 11223444444 45899999988763
No 98
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.34 E-value=8.2e-11 Score=94.25 Aligned_cols=130 Identities=20% Similarity=0.158 Sum_probs=91.7
Q ss_pred CCccccCCHHHHHHHHHHHHHHhcCC--CCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCc
Q 043853 39 ANSFFQTNTHQAEVLYKLIEDCAGLR--DDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN 116 (222)
Q Consensus 39 ~~~f~~~~~~~~~~~~~~i~~~~~~~--~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~ 116 (222)
++..+.+.........+++.+.+... ...+.+|||+|||+|.++..+++.+.+++++|.++.+++.+++++...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~ 94 (224)
T TIGR01983 15 PNGKFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLK 94 (224)
T ss_pred CCCcHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 34444433444444556676665421 1236799999999999999888877789999999999999999998877756
Q ss_pred EEEEeCchhchhhhcCCCCCCCcEEEECCC--CCCccHHHHHHHH-hCCCCcEEEEee
Q 043853 117 ATFVQGDLNKIGGDFGNAFPKPDIVISDPN--RPGMHMKLIKFLL-KLKAPRIVYVSC 171 (222)
Q Consensus 117 v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp--~~~~~~~~~~~l~-~l~~~~~v~~~~ 171 (222)
+++..+|+.++.... .+.||+|+++.. ...-...+++.+. .++++|.++++.
T Consensus 95 ~~~~~~d~~~~~~~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 95 IEYRCTSVEDLAEKG---AKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred eEEEeCCHHHhhcCC---CCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 899999998775432 247999988642 1112234555543 378888887765
No 99
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.34 E-value=2.1e-11 Score=100.00 Aligned_cols=90 Identities=22% Similarity=0.240 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh
Q 043853 51 EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD 130 (222)
Q Consensus 51 ~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 130 (222)
..+.+.+.+.+... ++++|||+|||+|.++..+++.+.+++|+|+|+.+++.+++++.. .++++++++|+.++..
T Consensus 15 ~~~~~~iv~~~~~~--~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~- 89 (258)
T PRK14896 15 DRVVDRIVEYAEDT--DGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL- 89 (258)
T ss_pred HHHHHHHHHhcCCC--CcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc-
Confidence 33444555554433 378999999999999999998888999999999999999998854 4579999999987653
Q ss_pred cCCCCCCCcEEEECCCCCCc
Q 043853 131 FGNAFPKPDIVISDPNRPGM 150 (222)
Q Consensus 131 ~~~~~~~fD~ii~~pp~~~~ 150 (222)
..||.|++|+|+...
T Consensus 90 -----~~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 90 -----PEFNKVVSNLPYQIS 104 (258)
T ss_pred -----hhceEEEEcCCcccC
Confidence 258999999997643
No 100
>PHA03412 putative methyltransferase; Provisional
Probab=99.34 E-value=1.2e-11 Score=98.71 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=58.3
Q ss_pred CCeEEEEecccchhHHHHhhc-----CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 68 SEIVLDLFCGTGTIGLTLARW-----VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~-----~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
+.+|||+|||+|.+++.+++. ..+++++|+++.+++.|++|.. ++.++++|+..... ..+||+||
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~~-----~~~FDlII 119 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTEF-----DTLFDMAI 119 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhcccc-----cCCccEEE
Confidence 569999999999999988763 3489999999999999998853 57899999976432 14799999
Q ss_pred ECCC
Q 043853 143 SDPN 146 (222)
Q Consensus 143 ~~pp 146 (222)
+|||
T Consensus 120 sNPP 123 (241)
T PHA03412 120 SNPP 123 (241)
T ss_pred ECCC
Confidence 9999
No 101
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.34 E-value=3.4e-11 Score=97.64 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=75.2
Q ss_pred CCCeEEEEecccchhHHHHhhc----CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW----VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~----~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
++.+|||+|||+|..+..+++. ..+++|+|+|+.|++.|+++++..+.. +++++++|+.+... +.+|+|
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~d~v 126 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI------KNASMV 126 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC------CCCCEE
Confidence 4679999999999999988864 348999999999999999999876543 59999999987653 258888
Q ss_pred EECCCCCCc----cHHHHHHH-HhCCCCcEEEEee
Q 043853 142 ISDPNRPGM----HMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 142 i~~pp~~~~----~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
+++-...-+ ...+++.+ +.++|+|.++++.
T Consensus 127 ~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 127 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred eeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 776431111 13344444 4489999998775
No 102
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.33 E-value=1.1e-10 Score=96.52 Aligned_cols=96 Identities=22% Similarity=0.180 Sum_probs=72.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853 54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN 133 (222)
Q Consensus 54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~ 133 (222)
.+.+.+.+... ++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.+++++.. ++++++++|+.++...-
T Consensus 31 ~~~i~~~l~~~--~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~-- 103 (272)
T PRK00274 31 LDKIVDAAGPQ--PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE-- 103 (272)
T ss_pred HHHHHHhcCCC--CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH--
Confidence 33444444333 467999999999999999998888999999999999999988742 56999999998875420
Q ss_pred CCCCCcEEEECCCCCCccHHHHHHHH
Q 043853 134 AFPKPDIVISDPNRPGMHMKLIKFLL 159 (222)
Q Consensus 134 ~~~~fD~ii~~pp~~~~~~~~~~~l~ 159 (222)
-.++.|++|||+.-. ..++..+.
T Consensus 104 --~~~~~vv~NlPY~is-s~ii~~~l 126 (272)
T PRK00274 104 --LQPLKVVANLPYNIT-TPLLFHLL 126 (272)
T ss_pred --cCcceEEEeCCccch-HHHHHHHH
Confidence 015899999996543 44444443
No 103
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.33 E-value=3.4e-11 Score=101.33 Aligned_cols=107 Identities=25% Similarity=0.216 Sum_probs=80.4
Q ss_pred HHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcC
Q 043853 56 LIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFG 132 (222)
Q Consensus 56 ~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~---~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 132 (222)
.+.+.++.. ++.+|||+|||+|.++..+++... .|+++|+++.+++.|+++++.++.+++.++++|+.+.....
T Consensus 71 ~ll~~L~i~--~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~- 147 (322)
T PRK13943 71 LFMEWVGLD--KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF- 147 (322)
T ss_pred HHHHhcCCC--CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc-
Confidence 344444333 478999999999999999987543 69999999999999999999999988999999987654321
Q ss_pred CCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853 133 NAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC 171 (222)
Q Consensus 133 ~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~ 171 (222)
..||+|+++...... ....++.++++|.+++..
T Consensus 148 ---~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 148 ---APYDVIFVTVGVDEV---PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ---CCccEEEECCchHHh---HHHHHHhcCCCCEEEEEe
Confidence 369999997532222 122345678899877654
No 104
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.33 E-value=1.5e-11 Score=100.74 Aligned_cols=93 Identities=23% Similarity=0.294 Sum_probs=70.9
Q ss_pred CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
++.+|||+|||+|.++..+++. ..+++|+|+|+.|++.|+++ +++++++|+.++.. .+.||+|+++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-----~~~fD~v~~~ 96 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP-----KPDTDVVVSN 96 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC-----CCCceEEEEe
Confidence 4689999999999999999876 45999999999999999763 47899999976532 2479999998
Q ss_pred CCC--CCccHHHHHH-HHhCCCCcEEEEee
Q 043853 145 PNR--PGMHMKLIKF-LLKLKAPRIVYVSC 171 (222)
Q Consensus 145 pp~--~~~~~~~~~~-l~~l~~~~~v~~~~ 171 (222)
... -.-...++.. .+.++|+|.+++..
T Consensus 97 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 97 AALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 741 1112344444 44589999988764
No 105
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.33 E-value=5.5e-11 Score=95.98 Aligned_cols=129 Identities=19% Similarity=0.193 Sum_probs=96.8
Q ss_pred cCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcE
Q 043853 38 SANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNA 117 (222)
Q Consensus 38 ~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v 117 (222)
++.++.+.+..+....++++...+... ++.+|||+|||+|.++..+++.+.+++++|.++.+++.+++++...+. ++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~ 97 (233)
T PRK05134 21 DPNGEFKPLHRINPLRLNYIREHAGGL--FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL-KI 97 (233)
T ss_pred ccCCCcHHHHHhhHHHHHHHHHhccCC--CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC-ce
Confidence 567778777777777778777776433 478999999999999998888778999999999999999999887766 47
Q ss_pred EEEeCchhchhhhcCCCCCCCcEEEECCC--CCCccHHHHHHHH-hCCCCcEEEEeeC
Q 043853 118 TFVQGDLNKIGGDFGNAFPKPDIVISDPN--RPGMHMKLIKFLL-KLKAPRIVYVSCN 172 (222)
Q Consensus 118 ~~~~~d~~~~~~~~~~~~~~fD~ii~~pp--~~~~~~~~~~~l~-~l~~~~~v~~~~~ 172 (222)
++...|+.+..... .+.||+|++... ...-...+++.+. .++++|.++++..
T Consensus 98 ~~~~~~~~~~~~~~---~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 98 DYRQTTAEELAAEH---PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EEEecCHHHhhhhc---CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 88888887765321 248999988642 1112234445443 3789998887653
No 106
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.32 E-value=5.1e-11 Score=100.06 Aligned_cols=103 Identities=25% Similarity=0.246 Sum_probs=75.6
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNN-----ISNATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
++.+|||+|||+|.+++.+++.+.+|+|+|+|+.|++.|+++++..+ ..++++..+|+.++. +.||+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~-------~~fD~V 216 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLS-------GKYDTV 216 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcC-------CCcCEE
Confidence 36799999999999999999888899999999999999999987652 235788889976531 479998
Q ss_pred EECC-----CCCCccHHHHHHHHhCCCCcEEEEeeCccchHh
Q 043853 142 ISDP-----NRPGMHMKLIKFLLKLKAPRIVYVSCNPATCAR 178 (222)
Q Consensus 142 i~~p-----p~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~ 178 (222)
++.- |... ...++..+..+.+++ +++++.+.+...
T Consensus 217 v~~~vL~H~p~~~-~~~ll~~l~~l~~g~-liIs~~p~~~~~ 256 (315)
T PLN02585 217 TCLDVLIHYPQDK-ADGMIAHLASLAEKR-LIISFAPKTLYY 256 (315)
T ss_pred EEcCEEEecCHHH-HHHHHHHHHhhcCCE-EEEEeCCcchHH
Confidence 7652 3221 234555565555544 566776655443
No 107
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.32 E-value=7.6e-11 Score=93.45 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEe-Cc
Q 043853 49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQ-GD 123 (222)
Q Consensus 49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~-~d 123 (222)
.+-.++.++.... +.++|||+|++.|+-++.+|... .+++++|.+++..+.|++|+++.|+++ ++++. +|
T Consensus 46 e~g~~L~~L~~~~-----~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gd 120 (219)
T COG4122 46 ETGALLRLLARLS-----GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGD 120 (219)
T ss_pred hHHHHHHHHHHhc-----CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCc
Confidence 3444444444442 37899999999999999998754 389999999999999999999999987 88888 59
Q ss_pred hhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853 124 LNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC 171 (222)
Q Consensus 124 ~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~ 171 (222)
+.+..... ..+.||+||+|--+..+...+...+..+++||+++++-
T Consensus 121 al~~l~~~--~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 121 ALDVLSRL--LDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred HHHHHHhc--cCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 88876641 22589999999876555444444455589999887543
No 108
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=5.4e-11 Score=95.15 Aligned_cols=125 Identities=22% Similarity=0.213 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-C--CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchh
Q 043853 50 AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-V--KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLN 125 (222)
Q Consensus 50 ~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~--~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~ 125 (222)
.+.....|...+.+.+ +.+|+|.|+|||.++..+|+. + .++++.|+.++.++.|++|++..++.+ +++..+|+.
T Consensus 79 yPKD~~~I~~~~gi~p--g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~ 156 (256)
T COG2519 79 YPKDAGYIVARLGISP--GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR 156 (256)
T ss_pred cCCCHHHHHHHcCCCC--CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccc
Confidence 3344566666666655 899999999999999999973 2 499999999999999999999999987 999999998
Q ss_pred chhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHh-CCCCcEEEEee-CccchHhhHHHhh
Q 043853 126 KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK-LKAPRIVYVSC-NPATCARDLDYLC 184 (222)
Q Consensus 126 ~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~-l~~~~~v~~~~-~~~~~~~~~~~l~ 184 (222)
+.... +.||.|++|.|.+ .++++.+.. ++|++.+.+-+ +..+..+....+.
T Consensus 157 ~~~~~-----~~vDav~LDmp~P---W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~ 209 (256)
T COG2519 157 EGIDE-----EDVDAVFLDLPDP---WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALR 209 (256)
T ss_pred ccccc-----cccCEEEEcCCCh---HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH
Confidence 87653 3799999999854 355555544 68887765444 4445555555554
No 109
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.31 E-value=2.8e-11 Score=95.12 Aligned_cols=117 Identities=19% Similarity=0.290 Sum_probs=92.8
Q ss_pred CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
+...+||||||.|.+.+.+|+..+ .++|+|++...+..|.+.+...+++|+.++++|+..+...+..+ +.+|.|+++
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~-~~v~~i~i~ 95 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPP-GSVDRIYIN 95 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTT-TSEEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccC-CchheEEEe
Confidence 355999999999999999998755 99999999999999999999999999999999998876655432 478888776
Q ss_pred CC----------CCCccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhh
Q 043853 145 PN----------RPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLC 184 (222)
Q Consensus 145 pp----------~~~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~ 184 (222)
-| ++-..+.+++.+.. |+++|.+++.++....+.......
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~ 146 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQF 146 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 54 34567888888766 899999999999888887765444
No 110
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1e-11 Score=90.74 Aligned_cols=110 Identities=22% Similarity=0.327 Sum_probs=86.2
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe
Q 043853 43 FQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQ 121 (222)
Q Consensus 43 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~ 121 (222)
|++.++.+.-+...+.+...- -++++++|+|||.|-++++.+.. ...++|+|++|++++.+++|+....++ +++.+
T Consensus 26 Y~T~p~iAasM~~~Ih~Tygd--iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLq 102 (185)
T KOG3420|consen 26 YPTRPHIAASMLYTIHNTYGD--IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQ 102 (185)
T ss_pred CCCcHHHHHHHHHHHHhhhcc--ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh-hheee
Confidence 456677888777877776531 24799999999999999877764 458999999999999999999998884 79999
Q ss_pred CchhchhhhcCCCCCCCcEEEECCC----CCCccHHHHHHHH
Q 043853 122 GDLNKIGGDFGNAFPKPDIVISDPN----RPGMHMKLIKFLL 159 (222)
Q Consensus 122 ~d~~~~~~~~~~~~~~fD~ii~~pp----~~~~~~~~~~~l~ 159 (222)
+|+.+.... ...||.++.||| ..+...++++...
T Consensus 103 cdildle~~----~g~fDtaviNppFGTk~~~aDm~fv~~al 140 (185)
T KOG3420|consen 103 CDILDLELK----GGIFDTAVINPPFGTKKKGADMEFVSAAL 140 (185)
T ss_pred eeccchhcc----CCeEeeEEecCCCCcccccccHHHHHHHH
Confidence 999887553 258999999999 2344455555443
No 111
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.31 E-value=1e-10 Score=93.54 Aligned_cols=71 Identities=28% Similarity=0.349 Sum_probs=62.2
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
++.+|||+|||+|.++..++....+++|+|+|+.+++.|++++...+.. ++++.++|+.+.. +.||+|++.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~fD~ii~~ 126 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-------GEFDIVVCM 126 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-------CCcCEEEEh
Confidence 4789999999999999999887789999999999999999999887763 5999999997754 379999874
No 112
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.31 E-value=4.2e-11 Score=98.15 Aligned_cols=95 Identities=20% Similarity=0.308 Sum_probs=73.3
Q ss_pred CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
++.+|||+|||+|.++..+++. ..+++|+|+|+.+++.|+++. ++++++.+|+.++.. .+.||+|+++
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~-----~~~fD~v~~~ 100 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQP-----PQALDLIFAN 100 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCC-----CCCccEEEEc
Confidence 4789999999999999988875 359999999999999999874 468899999976542 1479999998
Q ss_pred CCC--CCccHHHHHHH-HhCCCCcEEEEee
Q 043853 145 PNR--PGMHMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 145 pp~--~~~~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
... ..-...++..+ +.++++|.+.+..
T Consensus 101 ~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 101 ASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 752 21223444444 4489999988765
No 113
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=6.9e-11 Score=96.78 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=85.1
Q ss_pred HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcC
Q 043853 55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFG 132 (222)
Q Consensus 55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~ 132 (222)
+.+.+.+.+.+ ++++||+|||-|.+++.+|+. +.+|+|+++|+++.+.+++.++..|++ +++++..|..++..
T Consensus 62 ~~~~~kl~L~~--G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e--- 136 (283)
T COG2230 62 DLILEKLGLKP--GMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE--- 136 (283)
T ss_pred HHHHHhcCCCC--CCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc---
Confidence 44445555554 999999999999999999987 579999999999999999999999998 69999999988764
Q ss_pred CCCCCCcEEEECCC-----CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853 133 NAFPKPDIVISDPN-----RPGMHMKLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 133 ~~~~~fD~ii~~pp-----~~~~~~~~~~~l~~-l~~~~~v~~~~ 171 (222)
+||-|++--- ... .+.+.+.+.. |+++|.+.+.+
T Consensus 137 ----~fDrIvSvgmfEhvg~~~-~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 137 ----PFDRIVSVGMFEHVGKEN-YDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred ----ccceeeehhhHHHhCccc-HHHHHHHHHhhcCCCceEEEEE
Confidence 5999988542 112 3455555544 78888877665
No 114
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.30 E-value=2.6e-11 Score=102.67 Aligned_cols=95 Identities=29% Similarity=0.421 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC------------------------------------
Q 043853 47 THQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK------------------------------------ 90 (222)
Q Consensus 47 ~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~------------------------------------ 90 (222)
.++.+.+...+..+..-.+ ++.++|..||+|++.+..|..+.
T Consensus 173 ApLketLAaAil~lagw~~--~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~ 250 (381)
T COG0116 173 APLKETLAAAILLLAGWKP--DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARR 250 (381)
T ss_pred CCchHHHHHHHHHHcCCCC--CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhh
Confidence 3577888777777765443 57999999999999998776543
Q ss_pred -----eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853 91 -----HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNR 147 (222)
Q Consensus 91 -----~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~ 147 (222)
.++|+|+|+.+++.|+.|++..|+.+ ++|.++|+..+.... ..+|++|+|||+
T Consensus 251 ~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~----~~~gvvI~NPPY 309 (381)
T COG0116 251 GKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL----EEYGVVISNPPY 309 (381)
T ss_pred cCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC----CcCCEEEeCCCc
Confidence 37799999999999999999999987 999999999887643 479999999993
No 115
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.30 E-value=4.3e-11 Score=98.85 Aligned_cols=101 Identities=26% Similarity=0.267 Sum_probs=77.4
Q ss_pred CCCeEEEEecccchhHHHHhhc-C--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW-V--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~-~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
++.+|||+|||+|..++.+++. + .+++|+|+++.+++.|+++....+.+++++..+|+.+++. +.+.||+|++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~----~~~~fD~Vi~ 152 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV----ADNSVDVIIS 152 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC----CCCceeEEEE
Confidence 5789999999999988766653 2 3799999999999999999999888889999999977643 1247999998
Q ss_pred CCC---CCCccHHHHHHHHhCCCCcEEEEee
Q 043853 144 DPN---RPGMHMKLIKFLLKLKAPRIVYVSC 171 (222)
Q Consensus 144 ~pp---~~~~~~~~~~~l~~l~~~~~v~~~~ 171 (222)
+.. ..+...-+.+..+.++|+|.++++.
T Consensus 153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 153 NCVINLSPDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred cCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 753 1122233334445589999988753
No 116
>PTZ00146 fibrillarin; Provisional
Probab=99.29 E-value=2.3e-10 Score=94.34 Aligned_cols=143 Identities=20% Similarity=0.147 Sum_probs=90.4
Q ss_pred CCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
.++.+|||+|||+|+++..+++.. ..|+++|+++.+.+...+.++.. +|+.++.+|+.... .+....+.||+|+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~-~y~~~~~~vDvV~ 207 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQ-KYRMLVPMVDVIF 207 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChh-hhhcccCCCCEEE
Confidence 457899999999999999999864 48999999998765555544322 46889999986431 1111123699999
Q ss_pred ECCCCCCccHHHHHHH-HhCCCCcEEEEeeCc----------cchHhhHHHhhccCCCCccCCCeEEeEeeeeccCC-CC
Q 043853 143 SDPNRPGMHMKLIKFL-LKLKAPRIVYVSCNP----------ATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFP-HT 210 (222)
Q Consensus 143 ~~pp~~~~~~~~~~~l-~~l~~~~~v~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p-~~ 210 (222)
+|....+-...+...+ ..|++++.+++.... ..+..+++.|. +.+|+..+.. ++-| +.
T Consensus 208 ~Dva~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~--------~~GF~~~e~v--~L~Py~~ 277 (293)
T PTZ00146 208 ADVAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLK--------KEGLKPKEQL--TLEPFER 277 (293)
T ss_pred EeCCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHH--------HcCCceEEEE--ecCCccC
Confidence 9975332222333333 348999998875521 11233344553 5577766543 4444 44
Q ss_pred CceeEEEEEEe
Q 043853 211 PHIECVCLLEL 221 (222)
Q Consensus 211 ~~~~~v~~~~~ 221 (222)
.|.-.|..+.+
T Consensus 278 ~h~~v~~~~~~ 288 (293)
T PTZ00146 278 DHAVVIGVYRP 288 (293)
T ss_pred CcEEEEEEEcC
Confidence 56666666543
No 117
>PRK04457 spermidine synthase; Provisional
Probab=99.29 E-value=1.4e-10 Score=95.28 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=83.7
Q ss_pred CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
+..+|||+|||+|.++..+++.. .+++++|+||.+++.|++++...+. ++++++.+|+.++..... .+||+|++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~---~~yD~I~~ 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR---HSTDVILV 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC---CCCCEEEE
Confidence 35789999999999999887754 4899999999999999999876543 469999999988765432 47999999
Q ss_pred CCCCC-C-----ccHHHHHHHHh-CCCCcEEEEeeC--ccchHhhHHHhh
Q 043853 144 DPNRP-G-----MHMKLIKFLLK-LKAPRIVYVSCN--PATCARDLDYLC 184 (222)
Q Consensus 144 ~pp~~-~-----~~~~~~~~l~~-l~~~~~v~~~~~--~~~~~~~~~~l~ 184 (222)
|.... . ...++.+.+.. ++|+|++.+... .......++.+.
T Consensus 143 D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~ 192 (262)
T PRK04457 143 DGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLE 192 (262)
T ss_pred eCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHH
Confidence 85321 1 22566666544 899999887432 222333445554
No 118
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.28 E-value=1.3e-10 Score=94.32 Aligned_cols=103 Identities=9% Similarity=0.054 Sum_probs=83.8
Q ss_pred CCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCC---CCCCcE
Q 043853 68 SEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNA---FPKPDI 140 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~---~~~fD~ 140 (222)
.++|||+|+++|+-++++|... .+++++|.+++..+.|+++++..|+.+ ++++.+|+.+....+... .++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 6799999999999999998753 499999999999999999999999865 999999999987665321 248999
Q ss_pred EEECCCCCCccHHHHHHHHhCCCCcEEEEe
Q 043853 141 VISDPNRPGMHMKLIKFLLKLKAPRIVYVS 170 (222)
Q Consensus 141 ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~ 170 (222)
||+|-.+..+...+...+..+++||+++++
T Consensus 160 iFiDadK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 160 IFVDADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 999987665544444445668899987754
No 119
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.26 E-value=2.1e-10 Score=100.60 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=64.4
Q ss_pred CCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
.++.+|||+|||+|+.+..+++.. .+++|+|+++.+++.+++|++..|++. +++..+|....... .+...||.|+
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~--~~~~~fD~Vl 314 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW--AENEQFDRIL 314 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc--ccccccCEEE
Confidence 347899999999999999888753 599999999999999999999999862 34466776543321 0124799999
Q ss_pred ECCCCCC
Q 043853 143 SDPNRPG 149 (222)
Q Consensus 143 ~~pp~~~ 149 (222)
+|+|..+
T Consensus 315 lDaPcSg 321 (426)
T TIGR00563 315 LDAPCSA 321 (426)
T ss_pred EcCCCCC
Confidence 9999554
No 120
>KOG2730 consensus Methylase [General function prediction only]
Probab=99.26 E-value=1.4e-11 Score=96.07 Aligned_cols=111 Identities=23% Similarity=0.386 Sum_probs=86.5
Q ss_pred EEEcCCccccCCH-HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcC
Q 043853 35 FQISANSFFQTNT-HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNN 113 (222)
Q Consensus 35 ~~~~~~~f~~~~~-~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~ 113 (222)
..++..+|+.-.+ +.+..+...+.... ....|+|.+||.|+.++.+|..++.|++||+||.-+..|++|++-.|
T Consensus 66 i~md~e~wfsvTpe~ia~~iA~~v~~~~-----~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYG 140 (263)
T KOG2730|consen 66 IYMDREGWFSVTPEKIAEHIANRVVACM-----NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYG 140 (263)
T ss_pred eeecccceEEeccHHHHHHHHHHHHHhc-----CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeec
Confidence 5556666554333 34544444443332 36789999999999999999999999999999999999999999999
Q ss_pred CCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc
Q 043853 114 ISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM 150 (222)
Q Consensus 114 ~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~ 150 (222)
+++ ++|++||+.+....+..+...+|+++..||+.+.
T Consensus 141 I~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp 178 (263)
T KOG2730|consen 141 VPDRITFICGDFLDLASKLKADKIKYDCVFLSPPWGGP 178 (263)
T ss_pred CCceeEEEechHHHHHHHHhhhhheeeeeecCCCCCCc
Confidence 986 9999999998876654444568899999996553
No 121
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.25 E-value=2.2e-10 Score=92.73 Aligned_cols=138 Identities=21% Similarity=0.142 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchh
Q 043853 50 AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLN 125 (222)
Q Consensus 50 ~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~ 125 (222)
....+.+|...+.+.+ +.+|||.|+|+|.++..+++. ..+|+..|.+++.++.|++|++.++++ ++++.+.|+.
T Consensus 25 YpkD~~~I~~~l~i~p--G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 25 YPKDISYILMRLDIRP--GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp -HHHHHHHHHHTT--T--T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred eCchHHHHHHHcCCCC--CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 3444666777776665 999999999999999999974 249999999999999999999999997 5999999996
Q ss_pred chhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhC-CCCcEEE-EeeCccchHhhHHHhhccCCCCccCCCeEEeE
Q 043853 126 KIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKL-KAPRIVY-VSCNPATCARDLDYLCHGVGDQNIKGCYKLKS 200 (222)
Q Consensus 126 ~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l-~~~~~v~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 200 (222)
+-..... ....+|.||+|.|.+. ..+-.....| +++|.+. ++-+-.+..+.+..+. +.||....
T Consensus 103 ~~g~~~~-~~~~~DavfLDlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~--------~~gf~~i~ 168 (247)
T PF08704_consen 103 EEGFDEE-LESDFDAVFLDLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALR--------EHGFTDIE 168 (247)
T ss_dssp CG--STT--TTSEEEEEEESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHH--------HTTEEEEE
T ss_pred ccccccc-ccCcccEEEEeCCCHH--HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHH--------HCCCeeeE
Confidence 4322111 1147999999998553 2223333345 5666654 3445666666777775 45665444
No 122
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.25 E-value=1.7e-11 Score=98.07 Aligned_cols=96 Identities=20% Similarity=0.300 Sum_probs=73.7
Q ss_pred CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC------cEEEEeCchhchhhhcCCCCCCCcEE
Q 043853 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS------NATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~------~v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
+++|||+|||.|.++..||+.+.+|+|+|.++.|++.|++.....-.. ++++.+.|++... +.||.|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-------~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-------GKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-------ccccee
Confidence 578999999999999999999999999999999999999984433221 2567777777654 369999
Q ss_pred EECCC---CCCccHHHHHHHH-hCCCCcEEEEee
Q 043853 142 ISDPN---RPGMHMKLIKFLL-KLKAPRIVYVSC 171 (222)
Q Consensus 142 i~~pp---~~~~~~~~~~~l~-~l~~~~~v~~~~ 171 (222)
++.-- -.. ...+++.+. .++|+|.+++++
T Consensus 163 vcsevleHV~d-p~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 163 VCSEVLEHVKD-PQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eeHHHHHHHhC-HHHHHHHHHHHhCCCCceEeee
Confidence 99642 111 245555544 479999999887
No 123
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.25 E-value=1.8e-10 Score=92.25 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=96.9
Q ss_pred CCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
...+||||||.|.+.+.+|+..+ .++|||+....+..|.+.+...+++|+.+++.|+.++...+..+ +..|-|+++-
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~-~sl~~I~i~F 127 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPD-GSLDKIYINF 127 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCC-CCeeEEEEEC
Confidence 36899999999999999999876 89999999999999999999999989999999999998876643 3677776665
Q ss_pred C----------CCCccHHHHHHHHh-CCCCcEEEEeeCccchHhh-HHHh
Q 043853 146 N----------RPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARD-LDYL 183 (222)
Q Consensus 146 p----------~~~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~-~~~l 183 (222)
| |+-..+.+++.+.. |+++|.+++.++....+.. +...
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~ 177 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEV 177 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHH
Confidence 4 44567888888765 8999999999998887777 4444
No 124
>PLN03075 nicotianamine synthase; Provisional
Probab=99.24 E-value=1.2e-09 Score=90.38 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=93.1
Q ss_pred CCCeEEEEecccchhHH-HHh-hcC--CeEEEEeCCHHHHHHHHHHHHH-cCCCc-EEEEeCchhchhhhcCCCCCCCcE
Q 043853 67 GSEIVLDLFCGTGTIGL-TLA-RWV--KHVYGYEVVPQAISDACRNAKL-NNISN-ATFVQGDLNKIGGDFGNAFPKPDI 140 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~-~la-~~~--~~v~gvD~~~~~i~~a~~n~~~-~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ 140 (222)
+.++|+|+|||.|.++. .++ ... .+++|+|+|+.+++.|+++++. .++.+ ++|..+|+.+.... ...||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~----l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES----LKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc----cCCcCE
Confidence 46899999999876544 444 333 3799999999999999999965 77765 99999999885322 247999
Q ss_pred EEECCC---CCCccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCCCCCceeEE
Q 043853 141 VISDPN---RPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFPHTPHIECV 216 (222)
Q Consensus 141 ii~~pp---~~~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v 216 (222)
|++.-- ...-..++++.+.+ ++|||++++-+.. ...+.++..+....+. ||++.. .+.|....+-.|
T Consensus 199 VF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~----G~r~~LYp~v~~~~~~-gf~~~~----~~~P~~~v~Nsv 269 (296)
T PLN03075 199 VFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAH----GARAFLYPVVDPCDLR-GFEVLS----VFHPTDEVINSV 269 (296)
T ss_pred EEEecccccccccHHHHHHHHHHhcCCCcEEEEeccc----chHhhcCCCCChhhCC-CeEEEE----EECCCCCceeeE
Confidence 999831 12345677777655 8999999877521 1122222222212222 665544 345666666666
Q ss_pred EEEEe
Q 043853 217 CLLEL 221 (222)
Q Consensus 217 ~~~~~ 221 (222)
.++++
T Consensus 270 i~~r~ 274 (296)
T PLN03075 270 IIARK 274 (296)
T ss_pred EEEEe
Confidence 66554
No 125
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.23 E-value=4.3e-10 Score=94.39 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=72.0
Q ss_pred CCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcC-CCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNN-ISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
++++|||+|||+|.++..++..+. .++|+|.|+.++..++...+..+ ..++.+..+++.+++.. ..||+|++.
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-----~~FD~V~s~ 195 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-----YAFDTVFSM 195 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-----CCcCEEEEc
Confidence 478999999999999998877654 79999999999987654333222 23588888998876532 379999987
Q ss_pred CC---CCCccHHHHHHHH-hCCCCcEEEEee
Q 043853 145 PN---RPGMHMKLIKFLL-KLKAPRIVYVSC 171 (222)
Q Consensus 145 pp---~~~~~~~~~~~l~-~l~~~~~v~~~~ 171 (222)
-. +... ..++..+. .++++|.+++++
T Consensus 196 gvL~H~~dp-~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 196 GVLYHRKSP-LEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred chhhccCCH-HHHHHHHHHhcCCCCEEEEEE
Confidence 52 3333 34555554 489999988764
No 126
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.22 E-value=2e-11 Score=84.05 Aligned_cols=91 Identities=23% Similarity=0.289 Sum_probs=67.7
Q ss_pred EEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC--CC
Q 043853 72 LDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN--RP 148 (222)
Q Consensus 72 lDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp--~~ 148 (222)
||+|||+|..+..+++. ..+++++|.++.+++.++++.... ++.+.++|+.+++.. ++.||+|++.-- .-
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~----~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFP----DNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-----TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccc----cccccccccccceeec
Confidence 79999999999999988 779999999999999999987643 356999999888653 358999998753 11
Q ss_pred CccHHHHHHHH-hCCCCcEEEE
Q 043853 149 GMHMKLIKFLL-KLKAPRIVYV 169 (222)
Q Consensus 149 ~~~~~~~~~l~-~l~~~~~v~~ 169 (222)
.-...+++.+. .++|+|.+++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 22344555554 4889998874
No 127
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.22 E-value=1.5e-10 Score=95.16 Aligned_cols=98 Identities=19% Similarity=0.114 Sum_probs=73.1
Q ss_pred CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
++.+|||+|||+|..+..+++. +.+++|+|+|+.+++.|+++... .+++++..+|+.+.+. +.+.||+|++..
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~----~~~~FD~V~s~~ 125 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDF----PENTFDMIYSRD 125 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCC----CCCCeEEEEEhh
Confidence 4789999999999999988764 45999999999999999998754 2359999999876432 224799999853
Q ss_pred C-----CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853 146 N-----RPGMHMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 146 p-----~~~~~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
. ... ...+++.+ +.++|+|.++++.
T Consensus 126 ~l~h~~~~d-~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 126 AILHLSYAD-KKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred hHHhCCHHH-HHHHHHHHHHHcCCCcEEEEEE
Confidence 2 112 23444444 4489999988764
No 128
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.22 E-value=2.1e-10 Score=106.18 Aligned_cols=130 Identities=22% Similarity=0.243 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---------------------------------------
Q 043853 48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--------------------------------------- 88 (222)
Q Consensus 48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--------------------------------------- 88 (222)
++.+.+...+..+..-. .++..++|++||+|++.+..|..
T Consensus 172 pl~etlAaa~l~~a~w~-~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 172 PLKENLAAAILLRSGWP-QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CCcHHHHHHHHHHcCCC-CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 46677777676665432 23689999999999999966542
Q ss_pred -----CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCC---Cc-------cH
Q 043853 89 -----VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP---GM-------HM 152 (222)
Q Consensus 89 -----~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~---~~-------~~ 152 (222)
..+++|+|+++.+++.|++|+..+|+.+ +++.++|+.++..... .+.||+|++|||+. +. ..
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~--~~~~d~IvtNPPYg~r~~~~~~l~~lY~ 328 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP--KGPTGLVISNPPYGERLGEEPALIALYS 328 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc--cCCCCEEEECCCCcCccCchHHHHHHHH
Confidence 1268999999999999999999999976 9999999988754321 13699999999942 21 22
Q ss_pred HHHHHHHhCCCCcEEEEeeCccchHhhH
Q 043853 153 KLIKFLLKLKAPRIVYVSCNPATCARDL 180 (222)
Q Consensus 153 ~~~~~l~~l~~~~~v~~~~~~~~~~~~~ 180 (222)
.+.+.++...++..+++-+....+.+.+
T Consensus 329 ~lg~~lk~~~~g~~~~llt~~~~l~~~~ 356 (702)
T PRK11783 329 QLGRRLKQQFGGWNAALFSSSPELLSCL 356 (702)
T ss_pred HHHHHHHHhCCCCeEEEEeCCHHHHHHh
Confidence 2333444444666666555554444444
No 129
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.21 E-value=4.8e-11 Score=83.86 Aligned_cols=68 Identities=31% Similarity=0.437 Sum_probs=57.4
Q ss_pred EEEEecccchhHHHHhhcC-----CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 71 VLDLFCGTGTIGLTLARWV-----KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 71 vlDlg~G~G~~~~~la~~~-----~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
|||+|||+|..+..+++.. .+++|+|+|+.|++.++++.+..+. +++++++|+.++... .++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~----~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFS----DGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHH----SSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCccc----CCCeeEEEE
Confidence 7999999999999988764 6999999999999999999988766 699999999987643 248999999
No 130
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.21 E-value=4e-10 Score=95.24 Aligned_cols=99 Identities=18% Similarity=0.118 Sum_probs=72.8
Q ss_pred CCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
++.+|||+|||+|.++..++..+. .|+|+|.|+.++..++...+..+. .+++++.+|+.+++. .+.||+|++.
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-----~~~FD~V~s~ 196 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-----LKAFDTVFSM 196 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-----cCCcCEEEEC
Confidence 468999999999999999887654 799999999999876554443332 359999999988754 1479999986
Q ss_pred CC---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853 145 PN---RPGMHMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 145 pp---~~~~~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
-- ..+. ..+++.+ +.++|+|.+++++
T Consensus 197 ~vl~H~~dp-~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 197 GVLYHRRSP-LDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ChhhccCCH-HHHHHHHHHhcCCCcEEEEEE
Confidence 42 2233 3444444 4489999988764
No 131
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.21 E-value=1.8e-10 Score=94.29 Aligned_cols=95 Identities=22% Similarity=0.197 Sum_probs=72.4
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853 54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN 133 (222)
Q Consensus 54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~ 133 (222)
.+.+.+.+... ++.+|||+|||+|.++..+++.+.+++++|+|+.+++.+++++.. .++++++++|+.+.+..
T Consensus 18 ~~~i~~~~~~~--~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~--- 90 (253)
T TIGR00755 18 IQKIVEAANVL--EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP--- 90 (253)
T ss_pred HHHHHHhcCCC--CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh---
Confidence 33344444332 478999999999999999999888999999999999999988743 34699999999887543
Q ss_pred CCCCCc---EEEECCCCCCccHHHHHHHH
Q 043853 134 AFPKPD---IVISDPNRPGMHMKLIKFLL 159 (222)
Q Consensus 134 ~~~~fD---~ii~~pp~~~~~~~~~~~l~ 159 (222)
.+| +|++|+|+... ..++..+.
T Consensus 91 ---~~d~~~~vvsNlPy~i~-~~il~~ll 115 (253)
T TIGR00755 91 ---DFPKQLKVVSNLPYNIS-SPLIFKLL 115 (253)
T ss_pred ---HcCCcceEEEcCChhhH-HHHHHHHh
Confidence 355 99999996543 44454444
No 132
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.20 E-value=6e-11 Score=91.75 Aligned_cols=98 Identities=13% Similarity=0.176 Sum_probs=69.3
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
.-.++||+|||.|.++..||..+..++++|+++.+++.|++.+.. .++|++++.|+.++.+. +.||+|++.--
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~P~-----~~FDLIV~SEV 115 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFWPE-----GRFDLIVLSEV 115 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---S-----S-EEEEEEES-
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCCCC-----CCeeEEEEehH
Confidence 357899999999999999999999999999999999999998863 56899999999776532 58999988753
Q ss_pred --CCC---ccHHHHHHH-HhCCCCcEEEEee
Q 043853 147 --RPG---MHMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 147 --~~~---~~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
+-. ....+++.+ ..+.|+|.+++..
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 111 112333333 3488999888655
No 133
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.2e-09 Score=83.00 Aligned_cols=120 Identities=20% Similarity=0.286 Sum_probs=87.5
Q ss_pred CCeEEEEecccchhHHHHhhc-CC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 68 SEIVLDLFCGTGTIGLTLARW-VK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~-~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
...++|+|||+|..+..++.. ++ ...++|+||++++..++.++.|++ +++.++.|+.+.... ++.|+++.|
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~-----~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRN-----ESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhcc-----CCccEEEEC
Confidence 578999999999999988874 22 678999999999999999999988 489999999887764 589999999
Q ss_pred CCCC-------------------CccHHHHHHHHh-----CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeE
Q 043853 145 PNRP-------------------GMHMKLIKFLLK-----LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKS 200 (222)
Q Consensus 145 pp~~-------------------~~~~~~~~~l~~-----l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 200 (222)
||+. .....+.+.+.. +.|.|++|+-........++-.+.+ +.||....
T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~-------~~g~~~~~ 190 (209)
T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILE-------KKGYGVRI 190 (209)
T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHh-------hcccceeE
Confidence 9821 011233333332 5789999977655444455443333 55665544
No 134
>PRK00811 spermidine synthase; Provisional
Probab=99.19 E-value=7.5e-10 Score=92.01 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=77.0
Q ss_pred CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcC-----CCcEEEEeCchhchhhhcCCCCCCCc
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNN-----ISNATFVQGDLNKIGGDFGNAFPKPD 139 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~-----~~~v~~~~~d~~~~~~~~~~~~~~fD 139 (222)
+.++||++|||.|..+..+++. ..+|+++|+|+.+++.|++++...+ .++++++.+|+.++... ..++||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCccc
Confidence 4679999999999999988765 3589999999999999999986532 34699999999887654 225899
Q ss_pred EEEECCCCC-C-----ccHHHHHHHH-hCCCCcEEEEee
Q 043853 140 IVISDPNRP-G-----MHMKLIKFLL-KLKAPRIVYVSC 171 (222)
Q Consensus 140 ~ii~~pp~~-~-----~~~~~~~~l~-~l~~~~~v~~~~ 171 (222)
+|++|.+.. + ...++.+.++ .|+++|++.+.+
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 999985311 1 1234444443 489999887654
No 135
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.18 E-value=2.5e-10 Score=91.50 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=74.5
Q ss_pred CeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 69 EIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
++|||+|||+|.++..+++.. .+++|+|+|+.+++.+++++...+++. ++++.+|..+.+.. +.||+|++.-
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-----~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-----DTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-----CCCCEeehHH
Confidence 379999999999999888754 489999999999999999999888764 89999998654321 3799998743
Q ss_pred C--CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853 146 N--RPGMHMKLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 146 p--~~~~~~~~~~~l~~-l~~~~~v~~~~ 171 (222)
. ...-...+++.+.. ++|+|.+++..
T Consensus 76 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 76 VIHHIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 1 11113455555544 89999988654
No 136
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.18 E-value=4.3e-10 Score=99.96 Aligned_cols=99 Identities=24% Similarity=0.178 Sum_probs=75.1
Q ss_pred CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
++.+|||+|||+|..++.+++. +.+++|+|+|+.+++.|+++....+ .++++.++|+.+.+. +.+.||+|++..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~----~~~~fD~I~s~~ 340 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTY----PDNSFDVIYSRD 340 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCC----CCCCEEEEEECC
Confidence 4779999999999999988874 5699999999999999999876433 259999999977543 124799999864
Q ss_pred C---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853 146 N---RPGMHMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 146 p---~~~~~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
. ... ...+++.+ +.++|+|.++++.
T Consensus 341 ~l~h~~d-~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 341 TILHIQD-KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred cccccCC-HHHHHHHHHHHcCCCeEEEEEE
Confidence 2 222 24455544 4489999988764
No 137
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.18 E-value=4.1e-10 Score=89.18 Aligned_cols=69 Identities=26% Similarity=0.263 Sum_probs=56.4
Q ss_pred CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
++.+|||+|||+|..+..+++. ..+++|+|+|+.|++.|+++. +++++.++|+.+ +. +.+.||+|+++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~----~~~sfD~V~~~ 112 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PF----KDNFFDLVLTK 112 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CC----CCCCEEEEEEC
Confidence 4678999999999999988875 469999999999999999874 346788888876 22 22589999986
Q ss_pred C
Q 043853 145 P 145 (222)
Q Consensus 145 p 145 (222)
-
T Consensus 113 ~ 113 (204)
T TIGR03587 113 G 113 (204)
T ss_pred C
Confidence 5
No 138
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.18 E-value=1.3e-09 Score=92.21 Aligned_cols=112 Identities=21% Similarity=0.174 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh
Q 043853 51 EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG 128 (222)
Q Consensus 51 ~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~ 128 (222)
+.+.+.+.+..... .++.+|||+|||+|.++..+++. ..+++++|.|+.|++.|+++... .+++++.+|+.+..
T Consensus 98 e~~r~~~l~~~~l~-~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp 173 (340)
T PLN02490 98 EDMRDDALEPADLS-DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLP 173 (340)
T ss_pred HHHHHHHHhhcccC-CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCC
Confidence 33444444443332 24679999999999999988764 35899999999999999998652 35789999998764
Q ss_pred hhcCCCCCCCcEEEECCC---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853 129 GDFGNAFPKPDIVISDPN---RPGMHMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 129 ~~~~~~~~~fD~ii~~pp---~~~~~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
.. .+.||+|+++.. ..+. ..+++.+ +.++++|.+++..
T Consensus 174 ~~----~~sFDvVIs~~~L~~~~d~-~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 174 FP----TDYADRYVSAGSIEYWPDP-QRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred CC----CCceeEEEEcChhhhCCCH-HHHHHHHHHhcCCCcEEEEEE
Confidence 32 247999998753 1222 3444444 4489999876643
No 139
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.18 E-value=6.4e-10 Score=89.53 Aligned_cols=96 Identities=21% Similarity=0.283 Sum_probs=73.1
Q ss_pred CCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
..+|||+|||+|.++..+++..+ +++++|+++.+++.++++.. ++++++.+|+.+.+.. .+.||+|+++.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~----~~~fD~vi~~~ 106 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLE----DSSFDLIVSNL 106 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCC----CCceeEEEEhh
Confidence 46899999999999998887654 68999999999999988764 3688999999876531 24799999975
Q ss_pred C--CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853 146 N--RPGMHMKLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 146 p--~~~~~~~~~~~l~~-l~~~~~v~~~~ 171 (222)
. ...-...+++.+.+ ++++|.++++.
T Consensus 107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 107 ALQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 4 11123455555544 79999988765
No 140
>PHA03411 putative methyltransferase; Provisional
Probab=99.17 E-value=1.2e-10 Score=95.02 Aligned_cols=70 Identities=24% Similarity=0.357 Sum_probs=59.1
Q ss_pred CCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 68 SEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
..+|||+|||+|.+++.++.. ..+++|+|+|+.+++.++++. ++++++++|+.++... .+||+|++||
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~-----~kFDlIIsNP 134 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESN-----EKFDVVISNP 134 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhccc-----CCCcEEEEcC
Confidence 468999999999999988764 359999999999999999874 3688999999876521 4799999999
Q ss_pred CC
Q 043853 146 NR 147 (222)
Q Consensus 146 p~ 147 (222)
|+
T Consensus 135 PF 136 (279)
T PHA03411 135 PF 136 (279)
T ss_pred Cc
Confidence 93
No 141
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.17 E-value=1.3e-09 Score=87.61 Aligned_cols=95 Identities=24% Similarity=0.386 Sum_probs=70.1
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
++.+|||+|||+|.++..+++.+..++|+|+|+.+++.|++++...+. +++++..+|+... .+.||+|++.-
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-------~~~fD~v~~~~ 135 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL-------LGRFDTVVCLD 135 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc-------cCCcCEEEEcc
Confidence 367999999999999999988878999999999999999999988777 3589999994321 14799998753
Q ss_pred CC----CCccHHHHHHHHhCCCCcEEE
Q 043853 146 NR----PGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 146 p~----~~~~~~~~~~l~~l~~~~~v~ 168 (222)
.. ......+++.+..+.+++.++
T Consensus 136 ~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 136 VLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred hhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 21 111234555555544555443
No 142
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.16 E-value=1.9e-10 Score=91.70 Aligned_cols=100 Identities=19% Similarity=0.126 Sum_probs=68.3
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc------------CCCcEEEEeCchhchhhhcCCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN------------NISNATFVQGDLNKIGGDFGNA 134 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~------------~~~~v~~~~~d~~~~~~~~~~~ 134 (222)
++.+|||+|||.|..++.+|+++.+|+|+|+|+.+++.+....... .-.++++.++|+.++.....
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~-- 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL-- 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC--
Confidence 3579999999999999999999999999999999999864322110 11248999999988754221
Q ss_pred CCCCcEEEEC-----CCCCCccHHHHHHHH-hCCCCcEEEEe
Q 043853 135 FPKPDIVISD-----PNRPGMHMKLIKFLL-KLKAPRIVYVS 170 (222)
Q Consensus 135 ~~~fD~ii~~-----pp~~~~~~~~~~~l~-~l~~~~~v~~~ 170 (222)
..||.|+-. .|. .........+. .++|+|.+++.
T Consensus 112 -~~fD~i~D~~~~~~l~~-~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 112 -GPVDAVYDRAALIALPE-EMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred -CCcCEEEechhhccCCH-HHHHHHHHHHHHHcCCCCeEEEE
Confidence 367876532 221 22233444444 37899865444
No 143
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.15 E-value=9.7e-10 Score=90.88 Aligned_cols=94 Identities=19% Similarity=0.194 Sum_probs=69.3
Q ss_pred CCCeEEEEecccchhHHHHhhcC-----CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV-----KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~-----~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
+..+|||+|||+|.++..+++.. ..++|+|+|+.+++.|+++. +++.+..+|+.+++.. .+.||+|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~----~~sfD~I 155 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFA----DQSLDAI 155 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCc----CCceeEE
Confidence 35789999999999999887643 26899999999999998753 4688999998876532 2479999
Q ss_pred EECCCCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853 142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNP 173 (222)
Q Consensus 142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~ 173 (222)
++.... .. ..+..+.++|+|.+++.+..
T Consensus 156 ~~~~~~-~~---~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 156 IRIYAP-CK---AEELARVVKPGGIVITVTPG 183 (272)
T ss_pred EEecCC-CC---HHHHHhhccCCCEEEEEeCC
Confidence 875431 11 12233447899988876644
No 144
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.14 E-value=3e-10 Score=88.59 Aligned_cols=95 Identities=23% Similarity=0.335 Sum_probs=75.2
Q ss_pred CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
...+|.|+|||+|..+-.++++.+ .++|+|.|+.|++.|+.. +++++|..+|+.++... ...|++++|
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~p~-----~~~dllfaN 99 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWKPE-----QPTDLLFAN 99 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcCCC-----Cccchhhhh
Confidence 367999999999999999998754 999999999999999775 46899999999998653 479999999
Q ss_pred CC--CCCccH-HHHHHHHhCCCCcEEEEee
Q 043853 145 PN--RPGMHM-KLIKFLLKLKAPRIVYVSC 171 (222)
Q Consensus 145 pp--~~~~~~-~~~~~l~~l~~~~~v~~~~ 171 (222)
.. +-.-+. -+...+..+.|||++-+.-
T Consensus 100 AvlqWlpdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 100 AVLQWLPDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred hhhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence 64 111123 3344455689999987665
No 145
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.13 E-value=1e-09 Score=75.78 Aligned_cols=98 Identities=29% Similarity=0.356 Sum_probs=74.7
Q ss_pred eEEEEecccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC
Q 043853 70 IVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP 148 (222)
Q Consensus 70 ~vlDlg~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~ 148 (222)
+++|+|||+|.++..+++ ...+++++|.++.+++.+++.....+..++++..+|+.+.... ....||+++++++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE---ADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc---cCCceEEEEEcccee
Confidence 489999999999998887 5569999999999999999765555555699999999887541 124799999998743
Q ss_pred ---CccHHHHHHHH-hCCCCcEEEEe
Q 043853 149 ---GMHMKLIKFLL-KLKAPRIVYVS 170 (222)
Q Consensus 149 ---~~~~~~~~~l~-~l~~~~~v~~~ 170 (222)
.....+++.+. .++++|.++++
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 23345555543 37888888765
No 146
>PRK06922 hypothetical protein; Provisional
Probab=99.13 E-value=5.3e-10 Score=100.74 Aligned_cols=102 Identities=14% Similarity=0.183 Sum_probs=75.3
Q ss_pred CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
++.+|||+|||+|.++..+++.. .+++|+|+|+.|++.|+++....+. +++++++|+.+++..+. .+.||+|+++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fe--deSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFE--KESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccC--CCCEEEEEEc
Confidence 36799999999999998888754 4999999999999999998876554 58899999987642222 2479999988
Q ss_pred CCCCC---------------ccHHHHHH-HHhCCCCcEEEEee
Q 043853 145 PNRPG---------------MHMKLIKF-LLKLKAPRIVYVSC 171 (222)
Q Consensus 145 pp~~~---------------~~~~~~~~-l~~l~~~~~v~~~~ 171 (222)
++... ....++.. .+.++|||.+++..
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 64111 11233333 34589999988764
No 147
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.12 E-value=1.3e-09 Score=94.26 Aligned_cols=105 Identities=18% Similarity=0.147 Sum_probs=75.5
Q ss_pred HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853 55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN 133 (222)
Q Consensus 55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~ 133 (222)
..+.+.+... ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++. +. ++++..+|..+..
T Consensus 157 ~~l~~~l~l~--~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l~----- 226 (383)
T PRK11705 157 DLICRKLQLK--PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDLN----- 226 (383)
T ss_pred HHHHHHhCCC--CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhcC-----
Confidence 3444444433 4789999999999999988875 5699999999999999999885 33 3788888876541
Q ss_pred CCCCCcEEEECCCCC--C--ccHHHHHHH-HhCCCCcEEEEee
Q 043853 134 AFPKPDIVISDPNRP--G--MHMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 134 ~~~~fD~ii~~pp~~--~--~~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
+.||.|++..... + ....+++.+ +.++|+|.+++.+
T Consensus 227 --~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 227 --GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred --CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 4799998865311 1 113444444 3489999988765
No 148
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.12 E-value=6.9e-10 Score=85.69 Aligned_cols=88 Identities=25% Similarity=0.332 Sum_probs=65.8
Q ss_pred CCCCeEEEEecccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 66 DGSEIVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
.++.+|||+|||.|.+...+.+ .....+|+|+++..+..+.++ .+.++++|+.+....+. ++.||+||++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~--d~sFD~VIls 82 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFP--DQSFDYVILS 82 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCC--CCCccEEehH
Confidence 4589999999999999998876 456999999999988877653 46799999988776554 3689999998
Q ss_pred CCCC--CccHHHHHHHHhCC
Q 043853 145 PNRP--GMHMKLIKFLLKLK 162 (222)
Q Consensus 145 pp~~--~~~~~~~~~l~~l~ 162 (222)
-.-. .....+++.+.+..
T Consensus 83 qtLQ~~~~P~~vL~EmlRVg 102 (193)
T PF07021_consen 83 QTLQAVRRPDEVLEEMLRVG 102 (193)
T ss_pred hHHHhHhHHHHHHHHHHHhc
Confidence 6411 11244555554443
No 149
>PRK04148 hypothetical protein; Provisional
Probab=99.12 E-value=1.7e-09 Score=79.21 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecccch-hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc
Q 043853 53 LYKLIEDCAGLRDDGSEIVLDLFCGTGT-IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF 131 (222)
Q Consensus 53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~-~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~ 131 (222)
+.+++.+.+... ++.+++|+|||+|. ++..+++.+..|+|+|+++.+++.++++ .++++.+|+++....+
T Consensus 4 i~~~l~~~~~~~--~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 4 IAEFIAENYEKG--KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHHHhcccc--cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHH
Confidence 445555554322 35789999999996 8888998888999999999999988775 3689999998876554
Q ss_pred CCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEE
Q 043853 132 GNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 132 ~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~ 168 (222)
- ..+|+|.+.=|..++.+.+++..+.....-+++
T Consensus 75 y---~~a~liysirpp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 75 Y---KNAKLIYSIRPPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred H---hcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3 369999887666778888888777666544444
No 150
>PRK01581 speE spermidine synthase; Validated
Probab=99.11 E-value=2.6e-09 Score=90.54 Aligned_cols=103 Identities=17% Similarity=0.047 Sum_probs=75.9
Q ss_pred CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHH-----H--cCCCcEEEEeCchhchhhhcCCCCCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAK-----L--NNISNATFVQGDLNKIGGDFGNAFPK 137 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~-----~--~~~~~v~~~~~d~~~~~~~~~~~~~~ 137 (222)
+.++||++|||.|..+..+.+.. .+|+++|+|+++++.|++... . ...++++++.+|+.++.... .+.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~---~~~ 226 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP---SSL 226 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc---CCC
Confidence 46799999999999887777654 599999999999999996311 1 12346999999999987542 247
Q ss_pred CcEEEECCCCCC-------ccHHHHHHHHh-CCCCcEEEEeeC
Q 043853 138 PDIVISDPNRPG-------MHMKLIKFLLK-LKAPRIVYVSCN 172 (222)
Q Consensus 138 fD~ii~~pp~~~-------~~~~~~~~l~~-l~~~~~v~~~~~ 172 (222)
||+|++|.|... ...++.+.+.. |+|+|++.....
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 999999976321 12445555544 899998776554
No 151
>PRK08317 hypothetical protein; Provisional
Probab=99.11 E-value=3e-09 Score=85.55 Aligned_cols=110 Identities=24% Similarity=0.154 Sum_probs=77.2
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh
Q 043853 54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD 130 (222)
Q Consensus 54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 130 (222)
.+.+.+.+... ++.+|||+|||+|.++..+++.. .+++|+|.++.+++.++++... ...++++..+|+...+..
T Consensus 8 ~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 8 RARTFELLAVQ--PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHHcCCC--CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCC
Confidence 34444554444 37899999999999999888753 4899999999999999998332 234689999998765432
Q ss_pred cCCCCCCCcEEEECCC---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853 131 FGNAFPKPDIVISDPN---RPGMHMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 131 ~~~~~~~fD~ii~~pp---~~~~~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
.+.||+|++... ... ...+++.+ ..++++|.+++..
T Consensus 85 ----~~~~D~v~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 85 ----DGSFDAVRSDRVLQHLED-PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred ----CCCceEEEEechhhccCC-HHHHHHHHHHHhcCCcEEEEEe
Confidence 247999988653 122 23444444 3478988876543
No 152
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.09 E-value=3.6e-09 Score=85.26 Aligned_cols=100 Identities=25% Similarity=0.250 Sum_probs=74.4
Q ss_pred CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++..++.. ++.+..+|+.+.... .+.||+|+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~D~I~ 126 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP----DNSFDAVT 126 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC----CCCccEEE
Confidence 36799999999999999888754 69999999999999999998775553 489999999876431 24799998
Q ss_pred ECCC--CCCccHHHHHHH-HhCCCCcEEEEe
Q 043853 143 SDPN--RPGMHMKLIKFL-LKLKAPRIVYVS 170 (222)
Q Consensus 143 ~~pp--~~~~~~~~~~~l-~~l~~~~~v~~~ 170 (222)
++-- .......+++.+ ..++++|.+++.
T Consensus 127 ~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 127 IAFGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred EecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 7532 111224445544 447888877654
No 153
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.5e-08 Score=82.24 Aligned_cols=102 Identities=18% Similarity=0.122 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh
Q 043853 51 EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD 130 (222)
Q Consensus 51 ~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 130 (222)
...++.+.+.++..+ ++.|||||+|.|.+|..+++.+.+|+++|+|+.+++..++... ..++++++++|+......
T Consensus 16 ~~v~~kIv~~a~~~~--~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 16 KNVIDKIVEAANISP--GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHHhcCCCC--CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcch
Confidence 344566666665554 7899999999999999999999999999999999999999875 235799999999887653
Q ss_pred cCCCCCCCcEEEECCCCCCccHHHHHHHHh
Q 043853 131 FGNAFPKPDIVISDPNRPGMHMKLIKFLLK 160 (222)
Q Consensus 131 ~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~ 160 (222)
-. ..++.|++|.|+.-. ..++..+..
T Consensus 92 ~l---~~~~~vVaNlPY~Is-spii~kll~ 117 (259)
T COG0030 92 SL---AQPYKVVANLPYNIS-SPILFKLLE 117 (259)
T ss_pred hh---cCCCEEEEcCCCccc-HHHHHHHHh
Confidence 11 157899999997654 455554443
No 154
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.08 E-value=3.1e-09 Score=89.49 Aligned_cols=166 Identities=23% Similarity=0.336 Sum_probs=94.5
Q ss_pred CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc---------CCeEEEEeCCHHHHHHHHHHHH
Q 043853 40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---------VKHVYGYEVVPQAISDACRNAK 110 (222)
Q Consensus 40 ~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---------~~~v~gvD~~~~~i~~a~~n~~ 110 (222)
+.||. +......+.+++ . +.++.+|+|.+||+|++.+.+.+. ..+++|+|+++.++..|+-|+.
T Consensus 26 G~~~T-P~~i~~l~~~~~----~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~ 98 (311)
T PF02384_consen 26 GQFYT-PREIVDLMVKLL----N--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL 98 (311)
T ss_dssp GGC----HHHHHHHHHHH----T--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH
T ss_pred ceeeh-HHHHHHHHHhhh----h--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh
Confidence 34553 355555544444 2 234678999999999999977652 3489999999999999999998
Q ss_pred HcCCCc--EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCc-----------------------cHHHHH-HHHhCCCC
Q 043853 111 LNNISN--ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGM-----------------------HMKLIK-FLLKLKAP 164 (222)
Q Consensus 111 ~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~-----------------------~~~~~~-~l~~l~~~ 164 (222)
..+... ..+..+|........ ....||+|++|||.... ...++. .+..++++
T Consensus 99 l~~~~~~~~~i~~~d~l~~~~~~--~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~ 176 (311)
T PF02384_consen 99 LHGIDNSNINIIQGDSLENDKFI--KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPG 176 (311)
T ss_dssp HTTHHCBGCEEEES-TTTSHSCT--ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEE
T ss_pred hhccccccccccccccccccccc--cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccc
Confidence 877643 578899976554321 12479999999994322 012323 34557776
Q ss_pred cEE-EEeeC-c---cchHhhHH-HhhccCCCCccCCCe-EEeEeeeeccCCCCCceeEEEEEEeC
Q 043853 165 RIV-YVSCN-P---ATCARDLD-YLCHGVGDQNIKGCY-KLKSLQPVDMFPHTPHIECVCLLELS 222 (222)
Q Consensus 165 ~~v-~~~~~-~---~~~~~~~~-~l~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~v~~~~~~ 222 (222)
|.+ ++..+ . ......++ .+. +.++ +-+-.-|-.+|+.+..-.+|.+|.++
T Consensus 177 G~~~~Ilp~~~L~~~~~~~~iR~~ll--------~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~ 233 (311)
T PF02384_consen 177 GRAAIILPNGFLFSSSSEKKIRKYLL--------ENGYIEAVISLPSNLFKPTGVPTSILILNKK 233 (311)
T ss_dssp EEEEEEEEHHHHHGSTHHHHHHHHHH--------HHEEEEEEEE--TTSSSSSSS-EEEEEEEES
T ss_pred cceeEEecchhhhccchHHHHHHHHH--------hhchhhEEeecccceecccCcCceEEEEeec
Confidence 654 32221 1 11223343 332 2222 22222355788888888889888763
No 155
>PRK03612 spermidine synthase; Provisional
Probab=99.07 E-value=2.7e-09 Score=95.73 Aligned_cols=103 Identities=19% Similarity=0.203 Sum_probs=77.2
Q ss_pred CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHH--H-c----CCCcEEEEeCchhchhhhcCCCCCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAK--L-N----NISNATFVQGDLNKIGGDFGNAFPK 137 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~--~-~----~~~~v~~~~~d~~~~~~~~~~~~~~ 137 (222)
+.++|||+|||+|..+..+++.. .+++++|+|+++++.++++.. . + ..++++++.+|+.++..... ++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~---~~ 373 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA---EK 373 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC---CC
Confidence 46799999999999999887753 599999999999999999532 1 1 12469999999998765422 48
Q ss_pred CcEEEECCCCCC-------ccHHHHHHHH-hCCCCcEEEEeeC
Q 043853 138 PDIVISDPNRPG-------MHMKLIKFLL-KLKAPRIVYVSCN 172 (222)
Q Consensus 138 fD~ii~~pp~~~-------~~~~~~~~l~-~l~~~~~v~~~~~ 172 (222)
||+|++|+|... ...++.+.++ .++|+|++++...
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 999999987432 1234555544 4899999887653
No 156
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.06 E-value=8.7e-10 Score=88.15 Aligned_cols=98 Identities=21% Similarity=0.166 Sum_probs=68.3
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc------------CCCcEEEEeCchhchhhhcCCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN------------NISNATFVQGDLNKIGGDFGNA 134 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~------------~~~~v~~~~~d~~~~~~~~~~~ 134 (222)
++.+|||+|||.|..++.+|+.+.+|+|+|+|+.+++.+....... ...++++.++|+.++....
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~--- 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD--- 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc---
Confidence 3579999999999999999999999999999999999874311100 1134899999998875431
Q ss_pred CCCCcEEE-----ECCCCCCccHHHHHHHHh-CCCCcEEE
Q 043853 135 FPKPDIVI-----SDPNRPGMHMKLIKFLLK-LKAPRIVY 168 (222)
Q Consensus 135 ~~~fD~ii-----~~pp~~~~~~~~~~~l~~-l~~~~~v~ 168 (222)
...||.|+ +..| ..........+.. ++|+|.++
T Consensus 114 ~~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 114 LADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred CCCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEE
Confidence 23688886 2222 1223445555544 78997544
No 157
>PLN02366 spermidine synthase
Probab=99.06 E-value=7.1e-09 Score=86.92 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=77.7
Q ss_pred CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHc--C--CCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLN--N--ISNATFVQGDLNKIGGDFGNAFPKPDI 140 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~--~--~~~v~~~~~d~~~~~~~~~~~~~~fD~ 140 (222)
+.++||++|||.|..+..+++.. .+++.+|+|+.+++.|++.+... + -++++++.+|+.++..... .++||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~--~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP--EGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc--CCCCCE
Confidence 46899999999999999888763 48999999999999999988653 2 2469999999988765431 247999
Q ss_pred EEECCCCCC------ccHHHHHHHH-hCCCCcEEEEee
Q 043853 141 VISDPNRPG------MHMKLIKFLL-KLKAPRIVYVSC 171 (222)
Q Consensus 141 ii~~pp~~~------~~~~~~~~l~-~l~~~~~v~~~~ 171 (222)
|++|.+... ...++.+.+. .|+|+|++...+
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 999864221 1234555554 489999987544
No 158
>PRK05785 hypothetical protein; Provisional
Probab=99.06 E-value=2.9e-09 Score=85.67 Aligned_cols=84 Identities=15% Similarity=0.135 Sum_probs=62.4
Q ss_pred CCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 68 SEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
+.+|||+|||+|.++..+++. +.+++|+|+|+.|++.|++. ...+++|+.+++. +++.||+|++...
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~----~d~sfD~v~~~~~ 119 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPF----RDKSFDVVMSSFA 119 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEechhhCCC----CCCCEEEEEecCh
Confidence 679999999999999999876 46999999999999999864 1356788877654 2358999998764
Q ss_pred ---CCCccHHHHHHHHh-CCCC
Q 043853 147 ---RPGMHMKLIKFLLK-LKAP 164 (222)
Q Consensus 147 ---~~~~~~~~~~~l~~-l~~~ 164 (222)
..+ ....+..+.+ ++|.
T Consensus 120 l~~~~d-~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 120 LHASDN-IEKVIAEFTRVSRKQ 140 (226)
T ss_pred hhccCC-HHHHHHHHHHHhcCc
Confidence 122 2344554443 6763
No 159
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.06 E-value=7.5e-10 Score=98.47 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=72.8
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
++.+|||+|||+|.++..+++.+.+++|+|+++.+++.+++... ..++++++++|+.+....+ +.+.||+|+++.+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~--~~~~fD~I~~~~~ 112 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNI--SDGSVDLIFSNWL 112 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCC--CCCCEEEEehhhh
Confidence 36799999999999999999888899999999999988765321 2356899999986432222 2257999999875
Q ss_pred CCCc----cHHHHHHHHh-CCCCcEEEEe
Q 043853 147 RPGM----HMKLIKFLLK-LKAPRIVYVS 170 (222)
Q Consensus 147 ~~~~----~~~~~~~l~~-l~~~~~v~~~ 170 (222)
..-+ ...++..+.+ ++++|.+++.
T Consensus 113 l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 113 LMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 2221 1344444443 7899988764
No 160
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=99.05 E-value=1.5e-08 Score=91.19 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=73.6
Q ss_pred CccccCCHHHHHHHHHHHHHHhcCC-CCCCCeEEEEecccchhHHHHhhcC----------CeEEEEeCCHHHHHHHHHH
Q 043853 40 NSFFQTNTHQAEVLYKLIEDCAGLR-DDGSEIVLDLFCGTGTIGLTLARWV----------KHVYGYEVVPQAISDACRN 108 (222)
Q Consensus 40 ~~f~~~~~~~~~~~~~~i~~~~~~~-~~~~~~vlDlg~G~G~~~~~la~~~----------~~v~gvD~~~~~i~~a~~n 108 (222)
+.|| ++...++.+++++....... .....+|+|++||+|.+.+++++.. ..++|+|+++.+++.++.|
T Consensus 4 Gqfy-TP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 4 GTFF-TPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred cccC-CcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 4455 45778888777765432210 0135689999999999999776532 3789999999999999999
Q ss_pred HHHcCCCcEEEEeCchhchhhhcC-CCCCCCcEEEECCCCC
Q 043853 109 AKLNNISNATFVQGDLNKIGGDFG-NAFPKPDIVISDPNRP 148 (222)
Q Consensus 109 ~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~fD~ii~~pp~~ 148 (222)
+...+.-++.+.+.|......... ...+.||+|+.|||+.
T Consensus 83 l~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 83 LGEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYG 123 (524)
T ss_pred HhhcCCCCceeeecccccccccccccccCcccEEEeCCCcc
Confidence 987763235666666543321111 1124799999999954
No 161
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.05 E-value=4e-11 Score=83.80 Aligned_cols=94 Identities=18% Similarity=0.130 Sum_probs=54.9
Q ss_pred EEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC--
Q 043853 72 LDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR-- 147 (222)
Q Consensus 72 lDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~-- 147 (222)
||+|||+|.++..+.+. ..+++|+|+|+.|++.|++++......+......+..+...... .+.||+|++.-..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDP--PESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC------SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhccc--ccccceehhhhhHhh
Confidence 79999999999988877 45999999999999999999988776544444444433322211 1489999887542
Q ss_pred CCccHHHHHHHHh-CCCCcEE
Q 043853 148 PGMHMKLIKFLLK-LKAPRIV 167 (222)
Q Consensus 148 ~~~~~~~~~~l~~-l~~~~~v 167 (222)
-.-...+++.+.. ++|+|++
T Consensus 79 l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhHHHHHHHHHHHcCCCCCC
Confidence 2223344444443 6888864
No 162
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.05 E-value=7.9e-09 Score=82.63 Aligned_cols=101 Identities=20% Similarity=0.170 Sum_probs=79.8
Q ss_pred CCCCCCeEEEEecccchhHHHHhhcC--------CeEEEEeCCHHHHHHHHHHHHHcCCC---cEEEEeCchhchhhhcC
Q 043853 64 RDDGSEIVLDLFCGTGTIGLTLARWV--------KHVYGYEVVPQAISDACRNAKLNNIS---NATFVQGDLNKIGGDFG 132 (222)
Q Consensus 64 ~~~~~~~vlDlg~G~G~~~~~la~~~--------~~v~gvD~~~~~i~~a~~n~~~~~~~---~v~~~~~d~~~~~~~~~ 132 (222)
.+..+.++||++||||-++..+.+.. .+|+.+|+||+|+..+++..++.++. .+.++.+|+++++.
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF--- 173 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF--- 173 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC---
Confidence 34567999999999999999887642 48999999999999999999776653 38999999999986
Q ss_pred CCCCCCcEEEECCC---CCCccHHHHHHHHhCCCCcEEE
Q 043853 133 NAFPKPDIVISDPN---RPGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 133 ~~~~~fD~ii~~pp---~~~~~~~~~~~l~~l~~~~~v~ 168 (222)
+++.||...+.-- .......+.++.+.|+|||.++
T Consensus 174 -dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 174 -DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred -CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 3468998755432 2344567777788899999876
No 163
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.05 E-value=8.4e-09 Score=85.21 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=76.0
Q ss_pred CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNN----ISNATFVQGDLNKIGGDFGNAFPKPDI 140 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~ 140 (222)
+.++||++|||+|.++..+++. ..+++++|+|+.+++.|++++...+ .++++++.+|+.++.... .++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~---~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT---ENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC---CCCccE
Confidence 3569999999999999877665 3589999999999999999886532 235899999998876542 248999
Q ss_pred EEECCCCCC------ccHHHHHHHH-hCCCCcEEEEee
Q 043853 141 VISDPNRPG------MHMKLIKFLL-KLKAPRIVYVSC 171 (222)
Q Consensus 141 ii~~pp~~~------~~~~~~~~l~-~l~~~~~v~~~~ 171 (222)
|++|++... ...++.+.+. .|+++|++.+..
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 999986221 1234444443 489999987654
No 164
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.05 E-value=2.6e-09 Score=87.87 Aligned_cols=132 Identities=14% Similarity=0.191 Sum_probs=81.9
Q ss_pred EEEcCCccccCCHHHHHHHHHHHHHH-hc-CCCCCCCeEEEEecccch----hHHHHhhc-------CCeEEEEeCCHHH
Q 043853 35 FQISANSFFQTNTHQAEVLYKLIEDC-AG-LRDDGSEIVLDLFCGTGT----IGLTLARW-------VKHVYGYEVVPQA 101 (222)
Q Consensus 35 ~~~~~~~f~~~~~~~~~~~~~~i~~~-~~-~~~~~~~~vlDlg~G~G~----~~~~la~~-------~~~v~gvD~~~~~ 101 (222)
+.++.+.|+.... ..+.+.+.+... .. ....+..+|+|+|||+|- +++.+++. ..+|+|+|+|+.|
T Consensus 66 lti~~T~FfR~~~-~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~ 144 (264)
T smart00138 66 MTTNETRFFRESK-HFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKA 144 (264)
T ss_pred hhcCCCcccCCcH-HHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHH
Confidence 4556778887543 333344443322 21 112235799999999996 45555442 2389999999999
Q ss_pred HHHHHHHHHH----cCC-----------------------CcEEEEeCchhchhhhcCCCCCCCcEEEECCC--C--CCc
Q 043853 102 ISDACRNAKL----NNI-----------------------SNATFVQGDLNKIGGDFGNAFPKPDIVISDPN--R--PGM 150 (222)
Q Consensus 102 i~~a~~n~~~----~~~-----------------------~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp--~--~~~ 150 (222)
++.|++.+.. .++ .++++.+.|+.+.+.. .+.||+|++.-- + ...
T Consensus 145 L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~----~~~fD~I~crnvl~yf~~~~ 220 (264)
T smart00138 145 LEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPP----LGDFDLIFCRNVLIYFDEPT 220 (264)
T ss_pred HHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCc----cCCCCEEEechhHHhCCHHH
Confidence 9999986410 111 2488999999875431 257999998421 1 011
Q ss_pred cHHHHHHHH-hCCCCcEEEEee
Q 043853 151 HMKLIKFLL-KLKAPRIVYVSC 171 (222)
Q Consensus 151 ~~~~~~~l~-~l~~~~~v~~~~ 171 (222)
...+++.+. .++|+|.+++..
T Consensus 221 ~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 221 QRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred HHHHHHHHHHHhCCCeEEEEEC
Confidence 234444443 489999998754
No 165
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.04 E-value=1.7e-09 Score=83.49 Aligned_cols=122 Identities=20% Similarity=0.171 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHh----cCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcC--C-CcEEE
Q 043853 49 QAEVLYKLIEDCA----GLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNN--I-SNATF 119 (222)
Q Consensus 49 ~~~~~~~~i~~~~----~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~--~-~~v~~ 119 (222)
.+..+.+++.... ......+.+|||+|||+|..++.++.. ..+|+..|.++ .++.++.|++.|+ . .++.+
T Consensus 23 aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v 101 (173)
T PF10294_consen 23 AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSV 101 (173)
T ss_dssp HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EE
T ss_pred hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccC
Confidence 3444455555532 112234789999999999999999887 66999999999 9999999999987 3 34888
Q ss_pred EeCchhchh-hhcCCCCCCCcEEEECCC--CCCccHHHHHHHHh-CCCCcEEEEeeC
Q 043853 120 VQGDLNKIG-GDFGNAFPKPDIVISDPN--RPGMHMKLIKFLLK-LKAPRIVYVSCN 172 (222)
Q Consensus 120 ~~~d~~~~~-~~~~~~~~~fD~ii~~pp--~~~~~~~~~~~l~~-l~~~~~v~~~~~ 172 (222)
...|+.+.. .... +...||+|+..-- .....+.+.+.+.. +++++.+|+++.
T Consensus 102 ~~L~Wg~~~~~~~~-~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 102 RPLDWGDELDSDLL-EPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EE--TTS-HHHHHH-S-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cEEEecCccccccc-ccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 888876532 1211 1247999987542 23556777777766 566655776663
No 166
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.04 E-value=1.4e-09 Score=90.58 Aligned_cols=98 Identities=27% Similarity=0.339 Sum_probs=75.6
Q ss_pred CCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
++.|||+|||+|.+++..|+.+ .+|+|+|.|..+ +.|++.+..|++++ ++++++.+++...+ .+++|+|++-.
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP----~eKVDiIvSEW 135 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP----VEKVDIIVSEW 135 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC----ccceeEEeehh
Confidence 7899999999999999888765 599999998554 99999999999988 99999999888432 25899999964
Q ss_pred C-CCCccHHHHHHHH-----hCCCCcEEEEe
Q 043853 146 N-RPGMHMKLIKFLL-----KLKAPRIVYVS 170 (222)
Q Consensus 146 p-~~~~~~~~~~~l~-----~l~~~~~v~~~ 170 (222)
= +.-+...+++.+. .|+++|++|-+
T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 2 1112234444332 27899988733
No 167
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.02 E-value=7.9e-09 Score=86.86 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=72.4
Q ss_pred CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
+..+|||+|||+|.+++.+++..+ +++++|. |.+++.+++++...++.+ ++++.+|+.+... +.+|++++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~------~~~D~v~~ 221 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY------PEADAVLF 221 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC------CCCCEEEe
Confidence 468999999999999999988764 8999997 899999999999998864 9999999976332 24688765
Q ss_pred CCC-C--C-CccHHHHHHH-HhCCCCcEEEEee
Q 043853 144 DPN-R--P-GMHMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 144 ~pp-~--~-~~~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
.-- . . .....+++.+ +.++|+|.+++..
T Consensus 222 ~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 431 1 1 1112345444 4489988886653
No 168
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.00 E-value=1.5e-08 Score=89.41 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=69.6
Q ss_pred CCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853 65 DDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 65 ~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
+.++.+|||+|||.|+-+..+|... ..++++|+++.-++.+++|++..|+.++.+.+.|...+...+. ..||.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~---~~fD~I 187 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALP---ETFDAI 187 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhch---hhcCeE
Confidence 3468899999999999999888642 4899999999999999999999999999999999887644322 369999
Q ss_pred EECCCCCC
Q 043853 142 ISDPNRPG 149 (222)
Q Consensus 142 i~~pp~~~ 149 (222)
++|+|.++
T Consensus 188 LvDaPCSG 195 (470)
T PRK11933 188 LLDAPCSG 195 (470)
T ss_pred EEcCCCCC
Confidence 99999553
No 169
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.00 E-value=2.6e-08 Score=77.85 Aligned_cols=106 Identities=23% Similarity=0.217 Sum_probs=67.3
Q ss_pred CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh--hc--CCCCCCCc
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG--DF--GNAFPKPD 139 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~--~~~~~~fD 139 (222)
++.+|||+|||+|.++..+++.. .+++++|+|+.+ +.++++++++|+.+... .+ ..+.+.||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 47899999999999999887643 379999999864 23457888888865321 00 01224799
Q ss_pred EEEECCC--CCCc-----------cHHHHHHH-HhCCCCcEEEEeeC-ccchHhhHHHh
Q 043853 140 IVISDPN--RPGM-----------HMKLIKFL-LKLKAPRIVYVSCN-PATCARDLDYL 183 (222)
Q Consensus 140 ~ii~~pp--~~~~-----------~~~~~~~l-~~l~~~~~v~~~~~-~~~~~~~~~~l 183 (222)
+|+++++ ..+. ...++..+ +.++|+|.+++... ......-+..+
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l 159 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNEL 159 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHH
Confidence 9999852 1111 12333333 34789999887553 33334444444
No 170
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.00 E-value=1.6e-08 Score=80.85 Aligned_cols=143 Identities=22% Similarity=0.229 Sum_probs=93.3
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHH-c-----------CCCcEEEEeCchhchhhhcCCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKL-N-----------NISNATFVQGDLNKIGGDFGNA 134 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~-~-----------~~~~v~~~~~d~~~~~~~~~~~ 134 (222)
++.+||.+|||.|.-...||..+.+|+|+|+|+.+++.+.+.... . ...++++.++|++++.....
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~-- 114 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV-- 114 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH--
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc--
Confidence 367999999999999999999888999999999999998433221 1 11247999999999765422
Q ss_pred CCCCcEEEEC-----CCCCCccHHHHHHHHh-CCCCcEEEEee----------Cc-cchHhhHHHhhccCCCCccCCCeE
Q 043853 135 FPKPDIVISD-----PNRPGMHMKLIKFLLK-LKAPRIVYVSC----------NP-ATCARDLDYLCHGVGDQNIKGCYK 197 (222)
Q Consensus 135 ~~~fD~ii~~-----pp~~~~~~~~~~~l~~-l~~~~~v~~~~----------~~-~~~~~~~~~l~~~~~~~~~~~~~~ 197 (222)
++||+|+=- .| ...-.+..+.+.. ++|++.+++-+ .| .....++..+. ..+|+
T Consensus 115 -g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~--------~~~f~ 184 (218)
T PF05724_consen 115 -GKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELF--------GPGFE 184 (218)
T ss_dssp -HSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHH--------TTTEE
T ss_pred -CCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHh--------cCCcE
Confidence 379998432 12 1334555666655 57877733222 12 12223455553 68899
Q ss_pred EeEeeeeccCCC---------CCceeEEEEEEe
Q 043853 198 LKSLQPVDMFPH---------TPHIECVCLLEL 221 (222)
Q Consensus 198 ~~~~~~~~~~p~---------~~~~~~v~~~~~ 221 (222)
+..+...+..+. ..-.+.+.+|+|
T Consensus 185 i~~l~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 217 (218)
T PF05724_consen 185 IEELEEEDSIEEEPRFKSWGLSRFREKVYVLRR 217 (218)
T ss_dssp EEEEEEEE-TTT-HHHHCCT-SS-EEEEEEEEE
T ss_pred EEEEecccccccccchhhcCcCceeEEEEEEEc
Confidence 999888776665 445677888776
No 171
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.99 E-value=1.8e-08 Score=80.11 Aligned_cols=104 Identities=18% Similarity=0.154 Sum_probs=68.5
Q ss_pred CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK 137 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~ 137 (222)
++.+|||+|||+|.++..+++.. ..|+|+|+++. +..++++++++|+.+.. ..+ ....
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~--~~~~ 117 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERV--GDSK 117 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHh--CCCC
Confidence 46799999999999999887753 48999999981 23456899999998753 111 1257
Q ss_pred CcEEEECC-C-CCCc-----------cHHHHHHH-HhCCCCcEEEEeeC-ccchHhhHHHh
Q 043853 138 PDIVISDP-N-RPGM-----------HMKLIKFL-LKLKAPRIVYVSCN-PATCARDLDYL 183 (222)
Q Consensus 138 fD~ii~~p-p-~~~~-----------~~~~~~~l-~~l~~~~~v~~~~~-~~~~~~~~~~l 183 (222)
||+|++++ | ..+. ...+++.+ +.++|+|.+++... ...+..-+..+
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l 178 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREI 178 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHH
Confidence 99999986 3 1111 01233333 33899999887553 33333334443
No 172
>PRK10742 putative methyltransferase; Provisional
Probab=98.98 E-value=1.6e-08 Score=81.37 Aligned_cols=91 Identities=20% Similarity=0.190 Sum_probs=73.3
Q ss_pred HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc------CC---CcEEEEeCchh
Q 043853 55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN------NI---SNATFVQGDLN 125 (222)
Q Consensus 55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~------~~---~~v~~~~~d~~ 125 (222)
+.+...+++++....+|||+++|+|..++.++..+.+|+++|.||.+....+++++.. +. .+++++++|..
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~ 155 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence 4455555555533349999999999999999888888999999999999999999874 22 45999999999
Q ss_pred chhhhcCCCCCCCcEEEECCCCC
Q 043853 126 KIGGDFGNAFPKPDIVISDPNRP 148 (222)
Q Consensus 126 ~~~~~~~~~~~~fD~ii~~pp~~ 148 (222)
++..... ..||+|++|||+.
T Consensus 156 ~~L~~~~---~~fDVVYlDPMfp 175 (250)
T PRK10742 156 TALTDIT---PRPQVVYLDPMFP 175 (250)
T ss_pred HHHhhCC---CCCcEEEECCCCC
Confidence 9987643 3699999999843
No 173
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.98 E-value=1.5e-08 Score=80.67 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=72.8
Q ss_pred CCCeEEEEecccchhHHHHhhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~---~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
++.+|||+|||+|.++..+++..+ +++++|+++.+++.++++.. ...++++..+|+.+.+.. .+.||+|++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~----~~~~D~i~~ 112 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFE----DNSFDAVTI 112 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCC----CCcEEEEEE
Confidence 478999999999999998887644 89999999999999999876 233589999999876532 247999987
Q ss_pred CCC---CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853 144 DPN---RPGMHMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 144 ~pp---~~~~~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
+-. ... ...+++.+ ..++++|.+++..
T Consensus 113 ~~~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 113 AFGLRNVTD-IQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eeeeCCccc-HHHHHHHHHHHcCCCcEEEEEE
Confidence 532 122 23444444 4478999887543
No 174
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.97 E-value=6.5e-09 Score=86.05 Aligned_cols=120 Identities=16% Similarity=0.117 Sum_probs=67.8
Q ss_pred eeeecCeeE-EEcCCccccCCHHHHHHHHHHHHHHhcCCCC---CCCeEEEEecccchhHHHH-h-hcCCeEEEEeCCHH
Q 043853 27 TETLRGLTF-QISANSFFQTNTHQAEVLYKLIEDCAGLRDD---GSEIVLDLFCGTGTIGLTL-A-RWVKHVYGYEVVPQ 100 (222)
Q Consensus 27 ~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~---~~~~vlDlg~G~G~~~~~l-a-~~~~~v~gvD~~~~ 100 (222)
-...+|+.+ .++++...| ..+....++.|+.+++..... ...++||||||...+--.| + ..+.+++|+|+++.
T Consensus 59 Lk~dfgl~~wdiP~~~LcP-~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~ 137 (299)
T PF05971_consen 59 LKHDFGLDVWDIPEGRLCP-PIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPK 137 (299)
T ss_dssp HHHHH--------TTS-----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HH
T ss_pred HHHhcCCccccCCCCCcCC-CCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHH
Confidence 334478876 777776665 478888889999998864332 2468999999988664333 2 34679999999999
Q ss_pred HHHHHHHHHHHc-CCCc-EEEEeCchh-chhhhcCCCCCCCcEEEECCCC
Q 043853 101 AISDACRNAKLN-NISN-ATFVQGDLN-KIGGDFGNAFPKPDIVISDPNR 147 (222)
Q Consensus 101 ~i~~a~~n~~~~-~~~~-v~~~~~d~~-~~~~~~~~~~~~fD~ii~~pp~ 147 (222)
.++.|++|++.| ++++ ++++...-. .+........+.||+.+||||.
T Consensus 138 sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 138 SLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp HHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE----
T ss_pred HHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEecCCcc
Confidence 999999999999 8875 888766432 2233333344589999999993
No 175
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.96 E-value=7.1e-09 Score=83.55 Aligned_cols=108 Identities=21% Similarity=0.255 Sum_probs=82.4
Q ss_pred CeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHH
Q 043853 32 GLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKL 111 (222)
Q Consensus 32 ~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~ 111 (222)
+..|+-+.+..+..|+. ..+.|.+-..+++ .+.|||+|.|||.++..+.+.+.+|+|+|+||.|+....+..+.
T Consensus 29 ~~kfnkd~GQHilkNp~----v~~~I~~ka~~k~--tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~g 102 (315)
T KOG0820|consen 29 GSKFNKDFGQHILKNPL----VIDQIVEKADLKP--TDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQG 102 (315)
T ss_pred CcccccccchhhhcCHH----HHHHHHhccCCCC--CCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcC
Confidence 45555555655555533 3344444444444 78999999999999999999999999999999999999998876
Q ss_pred cCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc
Q 043853 112 NNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH 151 (222)
Q Consensus 112 ~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~ 151 (222)
...++ .+++.+|...... ..||.+++|.|+.-..
T Consensus 103 tp~~~kLqV~~gD~lK~d~------P~fd~cVsNlPyqISS 137 (315)
T KOG0820|consen 103 TPKSGKLQVLHGDFLKTDL------PRFDGCVSNLPYQISS 137 (315)
T ss_pred CCccceeeEEecccccCCC------cccceeeccCCccccC
Confidence 55445 9999999987653 3799999998865433
No 176
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.94 E-value=1.4e-08 Score=80.19 Aligned_cols=104 Identities=18% Similarity=0.147 Sum_probs=86.5
Q ss_pred CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCC--CCCCcEE
Q 043853 68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNA--FPKPDIV 141 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~--~~~fD~i 141 (222)
.+++||+|.-||+-+++.|.. ..+++++|+++...+.+.+..+..|+.. ++++++++.+...++..+ .+.||++
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 689999999999999888765 4599999999999999999999999976 999999998887665443 4689999
Q ss_pred EECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853 142 ISDPNRPGMHMKLIKFLLKLKAPRIVYVSC 171 (222)
Q Consensus 142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~~~ 171 (222)
|.|.-+..+.....+.+..+++||++.+.-
T Consensus 154 FvDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 154 FVDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEccchHHHHHHHHHHHhhcccccEEEEec
Confidence 999877666656666666789999887543
No 177
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.94 E-value=3.5e-08 Score=82.81 Aligned_cols=106 Identities=6% Similarity=-0.028 Sum_probs=69.2
Q ss_pred CCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhcCCC-CCCCcEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDFGNA-FPKPDIV 141 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~fD~i 141 (222)
++.+|||+|||+|..+..+++. ..+++++|+|+.|++.|++++..... -++.++++|..+........ .....++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 4678999999999999988775 36899999999999999998865321 13788999987643211110 0123344
Q ss_pred EECCCCCCc----cHHHHHHHH-hCCCCcEEEEeeC
Q 043853 142 ISDPNRPGM----HMKLIKFLL-KLKAPRIVYVSCN 172 (222)
Q Consensus 142 i~~pp~~~~----~~~~~~~l~-~l~~~~~v~~~~~ 172 (222)
+++.+-..+ ...+++.+. .++|+|.+.+..+
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 444331111 123444443 3789998887654
No 178
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.94 E-value=2e-08 Score=89.86 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=92.9
Q ss_pred CCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 65 DDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 65 ~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
+.++..+||||||.|.+++.+|...+ .++|+|++...+..+.+.+...+++|+.++.+|+..+...+. .+.+|-|+
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~--~~sv~~i~ 422 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLP--NNSLDGIY 422 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcC--cccccEEE
Confidence 34578999999999999999998766 899999999999999999988999999999999865544332 24688887
Q ss_pred ECCC----------CCCccHHHHHHHHh-CCCCcEEEEeeCccchHhhHH
Q 043853 143 SDPN----------RPGMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLD 181 (222)
Q Consensus 143 ~~pp----------~~~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~ 181 (222)
++.| ++-..+.+++.+.. ++++|.+++.++.........
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~ 472 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAI 472 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence 7654 34466788887765 899999999999877777643
No 179
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.91 E-value=1.1e-08 Score=77.26 Aligned_cols=104 Identities=25% Similarity=0.225 Sum_probs=69.0
Q ss_pred HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCC
Q 043853 55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNA 134 (222)
Q Consensus 55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 134 (222)
+.+..+.... .++.+|||+|||+|.++..+++.+.+++|+|+++.+++. .++.....+..+... +
T Consensus 11 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~----~ 75 (161)
T PF13489_consen 11 DLLERLLPRL-KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPF----P 75 (161)
T ss_dssp HHHHHHHTCT-TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----------TTSEEEEEECHTHHC----H
T ss_pred HHHHHHhccc-CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhc----c
Confidence 3444444321 347899999999999999998887899999999999988 122333332222221 1
Q ss_pred CCCCcEEEECCC--CCCccHHHHHHHHh-CCCCcEEEEeeCc
Q 043853 135 FPKPDIVISDPN--RPGMHMKLIKFLLK-LKAPRIVYVSCNP 173 (222)
Q Consensus 135 ~~~fD~ii~~pp--~~~~~~~~~~~l~~-l~~~~~v~~~~~~ 173 (222)
.+.||+|++.-- .-.-...+++.+.+ ++|+|.++++...
T Consensus 76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 248999999753 11123556666655 7899998877743
No 180
>PRK06202 hypothetical protein; Provisional
Probab=98.89 E-value=9.9e-09 Score=82.83 Aligned_cols=95 Identities=23% Similarity=0.292 Sum_probs=63.5
Q ss_pred CCCeEEEEecccchhHHHHhhc----C--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW----V--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDI 140 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~----~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 140 (222)
++.+|||+|||+|.++..+++. + .+++|+|+|+.|++.|+++....+ +++...+...+.. ..+.||+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~l~~----~~~~fD~ 132 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG---VTFRQAVSDELVA----EGERFDV 132 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC---CeEEEEecccccc----cCCCccE
Confidence 4679999999999999887742 2 389999999999999998865433 4555555544432 1257999
Q ss_pred EEECCCCCCc----cHHHHHHHHhCCCCcEEE
Q 043853 141 VISDPNRPGM----HMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 141 ii~~pp~~~~----~~~~~~~l~~l~~~~~v~ 168 (222)
|+++..-.-+ ...++..+.++..+.+++
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~~~~~i 164 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALARRLVLH 164 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcCeeEEE
Confidence 9998641111 124555555444444444
No 181
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.89 E-value=4.6e-09 Score=82.88 Aligned_cols=106 Identities=23% Similarity=0.223 Sum_probs=81.8
Q ss_pred CCCCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchhhhcCCCCCCCcE
Q 043853 64 RDDGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIGGDFGNAFPKPDI 140 (222)
Q Consensus 64 ~~~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~fD~ 140 (222)
.+..+.+|||.+.|-|+.++..++.+. .|+.+|.||..++.|+-|--..++. +++++.||+.+...++. ++.||+
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~--D~sfDa 208 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD--DESFDA 208 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC--ccccce
Confidence 344689999999999999998777666 9999999999999998876444443 47999999999987764 357999
Q ss_pred EEECCCCCCcc-----HHHHHHHH-hCCCCcEEEEee
Q 043853 141 VISDPNRPGMH-----MKLIKFLL-KLKAPRIVYVSC 171 (222)
Q Consensus 141 ii~~pp~~~~~-----~~~~~~l~-~l~~~~~v~~~~ 171 (222)
|+.||||-... .++-+.+. -|+++|.++...
T Consensus 209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 99999964432 34444443 378888886554
No 182
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=8.2e-08 Score=77.48 Aligned_cols=126 Identities=23% Similarity=0.233 Sum_probs=94.0
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhh
Q 043853 54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGG 129 (222)
Q Consensus 54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~ 129 (222)
+.+|..++.+.+ +.+|+|-|+|+|+++.++++.. .+++.+|.+....+.|++-++..++.+ +++.+-|+....+
T Consensus 94 ia~I~~~L~i~P--GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 94 IAMILSMLEIRP--GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHHhcCCC--CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 566777776665 9999999999999999999864 499999999999999999999999864 9999999876544
Q ss_pred hcCCCCCCCcEEEECCCCCCcc-HHHHHHHHhCCCCcEEEEeeCccchHhhHHHhh
Q 043853 130 DFGNAFPKPDIVISDPNRPGMH-MKLIKFLLKLKAPRIVYVSCNPATCARDLDYLC 184 (222)
Q Consensus 130 ~~~~~~~~fD~ii~~pp~~~~~-~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~ 184 (222)
... ...+|.|++|.|.+... +.+.+ +.....++++-++-+-+...+.++.++
T Consensus 172 ~~k--s~~aDaVFLDlPaPw~AiPha~~-~lk~~g~r~csFSPCIEQvqrtce~l~ 224 (314)
T KOG2915|consen 172 LIK--SLKADAVFLDLPAPWEAIPHAAK-ILKDEGGRLCSFSPCIEQVQRTCEALR 224 (314)
T ss_pred ccc--ccccceEEEcCCChhhhhhhhHH-HhhhcCceEEeccHHHHHHHHHHHHHH
Confidence 321 25799999999855332 33333 333334455555555666667777775
No 183
>PLN02823 spermine synthase
Probab=98.85 E-value=9.4e-08 Score=81.04 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=78.1
Q ss_pred CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNN----ISNATFVQGDLNKIGGDFGNAFPKPDI 140 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~ 140 (222)
+.++||.+|+|.|..+..+.+. ..+++.+|+|+.+++.|++.+..++ .++++++.+|+..+.... .++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~---~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR---DEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC---CCCccE
Confidence 4578999999999999877664 3589999999999999999986542 346999999999987542 358999
Q ss_pred EEECCCCC---C-----ccHHHHH-HH-HhCCCCcEEEEeeC
Q 043853 141 VISDPNRP---G-----MHMKLIK-FL-LKLKAPRIVYVSCN 172 (222)
Q Consensus 141 ii~~pp~~---~-----~~~~~~~-~l-~~l~~~~~v~~~~~ 172 (222)
|++|.+.. + ...++.+ .+ +.|+++|++.+...
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 99996421 1 2345555 44 44899998876543
No 184
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.85 E-value=3.6e-08 Score=86.67 Aligned_cols=96 Identities=22% Similarity=0.319 Sum_probs=70.7
Q ss_pred CCeEEEEecccchhHHHHhhcC------CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcE
Q 043853 68 SEIVLDLFCGTGTIGLTLARWV------KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDI 140 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~------~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ 140 (222)
+..|+|+|||+|.++...++.+ .+|+|||.|+.++..+++.++.++..+ |+++++|+.++... .++|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-----ekvDI 261 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-----EKVDI 261 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-----S-EEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-----CceeE
Confidence 5789999999999987655432 499999999999999988888888854 99999999998654 48999
Q ss_pred EEECCC----CCCccHHHHHHHHh-CCCCcEEE
Q 043853 141 VISDPN----RPGMHMKLIKFLLK-LKAPRIVY 168 (222)
Q Consensus 141 ii~~pp----~~~~~~~~~~~l~~-l~~~~~v~ 168 (222)
||+-.= ..++.++.++...+ ++|+|+++
T Consensus 262 IVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 262 IVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 998652 34456666666654 67777765
No 185
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.84 E-value=2.3e-08 Score=83.12 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=63.6
Q ss_pred CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
++..++|.+||.|+.+..+++.. .+|+|+|.||.+++.|++++.. .++++++++|..++...+......+|.|++
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~ 96 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGLGKVDGILL 96 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCCCccCEEEE
Confidence 46799999999999999998764 5899999999999999998765 446999999999886554321137999998
Q ss_pred CC
Q 043853 144 DP 145 (222)
Q Consensus 144 ~p 145 (222)
|.
T Consensus 97 DL 98 (296)
T PRK00050 97 DL 98 (296)
T ss_pred CC
Confidence 86
No 186
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=7.5e-08 Score=82.44 Aligned_cols=84 Identities=23% Similarity=0.226 Sum_probs=69.3
Q ss_pred CCCCCCeEEEEecccchhHHHHhhcCC----eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCc
Q 043853 64 RDDGSEIVLDLFCGTGTIGLTLARWVK----HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD 139 (222)
Q Consensus 64 ~~~~~~~vlDlg~G~G~~~~~la~~~~----~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD 139 (222)
.+.++.+|||++++.|+=+..+|+... .|+++|.|+.-++..++|++..|+.++.+.+.|...+...... ..+||
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~-~~~fD 231 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPG-GEKFD 231 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccc-cCcCc
Confidence 345689999999999999998887543 4799999999999999999999999999999998766543321 12699
Q ss_pred EEEECCCCC
Q 043853 140 IVISDPNRP 148 (222)
Q Consensus 140 ~ii~~pp~~ 148 (222)
.|++|+|.+
T Consensus 232 ~iLlDaPCS 240 (355)
T COG0144 232 RILLDAPCS 240 (355)
T ss_pred EEEECCCCC
Confidence 999999943
No 187
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.81 E-value=4.4e-08 Score=81.25 Aligned_cols=98 Identities=24% Similarity=0.340 Sum_probs=76.0
Q ss_pred CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
.++.|||+|||+|.++...|+. ..+|+++|-| +|.++|++.++.|.+.+ +.++.|.+++...+ ++.|++|+.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-----Ek~DviISE 250 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-----EKVDVIISE 250 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-----hhccEEEec
Confidence 3689999999999999988875 4599999986 89999999999988754 99999999887543 589999998
Q ss_pred CC-CCCccHHHHHHH----HhCCCCcEEEEe
Q 043853 145 PN-RPGMHMKLIKFL----LKLKAPRIVYVS 170 (222)
Q Consensus 145 pp-~~~~~~~~~~~l----~~l~~~~~v~~~ 170 (222)
|- .--..+++++.. +.++|.|..|-+
T Consensus 251 PMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 251 PMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred cchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 74 112234555543 237888877633
No 188
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.81 E-value=2.4e-08 Score=85.85 Aligned_cols=129 Identities=22% Similarity=0.257 Sum_probs=88.7
Q ss_pred cCCccccCCHHHHHHHHHHH---HHHhcCCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHH
Q 043853 38 SANSFFQTNTHQAEVLYKLI---EDCAGLRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKL 111 (222)
Q Consensus 38 ~~~~f~~~~~~~~~~~~~~i---~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~ 111 (222)
...+||.+.......+.-.+ ...........-++||.-+|+|.-++..+.. ..+|+..|+|+.+++..++|++.
T Consensus 17 ~~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~ 96 (377)
T PF02005_consen 17 KAPVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL 96 (377)
T ss_dssp TSSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH
T ss_pred CCCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh
Confidence 35789987777776665444 2322211112458999999999999988875 34999999999999999999999
Q ss_pred cCCCc--EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHH-HHhCCCCcEEEEee
Q 043853 112 NNISN--ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKF-LLKLKAPRIVYVSC 171 (222)
Q Consensus 112 ~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~-l~~l~~~~~v~~~~ 171 (222)
|+++. +++.+.|+..++.. ....||+|=+||- |....+++. +..++.+|++++++
T Consensus 97 N~~~~~~~~v~~~DAn~ll~~---~~~~fD~IDlDPf--GSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 97 NGLEDERIEVSNMDANVLLYS---RQERFDVIDLDPF--GSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp CT-SGCCEEEEES-HHHHHCH---STT-EEEEEE--S--S--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccCceEEEehhhHHHHhhh---ccccCCEEEeCCC--CCccHhHHHHHHHhhcCCEEEEec
Confidence 99975 89999999888742 1258999999985 444566664 46688999999887
No 189
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.81 E-value=5.3e-08 Score=76.45 Aligned_cols=71 Identities=27% Similarity=0.305 Sum_probs=54.5
Q ss_pred CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
++.+|||+|||+|.++..+++. ...++|+|+++.+++.++++ +++++++|+.+..... ..+.||+|+++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~--~~~sfD~Vi~~~ 83 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAF--PDKSFDYVILSQ 83 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhccccc--CCCCcCEEEEhh
Confidence 3679999999999999988754 45789999999999988642 4678888886532111 224799999987
Q ss_pred C
Q 043853 146 N 146 (222)
Q Consensus 146 p 146 (222)
+
T Consensus 84 ~ 84 (194)
T TIGR02081 84 T 84 (194)
T ss_pred H
Confidence 5
No 190
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=9.8e-08 Score=74.31 Aligned_cols=151 Identities=20% Similarity=0.234 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc----CCeEEEEeCCHHHHHHHHHHHHHcC--------C-
Q 043853 48 HQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW----VKHVYGYEVVPQAISDACRNAKLNN--------I- 114 (222)
Q Consensus 48 ~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~----~~~v~gvD~~~~~i~~a~~n~~~~~--------~- 114 (222)
.+-...++.+...+ .++-++||+|+|||+++..+++. +...+|||.-|+.++.+++|+...- +
T Consensus 67 ~mha~~le~L~~~L----~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~ 142 (237)
T KOG1661|consen 67 HMHATALEYLDDHL----QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLK 142 (237)
T ss_pred HHHHHHHHHHHHhh----ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhc
Confidence 34444555555544 35889999999999999988853 2255999999999999999997653 1
Q ss_pred -CcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccC
Q 043853 115 -SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIK 193 (222)
Q Consensus 115 -~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (222)
.++.++.+|....... ..+||.|.+....+.+..++++. |+++|.+.+-..+....+.+...- |+-.
T Consensus 143 ~~~l~ivvGDgr~g~~e----~a~YDaIhvGAaa~~~pq~l~dq---L~~gGrllip~~~~~~~q~~~~~d-----k~~~ 210 (237)
T KOG1661|consen 143 RGELSIVVGDGRKGYAE----QAPYDAIHVGAAASELPQELLDQ---LKPGGRLLIPVGQDGGTQYLRQID-----KNED 210 (237)
T ss_pred cCceEEEeCCccccCCc----cCCcceEEEccCccccHHHHHHh---hccCCeEEEeecccCceeEEEeec-----cccc
Confidence 2478899999776543 35899999986545554444444 477777766665544444443331 1223
Q ss_pred CCeEEeEeeeeccCCCCCcee
Q 043853 194 GCYKLKSLQPVDMFPHTPHIE 214 (222)
Q Consensus 194 ~~~~~~~~~~~~~~p~~~~~~ 214 (222)
+..++...-.+...|.++..+
T Consensus 211 gki~~~~~f~v~yvPlt~~~~ 231 (237)
T KOG1661|consen 211 GKIKLRTLFSVRYVPLTSRES 231 (237)
T ss_pred CceeeeEeeceEEEecccccc
Confidence 334444444445567666544
No 191
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.77 E-value=1.8e-07 Score=77.18 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=68.3
Q ss_pred CCCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
-.+++|||||||.|+.+..++..++ .|+|+|-++...-+.+-.-+..|.+. +...-.-+.+++. .+.||+||+
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-----~~~FDtVF~ 188 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-----LGAFDTVFS 188 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-----cCCcCEEEE
Confidence 3589999999999999998887655 79999999888777655444444433 3333344444443 247999998
Q ss_pred CCC---CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853 144 DPN---RPGMHMKLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 144 ~pp---~~~~~~~~~~~l~~-l~~~~~v~~~~ 171 (222)
--- +... -..+..++. ++++|.+++.+
T Consensus 189 MGVLYHrr~P-l~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 189 MGVLYHRRSP-LDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred eeehhccCCH-HHHHHHHHHhhCCCCEEEEEE
Confidence 652 3333 344455544 78888888776
No 192
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.77 E-value=1.6e-08 Score=77.31 Aligned_cols=72 Identities=24% Similarity=0.244 Sum_probs=64.7
Q ss_pred CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
...+.|+|+|+|.++...|+...+|+++|.+|....+|.+|+..+|..|++++.+|+.++.. +..|+|+|-.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f------e~ADvvicEm 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF------ENADVVICEM 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc------cccceeHHHH
Confidence 47899999999999999998888999999999999999999998899899999999998865 2678887753
No 193
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.77 E-value=3.6e-08 Score=77.26 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC
Q 043853 54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN 133 (222)
Q Consensus 54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~ 133 (222)
.+...+++.++.+...-|||||||+|.-+..+...+-..+|+|+||.|++.|.+. . ++ -.++.+|.-+....
T Consensus 37 ~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~--e--~e-gdlil~DMG~Glpf--- 108 (270)
T KOG1541|consen 37 AERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER--E--LE-GDLILCDMGEGLPF--- 108 (270)
T ss_pred HHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh--h--hh-cCeeeeecCCCCCC---
Confidence 3335555555555567899999999999998887778999999999999999872 2 11 36788887655433
Q ss_pred CCCCCcEEEECC
Q 043853 134 AFPKPDIVISDP 145 (222)
Q Consensus 134 ~~~~fD~ii~~p 145 (222)
..+.||-+|+-.
T Consensus 109 rpGtFDg~ISIS 120 (270)
T KOG1541|consen 109 RPGTFDGVISIS 120 (270)
T ss_pred CCCccceEEEee
Confidence 235899887643
No 194
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.76 E-value=1.4e-07 Score=75.48 Aligned_cols=99 Identities=19% Similarity=0.199 Sum_probs=68.6
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHH------------HcCCCcEEEEeCchhchhhhcCCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAK------------LNNISNATFVQGDLNKIGGDFGNA 134 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~------------~~~~~~v~~~~~d~~~~~~~~~~~ 134 (222)
++.+||.+|||.|..+..||..+.+|+|+|+|+.+++.+.+... ...-.++++.++|+.++.... ..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~-~~ 121 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA-NN 121 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-cc
Confidence 35799999999999999999999999999999999999866210 011125899999999875311 12
Q ss_pred CCCCcEEEE------CCCCCCccHHHHHHHHh-CCCCcEEE
Q 043853 135 FPKPDIVIS------DPNRPGMHMKLIKFLLK-LKAPRIVY 168 (222)
Q Consensus 135 ~~~fD~ii~------~pp~~~~~~~~~~~l~~-l~~~~~v~ 168 (222)
.+.||.|+= -|| .+-.+..+.+.. ++|++.++
T Consensus 122 ~~~fD~VyDra~~~Alpp--~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPN--DLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred cCCcCeeeeehhHhcCCH--HHHHHHHHHHHHHhCCCcEEE
Confidence 247898632 233 223444445544 67876654
No 195
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.73 E-value=2.3e-07 Score=72.12 Aligned_cols=103 Identities=17% Similarity=0.039 Sum_probs=75.9
Q ss_pred CCeEEEEecccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEE-EEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 68 SEIVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNAT-FVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
...+||+|||+|..-...-. .+..|+++|-++.|-+.|.+.++++...+++ ++.++.++++.- .+..+|.|++..
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l---~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL---ADGSYDTVVCTL 153 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc---ccCCeeeEEEEE
Confidence 44689999999997765542 3669999999999999999999988766766 999999888632 235899987654
Q ss_pred C--CCCccHHHHHHHHh-CCCCcEEEEeeCc
Q 043853 146 N--RPGMHMKLIKFLLK-LKAPRIVYVSCNP 173 (222)
Q Consensus 146 p--~~~~~~~~~~~l~~-l~~~~~v~~~~~~ 173 (222)
- ...-..+.+..+++ |+|+|.+++-.+.
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 2 11223455555554 7899988866654
No 196
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=98.69 E-value=3.8e-08 Score=83.76 Aligned_cols=121 Identities=18% Similarity=0.194 Sum_probs=95.7
Q ss_pred ccccCCCCCccccCceEEEeCCC--ceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccc
Q 043853 2 NNVNTSVGNTSVGEEEYTLYGKS--NITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTG 79 (222)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G 79 (222)
.++....+|.+...+.+.+.|+. ..++++++.+|.++.+.-|.. .++..+- +.+... . .+++.|.|++||.|
T Consensus 188 v~K~~~Itn~yR~~~~eviAGe~n~vtevre~~~~Fk~DfskVYWn-sRL~~Eh-erlsg~---f-k~gevv~D~FaGvG 261 (495)
T KOG2078|consen 188 VNKIGRITNRYRNFKLEVIAGERNLVTEVREGGERFKFDFSKVYWN-SRLSHEH-ERLSGL---F-KPGEVVCDVFAGVG 261 (495)
T ss_pred eecccchhhhhcccCceEecCCCceEEEEecCCeeEEEecceEEee-ccchhHH-HHHhhc---c-CCcchhhhhhcCcC
Confidence 34455678888999999999998 566777899999997655543 2222221 112222 2 35789999999999
Q ss_pred hhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchh
Q 043853 80 TIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIG 128 (222)
Q Consensus 80 ~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~ 128 (222)
-+++.+++.++.|++.|.+|+++++.+.|++.|.+. +++++..|+.++.
T Consensus 262 Pfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 262 PFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred ccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 999999998899999999999999999999999885 3999999998887
No 197
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.69 E-value=4.3e-08 Score=77.84 Aligned_cols=138 Identities=19% Similarity=0.207 Sum_probs=86.4
Q ss_pred eecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC----eEEEEeCCHHHHHH
Q 043853 29 TLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK----HVYGYEVVPQAISD 104 (222)
Q Consensus 29 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~----~v~gvD~~~~~i~~ 104 (222)
++++..|..+.+.|+....++..+ .-++......+..+|||+|||.|.....+.+..+ .++++|.||.+++.
T Consensus 37 k~wD~fy~~~~~rFfkdR~wL~~E----fpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~ 112 (264)
T KOG2361|consen 37 KYWDTFYKIHENRFFKDRNWLLRE----FPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIEL 112 (264)
T ss_pred hhhhhhhhhccccccchhHHHHHh----hHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHH
Confidence 446677777788888765555444 2233332222233799999999999998876533 79999999999999
Q ss_pred HHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC----CCCccHHHHHHHHh-CCCCcEEEEee
Q 043853 105 ACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN----RPGMHMKLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 105 a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp----~~~~~~~~~~~l~~-l~~~~~v~~~~ 171 (222)
.+++..... +++.....|+..-...-.-..+.+|++.+..- .++-...+++.+.. ++|||.+++-.
T Consensus 113 vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 113 VKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred HHhccccch-hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEee
Confidence 999876543 34666666664432111112246887643221 11223455555544 78999988653
No 198
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.68 E-value=2.1e-07 Score=73.98 Aligned_cols=46 Identities=22% Similarity=0.447 Sum_probs=41.0
Q ss_pred CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHc
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLN 112 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~ 112 (222)
.+..+||+||.+|.+++.+|+. ...++|+|||+..|+.|+++++..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 4678999999999999999985 348999999999999999998653
No 199
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.66 E-value=2e-07 Score=76.72 Aligned_cols=105 Identities=19% Similarity=0.188 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh
Q 043853 50 AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG 129 (222)
Q Consensus 50 ~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~ 129 (222)
.+.+++.+.+.+... ++..|||+|+|.|.++..+++.+.+++++|+++.+++..++... ..++++++.+|+.++..
T Consensus 15 ~~~~~~~Iv~~~~~~--~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 15 DPNIADKIVDALDLS--EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHHHHHHTCG--TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCG
T ss_pred CHHHHHHHHHhcCCC--CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh--hcccceeeecchhcccc
Confidence 444555566666544 47899999999999999999988999999999999999998765 34579999999988765
Q ss_pred hcCCCCCCCcEEEECCCCCCccHHHHHHHHh
Q 043853 130 DFGNAFPKPDIVISDPNRPGMHMKLIKFLLK 160 (222)
Q Consensus 130 ~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~ 160 (222)
...- ......|++|.|+ .....++..+..
T Consensus 91 ~~~~-~~~~~~vv~NlPy-~is~~il~~ll~ 119 (262)
T PF00398_consen 91 YDLL-KNQPLLVVGNLPY-NISSPILRKLLE 119 (262)
T ss_dssp GGHC-SSSEEEEEEEETG-TGHHHHHHHHHH
T ss_pred HHhh-cCCceEEEEEecc-cchHHHHHHHhh
Confidence 4210 1245689999997 555666666554
No 200
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.65 E-value=6.8e-07 Score=67.28 Aligned_cols=123 Identities=18% Similarity=0.189 Sum_probs=81.7
Q ss_pred CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCc
Q 043853 40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISN 116 (222)
Q Consensus 40 ~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~ 116 (222)
++-.+++...++.+.. .+ .+..+.-|||+|.|+|.++-++..++ ..++++|.|++.+...++.. +.
T Consensus 27 GaI~PsSs~lA~~M~s----~I--~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~ 95 (194)
T COG3963 27 GAILPSSSILARKMAS----VI--DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PG 95 (194)
T ss_pred eeecCCcHHHHHHHHh----cc--CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CC
Confidence 3445555555555433 22 23347789999999999999776543 28999999999999887764 46
Q ss_pred EEEEeCchhchhhhcCC-CCCCCcEEEECCCCCCccH----HHHHH-HHhCCCCcEEE-EeeCc
Q 043853 117 ATFVQGDLNKIGGDFGN-AFPKPDIVISDPNRPGMHM----KLIKF-LLKLKAPRIVY-VSCNP 173 (222)
Q Consensus 117 v~~~~~d~~~~~~~~~~-~~~~fD~ii~~pp~~~~~~----~~~~~-l~~l~~~~~v~-~~~~~ 173 (222)
+++++||+.+....+.. .+..||.|++..|...+.. .+++. +.++..+|.++ ++..+
T Consensus 96 ~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 96 VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 88999999887644432 3357999999987433322 33333 33467777665 34343
No 201
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=98.63 E-value=8.8e-08 Score=78.24 Aligned_cols=144 Identities=22% Similarity=0.253 Sum_probs=99.5
Q ss_pred CceEEEeCCC-ceeeeecCeeEEEcC--CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHH-HHhh-cC
Q 043853 15 EEEYTLYGKS-NITETLRGLTFQISA--NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGL-TLAR-WV 89 (222)
Q Consensus 15 ~~~~~~~g~~-~~~~~~~~~~~~~~~--~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~-~la~-~~ 89 (222)
...+.++|+. ++....+|+.|.+++ ..|...|.....++..+. -.+..|+|+++|.|++++ .+.. ++
T Consensus 147 ~~v~~L~Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK~Rv~~~s--------c~~eviVDLYAGIGYFTlpflV~agA 218 (351)
T KOG1227|consen 147 PNVQPLYGDLGWVKHVQNGITQIWDPTKTMFSRGNIKEKKRVLNTS--------CDGEVIVDLYAGIGYFTLPFLVTAGA 218 (351)
T ss_pred CccccccccccceeehhcCeEEEechhhhhhhcCcHHHHHHhhhcc--------cccchhhhhhcccceEEeehhhccCc
Confidence 4567888987 555556799999997 588888887777755443 135899999999999999 5554 45
Q ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECC-CCC-CccHHHHHHHHhCCCCcE
Q 043853 90 KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDP-NRP-GMHMKLIKFLLKLKAPRI 166 (222)
Q Consensus 90 ~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~p-p~~-~~~~~~~~~l~~l~~~~~ 166 (222)
..|+++|.+|.+++..+++++.|++.. ..++.+|-...... ...|-|.+.. |.. .-..-....|+ ...+++
T Consensus 219 k~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~-----~~AdrVnLGLlPSse~~W~~A~k~Lk-~eggsi 292 (351)
T KOG1227|consen 219 KTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR-----LRADRVNLGLLPSSEQGWPTAIKALK-PEGGSI 292 (351)
T ss_pred cEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc-----ccchheeeccccccccchHHHHHHhh-hcCCcE
Confidence 699999999999999999999998754 67777776554332 3567676653 432 22233333332 233346
Q ss_pred EEEeeC
Q 043853 167 VYVSCN 172 (222)
Q Consensus 167 v~~~~~ 172 (222)
+-+..+
T Consensus 293 lHIHen 298 (351)
T KOG1227|consen 293 LHIHEN 298 (351)
T ss_pred EEEecc
Confidence 665554
No 202
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.61 E-value=1.7e-06 Score=68.50 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=76.6
Q ss_pred EEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853 71 VLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNR 147 (222)
Q Consensus 71 vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~ 147 (222)
|.|+||-.|++++.|.+.+. +++++|+++..++.|+++++..++.+ +++..+|..+.... .+..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~----~e~~d~ivI---- 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP----GEDVDTIVI---- 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G----GG---EEEE----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC----CCCCCEEEE----
Confidence 68999999999999988754 89999999999999999999999876 99999998776543 123687776
Q ss_pred CCccHHHHHHHHh-----CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEeee
Q 043853 148 PGMHMKLIKFLLK-----LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQP 203 (222)
Q Consensus 148 ~~~~~~~~~~l~~-----l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 203 (222)
.|+....+..+.. +.....+++. |.+-...++..+. ++||.+..-..
T Consensus 73 AGMGG~lI~~ILe~~~~~~~~~~~lILq--P~~~~~~LR~~L~-------~~gf~I~~E~l 124 (205)
T PF04816_consen 73 AGMGGELIIEILEAGPEKLSSAKRLILQ--PNTHAYELRRWLY-------ENGFEIIDEDL 124 (205)
T ss_dssp EEE-HHHHHHHHHHTGGGGTT--EEEEE--ESS-HHHHHHHHH-------HTTEEEEEEEE
T ss_pred ecCCHHHHHHHHHhhHHHhccCCeEEEe--CCCChHHHHHHHH-------HCCCEEEEeEE
Confidence 3666665555443 2222334444 4445555554443 78898877443
No 203
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.59 E-value=4.3e-08 Score=77.34 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=71.2
Q ss_pred CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC--
Q 043853 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP-- 145 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p-- 145 (222)
=+++||+|||||..+..+......++|+|+|..|++.|.++= + -=++.++|+..+..... ..+||+|.+.-
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg----~-YD~L~~Aea~~Fl~~~~--~er~DLi~AaDVl 198 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKG----L-YDTLYVAEAVLFLEDLT--QERFDLIVAADVL 198 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhcc----c-hHHHHHHHHHHHhhhcc--CCcccchhhhhHH
Confidence 579999999999999999888889999999999999998752 1 12566677766664332 25899997753
Q ss_pred CCCCccHHHHH-HHHhCCCCcEEEEee
Q 043853 146 NRPGMHMKLIK-FLLKLKAPRIVYVSC 171 (222)
Q Consensus 146 p~~~~~~~~~~-~l~~l~~~~~v~~~~ 171 (222)
|+-+....+.- ....++++|.+.+|.
T Consensus 199 ~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 199 PYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred HhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 44443344444 344589999988777
No 204
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.8e-06 Score=72.73 Aligned_cols=125 Identities=21% Similarity=0.248 Sum_probs=91.4
Q ss_pred CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcE
Q 043853 40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNA 117 (222)
Q Consensus 40 ~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v 117 (222)
..||.+..+....+.-.+....... -..+|+|..+|||.-++.++...+ +++.-|+||.+++.+++|++.|...+.
T Consensus 27 pVFYNP~m~~NRDlsV~~l~~~~~~--~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~ 104 (380)
T COG1867 27 PVFYNPAMEFNRDLSVLVLKAFGKL--LPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDA 104 (380)
T ss_pred cceeCchhhhccchhHHHHHHhhcc--CCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccc
Confidence 3788776665555543333333211 157999999999999998886533 799999999999999999999966667
Q ss_pred EEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHH-HHHhCCCCcEEEEee
Q 043853 118 TFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIK-FLLKLKAPRIVYVSC 171 (222)
Q Consensus 118 ~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~-~l~~l~~~~~v~~~~ 171 (222)
..++.|+..+..... ..||+|=+||- |...++++ ++...+.+|++-+++
T Consensus 105 ~v~n~DAN~lm~~~~---~~fd~IDiDPF--GSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 105 EVINKDANALLHELH---RAFDVIDIDPF--GSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred eeecchHHHHHHhcC---CCccEEecCCC--CCCchHHHHHHHHhhcCCEEEEEe
Confidence 788899988876533 47999999985 22344555 445567788887666
No 205
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.56 E-value=4.7e-07 Score=72.75 Aligned_cols=38 Identities=29% Similarity=0.356 Sum_probs=33.6
Q ss_pred CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHH
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISD 104 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~ 104 (222)
++.++||+|||+|+++..+++. ..+++|+|.++.++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 4779999999999999999887 4589999999987765
No 206
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.56 E-value=5.3e-07 Score=74.93 Aligned_cols=83 Identities=22% Similarity=0.269 Sum_probs=68.6
Q ss_pred CCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853 65 DDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 65 ~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
+.++..|||++++.|+-+..+++.. ..+++.|+++.-++..++|++..|+.++.+...|.......... ..||.|
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~--~~fd~V 160 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPE--SKFDRV 160 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHT--TTEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccc--cccchh
Confidence 4468899999999999999888753 49999999999999999999999999999998998887433221 259999
Q ss_pred EECCCCCC
Q 043853 142 ISDPNRPG 149 (222)
Q Consensus 142 i~~pp~~~ 149 (222)
+.|+|.++
T Consensus 161 lvDaPCSg 168 (283)
T PF01189_consen 161 LVDAPCSG 168 (283)
T ss_dssp EEECSCCC
T ss_pred hcCCCccc
Confidence 99999444
No 207
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.53 E-value=2.8e-06 Score=63.32 Aligned_cols=119 Identities=21% Similarity=0.312 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhcC--CCCCCCeEEEEecccchhHHHHhh-----c-CCeEEEEeCCHHHHHHHHHHHHHcC--C-CcEE
Q 043853 50 AEVLYKLIEDCAGL--RDDGSEIVLDLFCGTGTIGLTLAR-----W-VKHVYGYEVVPQAISDACRNAKLNN--I-SNAT 118 (222)
Q Consensus 50 ~~~~~~~i~~~~~~--~~~~~~~vlDlg~G~G~~~~~la~-----~-~~~v~gvD~~~~~i~~a~~n~~~~~--~-~~v~ 118 (222)
-+.+.+.+...+.. ...+...|+|+|||.|+++..++. . ..+|+|+|.++..++.+++..+..+ . .+.+
T Consensus 6 i~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~ 85 (141)
T PF13679_consen 6 IERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLS 85 (141)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccch
Confidence 33445555554432 123467999999999999998887 3 4599999999999999999998877 3 3467
Q ss_pred EEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853 119 FVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNP 173 (222)
Q Consensus 119 ~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~ 173 (222)
+..++..+... ....++++.--...++...+++....-....++.+.|..
T Consensus 86 ~~~~~~~~~~~-----~~~~~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~~vpCCy 135 (141)
T PF13679_consen 86 FIQGDIADESS-----SDPPDILVGLHACGDLSDRALRLFIRPNARFLVLVPCCY 135 (141)
T ss_pred hhccchhhhcc-----cCCCeEEEEeecccchHHHHHHHHHHcCCCEEEEcCCcc
Confidence 77776655432 135666766656777888888877663344555667654
No 208
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.48 E-value=8.3e-06 Score=67.51 Aligned_cols=102 Identities=19% Similarity=0.166 Sum_probs=82.0
Q ss_pred CCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853 68 SEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNN----ISNATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
.++||-+|-|.|+.+-.+.+.. .+++.+|+++..++.+++-+.... .++++++.+|..++..... .+||+|
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~---~~fDvI 153 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE---EKFDVI 153 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC---CcCCEE
Confidence 3699999999999999888865 599999999999999999987654 3569999999999987644 379999
Q ss_pred EECCCCC-C-----ccHHHHHHHHh-CCCCcEEEEeeC
Q 043853 142 ISDPNRP-G-----MHMKLIKFLLK-LKAPRIVYVSCN 172 (222)
Q Consensus 142 i~~pp~~-~-----~~~~~~~~l~~-l~~~~~v~~~~~ 172 (222)
++|.... + ...++.+.+.+ |+++|++...+.
T Consensus 154 i~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 154 IVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred EEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 9986311 2 24677777765 789998876643
No 209
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.45 E-value=1.5e-06 Score=70.78 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=78.7
Q ss_pred CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcC----CCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNN----ISNATFVQGDLNKIGGDFGNAFPKPDI 140 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~fD~ 140 (222)
+.++||=+|-|.|+.+..+.+.. .+++.+|+||..++.|++.+.... -++++++.+|+..+...... .+||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~--~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE--EKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS--T-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC--CcccE
Confidence 47899999999999999888764 599999999999999999886642 24699999999999876432 17999
Q ss_pred EEECCCCC------CccHHHHHHHHh-CCCCcEEEEee
Q 043853 141 VISDPNRP------GMHMKLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 141 ii~~pp~~------~~~~~~~~~l~~-l~~~~~v~~~~ 171 (222)
|+.|.+.. -...++.+.+++ |+++|++.+..
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99987531 134567776654 88999887654
No 210
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.45 E-value=9.1e-07 Score=74.98 Aligned_cols=106 Identities=21% Similarity=0.168 Sum_probs=66.2
Q ss_pred CCCeEEEEecccchhHHHH-hhcCCeEEEEeCCHHHHHHHHHHHHHcC-------C---CcEEEEeCchhchh--hhcCC
Q 043853 67 GSEIVLDLFCGTGTIGLTL-ARWVKHVYGYEVVPQAISDACRNAKLNN-------I---SNATFVQGDLNKIG--GDFGN 133 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~l-a~~~~~v~gvD~~~~~i~~a~~n~~~~~-------~---~~v~~~~~d~~~~~--~~~~~ 133 (222)
++.+|||+|||.|+-..-. ......++|+|+++..|+.|++..+... . -...++.+|..... ..+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 5789999999999977744 4456799999999999999999983311 1 13688888875432 11222
Q ss_pred CCCCCcEEEECCC--CC----CccHHHHHHHHh-CCCCcEEEEeeC
Q 043853 134 AFPKPDIVISDPN--RP----GMHMKLIKFLLK-LKAPRIVYVSCN 172 (222)
Q Consensus 134 ~~~~fD~ii~~pp--~~----~~~~~~~~~l~~-l~~~~~v~~~~~ 172 (222)
...+||+|-+-.. +. .....++..+.. |+|||+++.++-
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2248999977653 11 112234444433 789998886663
No 211
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.44 E-value=6.2e-07 Score=69.18 Aligned_cols=105 Identities=23% Similarity=0.255 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc
Q 043853 53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF 131 (222)
Q Consensus 53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~ 131 (222)
+.+++....+.- .+++|||+|+|+|..+++.++.+ ..+++.|++|.....++-|++.|++ ++.+...|... ..
T Consensus 67 lAR~i~~~PetV--rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~~-- 140 (218)
T COG3897 67 LARYIDDHPETV--RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-SP-- 140 (218)
T ss_pred HHHHHhcCcccc--ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-CC--
Confidence 344555544333 37899999999999999888765 4899999999999999999999998 48898888866 22
Q ss_pred CCCCCCCcEEEECCC--CCCccHHHHHHHHhCCCCcEE
Q 043853 132 GNAFPKPDIVISDPN--RPGMHMKLIKFLLKLKAPRIV 167 (222)
Q Consensus 132 ~~~~~~fD~ii~~pp--~~~~~~~~~~~l~~l~~~~~v 167 (222)
..||+++..-- .......++.....+...|..
T Consensus 141 ----~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~ 174 (218)
T COG3897 141 ----PAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAA 174 (218)
T ss_pred ----cceeEEEeeceecCchHHHHHHHHHHHHHhCCCE
Confidence 47999876532 123345555555555444433
No 212
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.42 E-value=2e-07 Score=77.53 Aligned_cols=97 Identities=23% Similarity=0.248 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHH-------HHHHHHHHcCCCc--
Q 043853 46 NTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAIS-------DACRNAKLNNISN-- 116 (222)
Q Consensus 46 ~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~-------~a~~n~~~~~~~~-- 116 (222)
|..+...+.-.+.+++... +++.|.|.+.|||++.+..|..+..|+|.|||-.++. -.+.|+++.|.+.
T Consensus 189 nTSmDAeLSli~AN~Amv~--pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~f 266 (421)
T KOG2671|consen 189 NTSMDAELSLIMANQAMVK--PGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQF 266 (421)
T ss_pred CcccchhHHHHHhhhhccC--CCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchh
Confidence 3444445444444444444 4899999999999999999999999999999988876 4578888888643
Q ss_pred EEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853 117 ATFVQGDLNKIGGDFGNAFPKPDIVISDPNR 147 (222)
Q Consensus 117 v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~ 147 (222)
+.+..+|....+..- ...||.|+||||+
T Consensus 267 ldvl~~D~sn~~~rs---n~~fDaIvcDPPY 294 (421)
T KOG2671|consen 267 LDVLTADFSNPPLRS---NLKFDAIVCDPPY 294 (421)
T ss_pred hheeeecccCcchhh---cceeeEEEeCCCc
Confidence 888999987754331 2479999999995
No 213
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.41 E-value=8.8e-07 Score=65.82 Aligned_cols=58 Identities=28% Similarity=0.389 Sum_probs=50.9
Q ss_pred eEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhch
Q 043853 70 IVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127 (222)
Q Consensus 70 ~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~ 127 (222)
.++|+|||.|..++.+++.++ +++++|.+|.+++.+++|++.++.+++++++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999998887655 6999999999999999999999887788888776553
No 214
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.40 E-value=3.7e-06 Score=66.52 Aligned_cols=112 Identities=22% Similarity=0.276 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhh--cCCeEEEEeCCHHHHHHHHHHHHH-------cCC--CcEEEEeC
Q 043853 54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLAR--WVKHVYGYEVVPQAISDACRNAKL-------NNI--SNATFVQG 122 (222)
Q Consensus 54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~--~~~~v~gvD~~~~~i~~a~~n~~~-------~~~--~~v~~~~~ 122 (222)
...+.+.+++. +++.++|||||.|...+.+|. .+.+.+|||+.+...+.|+...+. .|. ..+++.++
T Consensus 31 ~~~il~~~~l~--~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 31 VSKILDELNLT--PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHhCCC--CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 34444555544 478999999999999886664 355799999999999888765433 333 24899999
Q ss_pred chhchhh--hcCCCCCCCcEEEECCCC--CCccHHHHHHHHhCCCCcEEEEee
Q 043853 123 DLNKIGG--DFGNAFPKPDIVISDPNR--PGMHMKLIKFLLKLKAPRIVYVSC 171 (222)
Q Consensus 123 d~~~~~~--~~~~~~~~fD~ii~~pp~--~~~~~~~~~~l~~l~~~~~v~~~~ 171 (222)
|..+... ... ...|+|++|--. ..+...+.+.+..++++..++ +.
T Consensus 109 dfl~~~~~~~~~---s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~II-s~ 157 (205)
T PF08123_consen 109 DFLDPDFVKDIW---SDADVVFVNNTCFDPDLNLALAELLLELKPGARII-ST 157 (205)
T ss_dssp -TTTHHHHHHHG---HC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEE-ES
T ss_pred CccccHhHhhhh---cCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEE-EC
Confidence 9866432 111 257999998541 234445555555577776665 44
No 215
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.37 E-value=2.2e-06 Score=67.82 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=88.2
Q ss_pred ceeeeecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcC-CC---CCCCeEEEEecccchhHHHHh--hcCCeEEEEeCC
Q 043853 25 NITETLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGL-RD---DGSEIVLDLFCGTGTIGLTLA--RWVKHVYGYEVV 98 (222)
Q Consensus 25 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~-~~---~~~~~vlDlg~G~G~~~~~la--~~~~~v~gvD~~ 98 (222)
.+...+|++++.--|.+|..+..+-...++..+.+++.. .+ .++-++||+|.|.-.+--.+. +.+...+|.|+|
T Consensus 32 AlL~~fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid 111 (292)
T COG3129 32 ALLAHFYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEID 111 (292)
T ss_pred HHHHHhcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccC
Confidence 566677899866445566666677777778888887642 11 245689999988766544443 346699999999
Q ss_pred HHHHHHHHHHHHHc-CCCc-EEEEeC-chhchhhhcCCCCCCCcEEEECCCC
Q 043853 99 PQAISDACRNAKLN-NISN-ATFVQG-DLNKIGGDFGNAFPKPDIVISDPNR 147 (222)
Q Consensus 99 ~~~i~~a~~n~~~~-~~~~-v~~~~~-d~~~~~~~~~~~~~~fD~ii~~pp~ 147 (222)
+.+++.|+.++..| ++++ +++... |-..+........+.||+.+||||.
T Consensus 112 ~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPF 163 (292)
T COG3129 112 SQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPF 163 (292)
T ss_pred HHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCc
Confidence 99999999999998 7765 777664 4444444444445689999999993
No 216
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.33 E-value=1.1e-06 Score=69.92 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=59.0
Q ss_pred CeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECCC-
Q 043853 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDPN- 146 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp- 146 (222)
..++|+|||+|--+..+|....+|+|+|.|+.|++.|++.....-.. ...+...+..++ .+..+..|+|++-.-
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L----~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDL----LGGEESVDLITAAQAV 110 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccc----cCCCcceeeehhhhhH
Confidence 38999999999777788888889999999999999998754221110 022333333332 223468999988652
Q ss_pred -CCCccHHHHHHHH-hCCCCc
Q 043853 147 -RPGMHMKLIKFLL-KLKAPR 165 (222)
Q Consensus 147 -~~~~~~~~~~~l~-~l~~~~ 165 (222)
+-++ +++...+. .|++.|
T Consensus 111 HWFdl-e~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 111 HWFDL-ERFYKEAYRVLRKDG 130 (261)
T ss_pred Hhhch-HHHHHHHHHHcCCCC
Confidence 3333 44444443 366554
No 217
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.31 E-value=4.6e-05 Score=62.62 Aligned_cols=104 Identities=15% Similarity=0.164 Sum_probs=74.8
Q ss_pred CCCeEEEEecccchhHHHHhhcC----CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV----KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~----~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
...+|+|+.||.|.-.+-+.... ..|.-.|.|+..++..++.++..|+++ ++|.++|+++... +..-...++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~-l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDS-LAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhH-hhccCCCCCEE
Confidence 35799999999999888554332 379999999999999999999999998 5999999988632 22222467887
Q ss_pred EECC-----CCCCccHHHHHHHHh-CCCCcEEEEee
Q 043853 142 ISDP-----NRPGMHMKLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 142 i~~p-----p~~~~~~~~~~~l~~-l~~~~~v~~~~ 171 (222)
+.+- |...+....+.-+.. +.|+|.++.+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 7653 222223333333433 78888887666
No 218
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.26 E-value=1.6e-05 Score=67.07 Aligned_cols=103 Identities=23% Similarity=0.280 Sum_probs=77.1
Q ss_pred CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHH---cC--C--CcEEEEeCchhchhhhcCCCCCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKL---NN--I--SNATFVQGDLNKIGGDFGNAFPK 137 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~---~~--~--~~v~~~~~d~~~~~~~~~~~~~~ 137 (222)
...++|=+|.|-|.-.-.+.+. ..+++-+|+||.|++.++++.-. |+ . ++++++..|+.++..+.. +.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~---~~ 365 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA---DM 365 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc---cc
Confidence 4689999999999888877764 45999999999999999966533 22 2 359999999999987633 58
Q ss_pred CcEEEECCCCCC-------ccHHHHHHHHh-CCCCcEEEEeeC
Q 043853 138 PDIVISDPNRPG-------MHMKLIKFLLK-LKAPRIVYVSCN 172 (222)
Q Consensus 138 fD~ii~~pp~~~-------~~~~~~~~l~~-l~~~~~v~~~~~ 172 (222)
||++|.|.|.+. +..++-..+++ +++.|++.+...
T Consensus 366 fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred ccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 999999876221 23445555544 788888877664
No 219
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=98.26 E-value=4.1e-06 Score=69.42 Aligned_cols=91 Identities=23% Similarity=0.287 Sum_probs=66.4
Q ss_pred eEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC
Q 043853 70 IVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP 148 (222)
Q Consensus 70 ~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~ 148 (222)
+++|++||.|+++..+.+.+ ..+.++|+++.+++..+.|... .++.+|+.++..... ...+|+++.+||..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~--~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDF--IPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhc--CCCCCEEEeCCCCh
Confidence 68999999999999887654 4788999999999999998642 256778777654310 24699999999822
Q ss_pred ----------------CccHHHHHHHHhCCCCcEEE
Q 043853 149 ----------------GMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 149 ----------------~~~~~~~~~l~~l~~~~~v~ 168 (222)
.+...+++.+..++|.-+++
T Consensus 74 ~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ 109 (275)
T cd00315 74 PFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLL 109 (275)
T ss_pred hhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEE
Confidence 13345666666677766555
No 220
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.25 E-value=3.2e-06 Score=70.03 Aligned_cols=119 Identities=20% Similarity=0.139 Sum_probs=75.2
Q ss_pred HHHHHHHH-hcCCCCCCCeEEEEecccchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-C-----cEEEEeCch
Q 043853 53 LYKLIEDC-AGLRDDGSEIVLDLFCGTGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNI-S-----NATFVQGDL 124 (222)
Q Consensus 53 ~~~~i~~~-~~~~~~~~~~vlDlg~G~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~-~-----~v~~~~~d~ 124 (222)
+-+||... ++....++..++|+|||.|+-++-.-+ +...++|+||....|+.|++..+...- . .+.++.+|.
T Consensus 102 fNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 102 FNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred hhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 34555553 233345578999999999999985544 456999999999999999988865422 1 278999987
Q ss_pred hchh-hh-cCCCCCCCcEEEECCC--CCCc-cHHHHH----HHHhCCCCcEEEEee
Q 043853 125 NKIG-GD-FGNAFPKPDIVISDPN--RPGM-HMKLIK----FLLKLKAPRIVYVSC 171 (222)
Q Consensus 125 ~~~~-~~-~~~~~~~fD~ii~~pp--~~~~-~~~~~~----~l~~l~~~~~v~~~~ 171 (222)
+.-. .. +..++.+||+|-|-.. +.-. ...+.. ....|+|||+.+-+.
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 5432 11 2223334999966542 2111 122222 233488999766443
No 221
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.23 E-value=9.1e-06 Score=69.52 Aligned_cols=85 Identities=15% Similarity=0.116 Sum_probs=71.9
Q ss_pred CCCCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCc
Q 043853 63 LRDDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPD 139 (222)
Q Consensus 63 ~~~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD 139 (222)
+.++++.+|||.++-.|+-+.++|.. -.-|+|.|.+..-++..+.|+...|+.+..+.+.|..+++..... ..||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~--~~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFP--GSFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccC--cccc
Confidence 45778999999999999988877653 348999999999999999999999999999999999887644321 2799
Q ss_pred EEEECCCCCC
Q 043853 140 IVISDPNRPG 149 (222)
Q Consensus 140 ~ii~~pp~~~ 149 (222)
-|++|.|.++
T Consensus 315 RVLLDAPCSG 324 (460)
T KOG1122|consen 315 RVLLDAPCSG 324 (460)
T ss_pred eeeecCCCCC
Confidence 9999999655
No 222
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.22 E-value=8e-05 Score=59.02 Aligned_cols=142 Identities=20% Similarity=0.160 Sum_probs=88.6
Q ss_pred CCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
.++.+||-+|+.+|+...+++.-. ..|+|+|.||...+..-.-++.. +|+-.+.+|+..... +..--+.+|+|+
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~-Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEK-YRMLVEMVDVIF 148 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGG-GTTTS--EEEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHH-hhcccccccEEE
Confidence 458999999999999999998743 49999999998776666555443 478899999976433 222225899999
Q ss_pred ECCCCCCccHHHHHHHH-hCCCCcEEEEeeC---------c-cchHhhHHHhhccCCCCccCCCeEEeEeeeeccCC-CC
Q 043853 143 SDPNRPGMHMKLIKFLL-KLKAPRIVYVSCN---------P-ATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFP-HT 210 (222)
Q Consensus 143 ~~pp~~~~~~~~~~~l~-~l~~~~~v~~~~~---------~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p-~~ 210 (222)
.|-.-++-..-+..... -|+++|.++++-. + ..+..+...|. +.+|++.+.. ++-| +.
T Consensus 149 ~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~--------~~~~~~~e~i--~LePy~~ 218 (229)
T PF01269_consen 149 QDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLK--------EEGFKPLEQI--TLEPYER 218 (229)
T ss_dssp EE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHH--------CTTCEEEEEE--E-TTTST
T ss_pred ecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHH--------HcCCChheEe--ccCCCCC
Confidence 99764432222222232 2688887775541 1 23344456664 5678877643 4556 44
Q ss_pred CceeEEEEEE
Q 043853 211 PHIECVCLLE 220 (222)
Q Consensus 211 ~~~~~v~~~~ 220 (222)
.|.-.|..+.
T Consensus 219 dH~~vv~~y~ 228 (229)
T PF01269_consen 219 DHAMVVGRYR 228 (229)
T ss_dssp TEEEEEEEE-
T ss_pred CcEEEEEEec
Confidence 5777777664
No 223
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.19 E-value=0.00012 Score=57.77 Aligned_cols=117 Identities=23% Similarity=0.260 Sum_probs=83.4
Q ss_pred CCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
+..+.|+||-.|++.+.+.+.+. .+++.|+++..++.|.+|++.+++.. +++..+|....... .+.+|++++
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~----~d~~d~ivI- 91 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL----EDEIDVIVI- 91 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc----cCCcCEEEE-
Confidence 55699999999999999988654 89999999999999999999999865 89999998655432 236898877
Q ss_pred CCCCCccHHHHHHHHh-----CCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEe
Q 043853 145 PNRPGMHMKLIKFLLK-----LKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSL 201 (222)
Q Consensus 145 pp~~~~~~~~~~~l~~-----l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 201 (222)
.|+....+..+.. ++.-..+++ .|......++..+. +++|.+..-
T Consensus 92 ---AGMGG~lI~~ILee~~~~l~~~~rlIL--QPn~~~~~LR~~L~-------~~~~~I~~E 141 (226)
T COG2384 92 ---AGMGGTLIREILEEGKEKLKGVERLIL--QPNIHTYELREWLS-------ANSYEIKAE 141 (226)
T ss_pred ---eCCcHHHHHHHHHHhhhhhcCcceEEE--CCCCCHHHHHHHHH-------hCCceeeee
Confidence 3666555554433 222122332 35555666665553 677776653
No 224
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.14 E-value=1.8e-05 Score=64.03 Aligned_cols=92 Identities=22% Similarity=0.219 Sum_probs=63.4
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC-
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP- 145 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p- 145 (222)
...++||||+|.|..+..++....+|++.|.|+.|....++. | .+++..+ ++... +.+||+|.|--
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k----g---~~vl~~~--~w~~~----~~~fDvIscLNv 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK----G---FTVLDID--DWQQT----DFKFDVISCLNV 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC----C---CeEEehh--hhhcc----CCceEEEeehhh
Confidence 357899999999999999999999999999999997777652 3 3343322 22221 24799996632
Q ss_pred -CCCCccHHHHHHHHh-CCCCcEEEEee
Q 043853 146 -NRPGMHMKLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 146 -p~~~~~~~~~~~l~~-l~~~~~v~~~~ 171 (222)
-|......+++.++. ++|+|.++++.
T Consensus 161 LDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 161 LDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 233334555665544 68888876544
No 225
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.12 E-value=2.6e-05 Score=65.15 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=62.9
Q ss_pred CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC-CCCCCcEEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN-AFPKPDIVIS 143 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~fD~ii~ 143 (222)
++..++|..+|.|+.+..+++.. .+++|+|.|+.+++.|++.++..+ .++++++++..++...+.. ..+.+|.|+.
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGILV 98 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEEE
Confidence 46799999999999999888753 599999999999999999887543 3599999999887654422 2246999988
Q ss_pred CC
Q 043853 144 DP 145 (222)
Q Consensus 144 ~p 145 (222)
|.
T Consensus 99 DL 100 (305)
T TIGR00006 99 DL 100 (305)
T ss_pred ec
Confidence 74
No 226
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.10 E-value=9.2e-05 Score=58.80 Aligned_cols=92 Identities=26% Similarity=0.228 Sum_probs=70.6
Q ss_pred CCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCC-CcEEEEC
Q 043853 68 SEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPK-PDIVISD 144 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~-fD~ii~~ 144 (222)
+.+++|+|+|.|.-++.+|-. ..+++-+|....-+...+.-.+..+++|++++++.++++... .+ ||+|.+=
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-----~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE-----KKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc-----cccCcEEEee
Confidence 589999999999999987733 337999999999999999999999999999999999998653 24 9999873
Q ss_pred CCCCCccHHHHHHHHh-CCCCcE
Q 043853 145 PNRPGMHMKLIKFLLK-LKAPRI 166 (222)
Q Consensus 145 pp~~~~~~~~~~~l~~-l~~~~~ 166 (222)
.- .....+.+.... ++++|.
T Consensus 143 Av--a~L~~l~e~~~pllk~~g~ 163 (215)
T COG0357 143 AV--ASLNVLLELCLPLLKVGGG 163 (215)
T ss_pred hc--cchHHHHHHHHHhcccCCc
Confidence 32 112344444444 455454
No 227
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.10 E-value=1.6e-05 Score=61.79 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=77.6
Q ss_pred CCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcC-------CCcEEEEeCchhchhhhcCCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNN-------ISNATFVQGDLNKIGGDFGNAFPKP 138 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~-------~~~v~~~~~d~~~~~~~~~~~~~~f 138 (222)
...+.|||||-|++.+.++...+ -++|.||--...++.++.++... ..|+.+...++..+...+-..+...
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 45799999999999999999877 79999999999999999998775 5678899999888876543332222
Q ss_pred cEE--EECCC-------CCCccHHHHHHHH-hCCCCcEEEEeeCccchHh
Q 043853 139 DIV--ISDPN-------RPGMHMKLIKFLL-KLKAPRIVYVSCNPATCAR 178 (222)
Q Consensus 139 D~i--i~~pp-------~~~~~~~~~~~l~-~l~~~~~v~~~~~~~~~~~ 178 (222)
-+. +-+|. +.-....++..+. .+..+|.+|..++......
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~ 190 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHE 190 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHH
Confidence 233 33443 2222334444443 3689999998876544433
No 228
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.09 E-value=7.3e-05 Score=58.16 Aligned_cols=99 Identities=21% Similarity=0.152 Sum_probs=73.8
Q ss_pred CCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
..+++|+|+|.|.-++.+|-.. .+++.+|.+..-+...+.-+...+++|++++++.+++.. ....||+|++=.
T Consensus 49 ~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-----~~~~fd~v~aRA 123 (184)
T PF02527_consen 49 GKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPE-----YRESFDVVTARA 123 (184)
T ss_dssp CSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTT-----TTT-EEEEEEES
T ss_pred CceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccc-----cCCCccEEEeeh
Confidence 3389999999999999777544 489999999999999999999999999999999999811 125899999843
Q ss_pred CCCCccHHHHHHHHh-CCCCcEEEEeeCc
Q 043853 146 NRPGMHMKLIKFLLK-LKAPRIVYVSCNP 173 (222)
Q Consensus 146 p~~~~~~~~~~~l~~-l~~~~~v~~~~~~ 173 (222)
- .....+.+.... ++++|.++.--.+
T Consensus 124 v--~~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 124 V--APLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp S--SSHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred h--cCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 2 223566666655 5677777665554
No 229
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=98.08 E-value=1.3e-05 Score=67.52 Aligned_cols=91 Identities=24% Similarity=0.379 Sum_probs=68.7
Q ss_pred eEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC--
Q 043853 70 IVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN-- 146 (222)
Q Consensus 70 ~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-- 146 (222)
+++|++||.|++++.+.+.+ .-+.++|+++.+++..+.|.. ....+|+.++....... .+|+++..||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~--~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK--DVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH--T-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc--cceEEEeccCCc
Confidence 69999999999999988765 478899999999999999974 78889998886542211 4999999998
Q ss_pred --------------CCCccHHHHHHHHhCCCCcEEEE
Q 043853 147 --------------RPGMHMKLIKFLLKLKAPRIVYV 169 (222)
Q Consensus 147 --------------~~~~~~~~~~~l~~l~~~~~v~~ 169 (222)
+..+...+++.+..++|.-+++-
T Consensus 73 ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~E 109 (335)
T PF00145_consen 73 GFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLE 109 (335)
T ss_dssp TTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEE
T ss_pred eEeccccccccccccchhhHHHHHHHhhccceEEEec
Confidence 33466788888888888776663
No 230
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.06 E-value=3.1e-05 Score=60.83 Aligned_cols=103 Identities=11% Similarity=-0.012 Sum_probs=72.4
Q ss_pred CeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCC----CCCCCcEE
Q 043853 69 EIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGN----AFPKPDIV 141 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~----~~~~fD~i 141 (222)
.+|||||||||-.+..+|+..+ ...-.|.++......+..+...+.+| ...+..|+.+....+.. ....||.|
T Consensus 27 ~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 27 TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 3699999999999999998766 67788999999888888888888887 45666677665333321 12479999
Q ss_pred EECC-----CCCCccHHHHHHHHhCCCCcEEEEee
Q 043853 142 ISDP-----NRPGMHMKLIKFLLKLKAPRIVYVSC 171 (222)
Q Consensus 142 i~~p-----p~~~~~~~~~~~l~~l~~~~~v~~~~ 171 (222)
++.= |+.....-+...-..|+++|.+++..
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 7742 33333222333334578999887554
No 231
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.03 E-value=2.3e-05 Score=69.99 Aligned_cols=93 Identities=25% Similarity=0.309 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC------CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchh
Q 043853 53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV------KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLN 125 (222)
Q Consensus 53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~------~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~ 125 (222)
+.+++.+++.. .+..+|+|..||+|++.+..++.. ..++|.|+++.....|+.|+-.+|++ ++....+|..
T Consensus 174 v~~liv~~l~~--~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl 251 (489)
T COG0286 174 VSELIVELLDP--EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL 251 (489)
T ss_pred HHHHHHHHcCC--CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc
Confidence 34455555543 235699999999999988665421 46999999999999999999999997 3677777765
Q ss_pred chhhhcC-CCCCCCcEEEECCCC
Q 043853 126 KIGGDFG-NAFPKPDIVISDPNR 147 (222)
Q Consensus 126 ~~~~~~~-~~~~~fD~ii~~pp~ 147 (222)
.-+.... ....+||.|++|||.
T Consensus 252 ~~~~~~~~~~~~~~D~viaNPPf 274 (489)
T COG0286 252 SNPKHDDKDDKGKFDFVIANPPF 274 (489)
T ss_pred cCCcccccCCccceeEEEeCCCC
Confidence 5443321 122579999999994
No 232
>PRK11524 putative methyltransferase; Provisional
Probab=98.01 E-value=1.6e-05 Score=66.20 Aligned_cols=46 Identities=26% Similarity=0.332 Sum_probs=42.7
Q ss_pred CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHH
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKL 111 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~ 111 (222)
.+++.|||.+||||+.+++..+.+.+.+|+|++++.++.|++.+..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 5689999999999999999999999999999999999999998753
No 233
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.99 E-value=8.6e-05 Score=60.16 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=61.2
Q ss_pred CCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
+..+|+|+|+|+|.++..+++..+ +++..|. |..++.+++ .++++++.+|+.+-. +.+|++++.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~~-------P~~D~~~l~ 165 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDPL-------PVADVYLLR 165 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTCC-------SSESEEEEE
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHhhh-------ccccceeee
Confidence 467899999999999999998765 8899998 899999988 457999999998322 138998775
Q ss_pred CCC-CCccHH---HHHHHH-hCCCC--cEEEEee
Q 043853 145 PNR-PGMHMK---LIKFLL-KLKAP--RIVYVSC 171 (222)
Q Consensus 145 pp~-~~~~~~---~~~~l~-~l~~~--~~v~~~~ 171 (222)
--- ..-..+ +++.+. .++|+ +.+++..
T Consensus 166 ~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 166 HVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp SSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 321 111223 333332 37776 6665444
No 234
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.99 E-value=1.2e-05 Score=63.98 Aligned_cols=42 Identities=26% Similarity=0.378 Sum_probs=35.8
Q ss_pred CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHH
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACR 107 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~ 107 (222)
.+++.|||.+||+|+.+++..+.+.+.+|+|+++..++.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 458999999999999999999999999999999999999975
No 235
>PRK00536 speE spermidine synthase; Provisional
Probab=97.98 E-value=0.00014 Score=59.59 Aligned_cols=97 Identities=15% Similarity=0.018 Sum_probs=70.9
Q ss_pred CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc----CCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN----NISNATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
++.++||=+|.|-|+.+..+.+...+|+-+|+|+.+++.+++.+... .-++++++.. +... ..++||+|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~---~~~~fDVI 143 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDL---DIKKYDLI 143 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhc---cCCcCCEE
Confidence 45789999999999999999887669999999999999999965442 2345777751 1111 12579999
Q ss_pred EECCCCCCccHHHHHHHHh-CCCCcEEEEeeC
Q 043853 142 ISDPNRPGMHMKLIKFLLK-LKAPRIVYVSCN 172 (222)
Q Consensus 142 i~~pp~~~~~~~~~~~l~~-l~~~~~v~~~~~ 172 (222)
|.|... .+.+.+.+++ |+++|++...+.
T Consensus 144 IvDs~~---~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 144 ICLQEP---DIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred EEcCCC---ChHHHHHHHHhcCCCcEEEECCC
Confidence 999432 2455555544 799999887664
No 236
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.97 E-value=0.00085 Score=53.93 Aligned_cols=126 Identities=17% Similarity=0.107 Sum_probs=66.5
Q ss_pred CCCeEEEEecccchhHHHHh--hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLA--RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la--~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
.+++||=+|=.- ..++++| ....+|+.+|+|+..++..++.++..|++ ++..+.|+....+... .++||++++|
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~--~~~fD~f~TD 119 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEEL--RGKFDVFFTD 119 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTT--SS-BSEEEE-
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHH--hcCCCEEEeC
Confidence 478999888543 2333444 34569999999999999999999999997 9999999977654321 1589999999
Q ss_pred CCCC--CccHHHHHHHHhCCC-CcEEEEeeCccc--hH--hhHHHhhccCCCCccCCCeEEeEeee
Q 043853 145 PNRP--GMHMKLIKFLLKLKA-PRIVYVSCNPAT--CA--RDLDYLCHGVGDQNIKGCYKLKSLQP 203 (222)
Q Consensus 145 pp~~--~~~~~~~~~l~~l~~-~~~v~~~~~~~~--~~--~~~~~l~~~~~~~~~~~~~~~~~~~~ 203 (222)
||+. ++.-=+-+.+..++. ++..|++..... .. ..++.+. +..|+-+..+.+
T Consensus 120 PPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l-------~~~gl~i~dii~ 178 (243)
T PF01861_consen 120 PPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFL-------LEMGLVITDIIP 178 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHH-------HTS--EEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHH-------HHCCcCHHHHHh
Confidence 9965 222222233444654 447777765432 22 2344333 266777777554
No 237
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.93 E-value=4.5e-05 Score=61.21 Aligned_cols=88 Identities=23% Similarity=0.226 Sum_probs=53.6
Q ss_pred HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHH---HcC-C-----CcEEEEeCchh
Q 043853 55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAK---LNN-I-----SNATFVQGDLN 125 (222)
Q Consensus 55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~---~~~-~-----~~v~~~~~d~~ 125 (222)
+.+...+.+.+....+|||..+|-|.-++.+|..+.+|+++|.||.+....+.-++ ... . .+++++++|..
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~ 142 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL 142 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence 33445555555334599999999999999888778899999999988765554332 221 1 25999999999
Q ss_pred chhhhcCCCCCCCcEEEECC
Q 043853 126 KIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 126 ~~~~~~~~~~~~fD~ii~~p 145 (222)
+++.. +.+.||+|.+||
T Consensus 143 ~~L~~---~~~s~DVVY~DP 159 (234)
T PF04445_consen 143 EYLRQ---PDNSFDVVYFDP 159 (234)
T ss_dssp CHCCC---HSS--SEEEE--
T ss_pred HHHhh---cCCCCCEEEECC
Confidence 98762 235899999998
No 238
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.91 E-value=2.6e-06 Score=60.06 Aligned_cols=96 Identities=20% Similarity=0.204 Sum_probs=40.1
Q ss_pred EEEecccchhHHHHhhcC-----CeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 72 LDLFCGTGTIGLTLARWV-----KHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 72 lDlg~G~G~~~~~la~~~-----~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
||+|+..|..++.+++.. .+++++|..+. .+.++++++..+++ ++++++++..+....+. ..++|++++|-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~--~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP--DGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH--H--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC--CCCEEEEEECC
Confidence 689999999888776532 27999999986 44555555555554 49999999988766554 24899999997
Q ss_pred CC--CCccHHHHHHHHhCCCCcEEEEe
Q 043853 146 NR--PGMHMKLIKFLLKLKAPRIVYVS 170 (222)
Q Consensus 146 p~--~~~~~~~~~~l~~l~~~~~v~~~ 170 (222)
.. ......+......+++++++++.
T Consensus 78 ~H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 DHSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 52 22223333344457888887754
No 239
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=1.5e-05 Score=69.45 Aligned_cols=102 Identities=22% Similarity=0.284 Sum_probs=82.9
Q ss_pred CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
.-+|||.-|++|.-++..|+. ..++++.|.++.+++..++|++.|++++ ++..++|+.............||+|=+
T Consensus 110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvIDL 189 (525)
T KOG1253|consen 110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVIDL 189 (525)
T ss_pred cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEec
Confidence 457999999999999988875 3489999999999999999999999887 899999998776554333358999999
Q ss_pred CCCCCCccHHHHH-HHHhCCCCcEEEEee
Q 043853 144 DPNRPGMHMKLIK-FLLKLKAPRIVYVSC 171 (222)
Q Consensus 144 ~pp~~~~~~~~~~-~l~~l~~~~~v~~~~ 171 (222)
||- |....+++ ++..+..+|+++++|
T Consensus 190 DPy--Gs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 190 DPY--GSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred CCC--CCccHHHHHHHHHhhcCCEEEEEe
Confidence 985 33345555 455678999999888
No 240
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=0.0022 Score=50.08 Aligned_cols=144 Identities=20% Similarity=0.244 Sum_probs=92.4
Q ss_pred CCCCCCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcE
Q 043853 63 LRDDGSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDI 140 (222)
Q Consensus 63 ~~~~~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ 140 (222)
.+-.++.+||=+|+-+|+...+++.-. ..++|+|.||......-..++.. +|+-.+.+|+.... .+.---+..|+
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~-~Y~~~Ve~VDv 148 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPE-KYRHLVEKVDV 148 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcH-HhhhhcccccE
Confidence 344568999999999999999988743 48999999999887776666542 36888999986543 22111146999
Q ss_pred EEECCCCCCccHHHHHHHHh-CCCCcEEEEee---------CccchHh-hHHHhhccCCCCccCCCeEEeEeeeeccCC-
Q 043853 141 VISDPNRPGMHMKLIKFLLK-LKAPRIVYVSC---------NPATCAR-DLDYLCHGVGDQNIKGCYKLKSLQPVDMFP- 208 (222)
Q Consensus 141 ii~~pp~~~~~~~~~~~l~~-l~~~~~v~~~~---------~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p- 208 (222)
|+.|-.-++-..-+..-... ++++|.++++- ++.+..+ ++..|. +++|++.+ .+++-|
T Consensus 149 iy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~--------~~~f~i~e--~~~LePy 218 (231)
T COG1889 149 IYQDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLE--------EGGFEILE--VVDLEPY 218 (231)
T ss_pred EEEecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHH--------hcCceeeE--EeccCCc
Confidence 99987533222222222222 57777554332 3444444 556664 56777766 455666
Q ss_pred CCCceeEEEEE
Q 043853 209 HTPHIECVCLL 219 (222)
Q Consensus 209 ~~~~~~~v~~~ 219 (222)
.+.|.-.+...
T Consensus 219 e~DH~~i~~~~ 229 (231)
T COG1889 219 EKDHALIVAKY 229 (231)
T ss_pred ccceEEEEEee
Confidence 45577666554
No 241
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.87 E-value=0.00012 Score=62.25 Aligned_cols=95 Identities=23% Similarity=0.424 Sum_probs=73.1
Q ss_pred CCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
..+++|++||.|++.+.+...+ .-+.++|+++.+++.-+.|... ..++..|+.+......... .+|+++..||
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~-~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKS-DVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhcccc-CCCEEEeCCC
Confidence 4689999999999999887755 5788999999999999998752 5677788877655422111 6899999998
Q ss_pred ----------------CCCccHHHHHHHHhCCCCcEEE
Q 043853 147 ----------------RPGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 147 ----------------~~~~~~~~~~~l~~l~~~~~v~ 168 (222)
|..+..++.+.+..++|.-+++
T Consensus 77 CQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P~~fv~ 114 (328)
T COG0270 77 CQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRPKFFVL 114 (328)
T ss_pred CcchhhcCcccCCcCccceeeHHHHHHHHhhCCCEEEE
Confidence 3456678888888888854444
No 242
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=9.6e-05 Score=62.45 Aligned_cols=89 Identities=24% Similarity=0.288 Sum_probs=64.6
Q ss_pred EEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC--
Q 043853 71 VLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR-- 147 (222)
Q Consensus 71 vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~-- 147 (222)
|+|++||.|++++.+.+.+. -+.++|+++.+++..+.|.. + .++.+|+.++.... ...+|+++..||.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~---~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSD---IPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhh---CCCcCEEEecCCCcc
Confidence 68999999999998877655 56789999999999998863 2 45568887765321 2368999999982
Q ss_pred --------------CCccHHHHHHHHhCCCCcEEE
Q 043853 148 --------------PGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 148 --------------~~~~~~~~~~l~~l~~~~~v~ 168 (222)
..+...+++.+..++|.-+++
T Consensus 72 fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~~~v~ 106 (315)
T TIGR00675 72 FSIAGKRKGFEDTRGTLFFEIVRILKEKKPKFFLL 106 (315)
T ss_pred cchhcccCCCCCchhhHHHHHHHHHhhcCCCEEEe
Confidence 123445666666677765544
No 243
>PRK13699 putative methylase; Provisional
Probab=97.84 E-value=6.1e-05 Score=60.63 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=42.6
Q ss_pred CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN 112 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~ 112 (222)
.+++.|||.+||+|+.+++..+.+.+.+|+|++++..+.|.+.++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 35789999999999999999888999999999999999999888653
No 244
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.84 E-value=0.00021 Score=58.76 Aligned_cols=134 Identities=13% Similarity=0.216 Sum_probs=80.8
Q ss_pred eEEEcCCccccCCHHHHHHHHHHHHH-HhcCCCCCCCeEEEEecccch----hHHHHhhcC-------CeEEEEeCCHHH
Q 043853 34 TFQISANSFFQTNTHQAEVLYKLIED-CAGLRDDGSEIVLDLFCGTGT----IGLTLARWV-------KHVYGYEVVPQA 101 (222)
Q Consensus 34 ~~~~~~~~f~~~~~~~~~~~~~~i~~-~~~~~~~~~~~vlDlg~G~G~----~~~~la~~~-------~~v~gvD~~~~~ 101 (222)
.+.++.+.||.. +...+.+.+.+.. ++.......-+|+..||+||- +++.+.+.. -+|+|+|+|..+
T Consensus 63 ~ltin~T~FFR~-~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~ 141 (268)
T COG1352 63 ALTINVTEFFRD-PEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSV 141 (268)
T ss_pred HhhhccchhccC-cHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHH
Confidence 345667788875 4444555555554 333222235699999999997 334443322 289999999999
Q ss_pred HHHHHHHHHH-----cCC------------------------CcEEEEeCchhchhhhcCCCCCCCcEEEECCC----CC
Q 043853 102 ISDACRNAKL-----NNI------------------------SNATFVQGDLNKIGGDFGNAFPKPDIVISDPN----RP 148 (222)
Q Consensus 102 i~~a~~n~~~-----~~~------------------------~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp----~~ 148 (222)
++.|+.-+-. .++ +.|.|...|+.+-.. . .+.||+|+|=-- ..
T Consensus 142 L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~---~~~fD~IfCRNVLIYFd~ 217 (268)
T COG1352 142 LEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-F---LGKFDLIFCRNVLIYFDE 217 (268)
T ss_pred HHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-c---cCCCCEEEEcceEEeeCH
Confidence 9999753321 111 125666666655432 1 147999988321 12
Q ss_pred CccHHHHHHHHh-CCCCcEEEEeeC
Q 043853 149 GMHMKLIKFLLK-LKAPRIVYVSCN 172 (222)
Q Consensus 149 ~~~~~~~~~l~~-l~~~~~v~~~~~ 172 (222)
....++++.+.. |+++|++++-.+
T Consensus 218 ~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 218 ETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEccC
Confidence 234555555543 799999996653
No 245
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.80 E-value=6.7e-05 Score=59.34 Aligned_cols=136 Identities=18% Similarity=0.112 Sum_probs=80.1
Q ss_pred CCCeEEEEecccchhHHHH-hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 67 GSEIVLDLFCGTGTIGLTL-ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~l-a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
...+.||.|||.|.++-.+ .+.+.+|--+|..+..++.|++.+...+..-.++.+..+.++.+. ..+||+|++..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~----~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE----EGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--------TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC----CCcEeEEEehH
Confidence 4679999999999999855 567889999999999999999876442222268888888887653 24899998875
Q ss_pred CCC-CccHHHHHHHHh----CCCCcEEEEeeC------------ccchHhhHHHhhccCCCCccCCCeEEeEeeeeccCC
Q 043853 146 NRP-GMHMKLIKFLLK----LKAPRIVYVSCN------------PATCARDLDYLCHGVGDQNIKGCYKLKSLQPVDMFP 208 (222)
Q Consensus 146 p~~-~~~~~~~~~l~~----l~~~~~v~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p 208 (222)
--. =...++++.+.+ |+|+|++++-.| ..+..|..+.+.+-+ -+.|+++...+...-||
T Consensus 131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF----~~AGl~~v~~~~Q~~fP 206 (218)
T PF05891_consen 131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELF----KQAGLRLVKEEKQKGFP 206 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHH----HHCT-EEEEEEE-TT--
T ss_pred hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHH----HHcCCEEEEeccccCCC
Confidence 311 012445555443 788888876553 222222222221111 16789999988888888
Q ss_pred CC
Q 043853 209 HT 210 (222)
Q Consensus 209 ~~ 210 (222)
..
T Consensus 207 ~~ 208 (218)
T PF05891_consen 207 KE 208 (218)
T ss_dssp TT
T ss_pred cc
Confidence 74
No 246
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.77 E-value=0.00067 Score=57.29 Aligned_cols=130 Identities=16% Similarity=0.163 Sum_probs=76.3
Q ss_pred CccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhh----c--CCeEEEEeCCHHHHHHHHHHHHHcC
Q 043853 40 NSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLAR----W--VKHVYGYEVVPQAISDACRNAKLNN 113 (222)
Q Consensus 40 ~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~----~--~~~v~gvD~~~~~i~~a~~n~~~~~ 113 (222)
..||+++.+ .+-+-+...+++..- +++..++|+|||+|.-+..+.. . ....+++|+|..+++.+.+++....
T Consensus 51 pEYYptr~E-~~iL~~~~~~Ia~~i-~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~ 128 (319)
T TIGR03439 51 PEYYLTNDE-IEILKKHSSDIAASI-PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN 128 (319)
T ss_pred CccCChHHH-HHHHHHHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc
Confidence 367765433 222223333333222 2466899999999997553322 2 2379999999999999999998545
Q ss_pred CCc--EEEEeCchhchhhhcCCC--CCCCcEEEEC------CCCCCccHHHHHHHHh--CCCCcEEEEeeC
Q 043853 114 ISN--ATFVQGDLNKIGGDFGNA--FPKPDIVISD------PNRPGMHMKLIKFLLK--LKAPRIVYVSCN 172 (222)
Q Consensus 114 ~~~--v~~~~~d~~~~~~~~~~~--~~~fD~ii~~------pp~~~~~~~~~~~l~~--l~~~~~v~~~~~ 172 (222)
.+. +.-+++|..+....+..+ .....+++.- .++. ....++..++. +++++.+.+..+
T Consensus 129 ~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~-ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 129 FSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRP-EAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred CCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHH-HHHHHHHHHHHhhCCCCCEEEEecC
Confidence 565 455899987764433211 1234444332 1211 12355555544 688888777553
No 247
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.0016 Score=52.16 Aligned_cols=156 Identities=21% Similarity=0.209 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhc
Q 043853 49 QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNK 126 (222)
Q Consensus 49 ~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~ 126 (222)
....+...+ +...+.. ++..+||+|+-||+|+-.+.+. +.+|+|+|.....+.+--++ .++ +.+...|+..
T Consensus 63 G~~KL~~al-e~F~l~~-k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~ 135 (245)
T COG1189 63 GGLKLEKAL-EEFELDV-KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRY 135 (245)
T ss_pred HHHHHHHHH-HhcCcCC-CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhh
Confidence 444444433 3334433 5889999999999999977765 66999999987666554332 234 5566667766
Q ss_pred hhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHh-CCCCcEEEEeeC------------------c---cchHhhHHHhh
Q 043853 127 IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK-LKAPRIVYVSCN------------------P---ATCARDLDYLC 184 (222)
Q Consensus 127 ~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~-l~~~~~v~~~~~------------------~---~~~~~~~~~l~ 184 (222)
+...... +..|++++|-..-.+ ..++..+.. +.+++.+..-.- + ......+..++
T Consensus 136 l~~~~~~--~~~d~~v~DvSFISL-~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~ 212 (245)
T COG1189 136 LTPEDFT--EKPDLIVIDVSFISL-KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFA 212 (245)
T ss_pred CCHHHcc--cCCCeEEEEeehhhH-HHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHH
Confidence 5443221 368899998764433 344444433 334333322221 1 12222233333
Q ss_pred ccCCCCccCCCeEEeEeeeeccCCCCCceeEEEEEEe
Q 043853 185 HGVGDQNIKGCYKLKSLQPVDMFPHTPHIECVCLLEL 221 (222)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~~~~ 221 (222)
. +.||++..+.+-...-....+|-...+++
T Consensus 213 ~-------~~g~~~~gl~~Spi~G~~GNiE~l~~~~k 242 (245)
T COG1189 213 K-------ELGFQVKGLIKSPIKGGKGNIEFLLLLKK 242 (245)
T ss_pred h-------hcCcEEeeeEccCccCCCCcEeeeeeeec
Confidence 2 56899988877665555556777666654
No 248
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.76 E-value=9.5e-05 Score=58.10 Aligned_cols=122 Identities=22% Similarity=0.238 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc----CCeEEEEeCCHHHHHHHHHHHHHcCC--------
Q 043853 47 THQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW----VKHVYGYEVVPQAISDACRNAKLNNI-------- 114 (222)
Q Consensus 47 ~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~----~~~v~gvD~~~~~i~~a~~n~~~~~~-------- 114 (222)
-+++.++++........ ...-+++|.+||+|++.-.++-. -..++|.|+|+.+++.|++|+.....
T Consensus 33 VRLAsEi~qR~l~~l~~--~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~ 110 (246)
T PF11599_consen 33 VRLASEIFQRALHYLEG--KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARRE 110 (246)
T ss_dssp HHHHHHHHHHHHCTSSS---S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcC--CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHH
Confidence 45565555544444322 23568999999999988765532 24899999999999999999876531
Q ss_pred ------------------------------C----cEEEEeCchhchhhhcC-CCCCCCcEEEECCCC------CC--c-
Q 043853 115 ------------------------------S----NATFVQGDLNKIGGDFG-NAFPKPDIVISDPNR------PG--M- 150 (222)
Q Consensus 115 ------------------------------~----~v~~~~~d~~~~~~~~~-~~~~~fD~ii~~pp~------~~--~- 150 (222)
. -..+.+.|+++...... ......|+|+.|.|+ .+ .
T Consensus 111 eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~ 190 (246)
T PF11599_consen 111 ELRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSG 190 (246)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---H
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCC
Confidence 1 14577778777432111 011247999999983 32 1
Q ss_pred --cHHHHHHHHh-CCCCcEEEEe
Q 043853 151 --HMKLIKFLLK-LKAPRIVYVS 170 (222)
Q Consensus 151 --~~~~~~~l~~-l~~~~~v~~~ 170 (222)
...+++.+.. +.+..++.++
T Consensus 191 ~p~~~ml~~l~~vLp~~sVV~v~ 213 (246)
T PF11599_consen 191 GPVAQMLNSLAPVLPERSVVAVS 213 (246)
T ss_dssp HHHHHHHHHHHCCS-TT-EEEEE
T ss_pred CcHHHHHHHHHhhCCCCcEEEEe
Confidence 2355555555 4455566663
No 249
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.75 E-value=0.00011 Score=62.09 Aligned_cols=70 Identities=17% Similarity=0.087 Sum_probs=54.1
Q ss_pred CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
.++.++||+||++|+++..+.+.+.+|+|||..+.. .. + ...++|+...+|...+... ...+|++++|.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~-~~----L--~~~~~V~h~~~d~fr~~p~----~~~vDwvVcDm 278 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA-QS----L--MDTGQVEHLRADGFKFRPP----RKNVDWLVCDM 278 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC-Hh----h--hCCCCEEEEeccCcccCCC----CCCCCEEEEec
Confidence 358899999999999999999888899999966422 11 1 1234699999998777542 25799999997
Q ss_pred C
Q 043853 146 N 146 (222)
Q Consensus 146 p 146 (222)
-
T Consensus 279 v 279 (357)
T PRK11760 279 V 279 (357)
T ss_pred c
Confidence 4
No 250
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.75 E-value=0.00015 Score=55.16 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=50.8
Q ss_pred EEEeCCHHHHHHHHHHHHHcC---CCcEEEEeCchhchhhhcCCCCCCCcEEEECCC---CCCccHHHHHHH-HhCCCCc
Q 043853 93 YGYEVVPQAISDACRNAKLNN---ISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN---RPGMHMKLIKFL-LKLKAPR 165 (222)
Q Consensus 93 ~gvD~~~~~i~~a~~n~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp---~~~~~~~~~~~l-~~l~~~~ 165 (222)
+|+|+|+.|++.|+++.+..+ ..+++++++|+.+++. +.+.||+|++.-- ..+. ..+++.+ +.++|+|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~----~~~~fD~v~~~~~l~~~~d~-~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF----DDCEFDAVTMGYGLRNVVDR-LRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC----CCCCeeEEEecchhhcCCCH-HHHHHHHHHHcCcCe
Confidence 489999999999988765322 3469999999988754 2347999988642 1222 3444444 4589999
Q ss_pred EEEEe
Q 043853 166 IVYVS 170 (222)
Q Consensus 166 ~v~~~ 170 (222)
.+++.
T Consensus 76 ~l~i~ 80 (160)
T PLN02232 76 RVSIL 80 (160)
T ss_pred EEEEE
Confidence 88644
No 251
>PRK10458 DNA cytosine methylase; Provisional
Probab=97.74 E-value=0.0022 Score=56.86 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=54.6
Q ss_pred CCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh-------------cCC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD-------------FGN 133 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~-------------~~~ 133 (222)
.-+++|++||.|++.+.+-..+ .-+.++|+++.+.+.-+.|... .++...+.+|+.++... +..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~ 165 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ 165 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhhhc
Confidence 4589999999999999887654 4678999999999988888531 12345556677665321 001
Q ss_pred CCCCCcEEEECCC
Q 043853 134 AFPKPDIVISDPN 146 (222)
Q Consensus 134 ~~~~fD~ii~~pp 146 (222)
..+.+|+++..||
T Consensus 166 ~~p~~DvL~gGpP 178 (467)
T PRK10458 166 HIPDHDVLLAGFP 178 (467)
T ss_pred cCCCCCEEEEcCC
Confidence 1236899999998
No 252
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.72 E-value=0.00015 Score=60.29 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=78.2
Q ss_pred eEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccch----hHHHHhhc------CCeEEEEeCCHHHHH
Q 043853 34 TFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGT----IGLTLARW------VKHVYGYEVVPQAIS 103 (222)
Q Consensus 34 ~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~----~~~~la~~------~~~v~gvD~~~~~i~ 103 (222)
.+.++.+.||... ...+.+.+.+.. . .+.-+|+..||.||- +++.+.+. ..+|+|+|+|+.+++
T Consensus 88 ~ltineT~FFRd~-~~f~~L~~~~~~----~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~ 161 (287)
T PRK10611 88 ALTTNLTAFFREA-HHFPILAEHARR----R-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLE 161 (287)
T ss_pred HhhCCCCCccCCc-HHHHHHHHHHHh----c-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHH
Confidence 3456677888764 444444443321 1 124699999999997 33333332 137999999999999
Q ss_pred HHHHHHHH-----------------------cC-------C-CcEEEEeCchhchhhhcCCCCCCCcEEEECC--C--CC
Q 043853 104 DACRNAKL-----------------------NN-------I-SNATFVQGDLNKIGGDFGNAFPKPDIVISDP--N--RP 148 (222)
Q Consensus 104 ~a~~n~~~-----------------------~~-------~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p--p--~~ 148 (222)
.|++-+-. .+ + ..|+|.+.|+.+..... .+.||+|+|-- . ..
T Consensus 162 ~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~---~~~fD~I~cRNvliyF~~ 238 (287)
T PRK10611 162 KARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAV---PGPFDAIFCRNVMIYFDK 238 (287)
T ss_pred HHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCcc---CCCcceeeHhhHHhcCCH
Confidence 99876311 01 1 13788888887632211 24799998821 1 11
Q ss_pred CccHHHHHHHHh-CCCCcEEEEee
Q 043853 149 GMHMKLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 149 ~~~~~~~~~l~~-l~~~~~v~~~~ 171 (222)
.....+++.+.. ++|+|++++..
T Consensus 239 ~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 239 TTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEeC
Confidence 223455555543 89999887654
No 253
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.64 E-value=9.2e-05 Score=58.21 Aligned_cols=127 Identities=17% Similarity=0.256 Sum_probs=65.8
Q ss_pred CccccCCHHHHHHHHHHHH-HHhc-CCCCCCCeEEEEecccch----hHHHHhh----cCC---eEEEEeCCHHHHHHHH
Q 043853 40 NSFFQTNTHQAEVLYKLIE-DCAG-LRDDGSEIVLDLFCGTGT----IGLTLAR----WVK---HVYGYEVVPQAISDAC 106 (222)
Q Consensus 40 ~~f~~~~~~~~~~~~~~i~-~~~~-~~~~~~~~vlDlg~G~G~----~~~~la~----~~~---~v~gvD~~~~~i~~a~ 106 (222)
+.||.. +...+.+.+.+. .++. ......-+|+..||++|- +++.+.+ ... +|+|+|+|+.+++.|+
T Consensus 3 T~FFRd-~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar 81 (196)
T PF01739_consen 3 TYFFRD-PEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR 81 (196)
T ss_dssp --TTTT-TTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH
T ss_pred CcccCC-HHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH
Confidence 456654 445555555555 3332 122245799999999997 3333333 122 8999999999999986
Q ss_pred HHHH--------------H-c----C----C-----CcEEEEeCchhchhhhcCCCCCCCcEEEECCC----CCCccHHH
Q 043853 107 RNAK--------------L-N----N----I-----SNATFVQGDLNKIGGDFGNAFPKPDIVISDPN----RPGMHMKL 154 (222)
Q Consensus 107 ~n~~--------------~-~----~----~-----~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp----~~~~~~~~ 154 (222)
+-+- . . + + +.|+|.+.|+.+... ..+.||+|+|--- .......+
T Consensus 82 ~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~----~~~~fD~I~CRNVlIYF~~~~~~~v 157 (196)
T PF01739_consen 82 AGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDP----PFGRFDLIFCRNVLIYFDPETQQRV 157 (196)
T ss_dssp HTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S----------EEEEEE-SSGGGS-HHHHHHH
T ss_pred hCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCc----ccCCccEEEecCEEEEeCHHHHHHH
Confidence 5320 0 0 1 0 248888888888211 2258999999432 11223455
Q ss_pred HHHHHh-CCCCcEEEEee
Q 043853 155 IKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 155 ~~~l~~-l~~~~~v~~~~ 171 (222)
++.+.. |+|+|.+++..
T Consensus 158 l~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 158 LRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp HHHHGGGEEEEEEEEE-T
T ss_pred HHHHHHHcCCCCEEEEec
Confidence 555544 78999998664
No 254
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.55 E-value=0.00016 Score=55.98 Aligned_cols=68 Identities=26% Similarity=0.310 Sum_probs=47.0
Q ss_pred CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++.++||+||+.|+++..+.+.. ..++|+|+.+. ...+++..+++|..+... .+......
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence 46899999999999999888876 59999999977 223457777877654311 11111248
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|+|++|.
T Consensus 92 ~dlv~~D~ 99 (181)
T PF01728_consen 92 FDLVLSDM 99 (181)
T ss_dssp ESEEEE--
T ss_pred cceecccc
Confidence 99999997
No 255
>PHA01634 hypothetical protein
Probab=97.51 E-value=0.00055 Score=49.47 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=53.2
Q ss_pred CCCeEEEEecccchhHHHHh-hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 67 GSEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la-~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
.+++|+|+|++.|.-++.++ +++..|+++|.++...+..++|++.+.+=+--+...+ +. +.-++||+...|=
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~e---W~----~~Y~~~Di~~iDC 100 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGE---WN----GEYEDVDIFVMDC 100 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeeccc---cc----ccCCCcceEEEEc
Confidence 47899999999999999665 4566999999999999999999998755221111222 22 1235799988764
No 256
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.45 E-value=0.003 Score=52.30 Aligned_cols=109 Identities=21% Similarity=0.169 Sum_probs=61.5
Q ss_pred CCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 68 SEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
..+|||+|||.|.-+.++... ..+++++|.|+.|++.++..++............+...-.. +....|+|++.
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~DLvi~s 109 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL----PFPPDDLVIAS 109 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc----cCCCCcEEEEe
Confidence 579999999999877666543 34899999999999999997764322111111111111001 11245998776
Q ss_pred CCCC----CccHHHHHHHHhCCCCcEEEEeeCccchHhhH
Q 043853 145 PNRP----GMHMKLIKFLLKLKAPRIVYVSCNPATCARDL 180 (222)
Q Consensus 145 pp~~----~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~ 180 (222)
---. .....+++.+-....+.+|+++-....-.+.+
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~~LVlVEpGt~~Gf~~i 149 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAPVLVLVEPGTPAGFRRI 149 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccCcEEEEcCCChHHHHHH
Confidence 4211 22344445553334446666666543333333
No 257
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.41 E-value=0.0029 Score=46.82 Aligned_cols=109 Identities=13% Similarity=0.178 Sum_probs=68.5
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECC---CCCC---------ccHHHHHH
Q 043853 91 HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDP---NRPG---------MHMKLIKF 157 (222)
Q Consensus 91 ~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~p---p~~~---------~~~~~~~~ 157 (222)
+|+|+|+.+.+++.+++.++..+..+ +++++.+-..+...... +++|.++.|. |..+ ....+...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~--~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE--GPVDAAIFNLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S----EEEEEEEESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc--CCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 58999999999999999999998865 99999988777654432 3799999985 4111 11233334
Q ss_pred HHhCCCCcEEEEeeCc-----cchHhhHHHhhccCCCCccCCCeEEeEeeeec
Q 043853 158 LLKLKAPRIVYVSCNP-----ATCARDLDYLCHGVGDQNIKGCYKLKSLQPVD 205 (222)
Q Consensus 158 l~~l~~~~~v~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 205 (222)
+..++++|++.+.+.+ ......+..++.... ...|.+......+
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~----~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLD----QKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-----TTTEEEEEEEESS
T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCC----cceEEEEEEEccC
Confidence 4558999998877743 223333444443221 4589988877765
No 258
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=97.35 E-value=0.00057 Score=56.81 Aligned_cols=117 Identities=19% Similarity=0.121 Sum_probs=79.2
Q ss_pred eecCeeEEEcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCe---EEEEecccchhHHHHhh--cCCeEEEEeCCHHHHH
Q 043853 29 TLRGLTFQISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEI---VLDLFCGTGTIGLTLAR--WVKHVYGYEVVPQAIS 103 (222)
Q Consensus 29 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~---vlDlg~G~G~~~~~la~--~~~~v~gvD~~~~~i~ 103 (222)
+.+|+...|+++...+. -+....++.|+.+++.....+..+ -+|||.|+-.+--.+.. ......++|++...+.
T Consensus 62 ~Dfgl~veiP~grLcPt-VPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~ 140 (419)
T KOG2912|consen 62 EDFGLSVEIPLGRLCPT-VPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFN 140 (419)
T ss_pred hccCceEecCccccCCC-CccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccc
Confidence 44678888888888875 456667789999988644322223 36888776665444432 2458899999999999
Q ss_pred HHHHHHHHcCCCc-EEEEeCchhch-hhh-cC-CCCCCCcEEEECCC
Q 043853 104 DACRNAKLNNISN-ATFVQGDLNKI-GGD-FG-NAFPKPDIVISDPN 146 (222)
Q Consensus 104 ~a~~n~~~~~~~~-v~~~~~d~~~~-~~~-~~-~~~~~fD~ii~~pp 146 (222)
.|++|+.+++++. +.+++.+..+. ... +. .+...||.+.||||
T Consensus 141 ~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPP 187 (419)
T KOG2912|consen 141 YAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPP 187 (419)
T ss_pred hhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCCc
Confidence 9999999999875 66665533221 111 11 11235999999998
No 259
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.28 E-value=0.0094 Score=49.25 Aligned_cols=99 Identities=18% Similarity=0.152 Sum_probs=59.1
Q ss_pred CCeEEEEecccchhHH-HHhhc---CCeEEEEeCCHHHHHHHHHHHH-HcCCCc-EEEEeCchhchhhhcCCCCCCCcEE
Q 043853 68 SEIVLDLFCGTGTIGL-TLARW---VKHVYGYEVVPQAISDACRNAK-LNNISN-ATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~-~la~~---~~~v~gvD~~~~~i~~a~~n~~-~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
..+|+=+|||.=-++. .+++. +..++++|+|+.+++.+++.++ ..++++ +.++.+|..+....+ ..||+|
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl----~~~DvV 196 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL----KEYDVV 196 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG--------SEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc----ccCCEE
Confidence 3599999999666555 66653 3479999999999999999888 456554 999999998765433 379999
Q ss_pred EECCC---CCCccHHHHHHHHh-CCCCcEEEEe
Q 043853 142 ISDPN---RPGMHMKLIKFLLK-LKAPRIVYVS 170 (222)
Q Consensus 142 i~~pp---~~~~~~~~~~~l~~-l~~~~~v~~~ 170 (222)
+...- ......++++.+.. +++|..+.+=
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 88652 22345778887755 6777766544
No 260
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.0017 Score=48.20 Aligned_cols=98 Identities=22% Similarity=0.207 Sum_probs=68.3
Q ss_pred CCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
+..+.+|+|+|-|.+.++.++.+ .+.+|+|++|..+.+++-..-..++.+ ..|..-|+..+... +=++-+||.-
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~----dy~~vviFga 147 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR----DYRNVVIFGA 147 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc----ccceEEEeeh
Confidence 35689999999999999988866 589999999999999998887778765 88999998776432 0122233333
Q ss_pred CCCCCccHHHHHHHHh-CCCCcEEEEeeC
Q 043853 145 PNRPGMHMKLIKFLLK-LKAPRIVYVSCN 172 (222)
Q Consensus 145 pp~~~~~~~~~~~l~~-l~~~~~v~~~~~ 172 (222)
+ .+.+.+.+.++. +..+. -+++|.
T Consensus 148 e---s~m~dLe~KL~~E~p~nt-~vvacR 172 (199)
T KOG4058|consen 148 E---SVMPDLEDKLRTELPANT-RVVACR 172 (199)
T ss_pred H---HHHhhhHHHHHhhCcCCC-eEEEEe
Confidence 2 334555566653 44333 334553
No 261
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.23 E-value=0.001 Score=58.58 Aligned_cols=132 Identities=16% Similarity=0.158 Sum_probs=74.9
Q ss_pred eeecCeeEEEcCC--ccccCCHHHHHHHHHHHHHHhcC--CCCCCCeEEEEecccchhHHHHhhcCCeEEEE---eCCHH
Q 043853 28 ETLRGLTFQISAN--SFFQTNTHQAEVLYKLIEDCAGL--RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGY---EVVPQ 100 (222)
Q Consensus 28 ~~~~~~~~~~~~~--~f~~~~~~~~~~~~~~i~~~~~~--~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gv---D~~~~ 100 (222)
....|..|.|+-+ .|.. .+...++.+.+.+.. ....-..+||+|||+|+|+..+...+-.+.++ |..+.
T Consensus 78 v~~~gd~~~FPgggt~F~~----Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~ 153 (506)
T PF03141_consen 78 VRVEGDKFRFPGGGTMFPH----GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA 153 (506)
T ss_pred eeecCCEEEeCCCCccccC----CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence 3345667777754 3332 344455666666654 33334679999999999999988765543333 55566
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCc--hhchhhhcCCCCCCCcEEEECC---CCCCc-cHHHHHHHHhCCCCcEEEEeeCcc
Q 043853 101 AISDACRNAKLNNISNATFVQGD--LNKIGGDFGNAFPKPDIVISDP---NRPGM-HMKLIKFLLKLKAPRIVYVSCNPA 174 (222)
Q Consensus 101 ~i~~a~~n~~~~~~~~v~~~~~d--~~~~~~~~~~~~~~fD~ii~~p---p~~~~-~~~~~~~l~~l~~~~~v~~~~~~~ 174 (222)
.++.|.+. |++ ...+- ...++. +.+.||+|=|.- |+... ..-+.+.=+.|+|||+.+.|..|.
T Consensus 154 qvqfaleR----Gvp---a~~~~~~s~rLPf----p~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 154 QVQFALER----GVP---AMIGVLGSQRLPF----PSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred hhhhhhhc----Ccc---hhhhhhccccccC----CccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence 66666542 443 22222 122322 345899984432 22111 123333334479999988887653
No 262
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.22 E-value=0.00056 Score=57.29 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=56.6
Q ss_pred CCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC--CCCCCcEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN--AFPKPDIVI 142 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~--~~~~fD~ii 142 (222)
++..++|..-|.|+.+.++.+. ..+++|+|.||.+++.|++++... -+++.+++++..++...+.. ....+|.|+
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL 98 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKELNGINKVDGIL 98 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHTTTTS-EEEEE
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHccCCCccCEEE
Confidence 4779999999999999988864 359999999999999999887644 23599999998877654332 224799998
Q ss_pred ECC
Q 043853 143 SDP 145 (222)
Q Consensus 143 ~~p 145 (222)
.|.
T Consensus 99 ~DL 101 (310)
T PF01795_consen 99 FDL 101 (310)
T ss_dssp EE-
T ss_pred Ecc
Confidence 875
No 263
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.21 E-value=0.0011 Score=57.32 Aligned_cols=60 Identities=22% Similarity=0.256 Sum_probs=50.7
Q ss_pred CCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhch
Q 043853 68 SEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKI 127 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~ 127 (222)
...|||+|+|||.+++.+++.+ -.++++|.=..|.+.|++.+.+||.++ ++++..-..+.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 4579999999999999777654 489999999999999999999999875 88877655554
No 264
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.014 Score=46.04 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=49.7
Q ss_pred CCCeEEEEecccchhHHHHhhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh--hcCC--CCCCCc
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG--DFGN--AFPKPD 139 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~---~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~~--~~~~fD 139 (222)
++..|+||||-.|+++..+++... .|+|+|+.|.-. .++|.++++|+++-.. .+.. ...++|
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 589999999999999998887543 599999987521 3468999999855421 1110 113579
Q ss_pred EEEECCC
Q 043853 140 IVISDPN 146 (222)
Q Consensus 140 ~ii~~pp 146 (222)
+|++|+.
T Consensus 114 vV~sD~a 120 (205)
T COG0293 114 VVLSDMA 120 (205)
T ss_pred eEEecCC
Confidence 9999974
No 265
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.14 E-value=0.0048 Score=51.18 Aligned_cols=88 Identities=19% Similarity=0.222 Sum_probs=66.4
Q ss_pred HHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc
Q 043853 55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF 131 (222)
Q Consensus 55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~ 131 (222)
+-+.+.+... ++...+|..-|.|+.+-.+.... ..++|+|.||.+++.|++....++ +++.+++++..++...+
T Consensus 13 ~E~i~~L~~~--~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 13 NEVVELLAPK--PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEAL 89 (314)
T ss_pred HHHHHhcccC--CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHH
Confidence 3344444433 36899999999999999887654 479999999999999999998766 46999999987776543
Q ss_pred CCC-CCCCcEEEECC
Q 043853 132 GNA-FPKPDIVISDP 145 (222)
Q Consensus 132 ~~~-~~~fD~ii~~p 145 (222)
... ...+|-|+.|.
T Consensus 90 ~~~~i~~vDGiL~DL 104 (314)
T COG0275 90 KELGIGKVDGILLDL 104 (314)
T ss_pred HhcCCCceeEEEEec
Confidence 321 24678887653
No 266
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.0013 Score=49.62 Aligned_cols=125 Identities=14% Similarity=0.089 Sum_probs=74.6
Q ss_pred CCeEEEEecc-cchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHHHHcCCC---cEEEEeCchhchhhhcCCCCCCCcEE
Q 043853 68 SEIVLDLFCG-TGTIGLTLARWVK--HVYGYEVVPQAISDACRNAKLNNIS---NATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 68 ~~~vlDlg~G-~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~~~~~~~---~v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
+.+|+|+|.| +|.-++.+|...+ .|.-.|-+.+.++..++....|..+ .+.+...+...-.... ....||+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~--eq~tFDiI 107 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ--EQHTFDII 107 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH--hhCcccEE
Confidence 5789999999 6666667776544 8999999999999999888776433 3433333332221111 22489999
Q ss_pred EECC--CCCCccHHHHHHHHh-CCCCcEEEEee--CccchHhhHHHhhccCCCCccCCCeEEeEee
Q 043853 142 ISDP--NRPGMHMKLIKFLLK-LKAPRIVYVSC--NPATCARDLDYLCHGVGDQNIKGCYKLKSLQ 202 (222)
Q Consensus 142 i~~p--p~~~~~~~~~~~l~~-l~~~~~v~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 202 (222)
++.- ........+.+.|.. ++|.|...+.+ ...+......... +.||.+.-..
T Consensus 108 laADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~--------~~gf~v~l~e 165 (201)
T KOG3201|consen 108 LAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVG--------TVGFTVCLEE 165 (201)
T ss_pred EeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHH--------hceeEEEecc
Confidence 8853 123344556666655 57766554444 2334444443332 4456555443
No 267
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=97.01 E-value=0.064 Score=48.34 Aligned_cols=79 Identities=23% Similarity=0.298 Sum_probs=56.1
Q ss_pred CCCeEEEEecccchhHHHHhhc------CCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchhhhcCCCCCCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW------VKHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIGGDFGNAFPKP 138 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~------~~~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~f 138 (222)
++..+.|+.||+|++.+...+. ...++|.+..+.+...++.|+..++.. ......+|...-+.. . ...+|
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~-~-~~~~~ 294 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEW-E-NENGF 294 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccc-c-ccccC
Confidence 4578999999999998854431 136999999999999999998877653 244545554332211 1 12469
Q ss_pred cEEEECCCC
Q 043853 139 DIVISDPNR 147 (222)
Q Consensus 139 D~ii~~pp~ 147 (222)
|++++|||.
T Consensus 295 D~v~~NpPf 303 (501)
T TIGR00497 295 EVVVSNPPY 303 (501)
T ss_pred CEEeecCCc
Confidence 999999983
No 268
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.00 E-value=0.0033 Score=50.91 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=52.3
Q ss_pred CCCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
...+|+|+|||.=-+++...... ..++|+|+|..+++....-....+.+ .++...|...-... ...|+.+.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~-~~~~v~Dl~~~~~~-----~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP-HDARVRDLLSDPPK-----EPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C-EEEEEE-TTTSHTT-----SEESEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC-cceeEeeeeccCCC-----CCcchhhH
Confidence 36799999999999999665543 49999999999999999999988874 77777787665332 35788765
No 269
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.00 E-value=0.015 Score=42.08 Aligned_cols=99 Identities=28% Similarity=0.205 Sum_probs=58.8
Q ss_pred EEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 71 VLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 71 vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
++|+|||+|... .++... ..++|+|.++.++..++..... .... +.+..+|.......+.. ...||++.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFED-SASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCC-CCceeEEeeeee
Confidence 999999999976 333332 3889999999999996655533 2212 67888887652111110 026899844332
Q ss_pred CCCc-cHHHHHHH-HhCCCCcEEEEeeC
Q 043853 147 RPGM-HMKLIKFL-LKLKAPRIVYVSCN 172 (222)
Q Consensus 147 ~~~~-~~~~~~~l-~~l~~~~~v~~~~~ 172 (222)
.... .......+ ..+++++.+++...
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 129 LHLLPPAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hhcCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 1111 23344443 44678777765553
No 270
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.99 E-value=0.0028 Score=50.54 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=65.7
Q ss_pred CCeEEEEecccchhHHHHh-hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA-RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la-~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
.+.++|+|||.|.+.-.+. +...+++-+|.|-.|++.++.. +.+++ .+....+|-+.++.. .+.+|+|+++..
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~----ens~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFK----ENSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhccccc----ccchhhhhhhhh
Confidence 5689999999999998765 4567999999999999998763 22223 256667776655532 258999988764
Q ss_pred --C-CCccHHHHHHHHhCCCCcEEE
Q 043853 147 --R-PGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 147 --~-~~~~~~~~~~l~~l~~~~~v~ 168 (222)
+ ..+...+++.-..++|.+..+
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fi 171 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFI 171 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccch
Confidence 2 234444444444567777655
No 271
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.97 E-value=0.0062 Score=48.03 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=59.0
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
+...|.|+|||.+.++..+. ..-+|+..|+-+. +-.++.+|+...+.. ++..|++++...
T Consensus 72 ~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~---------------n~~Vtacdia~vPL~----~~svDv~VfcLS 131 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP---------------NPRVTACDIANVPLE----DESVDVAVFCLS 131 (219)
T ss_dssp TTS-EEEES-TT-HHHHH---S---EEEEESS-S---------------STTEEES-TTS-S------TT-EEEEEEES-
T ss_pred CCEEEEECCCchHHHHHhcc-cCceEEEeeccCC---------------CCCEEEecCccCcCC----CCceeEEEEEhh
Confidence 35799999999999996654 2347999998742 124677888776642 357999988775
Q ss_pred --CCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEee
Q 043853 147 --RPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQ 202 (222)
Q Consensus 147 --~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 202 (222)
-.++..-+.++.+-|+++|.+++..-... ..+.+.|.+.+. ..||++....
T Consensus 132 LMGTn~~~fi~EA~RvLK~~G~L~IAEV~SR-f~~~~~F~~~~~----~~GF~~~~~d 184 (219)
T PF05148_consen 132 LMGTNWPDFIREANRVLKPGGILKIAEVKSR-FENVKQFIKALK----KLGFKLKSKD 184 (219)
T ss_dssp --SS-HHHHHHHHHHHEEEEEEEEEEEEGGG--S-HHHHHHHHH----CTTEEEEEEE
T ss_pred hhCCCcHHHHHHHHheeccCcEEEEEEeccc-CcCHHHHHHHHH----HCCCeEEecc
Confidence 22333444445555899999886652211 113332222111 4578777643
No 272
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.97 E-value=0.0033 Score=50.99 Aligned_cols=82 Identities=17% Similarity=0.246 Sum_probs=58.2
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
....|.|+|||-+-++. ....+|++.|+-+. +-+++.+|+...+.. ++..|++++...
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~----d~svDvaV~CLS 237 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVAV---------------NERVIACDMRNVPLE----DESVDVAVFCLS 237 (325)
T ss_pred CceEEEecccchhhhhh---ccccceeeeeeecC---------------CCceeeccccCCcCc----cCcccEEEeeHh
Confidence 46789999999998876 33458999998632 357888898886653 458999988765
Q ss_pred C--CCccHHHHHH-HHhCCCCcEEEEee
Q 043853 147 R--PGMHMKLIKF-LLKLKAPRIVYVSC 171 (222)
Q Consensus 147 ~--~~~~~~~~~~-l~~l~~~~~v~~~~ 171 (222)
. .++ ..++.. -+-|+++|.+|+..
T Consensus 238 LMgtn~-~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 238 LMGTNL-ADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred hhcccH-HHHHHHHHHHhccCceEEEEe
Confidence 2 233 334443 34489999999775
No 273
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.78 E-value=0.0016 Score=45.61 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=42.9
Q ss_pred EcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCH
Q 043853 37 ISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVP 99 (222)
Q Consensus 37 ~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~ 99 (222)
.+|..+.......+..++.+....... .+...++|+|||.|.+..-|...+-+-.|+|.-.
T Consensus 30 TdP~K~VfEDlaIAAyLi~LW~~~~~~--~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 30 TDPQKHVFEDLAIAAYLIELWRDMYGE--QKFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CCchhhHHHHHHHHHHHHHHHhcccCC--CCCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 455555555555666666655554332 2356899999999999998888787888998753
No 274
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.023 Score=48.40 Aligned_cols=81 Identities=19% Similarity=0.133 Sum_probs=61.7
Q ss_pred CCCCeEEEEecccchhHHHHhhcC------CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc-----CCC
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWV------KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF-----GNA 134 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~------~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~-----~~~ 134 (222)
.++.+|||+++-.|+-++.+.+.. +.+++-|.++.-+....+.++....+++.+...|+..++... ...
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 468999999999999988665531 289999999999999988886666556777777776665432 112
Q ss_pred CCCCcEEEECCC
Q 043853 135 FPKPDIVISDPN 146 (222)
Q Consensus 135 ~~~fD~ii~~pp 146 (222)
...||-|++|-|
T Consensus 234 ~~~fDrVLvDVP 245 (375)
T KOG2198|consen 234 QLKFDRVLVDVP 245 (375)
T ss_pred hhhcceeEEecc
Confidence 247999999988
No 275
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.60 E-value=0.011 Score=48.49 Aligned_cols=104 Identities=15% Similarity=0.059 Sum_probs=70.7
Q ss_pred CCCeEEEEecccchhHHHHhh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLAR--WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~--~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
.++.|+=+| ---..+++++. ...++..+|++...++...+.++..|+.|++.+.-|+....+.-.. .+||+++.|
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~--~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLK--RKFDVFITD 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHH--hhCCeeecC
Confidence 356677777 44455565554 4559999999999999999999999998899999999776543221 489999999
Q ss_pred CCCC--CccHHHHHHHHhCCCC---cEEEEeeCc
Q 043853 145 PNRP--GMHMKLIKFLLKLKAP---RIVYVSCNP 173 (222)
Q Consensus 145 pp~~--~~~~~~~~~l~~l~~~---~~v~~~~~~ 173 (222)
||.. ++..-+-+-+..|+.. |+.+++...
T Consensus 229 PpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~re 262 (354)
T COG1568 229 PPETIKALKLFLGRGIATLKGEGCAGYFGITRRE 262 (354)
T ss_pred chhhHHHHHHHHhccHHHhcCCCccceEeeeecc
Confidence 9943 1111111123335543 666666643
No 276
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.43 E-value=0.05 Score=41.61 Aligned_cols=128 Identities=18% Similarity=0.137 Sum_probs=75.3
Q ss_pred EecccchhHHHHhhcC---CeEEEE--eCCHHHHHH---HHHHHHHcCCCcEEE-EeCchhchhhhcCCCCCCCcEEEEC
Q 043853 74 LFCGTGTIGLTLARWV---KHVYGY--EVVPQAISD---ACRNAKLNNISNATF-VQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 74 lg~G~G~~~~~la~~~---~~v~gv--D~~~~~i~~---a~~n~~~~~~~~v~~-~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
+|=|.=.+++++++.. .++++. |...+..+. +..|+....-.++.+ ...|+.++..........||.|+.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 4445555666777643 266655 444444333 346666653334444 4458888876653344689999999
Q ss_pred CCCCC---------------ccHHHHHHHHh-CCCCcEEEEeeCccc--hHhhHHHhhccCCCCccCCCeEEeEeeeec-
Q 043853 145 PNRPG---------------MHMKLIKFLLK-LKAPRIVYVSCNPAT--CARDLDYLCHGVGDQNIKGCYKLKSLQPVD- 205 (222)
Q Consensus 145 pp~~~---------------~~~~~~~~l~~-l~~~~~v~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 205 (222)
.|..+ +...+...... +.++|.+.++-.... ...++..+++ ..|+.+....+++
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~-------~~gl~l~~~~~F~~ 155 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAA-------EAGLVLVRKVPFDP 155 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHH-------hcCCEEEEEecCCH
Confidence 99665 11122222222 677777776664322 3456677765 7799999988876
Q ss_pred -cCC
Q 043853 206 -MFP 208 (222)
Q Consensus 206 -~~p 208 (222)
.||
T Consensus 156 ~~yp 159 (166)
T PF10354_consen 156 SDYP 159 (166)
T ss_pred HHCC
Confidence 355
No 277
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.39 E-value=0.035 Score=44.77 Aligned_cols=102 Identities=20% Similarity=0.171 Sum_probs=61.2
Q ss_pred CCCCeEEEEecccchhHHHHhhcC-C--eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWV-K--HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~-~--~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
.++.+||=||+++|+...+.+.-. + -|+++|.|+..=.....-++ +-+|+-.+..|+.-.. .+.---...|+||
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk--kRtNiiPIiEDArhP~-KYRmlVgmVDvIF 231 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK--KRTNIIPIIEDARHPA-KYRMLVGMVDVIF 231 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh--ccCCceeeeccCCCch-heeeeeeeEEEEe
Confidence 458999999999999888887742 2 79999998654333322111 1247777778875432 1110113689999
Q ss_pred ECCCCCCccHHHHH--HHHhCCCCcEEEEee
Q 043853 143 SDPNRPGMHMKLIK--FLLKLKAPRIVYVSC 171 (222)
Q Consensus 143 ~~pp~~~~~~~~~~--~l~~l~~~~~v~~~~ 171 (222)
+|.+.++. ..++. +-.-|++++.+.++.
T Consensus 232 aDvaqpdq-~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 232 ADVAQPDQ-ARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ccCCCchh-hhhhhhhhhhhhccCCeEEEEE
Confidence 99764332 12111 111267777665444
No 278
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=96.33 E-value=0.18 Score=39.98 Aligned_cols=112 Identities=17% Similarity=0.217 Sum_probs=73.7
Q ss_pred HHHHHHhcCCCCCCCeEEEEecccch--hHHHH--hh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCch-hc
Q 043853 55 KLIEDCAGLRDDGSEIVLDLFCGTGT--IGLTL--AR--WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDL-NK 126 (222)
Q Consensus 55 ~~i~~~~~~~~~~~~~vlDlg~G~G~--~~~~l--a~--~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~-~~ 126 (222)
++|..++. +-+.+.+++..|+.|. .+++| |. -+.++++|.-++......++.+...+.++ ++|+.++. .+
T Consensus 31 EfISAlAA--G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~ 108 (218)
T PF07279_consen 31 EFISALAA--GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEE 108 (218)
T ss_pred HHHHHHhc--cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHH
Confidence 44444432 2246789999877543 33433 32 25699999999888888888888888766 79999984 55
Q ss_pred hhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853 127 IGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSCNP 173 (222)
Q Consensus 127 ~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~ 173 (222)
....+ ...|+++.|--..+...++++.++ +.+.|-+.+..|.
T Consensus 109 ~~~~~----~~iDF~vVDc~~~d~~~~vl~~~~-~~~~GaVVV~~Na 150 (218)
T PF07279_consen 109 VMPGL----KGIDFVVVDCKREDFAARVLRAAK-LSPRGAVVVCYNA 150 (218)
T ss_pred HHhhc----cCCCEEEEeCCchhHHHHHHHHhc-cCCCceEEEEecc
Confidence 55544 368999998654444335555543 5667777766654
No 279
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.22 E-value=0.032 Score=39.52 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=63.3
Q ss_pred cccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCcc
Q 043853 76 CGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMH 151 (222)
Q Consensus 76 ~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~ 151 (222)
||.|.++..+++ .+.+++.+|.+++.++.+++. .+.++.+|..+...-........+.+++..+.....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------GVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------TSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------ccccccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 677777776654 234899999999998888753 367999999776422222234688887776544333
Q ss_pred HHHHHHHHhCCCCcEEEEeeCccchHhhHHH
Q 043853 152 MKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182 (222)
Q Consensus 152 ~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~ 182 (222)
..+...++.+.+...++...+.......++.
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~ 107 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVNDPENAELLRQ 107 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCeEEEEECCHHHHHHHHH
Confidence 4445556667777777766666444444443
No 280
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.16 E-value=0.088 Score=43.12 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=64.6
Q ss_pred HHHHHHhcCCCCCCCeEEEEecccchhHH-HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-------------------
Q 043853 55 KLIEDCAGLRDDGSEIVLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDACRNAKLNNI------------------- 114 (222)
Q Consensus 55 ~~i~~~~~~~~~~~~~vlDlg~G~G~~~~-~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~------------------- 114 (222)
+.+.+........+.++||+|||.-..-+ .+.+...+|+..|..+..++..++.++.-+.
T Consensus 44 ~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~ 123 (256)
T PF01234_consen 44 KNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREK 123 (256)
T ss_dssp HHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSG
T ss_pred HHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcch
Confidence 33434333333357799999999866544 4445677999999999999888777654331
Q ss_pred ---------CcE-EEEeCchhchhhhcC-CCC-CCCcEEEECCC------CCCccHHHHHHH-HhCCCCcEEEEee
Q 043853 115 ---------SNA-TFVQGDLNKIGGDFG-NAF-PKPDIVISDPN------RPGMHMKLIKFL-LKLKAPRIVYVSC 171 (222)
Q Consensus 115 ---------~~v-~~~~~d~~~~~~~~~-~~~-~~fD~ii~~pp------~~~~~~~~~~~l-~~l~~~~~v~~~~ 171 (222)
..| +++..|+.+...-.. ... .+||+|++..- ........++.+ ..++|||.+++..
T Consensus 124 ~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 124 WEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 013 477778866542211 011 25999977642 111222333333 3378998876544
No 281
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.01 E-value=0.074 Score=43.26 Aligned_cols=104 Identities=18% Similarity=0.145 Sum_probs=60.3
Q ss_pred CCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcC-----CC-cEEEEeCchhchhhhcCCCCCC-Cc
Q 043853 68 SEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNN-----IS-NATFVQGDLNKIGGDFGNAFPK-PD 139 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~-----~~-~v~~~~~d~~~~~~~~~~~~~~-fD 139 (222)
..+||++|+|+|..++.+|.. ..++.-.|. +..+...+.|...++ .. .+.+...++......-... +. +|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~-~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRL-PNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhcc-CCccc
Confidence 567999999999999988874 557777776 455555555544332 22 2444444443332111111 23 89
Q ss_pred EEEECCC--CCCccHHHHHHHHh-CCCCcEEEEeeCc
Q 043853 140 IVISDPN--RPGMHMKLIKFLLK-LKAPRIVYVSCNP 173 (222)
Q Consensus 140 ~ii~~pp--~~~~~~~~~~~l~~-l~~~~~v~~~~~~ 173 (222)
+|+..-+ .......+...+.. +..++++++...-
T Consensus 165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEec
Confidence 9877543 23445666666655 3444477766643
No 282
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.00 E-value=0.13 Score=42.18 Aligned_cols=104 Identities=15% Similarity=0.052 Sum_probs=56.9
Q ss_pred CCeEEEEeccc--chhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC--------C
Q 043853 68 SEIVLDLFCGT--GTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN--------A 134 (222)
Q Consensus 68 ~~~vlDlg~G~--G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~--------~ 134 (222)
-..+||+|||. -...-.+|+. ..+|+-+|.+|..+..++..+..+.-....++++|+.+...-+.. .
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 46899999993 3455566654 348999999999999999888655322389999999776432221 1
Q ss_pred CCCCcEEEECC----CCCCccHHHHHHHHh-CCCCcEEEEee
Q 043853 135 FPKPDIVISDP----NRPGMHMKLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 135 ~~~fD~ii~~p----p~~~~~~~~~~~l~~-l~~~~~v~~~~ 171 (222)
..+.-+++... |...-...++..+.. +.+|..+.++-
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 11222333321 222334566666655 78898887765
No 283
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.87 E-value=0.032 Score=48.05 Aligned_cols=100 Identities=22% Similarity=0.135 Sum_probs=70.8
Q ss_pred CCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
++..++|+|||.|.....++.. ..+++|++.++..+..+........+++ ..+...|....+.. ++.||.+-+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fe----dn~fd~v~~l 185 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFE----DNTFDGVRFL 185 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCC----ccccCcEEEE
Confidence 4668999999999999988875 4699999999998888888777777765 56677777666542 3578887543
Q ss_pred CC---CCCccHHHHHHHHhCCCCcEEEEe
Q 043853 145 PN---RPGMHMKLIKFLLKLKAPRIVYVS 170 (222)
Q Consensus 145 pp---~~~~~~~~~~~l~~l~~~~~v~~~ 170 (222)
-- .........+..+.++|+|+....
T Consensus 186 d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 186 EVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred eecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 21 122333444444557888876643
No 284
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.68 E-value=0.045 Score=45.54 Aligned_cols=47 Identities=28% Similarity=0.441 Sum_probs=43.0
Q ss_pred CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLN 112 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~ 112 (222)
.++..|+|.++|+|..+++..+.+...+|+|++++.++.+.+.+...
T Consensus 221 ~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 221 FPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 35899999999999999999888999999999999999999988754
No 285
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=95.44 E-value=0.82 Score=37.15 Aligned_cols=87 Identities=15% Similarity=0.087 Sum_probs=65.7
Q ss_pred EEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC--C
Q 043853 72 LDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP--G 149 (222)
Q Consensus 72 lDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~--~ 149 (222)
|..+|||=.++-.+.+..-++.++|+.|.-....+.|+. +..++++.++|..........+.++=-+|++|||.. +
T Consensus 93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~ 170 (279)
T COG2961 93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKD 170 (279)
T ss_pred cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCccccc
Confidence 899999998888887766799999999999999999987 445699999998776543333334567899999943 3
Q ss_pred ccHHHHHHHHh
Q 043853 150 MHMKLIKFLLK 160 (222)
Q Consensus 150 ~~~~~~~~l~~ 160 (222)
-...+.+.+..
T Consensus 171 eY~rvv~~l~~ 181 (279)
T COG2961 171 EYQRVVEALAE 181 (279)
T ss_pred HHHHHHHHHHH
Confidence 34555555543
No 286
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.35 E-value=0.12 Score=42.88 Aligned_cols=106 Identities=16% Similarity=0.132 Sum_probs=77.0
Q ss_pred CCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHc--CC--CcEEEEeCchhchhhhcCCCCCCC
Q 043853 65 DDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLN--NI--SNATFVQGDLNKIGGDFGNAFPKP 138 (222)
Q Consensus 65 ~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~--~~--~~v~~~~~d~~~~~~~~~~~~~~f 138 (222)
.++.++++=+|-|-|++.-..+++ ..++.-+|++...++..++-.... +. +++.++-||...+..... .++|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~--~~~~ 196 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK--ENPF 196 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc--cCCc
Confidence 346789999999999998866665 348999999999999998888765 33 359999999999887653 2589
Q ss_pred cEEEECCCC------CCccHHHHH-HHHhCCCCcEEEEeeC
Q 043853 139 DIVISDPNR------PGMHMKLIK-FLLKLKAPRIVYVSCN 172 (222)
Q Consensus 139 D~ii~~pp~------~~~~~~~~~-~l~~l~~~~~v~~~~~ 172 (222)
|+|+.+... .-....... .+.++++++++.....
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 999987631 111223333 3345889998876553
No 287
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.18 E-value=0.35 Score=38.49 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=71.8
Q ss_pred CCCeEEEEecccchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
++.+||++|=|.|.....+.+..+ +-+-||.+|..++..+++.-... +||.+..+-+.+...++.. +.||-|+.|-
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~~L~d--~~FDGI~yDT 177 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLNTLPD--KHFDGIYYDT 177 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhccccc--cCcceeEeec
Confidence 478999999999999988877654 55667999999999888764322 3699999999888877653 4699999985
Q ss_pred C--CCCccHHHHHHHHh-CCCCcEEEEeeC
Q 043853 146 N--RPGMHMKLIKFLLK-LKAPRIVYVSCN 172 (222)
Q Consensus 146 p--~~~~~~~~~~~l~~-l~~~~~v~~~~~ 172 (222)
- ...-...+.+.+-+ ++|+|+ +.-||
T Consensus 178 y~e~yEdl~~~hqh~~rLLkP~gv-~SyfN 206 (271)
T KOG1709|consen 178 YSELYEDLRHFHQHVVRLLKPEGV-FSYFN 206 (271)
T ss_pred hhhHHHHHHHHHHHHhhhcCCCce-EEEec
Confidence 3 11112333333333 688864 43444
No 288
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=95.08 E-value=0.043 Score=44.66 Aligned_cols=57 Identities=23% Similarity=0.148 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHH
Q 043853 53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKL 111 (222)
Q Consensus 53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~ 111 (222)
++.+|.+.+... +..+++|++||+|.+++.+...+..++.-|+++..+...+..++.
T Consensus 8 l~~~I~~~ip~~--~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 8 LAKWIIELIPKN--KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp GHHHHHHHS-S---S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHHhc
Confidence 455666665321 478999999999999998877778999999999888777644443
No 289
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.07 E-value=0.14 Score=44.07 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHH
Q 043853 51 EVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAK 110 (222)
Q Consensus 51 ~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~ 110 (222)
+++.+.+.......+ -+.++|+|+|.|.++..++-+ +-.|.|||.|....+.|++.-+
T Consensus 139 ~~lselvSsi~~f~g--i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rLdk 197 (476)
T KOG2651|consen 139 RRLSELVSSISDFTG--IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRLDK 197 (476)
T ss_pred HHHHHHHHHHHhhcC--CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHHHH
Confidence 334444444433333 678999999999999988865 4599999999888877765543
No 290
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.07 E-value=0.19 Score=39.78 Aligned_cols=101 Identities=15% Similarity=0.139 Sum_probs=50.4
Q ss_pred CCeEEEEecccchhHHHHhh---c---CCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhhhc----CCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLAR---W---VKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGGDF----GNAFP 136 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~---~---~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~----~~~~~ 136 (222)
.+.|+|+|.-.|+-++..|. . ..+|+|+|++.......... .+.. +++++++||..+...-. .....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e--~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE--SHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG--G----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh--hccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 57999999999998886653 2 25999999964433222111 1111 46999999986553211 11113
Q ss_pred CCcEEEECCCC--CCccHHHHHHHHh-CCCCcEEEEee
Q 043853 137 KPDIVISDPNR--PGMHMKLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 137 ~fD~ii~~pp~--~~~~~~~~~~l~~-l~~~~~v~~~~ 171 (222)
...+|+.|... ... ...++.+.. +.+|+.+++..
T Consensus 111 ~~vlVilDs~H~~~hv-l~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 111 HPVLVILDSSHTHEHV-LAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SSEEEEESS----SSH-HHHHHHHHHT--TT-EEEETS
T ss_pred CceEEEECCCccHHHH-HHHHHHhCccCCCCCEEEEEe
Confidence 46688888752 222 233333433 57777776553
No 291
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.05 E-value=0.14 Score=43.45 Aligned_cols=93 Identities=18% Similarity=0.133 Sum_probs=64.0
Q ss_pred CCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC-
Q 043853 68 SEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN- 146 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp- 146 (222)
-...+|+|.|.|..+-.+....+++-+++.+...+..++.++. .| |+.+-+|...-. ++-|+|+.-.-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~~-------P~~daI~mkWiL 246 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQDT-------PKGDAIWMKWIL 246 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC---cceecccccccC-------CCcCeEEEEeec
Confidence 4789999999999999777788899999999888888877764 33 677888876642 24567765431
Q ss_pred CCCccHHHHHHHHh----CCCCcEEEEee
Q 043853 147 RPGMHMKLIKFLLK----LKAPRIVYVSC 171 (222)
Q Consensus 147 ~~~~~~~~~~~l~~----l~~~~~v~~~~ 171 (222)
...-..+..+.+++ ++|+|.+++-.
T Consensus 247 hdwtDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 247 HDWTDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred ccCChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 01113344444443 77887776544
No 292
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.85 E-value=0.04 Score=48.59 Aligned_cols=113 Identities=11% Similarity=0.025 Sum_probs=73.2
Q ss_pred CCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCC---CCCCCcEEE
Q 043853 68 SEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGN---AFPKPDIVI 142 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~fD~ii 142 (222)
+..+|=+|-|.|.+...+.... ..+++++++|.+++.|+.+.....-.+.+++-.|..++.....+ ....||+++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 4578888888899998776543 48999999999999999988554333356666676666544433 335799998
Q ss_pred ECC-----------CCCCccHHHHHHHHh-CCCCcEEE--EeeCccchHhhH
Q 043853 143 SDP-----------NRPGMHMKLIKFLLK-LKAPRIVY--VSCNPATCARDL 180 (222)
Q Consensus 143 ~~p-----------p~~~~~~~~~~~l~~-l~~~~~v~--~~~~~~~~~~~~ 180 (222)
.+- |..-+...++...+. +.|.|... +.|...++...+
T Consensus 376 ~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~ 427 (482)
T KOG2352|consen 376 VDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEV 427 (482)
T ss_pred EECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHH
Confidence 763 222233444444444 67777755 344444444443
No 293
>PRK13699 putative methylase; Provisional
Probab=94.70 E-value=0.15 Score=41.09 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=37.2
Q ss_pred EEEEeCchhchhhhcCCCCCCCcEEEECCCCCC-----------------ccHHHHHH-HHhCCCCcEEEEeeCcc
Q 043853 117 ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG-----------------MHMKLIKF-LLKLKAPRIVYVSCNPA 174 (222)
Q Consensus 117 v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~-----------------~~~~~~~~-l~~l~~~~~v~~~~~~~ 174 (222)
.+++++|..+....+. ++.+|+|+.|||+.. ....++.. .+.+++++.+++.+...
T Consensus 2 ~~l~~gD~le~l~~lp--d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~ 75 (227)
T PRK13699 2 SRFILGNCIDVMARFP--DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN 75 (227)
T ss_pred CeEEechHHHHHHhCC--ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc
Confidence 3688999998876654 358999999999631 01122233 34478998888765543
No 294
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=94.67 E-value=0.006 Score=47.97 Aligned_cols=43 Identities=26% Similarity=0.280 Sum_probs=38.4
Q ss_pred CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHH
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRN 108 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n 108 (222)
++..++||+|+|.|-++..++....+|++.|.|..|....++.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc
Confidence 3457999999999999999998888999999999999888763
No 295
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.50 E-value=0.23 Score=45.86 Aligned_cols=98 Identities=14% Similarity=0.097 Sum_probs=63.5
Q ss_pred eEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 70 IVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 70 ~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
+|+= ||.|.++..+++ .+.+++.+|.|++.++.+++. +..++.||+.+..--.....++.|++++.-
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-------GYKVYYGDATQLELLRAAGAEKAEAIVITC 472 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-------CCeEEEeeCCCHHHHHhcCCccCCEEEEEe
Confidence 4444 455555554443 456999999999999988651 367899999775322122234788888876
Q ss_pred CCCCccHHHHHHHHhCCCCcEEEEeeCccch
Q 043853 146 NRPGMHMKLIKFLLKLKAPRIVYVSCNPATC 176 (222)
Q Consensus 146 p~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~ 176 (222)
+.......+...++...|...++.-+.....
T Consensus 473 ~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~ 503 (601)
T PRK03659 473 NEPEDTMKIVELCQQHFPHLHILARARGRVE 503 (601)
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence 6544445566667777787777766655333
No 296
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.50 E-value=0.1 Score=44.82 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=63.7
Q ss_pred CCCCCeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853 65 DDGSEIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 65 ~~~~~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
+.++..|+|.+|-.|.-+.++|.- -.+++|+|.++.-.+..++.+...|++.++...+|.... .+ ..+....-.+
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t-~~-~~~~~~v~~i 288 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT-AT-PEKFRDVTYI 288 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC-CC-cccccceeEE
Confidence 345789999999999999977752 349999999999999999999999998888889998774 21 1112346679
Q ss_pred EECCC
Q 043853 142 ISDPN 146 (222)
Q Consensus 142 i~~pp 146 (222)
+++|+
T Consensus 289 L~Dps 293 (413)
T KOG2360|consen 289 LVDPS 293 (413)
T ss_pred EeCCC
Confidence 99997
No 297
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=94.19 E-value=0.63 Score=37.26 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=70.9
Q ss_pred CCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh--cC----C---CCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD--FG----N---AFP 136 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~--~~----~---~~~ 136 (222)
.+..|+++|.|.|+++-.+...+ .+...+|+++..+.-.+...+... ....++++|+..+.-. +. . ++.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~~I~~~~~~~~~Rpw~d~~ 128 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRFKIEKAFSESLKRPWEDDP 128 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC-cceEEeccccceehHHhhcchhhcCCcccCC
Confidence 46899999999999999887653 588899999888877776655332 2588888887554211 11 0 111
Q ss_pred CCcEEEECCCCCCccHHHHHHHHhC--CCCcEEEEee
Q 043853 137 KPDIVISDPNRPGMHMKLIKFLLKL--KAPRIVYVSC 171 (222)
Q Consensus 137 ~fD~ii~~pp~~~~~~~~~~~l~~l--~~~~~v~~~~ 171 (222)
+-=.+|.|.|+.-..+-+++.+..+ ..|.+.|..+
T Consensus 129 p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt 165 (326)
T KOG0821|consen 129 PNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRT 165 (326)
T ss_pred CceEEeccCCccccchHHHHHHhhcccccCCeeecce
Confidence 2234788888877778888888774 4555666443
No 298
>PRK11524 putative methyltransferase; Provisional
Probab=93.86 E-value=0.22 Score=41.39 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=40.3
Q ss_pred cEEEEeCchhchhhhcCCCCCCCcEEEECCCCCC------c-----c-------HHHHHHH-HhCCCCcEEEEeeCccch
Q 043853 116 NATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPG------M-----H-------MKLIKFL-LKLKAPRIVYVSCNPATC 176 (222)
Q Consensus 116 ~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~------~-----~-------~~~~~~l-~~l~~~~~v~~~~~~~~~ 176 (222)
+.+++++|+.+....+. .+.||+|++|||+.. . . ..++..+ +.|+++|.+|+.++....
T Consensus 8 ~~~i~~gD~~~~l~~l~--~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~ 85 (284)
T PRK11524 8 AKTIIHGDALTELKKIP--SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENM 85 (284)
T ss_pred CCEEEeccHHHHHHhcc--cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhh
Confidence 46899999999875543 357999999999531 0 0 1233333 337999999988766544
Q ss_pred H
Q 043853 177 A 177 (222)
Q Consensus 177 ~ 177 (222)
.
T Consensus 86 ~ 86 (284)
T PRK11524 86 P 86 (284)
T ss_pred h
Confidence 3
No 299
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=93.69 E-value=0.28 Score=40.50 Aligned_cols=41 Identities=20% Similarity=0.063 Sum_probs=36.2
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHH
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACR 107 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~ 107 (222)
...+||-.|||.|.++..+|..+-.+.|.|.|-.|+-..+-
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHH
Confidence 46799999999999999999998899999999998755544
No 300
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=93.54 E-value=0.74 Score=33.42 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=48.8
Q ss_pred CCeEEEEecccch-hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 68 SEIVLDLFCGTGT-IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 68 ~~~vlDlg~G~G~-~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
..+++|+|-|.=. .+..|++.+..|+++|+++. ++. . .+.++..|+++....+- ...|+|.+-=|
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-~---g~~~v~DDif~P~l~iY---~~a~lIYSiRP 79 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-E---GVNFVVDDIFNPNLEIY---EGADLIYSIRP 79 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S---------------STTEE---SSS--HHHH---TTEEEEEEES-
T ss_pred CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-c---CcceeeecccCCCHHHh---cCCcEEEEeCC
Confidence 5699999988654 44577777889999999987 222 2 46799999987543322 25789988655
Q ss_pred CCCccHHHHHHHHhCCCCc
Q 043853 147 RPGMHMKLIKFLLKLKAPR 165 (222)
Q Consensus 147 ~~~~~~~~~~~l~~l~~~~ 165 (222)
..++++.+++..+.....-
T Consensus 80 P~El~~~il~lA~~v~adl 98 (127)
T PF03686_consen 80 PPELQPPILELAKKVGADL 98 (127)
T ss_dssp -TTSHHHHHHHHHHHT-EE
T ss_pred ChHHhHHHHHHHHHhCCCE
Confidence 5688888888777655433
No 301
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.50 E-value=1.5 Score=33.45 Aligned_cols=119 Identities=18% Similarity=0.057 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHH-hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchh
Q 043853 47 THQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTL-ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125 (222)
Q Consensus 47 ~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~l-a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~ 125 (222)
......+.+.+.+.. .+..+|+=+||=+-...+.- .....+++-.|+|..--.. +- + ++..=|..
T Consensus 9 ~~T~~~l~~~l~~~~----~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~--------~~-~-~F~fyD~~ 74 (162)
T PF10237_consen 9 DETAEFLARELLDGA----LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF--------GG-D-EFVFYDYN 74 (162)
T ss_pred HHHHHHHHHHHHHhc----CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc--------CC-c-ceEECCCC
Confidence 345555555555543 24678999998877766644 1234588999999543322 11 2 34444433
Q ss_pred c---hhhhcCCCCCCCcEEEECCCCC--CccHHHHHHHHhCC-CCcEEEEeeCccchHhhHHHh
Q 043853 126 K---IGGDFGNAFPKPDIVISDPNRP--GMHMKLIKFLLKLK-APRIVYVSCNPATCARDLDYL 183 (222)
Q Consensus 126 ~---~~~~~~~~~~~fD~ii~~pp~~--~~~~~~~~~l~~l~-~~~~v~~~~~~~~~~~~~~~l 183 (222)
+ ++..+ ...||+|++|||.- .........++.+. +++.++ -|-+..+...+..+
T Consensus 75 ~p~~~~~~l---~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii-~~Tg~~~~~~~~~l 134 (162)
T PF10237_consen 75 EPEELPEEL---KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKII-LCTGEEMEELIKKL 134 (162)
T ss_pred Chhhhhhhc---CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEE-EecHHHHHHHHHHH
Confidence 2 23333 14899999999952 22233345555554 434444 34444454455444
No 302
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.45 E-value=0.55 Score=42.92 Aligned_cols=95 Identities=8% Similarity=-0.057 Sum_probs=57.6
Q ss_pred eEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 70 IVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 70 ~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
+++=+ |.|.++..+++ .+.+++.+|.|++.++.+++. +...+.+|+.+..--....-++.|.+++.-
T Consensus 419 hiiI~--G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-------g~~~i~GD~~~~~~L~~a~i~~a~~viv~~ 489 (558)
T PRK10669 419 HALLV--GYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-------GIRAVLGNAANEEIMQLAHLDCARWLLLTI 489 (558)
T ss_pred CEEEE--CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-------CCeEEEcCCCCHHHHHhcCccccCEEEEEc
Confidence 44444 45555554443 456899999999998888641 478999999775322112235789777655
Q ss_pred CCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853 146 NRPGMHMKLIKFLLKLKAPRIVYVSCNP 173 (222)
Q Consensus 146 p~~~~~~~~~~~l~~l~~~~~v~~~~~~ 173 (222)
+.......+...++...+...++.-++.
T Consensus 490 ~~~~~~~~iv~~~~~~~~~~~iiar~~~ 517 (558)
T PRK10669 490 PNGYEAGEIVASAREKRPDIEIIARAHY 517 (558)
T ss_pred CChHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 4332223345555666666566655543
No 303
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=93.34 E-value=0.23 Score=39.51 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhcCCC--CCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchh
Q 043853 48 HQAEVLYKLIEDCAGLRD--DGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125 (222)
Q Consensus 48 ~~~~~~~~~i~~~~~~~~--~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~ 125 (222)
....-+++|+.+...... ...-++||+||=+....+.-.. .-.|+.||+++. .-.+.+.|..
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~-~fdvt~IDLns~---------------~~~I~qqDFm 93 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG-WFDVTRIDLNSQ---------------HPGILQQDFM 93 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCcccccC-ceeeEEeecCCC---------------CCCceeeccc
Confidence 355667788877653222 1236899999987776665332 236999999862 2356777777
Q ss_pred chhhhcCCCCCCCcEEEECC-----CCCCccHHHHHHHHh-CCCCcE
Q 043853 126 KIGGDFGNAFPKPDIVISDP-----NRPGMHMKLIKFLLK-LKAPRI 166 (222)
Q Consensus 126 ~~~~~~~~~~~~fD~ii~~p-----p~~~~~~~~~~~l~~-l~~~~~ 166 (222)
+.+.+.. +.+.||+|.++. |.+..-.+++..... |++++.
T Consensus 94 ~rplp~~-~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 94 ERPLPKN-ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred cCCCCCC-cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 7643221 235899997764 322222344443333 677776
No 304
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.31 E-value=0.77 Score=38.80 Aligned_cols=97 Identities=13% Similarity=0.069 Sum_probs=63.9
Q ss_pred CCCeEEEEecc-cchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeC-c-hhc---hhhhcCCCCCCC
Q 043853 67 GSEIVLDLFCG-TGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQG-D-LNK---IGGDFGNAFPKP 138 (222)
Q Consensus 67 ~~~~vlDlg~G-~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~-d-~~~---~~~~~~~~~~~f 138 (222)
.+.+||=+|+| .|..+...|+. ..+|+.+|.++..++.|++ .|.+.+..... + ..+ ....... ...+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g-~~~~ 243 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVTDPSSHKSSPQELAELVEKALG-KKQP 243 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEEeeccccccHHHHHHHHHhhcc-ccCC
Confidence 48899999999 67777777764 5699999999999999988 35543222222 1 122 2222111 1358
Q ss_pred cEEEECCCCCCccHHHHHHHHhCCCCcEEEEee
Q 043853 139 DIVISDPNRPGMHMKLIKFLLKLKAPRIVYVSC 171 (222)
Q Consensus 139 D~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~~~ 171 (222)
|+.|-. .+....+...+..++.+|.+.+..
T Consensus 244 d~~~dC---sG~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 244 DVTFDC---SGAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred CeEEEc---cCchHHHHHHHHHhccCCEEEEec
Confidence 888775 466666777777788887755443
No 305
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.28 E-value=0.72 Score=43.06 Aligned_cols=102 Identities=16% Similarity=0.111 Sum_probs=62.2
Q ss_pred CCeEEEEecccchhHHHHhhcC--------------CeEEEEeCCHHHHHHHHH--------------HHHH-----cCC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWV--------------KHVYGYEVVPQAISDACR--------------NAKL-----NNI 114 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~--------------~~v~gvD~~~~~i~~a~~--------------n~~~-----~~~ 114 (222)
.-+|+|+|=|+|...+...+.. -+++++|..|-..+..++ .... .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999776443211 178999986532222221 1111 122
Q ss_pred -------C--cEEEEeCchhchhhhcCCCCCCCcEEEECC--CCC---CccHHHHHHHHh-CCCCcEEEEeeC
Q 043853 115 -------S--NATFVQGDLNKIGGDFGNAFPKPDIVISDP--NRP---GMHMKLIKFLLK-LKAPRIVYVSCN 172 (222)
Q Consensus 115 -------~--~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p--p~~---~~~~~~~~~l~~-l~~~~~v~~~~~ 172 (222)
. .+++..+|+.+....+. ..+|+++.|+ |.. -...++...+.+ .++++.+...|.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~---~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t~ 207 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLD---ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFTS 207 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhcc---ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEeeh
Confidence 1 26688899988776543 3699999996 421 123566666666 467776654443
No 306
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.28 E-value=0.27 Score=43.99 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=65.9
Q ss_pred CCeEEEEecccchhHHHH---hhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhhcCCCCCCCcE
Q 043853 68 SEIVLDLFCGTGTIGLTL---ARW---VKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGDFGNAFPKPDI 140 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~l---a~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~fD~ 140 (222)
-.+|+-+|+|-|-+.-+. |+. .-+++++|.+|.++-..+. .+..+-+ +|+++..|..++.+. ..+.|+
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap----~eq~DI 442 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP----REQADI 442 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc----hhhccc
Confidence 457889999999977533 222 2289999999999987754 3222223 499999999998742 347888
Q ss_pred EEECC----CCCCccHHHHHHHHh-CCCCcEEE
Q 043853 141 VISDP----NRPGMHMKLIKFLLK-LKAPRIVY 168 (222)
Q Consensus 141 ii~~p----p~~~~~~~~~~~l~~-l~~~~~v~ 168 (222)
+++-. -..++.++=++-+.. +++.|+.+
T Consensus 443 ~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 443 IVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred hHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 86532 245666776776654 67777654
No 307
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.05 E-value=0.6 Score=43.29 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=62.1
Q ss_pred CeEEEEecccc-hhHH-HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 69 EIVLDLFCGTG-TIGL-TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 69 ~~vlDlg~G~G-~~~~-~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
.+|+=+|||.= .... .+.+.+.+++.+|.|++.++.+++. +..++.+|+.+..--.....++.|.+++.-+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-------GMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-------CCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 56777777633 3222 2334456899999999999988752 3678999997764221122347888877655
Q ss_pred CCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853 147 RPGMHMKLIKFLLKLKAPRIVYVSCNP 173 (222)
Q Consensus 147 ~~~~~~~~~~~l~~l~~~~~v~~~~~~ 173 (222)
.......+...++.+.|.-.++.-+..
T Consensus 474 d~~~n~~i~~~ar~~~p~~~iiaRa~d 500 (621)
T PRK03562 474 DPQTSLQLVELVKEHFPHLQIIARARD 500 (621)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 444445555666666777666665544
No 308
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=92.94 E-value=0.24 Score=40.28 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=51.1
Q ss_pred EEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC--C
Q 043853 72 LDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP--G 149 (222)
Q Consensus 72 lDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~--~ 149 (222)
+..+.||=.++..+.+..-+.+.+|+.|.-.+..++|+.. ..++++++.|..+....+..+..+=-+|++|||+. .
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~~ 139 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQKD 139 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----STT
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCch
Confidence 7788888888888887777999999999999999998864 34699999999887655443444566899999943 3
Q ss_pred ccHHHHHHHH
Q 043853 150 MHMKLIKFLL 159 (222)
Q Consensus 150 ~~~~~~~~l~ 159 (222)
-...+.+.+.
T Consensus 140 dy~~v~~~l~ 149 (245)
T PF04378_consen 140 DYQRVVDALA 149 (245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455555543
No 309
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.71 E-value=1.5 Score=37.50 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=59.8
Q ss_pred CCCCeEEEEecc-cchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 66 DGSEIVLDLFCG-TGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 66 ~~~~~vlDlg~G-~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
.++++|+=.|+| .|..++.+|+ .+.+|+++|.+++-.+.|++. |.+ .++...-.+...... +.||+++.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----GAd--~~i~~~~~~~~~~~~---~~~d~ii~ 235 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----GAD--HVINSSDSDALEAVK---EIADAIID 235 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----CCc--EEEEcCCchhhHHhH---hhCcEEEE
Confidence 358899888888 4446666666 568999999999999888874 333 333322112222211 24999988
Q ss_pred CCCCCCccHHHHHHHHhCCCCcEEEEeeCc
Q 043853 144 DPNRPGMHMKLIKFLLKLKAPRIVYVSCNP 173 (222)
Q Consensus 144 ~pp~~~~~~~~~~~l~~l~~~~~v~~~~~~ 173 (222)
.-+ . ..+...++.++++|.+.+-..+
T Consensus 236 tv~-~---~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 236 TVG-P---ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CCC-h---hhHHHHHHHHhcCCEEEEECCC
Confidence 766 3 4445555556766666555444
No 310
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.45 E-value=1.9 Score=38.38 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=52.4
Q ss_pred eEEEEecccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 70 IVLDLFCGTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 70 ~vlDlg~G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
+++-+|||.--+...+-+. ...|+.+|+|+..++.....-. ..-+-..+...|....... ++.||+++.-+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fe----dESFdiVIdkG 122 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFE----DESFDIVIDKG 122 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCC----CcceeEEEecC
Confidence 8999999999999977664 5699999999999988765432 1122378888888776543 34677776543
No 311
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.41 E-value=1.4 Score=31.42 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=58.0
Q ss_pred CCeEEEEecccch-hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 68 SEIVLDLFCGTGT-IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 68 ~~~vlDlg~G~G~-~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
..+|+|+|.|-=. .+-.+++.+..++++|+++. ++ + +.+++...|+++....+- ...|+|.+--|
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a---~-~g~~~v~DDitnP~~~iY---~~A~lIYSiRp 79 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TA---P-EGLRFVVDDITNPNISIY---EGADLIYSIRP 79 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cC---c-ccceEEEccCCCccHHHh---hCccceeecCC
Confidence 4589999877443 33477777889999999976 21 1 358899999987654322 25788988766
Q ss_pred CCCccHHHHHHHHhCCC
Q 043853 147 RPGMHMKLIKFLLKLKA 163 (222)
Q Consensus 147 ~~~~~~~~~~~l~~l~~ 163 (222)
.++++..+++..+.++.
T Consensus 80 ppEl~~~ildva~aVga 96 (129)
T COG1255 80 PPELQSAILDVAKAVGA 96 (129)
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 66777777777765543
No 312
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.41 E-value=0.88 Score=39.38 Aligned_cols=115 Identities=17% Similarity=0.208 Sum_probs=67.9
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHc-------CC-Cc-EEEEeC
Q 043853 54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLN-------NI-SN-ATFVQG 122 (222)
Q Consensus 54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~-------~~-~~-v~~~~~ 122 (222)
+.-+.+.+++.+ ++...|+|+|.|.+....|.. +..-.|+++....-+.|..+.+.+ |- .+ ++.+++
T Consensus 181 l~si~dEl~~g~--~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g 258 (419)
T KOG3924|consen 181 LRSIVDELKLGP--ADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG 258 (419)
T ss_pred HHHHHHHhccCC--CCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence 334444455444 889999999999999877653 457889998776666665554333 33 23 888888
Q ss_pred chhchhhhcCCCCCCCcEEEECCCC--CCccHHHHHHHHhCCCCcEEEEeeC
Q 043853 123 DLNKIGGDFGNAFPKPDIVISDPNR--PGMHMKLIKFLLKLKAPRIVYVSCN 172 (222)
Q Consensus 123 d~~~~~~~~~~~~~~fD~ii~~pp~--~~~~~~~~~~l~~l~~~~~v~~~~~ 172 (222)
+.........- ...-++|+.|--+ +.+..++.+.+..+++|-. +++..
T Consensus 259 sf~~~~~v~eI-~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtr-IiS~~ 308 (419)
T KOG3924|consen 259 SFLDPKRVTEI-QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTR-IISSK 308 (419)
T ss_pred ccCCHHHHHHH-hhcceEEEEecccCCHHHHHhhHHHHhhCCCcce-Eeccc
Confidence 87654322110 1256788887532 2233333333444455444 44554
No 313
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=91.07 E-value=1.1 Score=36.63 Aligned_cols=131 Identities=13% Similarity=0.134 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhh-------cCCeEEEEeCC---------------------
Q 043853 47 THQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLAR-------WVKHVYGYEVV--------------------- 98 (222)
Q Consensus 47 ~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~-------~~~~v~gvD~~--------------------- 98 (222)
......+...+...+.... ...|+|+||-.|+.++.++. ...++++.|.=
T Consensus 56 ~~Rl~~L~~~~~~v~~~~v--pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~ 133 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDV--PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHE 133 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS---SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCG
T ss_pred HHHHHHHHHHHHHHHhcCC--CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhh
Confidence 3444444454444443222 34799999999987764432 12478887740
Q ss_pred -----HHHHHHHHHHHHHcCC--CcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHHh----CCCCcEE
Q 043853 99 -----PQAISDACRNAKLNNI--SNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLLK----LKAPRIV 167 (222)
Q Consensus 99 -----~~~i~~a~~n~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~----l~~~~~v 167 (222)
....+..++|+...++ ++++++.|.+.+...... ..++-++-+|- ++.....+.|.. +.+||++
T Consensus 134 ~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p--~~~IAll~lD~---DlYesT~~aLe~lyprl~~GGiI 208 (248)
T PF05711_consen 134 YNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAP--IERIALLHLDC---DLYESTKDALEFLYPRLSPGGII 208 (248)
T ss_dssp CCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-T--T--EEEEEE------SHHHHHHHHHHHGGGEEEEEEE
T ss_pred cccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCC--CccEEEEEEec---cchHHHHHHHHHHHhhcCCCeEE
Confidence 1245666666666665 459999999987765432 23566666664 445555555443 6789999
Q ss_pred EEeeCcc-chHhhHHHhh
Q 043853 168 YVSCNPA-TCARDLDYLC 184 (222)
Q Consensus 168 ~~~~~~~-~~~~~~~~l~ 184 (222)
+++.-.. ...+.+..|.
T Consensus 209 i~DDY~~~gcr~AvdeF~ 226 (248)
T PF05711_consen 209 IFDDYGHPGCRKAVDEFR 226 (248)
T ss_dssp EESSTTTHHHHHHHHHHH
T ss_pred EEeCCCChHHHHHHHHHH
Confidence 8876432 2233344444
No 314
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=90.88 E-value=0.19 Score=41.51 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=30.7
Q ss_pred CCCeEEEEecccchhHHHHhhcC-CeEEEEeCCHHHH
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV-KHVYGYEVVPQAI 102 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~-~~v~gvD~~~~~i 102 (222)
.+++|||+|||.|..++.+...+ ..+...|.|...+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 47899999999999999776554 6889999998877
No 315
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.69 E-value=8 Score=34.09 Aligned_cols=75 Identities=20% Similarity=0.105 Sum_probs=49.5
Q ss_pred CCCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
...+++=+|+| .++..++ +.+..++.+|.+++.++.+++.. .++.++.+|..+...-.......+|.++
T Consensus 230 ~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~L~~~~~~~a~~vi 302 (453)
T PRK09496 230 PVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----PNTLVLHGDGTDQELLEEEGIDEADAFI 302 (453)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----CCCeEEECCCCCHHHHHhcCCccCCEEE
Confidence 35678777774 4444443 34669999999999888776642 2467899998655322122235789888
Q ss_pred ECCCCC
Q 043853 143 SDPNRP 148 (222)
Q Consensus 143 ~~pp~~ 148 (222)
+..+..
T Consensus 303 ~~~~~~ 308 (453)
T PRK09496 303 ALTNDD 308 (453)
T ss_pred ECCCCc
Confidence 877643
No 316
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.30 E-value=8.7 Score=31.87 Aligned_cols=42 Identities=19% Similarity=0.147 Sum_probs=29.3
Q ss_pred CeEEEEeccc-c-hhHHHHhhcCCeEEEEeCCHHHHHHHHHHHH
Q 043853 69 EIVLDLFCGT-G-TIGLTLARWVKHVYGYEVVPQAISDACRNAK 110 (222)
Q Consensus 69 ~~vlDlg~G~-G-~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~ 110 (222)
.+|.=+|+|. | .++..++..+.+|+.+|.+++.++.+++.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 3566677773 2 2333555666799999999999988766544
No 317
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=89.71 E-value=4.3 Score=28.38 Aligned_cols=79 Identities=18% Similarity=0.313 Sum_probs=41.0
Q ss_pred CCcEEEECCCCCC----------------ccHHHHHHHHhCCCCcEEEEeeC----ccchHhhHHHhhccCCCCccCC-C
Q 043853 137 KPDIVISDPNRPG----------------MHMKLIKFLLKLKAPRIVYVSCN----PATCARDLDYLCHGVGDQNIKG-C 195 (222)
Q Consensus 137 ~fD~ii~~pp~~~----------------~~~~~~~~l~~l~~~~~v~~~~~----~~~~~~~~~~l~~~~~~~~~~~-~ 195 (222)
+||+|+.|||+.. +...+++....+..|.+.++..+ .......++.+. ++. .
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll~G~~~~I~P~~~l~~~~~~~~lR~~l-------~~~~~ 74 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLLNGYLSFITPNSFLKSGKYGKKLRKFL-------LNNTN 74 (106)
T ss_pred CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHhCCeEEEEeChHHhCcCchHHHHHHHH-------hcCCC
Confidence 5999999999321 22234444333444444455532 222333344332 112 1
Q ss_pred e-EEeEeeeec-cCCCCCceeEEEEEEeC
Q 043853 196 Y-KLKSLQPVD-MFPHTPHIECVCLLELS 222 (222)
Q Consensus 196 ~-~~~~~~~~~-~~p~~~~~~~v~~~~~~ 222 (222)
. .+....... .|.....-.+|+.|+++
T Consensus 75 i~~i~~f~~~~~vF~~a~v~t~I~~~~k~ 103 (106)
T PF07669_consen 75 IKKIIDFGERKKVFEDASVYTCIIIFKKS 103 (106)
T ss_pred eeEEEECCCcccCCCCCCcceeEEEEEec
Confidence 2 233333322 68888888899988874
No 318
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=89.43 E-value=0.42 Score=38.97 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=33.3
Q ss_pred CCeEEEEecccchhHHHHhhc---C-------CeEEEEeCCHHHHHHHHHHHHH
Q 043853 68 SEIVLDLFCGTGTIGLTLARW---V-------KHVYGYEVVPQAISDACRNAKL 111 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~---~-------~~v~gvD~~~~~i~~a~~n~~~ 111 (222)
.-+|+|+|+|+|.++..+.+. . .+++-+|.||.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 369999999999999865542 1 2799999999999888888754
No 319
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=89.28 E-value=0.56 Score=36.56 Aligned_cols=70 Identities=23% Similarity=0.225 Sum_probs=47.1
Q ss_pred CCCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeC-chhchhhhc----CCCCCC
Q 043853 66 DGSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQAISDACRNAKLNNISNATFVQG-DLNKIGGDF----GNAFPK 137 (222)
Q Consensus 66 ~~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~-d~~~~~~~~----~~~~~~ 137 (222)
.++.+|||+||..|.++....+.. ..|.|||+-+- ...+.+.++++ |+.+..... .-+..+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 358999999999999999777654 38999998532 12334667776 554432110 113357
Q ss_pred CcEEEECCC
Q 043853 138 PDIVISDPN 146 (222)
Q Consensus 138 fD~ii~~pp 146 (222)
.|+|++|..
T Consensus 137 VdvVlSDMa 145 (232)
T KOG4589|consen 137 VDVVLSDMA 145 (232)
T ss_pred ccEEEeccC
Confidence 999999974
No 320
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.18 E-value=13 Score=31.62 Aligned_cols=92 Identities=12% Similarity=0.140 Sum_probs=54.0
Q ss_pred CeEEEEecccch--hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHH-------cCCC------cEEEEeCchhchhhhcCC
Q 043853 69 EIVLDLFCGTGT--IGLTLARWVKHVYGYEVVPQAISDACRNAKL-------NNIS------NATFVQGDLNKIGGDFGN 133 (222)
Q Consensus 69 ~~vlDlg~G~G~--~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~-------~~~~------~v~~~~~d~~~~~~~~~~ 133 (222)
++|-=+|+|+=+ ++..++..+.+|+..|.+++.++.++..++. .+.. ++++. .|..+..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~av----- 81 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEACV----- 81 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHHh-----
Confidence 567778887322 3345566788999999999988877664432 1211 12221 1222211
Q ss_pred CCCCCcEEEECCC-CCCccHHHHHHHHhCCCCcEEE
Q 043853 134 AFPKPDIVISDPN-RPGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 134 ~~~~fD~ii~~pp-~~~~~~~~~~~l~~l~~~~~v~ 168 (222)
...|+|+-.-| ...+...+...+....+.+.++
T Consensus 82 --~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 82 --ADADFIQESAPEREALKLELHERISRAAKPDAII 115 (321)
T ss_pred --cCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEE
Confidence 25799998877 3455666666776654444444
No 321
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.00 E-value=3.9 Score=36.09 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=53.9
Q ss_pred EEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 71 VLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 71 vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
|+=+| .|.++..+++ .+..++.+|.+++.++.+++.. +++++.+|..+...-.......+|.+++..+
T Consensus 3 viIiG--~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~------~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~ 74 (453)
T PRK09496 3 IIIVG--AGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL------DVRTVVGNGSSPDVLREAGAEDADLLIAVTD 74 (453)
T ss_pred EEEEC--CCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc------CEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence 44444 4777776654 3569999999999887776421 4788889886543211111246888888766
Q ss_pred CCCccHHHHHHHHhCCCCcEEEE
Q 043853 147 RPGMHMKLIKFLLKLKAPRIVYV 169 (222)
Q Consensus 147 ~~~~~~~~~~~l~~l~~~~~v~~ 169 (222)
.......+...++.+.+...+++
T Consensus 75 ~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 75 SDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred ChHHHHHHHHHHHHhcCCCeEEE
Confidence 44433334444455534433443
No 322
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.08 E-value=14 Score=30.62 Aligned_cols=42 Identities=17% Similarity=-0.003 Sum_probs=30.6
Q ss_pred CeEEEEecccchhHH--HHhhcCCeEEEEeCCHHHHHHHHHHHH
Q 043853 69 EIVLDLFCGTGTIGL--TLARWVKHVYGYEVVPQAISDACRNAK 110 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~--~la~~~~~v~gvD~~~~~i~~a~~n~~ 110 (222)
.+|.=+|+|+=+.++ .+++.+.+|+.+|.++..++.+++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 357777887544444 445566799999999999988877653
No 323
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=87.97 E-value=5.2 Score=34.57 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=33.4
Q ss_pred CCCeEEEEeccc-chhHHHHhhc-CC-eEEEEeCCHHHHHHHHHH
Q 043853 67 GSEIVLDLFCGT-GTIGLTLARW-VK-HVYGYEVVPQAISDACRN 108 (222)
Q Consensus 67 ~~~~vlDlg~G~-G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n 108 (222)
++.+||..|||. |..++.+++. +. +++++|.+++..+.+++.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 478899999886 7777777764 33 699999999998888874
No 324
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.94 E-value=1.3 Score=32.98 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=30.5
Q ss_pred EEecccc--hhHHHHh--hc--CCeEEEEeCCHHHHHHHHHH--HHHcCCCc-EEEEe
Q 043853 73 DLFCGTG--TIGLTLA--RW--VKHVYGYEVVPQAISDACRN--AKLNNISN-ATFVQ 121 (222)
Q Consensus 73 Dlg~G~G--~~~~~la--~~--~~~v~gvD~~~~~i~~a~~n--~~~~~~~~-v~~~~ 121 (222)
|+|++.| .....+. .. ..+++++|-+|..++..++| +..+...+ +++..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~ 58 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHP 58 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEE
Confidence 8999999 5555432 22 45899999999999999999 66664322 44444
No 325
>PTZ00357 methyltransferase; Provisional
Probab=87.29 E-value=1.6 Score=40.78 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=56.6
Q ss_pred CeEEEEecccchhHHHH---hhc-C--CeEEEEeCCHHHHHHHHHHHHH---cCC------CcEEEEeCchhchhhhc--
Q 043853 69 EIVLDLFCGTGTIGLTL---ARW-V--KHVYGYEVVPQAISDACRNAKL---NNI------SNATFVQGDLNKIGGDF-- 131 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~l---a~~-~--~~v~gvD~~~~~i~~a~~n~~~---~~~------~~v~~~~~d~~~~~~~~-- 131 (222)
..|+=+|+|-|-+.-.. ++. + -++++||.||.++...+.+... -+- ..|+++..|..++....
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999976533 222 2 2899999997765555444322 111 13899999999885321
Q ss_pred -----CCCCCCCcEEEECC----CCCCccHHHHHHHH
Q 043853 132 -----GNAFPKPDIVISDP----NRPGMHMKLIKFLL 159 (222)
Q Consensus 132 -----~~~~~~fD~ii~~p----p~~~~~~~~~~~l~ 159 (222)
....+++|+||+-. -..++.++-++-+.
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQ 818 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFH 818 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHH
Confidence 11113699997743 24566666666554
No 326
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=87.10 E-value=6.2 Score=31.75 Aligned_cols=99 Identities=16% Similarity=0.077 Sum_probs=53.9
Q ss_pred CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCC-CCCcEEE
Q 043853 68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAF-PKPDIVI 142 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~fD~ii 142 (222)
.++||=+|+ +|.++..+ ++.+.+|+++..++...... .. ...+++++.+|+.+....+.... ..+|+||
T Consensus 17 ~~~ilItGa-sG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~~--~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi 90 (251)
T PLN00141 17 TKTVFVAGA-TGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS---LP--QDPSLQIVRADVTEGSDKLVEAIGDDSDAVI 90 (251)
T ss_pred CCeEEEECC-CcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh---cc--cCCceEEEEeeCCCCHHHHHHHhhcCCCEEE
Confidence 467777774 44444433 34456888887776533221 11 11258889999876322221111 2589999
Q ss_pred ECCCCCC---c----------cHHHHHHHHhCCCCcEEEEeeC
Q 043853 143 SDPNRPG---M----------HMKLIKFLLKLKAPRIVYVSCN 172 (222)
Q Consensus 143 ~~pp~~~---~----------~~~~~~~l~~l~~~~~v~~~~~ 172 (222)
++++... . ...+++.+...+.+.++++++.
T Consensus 91 ~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~ 133 (251)
T PLN00141 91 CATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI 133 (251)
T ss_pred ECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence 8865211 0 1344555554455678887763
No 327
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.89 E-value=2.6 Score=35.18 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=57.7
Q ss_pred CCCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 67 GSEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 67 ~~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
.++.||=-|.|+|. +++.+|+++.++.-.|++....+...+.++..| .+.....|+.+..+ ...++-+.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~G~ 114 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEVGD 114 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 57889999988886 556778888899999999999999988888776 57777777755432 11223357
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.|.
T Consensus 115 V~ILVNNA 122 (300)
T KOG1201|consen 115 VDILVNNA 122 (300)
T ss_pred ceEEEecc
Confidence 89988875
No 328
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=86.68 E-value=5.3 Score=27.40 Aligned_cols=57 Identities=19% Similarity=0.381 Sum_probs=38.3
Q ss_pred CeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853 69 EIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR 147 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~ 147 (222)
.+|| +.||+|.-+..++ +..++.++.+|++ +++...+..+..... ..+|+|++.|.-
T Consensus 4 ~~IL-l~C~~G~sSS~l~----------------~k~~~~~~~~gi~-~~v~a~~~~~~~~~~----~~~Dvill~pqi 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLV----------------NKMNKAAEEYGVP-VKIAAGSYGAAGEKL----DDADVVLLAPQV 60 (95)
T ss_pred cEEE-EECCCchhHHHHH----------------HHHHHHHHHCCCc-EEEEEecHHHHHhhc----CCCCEEEECchH
Confidence 3455 7888886554433 3335566667774 889998887765432 368999998863
No 329
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=86.25 E-value=2.9 Score=35.97 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=41.7
Q ss_pred HHHHHHHhcCCCC-CCCeEEEEecccchhHHHHhh----c------CCeEEEEeCCHHHHHHHHHHHHHcC
Q 043853 54 YKLIEDCAGLRDD-GSEIVLDLFCGTGTIGLTLAR----W------VKHVYGYEVVPQAISDACRNAKLNN 113 (222)
Q Consensus 54 ~~~i~~~~~~~~~-~~~~vlDlg~G~G~~~~~la~----~------~~~v~gvD~~~~~i~~a~~n~~~~~ 113 (222)
..++.+..+..+. ..-.++|+|+|+|.++.-+.+ . ..++.-||.|++..+.=+++++...
T Consensus 63 a~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 63 AEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred HHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 4445554443332 345799999999999875443 2 2388999999999988888876543
No 330
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=85.91 E-value=0.71 Score=38.22 Aligned_cols=90 Identities=17% Similarity=0.101 Sum_probs=58.6
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcE-EEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNA-TFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
.+..++|.|||.|-.+..- -...++|.|.+...+..+++. +. ....+|+...+.. ...||..+...
T Consensus 45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~----~~s~d~~lsia 111 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFR----EESFDAALSIA 111 (293)
T ss_pred CcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC-------CCceeehhhhhcCCCC----CCccccchhhh
Confidence 3789999999999765421 122689999999988888753 33 6888899887764 24688776554
Q ss_pred CC-----CCccHHHHHHH-HhCCCCcEEEE
Q 043853 146 NR-----PGMHMKLIKFL-LKLKAPRIVYV 169 (222)
Q Consensus 146 p~-----~~~~~~~~~~l-~~l~~~~~v~~ 169 (222)
-. ......+++.+ +.++|+|-..+
T Consensus 112 vihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 112 VIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 21 11223444443 44788776443
No 331
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.83 E-value=8.5 Score=32.97 Aligned_cols=94 Identities=18% Similarity=0.108 Sum_probs=56.5
Q ss_pred CCeEEEEecc-cchhHHHHhhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeC-chhchhhhcCCCCCCCcEEEE
Q 043853 68 SEIVLDLFCG-TGTIGLTLARW--VKHVYGYEVVPQAISDACRNAKLNNISNATFVQG-DLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 68 ~~~vlDlg~G-~G~~~~~la~~--~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~fD~ii~ 143 (222)
+.+|+=+||| .|.+++.+++. ..+|+.+|.++.-++.|++... .+.+..... +......... ....+|++|=
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g---~~~~~~~~~~~~~~~~~~~t-~g~g~D~vie 244 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG---ADVVVNPSEDDAGAEILELT-GGRGADVVIE 244 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC---CeEeecCccccHHHHHHHHh-CCCCCCEEEE
Confidence 3489999999 67777777764 3599999999999999987431 111111111 2211111111 1136999887
Q ss_pred CCCCCCccHHHHHHHHhCCCCcEEE
Q 043853 144 DPNRPGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 144 ~pp~~~~~~~~~~~l~~l~~~~~v~ 168 (222)
.. +....+...+..++++|.+.
T Consensus 245 ~~---G~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 245 AV---GSPPALDQALEALRPGGTVV 266 (350)
T ss_pred CC---CCHHHHHHHHHHhcCCCEEE
Confidence 54 33344555666667766654
No 332
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.77 E-value=2.9 Score=35.96 Aligned_cols=102 Identities=16% Similarity=0.030 Sum_probs=53.1
Q ss_pred CCeEEEEecccchhHHHHhhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 68 SEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~~---~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
.+++||+|.|.|.-..++-.-.+ .++-++.||..-+...........+.......|+..-...+... +.|++++..
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a-d~ytl~i~~ 192 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA-DLYTLAIVL 192 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc-ceeehhhhh
Confidence 56799999999987776654433 66777888766555544433222222333344443322222211 356666543
Q ss_pred C---CCCCccH---HHHHHHHh-CCCCcEEEEee
Q 043853 145 P---NRPGMHM---KLIKFLLK-LKAPRIVYVSC 171 (222)
Q Consensus 145 p---p~~~~~~---~~~~~l~~-l~~~~~v~~~~ 171 (222)
- |. +... ..++.+.. +.|||.+.+..
T Consensus 193 ~eLl~d-~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 193 DELLPD-GNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hhhccc-cCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 2 21 1112 23444433 56777665443
No 333
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=85.71 E-value=12 Score=34.46 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=46.6
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHc-----C---CCcEEEEeCchhchhhhcCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLN-----N---ISNATFVQGDLNKIGGDFGNAF 135 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~-----~---~~~v~~~~~d~~~~~~~~~~~~ 135 (222)
++++|=.| |+|+++..++ +.+.+|++++.++...+.....+... + ..+++++.+|+.+... +....
T Consensus 80 gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es-I~~aL 157 (576)
T PLN03209 80 EDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ-IGPAL 157 (576)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH-HHHHh
Confidence 55555554 5677776554 34668999999887766555444322 1 1247889999876432 11112
Q ss_pred CCCcEEEECC
Q 043853 136 PKPDIVISDP 145 (222)
Q Consensus 136 ~~fD~ii~~p 145 (222)
...|+||++.
T Consensus 158 ggiDiVVn~A 167 (576)
T PLN03209 158 GNASVVICCI 167 (576)
T ss_pred cCCCEEEEcc
Confidence 3689988875
No 334
>PLN02540 methylenetetrahydrofolate reductase
Probab=85.61 E-value=5.1 Score=36.67 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=60.4
Q ss_pred cccCCHH-HHHHHHHHHHHHhcCCCCCCCeEEEEecccch----hHHHHhh----c-----CCeEEEEeCCHHHHHHHHH
Q 043853 42 FFQTNTH-QAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGT----IGLTLAR----W-----VKHVYGYEVVPQAISDACR 107 (222)
Q Consensus 42 f~~~~~~-~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~----~~~~la~----~-----~~~v~gvD~~~~~i~~a~~ 107 (222)
||++... ..+.+++.+..+... +...+++.-|.|+ .++.++. . ..++++.|.+...++.+-.
T Consensus 5 fFPPKt~~g~~nL~~~~~rl~~~----~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~ 80 (565)
T PLN02540 5 FFPPKTEEGVDNLFERMDRMVAH----GPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALE 80 (565)
T ss_pred EECCCCchHHHHHHHHHHHHhcc----CCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHH
Confidence 4555443 477777777776543 3579999999996 2333332 2 1389999999999999999
Q ss_pred HHHHcCCCcEEEEeCchhc
Q 043853 108 NAKLNNISNATFVQGDLNK 126 (222)
Q Consensus 108 n~~~~~~~~v~~~~~d~~~ 126 (222)
.+...|+.|+=.+.||...
T Consensus 81 ~a~~~GIrNILALrGDpp~ 99 (565)
T PLN02540 81 TIKSNGIQNILALRGDPPH 99 (565)
T ss_pred HHHHCCCCEEEEECCCCCC
Confidence 9999999999999999754
No 335
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=85.56 E-value=2.8 Score=28.84 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 101 AISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 101 ~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
+++..++.++.+|++ +++...+..+..... ..+|+|++.|-
T Consensus 15 ~~~ki~~~~~~~~~~-~~v~~~~~~~~~~~~----~~~Diil~~Pq 55 (96)
T cd05564 15 LVKKMKKAAEKRGID-AEIEAVPESELEEYI----DDADVVLLGPQ 55 (96)
T ss_pred HHHHHHHHHHHCCCc-eEEEEecHHHHHHhc----CCCCEEEEChh
Confidence 344557777778885 899999988775321 47999999885
No 336
>PRK07904 short chain dehydrogenase; Provisional
Probab=85.34 E-value=5.7 Score=32.05 Aligned_cols=77 Identities=17% Similarity=0.050 Sum_probs=47.5
Q ss_pred CCCeEEEEecccchhHHHHh----hc-CCeEEEEeCCHHH-HHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLA----RW-VKHVYGYEVVPQA-ISDACRNAKLNNISNATFVQGDLNKIG------GDFGNA 134 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la----~~-~~~v~gvD~~~~~-i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~ 134 (222)
.++++|=.|+ +|+++..++ +. +.+|+.++.++.. ++.+.+.++..+..+++++..|+.+.. .....
T Consensus 7 ~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~- 84 (253)
T PRK07904 7 NPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA- 84 (253)
T ss_pred CCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh-
Confidence 3567777776 556665554 33 3689999888764 665555565554446888888875532 11111
Q ss_pred CCCCcEEEECC
Q 043853 135 FPKPDIVISDP 145 (222)
Q Consensus 135 ~~~fD~ii~~p 145 (222)
.+..|+++.+.
T Consensus 85 ~g~id~li~~a 95 (253)
T PRK07904 85 GGDVDVAIVAF 95 (253)
T ss_pred cCCCCEEEEee
Confidence 14689888764
No 337
>PRK05867 short chain dehydrogenase; Provisional
Probab=85.22 E-value=6.4 Score=31.53 Aligned_cols=76 Identities=14% Similarity=0.053 Sum_probs=48.8
Q ss_pred CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|++.| ++. .+++.+.+|+.++.++..++...+.++..+ .++.++..|+.+... ......+.
T Consensus 9 ~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 9 GKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 577888886544 443 444557799999999888777766665544 247778888755321 11111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 87 id~lv~~a 94 (253)
T PRK05867 87 IDIAVCNA 94 (253)
T ss_pred CCEEEECC
Confidence 89998875
No 338
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=85.11 E-value=3.2 Score=34.26 Aligned_cols=87 Identities=18% Similarity=0.055 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcC-----CCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCc
Q 043853 49 QAEVLYKLIEDCAGL-----RDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGD 123 (222)
Q Consensus 49 ~~~~~~~~i~~~~~~-----~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d 123 (222)
.+-++-+.+...+.. .-.+++..+|+|+-.|+.+..+.+++-.|++||.-+.+-... . -..|+....|
T Consensus 188 StLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~sL~-----d--tg~v~h~r~D 260 (358)
T COG2933 188 STLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQSLM-----D--TGQVTHLRED 260 (358)
T ss_pred hhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcceEEEEeccchhhhhhh-----c--ccceeeeecc
Confidence 344444445444421 124689999999999999999999889999999875432221 1 1238888999
Q ss_pred hhchhhhcCCCCCCCcEEEECCC
Q 043853 124 LNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 124 ~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
.+.+.++ ..+.|..+||.-
T Consensus 261 Gfk~~P~----r~~idWmVCDmV 279 (358)
T COG2933 261 GFKFRPT----RSNIDWMVCDMV 279 (358)
T ss_pred CcccccC----CCCCceEEeehh
Confidence 9888652 247999999973
No 339
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=84.65 E-value=1.5 Score=35.96 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=28.4
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVV 98 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~ 98 (222)
+++.+.|+++|||..+-.+.+.+..|++-|+-
T Consensus 27 s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle 58 (330)
T COG3392 27 SGKIFCDIFAGTGVVGRFFKKAGNKIIANDLE 58 (330)
T ss_pred CCCeeeeeccCccHHHHHHHHhcchhhhchHH
Confidence 46789999999999999998888899988873
No 340
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.53 E-value=12 Score=31.61 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=51.0
Q ss_pred CCCeEEEEecc-cchhHHHHhhc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 67 GSEIVLDLFCG-TGTIGLTLARW-VK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 67 ~~~~vlDlg~G-~G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
++++||=.||| .|..++.+++. +. +++++|.+++.++.+++ .|.+. +.....+..+... ..+.+|+++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~----~~g~~D~vi 240 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKA----EKGYFDVSF 240 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhc----cCCCCCEEE
Confidence 46788877765 33344455553 33 79999999988887765 35532 2221223322221 112589888
Q ss_pred ECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853 143 SDPNRPGMHMKLIKFLLKLKAPRIVYV 169 (222)
Q Consensus 143 ~~pp~~~~~~~~~~~l~~l~~~~~v~~ 169 (222)
-.... ...+...+..++++|.+..
T Consensus 241 d~~G~---~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 241 EVSGH---PSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred ECCCC---HHHHHHHHHHhhcCCEEEE
Confidence 65421 2234445555677776553
No 341
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=84.17 E-value=15 Score=33.43 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=30.7
Q ss_pred CCCeEEEEeccc-chhHHHHhh-cCCeEEEEeCCHHHHHHHHH
Q 043853 67 GSEIVLDLFCGT-GTIGLTLAR-WVKHVYGYEVVPQAISDACR 107 (222)
Q Consensus 67 ~~~~vlDlg~G~-G~~~~~la~-~~~~v~gvD~~~~~i~~a~~ 107 (222)
++.+++=+|+|. |..++.+++ .+..|+.+|.++..++.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 468999999984 445555554 46789999999998777765
No 342
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=83.50 E-value=3.4 Score=34.90 Aligned_cols=40 Identities=18% Similarity=0.022 Sum_probs=34.6
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHH
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDAC 106 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~ 106 (222)
...+||-.|||.|.++..+|..+.++-|-|.|--|+-...
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~ 189 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSS 189 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHH
Confidence 3578999999999999999999999999999988875543
No 343
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=83.14 E-value=1.5 Score=41.26 Aligned_cols=44 Identities=27% Similarity=0.218 Sum_probs=39.3
Q ss_pred CCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHH
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAK 110 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~ 110 (222)
.+..++|.++|-|.+.+...+.+..++++|.+|.+.-..|..+.
T Consensus 90 ~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 90 EGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred cCCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHh
Confidence 46789999999999999999999999999999999877776664
No 344
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=82.85 E-value=2.8 Score=29.80 Aligned_cols=88 Identities=15% Similarity=0.093 Sum_probs=53.7
Q ss_pred ccchhHHHHhhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHH
Q 043853 77 GTGTIGLTLARW-VKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKL 154 (222)
Q Consensus 77 G~G~~~~~la~~-~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~ 154 (222)
|.|..++.+|+. +.+|+++|.++.-.+.+++ .|.+. +.....|+.+....+.. ...+|++|-... ....+
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~~-~~~~d~vid~~g---~~~~~ 72 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELTG-GRGVDVVIDCVG---SGDTL 72 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHTT-TSSEEEEEESSS---SHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hcccccccccccccccccccccc-cccceEEEEecC---cHHHH
Confidence 567888877764 5799999999988887765 45432 22222333333333221 136999887653 23455
Q ss_pred HHHHHhCCCCcEEEEeeC
Q 043853 155 IKFLLKLKAPRIVYVSCN 172 (222)
Q Consensus 155 ~~~l~~l~~~~~v~~~~~ 172 (222)
...+..++++|.+.+...
T Consensus 73 ~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 73 QEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp HHHHHHEEEEEEEEEESS
T ss_pred HHHHHHhccCCEEEEEEc
Confidence 556666787777665543
No 345
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=82.83 E-value=2.5 Score=33.20 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=41.4
Q ss_pred CCeEEEEecccchhHHHHhhc----C--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhch
Q 043853 68 SEIVLDLFCGTGTIGLTLARW----V--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI 127 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~----~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~ 127 (222)
...|+|.|.--|+-++.+|.. + .+|+++|+|-...+-+... .+++.+++++..+.
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dp 130 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDP 130 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCH
Confidence 578999999999988877642 3 3899999986655444322 56799999987665
No 346
>PRK06125 short chain dehydrogenase; Provisional
Probab=82.51 E-value=12 Score=30.10 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=47.7
Q ss_pred CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh--hcCCCCCCCcEE
Q 043853 68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG--DFGNAFPKPDIV 141 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~~~~~~fD~i 141 (222)
++++|=.|+ +|+++.. +++.+.+|+.++.++...+.+.+.+....-.++.++..|+.+... .........|++
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~l 85 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDIL 85 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCEE
Confidence 567777775 4445544 344566999999998877776666654322347788888754321 111112468999
Q ss_pred EECC
Q 043853 142 ISDP 145 (222)
Q Consensus 142 i~~p 145 (222)
+.+.
T Consensus 86 v~~a 89 (259)
T PRK06125 86 VNNA 89 (259)
T ss_pred EECC
Confidence 8875
No 347
>PRK06172 short chain dehydrogenase; Provisional
Probab=82.28 E-value=11 Score=29.98 Aligned_cols=76 Identities=16% Similarity=0.081 Sum_probs=48.5
Q ss_pred CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~ 137 (222)
++++|=.|+ +|+++.. +++.+.+|+.++.++..++.+.+.++..+. ++.++.+|+.+.. .......++
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 84 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG-EALFVACDVTRDAEVKALVEQTIAAYGR 84 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 567887776 4444444 444567999999998877777666655442 4788888886532 111111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|+++.+.
T Consensus 85 id~li~~a 92 (253)
T PRK06172 85 LDYAFNNA 92 (253)
T ss_pred CCEEEECC
Confidence 89998875
No 348
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=81.94 E-value=9.4 Score=30.38 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=48.2
Q ss_pred CCCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhch--------hhhcCCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKI--------GGDFGNA 134 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~--------~~~~~~~ 134 (222)
+++++|=.| |+|.++..++ +.+.+|++++.++...+...+.++..+..++.++..|+... ...+...
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEEQ 89 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHH
Confidence 366777777 5666666444 34669999999988777666666555444566776666421 1111112
Q ss_pred CCCCcEEEECC
Q 043853 135 FPKPDIVISDP 145 (222)
Q Consensus 135 ~~~fD~ii~~p 145 (222)
..+.|.++.+.
T Consensus 90 ~~~id~vi~~A 100 (247)
T PRK08945 90 FGRLDGVLHNA 100 (247)
T ss_pred hCCCCEEEECC
Confidence 24689998764
No 349
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=81.56 E-value=9.3 Score=30.16 Aligned_cols=101 Identities=22% Similarity=0.225 Sum_probs=54.9
Q ss_pred CCCeEEEEecccchhHHHHhhcC-C--eEEEEeCCHH----HHHHHHHHH--HHcCCCcEEEEeCchhchhhhcCCCCCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV-K--HVYGYEVVPQ----AISDACRNA--KLNNISNATFVQGDLNKIGGDFGNAFPK 137 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~-~--~v~gvD~~~~----~i~~a~~n~--~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 137 (222)
++.+|+|+-.|.|.++-.++... + .|++.--.+. ..+..+.+. ++....|++.+-.+...+... +.
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~p-----q~ 122 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAP-----QK 122 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCC-----Cc
Confidence 48999999999999999887642 2 6776643322 111122221 222234556665555544421 24
Q ss_pred CcEEEECCC---------CCCc-cHHHHHHHHhCCCCcEEEEeeC
Q 043853 138 PDIVISDPN---------RPGM-HMKLIKFLLKLKAPRIVYVSCN 172 (222)
Q Consensus 138 fD~ii~~pp---------~~~~-~~~~~~~l~~l~~~~~v~~~~~ 172 (222)
.|+++.+.- ..+. ..-..+..+.|+|||+..+..+
T Consensus 123 ~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 123 LDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 555544321 1122 2233334566999998876664
No 350
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=81.15 E-value=19 Score=30.53 Aligned_cols=89 Identities=10% Similarity=0.048 Sum_probs=49.1
Q ss_pred CCCCeEEEEecc-cchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853 66 DGSEIVLDLFCG-TGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 66 ~~~~~vlDlg~G-~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
.++++||=+||| .|.+++.+++. +.+++++|.++.-++.+++ .+. .... + +.... ..+|++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~~~~--~--~~~~~-----~g~d~v 226 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--TYLI--D--DIPED-----LAVDHA 226 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--eeeh--h--hhhhc-----cCCcEE
Confidence 347889989875 33334444442 3589999999988888764 222 1111 1 11111 148888
Q ss_pred EECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853 142 ISDPNRPGMHMKLIKFLLKLKAPRIVYV 169 (222)
Q Consensus 142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~ 169 (222)
+=..........+...+..++++|.+.+
T Consensus 227 iD~~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 227 FECVGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred EECCCCCccHHHHHHHHHhCcCCcEEEE
Confidence 7543211122345556666777776543
No 351
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=80.94 E-value=10 Score=33.19 Aligned_cols=108 Identities=16% Similarity=0.124 Sum_probs=56.0
Q ss_pred CeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhc--------CCCC-
Q 043853 69 EIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDF--------GNAF- 135 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~--------~~~~- 135 (222)
.+|-=+| -|+.++. +|..+.+|+|+|+++..++..+. |- ..+..-+..+..... ..+.
T Consensus 10 ~~I~ViG--LGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G~--~~i~e~~~~~~v~~~v~~g~lraTtd~~ 80 (436)
T COG0677 10 ATIGVIG--LGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----GE--SYIEEPDLDEVVKEAVESGKLRATTDPE 80 (436)
T ss_pred eEEEEEc--cccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----Cc--ceeecCcHHHHHHHHHhcCCceEecChh
Confidence 3444444 5555543 34567799999999998887743 11 233333332211100 0000
Q ss_pred --CCCcEEEECCC--C-------CCccHHHHHHHHh-CCCCcEEEEee--CccchHhhHHHhhc
Q 043853 136 --PKPDIVISDPN--R-------PGMHMKLIKFLLK-LKAPRIVYVSC--NPATCARDLDYLCH 185 (222)
Q Consensus 136 --~~fD~ii~~pp--~-------~~~~~~~~~~l~~-l~~~~~v~~~~--~~~~~~~~~~~l~~ 185 (222)
..-|++++.-| . -++.....+.+.. |++|.++++.+ .|.+.......+++
T Consensus 81 ~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle 144 (436)
T COG0677 81 ELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE 144 (436)
T ss_pred hcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence 14566544433 1 1122334444443 78888887665 46777776666654
No 352
>PRK08339 short chain dehydrogenase; Provisional
Probab=80.69 E-value=12 Score=30.43 Aligned_cols=76 Identities=20% Similarity=0.280 Sum_probs=47.5
Q ss_pred CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~ 137 (222)
++++|=.|++.| ++. .+++.+.+|+.++.++..++.+.+.+....-.++.++.+|+.+.. .... ..+.
T Consensus 8 ~k~~lItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~-~~g~ 85 (263)
T PRK08339 8 GKLAFTTASSKG-IGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK-NIGE 85 (263)
T ss_pred CCEEEEeCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH-hhCC
Confidence 567776776544 444 444557799999999887777766654332224778888876542 1111 1246
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 86 iD~lv~na 93 (263)
T PRK08339 86 PDIFFFST 93 (263)
T ss_pred CcEEEECC
Confidence 89988775
No 353
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=79.94 E-value=25 Score=27.00 Aligned_cols=92 Identities=21% Similarity=0.187 Sum_probs=52.3
Q ss_pred EEEEecccchh--HHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc--------CC---------CcEEEEeCchhchhhhc
Q 043853 71 VLDLFCGTGTI--GLTLARWVKHVYGYEVVPQAISDACRNAKLN--------NI---------SNATFVQGDLNKIGGDF 131 (222)
Q Consensus 71 vlDlg~G~G~~--~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~--------~~---------~~v~~~~~d~~~~~~~~ 131 (222)
|-=+|+|+=+- +..++..+.+|+-+|.+++.++.+++.++.. .+ .++. ...|..+..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~--- 77 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV--- 77 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC---
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh---
Confidence 44466664332 2344566789999999999999888877651 11 1233 233333321
Q ss_pred CCCCCCCcEEEECCC-CCCccHHHHHHHHhCCCCcEEEEee
Q 043853 132 GNAFPKPDIVISDPN-RPGMHMKLIKFLLKLKAPRIVYVSC 171 (222)
Q Consensus 132 ~~~~~~fD~ii~~pp-~~~~~~~~~~~l~~l~~~~~v~~~~ 171 (222)
..|+|+=..| ......++...+....+...++.+.
T Consensus 78 -----~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 78 -----DADLVIEAIPEDLELKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp -----TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE-
T ss_pred -----hhheehhhccccHHHHHHHHHHHHHHhCCCceEEec
Confidence 4688887766 3355677778887765555555444
No 354
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=79.92 E-value=28 Score=27.46 Aligned_cols=76 Identities=14% Similarity=0.085 Sum_probs=47.3
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.| |+|.++..++ +.+.+|++++.++.....+...+...+. ++.++.+|+.+... ......+.
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG-KARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 56777555 4666666554 4466999999997766665555544332 48888888865421 11111136
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|+++.+.
T Consensus 84 ~d~vi~~a 91 (251)
T PRK12826 84 LDILVANA 91 (251)
T ss_pred CCEEEECC
Confidence 89988876
No 355
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.72 E-value=35 Score=28.55 Aligned_cols=105 Identities=17% Similarity=0.109 Sum_probs=57.2
Q ss_pred eEEEEecccch--hHHHHhhcCCeEEEEeCCHHHHHHHHHHHH-------HcCC----------CcEEEEeCchhchhhh
Q 043853 70 IVLDLFCGTGT--IGLTLARWVKHVYGYEVVPQAISDACRNAK-------LNNI----------SNATFVQGDLNKIGGD 130 (222)
Q Consensus 70 ~vlDlg~G~G~--~~~~la~~~~~v~gvD~~~~~i~~a~~n~~-------~~~~----------~~v~~~~~d~~~~~~~ 130 (222)
+|.=+|+|.=+ ++..+++.+.+|+.+|.++..++.++..+. ..|. .++++ ..|..+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~-~~~~~~a~-- 80 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV-TDSLADAV-- 80 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE-ECcHHHhh--
Confidence 56666766322 333455566799999999998887765432 1221 01222 22322211
Q ss_pred cCCCCCCCcEEEECCCCC-CccHHHHHHHHhCCCCcEEEEeeCccchHhhHHH
Q 043853 131 FGNAFPKPDIVISDPNRP-GMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDY 182 (222)
Q Consensus 131 ~~~~~~~fD~ii~~pp~~-~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~ 182 (222)
...|+|+...|.. .....+...+....++..++.++........+..
T Consensus 81 -----~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~ 128 (308)
T PRK06129 81 -----ADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE 128 (308)
T ss_pred -----CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH
Confidence 2579999988743 2445556666655555555554443333334443
No 356
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=79.70 E-value=27 Score=28.92 Aligned_cols=93 Identities=12% Similarity=0.029 Sum_probs=50.5
Q ss_pred CCCeEEEEecc-cchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcE-EEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 67 GSEIVLDLFCG-TGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNA-TFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 67 ~~~~vlDlg~G-~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v-~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
.+.+||..|+| .|..++.+|+ .+.++++++.++...+.+++ .+++.+ .....+..+.. ... ....+|+++-
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~-~~~~~D~vid 238 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG-LGGGFDVIFD 238 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh-cCCCceEEEE
Confidence 46778887765 4666666665 35689999999988877754 344321 11111111111 111 2246998886
Q ss_pred CCCCCCccHHHHHHHHhCCCCcEEE
Q 043853 144 DPNRPGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 144 ~pp~~~~~~~~~~~l~~l~~~~~v~ 168 (222)
... ....+...++.++++|.++
T Consensus 239 ~~g---~~~~~~~~~~~l~~~G~~v 260 (338)
T cd08254 239 FVG---TQPTFEDAQKAVKPGGRIV 260 (338)
T ss_pred CCC---CHHHHHHHHHHhhcCCEEE
Confidence 432 1123334445567666654
No 357
>PRK07890 short chain dehydrogenase; Provisional
Probab=79.62 E-value=18 Score=28.86 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=47.3
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|+ +|+++..++ ..+.+|+.++.++...+.+.+.+...+. ++.++..|+.+... ......+.
T Consensus 5 ~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (258)
T PRK07890 5 GKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITDEDQCANLVALALERFGR 82 (258)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 567775554 555555444 4567999999998877666665554343 47888888854321 11111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 83 ~d~vi~~a 90 (258)
T PRK07890 83 VDALVNNA 90 (258)
T ss_pred ccEEEECC
Confidence 89998875
No 358
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=79.39 E-value=11 Score=28.11 Aligned_cols=89 Identities=18% Similarity=0.155 Sum_probs=52.7
Q ss_pred EEEEecccchhHH--HHhhcCCeEEEEeCCHHHHHHHHHHHHHcC-C------CcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853 71 VLDLFCGTGTIGL--TLARWVKHVYGYEVVPQAISDACRNAKLNN-I------SNATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 71 vlDlg~G~G~~~~--~la~~~~~v~gvD~~~~~i~~a~~n~~~~~-~------~~v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
|.=+|+|.++.++ .++..+.+|+-...+++.++..+++-.... . +++.+ ..|..+... ..|+|
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~-------~ad~I 73 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALE-------DADII 73 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHT-------T-SEE
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhC-------cccEE
Confidence 5557888777766 445567799999999988887776543111 1 12433 455544432 57899
Q ss_pred EECCCCCCccHHHHHHHHhC-CCCcEEE
Q 043853 142 ISDPNRPGMHMKLIKFLLKL-KAPRIVY 168 (222)
Q Consensus 142 i~~pp~~~~~~~~~~~l~~l-~~~~~v~ 168 (222)
+..-|... .+.+.+.+... +++..++
T Consensus 74 iiavPs~~-~~~~~~~l~~~l~~~~~ii 100 (157)
T PF01210_consen 74 IIAVPSQA-HREVLEQLAPYLKKGQIII 100 (157)
T ss_dssp EE-S-GGG-HHHHHHHHTTTSHTT-EEE
T ss_pred EecccHHH-HHHHHHHHhhccCCCCEEE
Confidence 88877554 46777777663 3444444
No 359
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=79.29 E-value=17 Score=27.21 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=44.4
Q ss_pred EEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 71 VLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 71 vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
|-=+|+ |..+..+ ++.+.++++.|.+++..+.+.+. .++. ..+..+... ..|+|++.-|
T Consensus 4 Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-------g~~~-~~s~~e~~~-------~~dvvi~~v~ 66 (163)
T PF03446_consen 4 IGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA-------GAEV-ADSPAEAAE-------QADVVILCVP 66 (163)
T ss_dssp EEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT-------TEEE-ESSHHHHHH-------HBSEEEE-SS
T ss_pred EEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh-------hhhh-hhhhhhHhh-------cccceEeecc
Confidence 333455 4555444 44567999999999877776543 2333 345555543 3599998876
Q ss_pred CCCccHHHHHH--HHh-CCCCcEEEEeeC
Q 043853 147 RPGMHMKLIKF--LLK-LKAPRIVYVSCN 172 (222)
Q Consensus 147 ~~~~~~~~~~~--l~~-l~~~~~v~~~~~ 172 (222)
.......++.. +.. +.++ .+++.+.
T Consensus 67 ~~~~v~~v~~~~~i~~~l~~g-~iiid~s 94 (163)
T PF03446_consen 67 DDDAVEAVLFGENILAGLRPG-KIIIDMS 94 (163)
T ss_dssp SHHHHHHHHHCTTHGGGS-TT-EEEEE-S
T ss_pred cchhhhhhhhhhHHhhccccc-eEEEecC
Confidence 43333444443 333 4444 4555553
No 360
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=79.19 E-value=2.2 Score=34.70 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=44.0
Q ss_pred CeEEEEecccchhHHHHhhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 69 EIVLDLFCGTGTIGLTLARW---VKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~la~~---~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
-+|+++.+|.|++-.++-.. +.-|.++|+++.+-+.-+.|...+=+....+....+.++.. -.+|++..+|
T Consensus 4 LrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~lt~kefd~------l~~~m~lMSP 77 (338)
T KOG0919|consen 4 LRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSLTVKEFDK------LQANMLLMSP 77 (338)
T ss_pred eehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccchhhccccceeeHhhhhh------cccceEeeCC
Confidence 47999999999987766543 23678999998877766665211101111122223333322 1588999998
Q ss_pred C
Q 043853 146 N 146 (222)
Q Consensus 146 p 146 (222)
|
T Consensus 78 p 78 (338)
T KOG0919|consen 78 P 78 (338)
T ss_pred C
Confidence 7
No 361
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.16 E-value=36 Score=28.29 Aligned_cols=94 Identities=18% Similarity=0.136 Sum_probs=54.7
Q ss_pred CeEEEEecccch--hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc-------CC----------CcEEEEeCchhchhh
Q 043853 69 EIVLDLFCGTGT--IGLTLARWVKHVYGYEVVPQAISDACRNAKLN-------NI----------SNATFVQGDLNKIGG 129 (222)
Q Consensus 69 ~~vlDlg~G~G~--~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~-------~~----------~~v~~~~~d~~~~~~ 129 (222)
.+|-=+|+|+=+ ++..++..+.+|+..|.+++.++.+++.+... |. .+++ ...|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~--- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGD--- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHH---
Confidence 467778887433 34455666789999999999999877665432 11 0111 1222211
Q ss_pred hcCCCCCCCcEEEECCCC-CCccHHHHHHHHhCC-CCcEEEEee
Q 043853 130 DFGNAFPKPDIVISDPNR-PGMHMKLIKFLLKLK-APRIVYVSC 171 (222)
Q Consensus 130 ~~~~~~~~fD~ii~~pp~-~~~~~~~~~~l~~l~-~~~~v~~~~ 171 (222)
+ ...|+|+-.-|. ..+...+...+.... +.+.++.+.
T Consensus 82 -~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~sn 120 (286)
T PRK07819 82 -F----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASN 120 (286)
T ss_pred -h----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 1 357999887663 344455566666653 444444443
No 362
>PRK08862 short chain dehydrogenase; Provisional
Probab=78.91 E-value=15 Score=29.18 Aligned_cols=77 Identities=18% Similarity=0.125 Sum_probs=49.0
Q ss_pred CCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCC-C
Q 043853 68 SEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFP-K 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~-~ 137 (222)
++.+|=.|++.|. ++..+++.+.+|+.++.++..++.+.+.++..+. ++.....|..+.. .......+ .
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 83 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTD-NVYSFQLKDFSQESIRHLFDAIEQQFNRA 83 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC-CeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 5678888877765 3335556677999999999888877766665543 3555555553321 11111223 6
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|+++.+.
T Consensus 84 iD~li~na 91 (227)
T PRK08862 84 PDVLVNNW 91 (227)
T ss_pred CCEEEECC
Confidence 89998875
No 363
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=78.88 E-value=15 Score=29.42 Aligned_cols=73 Identities=15% Similarity=0.072 Sum_probs=45.1
Q ss_pred eEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCCCc
Q 043853 70 IVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPKPD 139 (222)
Q Consensus 70 ~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~fD 139 (222)
++|=.|++ |+++..+ ++.+.+|+.++.++..++.+.+.++..+ ++.++..|+.+.. .......+..|
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG--EVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 45656654 4455444 4456799999999888777766665432 4778888875432 11111224689
Q ss_pred EEEECC
Q 043853 140 IVISDP 145 (222)
Q Consensus 140 ~ii~~p 145 (222)
+++.+.
T Consensus 79 ~li~na 84 (259)
T PRK08340 79 ALVWNA 84 (259)
T ss_pred EEEECC
Confidence 998764
No 364
>PRK07478 short chain dehydrogenase; Provisional
Probab=78.80 E-value=20 Score=28.64 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=47.6
Q ss_pred CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~ 137 (222)
++++|=.|+ +|+++..+ ++.+.+++.++.++...+.+.+.++..+. ++.++..|+.+.. .......+.
T Consensus 6 ~k~~lItGa-s~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 6 GKVAIITGA-SSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 456775554 45555544 44567999999998887777666655443 4778888875542 111111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 84 id~li~~a 91 (254)
T PRK07478 84 LDIAFNNA 91 (254)
T ss_pred CCEEEECC
Confidence 89998875
No 365
>PRK05599 hypothetical protein; Provisional
Probab=78.79 E-value=16 Score=29.22 Aligned_cols=75 Identities=11% Similarity=0.022 Sum_probs=45.9
Q ss_pred eEEEEecccchhHHHHhh---cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCCCcE
Q 043853 70 IVLDLFCGTGTIGLTLAR---WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPKPDI 140 (222)
Q Consensus 70 ~vlDlg~G~G~~~~~la~---~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~fD~ 140 (222)
.+|=.|++. +++..+++ .+.+|+.++.++..++.+.+.++..+-+.+.++..|+.+.. .......+..|+
T Consensus 2 ~vlItGas~-GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 2 SILILGGTS-DIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred eEEEEeCcc-HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 456556644 44544433 35688888988888877777676555434777888875532 111112247899
Q ss_pred EEECC
Q 043853 141 VISDP 145 (222)
Q Consensus 141 ii~~p 145 (222)
++.+.
T Consensus 81 lv~na 85 (246)
T PRK05599 81 AVVAF 85 (246)
T ss_pred EEEec
Confidence 98765
No 366
>PRK09291 short chain dehydrogenase; Provisional
Probab=78.72 E-value=15 Score=29.18 Aligned_cols=75 Identities=13% Similarity=0.050 Sum_probs=45.8
Q ss_pred CeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 69 EIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
+++|=.|+ +|+++..++ +.+.++++++.++...+..+......+. ++.++.+|+.+...-...-....|++|.+
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 35666665 555555443 4567999999888776666655554443 47888888766421110011268999886
Q ss_pred C
Q 043853 145 P 145 (222)
Q Consensus 145 p 145 (222)
.
T Consensus 81 a 81 (257)
T PRK09291 81 A 81 (257)
T ss_pred C
Confidence 4
No 367
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=78.66 E-value=5.7 Score=28.74 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=42.6
Q ss_pred EEEEeCchhchhhhcCCCCCCCcEEEECC--CCC---CccHHHHHHHHh-CCCCcEEEEeeCccchHhhHHHhhccCCCC
Q 043853 117 ATFVQGDLNKIGGDFGNAFPKPDIVISDP--NRP---GMHMKLIKFLLK-LKAPRIVYVSCNPATCARDLDYLCHGVGDQ 190 (222)
Q Consensus 117 v~~~~~d~~~~~~~~~~~~~~fD~ii~~p--p~~---~~~~~~~~~l~~-l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~ 190 (222)
+++..+|+.+....+. ..+|+++.|+ |.. -...++...+.+ +++++++...+.....-+.+.
T Consensus 33 L~L~~gDa~~~l~~l~---~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~~Vr~~L~--------- 100 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLD---ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSAGAVRRALQ--------- 100 (124)
T ss_dssp EEEEES-HHHHHHHB----T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--BHHHHHHHH---------
T ss_pred EEEEEcHHHHHHHhCc---ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeechHHHHHHHH---------
Confidence 7889999988877655 4899999997 322 123677777766 456665554443322222222
Q ss_pred ccCCCeEEeEeee
Q 043853 191 NIKGCYKLKSLQP 203 (222)
Q Consensus 191 ~~~~~~~~~~~~~ 203 (222)
..||.+.....
T Consensus 101 --~aGF~v~~~~g 111 (124)
T PF05430_consen 101 --QAGFEVEKVPG 111 (124)
T ss_dssp --HCTEEEEEEE-
T ss_pred --HcCCEEEEcCC
Confidence 56898877655
No 368
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.62 E-value=24 Score=29.63 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=54.2
Q ss_pred eEEEEeccc-chhH-HHHhhcC--CeEEEEeCCHHHHH-HHHHHHHHcCC-CcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 70 IVLDLFCGT-GTIG-LTLARWV--KHVYGYEVVPQAIS-DACRNAKLNNI-SNATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 70 ~vlDlg~G~-G~~~-~~la~~~--~~v~gvD~~~~~i~-~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
+|.=+|+|. |... ..++..+ .++..+|.++...+ .+......... ....+..+|..++ ...|++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l--------~~aDiVii 73 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADC--------KGADVVVI 73 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHh--------CCCCEEEE
Confidence 466688864 2222 2334444 58999999987654 33332221111 1233444443321 35799888
Q ss_pred CCCC---CC------------ccHHHHHHHHhCCCCcEEEEeeCccch
Q 043853 144 DPNR---PG------------MHMKLIKFLLKLKAPRIVYVSCNPATC 176 (222)
Q Consensus 144 ~pp~---~~------------~~~~~~~~l~~l~~~~~v~~~~~~~~~ 176 (222)
..+. .+ +...+.+.+....+.+++++.++|...
T Consensus 74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~ 121 (308)
T cd05292 74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDV 121 (308)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHH
Confidence 7641 11 123455556667788999888887443
No 369
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=77.38 E-value=35 Score=29.13 Aligned_cols=93 Identities=10% Similarity=-0.091 Sum_probs=49.2
Q ss_pred CCCeEEEEecc-cchhHHHHhhc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 67 GSEIVLDLFCG-TGTIGLTLARW-VK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 67 ~~~~vlDlg~G-~G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
++++||=.|+| .|..++.+|+. +. +|+++|.++.-.+.+++ .|.+. +.....|..+...... . ..+|+++
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-~-~g~d~vi 264 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-G-GGVDYAF 264 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-C-CCCCEEE
Confidence 36677777764 23344445543 44 69999999998887764 35432 1222222222211111 1 2589888
Q ss_pred ECCCCCCccHHHHHHHHhCCCCcEEE
Q 043853 143 SDPNRPGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 143 ~~pp~~~~~~~~~~~l~~l~~~~~v~ 168 (222)
-... ....+...+..++++|.+.
T Consensus 265 d~~G---~~~~~~~~~~~l~~~G~iv 287 (371)
T cd08281 265 EMAG---SVPALETAYEITRRGGTTV 287 (371)
T ss_pred ECCC---ChHHHHHHHHHHhcCCEEE
Confidence 6432 1233444455566666554
No 370
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=77.34 E-value=34 Score=27.10 Aligned_cols=76 Identities=18% Similarity=0.130 Sum_probs=48.1
Q ss_pred CCeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++| +..|+|.++..+++ .+.+++.++.++...+.....++..+. +++++.+|+.+... ........
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG-KAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 34566 44457777776664 356899999998877776666654443 47888888764321 11111136
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|+++.+.
T Consensus 82 ~d~vi~~a 89 (258)
T PRK12429 82 VDILVNNA 89 (258)
T ss_pred CCEEEECC
Confidence 89988764
No 371
>PRK05854 short chain dehydrogenase; Provisional
Probab=77.29 E-value=24 Score=29.54 Aligned_cols=77 Identities=12% Similarity=-0.009 Sum_probs=47.7
Q ss_pred CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcC-CCcEEEEeCchhchhh------hcCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNN-ISNATFVQGDLNKIGG------DFGNAFP 136 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~-~~~v~~~~~d~~~~~~------~~~~~~~ 136 (222)
+++++=.|++ |+++.. +++.+.+|+.+..++...+.+.+.+.... -.++.++..|+.+... ......+
T Consensus 14 gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 5677766665 454544 44456799999998877766666554332 2247888888765431 1111224
Q ss_pred CCcEEEECC
Q 043853 137 KPDIVISDP 145 (222)
Q Consensus 137 ~fD~ii~~p 145 (222)
..|++|.+.
T Consensus 93 ~iD~li~nA 101 (313)
T PRK05854 93 PIHLLINNA 101 (313)
T ss_pred CccEEEECC
Confidence 689998875
No 372
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=76.84 E-value=23 Score=28.53 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=49.5
Q ss_pred CCCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCC
Q 043853 67 GSEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFP 136 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~ 136 (222)
.++++|=.|++.|. +. .+++.+.+++.++.++..++.+...++..+. ++.++..|+.+... .......
T Consensus 9 ~~k~~lItGa~~~i-G~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGI-GFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 35678877776544 33 4455567899999998887777777665443 47788888755421 1111123
Q ss_pred CCcEEEECC
Q 043853 137 KPDIVISDP 145 (222)
Q Consensus 137 ~fD~ii~~p 145 (222)
.+|+++.+.
T Consensus 87 ~id~li~~a 95 (265)
T PRK07097 87 VIDILVNNA 95 (265)
T ss_pred CCCEEEECC
Confidence 689998775
No 373
>PRK06139 short chain dehydrogenase; Provisional
Probab=76.67 E-value=18 Score=30.63 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=48.7
Q ss_pred CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|+ +|+++.. +++.+.+|+.++.++..++...+.++..+. ++.++..|+.+... ........
T Consensus 7 ~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 7 GAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 566776665 4454444 445577999999999888887777766554 36677777754321 11111246
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|++|.+.
T Consensus 85 iD~lVnnA 92 (330)
T PRK06139 85 IDVWVNNV 92 (330)
T ss_pred CCEEEECC
Confidence 89998875
No 374
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=76.54 E-value=12 Score=24.96 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=45.6
Q ss_pred ccchhHHHHhh----cC---CeEE-EEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC
Q 043853 77 GTGTIGLTLAR----WV---KHVY-GYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP 148 (222)
Q Consensus 77 G~G~~~~~la~----~~---~~v~-gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~ 148 (222)
|.|.++.++++ .+ .+++ +.+.+++..+...+... +.+...+..+... ..|+||+.-|..
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~~-------~advvilav~p~ 72 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG------VQATADDNEEAAQ-------EADVVILAVKPQ 72 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT------TEEESEEHHHHHH-------HTSEEEE-S-GG
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc------cccccCChHHhhc-------cCCEEEEEECHH
Confidence 56666655543 35 4788 55999988877765432 3455545555443 368887776543
Q ss_pred CccHHHHHHHHhCCCCcEEE
Q 043853 149 GMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 149 ~~~~~~~~~l~~l~~~~~v~ 168 (222)
. ..++.+.+....++.+++
T Consensus 73 ~-~~~v~~~i~~~~~~~~vi 91 (96)
T PF03807_consen 73 Q-LPEVLSEIPHLLKGKLVI 91 (96)
T ss_dssp G-HHHHHHHHHHHHTTSEEE
T ss_pred H-HHHHHHHHhhccCCCEEE
Confidence 3 356666664445555554
No 375
>PRK07102 short chain dehydrogenase; Provisional
Probab=76.49 E-value=16 Score=29.00 Aligned_cols=75 Identities=15% Similarity=0.067 Sum_probs=46.1
Q ss_pred eEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh--cC-CCCCCCcEEE
Q 043853 70 IVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD--FG-NAFPKPDIVI 142 (222)
Q Consensus 70 ~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~--~~-~~~~~fD~ii 142 (222)
+++=.| |+|+++..++ +.+.+|+.++.++...+...+.+...+-.+++++.+|+.+...- .. .-...+|+++
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv 81 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVL 81 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEE
Confidence 566555 5566666544 44669999999987766555555443334688899988664311 10 0012479998
Q ss_pred ECC
Q 043853 143 SDP 145 (222)
Q Consensus 143 ~~p 145 (222)
.+.
T Consensus 82 ~~a 84 (243)
T PRK07102 82 IAV 84 (243)
T ss_pred ECC
Confidence 764
No 376
>PRK07024 short chain dehydrogenase; Provisional
Probab=76.07 E-value=17 Score=29.20 Aligned_cols=74 Identities=20% Similarity=0.153 Sum_probs=44.7
Q ss_pred CeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCCC
Q 043853 69 EIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPKP 138 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~f 138 (222)
+++|=.|+ +|+++..++ +.+.+++.++.+++.++...+.+...+ ++.++.+|+.+... ......+..
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 35555664 556665444 456699999999877765554443222 57888888865321 111112357
Q ss_pred cEEEECC
Q 043853 139 DIVISDP 145 (222)
Q Consensus 139 D~ii~~p 145 (222)
|+++.+.
T Consensus 80 d~lv~~a 86 (257)
T PRK07024 80 DVVIANA 86 (257)
T ss_pred CEEEECC
Confidence 9998874
No 377
>PRK09242 tropinone reductase; Provisional
Probab=75.51 E-value=28 Score=27.82 Aligned_cols=77 Identities=12% Similarity=0.032 Sum_probs=48.0
Q ss_pred CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcC-CCcEEEEeCchhchhh------hcCCCCC
Q 043853 68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNN-ISNATFVQGDLNKIGG------DFGNAFP 136 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~-~~~v~~~~~d~~~~~~------~~~~~~~ 136 (222)
++++|=.|++. +++. .+++.+.+|+.++.+++..+...+.+.... -.++.++.+|+.+... ......+
T Consensus 9 ~k~~lItGa~~-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGASK-GIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56777777644 4443 344456799999999887777766665431 1247888888765321 1111224
Q ss_pred CCcEEEECC
Q 043853 137 KPDIVISDP 145 (222)
Q Consensus 137 ~fD~ii~~p 145 (222)
.+|+++.+.
T Consensus 88 ~id~li~~a 96 (257)
T PRK09242 88 GLHILVNNA 96 (257)
T ss_pred CCCEEEECC
Confidence 689988876
No 378
>PRK07677 short chain dehydrogenase; Provisional
Probab=75.36 E-value=19 Score=28.74 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=45.3
Q ss_pred CeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCCC
Q 043853 69 EIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPKP 138 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~f 138 (222)
+++|=.|++. +++.. +++.+.+|+.++.++...+.+.+.+...+ .++.++..|+.+.. .......+..
T Consensus 2 k~~lItG~s~-giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSS-GMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 4667666644 44443 44456799999999877776666555433 24788888875431 1111112368
Q ss_pred cEEEECC
Q 043853 139 DIVISDP 145 (222)
Q Consensus 139 D~ii~~p 145 (222)
|+++.+.
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 9988764
No 379
>PRK07062 short chain dehydrogenase; Provisional
Probab=75.16 E-value=26 Score=28.14 Aligned_cols=77 Identities=12% Similarity=0.040 Sum_probs=47.4
Q ss_pred CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhh------hcCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGG------DFGNAFP 136 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~------~~~~~~~ 136 (222)
++++|=.|++. +++.. +++.+.+|+.++.++..++.+.+.+..... .++.++..|+.+... ......+
T Consensus 8 ~k~~lItGas~-giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 8 GRVAVVTGGSS-GIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 56777777554 44443 444567899999998877766665544321 247777888765421 1111224
Q ss_pred CCcEEEECC
Q 043853 137 KPDIVISDP 145 (222)
Q Consensus 137 ~fD~ii~~p 145 (222)
..|+++.+.
T Consensus 87 ~id~li~~A 95 (265)
T PRK07062 87 GVDMLVNNA 95 (265)
T ss_pred CCCEEEECC
Confidence 689998875
No 380
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=74.70 E-value=13 Score=32.36 Aligned_cols=42 Identities=17% Similarity=0.091 Sum_probs=30.3
Q ss_pred CCCeEEEEecccchhHH-HHhhcCCeEEEEeCCHHHHHHHHHHH
Q 043853 67 GSEIVLDLFCGTGTIGL-TLARWVKHVYGYEVVPQAISDACRNA 109 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~-~la~~~~~v~gvD~~~~~i~~a~~n~ 109 (222)
++++||-|.+| |...+ .+...-.+|++||+||......+-..
T Consensus 35 ~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 35 PDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 47889999765 44444 44555569999999999887765444
No 381
>PRK08643 acetoin reductase; Validated
Probab=74.68 E-value=25 Score=27.97 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=46.7
Q ss_pred CeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCCC
Q 043853 69 EIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPKP 138 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~f 138 (222)
+++|=.| |+|+++..++ +.+.+++.++.++...+.+...+...+. ++.++.+|+.+... ......+..
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGG-KAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 4566555 5555555444 4566999999998877777666654432 47788888865421 111112368
Q ss_pred cEEEECC
Q 043853 139 DIVISDP 145 (222)
Q Consensus 139 D~ii~~p 145 (222)
|+++.+.
T Consensus 81 d~vi~~a 87 (256)
T PRK08643 81 NVVVNNA 87 (256)
T ss_pred CEEEECC
Confidence 9988875
No 382
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=74.59 E-value=5.7 Score=34.64 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.2
Q ss_pred CCeEEEEecccchhHHHH
Q 043853 68 SEIVLDLFCGTGTIGLTL 85 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~l 85 (222)
.-.|+|+|||+|.+++.+
T Consensus 64 ~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred ceeEEEecCCCCccHHHH
Confidence 558999999999988754
No 383
>PRK07791 short chain dehydrogenase; Provisional
Probab=74.54 E-value=23 Score=29.14 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=44.2
Q ss_pred CCeEEEEecccchhHH----HHhhcCCeEEEEeCCH---------HHHHHHHHHHHHcCCCcEEEEeCchhchh------
Q 043853 68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVP---------QAISDACRNAKLNNISNATFVQGDLNKIG------ 128 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~---------~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------ 128 (222)
++++|=.|++.|. +. .+++.+.+++.++.+. ..++.+.+.+...+. ++.++..|+.+..
T Consensus 6 ~k~~lITGas~GI-G~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 6 GRVVIVTGAGGGI-GRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG-EAVANGDDIADWDGAANLV 83 (286)
T ss_pred CCEEEEECCCchH-HHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC-ceEEEeCCCCCHHHHHHHH
Confidence 5678877766544 44 4445567888887764 444444444443332 3677778875532
Q ss_pred hhcCCCCCCCcEEEECC
Q 043853 129 GDFGNAFPKPDIVISDP 145 (222)
Q Consensus 129 ~~~~~~~~~fD~ii~~p 145 (222)
.......+..|+++.+.
T Consensus 84 ~~~~~~~g~id~lv~nA 100 (286)
T PRK07791 84 DAAVETFGGLDVLVNNA 100 (286)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 11111224689998875
No 384
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=74.24 E-value=7.3 Score=35.31 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=33.0
Q ss_pred CCCeEEEEeccc-chhHHHHhh-cCCeEEEEeCCHHHHHHHHH
Q 043853 67 GSEIVLDLFCGT-GTIGLTLAR-WVKHVYGYEVVPQAISDACR 107 (222)
Q Consensus 67 ~~~~vlDlg~G~-G~~~~~la~-~~~~v~gvD~~~~~i~~a~~ 107 (222)
++.+|+=+|||. |..++..|+ .+..|+++|.+++.++.+++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 578999999994 555666665 35699999999999888876
No 385
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=74.15 E-value=29 Score=27.66 Aligned_cols=76 Identities=18% Similarity=0.146 Sum_probs=49.3
Q ss_pred CCeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~ 137 (222)
++++|=.| |+|+++..+++ .+.+|+.++.++..++...+.++..+. ++.++..|+.+.. .........
T Consensus 10 ~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07523 10 GRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEIGP 87 (255)
T ss_pred CCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 56788777 56666665543 466899999998877776666655443 3777888876532 111111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|++|.+.
T Consensus 88 ~d~li~~a 95 (255)
T PRK07523 88 IDILVNNA 95 (255)
T ss_pred CCEEEECC
Confidence 89998876
No 386
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.04 E-value=49 Score=27.31 Aligned_cols=40 Identities=10% Similarity=-0.006 Sum_probs=27.5
Q ss_pred eEEEEecccch--hHHHHhhcCCeEEEEeCCHHHHHHHHHHH
Q 043853 70 IVLDLFCGTGT--IGLTLARWVKHVYGYEVVPQAISDACRNA 109 (222)
Q Consensus 70 ~vlDlg~G~G~--~~~~la~~~~~v~gvD~~~~~i~~a~~n~ 109 (222)
+|.=+|+|.=+ ++..+++.+.+|+.+|.+++.++.+.+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Confidence 46666666322 33344556779999999999999887654
No 387
>PRK07109 short chain dehydrogenase; Provisional
Probab=73.77 E-value=28 Score=29.50 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=48.6
Q ss_pred CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|+ +|+++..+ ++.+.+|+.++.++..++...+.++..+. ++.++.+|+.+... ......+.
T Consensus 8 ~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 8 RQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 456666664 55555544 44567999999998888777777765554 47788888755421 11111246
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|++|.+.
T Consensus 86 iD~lInnA 93 (334)
T PRK07109 86 IDTWVNNA 93 (334)
T ss_pred CCEEEECC
Confidence 89998875
No 388
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=73.65 E-value=45 Score=26.67 Aligned_cols=70 Identities=13% Similarity=0.109 Sum_probs=45.3
Q ss_pred eEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 70 IVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 70 ~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
+++=+||| .++. .|.+.+..++.+|.+++.++.....- ..++.+++|..+...-.......+|+++..-
T Consensus 2 ~iiIiG~G--~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~-----~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 2 KIIIIGAG--RVGRSVARELSEEGHNVVLIDRDEERVEEFLADE-----LDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred EEEEECCc--HHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh-----cceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 45556666 3333 44556779999999999888743311 1478899988765432222235799998865
Q ss_pred C
Q 043853 146 N 146 (222)
Q Consensus 146 p 146 (222)
.
T Consensus 75 ~ 75 (225)
T COG0569 75 G 75 (225)
T ss_pred C
Confidence 5
No 389
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=73.64 E-value=5.8 Score=32.62 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHH
Q 043853 52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAI 102 (222)
Q Consensus 52 ~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i 102 (222)
.++.++..++. ....+.+|++||+|.+.+.+.. ..++.-|+++..+
T Consensus 13 ~l~~~i~~~~p---~~~~~yvEPF~Gggsv~l~~~~--~~~~lND~n~~Li 58 (266)
T TIGR00571 13 SLLPEIKKHLP---KNFNCLVEPFVGGGAVFFNLNP--KRYLLNDINEDLI 58 (266)
T ss_pred HHHHHHHHhcC---cccCEEEEecCCcchhheeecC--cEEEEecCCHHHH
Confidence 34455655552 2235899999999999986643 3577789998875
No 390
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=73.38 E-value=13 Score=31.91 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=30.2
Q ss_pred CCCeEEEEecc-cchhHHHHhh--cCCeEEEEeCCHHHHHHHHH
Q 043853 67 GSEIVLDLFCG-TGTIGLTLAR--WVKHVYGYEVVPQAISDACR 107 (222)
Q Consensus 67 ~~~~vlDlg~G-~G~~~~~la~--~~~~v~gvD~~~~~i~~a~~ 107 (222)
++.++.=+||| .|.-++.-|+ ...+++++|+++.-+++|++
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 47788888887 4444443343 35599999999999998876
No 391
>PRK05650 short chain dehydrogenase; Provisional
Probab=73.21 E-value=28 Score=28.08 Aligned_cols=74 Identities=9% Similarity=0.070 Sum_probs=45.5
Q ss_pred eEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCCCc
Q 043853 70 IVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPKPD 139 (222)
Q Consensus 70 ~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~fD 139 (222)
++|=.| |+|+++..++ +.+.+|+.++.++...+.+...++..+. ++.++.+|+.+... ......+.+|
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG-DGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 455555 4556665544 4466999999998777766665554433 47788888755421 1111123689
Q ss_pred EEEECC
Q 043853 140 IVISDP 145 (222)
Q Consensus 140 ~ii~~p 145 (222)
++|.+.
T Consensus 80 ~lI~~a 85 (270)
T PRK05650 80 VIVNNA 85 (270)
T ss_pred EEEECC
Confidence 998875
No 392
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.19 E-value=20 Score=29.91 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=55.6
Q ss_pred CCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhc------CCCCCC
Q 043853 68 SEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDF------GNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~------~~~~~~ 137 (222)
++.|+=-||-+|. ++..+++.+.+++-+-.....++...+.++..+..+ +.++++|+.+...-. ....+.
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg~ 91 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFGR 91 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcCC
Confidence 7888989988886 444667777777777777778888766666655545 999999986653211 123458
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.|.
T Consensus 92 vDvLVNNA 99 (282)
T KOG1205|consen 92 VDVLVNNA 99 (282)
T ss_pred CCEEEecC
Confidence 99999885
No 393
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=73.14 E-value=5.9 Score=31.81 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCC--eEEEEeCCHHHHHHHHHHH
Q 043853 54 YKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVK--HVYGYEVVPQAISDACRNA 109 (222)
Q Consensus 54 ~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~--~v~gvD~~~~~i~~a~~n~ 109 (222)
+..+.+.++ +.++...+|..-|.|+.+..+.+.++ ++++.|.+|.+.+.|+...
T Consensus 32 ~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 32 LDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred hhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhh
Confidence 344445443 34588999999999999999988766 8899999999998887665
No 394
>PRK06720 hypothetical protein; Provisional
Probab=73.11 E-value=38 Score=25.67 Aligned_cols=77 Identities=21% Similarity=0.195 Sum_probs=46.2
Q ss_pred CCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCCC
Q 043853 68 SEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPKP 138 (222)
Q Consensus 68 ~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~f 138 (222)
++.++-.|.+.|. +...+++.+.+++.+|.++...+.+.+.+...+. .+.++..|+.+... ......+..
T Consensus 16 gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~v~~~~~~~G~i 94 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGG-EALFVSYDMEKQGDWQRVISITLNAFSRI 94 (169)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5677777765543 2224455677999999988777666555544332 36667777654321 111122468
Q ss_pred cEEEECC
Q 043853 139 DIVISDP 145 (222)
Q Consensus 139 D~ii~~p 145 (222)
|+++.+.
T Consensus 95 DilVnnA 101 (169)
T PRK06720 95 DMLFQNA 101 (169)
T ss_pred CEEEECC
Confidence 9999885
No 395
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=72.92 E-value=22 Score=31.33 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=26.2
Q ss_pred CeEEEEecccchhHH--HHhhcCCeEEEEeCCHHHHHHH
Q 043853 69 EIVLDLFCGTGTIGL--TLARWVKHVYGYEVVPQAISDA 105 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~--~la~~~~~v~gvD~~~~~i~~a 105 (222)
++|-=+|.|.-+..+ .+++.+.+|+++|.++..++..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l 42 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTI 42 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence 456667777544443 4556678999999999988764
No 396
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=72.73 E-value=28 Score=30.19 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=50.3
Q ss_pred CCCeEEEEecc-cchhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCG-TGTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G-~G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
+..+|+=+|+| .|..+...+. .+.+|+.+|.++...+.+.... +. .+.....+..++...+ ..+|+||..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g~-~v~~~~~~~~~l~~~l----~~aDvVI~a 237 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---GG-RIHTRYSNAYEIEDAV----KRADLLIGA 237 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---Cc-eeEeccCCHHHHHHHH----ccCCEEEEc
Confidence 34568888887 4444444333 3558999999988766654432 11 1222222222222221 368999987
Q ss_pred CCCCCc-cHH--HHHHHHhCCCCcEEE-EeeC
Q 043853 145 PNRPGM-HMK--LIKFLLKLKAPRIVY-VSCN 172 (222)
Q Consensus 145 pp~~~~-~~~--~~~~l~~l~~~~~v~-~~~~ 172 (222)
.+..+. .+. ..+.+..++++++++ ++++
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 532111 011 133344457776554 4443
No 397
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=72.63 E-value=12 Score=30.82 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=26.9
Q ss_pred CCCeEEEEecccchhHHHHhhcC-------CeEEEEeCCH
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV-------KHVYGYEVVP 99 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~-------~~v~gvD~~~ 99 (222)
+...++|+|||.|.++..++... ..++.||...
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 46799999999999999887643 3788999854
No 398
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.54 E-value=44 Score=29.46 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=43.3
Q ss_pred CCeEEEEecccchhHH--HHhhcCCeEEEEeCCH-HHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 68 SEIVLDLFCGTGTIGL--TLARWVKHVYGYEVVP-QAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~--~la~~~~~v~gvD~~~-~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
+++++=+|+|..+.++ .+++.+.+|+++|.++ ..++...+.+...+ ++++.+|..+-.. +.+|+|+.+
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~------~~~d~vv~~ 75 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG---IELVLGEYPEEFL------EGVDLVVVS 75 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC---CEEEeCCcchhHh------hcCCEEEEC
Confidence 5788888887755444 4445678999999985 33333223333333 4577776654211 368999987
Q ss_pred CC
Q 043853 145 PN 146 (222)
Q Consensus 145 pp 146 (222)
+-
T Consensus 76 ~g 77 (450)
T PRK14106 76 PG 77 (450)
T ss_pred CC
Confidence 63
No 399
>PRK08589 short chain dehydrogenase; Validated
Probab=72.40 E-value=29 Score=28.11 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=43.5
Q ss_pred CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~ 137 (222)
++++|=.|++. +++.. +++.+.+|+.++.+ ..++...+.++..+. ++.++..|+.+.. .......+.
T Consensus 6 ~k~vlItGas~-gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 6 NKVAVITGAST-GIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG-KAKAYHVDISDEQQVKDFASEIKEQFGR 82 (272)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 56677666544 44443 44557799999998 444444444443332 4777788875432 111112236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 83 id~li~~A 90 (272)
T PRK08589 83 VDVLFNNA 90 (272)
T ss_pred cCEEEECC
Confidence 89998875
No 400
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=72.32 E-value=34 Score=27.01 Aligned_cols=77 Identities=13% Similarity=0.117 Sum_probs=47.7
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|+ +|.++..++ +.+.+|+.++.++...+.+...++..+. ++.++.+|+.+... ........
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGG-NAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 456776664 455555444 4466899999998877776666654432 47888888754321 11111135
Q ss_pred CcEEEECCC
Q 043853 138 PDIVISDPN 146 (222)
Q Consensus 138 fD~ii~~pp 146 (222)
.|++|.+..
T Consensus 81 ~d~vi~~ag 89 (250)
T TIGR03206 81 VDVLVNNAG 89 (250)
T ss_pred CCEEEECCC
Confidence 798888763
No 401
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=72.12 E-value=28 Score=27.75 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=48.7
Q ss_pred CCCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFP 136 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~ 136 (222)
+++++|=.|+ +|.++..++ +.+.+++.++.+++.++...+.++..+. ++.++.+|+.+... ......+
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 3677887775 555555443 4567999999998777766666655443 47788888755321 1111123
Q ss_pred CCcEEEECC
Q 043853 137 KPDIVISDP 145 (222)
Q Consensus 137 ~fD~ii~~p 145 (222)
++|.++.+.
T Consensus 88 ~id~vi~~a 96 (256)
T PRK06124 88 RLDILVNNV 96 (256)
T ss_pred CCCEEEECC
Confidence 679998875
No 402
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=72.09 E-value=46 Score=29.08 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=21.9
Q ss_pred ccchhHHHHhh---cCCeEEEEeCCHHHHHHHHH
Q 043853 77 GTGTIGLTLAR---WVKHVYGYEVVPQAISDACR 107 (222)
Q Consensus 77 G~G~~~~~la~---~~~~v~gvD~~~~~i~~a~~ 107 (222)
|.|+.++.+|. .+.+|+++|+++..++.+++
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 55555543332 35689999999999988876
No 403
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=72.00 E-value=23 Score=24.15 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=34.1
Q ss_pred EecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC
Q 043853 74 LFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN 146 (222)
Q Consensus 74 lg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp 146 (222)
+-||+|.-+..++ ....++.++.+|++ +++.+.+..+..... ..+|+|+..++
T Consensus 7 vvCgsG~~TS~m~---------------~~ki~~~l~~~gi~-~~v~~~~~~e~~~~~----~~~D~iv~t~~ 59 (94)
T PRK10310 7 VACGGAVATSTMA---------------AEEIKELCQSHNIP-VELIQCRVNEIETYM----DGVHLICTTAR 59 (94)
T ss_pred EECCCchhHHHHH---------------HHHHHHHHHHCCCe-EEEEEecHHHHhhhc----CCCCEEEECCc
Confidence 5677777555432 23455556667774 788888887764321 35899988876
No 404
>PRK06182 short chain dehydrogenase; Validated
Probab=71.66 E-value=52 Score=26.55 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=41.9
Q ss_pred CCeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
+++++=.| |+|+++..+++ .+.+|++++.++..++.... . +++++.+|+.+... ........
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~---~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVALVTG-ASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----L---GVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----C---CCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 45677666 45666665543 46699999998776543321 1 36677777755421 11111236
Q ss_pred CcEEEECCC
Q 043853 138 PDIVISDPN 146 (222)
Q Consensus 138 fD~ii~~pp 146 (222)
.|+++.+..
T Consensus 75 id~li~~ag 83 (273)
T PRK06182 75 IDVLVNNAG 83 (273)
T ss_pred CCEEEECCC
Confidence 899998863
No 405
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=71.52 E-value=17 Score=31.74 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=46.5
Q ss_pred CeEEEEecc-cchhHH-HHhhcC-CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh--hcCCCCCCCcEEEE
Q 043853 69 EIVLDLFCG-TGTIGL-TLARWV-KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG--DFGNAFPKPDIVIS 143 (222)
Q Consensus 69 ~~vlDlg~G-~G~~~~-~la~~~-~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~~~~~~fD~ii~ 143 (222)
++||=+||| .|.... -+|+.+ .+|+..|.+++.+..+..... ++++..+.|+.+... .+. ..+|+||.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~~al~~li---~~~d~VIn 74 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADVDALVALI---KDFDLVIN 74 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccChHHHHHHH---hcCCEEEE
Confidence 478999995 333333 234444 599999999998888876643 257788888766532 222 35688877
Q ss_pred CCC
Q 043853 144 DPN 146 (222)
Q Consensus 144 ~pp 146 (222)
-.|
T Consensus 75 ~~p 77 (389)
T COG1748 75 AAP 77 (389)
T ss_pred eCC
Confidence 654
No 406
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=71.48 E-value=49 Score=26.15 Aligned_cols=93 Identities=19% Similarity=0.128 Sum_probs=50.9
Q ss_pred CCCeEEEEeccc-chhHHHHhh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 67 GSEIVLDLFCGT-GTIGLTLAR-WVKHVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 67 ~~~~vlDlg~G~-G~~~~~la~-~~~~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
++.+||-.|+|+ |...+.+++ .+.++++++.++...+.+++. +... +.....+...... ......+|+++.
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~--~~~~~~~d~vi~ 207 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELR--LTGGGGADVVID 207 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHH--HhcCCCCCEEEE
Confidence 478999999885 445555554 356999999998877776442 3321 1111111111110 111246999987
Q ss_pred CCCCCCccHHHHHHHHhCCCCcEEE
Q 043853 144 DPNRPGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 144 ~pp~~~~~~~~~~~l~~l~~~~~v~ 168 (222)
..... ......+..+++++.+.
T Consensus 208 ~~~~~---~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 208 AVGGP---ETLAQALRLLRPGGRIV 229 (271)
T ss_pred CCCCH---HHHHHHHHhcccCCEEE
Confidence 64421 23333444456666554
No 407
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=71.18 E-value=26 Score=26.27 Aligned_cols=88 Identities=27% Similarity=0.362 Sum_probs=54.1
Q ss_pred EecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC-
Q 043853 74 LFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP- 148 (222)
Q Consensus 74 lg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~- 148 (222)
+..|+|..+..+++ .+.+|+++--++.-.+. ..+++++.+|+.+... +.......|.|+...+..
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---------~~~~~~~~~d~~d~~~-~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---------SPGVEIIQGDLFDPDS-VKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---------CTTEEEEESCTTCHHH-HHHHHTTSSEEEECCHSTT
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---------ccccccceeeehhhhh-hhhhhhhcchhhhhhhhhc
Confidence 34467777775554 45699999888774444 3469999999977632 111113689988876421
Q ss_pred C---ccHHHHHHHHhCCCCcEEEEee
Q 043853 149 G---MHMKLIKFLLKLKAPRIVYVSC 171 (222)
Q Consensus 149 ~---~~~~~~~~l~~l~~~~~v~~~~ 171 (222)
. ....+++.++..+...+++++.
T Consensus 73 ~~~~~~~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 73 KDVDAAKNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp THHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred ccccccccccccccccccccceeeec
Confidence 1 1233444444456667788776
No 408
>PRK07576 short chain dehydrogenase; Provisional
Probab=70.86 E-value=39 Score=27.24 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=46.0
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~ 137 (222)
++++|=.| |+|+++..++ ..+.+|+.++.++..++...+.+...+. ++.++..|+.+.. .........
T Consensus 9 ~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 9 GKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56777777 4555555443 4566899999988776665555544332 4677788875432 111111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|++|.+.
T Consensus 87 iD~vi~~a 94 (264)
T PRK07576 87 IDVLVSGA 94 (264)
T ss_pred CCEEEECC
Confidence 89998765
No 409
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=70.67 E-value=31 Score=27.60 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=49.4
Q ss_pred CCeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.| |+|.++..+++ .+.+|+.++.++...+...+.+...+. ++.++.+|+.+... ........
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~~~ 89 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERFGH 89 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 56777777 56677766554 466999999998877777666654432 47788888865321 11111136
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|.++.+.
T Consensus 90 id~vi~~a 97 (259)
T PRK08213 90 VDILVNNA 97 (259)
T ss_pred CCEEEECC
Confidence 89998875
No 410
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=70.60 E-value=36 Score=27.12 Aligned_cols=76 Identities=12% Similarity=0.084 Sum_probs=45.1
Q ss_pred CeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHH-cCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 69 EIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKL-NNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~-~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
+++|=.|+ +|.++..+ ++.+.+++.+|.++...+...+.+.. .+-.++.++..|+.+... ........
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45676774 55555544 44567999999988766655544433 221247888888765321 11111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 82 id~vv~~a 89 (259)
T PRK12384 82 VDLLVYNA 89 (259)
T ss_pred CCEEEECC
Confidence 89988875
No 411
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=70.60 E-value=61 Score=29.31 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=62.7
Q ss_pred CCCeEEEEecccchhHHHHhhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEE
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVK---HVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVIS 143 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~---~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~ 143 (222)
.-..|+|..+|.|+|+.+|....- +|+-++ .+..+... ...|+-. .--|+.+...++. .+||+|=+
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~-~~ntL~vI----ydRGLIG---~yhDWCE~fsTYP---RTYDLlHA 433 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVS-GPNTLPVI----YDRGLIG---VYHDWCEAFSTYP---RTYDLLHA 433 (506)
T ss_pred ceeeeeeecccccHHHHHhccCCceEEEecccC-CCCcchhh----hhcccch---hccchhhccCCCC---cchhheeh
Confidence 456899999999999999986432 444442 22333222 2223311 1223333333332 47898844
Q ss_pred CC------CCCCccHHHHHHHHhCCCCcEEEEeeCccchHhhHHHhhccCCCCccCCCeEEeEee
Q 043853 144 DP------NRPGMHMKLIKFLLKLKAPRIVYVSCNPATCARDLDYLCHGVGDQNIKGCYKLKSLQ 202 (222)
Q Consensus 144 ~p------p~~~~~~~~~~~l~~l~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 202 (222)
+- .+-.+..-+++.=+-|+|+|.+++-... .+...++.+++ .-.|+.....
T Consensus 434 ~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~-~vl~~v~~i~~-------~lrW~~~~~d 490 (506)
T PF03141_consen 434 DGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV-DVLEKVKKIAK-------SLRWEVRIHD 490 (506)
T ss_pred hhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH-HHHHHHHHHHH-------hCcceEEEEe
Confidence 42 2333322233333338999999987655 33444444443 4467666443
No 412
>PRK05876 short chain dehydrogenase; Provisional
Probab=70.47 E-value=29 Score=28.33 Aligned_cols=76 Identities=17% Similarity=0.089 Sum_probs=47.3
Q ss_pred CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|++ |+++..+ ++.+.+|+.++.++..++.+.+.++..+. ++.++..|+.+... ......+.
T Consensus 6 ~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (275)
T PRK05876 6 GRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLLGH 83 (275)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 5677766654 5555544 44567899999998777766555554443 47788888765421 11111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|++|.+.
T Consensus 84 id~li~nA 91 (275)
T PRK05876 84 VDVVFSNA 91 (275)
T ss_pred CCEEEECC
Confidence 89998876
No 413
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=70.40 E-value=42 Score=31.91 Aligned_cols=91 Identities=15% Similarity=0.065 Sum_probs=56.8
Q ss_pred CeEEEEecccch--hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHc-------C-C---------CcEEEEeCchhchhh
Q 043853 69 EIVLDLFCGTGT--IGLTLARWVKHVYGYEVVPQAISDACRNAKLN-------N-I---------SNATFVQGDLNKIGG 129 (222)
Q Consensus 69 ~~vlDlg~G~G~--~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~-------~-~---------~~v~~~~~d~~~~~~ 129 (222)
.+|.=+|+|+=+ ++..++..+.+|+-+|.+++.++.+++.+... + + .++++. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG--- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH---
Confidence 578899999744 44456677889999999999998877665432 1 1 112221 12211
Q ss_pred hcCCCCCCCcEEEECCC-CCCccHHHHHHHHhCCCCcEEE
Q 043853 130 DFGNAFPKPDIVISDPN-RPGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 130 ~~~~~~~~fD~ii~~pp-~~~~~~~~~~~l~~l~~~~~v~ 168 (222)
....|+||=.-| ...+...+...+....+...++
T Consensus 390 -----~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~il 424 (715)
T PRK11730 390 -----FERVDVVVEAVVENPKVKAAVLAEVEQKVREDTIL 424 (715)
T ss_pred -----hcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEE
Confidence 135788886655 4466677777777654444444
No 414
>PRK10537 voltage-gated potassium channel; Provisional
Probab=70.37 E-value=30 Score=30.33 Aligned_cols=95 Identities=5% Similarity=-0.038 Sum_probs=51.8
Q ss_pred CeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 69 EIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
..++=+|+ |..+..++ +.+.+++.+|.++. +.. . .++..++.+|..+...-.....++.+.+++.
T Consensus 241 ~HvII~G~--g~lg~~v~~~L~~~g~~vvVId~d~~--~~~----~---~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 241 DHFIICGH--SPLAINTYLGLRQRGQAVTVIVPLGL--EHR----L---PDDADLIPGDSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CeEEEECC--ChHHHHHHHHHHHCCCCEEEEECchh--hhh----c---cCCCcEEEeCCCCHHHHHhcCcccCCEEEEc
Confidence 45655554 45554443 33558888897621 111 1 1246789999876432111222467888876
Q ss_pred CCCCCccHHHHHHHHhCCCCcEEEEeeCcc
Q 043853 145 PNRPGMHMKLIKFLLKLKAPRIVYVSCNPA 174 (222)
Q Consensus 145 pp~~~~~~~~~~~l~~l~~~~~v~~~~~~~ 174 (222)
.+.......+...++.++|+..++..++..
T Consensus 310 t~dD~~Nl~ivL~ar~l~p~~kIIa~v~~~ 339 (393)
T PRK10537 310 RDNDADNAFVVLAAKEMSSDVKTVAAVNDS 339 (393)
T ss_pred CCChHHHHHHHHHHHHhCCCCcEEEEECCH
Confidence 654333334444566677776666555543
No 415
>PRK06197 short chain dehydrogenase; Provisional
Probab=70.20 E-value=48 Score=27.40 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=47.2
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHc-CCCcEEEEeCchhchhh------hcCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLN-NISNATFVQGDLNKIGG------DFGNAFP 136 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~-~~~~v~~~~~d~~~~~~------~~~~~~~ 136 (222)
++++|=.| |+|+++..++ +.+.+++.++.++...+.+.+.+... +-.++.++..|+.+... .......
T Consensus 16 ~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 94 (306)
T PRK06197 16 GRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP 94 (306)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence 56777555 4566665554 44668888888877766665555432 22347888888865531 1111223
Q ss_pred CCcEEEECC
Q 043853 137 KPDIVISDP 145 (222)
Q Consensus 137 ~fD~ii~~p 145 (222)
.+|++|.+.
T Consensus 95 ~iD~li~nA 103 (306)
T PRK06197 95 RIDLLINNA 103 (306)
T ss_pred CCCEEEECC
Confidence 689998875
No 416
>PRK08303 short chain dehydrogenase; Provisional
Probab=70.09 E-value=29 Score=28.95 Aligned_cols=76 Identities=17% Similarity=0.078 Sum_probs=43.9
Q ss_pred CCeEEEEecccchhHHH----HhhcCCeEEEEeCCH----------HHHHHHHHHHHHcCCCcEEEEeCchhchh-----
Q 043853 68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVP----------QAISDACRNAKLNNISNATFVQGDLNKIG----- 128 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~----------~~i~~a~~n~~~~~~~~v~~~~~d~~~~~----- 128 (222)
++++|-.|++.| ++.+ +++.+.+|+.++.+. +.++.+.+.+...+. ++.++..|+.+..
T Consensus 8 ~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 8 GKVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGG-RGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHH
Confidence 577888886554 4443 444567888888762 334444444444332 3677888875542
Q ss_pred -hhcCCCCCCCcEEEECC
Q 043853 129 -GDFGNAFPKPDIVISDP 145 (222)
Q Consensus 129 -~~~~~~~~~fD~ii~~p 145 (222)
.......+..|++|.|.
T Consensus 86 ~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 86 VERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHcCCccEEEECC
Confidence 11111224689998876
No 417
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=70.04 E-value=64 Score=27.27 Aligned_cols=91 Identities=14% Similarity=0.061 Sum_probs=48.5
Q ss_pred CCCeEEEEecc-cchhHHHHhhc-CCeEEEEeC---CHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEE
Q 043853 67 GSEIVLDLFCG-TGTIGLTLARW-VKHVYGYEV---VPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIV 141 (222)
Q Consensus 67 ~~~~vlDlg~G-~G~~~~~la~~-~~~v~gvD~---~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~i 141 (222)
++.+|+=.|+| .|.+++.+++. +.++++++. ++.-.+.+++ .|.+.+.....+..+ .. ....+|++
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~~v~~~~~~~~~-~~----~~~~~d~v 242 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGATYVNSSKTPVAE-VK----LVGEFDLI 242 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCEEecCCccchhh-hh----hcCCCCEE
Confidence 46788888875 34444555553 448999987 5666665543 454322111112211 00 11368988
Q ss_pred EECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853 142 ISDPNRPGMHMKLIKFLLKLKAPRIVYV 169 (222)
Q Consensus 142 i~~pp~~~~~~~~~~~l~~l~~~~~v~~ 169 (222)
|-... ....+.+.+..++++|.+.+
T Consensus 243 id~~g---~~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 243 IEATG---VPPLAFEALPALAPNGVVIL 267 (355)
T ss_pred EECcC---CHHHHHHHHHHccCCcEEEE
Confidence 77543 11234445566777776543
No 418
>PRK05993 short chain dehydrogenase; Provisional
Probab=69.97 E-value=58 Score=26.43 Aligned_cols=70 Identities=13% Similarity=0.021 Sum_probs=42.2
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhc-CCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDF-GNAFP 136 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~-~~~~~ 136 (222)
++++|=.|+ +|+++..++ +.+.+|++++.++..++.... . +++++.+|+.+.. ... ....+
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~---~~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----E---GLEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----C---CceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 456776775 566665544 446699999999876654432 1 3567777775532 111 00113
Q ss_pred CCcEEEECC
Q 043853 137 KPDIVISDP 145 (222)
Q Consensus 137 ~fD~ii~~p 145 (222)
..|+++.+.
T Consensus 76 ~id~li~~A 84 (277)
T PRK05993 76 RLDALFNNG 84 (277)
T ss_pred CccEEEECC
Confidence 689998874
No 419
>PLN00016 RNA-binding protein; Provisional
Probab=69.64 E-value=18 Score=31.08 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=56.7
Q ss_pred CCeEEEE---ecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHH----HHHHcCCCcEEEEeCchhchhhhcCCCCC
Q 043853 68 SEIVLDL---FCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACR----NAKLNNISNATFVQGDLNKIGGDFGNAFP 136 (222)
Q Consensus 68 ~~~vlDl---g~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~----n~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 136 (222)
.++||=+ |.|+|.++..+++ .+.+|++++.++........ ........+++++.+|..+....+. ..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~--~~ 129 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVA--GA 129 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhc--cC
Confidence 4578866 2477777765543 46699999987643221110 0011111247899999987433221 13
Q ss_pred CCcEEEECCCCC-CccHHHHHHHHhCCCCcEEEEee
Q 043853 137 KPDIVISDPNRP-GMHMKLIKFLLKLKAPRIVYVSC 171 (222)
Q Consensus 137 ~fD~ii~~pp~~-~~~~~~~~~l~~l~~~~~v~~~~ 171 (222)
.+|+|+...... .....+++.+...+.+.++++++
T Consensus 130 ~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS 165 (378)
T PLN00016 130 GFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS 165 (378)
T ss_pred CccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 689988764321 11245555555455567787775
No 420
>PRK07063 short chain dehydrogenase; Provisional
Probab=69.58 E-value=34 Score=27.32 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=48.2
Q ss_pred CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEeCchhchhh------hcCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNI-SNATFVQGDLNKIGG------DFGNAFP 136 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~-~~v~~~~~d~~~~~~------~~~~~~~ 136 (222)
++++|=.|++ |+++.. +++.+.+|+.++.++...+...+.+...+. .++.++..|+.+... ......+
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5678877765 444443 445567999999998887777666654211 247788888755321 1111123
Q ss_pred CCcEEEECC
Q 043853 137 KPDIVISDP 145 (222)
Q Consensus 137 ~fD~ii~~p 145 (222)
.+|+++.+.
T Consensus 86 ~id~li~~a 94 (260)
T PRK07063 86 PLDVLVNNA 94 (260)
T ss_pred CCcEEEECC
Confidence 689998875
No 421
>PRK08251 short chain dehydrogenase; Provisional
Probab=69.48 E-value=44 Score=26.35 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=47.8
Q ss_pred CeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcC-CCcEEEEeCchhchhh------hcCCCCCC
Q 043853 69 EIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNN-ISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~-~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
+++|=.| |+|+++..+++ .+.+++.++.++...+.....+.... -.++++..+|+.+... ......+.
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4566566 56777765553 45699999999887776665554332 1248888888865421 11112246
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 82 id~vi~~a 89 (248)
T PRK08251 82 LDRVIVNA 89 (248)
T ss_pred CCEEEECC
Confidence 89998875
No 422
>PRK05866 short chain dehydrogenase; Provisional
Probab=69.02 E-value=33 Score=28.35 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=47.8
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|+ +|+++..++ +.+.+|+.++.+++.++...+.+...+. ++.++.+|+.+... ......+.
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 466776665 455555444 4567999999998877776666654433 37788888765321 11111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 118 id~li~~A 125 (293)
T PRK05866 118 VDILINNA 125 (293)
T ss_pred CCEEEECC
Confidence 89998875
No 423
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=69.00 E-value=35 Score=27.80 Aligned_cols=72 Identities=22% Similarity=0.244 Sum_probs=40.2
Q ss_pred HHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHHH
Q 043853 82 GLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFLL 159 (222)
Q Consensus 82 ~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l~ 159 (222)
+.++.+.+ .+|+|+|.++..++.|++. |+. .-...+ .+.. ..+|+|++.-|-.. ...+++.+.
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~--~~~~~~-~~~~-------~~~DlvvlavP~~~-~~~~l~~~~ 66 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GII--DEASTD-IEAV-------EDADLVVLAVPVSA-IEDVLEEIA 66 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSS--SEEESH-HHHG-------GCCSEEEE-S-HHH-HHHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCe--eeccCC-HhHh-------cCCCEEEEcCCHHH-HHHHHHHhh
Confidence 45565555 5999999999998888642 442 222222 2222 25799887766332 356666665
Q ss_pred h-CCCCcEEE
Q 043853 160 K-LKAPRIVY 168 (222)
Q Consensus 160 ~-l~~~~~v~ 168 (222)
. ++++.++.
T Consensus 67 ~~~~~~~iv~ 76 (258)
T PF02153_consen 67 PYLKPGAIVT 76 (258)
T ss_dssp CGS-TTSEEE
T ss_pred hhcCCCcEEE
Confidence 5 55666554
No 424
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=68.74 E-value=64 Score=29.02 Aligned_cols=95 Identities=17% Similarity=0.095 Sum_probs=51.5
Q ss_pred EEEEecccch--hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC
Q 043853 71 VLDLFCGTGT--IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP 148 (222)
Q Consensus 71 vlDlg~G~G~--~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~ 148 (222)
|-=+|.|.-+ ++..+++.+.+|++.|.++..++...+.....+. ++. ...+..++...+ ...|+|++.-|..
T Consensus 4 IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~-~i~-~~~s~~e~v~~l----~~~d~Iil~v~~~ 77 (470)
T PTZ00142 4 IGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT-RVK-GYHTLEELVNSL----KKPRKVILLIKAG 77 (470)
T ss_pred EEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC-cce-ecCCHHHHHhcC----CCCCEEEEEeCCh
Confidence 4445655433 3335556677999999999998877664332232 122 233444444321 2467666553323
Q ss_pred CccHHHHHHHHh-CCCCcEEEEeeC
Q 043853 149 GMHMKLIKFLLK-LKAPRIVYVSCN 172 (222)
Q Consensus 149 ~~~~~~~~~l~~-l~~~~~v~~~~~ 172 (222)
.....+++.+.. +.++.++ +++.
T Consensus 78 ~~v~~vi~~l~~~L~~g~iI-ID~g 101 (470)
T PTZ00142 78 EAVDETIDNLLPLLEKGDII-IDGG 101 (470)
T ss_pred HHHHHHHHHHHhhCCCCCEE-EECC
Confidence 334555565554 5666655 4553
No 425
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=68.45 E-value=49 Score=26.30 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=46.7
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.| |+|+++..++ +.+.+++.++.++..++.....++..+. ++.++..|+.+... ........
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 86 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTHKQEVEAAIEHIEKDIGP 86 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 56677666 4555555444 4467999999998777666555554332 46777788754321 11112246
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|+++.+.
T Consensus 87 id~vi~~a 94 (254)
T PRK08085 87 IDVLINNA 94 (254)
T ss_pred CCEEEECC
Confidence 89998876
No 426
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=68.01 E-value=75 Score=26.94 Aligned_cols=95 Identities=13% Similarity=0.060 Sum_probs=50.4
Q ss_pred CCCeEEEEecc-cchhHHHHhhc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 67 GSEIVLDLFCG-TGTIGLTLARW-VK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 67 ~~~~vlDlg~G-~G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
++++||=.||| .|..++.+|+. +. +++++|.++...+.+++ .|.+. +.....+..+...... ....+|+++
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~-~~~g~d~vi 250 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT-GGFGADVVI 250 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh-CCCCCCEEE
Confidence 47788888764 23344455553 43 59999999988888754 35432 2222223322221111 123589887
Q ss_pred ECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853 143 SDPNRPGMHMKLIKFLLKLKAPRIVYV 169 (222)
Q Consensus 143 ~~pp~~~~~~~~~~~l~~l~~~~~v~~ 169 (222)
-.. +-...+...+..++++|.+.+
T Consensus 251 d~~---g~~~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 251 DAV---GRPETYKQAFYARDLAGTVVL 274 (358)
T ss_pred ECC---CCHHHHHHHHHHhccCCEEEE
Confidence 543 212334445555676666543
No 427
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=67.52 E-value=35 Score=22.93 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=48.8
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCC-CCccHHHHHHHHhCCCC-cEEEE
Q 043853 92 VYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNR-PGMHMKLIKFLLKLKAP-RIVYV 169 (222)
Q Consensus 92 v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~-~~~~~~~~~~l~~l~~~-~~v~~ 169 (222)
|.-+|-++...+..++.++..++..+. ...+..+....+.. ..+|+++++-.. ..-...+++.++...+. .++++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~-~~~~~~~~~~~~~~--~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~ 77 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVT-TASSGEEALELLKK--HPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVV 77 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEE-EESSHHHHHHHHHH--STESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEE-EECCHHHHHHHhcc--cCceEEEEEeeeccccccccccccccccccccEEEe
Confidence 456788999999999999877663333 34455454433322 369999998531 23456788888776544 44444
Q ss_pred ee
Q 043853 170 SC 171 (222)
Q Consensus 170 ~~ 171 (222)
+.
T Consensus 78 t~ 79 (112)
T PF00072_consen 78 TD 79 (112)
T ss_dssp ES
T ss_pred cC
Confidence 43
No 428
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=67.43 E-value=7.8 Score=33.83 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=23.2
Q ss_pred ccchhHH----HHhhcCCeEEEEeCCHHHHHHHHH
Q 043853 77 GTGTIGL----TLARWVKHVYGYEVVPQAISDACR 107 (222)
Q Consensus 77 G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~ 107 (222)
|+|+.++ .+|+.+.+|+++|+++.-++..++
T Consensus 7 GtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~ 41 (414)
T COG1004 7 GTGYVGLVTGACLAELGHEVVCVDIDESKVELLNK 41 (414)
T ss_pred CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhC
Confidence 4555443 667778899999999998877654
No 429
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=67.37 E-value=36 Score=28.03 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=46.0
Q ss_pred EEEEeccc--chhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCC
Q 043853 71 VLDLFCGT--GTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRP 148 (222)
Q Consensus 71 vlDlg~G~--G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~ 148 (222)
|.=+|+|. |.++..+++.+.+|+++|.++..++.+.+. +. +.....+. +.. ...|+|+...|..
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~--~~~~~~~~-~~~-------~~aDlVilavp~~ 68 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL--VDEASTDL-SLL-------KDCDLVILALPIG 68 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC--cccccCCH-hHh-------cCCCEEEEcCCHH
Confidence 44466663 334445555566999999999888777542 22 11111121 111 2579988877633
Q ss_pred CccHHHHHHHHh-CCCCcEEEEeeC
Q 043853 149 GMHMKLIKFLLK-LKAPRIVYVSCN 172 (222)
Q Consensus 149 ~~~~~~~~~l~~-l~~~~~v~~~~~ 172 (222)
.. .++.+.+.. ++++ .++.++.
T Consensus 69 ~~-~~~~~~l~~~l~~~-~ii~d~~ 91 (279)
T PRK07417 69 LL-LPPSEQLIPALPPE-AIVTDVG 91 (279)
T ss_pred HH-HHHHHHHHHhCCCC-cEEEeCc
Confidence 22 344455544 3444 4444443
No 430
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=67.29 E-value=35 Score=27.85 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=51.7
Q ss_pred CCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCCC
Q 043853 68 SEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPKP 138 (222)
Q Consensus 68 ~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~f 138 (222)
++.++=-|+.+|. .+..+++.+.+++...-..+.++.....+.. ..+.....|+.+.. ..+.....++
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~---~~~~~~~~DVtD~~~~~~~i~~~~~~~g~i 82 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA---GAALALALDVTDRAAVEAAIEALPEEFGRI 82 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc---CceEEEeeccCCHHHHHHHHHHHHHhhCcc
Confidence 4667777777775 2335666788999999999988888776653 24677777776552 2233344589
Q ss_pred cEEEECC
Q 043853 139 DIVISDP 145 (222)
Q Consensus 139 D~ii~~p 145 (222)
|+++.|.
T Consensus 83 DiLvNNA 89 (246)
T COG4221 83 DILVNNA 89 (246)
T ss_pred cEEEecC
Confidence 9999885
No 431
>CHL00194 ycf39 Ycf39; Provisional
Probab=67.15 E-value=50 Score=27.54 Aligned_cols=90 Identities=23% Similarity=0.217 Sum_probs=50.8
Q ss_pred EecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCC-C-
Q 043853 74 LFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPN-R- 147 (222)
Q Consensus 74 lg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp-~- 147 (222)
+..|+|.++..+++ .+.+|+++..++...... .. .+++++.+|+.+... +.......|+|+.-.+ .
T Consensus 5 VtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l----~~---~~v~~v~~Dl~d~~~-l~~al~g~d~Vi~~~~~~~ 76 (317)
T CHL00194 5 VIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL----KE---WGAELVYGDLSLPET-LPPSFKGVTAIIDASTSRP 76 (317)
T ss_pred EECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH----hh---cCCEEEECCCCCHHH-HHHHHCCCCEEEECCCCCC
Confidence 45578888876654 356899998876432211 11 247899999866421 1111135788876432 1
Q ss_pred CC---c-------cHHHHHHHHhCCCCcEEEEee
Q 043853 148 PG---M-------HMKLIKFLLKLKAPRIVYVSC 171 (222)
Q Consensus 148 ~~---~-------~~~~~~~l~~l~~~~~v~~~~ 171 (222)
.. . ...+++.+...+-..++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 77 SDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 10 0 134455555555567888776
No 432
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.10 E-value=54 Score=25.70 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=47.4
Q ss_pred CCeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
+.+++=.| |+|+++..+++ .+.+|+.++.++...+.....+...+. ++.++..|+.+... ......+.
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGV-KVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 45677777 46777765543 466999999998776665555543332 48888888755421 11111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 85 id~vi~~a 92 (239)
T PRK07666 85 IDILINNA 92 (239)
T ss_pred ccEEEEcC
Confidence 89998875
No 433
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.09 E-value=13 Score=28.85 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=44.7
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCch---hchhhhcCCCCCCCcEEEECCCCCCcc--HHHHHHHHhCCCCc
Q 043853 91 HVYGYEVVPQAISDACRNAKLNNISNATFVQGDL---NKIGGDFGNAFPKPDIVISDPNRPGMH--MKLIKFLLKLKAPR 165 (222)
Q Consensus 91 ~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~---~~~~~~~~~~~~~fD~ii~~pp~~~~~--~~~~~~l~~l~~~~ 165 (222)
+|+-.|.+... ...| -+|+.=|. .+++..+. ..||+|++|||.-+.. .+....++.+..+.
T Consensus 100 ~v~lfEfDkRF--------e~yg---~eFvfYDyN~p~dlp~~lk---~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~ 165 (217)
T KOG3350|consen 100 QVYLFEFDKRF--------ELYG---TEFVFYDYNCPLDLPDELK---AHFDIIVADPPFLSEECLAKTSETIKRLQRNQ 165 (217)
T ss_pred eEEEEEehhhH--------Hhcc---ceeEEeccCCCCCCHHHHH---hcccEEEeCCccccchhhhhhHHHHHHHhcCC
Confidence 67777777432 2222 24444443 33333332 3699999999965443 44455566655443
Q ss_pred EEEEeeCccchHhhHHHhh
Q 043853 166 IVYVSCNPATCARDLDYLC 184 (222)
Q Consensus 166 ~v~~~~~~~~~~~~~~~l~ 184 (222)
.-.+.|....+..-++.++
T Consensus 166 ~kvilCtGeimee~~s~~l 184 (217)
T KOG3350|consen 166 KKVILCTGEIMEEWASALL 184 (217)
T ss_pred ceEEEechhHhHHHHHHHh
Confidence 3444666666666665543
No 434
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.92 E-value=38 Score=27.05 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=42.3
Q ss_pred CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|++ |+++.. +++.+.+|+.++.++. +.+.+.++..+. ++.++..|+.+... ......++
T Consensus 8 ~k~~lItGas-~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 8 GKVAIITGCN-TGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGR-KFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCC-eEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 6788877765 444444 4455678888876532 233333433332 47788888755431 11111246
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 84 iD~lv~~a 91 (251)
T PRK12481 84 IDILINNA 91 (251)
T ss_pred CCEEEECC
Confidence 89998875
No 435
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.38 E-value=44 Score=26.68 Aligned_cols=75 Identities=23% Similarity=0.224 Sum_probs=43.4
Q ss_pred CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|++.| ++. .+++.+.+++.++.+ ...+.+.+.+...+ .++.++.+|+.+... ......+.
T Consensus 15 ~k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 91 (258)
T PRK06935 15 GKVAIVTGGNTG-LGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG-RKVTFVQVDLTKPESAEKVVKEALEEFGK 91 (258)
T ss_pred CCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 567777776544 444 344556788888877 33444444444433 247888888765321 11111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|+++.+.
T Consensus 92 id~li~~a 99 (258)
T PRK06935 92 IDILVNNA 99 (258)
T ss_pred CCEEEECC
Confidence 89988865
No 436
>PLN02740 Alcohol dehydrogenase-like
Probab=66.33 E-value=85 Score=26.95 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=28.0
Q ss_pred CCCeEEEEecc-cchhHHHHhhc-CC-eEEEEeCCHHHHHHHHH
Q 043853 67 GSEIVLDLFCG-TGTIGLTLARW-VK-HVYGYEVVPQAISDACR 107 (222)
Q Consensus 67 ~~~~vlDlg~G-~G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~ 107 (222)
++++||=.|+| .|..++.+|+. +. +|+++|.++..++.+++
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 47788888764 33333444543 44 69999999988888854
No 437
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=66.23 E-value=27 Score=24.18 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECCCCCCccHHHHHHH
Q 043853 101 AISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDPNRPGMHMKLIKFL 158 (222)
Q Consensus 101 ~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~~~~~~~~~~~l 158 (222)
+.+..++.++..|++ +++......+..... +.+|++++.|.-+-...++.+..
T Consensus 16 la~km~~~a~~~gi~-~~i~a~~~~e~~~~~----~~~Dvill~PQv~~~~~~i~~~~ 68 (99)
T cd05565 16 LANALNKGAKERGVP-LEAAAGAYGSHYDMI----PDYDLVILAPQMASYYDELKKDT 68 (99)
T ss_pred HHHHHHHHHHHCCCc-EEEEEeeHHHHHHhc----cCCCEEEEcChHHHHHHHHHHHh
Confidence 345556666777884 888888888876542 36999999986333333333333
No 438
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=66.22 E-value=15 Score=28.56 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=14.3
Q ss_pred hCCCCcEEEEeeCccchHh
Q 043853 160 KLKAPRIVYVSCNPATCAR 178 (222)
Q Consensus 160 ~l~~~~~v~~~~~~~~~~~ 178 (222)
.|+++|.+++.++......
T Consensus 45 vLk~~g~~~i~~~~~~~~~ 63 (231)
T PF01555_consen 45 VLKPGGSIFIFIDDREIAG 63 (231)
T ss_dssp HEEEEEEEEEEE-CCEECT
T ss_pred hcCCCeeEEEEecchhhhH
Confidence 3799999999988766654
No 439
>PRK07774 short chain dehydrogenase; Provisional
Probab=66.17 E-value=52 Score=25.97 Aligned_cols=76 Identities=17% Similarity=0.172 Sum_probs=46.2
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.| |+|+++..++ +.+.+++.++.++...+...+.+...+ .++.++..|+.+... ......+.
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSDPDSAKAMADATVSAFGG 83 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 45677666 5666666555 446799999998776666555554322 246677888765431 11111135
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|++|.+.
T Consensus 84 id~vi~~a 91 (250)
T PRK07774 84 IDYLVNNA 91 (250)
T ss_pred CCEEEECC
Confidence 89998764
No 440
>PRK10904 DNA adenine methylase; Provisional
Probab=66.07 E-value=9.2 Score=31.59 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHH
Q 043853 52 VLYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAI 102 (222)
Q Consensus 52 ~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i 102 (222)
.++..+..++. ...+.+|++||.|.+.+.+.. .+++--|+++..+
T Consensus 16 ~l~~~i~~~~P----~~~~yvEPF~GggaV~l~~~~--~~~ilND~n~~Li 60 (271)
T PRK10904 16 PLLDDIKRHLP----KGECLIEPFVGAGSVFLNTDF--SRYILADINSDLI 60 (271)
T ss_pred HHHHHHHHhCC----CCCcEEeccCCcceeeEecCC--CeEEEEeCCHHHH
Confidence 34445555542 236899999999999886532 4567779998875
No 441
>PRK08703 short chain dehydrogenase; Provisional
Probab=65.90 E-value=37 Score=26.74 Aligned_cols=57 Identities=11% Similarity=-0.035 Sum_probs=36.7
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchh
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLN 125 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~ 125 (222)
+++++=.|+ +|+++..++ +.+.+|+.++.++...+.....+...+...+.+...|+.
T Consensus 6 ~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~ 66 (239)
T PRK08703 6 DKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLM 66 (239)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeec
Confidence 567888885 566665444 446689999999887776666655443333455555553
No 442
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.87 E-value=39 Score=27.16 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=44.1
Q ss_pred CCCeEEEEecccc-hhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCC
Q 043853 67 GSEIVLDLFCGTG-TIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAF 135 (222)
Q Consensus 67 ~~~~vlDlg~G~G-~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~ 135 (222)
.++.+|=.|+++| +++.+++ +.+.+|+.++.++...+.+++..+.. ..+.++..|+.+.. .......
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL--DAPIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh--ccceEEecCcCCHHHHHHHHHHHHHHc
Confidence 3678899998763 6655444 45678888888765433333333322 22456667765432 1111122
Q ss_pred CCCcEEEECC
Q 043853 136 PKPDIVISDP 145 (222)
Q Consensus 136 ~~fD~ii~~p 145 (222)
+..|+++.|.
T Consensus 87 g~ld~lv~nA 96 (258)
T PRK07533 87 GRLDFLLHSI 96 (258)
T ss_pred CCCCEEEEcC
Confidence 4689998875
No 443
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=65.86 E-value=50 Score=26.47 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=42.1
Q ss_pred CCeEEEEecccchhHH----HHhhcCCeEEEEe-CCHHHHHHHHHHHHH-cCCCcEEEEeCchhchh------hhcCCCC
Q 043853 68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYE-VVPQAISDACRNAKL-NNISNATFVQGDLNKIG------GDFGNAF 135 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD-~~~~~i~~a~~n~~~-~~~~~v~~~~~d~~~~~------~~~~~~~ 135 (222)
++++|=.|++. +++. .+++.+.+|+.+. .+++.++...+.++. .+. ++.++..|+.+.. .......
T Consensus 8 ~k~vlItGas~-gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (260)
T PRK08416 8 GKTLVISGGTR-GIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGI-KAKAYPLNILEPETYKELFKKIDEDF 85 (260)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 56777666554 4444 4445566887764 355555444433332 232 4788888886542 1111122
Q ss_pred CCCcEEEECC
Q 043853 136 PKPDIVISDP 145 (222)
Q Consensus 136 ~~fD~ii~~p 145 (222)
+.+|+++.+.
T Consensus 86 g~id~lv~nA 95 (260)
T PRK08416 86 DRVDFFISNA 95 (260)
T ss_pred CCccEEEECc
Confidence 4689998875
No 444
>PRK07035 short chain dehydrogenase; Provisional
Probab=65.68 E-value=44 Score=26.48 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=45.8
Q ss_pred CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|+++| ++. .+++.+.+|+.++.++...+...+.+...+. ++.++..|+.+... ........
T Consensus 8 ~k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 85 (252)
T PRK07035 8 GKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGG-KAEALACHIGEMEQIDALFAHIRERHGR 85 (252)
T ss_pred CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 456776775544 444 3444567999999998877766666654432 36677777754421 11111135
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|+++.+.
T Consensus 86 id~li~~a 93 (252)
T PRK07035 86 LDILVNNA 93 (252)
T ss_pred CCEEEECC
Confidence 89988765
No 445
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=65.64 E-value=77 Score=26.20 Aligned_cols=103 Identities=12% Similarity=0.070 Sum_probs=61.4
Q ss_pred CCeEEEEecccchhHHHH----hhcC--CeEEEEeCCHHHHHHHHHHHHH--cCCCcEEEEeCchhchhhhcCCCCCCCc
Q 043853 68 SEIVLDLFCGTGTIGLTL----ARWV--KHVYGYEVVPQAISDACRNAKL--NNISNATFVQGDLNKIGGDFGNAFPKPD 139 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~l----a~~~--~~v~gvD~~~~~i~~a~~n~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~fD 139 (222)
+...+|+|+|+-.-+..+ +..+ ...+.+|+|...++...+-+.. .+++ +.-+.+|.......+.+.. .==
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~-v~~l~~~~~~~La~~~~~~-~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE-VNALCGDYELALAELPRGG-RRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe-EeehhhhHHHHHhcccCCC-eEE
Confidence 678999999988866533 3333 3899999998877655444432 2332 7778888876665544221 212
Q ss_pred EEEECCCCC----CccHHHHHHHHh-CCCCcEEEEeeC
Q 043853 140 IVISDPNRP----GMHMKLIKFLLK-LKAPRIVYVSCN 172 (222)
Q Consensus 140 ~ii~~pp~~----~~~~~~~~~l~~-l~~~~~v~~~~~ 172 (222)
+++....-. +.-..++..++. +.||..+.+-.+
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 334433222 222455555654 678887776653
No 446
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.64 E-value=44 Score=26.14 Aligned_cols=76 Identities=12% Similarity=0.079 Sum_probs=46.5
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh------cCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD------FGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 137 (222)
+++++=.|++ |.++..++ +.+.+|++++.++...+.+.+..... .+++++.+|+.+...- .....+.
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 5678888875 55555444 34669999999988776664444432 2478888887653211 0101135
Q ss_pred CcEEEECCC
Q 043853 138 PDIVISDPN 146 (222)
Q Consensus 138 fD~ii~~pp 146 (222)
.|.++.+..
T Consensus 82 id~ii~~ag 90 (238)
T PRK05786 82 IDGLVVTVG 90 (238)
T ss_pred CCEEEEcCC
Confidence 788887753
No 447
>PRK06914 short chain dehydrogenase; Provisional
Probab=65.42 E-value=43 Score=27.06 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=47.3
Q ss_pred CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEeCchhchhhh-----cCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNIS-NATFVQGDLNKIGGD-----FGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~-~v~~~~~d~~~~~~~-----~~~~~~~ 137 (222)
++.+|=.| |+|+++..+ ++.+.+|++++.++...+...+.....+.+ +++++.+|+.+...- .....+.
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 34566666 445555544 445679999999887776666555544432 488888888664311 1111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 82 id~vv~~a 89 (280)
T PRK06914 82 IDLLVNNA 89 (280)
T ss_pred eeEEEECC
Confidence 79988875
No 448
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=65.16 E-value=93 Score=27.01 Aligned_cols=103 Identities=12% Similarity=0.104 Sum_probs=60.4
Q ss_pred CCCeEEEEecccchhHH----HHhhc--CC---eEEEEeC----CHHHHHHHHHHHHH----cCCCcEEEEe---Cchhc
Q 043853 67 GSEIVLDLFCGTGTIGL----TLARW--VK---HVYGYEV----VPQAISDACRNAKL----NNISNATFVQ---GDLNK 126 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~----~la~~--~~---~v~gvD~----~~~~i~~a~~n~~~----~~~~~v~~~~---~d~~~ 126 (222)
+.-.|+|+|.|.|.--. .++.+ ++ ++|||+. +...++.+.+++.. .|++ .+|.. .++.+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~-fef~~v~~~~~e~ 188 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP-FEFHPVVVESLED 188 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc-EEEEecccCchhh
Confidence 35689999999998433 44443 22 8999999 77777777666543 4664 44444 34444
Q ss_pred hhhh-cCCCCCCCcEEEECCC------------CCCccHHHHHHHHhCCCCcEEEEeeC
Q 043853 127 IGGD-FGNAFPKPDIVISDPN------------RPGMHMKLIKFLLKLKAPRIVYVSCN 172 (222)
Q Consensus 127 ~~~~-~~~~~~~fD~ii~~pp------------~~~~~~~~~~~l~~l~~~~~v~~~~~ 172 (222)
+... +... .=..++.|-. .......++..++.++|.-++.+..+
T Consensus 189 l~~~~l~~~--~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E~e 245 (374)
T PF03514_consen 189 LDPSMLRLR--PGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVEQE 245 (374)
T ss_pred CCHHHhCcc--CCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEeec
Confidence 3221 1111 1223333321 01123468888999999887776653
No 449
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.04 E-value=20 Score=30.55 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=28.6
Q ss_pred CCCeEEEEecccchhHHHH-hh--cCCeEEEEeCCHHHHHHHHH
Q 043853 67 GSEIVLDLFCGTGTIGLTL-AR--WVKHVYGYEVVPQAISDACR 107 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~l-a~--~~~~v~gvD~~~~~i~~a~~ 107 (222)
++.++.=.|+|.=+++... ++ +..+++|+|+++.-.+.|++
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 3677777777654444422 22 34599999999999988876
No 450
>PRK06194 hypothetical protein; Provisional
Probab=64.69 E-value=43 Score=27.20 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=46.6
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.| |+|+++..++ +.+.+|+.+|.++...+.....+...+. ++.++.+|+.+... ......+.
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 45677444 5566666554 4466899999988776666555544333 47888888865421 11111135
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 84 id~vi~~A 91 (287)
T PRK06194 84 VHLLFNNA 91 (287)
T ss_pred CCEEEECC
Confidence 79998875
No 451
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.51 E-value=55 Score=27.18 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=44.5
Q ss_pred CCCeEEEEecccchhHH----HHhhcCCeEEEEeCC-HHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCC
Q 043853 67 GSEIVLDLFCGTGTIGL----TLARWVKHVYGYEVV-PQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAF 135 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~-~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~ 135 (222)
+++++|=.|++.| ++. .+++.+.+++.+|.+ +...+.+.+.++..+. ++.++.+|+.+.. ..... .
T Consensus 11 ~~k~~lVTGas~g-IG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dv~d~~~~~~~~~~~~~-~ 87 (306)
T PRK07792 11 SGKVAVVTGAAAG-LGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGA-KAVAVAGDISQRATADELVATAVG-L 87 (306)
T ss_pred CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHH-h
Confidence 3567887776644 444 444557788888874 3344444444444332 4778888876531 11111 2
Q ss_pred CCCcEEEECC
Q 043853 136 PKPDIVISDP 145 (222)
Q Consensus 136 ~~fD~ii~~p 145 (222)
++.|++|.+.
T Consensus 88 g~iD~li~nA 97 (306)
T PRK07792 88 GGLDIVVNNA 97 (306)
T ss_pred CCCCEEEECC
Confidence 4789998875
No 452
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=64.39 E-value=49 Score=26.49 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=43.8
Q ss_pred CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~ 137 (222)
++++|=.|++ |+++. .+++.+.+|+.++.++..++...+.. + .++.++..|+.+.. .......+.
T Consensus 6 ~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 80 (263)
T PRK06200 6 GQVALITGGG-SGIGRALVERFLAEGARVAVLERSAEKLASLRQRF---G-DHVLVVEGDVTSYADNQRAVDQTVDAFGK 80 (263)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 5677777764 44444 34455679999999987665554332 1 24677788875432 111112246
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 81 id~li~~a 88 (263)
T PRK06200 81 LDCFVGNA 88 (263)
T ss_pred CCEEEECC
Confidence 89988775
No 453
>PRK06196 oxidoreductase; Provisional
Probab=64.27 E-value=53 Score=27.32 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=45.0
Q ss_pred CCeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.| |+|+++..+++ .+.+|+.++.++...+.+...+. ++.++.+|+.+... ........
T Consensus 26 ~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~~~v~~~~~~~~~~~~~ 99 (315)
T PRK06196 26 GKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----GVEVVMLDLADLESVRAFAERFLDSGRR 99 (315)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 56777666 45666665543 46699999998876655544332 36778888765431 11112246
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|++|.+.
T Consensus 100 iD~li~nA 107 (315)
T PRK06196 100 IDILINNA 107 (315)
T ss_pred CCEEEECC
Confidence 89998875
No 454
>PRK06138 short chain dehydrogenase; Provisional
Probab=63.83 E-value=71 Score=25.16 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=45.8
Q ss_pred CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|| +|.++..+ ++.+.+++.++.++...+...+.+. .+ .++.++.+|+.+... ........
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 81 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG-GRAFARQGDVGSAEAVEALVDFVAARWGR 81 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC-CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 456777776 45555544 4456789999988776666555554 22 247888888765421 11111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|+++.+.
T Consensus 82 id~vi~~a 89 (252)
T PRK06138 82 LDVLVNNA 89 (252)
T ss_pred CCEEEECC
Confidence 89988865
No 455
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=63.50 E-value=63 Score=29.05 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=40.5
Q ss_pred CCCeEEEEecccchhHHH--HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 67 GSEIVLDLFCGTGTIGLT--LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~--la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
.+++|+=+|.|.-+.+.. +...+.++++.|.++..++. ++..| +.+..++... ..+ ..+|+|+.+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~----l~~~g---~~~~~~~~~~--~~l----~~~D~VV~S 77 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRP----HAERG---VATVSTSDAV--QQI----ADYALVVTS 77 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH----HHhCC---CEEEcCcchH--hHh----hcCCEEEEC
Confidence 367899999885555543 44567799999987665433 23233 3444433211 111 258999999
Q ss_pred CC
Q 043853 145 PN 146 (222)
Q Consensus 145 pp 146 (222)
|.
T Consensus 78 pG 79 (488)
T PRK03369 78 PG 79 (488)
T ss_pred CC
Confidence 84
No 456
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=63.28 E-value=83 Score=25.81 Aligned_cols=95 Identities=17% Similarity=0.137 Sum_probs=52.1
Q ss_pred eEEEEeccc--chhHHHHhhcCCeEEEEeCCHHHHHHHHHHHH-------HcC-CC---------cEEEEeCchhchhhh
Q 043853 70 IVLDLFCGT--GTIGLTLARWVKHVYGYEVVPQAISDACRNAK-------LNN-IS---------NATFVQGDLNKIGGD 130 (222)
Q Consensus 70 ~vlDlg~G~--G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~-------~~~-~~---------~v~~~~~d~~~~~~~ 130 (222)
+|-=+|+|. +.++..++..+.+|+.+|.+++.++.+++.++ ..+ ++ ++++ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~---- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD---- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH----
Confidence 455567662 23334555566799999999999977664332 222 11 1221 222211
Q ss_pred cCCCCCCCcEEEECCC-CCCccHHHHHHHHh-CCCCcEEEEeeCc
Q 043853 131 FGNAFPKPDIVISDPN-RPGMHMKLIKFLLK-LKAPRIVYVSCNP 173 (222)
Q Consensus 131 ~~~~~~~fD~ii~~pp-~~~~~~~~~~~l~~-l~~~~~v~~~~~~ 173 (222)
....|+|+..-| .......+...+.. ++++.++..++..
T Consensus 80 ----~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~ 120 (282)
T PRK05808 80 ----LKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS 120 (282)
T ss_pred ----hccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 135788877754 33344567777765 4555555433444
No 457
>PRK07326 short chain dehydrogenase; Provisional
Probab=62.78 E-value=49 Score=25.84 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=46.7
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++.+|=.| |+|.++..++ +.+.+|++++.++...+...+.+... .+++++.+|+.+... ........
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46788777 4666666554 34668999999987766665555432 357888888754321 11111136
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|++|.+.
T Consensus 83 ~d~vi~~a 90 (237)
T PRK07326 83 LDVLIANA 90 (237)
T ss_pred CCEEEECC
Confidence 89888764
No 458
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=62.76 E-value=4.7 Score=33.46 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEecccchhHHHHhhcCCeEEEEeCCHHHH
Q 043853 53 LYKLIEDCAGLRDDGSEIVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAI 102 (222)
Q Consensus 53 ~~~~i~~~~~~~~~~~~~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i 102 (222)
++.++..++ | ++...+|++||.|.+.+.++.. .+++.-|+++.++
T Consensus 15 l~~~i~~~l---P-~~~~y~EPF~GggaV~i~~~~~-~~~i~~Din~~Lv 59 (274)
T COG0338 15 LLDQIIPHL---P-EGVSYIEPFVGGGAVFINLAAK-KKYILNDINPDLV 59 (274)
T ss_pred HHHHHHHhC---C-CCceeeCCccCcceeeeehhhh-hhhhHhcCCHHHH
Confidence 445555554 2 3349999999999999977654 5677778888876
No 459
>PRK07454 short chain dehydrogenase; Provisional
Probab=62.66 E-value=60 Score=25.50 Aligned_cols=76 Identities=16% Similarity=0.096 Sum_probs=47.6
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
.+++|=.| |+|.++..++ +.+.+|+.++.++...+...+.++..+ .++.++.+|+.+... ........
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45677777 4666666554 346699999999877666655554433 247888898865431 11111135
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 84 id~lv~~a 91 (241)
T PRK07454 84 PDVLINNA 91 (241)
T ss_pred CCEEEECC
Confidence 89998875
No 460
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.62 E-value=44 Score=26.90 Aligned_cols=78 Identities=6% Similarity=-0.129 Sum_probs=42.6
Q ss_pred CCeEEEEeccc-chhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCC
Q 043853 68 SEIVLDLFCGT-GTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFP 136 (222)
Q Consensus 68 ~~~vlDlg~G~-G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~ 136 (222)
++.+|=.|+++ ++++.+++ +.+.+|+.++.+....+.+++......-.++.++..|+.+... ......+
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 86 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEVG 86 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 67889888763 66666554 4566888776542222222222222211247778888755421 1111224
Q ss_pred CCcEEEECC
Q 043853 137 KPDIVISDP 145 (222)
Q Consensus 137 ~fD~ii~~p 145 (222)
++|+++.+.
T Consensus 87 ~ld~lv~na 95 (257)
T PRK08594 87 VIHGVAHCI 95 (257)
T ss_pred CccEEEECc
Confidence 789988764
No 461
>PRK08265 short chain dehydrogenase; Provisional
Probab=62.53 E-value=53 Score=26.37 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=43.2
Q ss_pred CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|+ +|+++..+ ++.+.+|+.++.++...+...+.+ + .++.++.+|+.+... ........
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 80 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G-ERARFIATDITDDAAIERAVATVVARFGR 80 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-CeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 467776664 45555544 445679999999876554443322 2 247788888865421 11111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 81 id~lv~~a 88 (261)
T PRK08265 81 VDILVNLA 88 (261)
T ss_pred CCEEEECC
Confidence 89998875
No 462
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=62.48 E-value=70 Score=26.77 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=53.1
Q ss_pred eEEEEeccc-chhH-HHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcC---CCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 70 IVLDLFCGT-GTIG-LTLARWV--KHVYGYEVVPQAISDACRNAKLNN---ISNATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 70 ~vlDlg~G~-G~~~-~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
+|.=+|||. |... ..++..+ .+++.+|.++...+....-+...- ..++.+..++..++ ...|+|+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l--------~~aDIVI 73 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDC--------KDADIVV 73 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHh--------CCCCEEE
Confidence 466678763 2222 2334433 489999998776554444332211 11244444444332 2589887
Q ss_pred ECC--CC-CC------------ccHHHHHHHHhCCCCcEEEEeeCccc
Q 043853 143 SDP--NR-PG------------MHMKLIKFLLKLKAPRIVYVSCNPAT 175 (222)
Q Consensus 143 ~~p--p~-~~------------~~~~~~~~l~~l~~~~~v~~~~~~~~ 175 (222)
... |+ .+ +...+.+.+....|.+++++.+||..
T Consensus 74 itag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d 121 (306)
T cd05291 74 ITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD 121 (306)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH
Confidence 754 22 11 12344444555678888888888743
No 463
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=62.27 E-value=38 Score=30.24 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=46.7
Q ss_pred CCeEEEEecccchhHH--HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEECC
Q 043853 68 SEIVLDLFCGTGTIGL--TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISDP 145 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~--~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~p 145 (222)
+++|+=+|=|..+.+. .+.+.+..++..|.++.......... ..+++++..+...... ...+|+|+.+|
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~---~~~~i~~~~g~~~~~~------~~~~d~vV~SP 77 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPL---LLEGIEVELGSHDDED------LAEFDLVVKSP 77 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhh---hccCceeecCccchhc------cccCCEEEECC
Confidence 6789999998666555 55667889999999877722222211 1235777777654421 13799999999
Q ss_pred C
Q 043853 146 N 146 (222)
Q Consensus 146 p 146 (222)
-
T Consensus 78 G 78 (448)
T COG0771 78 G 78 (448)
T ss_pred C
Confidence 4
No 464
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=62.27 E-value=10 Score=32.33 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=14.6
Q ss_pred CCCeEEEEecccchhHHHHh
Q 043853 67 GSEIVLDLFCGTGTIGLTLA 86 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la 86 (222)
+.-+|+|+||.+|..++.+.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~ 35 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAV 35 (334)
T ss_dssp TEEEEEEES--SSHHHHHHH
T ss_pred CceEEEecCCCCCccHHHHH
Confidence 45689999999999988544
No 465
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=62.00 E-value=16 Score=33.85 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=28.5
Q ss_pred CCCeEEEEecccchhHHHHhhcC---CeEEEEeCCHH
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWV---KHVYGYEVVPQ 100 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~---~~v~gvD~~~~ 100 (222)
+...|||+||-.|++...+++.. .-|+|+|+-|.
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 47899999999999998877754 48999999764
No 466
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=61.93 E-value=73 Score=26.24 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEecccchh----HH----HHhhc-C----CeEEEEeCCHHHHHHHHHHHHHcCCCc
Q 043853 50 AEVLYKLIEDCAGLRDDGSEIVLDLFCGTGTI----GL----TLARW-V----KHVYGYEVVPQAISDACRNAKLNNISN 116 (222)
Q Consensus 50 ~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~~----~~----~la~~-~----~~v~gvD~~~~~i~~a~~n~~~~~~~~ 116 (222)
.+.+++.+..+... +...+.+.+|.|+- ++ .+.+. + .++++.|.|+..++..-..+...|+.+
T Consensus 14 ~~~l~~~~~~l~~~----~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~n 89 (272)
T TIGR00676 14 EENLWETVDRLSPL----DPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRH 89 (272)
T ss_pred HHHHHHHHHHHhcC----CCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCE
Confidence 46666666655422 34688999988841 22 22222 2 388999999998888888888899999
Q ss_pred EEEEeCchhc
Q 043853 117 ATFVQGDLNK 126 (222)
Q Consensus 117 v~~~~~d~~~ 126 (222)
+-++.||...
T Consensus 90 vL~l~GD~~~ 99 (272)
T TIGR00676 90 ILALRGDPPK 99 (272)
T ss_pred EEEeCCCCCC
Confidence 9999999863
No 467
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=61.85 E-value=57 Score=28.35 Aligned_cols=104 Identities=20% Similarity=0.138 Sum_probs=55.3
Q ss_pred CCCeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHH--HHHHHHHcCCCcEEEEeCchhchhh--hcCCCC-CC
Q 043853 67 GSEIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISD--ACRNAKLNNISNATFVQGDLNKIGG--DFGNAF-PK 137 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~--a~~n~~~~~~~~v~~~~~d~~~~~~--~~~~~~-~~ 137 (222)
.+++||=.| |+|.++..+++ .+.+|++++.++..... ....... ...+++++.+|+.+... ...... ..
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~~~~ 136 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKK-ELPGAEVVFGDVTDADSLRKVLFSEGDP 136 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhh-hcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 356777666 78887776653 45689999887643321 0111111 12357889999866421 111110 15
Q ss_pred CcEEEECC-CCC----Cc-------cHHHHHHHHhCCCCcEEEEeeC
Q 043853 138 PDIVISDP-NRP----GM-------HMKLIKFLLKLKAPRIVYVSCN 172 (222)
Q Consensus 138 fD~ii~~p-p~~----~~-------~~~~~~~l~~l~~~~~v~~~~~ 172 (222)
+|+|+.+. +.. .. ...+++.+...+-+.++++++.
T Consensus 137 ~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~ 183 (390)
T PLN02657 137 VDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAI 183 (390)
T ss_pred CcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 89998643 111 11 1233344444445678887763
No 468
>PRK07832 short chain dehydrogenase; Provisional
Probab=61.45 E-value=60 Score=26.17 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=42.0
Q ss_pred EEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCCCcE
Q 043853 71 VLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPKPDI 140 (222)
Q Consensus 71 vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~fD~ 140 (222)
++=.| |+|+++..+ ++.+.+++.++.++...+.+.+.+...+...+.+..+|+.+.. ..........|+
T Consensus 3 vlItG-as~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 81 (272)
T PRK07832 3 CFVTG-AASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDV 81 (272)
T ss_pred EEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 34444 455655544 4456689999988877766655555433322455667764422 111111236899
Q ss_pred EEECC
Q 043853 141 VISDP 145 (222)
Q Consensus 141 ii~~p 145 (222)
++.+.
T Consensus 82 lv~~a 86 (272)
T PRK07832 82 VMNIA 86 (272)
T ss_pred EEECC
Confidence 98875
No 469
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=60.93 E-value=74 Score=30.21 Aligned_cols=92 Identities=18% Similarity=0.112 Sum_probs=56.0
Q ss_pred CCeEEEEecccch--hHHHHh-hcCCeEEEEeCCHHHHHHHHHHHHHc-------C-C---------CcEEEEeCchhch
Q 043853 68 SEIVLDLFCGTGT--IGLTLA-RWVKHVYGYEVVPQAISDACRNAKLN-------N-I---------SNATFVQGDLNKI 127 (222)
Q Consensus 68 ~~~vlDlg~G~G~--~~~~la-~~~~~v~gvD~~~~~i~~a~~n~~~~-------~-~---------~~v~~~~~d~~~~ 127 (222)
-++|.=+|+|+=+ ++..++ ..+.+|+-.|.+++.++.+++.+... + + .++++. .|...
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~- 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG- 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH-
Confidence 3678899998733 444555 55789999999999998887766432 1 1 112222 12111
Q ss_pred hhhcCCCCCCCcEEEECCC-CCCccHHHHHHHHhCCCCcEEE
Q 043853 128 GGDFGNAFPKPDIVISDPN-RPGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 128 ~~~~~~~~~~fD~ii~~pp-~~~~~~~~~~~l~~l~~~~~v~ 168 (222)
....|+|+=.-| ...+...+...+....+...++
T Consensus 387 -------~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~il 421 (708)
T PRK11154 387 -------FKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIF 421 (708)
T ss_pred -------hccCCEEeecccccHHHHHHHHHHHHhhCCCCcEE
Confidence 135788876655 3455667777776654444444
No 470
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.89 E-value=61 Score=25.46 Aligned_cols=76 Identities=7% Similarity=0.074 Sum_probs=46.6
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~ 137 (222)
+.++|=.|+ +|+++..++ +.+.+++.++.++..++.+.+.+...+. ++.++..|+.+.. .........
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT-EVRGYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 567887775 455555444 3456899999998777666665554432 4777888865431 111111136
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|+||.+.
T Consensus 83 id~vi~~a 90 (253)
T PRK08217 83 LNGLINNA 90 (253)
T ss_pred CCEEEECC
Confidence 89998875
No 471
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=60.85 E-value=67 Score=26.76 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=45.5
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|+ +|+++..++ +.+.+|+.++.++...+.+.+.+...+ .++.++..|+.+... ........
T Consensus 6 ~k~vlVTGa-s~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 83 (322)
T PRK07453 6 KGTVIITGA-SSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPP-DSYTIIHIDLGDLDSVRRFVDDFRALGKP 83 (322)
T ss_pred CCEEEEEcC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccC-CceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 556776664 556655444 456789999988776665555443221 247888888755421 11111235
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|++|.+.
T Consensus 84 iD~li~nA 91 (322)
T PRK07453 84 LDALVCNA 91 (322)
T ss_pred ccEEEECC
Confidence 89998875
No 472
>PRK07831 short chain dehydrogenase; Provisional
Probab=60.85 E-value=55 Score=26.15 Aligned_cols=78 Identities=10% Similarity=0.091 Sum_probs=47.3
Q ss_pred CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHH-cCCCcEEEEeCchhchhh------hcCCCCC
Q 043853 68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKL-NNISNATFVQGDLNKIGG------DFGNAFP 136 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~-~~~~~v~~~~~d~~~~~~------~~~~~~~ 136 (222)
++++|=.|+..++++. .+++.+.+|+.+|.++..++.+.+.++. .+..++.++.+|+.+... ......+
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 96 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERLG 96 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5677777752112333 4445567899999988877777666654 333357888888765321 1111123
Q ss_pred CCcEEEECC
Q 043853 137 KPDIVISDP 145 (222)
Q Consensus 137 ~fD~ii~~p 145 (222)
..|+++.+.
T Consensus 97 ~id~li~~a 105 (262)
T PRK07831 97 RLDVLVNNA 105 (262)
T ss_pred CCCEEEECC
Confidence 689988876
No 473
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=60.84 E-value=5.6 Score=33.23 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=22.4
Q ss_pred EEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853 117 ATFVQGDLNKIGGDFGNAFPKPDIVISDPNR 147 (222)
Q Consensus 117 v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~ 147 (222)
-.|+.||+.+...-+......+|+||+|||+
T Consensus 164 SsF~~gDv~~~~qll~~H~llpdlIIiDPPW 194 (366)
T KOG2356|consen 164 SSFHVGDVKDIEQLLRAHDLLPDLIIIDPPW 194 (366)
T ss_pred cceecccHHHHHHHhHHHhhcCCeEEeCCCC
Confidence 5788999877654433333467999999994
No 474
>PRK05872 short chain dehydrogenase; Provisional
Probab=60.71 E-value=54 Score=26.99 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=43.8
Q ss_pred CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|+ +|+++..+ ++.+.+|+.++.++..++...+.+.. + ..+..+..|+.+... ......+.
T Consensus 9 gk~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 9 GKVVVVTGA-ARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-D-DRVLTVVADVTDLAAMQAAAEEAVERFGG 85 (296)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 567776664 45555544 44567999999998876665544421 1 135555677655321 11111246
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|++|.+.
T Consensus 86 id~vI~nA 93 (296)
T PRK05872 86 IDVVVANA 93 (296)
T ss_pred CCEEEECC
Confidence 89999876
No 475
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=60.62 E-value=1e+02 Score=26.06 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=59.4
Q ss_pred HHHHHHhcCCCCCCCeEEEEecc--cchhHHHHhhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhh
Q 043853 55 KLIEDCAGLRDDGSEIVLDLFCG--TGTIGLTLARWVK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGD 130 (222)
Q Consensus 55 ~~i~~~~~~~~~~~~~vlDlg~G--~G~~~~~la~~~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~ 130 (222)
..+.....+.+ +++||=.|+. .|.+++.+|+... .++++-.+++-.+.++ ..|.+. +.+...|+.+-...
T Consensus 132 ~~l~~~~~l~~--g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~----~lGAd~vi~y~~~~~~~~v~~ 205 (326)
T COG0604 132 LALFDRAGLKP--GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK----ELGADHVINYREEDFVEQVRE 205 (326)
T ss_pred HHHHHhcCCCC--CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHH----hcCCCEEEcCCcccHHHHHHH
Confidence 33334333443 7888888843 5567777777543 7777777776555443 345543 45556665554433
Q ss_pred cCCCCCCCcEEEECCCCCCccHHHHHHHHhCCCCcEEEE
Q 043853 131 FGNAFPKPDIVISDPNRPGMHMKLIKFLLKLKAPRIVYV 169 (222)
Q Consensus 131 ~~~~~~~fD~ii~~pp~~~~~~~~~~~l~~l~~~~~v~~ 169 (222)
+.. ...+|+|+-..- ...+.+.+..++++|.+..
T Consensus 206 ~t~-g~gvDvv~D~vG----~~~~~~~l~~l~~~G~lv~ 239 (326)
T COG0604 206 LTG-GKGVDVVLDTVG----GDTFAASLAALAPGGRLVS 239 (326)
T ss_pred HcC-CCCceEEEECCC----HHHHHHHHHHhccCCEEEE
Confidence 321 236999887432 2344445666676666553
No 476
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=60.53 E-value=66 Score=25.58 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=42.3
Q ss_pred CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~ 137 (222)
++++|=.|++ |+++.. +++.+.+|+.++.++. .+...+.+...+. ++.++..|+.+.. .......+.
T Consensus 8 ~k~vlVtGas-~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (260)
T PRK12823 8 GKVVVVTGAA-QGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAGG-EALALTADLETYAGAQAAMAAAVEAFGR 84 (260)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcCC-eEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 5677777754 454444 4445678999998864 3333333333332 4677778876532 111111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|+++.+.
T Consensus 85 id~lv~nA 92 (260)
T PRK12823 85 IDVLINNV 92 (260)
T ss_pred CeEEEECC
Confidence 89998875
No 477
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=60.45 E-value=57 Score=28.99 Aligned_cols=104 Identities=18% Similarity=0.139 Sum_probs=59.9
Q ss_pred CCeEEEEec-ccchhH------HHHhhcCC--eEEEEeCC-HHHHHHHHHHHHHcCCCcEEEE-eCchhchhhh-cC-CC
Q 043853 68 SEIVLDLFC-GTGTIG------LTLARWVK--HVYGYEVV-PQAISDACRNAKLNNISNATFV-QGDLNKIGGD-FG-NA 134 (222)
Q Consensus 68 ~~~vlDlg~-G~G~~~------~~la~~~~--~v~gvD~~-~~~i~~a~~n~~~~~~~~v~~~-~~d~~~~~~~-~~-~~ 134 (222)
...|+=+|= |+|-.+ ..+.+.+. -+++.|.- |.++++.+......+++-.... ..|..+.... +. ..
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak 179 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAK 179 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHH
Confidence 445666652 455433 34444344 46677764 8999999999988777521111 1122222110 00 01
Q ss_pred CCCCcEEEECCC-CCCccHHHHHHHHh----CCCCcEEEEee
Q 043853 135 FPKPDIVISDPN-RPGMHMKLIKFLLK----LKAPRIVYVSC 171 (222)
Q Consensus 135 ~~~fD~ii~~pp-~~~~~~~~~~~l~~----l~~~~~v~~~~ 171 (222)
...+|+||.|-. |-.....+.+.+.. ++|..++++-.
T Consensus 180 ~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvD 221 (451)
T COG0541 180 EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVD 221 (451)
T ss_pred HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEe
Confidence 246999999986 55556666666654 67888877554
No 478
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=60.40 E-value=52 Score=24.05 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=45.0
Q ss_pred EEEEecccchhHHHHh----hc-CCeEEEEeCC--HHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853 71 VLDLFCGTGTIGLTLA----RW-VKHVYGYEVV--PQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK 137 (222)
Q Consensus 71 vlDlg~G~G~~~~~la----~~-~~~v~gvD~~--~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~ 137 (222)
+|=.|+ +|+++..++ +. +..++.+..+ ....+.....++..+ .++.+...|+.+.. .........
T Consensus 3 ~lItGa-~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 3 VLITGA-SSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEETT-TSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EEEECC-CCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 444444 455555444 44 4488888888 666666666666555 46999998875442 111112247
Q ss_pred CcEEEECCC
Q 043853 138 PDIVISDPN 146 (222)
Q Consensus 138 fD~ii~~pp 146 (222)
+|++|.+..
T Consensus 81 ld~li~~ag 89 (167)
T PF00106_consen 81 LDILINNAG 89 (167)
T ss_dssp ESEEEEECS
T ss_pred ccccccccc
Confidence 999998763
No 479
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=60.27 E-value=17 Score=27.91 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=35.0
Q ss_pred CCeEEEEecccchhHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCC---cEEEEeCchhc
Q 043853 68 SEIVLDLFCGTGTIGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNIS---NATFVQGDLNK 126 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~---~v~~~~~d~~~ 126 (222)
...|+.+|||-=+....+.... ..++-+|. |++++.-++.++..+.. +.+++..|+.+
T Consensus 79 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 141 (183)
T PF04072_consen 79 ARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRD 141 (183)
T ss_dssp ESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTS
T ss_pred CcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccc
Confidence 4589999999999988887744 36666665 66777777776665321 23456666543
No 480
>PRK07814 short chain dehydrogenase; Provisional
Probab=60.14 E-value=65 Score=25.83 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=47.9
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh------cCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD------FGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 137 (222)
++++|=.| |+|+++..++ +.+.+|+.++.++...+...+.+...+ .++.++..|+.+...- .....+.
T Consensus 10 ~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (263)
T PRK07814 10 DQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHPEATAGLAGQAVEAFGR 87 (263)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56777777 4666666544 446699999999887766666554433 2478888887654321 1011136
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|+++.+.
T Consensus 88 id~vi~~A 95 (263)
T PRK07814 88 LDIVVNNV 95 (263)
T ss_pred CCEEEECC
Confidence 89998764
No 481
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=59.54 E-value=1e+02 Score=25.72 Aligned_cols=93 Identities=20% Similarity=0.142 Sum_probs=46.7
Q ss_pred CCCeEEEEecc-cchhHHHHhhc-CCe-EEEEeCCHHHHHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 67 GSEIVLDLFCG-TGTIGLTLARW-VKH-VYGYEVVPQAISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 67 ~~~~vlDlg~G-~G~~~~~la~~-~~~-v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
++++||=.|+| .|..++.+++. +.+ +++++.++...+.+++ .|.+. +.....+..... ... ....+|+++
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~-~~~-~~~~~d~vi 236 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIR-ELT-SGAGADVAI 236 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHH-HHh-CCCCCCEEE
Confidence 36777777764 22233344443 445 9999999887777654 34432 122111211111 111 123699988
Q ss_pred ECCCCCCccHHHHHHHHhCCCCcEEE
Q 043853 143 SDPNRPGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 143 ~~pp~~~~~~~~~~~l~~l~~~~~v~ 168 (222)
-..... ..+...+..++++|.++
T Consensus 237 d~~g~~---~~~~~~~~~l~~~G~~v 259 (339)
T cd08239 237 ECSGNT---AARRLALEAVRPWGRLV 259 (339)
T ss_pred ECCCCH---HHHHHHHHHhhcCCEEE
Confidence 654321 12233445556666554
No 482
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=59.23 E-value=1.2e+02 Score=26.47 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=59.3
Q ss_pred eEEEEecccchhHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCc--EEEEeCchhchhhhcCCCCCCCcEEEECCCC
Q 043853 70 IVLDLFCGTGTIGLTLARWVKHVYGYEVVPQAISDACRNAKLNNISN--ATFVQGDLNKIGGDFGNAFPKPDIVISDPNR 147 (222)
Q Consensus 70 ~vlDlg~G~G~~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~--v~~~~~d~~~~~~~~~~~~~~fD~ii~~pp~ 147 (222)
.|+=++-.-|.+++.++...+..+ .| |-..-...+.|++.|+++. +++. +..+-+. ..+|+|+.-.|+
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~-~d-s~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~~------~~~d~vl~~~PK 116 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI-GD-SYISELATRENLRLNGIDESSVKFL--DSTADYP------QQPGVVLIKVPK 116 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee-eh-HHHHHHHHHHHHHHcCCCcccceee--ccccccc------CCCCEEEEEeCC
Confidence 799999999999999986444322 23 3344456688999998863 4444 2222221 369999998886
Q ss_pred C-CccHHHHHHHH-hCCCCcEEEEeeCc
Q 043853 148 P-GMHMKLIKFLL-KLKAPRIVYVSCNP 173 (222)
Q Consensus 148 ~-~~~~~~~~~l~-~l~~~~~v~~~~~~ 173 (222)
. .+....+..+. .+.+++.+++....
T Consensus 117 ~~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 117 TLALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 5 23333344443 36777777755543
No 483
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=59.13 E-value=66 Score=26.99 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=56.8
Q ss_pred EcCCccccCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEecccch------h--HHHHhhc-----CCeEEEEeCCHHHHH
Q 043853 37 ISANSFFQTNTHQAEVLYKLIEDCAGLRDDGSEIVLDLFCGTGT------I--GLTLARW-----VKHVYGYEVVPQAIS 103 (222)
Q Consensus 37 ~~~~~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~vlDlg~G~G~------~--~~~la~~-----~~~v~gvD~~~~~i~ 103 (222)
++..-|-|.+....+.+++.+..+..+.+ .++.+-.|.|. . +..+.+. .+++++.|.++..++
T Consensus 25 vS~E~~PPk~~~~~~~l~~~~~~l~~~~p----~fvsVT~~~~~~~~~r~~~~a~~i~~~~g~~~i~Hltcr~~n~~~l~ 100 (296)
T PRK09432 25 VSFEFFPPRTSEMEQTLWNSIDRLSSLKP----KFVSVTYGANSGERDRTHSIIKGIKKRTGLEAAPHLTCIDATPDELR 100 (296)
T ss_pred EEEEEeCcCCchHHHHHHHHHHHHHhcCC----CEEEEecCCCCcHHHHHHHHHHHHHHHhCCCeeeecccCCCCHHHHH
Confidence 33344444444566666666666654443 48788777773 1 1122221 238999999999999
Q ss_pred HHHHHHHHcCCCcEEEEeCchh
Q 043853 104 DACRNAKLNNISNATFVQGDLN 125 (222)
Q Consensus 104 ~a~~n~~~~~~~~v~~~~~d~~ 125 (222)
..-..+...|+.|+=++.||..
T Consensus 101 ~~L~~~~~~GI~niLaLrGD~p 122 (296)
T PRK09432 101 TIAKDYWNNGIRHIVALRGDLP 122 (296)
T ss_pred HHHHHHHHCCCCEEEEeCCCCC
Confidence 8888889999999999999953
No 484
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=58.90 E-value=94 Score=25.59 Aligned_cols=78 Identities=17% Similarity=0.102 Sum_probs=55.8
Q ss_pred CCeEEEEecccch---hHHHHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCC--cEEEEeCchhchhh------hcCCC-C
Q 043853 68 SEIVLDLFCGTGT---IGLTLARWVKHVYGYEVVPQAISDACRNAKLNNIS--NATFVQGDLNKIGG------DFGNA-F 135 (222)
Q Consensus 68 ~~~vlDlg~G~G~---~~~~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~--~v~~~~~d~~~~~~------~~~~~-~ 135 (222)
++.+|=-|..+|. ....+++.+.+|+-.+.+++.++....-....+.. ++..+..|+.+... ..... .
T Consensus 8 gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~~ 87 (270)
T KOG0725|consen 8 GKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKFF 87 (270)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHhC
Confidence 6778888877775 34577788899999999999998888777666553 48888888854321 11112 3
Q ss_pred CCCcEEEECC
Q 043853 136 PKPDIVISDP 145 (222)
Q Consensus 136 ~~fD~ii~~p 145 (222)
.+.|+++.|.
T Consensus 88 GkidiLvnna 97 (270)
T KOG0725|consen 88 GKIDILVNNA 97 (270)
T ss_pred CCCCEEEEcC
Confidence 5799998876
No 485
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=58.88 E-value=98 Score=25.18 Aligned_cols=92 Identities=14% Similarity=0.033 Sum_probs=47.5
Q ss_pred CCCeEEEEecc-cchhHHHHhhc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEe-CchhchhhhcCCCCCCCcEEE
Q 043853 67 GSEIVLDLFCG-TGTIGLTLARW-VK-HVYGYEVVPQAISDACRNAKLNNISNATFVQ-GDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 67 ~~~~vlDlg~G-~G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~fD~ii 142 (222)
++++||=.|+| .|..++.+|+. +. +++++|.++.-.+.+++ .|.+. ++. .+..+...... ....+|+++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~~-~~~g~d~vi 192 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATA--LAEPEVLAERQGGLQ-NGRGVDVAL 192 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcE--ecCchhhHHHHHHHh-CCCCCCEEE
Confidence 47788888764 33333444543 33 59999999887777665 34432 111 11111111111 123589887
Q ss_pred ECCCCCCccHHHHHHHHhCCCCcEEE
Q 043853 143 SDPNRPGMHMKLIKFLLKLKAPRIVY 168 (222)
Q Consensus 143 ~~pp~~~~~~~~~~~l~~l~~~~~v~ 168 (222)
-... -...+...+..+++++.+.
T Consensus 193 d~~G---~~~~~~~~~~~l~~~G~iv 215 (280)
T TIGR03366 193 EFSG---ATAAVRACLESLDVGGTAV 215 (280)
T ss_pred ECCC---ChHHHHHHHHHhcCCCEEE
Confidence 6432 1233444555567666654
No 486
>PRK09072 short chain dehydrogenase; Provisional
Probab=58.80 E-value=64 Score=25.81 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=45.4
Q ss_pred CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|++ |+++.. +++.+.+|+.++.++..++.....+. .+ .++.++..|+.+... .... ...
T Consensus 5 ~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~d~~~~~~~~~~~~~-~~~ 80 (263)
T PRK09072 5 DKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP-YP-GRHRWVVADLTSEAGREAVLARARE-MGG 80 (263)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh-cC-CceEEEEccCCCHHHHHHHHHHHHh-cCC
Confidence 4566666654 444443 44456799999999887766655442 22 257888888765431 1111 236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 81 id~lv~~a 88 (263)
T PRK09072 81 INVLINNA 88 (263)
T ss_pred CCEEEECC
Confidence 89998874
No 487
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=58.73 E-value=68 Score=25.91 Aligned_cols=76 Identities=20% Similarity=0.141 Sum_probs=45.9
Q ss_pred CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|++ |+++. .+++.+.+|+.++.++...+...+.+...+. ++.++.+|+.+... ......+.
T Consensus 10 ~k~vlVtGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 87 (278)
T PRK08277 10 GKVAVITGGG-GVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGG-EALAVKADVLDKESLEQARQQILEDFGP 87 (278)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 4667766654 44444 3344567999999988777666555544332 47788888755421 11111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|++|.+.
T Consensus 88 id~li~~a 95 (278)
T PRK08277 88 CDILINGA 95 (278)
T ss_pred CCEEEECC
Confidence 89998874
No 488
>PRK12743 oxidoreductase; Provisional
Probab=58.67 E-value=83 Score=25.04 Aligned_cols=75 Identities=11% Similarity=0.094 Sum_probs=44.2
Q ss_pred CeEEEEecccchhHHHHhh----cCCeEEEEe-CCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 69 EIVLDLFCGTGTIGLTLAR----WVKHVYGYE-VVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 69 ~~vlDlg~G~G~~~~~la~----~~~~v~gvD-~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
+++|=.|+ +|+++..+++ .+.+|+.+. .++...+.+.+.++..+. ++.++..|+.+... .......+
T Consensus 3 k~vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12743 3 QVAIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGV-RAEIRQLDLSDLPEGAQALDKLIQRLGR 80 (256)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46777775 5556665553 456777764 455555555555555443 47888888765421 11112236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 81 id~li~~a 88 (256)
T PRK12743 81 IDVLVNNA 88 (256)
T ss_pred CCEEEECC
Confidence 89998876
No 489
>PLN02827 Alcohol dehydrogenase-like
Probab=58.54 E-value=1.2e+02 Score=26.07 Aligned_cols=93 Identities=11% Similarity=0.031 Sum_probs=48.6
Q ss_pred CCCeEEEEecc-cchhHHHHhhc-CC-eEEEEeCCHHHHHHHHHHHHHcCCCc-EEEEe--CchhchhhhcCCCCCCCcE
Q 043853 67 GSEIVLDLFCG-TGTIGLTLARW-VK-HVYGYEVVPQAISDACRNAKLNNISN-ATFVQ--GDLNKIGGDFGNAFPKPDI 140 (222)
Q Consensus 67 ~~~~vlDlg~G-~G~~~~~la~~-~~-~v~gvD~~~~~i~~a~~n~~~~~~~~-v~~~~--~d~~~~~~~~~~~~~~fD~ 140 (222)
++++||=.|+| .|.+++.+++. +. .++++|.++...+.|++ .|.+. +.... .++.+....+.. ..+|+
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~~--~g~d~ 266 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMTG--GGADY 266 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHhC--CCCCE
Confidence 47888888764 23333344442 33 68999999887777644 45532 11111 122222221111 25898
Q ss_pred EEECCCCCCccHHHHHHHHhCCCC-cEEE
Q 043853 141 VISDPNRPGMHMKLIKFLLKLKAP-RIVY 168 (222)
Q Consensus 141 ii~~pp~~~~~~~~~~~l~~l~~~-~~v~ 168 (222)
++-.. +....+...+..++++ |.++
T Consensus 267 vid~~---G~~~~~~~~l~~l~~g~G~iv 292 (378)
T PLN02827 267 SFECV---GDTGIATTALQSCSDGWGLTV 292 (378)
T ss_pred EEECC---CChHHHHHHHHhhccCCCEEE
Confidence 87643 2223445556666666 6654
No 490
>PRK05855 short chain dehydrogenase; Validated
Probab=58.26 E-value=67 Score=28.96 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=48.9
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh------cCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD------FGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 137 (222)
+.++|=+| |+|+++..++ +.+.+|+.++.++...+.+.+.++..+. ++.++.+|+.+...- .....+.
T Consensus 315 ~~~~lv~G-~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 315 GKLVVVTG-AGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CCEEEEEC-CcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 45566555 4666666544 4566899999998877776666655554 488888888665311 1111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 393 id~lv~~A 400 (582)
T PRK05855 393 PDIVVNNA 400 (582)
T ss_pred CcEEEECC
Confidence 89998875
No 491
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=58.09 E-value=93 Score=25.91 Aligned_cols=86 Identities=15% Similarity=0.047 Sum_probs=47.1
Q ss_pred CeEEEEecccch--hHHHHhhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEEEC
Q 043853 69 EIVLDLFCGTGT--IGLTLARWV--KHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVISD 144 (222)
Q Consensus 69 ~~vlDlg~G~G~--~~~~la~~~--~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii~~ 144 (222)
.+|.=+|+|.=+ ++..+.+.+ ..|+++|.++...+.+++ .+.. .. ...+..+.. ...|+|+..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~-~~-~~~~~~~~~-------~~aDvViia 73 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLG-DR-VTTSAAEAV-------KGADLVILC 73 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCC-ce-ecCCHHHHh-------cCCCEEEEC
Confidence 568888887533 223444444 389999999987776643 3331 11 112222211 257999887
Q ss_pred CCCCCccHHHHHHHHh-CCCCcEEE
Q 043853 145 PNRPGMHMKLIKFLLK-LKAPRIVY 168 (222)
Q Consensus 145 pp~~~~~~~~~~~l~~-l~~~~~v~ 168 (222)
-|... ...+.+.+.. ++++.++.
T Consensus 74 vp~~~-~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 74 VPVGA-SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CCHHH-HHHHHHHHHhhCCCCCEEE
Confidence 76432 2444554543 56666554
No 492
>PLN02214 cinnamoyl-CoA reductase
Probab=58.01 E-value=1.2e+02 Score=25.72 Aligned_cols=75 Identities=16% Similarity=0.076 Sum_probs=41.5
Q ss_pred CCeEEEEecccchhHHHHhh----cCCeEEEEeCCHHHHHHH-HHHHHHcCCCcEEEEeCchhchhhhcCCCCCCCcEEE
Q 043853 68 SEIVLDLFCGTGTIGLTLAR----WVKHVYGYEVVPQAISDA-CRNAKLNNISNATFVQGDLNKIGGDFGNAFPKPDIVI 142 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la~----~~~~v~gvD~~~~~i~~a-~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~ii 142 (222)
+++||=.|+ +|.++..+++ .+.+|+++..++...... ...+.. ...+++++.+|+.+... +......+|+||
T Consensus 10 ~~~vlVTGa-tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~-~~~~~~~~d~Vi 86 (342)
T PLN02214 10 GKTVCVTGA-GGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG-GKERLILCKADLQDYEA-LKAAIDGCDGVF 86 (342)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC-CCCcEEEEecCcCChHH-HHHHHhcCCEEE
Confidence 567776664 6777765543 456899888765432211 111111 11348888899866431 110112578887
Q ss_pred ECC
Q 043853 143 SDP 145 (222)
Q Consensus 143 ~~p 145 (222)
...
T Consensus 87 h~A 89 (342)
T PLN02214 87 HTA 89 (342)
T ss_pred Eec
Confidence 765
No 493
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=57.88 E-value=72 Score=25.34 Aligned_cols=76 Identities=14% Similarity=0.055 Sum_probs=47.0
Q ss_pred CCeEEEEecccchhHHH----HhhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhh------hcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLT----LARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGG------DFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~----la~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~------~~~~~~~~ 137 (222)
++++|=.|++ |+++.. +++.+.+++.++.+....+.+...++..+. ++.++..|+.+... ........
T Consensus 11 ~k~vlVtG~s-~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 88 (255)
T PRK06113 11 GKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFALSKLGK 88 (255)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 6788888855 444443 444567898899888777766555544332 47777888765431 11111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|+++.+.
T Consensus 89 ~d~li~~a 96 (255)
T PRK06113 89 VDILVNNA 96 (255)
T ss_pred CCEEEECC
Confidence 89998875
No 494
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.65 E-value=66 Score=25.26 Aligned_cols=75 Identities=15% Similarity=0.091 Sum_probs=45.6
Q ss_pred CCeEEEEecccchhHHHH----hhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh------cCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTL----ARWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD------FGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~l----a~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 137 (222)
++++|=.|+ +|+++..+ ++.+.+|++++.++...+.....+.. + .++.++.+|+.+...- .......
T Consensus 5 ~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 5 GKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 456666654 45555544 44566899999998777666555543 2 2478888887654311 0011236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
+|+||.+.
T Consensus 82 ~d~vi~~a 89 (251)
T PRK07231 82 VDILVNNA 89 (251)
T ss_pred CCEEEECC
Confidence 89998875
No 495
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=57.62 E-value=71 Score=25.31 Aligned_cols=76 Identities=16% Similarity=0.118 Sum_probs=47.5
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchhhh------cCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIGGD------FGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~~~------~~~~~~~ 137 (222)
++++| +-.|+|+++..++ +.+.+|+.++.++...+.+.+.++..+. ++.++.+|+.+...- .......
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 45666 5555566665444 4566899999998877777666655443 478888887654311 1111135
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 85 ~d~vi~~a 92 (262)
T PRK13394 85 VDILVSNA 92 (262)
T ss_pred CCEEEECC
Confidence 89887765
No 496
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=57.45 E-value=28 Score=26.92 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=16.7
Q ss_pred HHhhcCCeEEEEeCCHHHHHHHH
Q 043853 84 TLARWVKHVYGYEVVPQAISDAC 106 (222)
Q Consensus 84 ~la~~~~~v~gvD~~~~~i~~a~ 106 (222)
.+|+.+.+|+|+|++++-++..+
T Consensus 18 ~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 18 ALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp HHHHTTSEEEEE-S-HHHHHHHH
T ss_pred HHHhCCCEEEEEeCChHHHHHHh
Confidence 55566789999999999887665
No 497
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=57.24 E-value=69 Score=25.50 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=41.4
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~ 137 (222)
++.+|=.|+ +|+++.+++ +.+.+|++++.++. +...+.+...+. ++..+..|+.+.. .........
T Consensus 10 ~k~~lItG~-~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 85 (253)
T PRK08993 10 GKVAVVTGC-DTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGR-RFLSLTADLRKIDGIPALLERAVAEFGH 85 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 567777775 455555444 45678998887642 222233333332 4777888875431 111111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 86 ~D~li~~A 93 (253)
T PRK08993 86 IDILVNNA 93 (253)
T ss_pred CCEEEECC
Confidence 89998876
No 498
>PLN02780 ketoreductase/ oxidoreductase
Probab=57.08 E-value=58 Score=27.40 Aligned_cols=57 Identities=18% Similarity=0.055 Sum_probs=37.4
Q ss_pred CCeEEEEecccchhHH----HHhhcCCeEEEEeCCHHHHHHHHHHHHHcC-CCcEEEEeCchh
Q 043853 68 SEIVLDLFCGTGTIGL----TLARWVKHVYGYEVVPQAISDACRNAKLNN-ISNATFVQGDLN 125 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~----~la~~~~~v~gvD~~~~~i~~a~~n~~~~~-~~~v~~~~~d~~ 125 (222)
++++|=.|++. +++. .+++.+.+|+.++.+++.++...+.++... -.++..+..|+.
T Consensus 53 g~~~lITGAs~-GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 53 GSWALVTGPTD-GIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 57788777644 4444 444556799999999988887776665431 123566666664
No 499
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.04 E-value=29 Score=28.54 Aligned_cols=84 Identities=14% Similarity=0.074 Sum_probs=50.1
Q ss_pred CCCeEEEEecccchhHHHHhhcCC----eEEEEeCCHHH------HHHHHHHHHHcCCCc-EEEEeCchhchhhhcCCCC
Q 043853 67 GSEIVLDLFCGTGTIGLTLARWVK----HVYGYEVVPQA------ISDACRNAKLNNISN-ATFVQGDLNKIGGDFGNAF 135 (222)
Q Consensus 67 ~~~~vlDlg~G~G~~~~~la~~~~----~v~gvD~~~~~------i~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~ 135 (222)
+..+|+.+|=|-=.++..++..+. .+++..++..- ..-++.|+.....=+ .-+...|++.+.....-..
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~sl~~~~~~~~ 135 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHGVDVTSLKFHADLRL 135 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEecccceeEEecccccc
Confidence 457899888887777777776532 66666655443 223455554432212 2445557766654222223
Q ss_pred CCCcEEEECCCCCCc
Q 043853 136 PKPDIVISDPNRPGM 150 (222)
Q Consensus 136 ~~fD~ii~~pp~~~~ 150 (222)
.+||-||.|.|..|.
T Consensus 136 ~~~d~IiFNFPH~G~ 150 (282)
T KOG4174|consen 136 QRYDNIIFNFPHSGK 150 (282)
T ss_pred cccceEEEcCCCCCC
Confidence 589999999986554
No 500
>PRK06949 short chain dehydrogenase; Provisional
Probab=57.00 E-value=74 Score=25.20 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=47.4
Q ss_pred CCeEEEEecccchhHHHHh----hcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEeCchhchh------hhcCCCCCC
Q 043853 68 SEIVLDLFCGTGTIGLTLA----RWVKHVYGYEVVPQAISDACRNAKLNNISNATFVQGDLNKIG------GDFGNAFPK 137 (222)
Q Consensus 68 ~~~vlDlg~G~G~~~~~la----~~~~~v~gvD~~~~~i~~a~~n~~~~~~~~v~~~~~d~~~~~------~~~~~~~~~ 137 (222)
++++|=.| |+|.++..++ +.+.+|++++.+++.++.....+...+. ++.++.+|+.+.. .......+.
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEAGT 86 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 56777777 5666665554 3456899999998887776666544332 4777888875431 111111236
Q ss_pred CcEEEECC
Q 043853 138 PDIVISDP 145 (222)
Q Consensus 138 fD~ii~~p 145 (222)
.|+++.+.
T Consensus 87 ~d~li~~a 94 (258)
T PRK06949 87 IDILVNNS 94 (258)
T ss_pred CCEEEECC
Confidence 89988865
Done!