Query 043855
Match_columns 946
No_of_seqs 724 out of 4908
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-90 2.5E-95 818.7 46.6 817 9-915 5-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.4E-64 3E-69 633.2 52.3 480 182-698 182-692 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 5.3E-44 1.1E-48 384.9 13.4 278 189-473 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.3E-25 2.8E-30 283.2 18.9 328 592-944 139-493 (968)
5 PLN00113 leucine-rich repeat r 99.9 5.1E-25 1.1E-29 277.8 16.9 330 586-945 181-542 (968)
6 KOG0444 Cytoskeletal regulator 99.9 9.4E-25 2E-29 232.4 -5.6 318 538-897 55-376 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 1.4E-23 2.9E-28 223.6 -4.1 318 557-918 49-375 (1255)
8 PLN03210 Resistant to P. syrin 99.8 1.7E-20 3.8E-25 236.2 20.6 314 589-943 554-910 (1153)
9 KOG4194 Membrane glycoprotein 99.8 3.4E-21 7.3E-26 204.7 3.3 309 591-934 123-447 (873)
10 KOG4194 Membrane glycoprotein 99.8 1.5E-20 3.2E-25 199.8 3.0 277 588-894 144-427 (873)
11 KOG0472 Leucine-rich repeat pr 99.8 3.6E-21 7.9E-26 195.8 -5.2 223 558-812 86-308 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 1E-19 2.3E-24 185.3 -7.8 234 588-835 63-308 (565)
13 KOG0618 Serine/threonine phosp 99.7 1.5E-19 3.3E-24 202.7 -8.9 37 775-813 240-276 (1081)
14 PRK15387 E3 ubiquitin-protein 99.6 8.4E-16 1.8E-20 179.3 12.7 79 593-681 201-279 (788)
15 KOG0618 Serine/threonine phosp 99.6 6E-18 1.3E-22 190.1 -4.9 165 767-945 255-425 (1081)
16 KOG4658 Apoptotic ATPase [Sign 99.6 1.6E-15 3.5E-20 181.0 6.3 333 558-945 518-866 (889)
17 PRK15370 E3 ubiquitin-protein 99.5 1.5E-14 3.3E-19 170.2 10.7 242 593-917 178-427 (754)
18 PRK15387 E3 ubiquitin-protein 99.5 7E-14 1.5E-18 163.4 13.0 88 594-695 223-310 (788)
19 PRK15370 E3 ubiquitin-protein 99.4 2.2E-13 4.8E-18 160.5 10.0 227 593-894 199-426 (754)
20 PRK04841 transcriptional regul 99.4 1.1E-11 2.4E-16 156.1 24.9 293 184-521 14-332 (903)
21 KOG0617 Ras suppressor protein 99.4 6.8E-15 1.5E-19 133.1 -4.8 42 770-813 144-185 (264)
22 PRK00411 cdc6 cell division co 99.4 9.8E-11 2.1E-15 132.0 26.0 302 182-500 28-358 (394)
23 KOG0617 Ras suppressor protein 99.4 1.2E-14 2.5E-19 131.6 -5.1 150 561-721 31-181 (264)
24 KOG4237 Extracellular matrix p 99.3 1.3E-13 2.8E-18 141.4 -3.3 231 591-835 89-357 (498)
25 TIGR02928 orc1/cdc6 family rep 99.3 1.2E-09 2.7E-14 121.8 28.1 302 184-501 15-351 (365)
26 KOG4237 Extracellular matrix p 99.2 5.4E-13 1.2E-17 136.8 -2.3 258 595-862 69-354 (498)
27 TIGR03015 pepcterm_ATPase puta 99.2 1E-09 2.3E-14 116.8 21.2 182 211-398 43-242 (269)
28 cd00116 LRR_RI Leucine-rich re 99.1 4E-12 8.6E-17 139.5 -4.3 84 591-674 21-119 (319)
29 TIGR00635 ruvB Holliday juncti 99.1 5.5E-09 1.2E-13 113.3 19.3 278 184-501 4-290 (305)
30 PRK00080 ruvB Holliday junctio 99.1 8.3E-09 1.8E-13 112.5 20.2 278 184-501 25-311 (328)
31 PF01637 Arch_ATPase: Archaeal 99.1 8.9E-10 1.9E-14 114.8 12.1 194 186-393 1-233 (234)
32 cd00116 LRR_RI Leucine-rich re 99.0 3.6E-11 7.9E-16 131.8 0.6 240 558-834 18-288 (319)
33 COG2909 MalT ATP-dependent tra 99.0 9.2E-09 2E-13 117.0 19.1 290 194-522 25-339 (894)
34 COG3899 Predicted ATPase [Gene 99.0 6.9E-09 1.5E-13 125.4 16.9 311 185-520 1-385 (849)
35 PF05729 NACHT: NACHT domain 99.0 3.3E-09 7.2E-14 103.8 10.4 142 212-360 1-162 (166)
36 PTZ00112 origin recognition co 98.9 7.9E-08 1.7E-12 110.3 20.2 305 183-500 754-1086(1164)
37 PF14580 LRR_9: Leucine-rich r 98.8 2.1E-09 4.6E-14 103.3 4.6 129 560-699 16-152 (175)
38 KOG4341 F-box protein containi 98.8 1.8E-10 4E-15 119.6 -2.9 83 594-676 139-229 (483)
39 COG2256 MGS1 ATPase related to 98.8 2.6E-08 5.7E-13 104.1 12.7 174 181-390 27-208 (436)
40 COG4886 Leucine-rich repeat (L 98.8 2.9E-09 6.2E-14 120.3 5.4 183 588-818 111-294 (394)
41 KOG0532 Leucine-rich repeat (L 98.8 2.1E-10 4.5E-15 123.5 -4.8 109 584-695 89-197 (722)
42 KOG0532 Leucine-rich repeat (L 98.8 3.3E-10 7.2E-15 121.9 -4.5 192 593-834 75-270 (722)
43 PRK13342 recombination factor 98.7 1.9E-07 4.2E-12 105.0 14.6 178 185-396 13-198 (413)
44 PRK05564 DNA polymerase III su 98.7 6.3E-07 1.4E-11 97.1 17.6 180 184-394 4-190 (313)
45 PRK06893 DNA replication initi 98.7 1.6E-07 3.4E-12 96.5 11.8 156 211-398 39-207 (229)
46 KOG3207 Beta-tubulin folding c 98.7 7.6E-09 1.7E-13 108.4 1.6 63 611-674 116-183 (505)
47 PF14580 LRR_9: Leucine-rich r 98.6 1.4E-08 3.1E-13 97.6 2.7 102 590-695 16-121 (175)
48 PRK14961 DNA polymerase III su 98.6 1.9E-06 4.1E-11 95.1 18.7 182 184-393 16-219 (363)
49 KOG2028 ATPase related to the 98.6 8.7E-07 1.9E-11 90.8 13.8 157 209-388 160-330 (554)
50 COG4886 Leucine-rich repeat (L 98.6 5.2E-08 1.1E-12 110.0 5.7 198 596-841 96-294 (394)
51 PRK14949 DNA polymerase III su 98.5 1.8E-06 3.9E-11 101.2 17.2 183 184-394 16-220 (944)
52 PRK14960 DNA polymerase III su 98.5 2.1E-06 4.5E-11 97.6 17.0 182 184-393 15-218 (702)
53 PRK12323 DNA polymerase III su 98.5 1.9E-06 4.1E-11 97.7 16.4 180 184-394 16-225 (700)
54 PF13401 AAA_22: AAA domain; P 98.5 1.7E-07 3.8E-12 87.4 6.6 118 210-330 3-125 (131)
55 PRK07003 DNA polymerase III su 98.5 2.7E-06 5.8E-11 97.8 17.1 184 184-394 16-221 (830)
56 PRK12402 replication factor C 98.5 2.5E-06 5.4E-11 94.2 16.6 199 184-393 15-225 (337)
57 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.3E-06 2.8E-11 90.3 13.1 172 189-398 22-205 (226)
58 PRK14963 DNA polymerase III su 98.5 7.3E-07 1.6E-11 101.4 12.0 198 184-391 14-214 (504)
59 PRK04195 replication factor C 98.5 1.1E-05 2.5E-10 92.6 21.9 247 184-473 14-271 (482)
60 PRK14957 DNA polymerase III su 98.5 4.6E-06 9.9E-11 95.0 17.2 184 184-395 16-222 (546)
61 KOG1259 Nischarin, modulator o 98.5 2.3E-08 4.9E-13 99.4 -1.2 98 591-692 282-379 (490)
62 KOG1259 Nischarin, modulator o 98.4 5.4E-08 1.2E-12 96.8 1.4 129 558-697 279-409 (490)
63 PRK06645 DNA polymerase III su 98.4 8.2E-06 1.8E-10 92.4 18.1 192 184-391 21-226 (507)
64 KOG1909 Ran GTPase-activating 98.4 3.3E-08 7.2E-13 101.0 -1.0 90 585-674 22-131 (382)
65 PF13191 AAA_16: AAA ATPase do 98.4 6.2E-07 1.3E-11 89.5 8.1 49 185-236 1-49 (185)
66 KOG3207 Beta-tubulin folding c 98.4 9.4E-08 2E-12 100.4 2.0 131 559-694 142-278 (505)
67 PRK14956 DNA polymerase III su 98.4 7.1E-06 1.5E-10 90.9 16.3 197 184-392 18-220 (484)
68 cd01128 rho_factor Transcripti 98.4 4.7E-07 1E-11 93.0 6.7 92 210-302 15-114 (249)
69 COG1474 CDC6 Cdc6-related prot 98.4 2.1E-05 4.5E-10 85.8 19.7 206 186-396 19-240 (366)
70 cd00009 AAA The AAA+ (ATPases 98.4 2.3E-06 4.9E-11 81.7 11.0 124 187-331 1-130 (151)
71 PLN03025 replication factor C 98.4 7.4E-06 1.6E-10 89.0 16.0 182 184-391 13-197 (319)
72 PF13173 AAA_14: AAA domain 98.4 7.5E-07 1.6E-11 82.4 7.1 119 212-353 3-127 (128)
73 PLN03150 hypothetical protein; 98.4 4.7E-07 1E-11 107.1 6.8 92 594-685 419-512 (623)
74 PRK08691 DNA polymerase III su 98.4 6.8E-06 1.5E-10 94.5 15.7 183 184-394 16-220 (709)
75 PF13855 LRR_8: Leucine rich r 98.4 4E-07 8.6E-12 71.7 4.0 57 593-649 1-59 (61)
76 TIGR02397 dnaX_nterm DNA polym 98.3 2E-05 4.4E-10 87.6 19.0 184 184-395 14-219 (355)
77 PRK00440 rfc replication facto 98.3 1.4E-05 3E-10 87.5 17.5 181 184-392 17-201 (319)
78 TIGR02903 spore_lon_C ATP-depe 98.3 1.2E-05 2.6E-10 94.4 17.7 203 184-397 154-398 (615)
79 PRK07471 DNA polymerase III su 98.3 1.6E-05 3.6E-10 86.7 17.6 195 184-395 19-239 (365)
80 PRK14951 DNA polymerase III su 98.3 1.4E-05 3E-10 92.4 17.7 195 184-394 16-225 (618)
81 PRK07994 DNA polymerase III su 98.3 8.5E-06 1.9E-10 94.3 15.9 196 184-395 16-221 (647)
82 PRK14964 DNA polymerase III su 98.3 1.3E-05 2.8E-10 90.0 16.9 182 184-392 13-215 (491)
83 PLN03150 hypothetical protein; 98.3 7.9E-07 1.7E-11 105.2 7.6 109 565-679 420-531 (623)
84 KOG4341 F-box protein containi 98.3 3.8E-08 8.2E-13 102.8 -3.1 106 564-674 139-253 (483)
85 PRK05896 DNA polymerase III su 98.3 1.3E-05 2.9E-10 91.3 16.8 196 184-395 16-222 (605)
86 PTZ00202 tuzin; Provisional 98.3 1.9E-05 4.1E-10 84.6 16.6 168 181-360 259-433 (550)
87 PRK07940 DNA polymerase III su 98.3 1.7E-05 3.7E-10 87.4 16.9 183 185-395 6-214 (394)
88 PRK14962 DNA polymerase III su 98.3 1.5E-05 3.2E-10 90.0 16.6 188 184-398 14-223 (472)
89 PF05496 RuvB_N: Holliday junc 98.3 3.4E-06 7.3E-11 82.8 9.8 182 184-399 24-226 (233)
90 PRK14958 DNA polymerase III su 98.3 1.6E-05 3.4E-10 90.9 16.7 183 184-393 16-219 (509)
91 PRK09112 DNA polymerase III su 98.3 2.5E-05 5.4E-10 84.9 17.2 197 184-395 23-241 (351)
92 PRK13341 recombination factor 98.3 5.5E-06 1.2E-10 98.0 12.7 171 184-388 28-211 (725)
93 KOG1909 Ran GTPase-activating 98.3 8.8E-08 1.9E-12 98.0 -1.9 120 735-865 179-309 (382)
94 TIGR00678 holB DNA polymerase 98.3 2.8E-05 6E-10 77.5 15.9 91 290-390 95-187 (188)
95 PRK08727 hypothetical protein; 98.3 1.6E-05 3.6E-10 81.8 14.3 148 212-391 42-201 (233)
96 PRK14955 DNA polymerase III su 98.2 2.1E-05 4.6E-10 87.9 15.5 201 184-393 16-227 (397)
97 KOG2120 SCF ubiquitin ligase, 98.2 3.1E-08 6.7E-13 98.6 -6.4 91 737-836 256-350 (419)
98 PRK14969 DNA polymerase III su 98.2 3.1E-05 6.7E-10 89.1 16.8 181 184-391 16-217 (527)
99 PRK09111 DNA polymerase III su 98.2 3.4E-05 7.3E-10 89.5 17.0 199 184-395 24-234 (598)
100 PRK09376 rho transcription ter 98.2 2.1E-06 4.5E-11 91.6 6.4 99 195-301 158-266 (416)
101 PRK09087 hypothetical protein; 98.2 2.1E-05 4.5E-10 80.2 13.5 142 211-395 44-196 (226)
102 PRK08084 DNA replication initi 98.2 2.2E-05 4.7E-10 81.0 13.6 155 211-397 45-212 (235)
103 KOG2227 Pre-initiation complex 98.2 4.4E-05 9.6E-10 81.8 15.5 214 182-398 148-376 (529)
104 KOG0531 Protein phosphatase 1, 98.2 6.5E-07 1.4E-11 101.2 1.9 108 586-697 88-196 (414)
105 PRK14952 DNA polymerase III su 98.2 7.1E-05 1.5E-09 86.3 18.2 198 184-397 13-223 (584)
106 PF13855 LRR_8: Leucine rich r 98.2 1.8E-06 4E-11 67.9 3.7 58 616-674 1-60 (61)
107 KOG2120 SCF ubiquitin ligase, 98.1 7.2E-08 1.6E-12 96.0 -5.5 81 594-674 186-271 (419)
108 PRK14959 DNA polymerase III su 98.1 7.1E-05 1.5E-09 85.9 17.3 199 184-398 16-225 (624)
109 PRK07764 DNA polymerase III su 98.1 6.7E-05 1.5E-09 90.1 17.6 180 184-392 15-219 (824)
110 KOG0531 Protein phosphatase 1, 98.1 4.6E-07 9.9E-12 102.5 -0.7 104 591-698 70-173 (414)
111 PRK08903 DnaA regulatory inact 98.1 3.6E-05 7.8E-10 79.4 13.4 153 210-398 41-203 (227)
112 PRK14970 DNA polymerase III su 98.1 0.0001 2.2E-09 82.0 18.0 181 184-391 17-206 (367)
113 PRK07133 DNA polymerase III su 98.1 0.0001 2.2E-09 86.0 18.1 191 184-393 18-218 (725)
114 TIGR01242 26Sp45 26S proteasom 98.1 8.5E-06 1.8E-10 90.3 8.7 181 182-388 120-328 (364)
115 PRK14950 DNA polymerase III su 98.1 0.00013 2.7E-09 85.8 18.8 198 184-396 16-223 (585)
116 PRK05642 DNA replication initi 98.1 5.4E-05 1.2E-09 77.9 14.0 156 211-398 45-212 (234)
117 PRK15386 type III secretion pr 98.1 1.6E-05 3.4E-10 86.1 10.2 58 774-838 50-108 (426)
118 COG2255 RuvB Holliday junction 98.1 7.7E-05 1.7E-09 74.9 13.8 180 184-397 26-226 (332)
119 PRK14953 DNA polymerase III su 98.1 0.0002 4.4E-09 81.4 19.2 184 184-395 16-221 (486)
120 PHA02544 44 clamp loader, smal 98.0 3.7E-05 8E-10 83.8 12.7 148 184-359 21-171 (316)
121 TIGR00767 rho transcription te 98.0 1.1E-05 2.3E-10 86.9 7.4 92 210-302 167-266 (415)
122 COG3903 Predicted ATPase [Gene 98.0 1E-05 2.2E-10 85.8 7.0 288 210-518 13-311 (414)
123 PRK14971 DNA polymerase III su 98.0 0.00022 4.7E-09 83.5 18.4 182 184-393 17-221 (614)
124 PRK15386 type III secretion pr 98.0 2E-05 4.3E-10 85.3 9.0 65 588-657 47-112 (426)
125 CHL00181 cbbX CbbX; Provisiona 98.0 0.00032 6.8E-09 74.4 18.0 136 211-363 59-211 (287)
126 PRK08451 DNA polymerase III su 98.0 0.00025 5.5E-09 80.6 18.2 179 184-394 14-218 (535)
127 PRK14954 DNA polymerase III su 98.0 0.00022 4.7E-09 83.0 17.9 201 184-393 16-228 (620)
128 PRK14948 DNA polymerase III su 98.0 0.00025 5.4E-09 83.0 18.5 198 184-395 16-223 (620)
129 PF12799 LRR_4: Leucine Rich r 98.0 6.7E-06 1.5E-10 59.1 3.4 33 617-649 2-34 (44)
130 PRK06305 DNA polymerase III su 98.0 0.00023 5E-09 80.4 17.1 182 184-394 17-223 (451)
131 PF12799 LRR_4: Leucine Rich r 97.9 7.9E-06 1.7E-10 58.7 3.3 40 593-632 1-40 (44)
132 PRK11331 5-methylcytosine-spec 97.9 5.5E-05 1.2E-09 82.9 11.3 111 184-306 175-287 (459)
133 PF00308 Bac_DnaA: Bacterial d 97.9 0.00011 2.3E-09 74.8 12.4 161 210-395 33-209 (219)
134 KOG1859 Leucine-rich repeat pr 97.9 3.4E-07 7.4E-12 101.8 -6.6 77 617-697 165-242 (1096)
135 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00012 2.6E-09 89.1 14.4 179 184-387 187-389 (852)
136 TIGR02881 spore_V_K stage V sp 97.9 0.00022 4.7E-09 75.1 14.4 161 185-362 7-192 (261)
137 PRK05563 DNA polymerase III su 97.9 0.00052 1.1E-08 79.8 18.6 193 184-392 16-218 (559)
138 PF14516 AAA_35: AAA-like doma 97.9 0.0023 4.9E-08 69.7 22.2 201 184-401 11-246 (331)
139 PRK06647 DNA polymerase III su 97.9 0.00065 1.4E-08 78.6 18.8 195 184-394 16-220 (563)
140 PF05621 TniB: Bacterial TniB 97.9 0.00055 1.2E-08 70.9 16.2 197 192-393 45-260 (302)
141 TIGR02880 cbbX_cfxQ probable R 97.8 0.00043 9.4E-09 73.4 15.9 134 212-362 59-209 (284)
142 PRK14087 dnaA chromosomal repl 97.8 0.00042 9.1E-09 78.4 16.5 169 211-396 141-321 (450)
143 PRK14965 DNA polymerase III su 97.8 0.00048 1E-08 80.5 17.2 195 184-394 16-221 (576)
144 KOG2543 Origin recognition com 97.8 0.00093 2E-08 70.1 16.8 165 183-360 5-192 (438)
145 PRK05707 DNA polymerase III su 97.8 0.00054 1.2E-08 73.9 16.0 98 290-395 105-204 (328)
146 KOG4579 Leucine-rich repeat (L 97.8 1.9E-06 4.1E-11 76.2 -2.3 96 595-692 29-128 (177)
147 TIGR02639 ClpA ATP-dependent C 97.8 0.00018 3.9E-09 87.1 13.6 155 184-361 182-358 (731)
148 KOG0989 Replication factor C, 97.8 0.0002 4.4E-09 72.8 11.5 183 184-388 36-224 (346)
149 PRK03992 proteasome-activating 97.8 0.00015 3.2E-09 80.8 11.4 180 182-387 129-336 (389)
150 PRK06620 hypothetical protein; 97.7 0.00029 6.3E-09 71.2 12.0 136 212-392 45-187 (214)
151 TIGR00362 DnaA chromosomal rep 97.7 0.0008 1.7E-08 75.9 16.1 158 211-391 136-307 (405)
152 PRK07399 DNA polymerase III su 97.7 0.0013 2.9E-08 70.5 16.1 197 185-395 5-222 (314)
153 CHL00095 clpC Clp protease ATP 97.6 0.00031 6.8E-09 86.1 12.5 154 184-359 179-352 (821)
154 KOG2982 Uncharacterized conser 97.6 9.4E-06 2E-10 81.3 -0.7 203 591-832 69-287 (418)
155 PF05673 DUF815: Protein of un 97.6 0.0021 4.5E-08 64.5 15.3 125 181-333 24-153 (249)
156 KOG2982 Uncharacterized conser 97.6 1.2E-05 2.7E-10 80.5 -0.3 211 591-840 43-265 (418)
157 KOG4579 Leucine-rich repeat (L 97.6 1.6E-05 3.5E-10 70.4 0.5 96 585-682 45-141 (177)
158 PRK12422 chromosomal replicati 97.6 0.00084 1.8E-08 75.6 13.9 154 211-387 141-306 (445)
159 KOG3665 ZYG-1-like serine/thre 97.6 2.9E-05 6.3E-10 91.6 2.3 83 637-722 146-229 (699)
160 PRK08769 DNA polymerase III su 97.6 0.0024 5.2E-08 68.2 16.1 96 290-395 112-209 (319)
161 PRK08058 DNA polymerase III su 97.5 0.0016 3.4E-08 70.9 14.9 164 185-360 6-181 (329)
162 PRK14088 dnaA chromosomal repl 97.5 0.0012 2.7E-08 74.5 14.4 157 211-389 130-300 (440)
163 PRK06090 DNA polymerase III su 97.5 0.0041 8.9E-08 66.4 17.0 178 192-395 11-202 (319)
164 PF13177 DNA_pol3_delta2: DNA 97.5 0.0014 3.1E-08 63.1 12.1 139 188-349 1-162 (162)
165 COG0593 DnaA ATPase involved i 97.5 0.0016 3.5E-08 70.9 13.8 135 210-364 112-260 (408)
166 PRK00149 dnaA chromosomal repl 97.5 0.002 4.4E-08 73.6 15.6 156 211-391 148-319 (450)
167 COG5238 RNA1 Ran GTPase-activa 97.5 3.8E-05 8.2E-10 76.1 1.2 92 586-678 23-134 (388)
168 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0014 3E-08 80.8 14.8 155 184-361 173-349 (852)
169 PF00004 AAA: ATPase family as 97.5 0.00023 4.9E-09 66.3 6.3 69 214-303 1-70 (132)
170 COG5238 RNA1 Ran GTPase-activa 97.4 9.2E-06 2E-10 80.3 -3.4 256 611-897 25-316 (388)
171 PRK11034 clpA ATP-dependent Cl 97.4 0.00077 1.7E-08 80.5 11.8 157 184-361 186-362 (758)
172 TIGR00763 lon ATP-dependent pr 97.4 0.0057 1.2E-07 74.6 19.3 163 184-360 320-504 (775)
173 KOG3665 ZYG-1-like serine/thre 97.4 9.6E-05 2.1E-09 87.3 3.9 108 560-674 145-261 (699)
174 PRK08116 hypothetical protein; 97.4 0.0005 1.1E-08 72.1 8.8 104 212-331 115-221 (268)
175 PRK10787 DNA-binding ATP-depen 97.4 0.0017 3.7E-08 78.3 14.3 166 183-361 321-506 (784)
176 COG3267 ExeA Type II secretory 97.4 0.0047 1E-07 61.7 14.6 182 210-396 50-247 (269)
177 PRK10865 protein disaggregatio 97.4 0.0018 3.9E-08 79.4 14.1 157 184-361 178-354 (857)
178 KOG1859 Leucine-rich repeat pr 97.4 5.8E-06 1.3E-10 92.3 -6.5 101 591-696 185-288 (1096)
179 smart00382 AAA ATPases associa 97.4 0.00088 1.9E-08 63.1 9.2 88 212-304 3-91 (148)
180 PTZ00361 26 proteosome regulat 97.4 0.00064 1.4E-08 75.8 9.1 158 184-362 183-368 (438)
181 PRK14086 dnaA chromosomal repl 97.3 0.0026 5.6E-08 73.1 13.7 154 212-388 315-482 (617)
182 TIGR00602 rad24 checkpoint pro 97.3 0.0014 3E-08 76.3 11.7 50 184-234 84-133 (637)
183 PRK06871 DNA polymerase III su 97.3 0.011 2.4E-07 63.3 17.6 179 192-393 10-202 (325)
184 TIGR03689 pup_AAA proteasome A 97.3 0.0035 7.5E-08 71.1 13.9 165 184-361 182-378 (512)
185 PRK08118 topology modulation p 97.3 0.00013 2.7E-09 70.8 2.1 34 213-246 3-37 (167)
186 KOG1514 Origin recognition com 97.2 0.0054 1.2E-07 69.6 14.4 210 185-398 397-625 (767)
187 KOG2004 Mitochondrial ATP-depe 97.2 0.0037 8E-08 70.8 13.1 106 182-302 409-516 (906)
188 COG0466 Lon ATP-dependent Lon 97.2 0.00099 2.2E-08 75.6 8.7 167 181-362 320-509 (782)
189 CHL00176 ftsH cell division pr 97.2 0.0029 6.2E-08 74.4 12.7 177 184-386 183-386 (638)
190 PRK06964 DNA polymerase III su 97.2 0.011 2.3E-07 63.9 16.0 94 290-395 131-226 (342)
191 PRK10536 hypothetical protein; 97.2 0.0027 5.8E-08 64.6 10.6 135 184-331 55-213 (262)
192 PF04665 Pox_A32: Poxvirus A32 97.2 0.00075 1.6E-08 68.3 6.6 37 212-250 14-50 (241)
193 PTZ00454 26S protease regulato 97.2 0.0047 1E-07 68.5 13.2 179 184-388 145-351 (398)
194 TIGR02640 gas_vesic_GvpN gas v 97.1 0.011 2.3E-07 62.2 15.1 43 212-259 22-64 (262)
195 PRK07993 DNA polymerase III su 97.1 0.02 4.4E-07 62.0 17.2 182 191-394 9-204 (334)
196 KOG1644 U2-associated snRNP A' 97.1 0.00062 1.3E-08 65.0 4.8 103 592-697 41-150 (233)
197 PRK08181 transposase; Validate 97.1 0.00093 2E-08 69.6 6.6 101 212-331 107-209 (269)
198 KOG2123 Uncharacterized conser 97.1 4.6E-05 1E-09 75.8 -3.0 102 592-696 18-126 (388)
199 COG1373 Predicted ATPase (AAA+ 97.1 0.0078 1.7E-07 67.1 14.1 226 213-500 39-270 (398)
200 TIGR01241 FtsH_fam ATP-depende 97.1 0.0055 1.2E-07 70.9 13.3 178 184-387 55-259 (495)
201 TIGR02639 ClpA ATP-dependent C 97.0 0.007 1.5E-07 73.5 14.4 120 184-316 454-578 (731)
202 KOG0741 AAA+-type ATPase [Post 97.0 0.018 4E-07 63.0 15.6 160 209-398 536-716 (744)
203 smart00763 AAA_PrkA PrkA AAA d 97.0 0.00059 1.3E-08 73.0 4.5 51 185-235 52-102 (361)
204 KOG1947 Leucine rich repeat pr 97.0 0.0001 2.2E-09 85.9 -1.6 236 615-918 187-440 (482)
205 PRK10865 protein disaggregatio 97.0 0.0054 1.2E-07 75.3 12.9 122 184-316 568-695 (857)
206 COG2812 DnaX DNA polymerase II 97.0 0.0028 6E-08 71.3 9.1 189 185-389 17-215 (515)
207 TIGR03345 VI_ClpV1 type VI sec 97.0 0.003 6.4E-08 77.2 10.1 137 184-330 566-718 (852)
208 PRK08939 primosomal protein Dn 96.9 0.003 6.4E-08 67.5 8.6 122 188-330 135-260 (306)
209 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0047 1E-07 76.1 11.2 123 184-316 565-692 (852)
210 PRK09361 radB DNA repair and r 96.8 0.0041 8.9E-08 64.0 8.5 47 209-258 21-67 (225)
211 PRK12608 transcription termina 96.8 0.0073 1.6E-07 65.0 10.2 102 194-301 121-230 (380)
212 PRK09183 transposase/IS protei 96.8 0.0016 3.4E-08 68.1 5.0 23 212-234 103-125 (259)
213 PF02562 PhoH: PhoH-like prote 96.8 0.0026 5.6E-08 62.9 6.1 128 188-331 4-156 (205)
214 PRK06526 transposase; Provisio 96.7 0.0024 5.1E-08 66.3 6.0 23 212-234 99-121 (254)
215 COG0470 HolB ATPase involved i 96.7 0.0094 2E-07 65.3 11.2 142 185-347 2-167 (325)
216 KOG0991 Replication factor C, 96.7 0.032 6.9E-07 54.6 12.7 44 184-233 27-70 (333)
217 COG0542 clpA ATP-binding subun 96.7 0.004 8.6E-08 73.0 7.8 123 184-317 491-619 (786)
218 KOG2739 Leucine-rich acidic nu 96.7 0.00086 1.9E-08 67.0 2.1 103 591-697 41-153 (260)
219 PF01695 IstB_IS21: IstB-like 96.7 0.0011 2.3E-08 65.0 2.7 101 211-331 47-150 (178)
220 CHL00095 clpC Clp protease ATP 96.7 0.0074 1.6E-07 74.2 10.6 137 184-330 509-661 (821)
221 TIGR02237 recomb_radB DNA repa 96.6 0.0063 1.4E-07 61.8 8.2 48 209-259 10-57 (209)
222 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0073 1.6E-07 62.6 8.8 92 209-301 17-125 (235)
223 COG1222 RPT1 ATP-dependent 26S 96.6 0.052 1.1E-06 57.0 14.6 189 184-399 151-372 (406)
224 PRK04132 replication factor C 96.6 0.046 9.9E-07 65.8 16.2 156 219-395 574-732 (846)
225 PRK06921 hypothetical protein; 96.6 0.0055 1.2E-07 64.2 7.6 37 211-249 117-154 (266)
226 PF10443 RNA12: RNA12 protein; 96.6 0.096 2.1E-06 57.1 16.8 200 189-404 1-288 (431)
227 COG2607 Predicted ATPase (AAA+ 96.6 0.032 7E-07 55.1 11.9 120 183-330 59-182 (287)
228 PRK08699 DNA polymerase III su 96.6 0.035 7.5E-07 60.0 13.6 71 290-360 112-184 (325)
229 TIGR02902 spore_lonB ATP-depen 96.5 0.011 2.3E-07 68.7 10.0 43 185-233 66-108 (531)
230 PF07728 AAA_5: AAA domain (dy 96.5 0.0011 2.3E-08 62.5 1.5 84 214-311 2-85 (139)
231 PRK12377 putative replication 96.5 0.0075 1.6E-07 62.1 7.7 102 211-330 101-205 (248)
232 PF13207 AAA_17: AAA domain; P 96.5 0.002 4.2E-08 58.9 3.1 22 213-234 1-22 (121)
233 KOG2228 Origin recognition com 96.5 0.022 4.8E-07 59.0 10.8 172 185-361 25-219 (408)
234 PRK07261 topology modulation p 96.5 0.0049 1.1E-07 60.0 6.0 66 213-302 2-68 (171)
235 PRK05541 adenylylsulfate kinas 96.5 0.0046 9.9E-08 60.8 5.8 36 210-247 6-41 (176)
236 PRK04296 thymidine kinase; Pro 96.5 0.005 1.1E-07 61.2 6.0 113 212-331 3-116 (190)
237 COG1223 Predicted ATPase (AAA+ 96.4 0.041 9E-07 54.8 11.8 178 184-387 121-318 (368)
238 PRK07952 DNA replication prote 96.4 0.019 4.2E-07 58.9 9.8 103 211-330 99-204 (244)
239 PRK15455 PrkA family serine pr 96.4 0.0025 5.4E-08 71.7 3.5 49 185-233 77-125 (644)
240 cd01393 recA_like RecA is a b 96.3 0.022 4.7E-07 58.7 10.2 92 209-301 17-124 (226)
241 KOG2123 Uncharacterized conser 96.3 0.00039 8.4E-09 69.4 -2.8 98 562-669 18-123 (388)
242 PRK06696 uridine kinase; Valid 96.3 0.0048 1E-07 63.2 5.0 44 188-234 2-45 (223)
243 PF08423 Rad51: Rad51; InterP 96.3 0.01 2.2E-07 61.8 7.5 57 210-267 37-97 (256)
244 PRK11889 flhF flagellar biosyn 96.3 0.03 6.5E-07 60.6 10.9 89 210-302 240-331 (436)
245 PF00158 Sigma54_activat: Sigm 96.3 0.01 2.2E-07 57.4 6.8 45 186-234 1-45 (168)
246 PRK06835 DNA replication prote 96.3 0.0028 6.1E-08 68.2 3.3 102 212-330 184-288 (329)
247 PF07693 KAP_NTPase: KAP famil 96.3 0.15 3.3E-06 55.7 17.0 42 191-235 3-44 (325)
248 cd01394 radB RadB. The archaea 96.2 0.015 3.2E-07 59.5 8.2 44 209-254 17-60 (218)
249 PRK15429 formate hydrogenlyase 96.2 0.04 8.8E-07 66.7 13.2 134 184-331 376-521 (686)
250 PF14532 Sigma54_activ_2: Sigm 96.2 0.0038 8.3E-08 58.5 3.3 108 187-331 1-110 (138)
251 KOG1644 U2-associated snRNP A' 96.2 0.0059 1.3E-07 58.6 4.4 88 586-674 57-151 (233)
252 PRK11034 clpA ATP-dependent Cl 96.2 0.015 3.2E-07 69.8 9.0 119 184-316 458-582 (758)
253 CHL00195 ycf46 Ycf46; Provisio 96.2 0.027 5.9E-07 64.0 10.6 159 184-363 228-407 (489)
254 TIGR01243 CDC48 AAA family ATP 96.2 0.077 1.7E-06 64.8 15.2 179 184-388 453-657 (733)
255 cd00983 recA RecA is a bacter 96.2 0.0097 2.1E-07 63.4 6.4 86 209-301 53-143 (325)
256 KOG0733 Nuclear AAA ATPase (VC 96.1 0.097 2.1E-06 58.7 14.0 98 184-302 190-293 (802)
257 cd01133 F1-ATPase_beta F1 ATP 96.1 0.018 3.9E-07 59.6 8.1 89 210-300 68-172 (274)
258 TIGR01243 CDC48 AAA family ATP 96.1 0.026 5.6E-07 68.8 10.7 180 184-389 178-382 (733)
259 COG0572 Udk Uridine kinase [Nu 96.1 0.012 2.7E-07 58.1 6.4 79 209-292 6-85 (218)
260 PF00448 SRP54: SRP54-type pro 96.0 0.02 4.3E-07 56.9 7.4 89 211-301 1-93 (196)
261 PRK04301 radA DNA repair and r 95.9 0.021 4.6E-07 61.9 8.1 58 209-267 100-161 (317)
262 PRK13695 putative NTPase; Prov 95.9 0.0083 1.8E-07 58.8 4.5 22 213-234 2-23 (174)
263 PRK09354 recA recombinase A; P 95.9 0.018 3.8E-07 62.0 7.1 86 209-301 58-148 (349)
264 PRK05022 anaerobic nitric oxid 95.9 0.1 2.2E-06 60.6 14.1 135 183-331 186-332 (509)
265 COG1875 NYN ribonuclease and A 95.9 0.025 5.5E-07 59.4 7.9 133 186-330 226-387 (436)
266 KOG1969 DNA replication checkp 95.9 0.021 4.6E-07 65.1 7.9 75 209-304 324-400 (877)
267 TIGR02012 tigrfam_recA protein 95.9 0.017 3.7E-07 61.5 6.9 86 209-301 53-143 (321)
268 KOG2035 Replication factor C, 95.9 0.15 3.3E-06 51.6 12.9 183 186-391 15-225 (351)
269 PF00560 LRR_1: Leucine Rich R 95.9 0.0035 7.7E-08 37.3 1.0 18 618-635 2-19 (22)
270 cd01120 RecA-like_NTPases RecA 95.9 0.03 6.5E-07 54.1 8.2 40 213-254 1-40 (165)
271 PRK08233 hypothetical protein; 95.9 0.025 5.5E-07 55.8 7.8 24 211-234 3-26 (182)
272 COG0468 RecA RecA/RadA recombi 95.9 0.04 8.6E-07 57.4 9.3 90 209-301 58-151 (279)
273 PRK12724 flagellar biosynthesi 95.9 0.025 5.4E-07 62.1 8.1 25 210-234 222-246 (432)
274 COG1484 DnaC DNA replication p 95.9 0.02 4.4E-07 59.5 7.1 82 210-309 104-185 (254)
275 TIGR03499 FlhF flagellar biosy 95.8 0.027 6E-07 59.7 8.2 87 210-300 193-281 (282)
276 PF13604 AAA_30: AAA domain; P 95.8 0.018 3.8E-07 57.6 6.2 108 212-332 19-132 (196)
277 TIGR02238 recomb_DMC1 meiotic 95.8 0.02 4.3E-07 61.4 6.9 60 209-269 94-157 (313)
278 cd03238 ABC_UvrA The excision 95.8 0.055 1.2E-06 52.7 9.2 116 210-335 20-153 (176)
279 KOG2739 Leucine-rich acidic nu 95.7 0.0044 9.6E-08 62.1 1.6 82 613-697 40-126 (260)
280 COG0542 clpA ATP-binding subun 95.7 0.028 6.2E-07 66.1 8.3 154 184-360 170-345 (786)
281 TIGR02239 recomb_RAD51 DNA rep 95.7 0.044 9.6E-07 58.9 9.2 59 209-268 94-156 (316)
282 COG4608 AppF ABC-type oligopep 95.7 0.037 8E-07 56.4 7.8 125 210-338 38-177 (268)
283 PLN03187 meiotic recombination 95.7 0.027 5.9E-07 60.8 7.4 60 209-269 124-187 (344)
284 TIGR01817 nifA Nif-specific re 95.7 0.042 9.1E-07 64.5 9.6 135 183-331 195-341 (534)
285 cd03214 ABC_Iron-Siderophores_ 95.7 0.097 2.1E-06 51.6 10.8 122 210-334 24-161 (180)
286 PRK07132 DNA polymerase III su 95.6 0.76 1.6E-05 48.9 17.7 157 211-394 18-185 (299)
287 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.092 2E-06 49.5 9.7 105 211-335 26-131 (144)
288 PRK00625 shikimate kinase; Pro 95.5 0.11 2.3E-06 50.6 10.2 22 213-234 2-23 (173)
289 PRK11608 pspF phage shock prot 95.5 0.027 5.8E-07 61.3 6.7 133 185-331 7-151 (326)
290 TIGR02236 recomb_radA DNA repa 95.5 0.051 1.1E-06 58.9 8.9 57 210-267 94-154 (310)
291 cd03247 ABCC_cytochrome_bd The 95.5 0.043 9.4E-07 54.0 7.6 24 211-234 28-51 (178)
292 TIGR02974 phageshock_pspF psp 95.5 0.044 9.5E-07 59.5 8.2 45 186-234 1-45 (329)
293 PRK14722 flhF flagellar biosyn 95.5 0.039 8.4E-07 60.2 7.7 91 210-303 136-227 (374)
294 COG1618 Predicted nucleotide k 95.5 0.012 2.7E-07 54.3 3.2 24 211-234 5-28 (179)
295 KOG0735 AAA+-type ATPase [Post 95.4 0.027 5.8E-07 64.0 6.4 73 210-301 430-504 (952)
296 PTZ00301 uridine kinase; Provi 95.4 0.023 5E-07 57.0 5.5 23 211-233 3-25 (210)
297 KOG1051 Chaperone HSP104 and r 95.4 0.086 1.9E-06 63.2 10.9 112 184-309 562-678 (898)
298 PRK07667 uridine kinase; Provi 95.4 0.02 4.2E-07 57.2 4.9 38 193-234 3-40 (193)
299 cd01131 PilT Pilus retraction 95.4 0.013 2.8E-07 58.6 3.7 112 212-335 2-113 (198)
300 cd00544 CobU Adenosylcobinamid 95.4 0.03 6.6E-07 54.1 5.9 79 214-300 2-82 (169)
301 PLN03186 DNA repair protein RA 95.4 0.079 1.7E-06 57.4 9.7 59 209-268 121-183 (342)
302 cd00561 CobA_CobO_BtuR ATP:cor 95.4 0.053 1.1E-06 51.4 7.3 117 212-331 3-138 (159)
303 PRK06067 flagellar accessory p 95.4 0.055 1.2E-06 56.0 8.3 88 209-301 23-130 (234)
304 PLN00020 ribulose bisphosphate 95.4 0.033 7.3E-07 59.4 6.5 26 209-234 146-171 (413)
305 PRK10867 signal recognition pa 95.3 0.08 1.7E-06 59.2 9.8 25 209-233 98-122 (433)
306 TIGR00959 ffh signal recogniti 95.3 0.072 1.6E-06 59.5 9.4 26 209-234 97-122 (428)
307 TIGR01650 PD_CobS cobaltochela 95.3 0.55 1.2E-05 50.1 15.5 62 183-258 45-106 (327)
308 KOG0744 AAA+-type ATPase [Post 95.3 0.057 1.2E-06 55.7 7.6 80 211-301 177-260 (423)
309 PF08298 AAA_PrkA: PrkA AAA do 95.3 0.021 4.5E-07 60.7 4.7 51 183-233 60-110 (358)
310 KOG0733 Nuclear AAA ATPase (VC 95.3 0.23 5E-06 55.9 12.7 156 210-388 544-718 (802)
311 cd03222 ABC_RNaseL_inhibitor T 95.2 0.11 2.4E-06 50.6 9.4 24 211-234 25-48 (177)
312 PRK13948 shikimate kinase; Pro 95.2 0.15 3.3E-06 49.9 10.2 25 210-234 9-33 (182)
313 PRK12727 flagellar biosynthesi 95.2 0.087 1.9E-06 59.5 9.5 89 210-302 349-439 (559)
314 PRK05800 cobU adenosylcobinami 95.2 0.016 3.5E-07 56.2 3.3 81 213-300 3-85 (170)
315 PRK13531 regulatory ATPase Rav 95.2 0.021 4.5E-07 63.7 4.5 42 185-234 21-62 (498)
316 cd01122 GP4d_helicase GP4d_hel 95.2 0.16 3.5E-06 53.9 11.3 54 210-266 29-82 (271)
317 PF00560 LRR_1: Leucine Rich R 95.2 0.0092 2E-07 35.5 1.0 22 594-615 1-22 (22)
318 PF00485 PRK: Phosphoribulokin 95.2 0.015 3.2E-07 58.2 3.1 81 213-295 1-87 (194)
319 PRK12726 flagellar biosynthesi 95.2 0.15 3.2E-06 55.2 10.7 91 209-302 204-296 (407)
320 cd02019 NK Nucleoside/nucleoti 95.2 0.014 3.1E-07 46.9 2.4 22 213-234 1-22 (69)
321 PF13238 AAA_18: AAA domain; P 95.1 0.015 3.2E-07 53.7 2.9 21 214-234 1-21 (129)
322 KOG0924 mRNA splicing factor A 95.1 0.13 2.8E-06 58.1 10.4 142 193-347 361-529 (1042)
323 PRK12723 flagellar biosynthesi 95.1 0.11 2.5E-06 57.1 10.1 90 210-303 173-266 (388)
324 KOG0734 AAA+-type ATPase conta 95.1 0.068 1.5E-06 58.8 8.0 54 184-237 304-363 (752)
325 COG1102 Cmk Cytidylate kinase 95.1 0.022 4.8E-07 52.7 3.8 43 213-268 2-44 (179)
326 cd03228 ABCC_MRP_Like The MRP 95.1 0.11 2.3E-06 50.8 8.9 25 210-234 27-51 (171)
327 TIGR00390 hslU ATP-dependent p 95.1 0.06 1.3E-06 58.9 7.6 81 184-266 12-104 (441)
328 cd03223 ABCD_peroxisomal_ALDP 95.1 0.17 3.7E-06 49.1 10.1 120 210-335 26-152 (166)
329 cd03216 ABC_Carb_Monos_I This 95.0 0.066 1.4E-06 51.7 7.2 116 211-334 26-145 (163)
330 PF13671 AAA_33: AAA domain; P 95.0 0.018 4E-07 54.2 3.3 21 213-233 1-21 (143)
331 KOG1532 GTPase XAB1, interacts 95.0 0.075 1.6E-06 53.4 7.4 91 209-300 17-124 (366)
332 PRK05480 uridine/cytidine kina 95.0 0.019 4.1E-07 58.2 3.5 26 209-234 4-29 (209)
333 PF01583 APS_kinase: Adenylyls 95.0 0.027 5.7E-07 53.1 4.2 36 211-248 2-37 (156)
334 PF12775 AAA_7: P-loop contain 95.0 0.02 4.3E-07 60.2 3.7 95 194-308 23-117 (272)
335 PRK05439 pantothenate kinase; 95.0 0.13 2.9E-06 54.6 9.8 82 208-292 83-166 (311)
336 cd03281 ABC_MSH5_euk MutS5 hom 95.0 0.031 6.7E-07 56.6 4.9 23 211-233 29-51 (213)
337 COG2884 FtsE Predicted ATPase 95.0 0.19 4.2E-06 48.1 9.6 126 210-338 27-204 (223)
338 cd02025 PanK Pantothenate kina 95.0 0.084 1.8E-06 53.7 8.0 75 213-289 1-76 (220)
339 PTZ00035 Rad51 protein; Provis 95.0 0.18 3.8E-06 54.9 10.9 59 209-268 116-178 (337)
340 TIGR00235 udk uridine kinase. 94.9 0.02 4.3E-07 57.9 3.4 26 209-234 4-29 (207)
341 PRK00771 signal recognition pa 94.9 0.12 2.6E-06 57.9 9.8 26 209-234 93-118 (437)
342 KOG0728 26S proteasome regulat 94.9 1.4 3.1E-05 43.8 15.7 192 185-398 147-367 (404)
343 PRK14974 cell division protein 94.9 0.15 3.2E-06 55.1 10.0 91 210-303 139-234 (336)
344 PRK09270 nucleoside triphospha 94.9 0.11 2.4E-06 53.4 8.8 26 209-234 31-56 (229)
345 PF00154 RecA: recA bacterial 94.9 0.057 1.2E-06 57.4 6.7 87 209-302 51-142 (322)
346 TIGR00382 clpX endopeptidase C 94.9 0.13 2.9E-06 57.0 9.8 51 183-233 76-138 (413)
347 COG0464 SpoVK ATPases of the A 94.9 0.29 6.2E-06 57.0 13.2 158 184-362 242-424 (494)
348 PRK10733 hflB ATP-dependent me 94.9 0.09 1.9E-06 62.7 9.1 158 184-362 152-336 (644)
349 PRK10923 glnG nitrogen regulat 94.9 0.2 4.4E-06 58.0 11.9 46 185-234 139-184 (469)
350 KOG0473 Leucine-rich repeat pr 94.9 0.00094 2E-08 65.0 -6.1 86 588-674 37-122 (326)
351 TIGR00064 ftsY signal recognit 94.8 0.13 2.8E-06 54.2 9.1 91 209-302 70-165 (272)
352 COG1428 Deoxynucleoside kinase 94.8 0.019 4.2E-07 55.9 2.6 26 211-236 4-29 (216)
353 TIGR00554 panK_bact pantothena 94.8 0.12 2.7E-06 54.5 8.9 80 209-291 60-141 (290)
354 PRK05703 flhF flagellar biosyn 94.8 0.11 2.3E-06 58.5 8.9 88 211-302 221-310 (424)
355 cd03115 SRP The signal recogni 94.8 0.097 2.1E-06 51.2 7.7 22 213-234 2-23 (173)
356 KOG0731 AAA+-type ATPase conta 94.7 0.77 1.7E-05 54.1 15.7 183 184-391 311-521 (774)
357 PHA02244 ATPase-like protein 94.7 0.14 3E-06 55.2 9.1 22 213-234 121-142 (383)
358 PRK05201 hslU ATP-dependent pr 94.7 0.07 1.5E-06 58.4 7.0 81 184-266 15-107 (443)
359 COG0563 Adk Adenylate kinase a 94.7 0.048 1E-06 53.2 5.3 22 213-234 2-23 (178)
360 cd03246 ABCC_Protease_Secretio 94.7 0.11 2.5E-06 50.7 7.9 24 211-234 28-51 (173)
361 PRK05917 DNA polymerase III su 94.7 0.83 1.8E-05 48.0 14.5 131 192-348 5-154 (290)
362 PRK10820 DNA-binding transcrip 94.7 0.084 1.8E-06 61.4 8.0 133 185-331 205-349 (520)
363 PF05659 RPW8: Arabidopsis bro 94.7 0.55 1.2E-05 43.9 11.8 83 5-87 3-86 (147)
364 PRK06762 hypothetical protein; 94.7 0.025 5.4E-07 54.9 3.1 23 212-234 3-25 (166)
365 cd02028 UMPK_like Uridine mono 94.6 0.053 1.1E-06 53.2 5.4 22 213-234 1-22 (179)
366 PF07724 AAA_2: AAA domain (Cd 94.6 0.022 4.8E-07 55.2 2.7 42 211-254 3-45 (171)
367 COG1121 ZnuC ABC-type Mn/Zn tr 94.6 0.15 3.2E-06 52.1 8.6 121 211-333 30-201 (254)
368 TIGR01425 SRP54_euk signal rec 94.6 0.47 1E-05 52.8 13.1 25 209-233 98-122 (429)
369 cd01121 Sms Sms (bacterial rad 94.6 0.14 3.1E-06 56.3 9.2 83 210-300 81-167 (372)
370 PRK06002 fliI flagellum-specif 94.6 0.092 2E-06 58.4 7.6 89 210-301 164-264 (450)
371 cd01125 repA Hexameric Replica 94.6 0.2 4.3E-06 52.0 9.8 21 213-233 3-23 (239)
372 KOG0730 AAA+-type ATPase [Post 94.5 0.52 1.1E-05 53.8 13.3 56 184-241 434-496 (693)
373 PRK06547 hypothetical protein; 94.5 0.032 6.9E-07 54.2 3.5 26 209-234 13-38 (172)
374 PF03308 ArgK: ArgK protein; 94.5 0.057 1.2E-06 54.7 5.3 63 192-258 14-76 (266)
375 cd03230 ABC_DR_subfamily_A Thi 94.5 0.12 2.5E-06 50.6 7.5 119 211-335 26-159 (173)
376 PF00006 ATP-synt_ab: ATP synt 94.5 0.1 2.2E-06 52.4 7.2 84 211-300 15-114 (215)
377 PRK15115 response regulator Gl 94.4 0.28 6E-06 56.3 11.6 46 185-234 135-180 (444)
378 TIGR00150 HI0065_YjeE ATPase, 94.4 0.057 1.2E-06 49.4 4.6 41 191-235 6-46 (133)
379 PTZ00088 adenylate kinase 1; P 94.4 0.047 1E-06 55.7 4.5 22 213-234 8-29 (229)
380 PF07726 AAA_3: ATPase family 94.4 0.021 4.6E-07 51.2 1.7 27 214-242 2-28 (131)
381 PF08433 KTI12: Chromatin asso 94.4 0.095 2.1E-06 54.9 6.8 23 212-234 2-24 (270)
382 PRK03839 putative kinase; Prov 94.4 0.029 6.4E-07 55.3 2.9 22 213-234 2-23 (180)
383 KOG0738 AAA+-type ATPase [Post 94.4 0.15 3.2E-06 54.1 8.0 51 184-234 212-268 (491)
384 TIGR02858 spore_III_AA stage I 94.3 0.22 4.8E-06 52.1 9.4 130 192-336 97-234 (270)
385 PRK05342 clpX ATP-dependent pr 94.3 0.095 2.1E-06 58.4 7.1 50 184-233 71-130 (412)
386 COG1703 ArgK Putative periplas 94.3 0.055 1.2E-06 55.6 4.7 64 194-261 38-101 (323)
387 TIGR01360 aden_kin_iso1 adenyl 94.3 0.034 7.4E-07 55.3 3.3 25 210-234 2-26 (188)
388 PF00910 RNA_helicase: RNA hel 94.3 0.024 5.1E-07 50.3 1.9 21 214-234 1-21 (107)
389 COG1136 SalX ABC-type antimicr 94.3 0.37 7.9E-06 48.5 10.4 58 281-338 150-210 (226)
390 PHA00729 NTP-binding motif con 94.3 0.054 1.2E-06 54.4 4.5 25 210-234 16-40 (226)
391 COG4618 ArpD ABC-type protease 94.3 0.1 2.2E-06 57.6 6.8 23 211-233 362-384 (580)
392 cd02027 APSK Adenosine 5'-phos 94.3 0.086 1.9E-06 50.0 5.7 22 213-234 1-22 (149)
393 PRK10751 molybdopterin-guanine 94.3 0.047 1E-06 52.6 3.9 26 209-234 4-29 (173)
394 PRK04040 adenylate kinase; Pro 94.2 0.038 8.2E-07 54.6 3.2 23 212-234 3-25 (188)
395 PRK14721 flhF flagellar biosyn 94.2 0.22 4.7E-06 55.4 9.3 24 210-233 190-213 (420)
396 TIGR03877 thermo_KaiC_1 KaiC d 94.1 0.21 4.5E-06 51.7 8.8 49 209-261 19-67 (237)
397 PF06309 Torsin: Torsin; Inte 94.1 0.085 1.8E-06 47.3 4.9 50 185-234 26-76 (127)
398 PRK08972 fliI flagellum-specif 94.1 0.14 2.9E-06 56.8 7.5 88 210-301 161-262 (444)
399 COG1066 Sms Predicted ATP-depe 94.1 0.21 4.4E-06 53.8 8.5 84 210-302 92-179 (456)
400 PRK09519 recA DNA recombinatio 94.1 0.14 2.9E-06 61.1 8.0 86 209-301 58-148 (790)
401 PF03193 DUF258: Protein of un 94.0 0.073 1.6E-06 50.5 4.5 36 191-235 24-59 (161)
402 KOG1947 Leucine rich repeat pr 94.0 0.0064 1.4E-07 70.8 -3.3 160 774-942 186-367 (482)
403 TIGR02322 phosphon_PhnN phosph 93.9 0.041 8.8E-07 54.2 2.9 23 212-234 2-24 (179)
404 PF10236 DAP3: Mitochondrial r 93.9 0.59 1.3E-05 50.3 12.0 49 342-391 258-306 (309)
405 COG0467 RAD55 RecA-superfamily 93.9 0.11 2.3E-06 54.8 6.2 42 209-252 21-62 (260)
406 cd01135 V_A-ATPase_B V/A-type 93.9 0.23 5E-06 51.4 8.4 92 210-301 68-176 (276)
407 COG2842 Uncharacterized ATPase 93.9 0.61 1.3E-05 48.3 11.2 98 211-317 94-191 (297)
408 PTZ00494 tuzin-like protein; P 93.9 1.1 2.4E-05 49.0 13.4 167 181-360 368-543 (664)
409 PRK14723 flhF flagellar biosyn 93.9 0.39 8.5E-06 57.1 11.2 87 211-301 185-273 (767)
410 cd02023 UMPK Uridine monophosp 93.8 0.036 7.8E-07 55.6 2.4 21 213-233 1-21 (198)
411 TIGR01359 UMP_CMP_kin_fam UMP- 93.8 0.037 7.9E-07 54.8 2.4 22 213-234 1-22 (183)
412 PF00625 Guanylate_kin: Guanyl 93.8 0.057 1.2E-06 53.4 3.7 37 211-249 2-38 (183)
413 PF03205 MobB: Molybdopterin g 93.7 0.073 1.6E-06 49.7 4.1 39 212-251 1-39 (140)
414 PRK12597 F0F1 ATP synthase sub 93.7 0.15 3.2E-06 57.3 7.1 91 210-301 142-247 (461)
415 PRK00889 adenylylsulfate kinas 93.7 0.054 1.2E-06 53.1 3.4 25 210-234 3-27 (175)
416 PRK15453 phosphoribulokinase; 93.7 0.31 6.8E-06 50.5 8.9 80 209-290 3-89 (290)
417 KOG0727 26S proteasome regulat 93.7 0.33 7.1E-06 48.2 8.5 51 184-234 155-212 (408)
418 TIGR03575 selen_PSTK_euk L-ser 93.7 0.17 3.8E-06 54.5 7.3 21 214-234 2-22 (340)
419 cd02024 NRK1 Nicotinamide ribo 93.7 0.041 8.8E-07 54.0 2.3 22 213-234 1-22 (187)
420 cd03217 ABC_FeS_Assembly ABC-t 93.7 0.23 4.9E-06 49.9 7.8 25 210-234 25-49 (200)
421 COG0714 MoxR-like ATPases [Gen 93.7 0.12 2.6E-06 56.4 6.3 64 185-261 25-88 (329)
422 PRK07276 DNA polymerase III su 93.6 2.6 5.6E-05 44.6 15.7 70 289-359 102-173 (290)
423 PRK11388 DNA-binding transcrip 93.6 0.18 4E-06 60.6 8.3 130 185-330 326-466 (638)
424 PTZ00185 ATPase alpha subunit; 93.6 0.3 6.6E-06 54.7 9.1 93 210-302 188-300 (574)
425 PRK00131 aroK shikimate kinase 93.5 0.053 1.2E-06 53.1 3.0 24 211-234 4-27 (175)
426 cd01136 ATPase_flagellum-secre 93.5 0.25 5.4E-06 52.9 8.2 87 211-301 69-169 (326)
427 cd00227 CPT Chloramphenicol (C 93.5 0.055 1.2E-06 53.0 2.9 23 212-234 3-25 (175)
428 TIGR03263 guanyl_kin guanylate 93.5 0.056 1.2E-06 53.3 3.0 23 212-234 2-24 (180)
429 PRK06995 flhF flagellar biosyn 93.5 0.28 6.1E-06 55.5 8.7 24 211-234 256-279 (484)
430 cd03243 ABC_MutS_homologs The 93.5 0.064 1.4E-06 54.0 3.5 22 212-233 30-51 (202)
431 COG2019 AdkA Archaeal adenylat 93.4 0.069 1.5E-06 49.8 3.2 23 211-233 4-26 (189)
432 TIGR00708 cobA cob(I)alamin ad 93.4 0.32 6.9E-06 46.7 7.9 118 211-331 5-140 (173)
433 KOG0736 Peroxisome assembly fa 93.4 1.8 4E-05 50.4 14.9 98 184-302 672-775 (953)
434 cd02021 GntK Gluconate kinase 93.4 0.05 1.1E-06 51.8 2.5 22 213-234 1-22 (150)
435 PF03969 AFG1_ATPase: AFG1-lik 93.4 0.15 3.2E-06 55.9 6.4 78 209-305 60-141 (362)
436 COG3640 CooC CO dehydrogenase 93.4 0.12 2.5E-06 51.3 4.8 43 213-257 2-45 (255)
437 PRK08927 fliI flagellum-specif 93.4 0.19 4.1E-06 56.0 7.1 88 210-301 157-258 (442)
438 TIGR03878 thermo_KaiC_2 KaiC d 93.4 0.2 4.4E-06 52.5 7.1 41 210-252 35-75 (259)
439 PRK13765 ATP-dependent proteas 93.4 0.12 2.6E-06 60.8 5.9 75 184-268 31-105 (637)
440 PRK06217 hypothetical protein; 93.3 0.054 1.2E-06 53.5 2.7 23 213-235 3-25 (183)
441 TIGR03498 FliI_clade3 flagella 93.3 0.18 4E-06 56.0 7.0 89 210-301 139-240 (418)
442 cd00267 ABC_ATPase ABC (ATP-bi 93.3 0.2 4.3E-06 48.1 6.5 116 212-336 26-145 (157)
443 COG1124 DppF ABC-type dipeptid 93.3 0.063 1.4E-06 53.6 3.0 24 210-233 32-55 (252)
444 PRK06793 fliI flagellum-specif 93.3 0.34 7.3E-06 54.0 9.0 90 210-302 155-257 (432)
445 PRK08149 ATP synthase SpaL; Va 93.3 0.24 5.2E-06 55.1 7.7 88 210-301 150-251 (428)
446 PRK09280 F0F1 ATP synthase sub 93.3 0.22 4.7E-06 55.8 7.4 90 210-300 143-247 (463)
447 PRK05922 type III secretion sy 93.3 0.32 7E-06 54.1 8.7 87 211-301 157-257 (434)
448 TIGR03881 KaiC_arch_4 KaiC dom 93.3 0.28 6.1E-06 50.5 7.9 41 210-252 19-59 (229)
449 TIGR02915 PEP_resp_reg putativ 93.3 0.52 1.1E-05 54.1 11.0 134 185-331 140-284 (445)
450 PF13504 LRR_7: Leucine rich r 93.2 0.064 1.4E-06 29.6 1.7 17 926-943 1-17 (17)
451 cd00820 PEPCK_HprK Phosphoenol 93.2 0.085 1.8E-06 46.1 3.3 22 211-232 15-36 (107)
452 PRK10463 hydrogenase nickel in 93.2 0.36 7.7E-06 50.6 8.4 88 209-302 102-195 (290)
453 PRK03846 adenylylsulfate kinas 93.2 0.078 1.7E-06 53.2 3.5 25 209-233 22-46 (198)
454 COG1126 GlnQ ABC-type polar am 93.2 0.11 2.3E-06 50.9 4.2 37 210-249 27-63 (240)
455 cd01132 F1_ATPase_alpha F1 ATP 93.2 0.2 4.3E-06 52.0 6.4 86 210-301 68-171 (274)
456 PF08477 Miro: Miro-like prote 93.2 0.071 1.5E-06 48.3 2.9 22 214-235 2-23 (119)
457 PF01078 Mg_chelatase: Magnesi 93.1 0.14 3E-06 50.5 5.0 42 184-233 3-44 (206)
458 TIGR01313 therm_gnt_kin carboh 93.1 0.33 7.2E-06 46.8 7.8 21 214-234 1-21 (163)
459 PRK14737 gmk guanylate kinase; 93.1 0.082 1.8E-06 52.2 3.5 25 210-234 3-27 (186)
460 PRK00300 gmk guanylate kinase; 93.1 0.071 1.5E-06 53.9 3.1 25 210-234 4-28 (205)
461 KOG0743 AAA+-type ATPase [Post 93.1 1.3 2.8E-05 48.6 12.6 71 323-400 339-415 (457)
462 TIGR03522 GldA_ABC_ATP gliding 93.1 0.53 1.2E-05 50.6 10.0 25 210-234 27-51 (301)
463 smart00534 MUTSac ATPase domai 93.1 0.62 1.3E-05 46.0 9.7 21 213-233 1-21 (185)
464 cd02020 CMPK Cytidine monophos 93.1 0.062 1.3E-06 50.8 2.5 22 213-234 1-22 (147)
465 PRK06936 type III secretion sy 93.1 0.28 6E-06 54.6 7.8 88 210-301 161-262 (439)
466 KOG0729 26S proteasome regulat 93.1 0.4 8.8E-06 48.0 8.0 56 184-241 177-239 (435)
467 TIGR00764 lon_rel lon-related 93.1 0.18 4E-06 59.4 6.9 74 184-268 18-92 (608)
468 PRK08533 flagellar accessory p 93.0 0.38 8.2E-06 49.4 8.4 49 210-262 23-71 (230)
469 PRK04328 hypothetical protein; 93.0 0.23 4.9E-06 51.8 6.8 41 210-252 22-62 (249)
470 PRK13949 shikimate kinase; Pro 93.0 0.067 1.4E-06 51.9 2.7 22 213-234 3-24 (169)
471 PRK10078 ribose 1,5-bisphospho 93.0 0.074 1.6E-06 52.7 3.0 23 212-234 3-25 (186)
472 KOG3864 Uncharacterized conser 93.0 0.0087 1.9E-07 57.5 -3.4 96 790-895 92-188 (221)
473 PRK10875 recD exonuclease V su 93.0 0.42 9.2E-06 56.2 9.6 117 212-331 168-302 (615)
474 PRK13947 shikimate kinase; Pro 93.0 0.066 1.4E-06 52.2 2.6 21 213-233 3-23 (171)
475 TIGR03305 alt_F1F0_F1_bet alte 92.9 0.19 4.2E-06 56.0 6.4 91 210-301 137-242 (449)
476 COG1936 Predicted nucleotide k 92.9 0.075 1.6E-06 50.1 2.7 20 213-232 2-21 (180)
477 cd00071 GMPK Guanosine monopho 92.9 0.068 1.5E-06 49.8 2.5 22 213-234 1-22 (137)
478 PRK12678 transcription termina 92.9 0.14 3.1E-06 57.9 5.2 100 195-300 405-512 (672)
479 PRK06731 flhF flagellar biosyn 92.9 0.53 1.1E-05 49.2 9.2 90 211-303 75-166 (270)
480 PF13481 AAA_25: AAA domain; P 92.9 0.19 4.2E-06 50.1 5.9 41 212-252 33-81 (193)
481 TIGR02329 propionate_PrpR prop 92.8 0.22 4.8E-06 57.5 7.0 47 184-234 212-258 (526)
482 COG0194 Gmk Guanylate kinase [ 92.8 0.093 2E-06 50.2 3.2 25 211-235 4-28 (191)
483 PF03266 NTPase_1: NTPase; In 92.8 0.073 1.6E-06 51.4 2.6 21 214-234 2-22 (168)
484 cd00984 DnaB_C DnaB helicase C 92.8 0.55 1.2E-05 48.8 9.5 54 210-266 12-65 (242)
485 PRK05986 cob(I)alamin adenolsy 92.8 0.3 6.5E-06 47.7 6.7 119 211-331 22-158 (191)
486 PRK11823 DNA repair protein Ra 92.8 0.32 7E-06 55.2 8.1 41 210-252 79-119 (446)
487 PF13245 AAA_19: Part of AAA d 92.8 0.15 3.3E-06 41.7 4.0 22 212-233 11-33 (76)
488 PF13504 LRR_7: Leucine rich r 92.8 0.07 1.5E-06 29.4 1.4 10 618-627 3-12 (17)
489 TIGR00416 sms DNA repair prote 92.7 0.39 8.4E-06 54.6 8.6 42 209-252 92-133 (454)
490 PRK14530 adenylate kinase; Pro 92.7 0.076 1.7E-06 54.0 2.8 23 212-234 4-26 (215)
491 COG0529 CysC Adenylylsulfate k 92.7 0.11 2.3E-06 49.1 3.4 25 209-233 21-45 (197)
492 PRK09099 type III secretion sy 92.7 0.28 6.1E-06 54.8 7.2 89 210-301 162-263 (441)
493 PRK12339 2-phosphoglycerate ki 92.7 0.096 2.1E-06 52.1 3.3 24 211-234 3-26 (197)
494 KOG2170 ATPase of the AAA+ sup 92.7 0.25 5.4E-06 50.8 6.1 51 184-234 82-133 (344)
495 COG1419 FlhF Flagellar GTP-bin 92.7 0.38 8.3E-06 52.2 7.9 89 210-302 202-292 (407)
496 cd03280 ABC_MutS2 MutS2 homolo 92.6 0.17 3.6E-06 50.9 5.0 21 212-232 29-49 (200)
497 PRK15424 propionate catabolism 92.6 0.26 5.6E-06 56.9 7.1 47 184-234 219-265 (538)
498 COG1643 HrpA HrpA-like helicas 92.6 0.72 1.6E-05 55.7 10.9 146 190-345 52-222 (845)
499 PRK14738 gmk guanylate kinase; 92.6 0.12 2.5E-06 52.2 3.8 26 209-234 11-36 (206)
500 PRK14527 adenylate kinase; Pro 92.6 0.096 2.1E-06 52.2 3.2 25 210-234 5-29 (191)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-90 Score=818.65 Aligned_cols=817 Identities=29% Similarity=0.418 Sum_probs=601.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhHHhhhhhhhHHhh
Q 043855 9 LTASVDLLLNKLASDEIRSFARQEQIQADLMKWEEMLVMSKAVLDDAEEKKKTDNSVKLWLGELQSLVYDVEDLLDEFQT 88 (946)
Q Consensus 9 ~s~~v~~l~~~l~s~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lrd~ayd~ed~lD~~~~ 88 (946)
++..++++.+.+ ..++....++++.+..|++.|..++++++||+.++.....+..|.+.++|++|++||.++.|..
T Consensus 5 ~s~~~~~~~~~l----~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 5 VSFGVEKLDQLL----NRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred EEEehhhHHHHH----HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433 3345556678889999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCCCCCCcccccccccccccccccCCCcchhhHHHHHHHHHHHHHHHHHHHhhccccCCCcCc--
Q 043855 89 EAFRRELLLANGEPAATHDHPSSCRTSKFRKLIPTCCTAFTPQSIQFDYAMMSKIKEINKRFQDILLLKDLMDSNTRR-- 166 (946)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~-- 166 (946)
.....+..+. .. ......+.... ..+.+..+..+..+.+|+..+......++.....
T Consensus 81 ~~~~~~~~~~---l~---------~~~~~~~~~c~---------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~ 139 (889)
T KOG4658|consen 81 EEIERKANDL---LS---------TRSVERQRLCL---------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEV 139 (889)
T ss_pred HHHHHHHhHH---hh---------hhHHHHHHHhh---------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceec
Confidence 8876543311 00 00001111110 1345666777777777777777777666654321
Q ss_pred -c--cccccccccccccccccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc-ccccCC
Q 043855 167 -T--TIDRQRLEETCSLVNEAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDR-VRDHFD 242 (946)
Q Consensus 167 -~--~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~ 242 (946)
+ ....... ++.+..++.+ ||.+..++++++.|.+++ ..+++|+||||+||||||++++|+.. ++.+|+
T Consensus 140 ~~~~~~~~~~~-e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd 211 (889)
T KOG4658|consen 140 VGESLDPREKV-ETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFD 211 (889)
T ss_pred ccccccchhhc-ccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCc
Confidence 1 1111122 2556666666 999999999999998764 28999999999999999999999987 999999
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCC
Q 043855 243 LKAWTCVSDDFDVVRLIKVILRSFVADPNV-DNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPG 321 (946)
Q Consensus 243 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~g 321 (946)
.++||+||+.|+..+++.+|++.++..... .....++++..+.+.|++|||||||||||+.. +|+.+..++|...+|
T Consensus 212 ~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~I~~~~p~~~~g 289 (889)
T KOG4658|consen 212 GVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDKIGVPFPSRENG 289 (889)
T ss_pred eEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHhcCCCCCCccCC
Confidence 999999999999999999999999875442 22334788999999999999999999999974 799999999999999
Q ss_pred cEEEEEcCChhHHHh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhcc
Q 043855 322 SKIIVTTRNQGVAAI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRG 400 (946)
Q Consensus 322 s~iivTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~ 400 (946)
|+|++|||+++|+.. +++...++++.|+++|||+||.+.||.... ..++.++++|++|+++|+|+|||++++|+.|+.
T Consensus 290 ~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~ 368 (889)
T KOG4658|consen 290 SKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLAC 368 (889)
T ss_pred eEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcC
Confidence 999999999999998 778889999999999999999999987643 344559999999999999999999999999999
Q ss_pred CCChHHHHHHHhhhcccCc----ccccccchhhhhhccCCChhHHHHhhhhccCCCCCcccHHHHHHHHHHhCCccccCC
Q 043855 401 HHDKCDWEGVLRAKIWELP----EERASFIPDLAISYRHLPPTLKQCFAYCSLFPKGYEFEEKEIILLWSAVGFLDHVQS 476 (946)
Q Consensus 401 ~~~~~~w~~~~~~~~~~~~----~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~ 476 (946)
|.+.++|+++.+...+... ...+.++++|++||+.||+++|.||+|||+||+||.|+++.|+.+|||||||.+.+.
T Consensus 369 K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~ 448 (889)
T KOG4658|consen 369 KKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDG 448 (889)
T ss_pred CCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCcccc
Confidence 9999999999987766532 234678999999999999999999999999999999999999999999999998777
Q ss_pred CCcHHHHHHHHHHHHHhCcCCcccCC--CCCceEechhHHHHHHHhcc-----cceEEeccc------cccccccceeEE
Q 043855 477 GNASEDLGRDIFRELCARSFFQESGE--DTSGFVMHDLVNGLAQWAGG-----QIYFRMEDN------RQQRFSQNLCHF 543 (946)
Q Consensus 477 ~~~~e~~~~~~l~~L~~~~l~~~~~~--~~~~~~~Hdlv~~~a~~~~~-----~~~~~~~~~------~~~~~~~~~r~l 543 (946)
+.+.+++|+.|+.+|++++|++.... ....|+|||+|||+|.++++ .++..+.++ ........+|++
T Consensus 449 ~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~ 528 (889)
T KOG4658|consen 449 GETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRM 528 (889)
T ss_pred ccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEE
Confidence 89999999999999999999998762 55789999999999999999 555444432 112233578999
Q ss_pred EEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhhhhhc-ccCceeEEEecCC-CCccCCccccCCCCCcEE
Q 043855 544 SFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLL-RLQRLRVFSLCGY-EIFELPDSIGELRHLRYL 621 (946)
Q Consensus 544 s~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~-~~~~Lr~L~L~~~-~~~~lp~~i~~l~~Lr~L 621 (946)
+++.+... ....-.++++|+||.+..+.. ........++ .++.||+|||++| .+..+|..|++|.|||||
T Consensus 529 s~~~~~~~---~~~~~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 529 SLMNNKIE---HIAGSSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred EEeccchh---hccCCCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 99876432 223334666899999988641 0123344444 7999999999988 678999999999999999
Q ss_pred eccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCceecCCCC
Q 043855 622 NLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDS 701 (946)
Q Consensus 622 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~ 701 (946)
+|+++.|+.+|.++++|..|++||+..+..+..+|..+..|++||+|.+.... ...-...++.+.+|++|..+.+...+
T Consensus 601 ~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecch
Confidence 99999999999999999999999999998777777777789999999987654 11111235556666666555543333
Q ss_pred CCChhccccccccC---CeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCC---CC
Q 043855 702 GSGLRELKLLKHLH---GTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLK---PH 775 (946)
Q Consensus 702 ~~~~~~L~~L~~L~---~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~---~~ 775 (946)
...+..+..+..|+ ..+.+.. .........+..+.+|+.|.+..|...+... ....... .+
T Consensus 680 ~~~~e~l~~~~~L~~~~~~l~~~~-----~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~--------~~~~~~~~~~~f 746 (889)
T KOG4658|consen 680 VLLLEDLLGMTRLRSLLQSLSIEG-----CSKRTLISSLGSLGNLEELSILDCGISEIVI--------EWEESLIVLLCF 746 (889)
T ss_pred hHhHhhhhhhHHHHHHhHhhhhcc-----cccceeecccccccCcceEEEEcCCCchhhc--------ccccccchhhhH
Confidence 32223333333333 1122111 1223344566777888888888765543110 0000000 13
Q ss_pred CCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCC-CCCCCCCCCCceeeeccccCceeeCccccCCCCCCcCC
Q 043855 776 KNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTS-LPSVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFL 854 (946)
Q Consensus 776 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 854 (946)
+++..+.+.++.....+.|.. -.++|+.|.+..|...+. +|....+..++.+.+. |.
T Consensus 747 ~~l~~~~~~~~~~~r~l~~~~--f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~--------------------f~ 804 (889)
T KOG4658|consen 747 PNLSKVSILNCHMLRDLTWLL--FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILP--------------------FN 804 (889)
T ss_pred HHHHHHHhhccccccccchhh--ccCcccEEEEecccccccCCCHHHHhhhcccEEec--------------------cc
Confidence 356666666666666777764 457888888888877654 3444444444442222 44
Q ss_pred Cccee-eccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCCCCCCCCCEEEEccc
Q 043855 855 CLETL-CFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLPERLPELKMFVIQSC 915 (946)
Q Consensus 855 ~L~~L-~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~~l~~L~~L~i~~c 915 (946)
++..+ .+.+.+.+..+. .. .-.+++|+.+.+..||++. . +|.+.++.+.+|
T Consensus 805 ~~~~l~~~~~l~~l~~i~-~~----~l~~~~l~~~~ve~~p~l~-~----~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 805 KLEGLRMLCSLGGLPQLY-WL----PLSFLKLEELIVEECPKLG-K----LPLLSTLTIVGC 856 (889)
T ss_pred ccccceeeecCCCCceeE-ec----ccCccchhheehhcCcccc-c----Cccccccceecc
Confidence 44444 344444444332 11 1345557777777777666 3 344555666555
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-64 Score=633.18 Aligned_cols=480 Identities=21% Similarity=0.266 Sum_probs=346.1
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEe---CCC------
Q 043855 182 NEAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCV---SDD------ 252 (946)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~---~~~------ 252 (946)
+..++|||++.++++..+|... .+++++|+||||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccc
Confidence 3457999999999999988543 24689999999999999999999999 67888988887742 111
Q ss_pred -----CC-HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEE
Q 043855 253 -----FD-VVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIV 326 (946)
Q Consensus 253 -----~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iiv 326 (946)
++ ...++.+++.++........... ..+++.++++|+||||||||+. ..|+.+.......++||+|||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEE
Confidence 11 22345556666544332121122 3467778999999999999875 578888766666678999999
Q ss_pred EcCChhHHHhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhccCCChHH
Q 043855 327 TTRNQGVAAIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRGHHDKCD 406 (946)
Q Consensus 327 TtR~~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~ 406 (946)
|||+..++..++...+|+++.|++++||+||+++||+... +++.+++++++|+++|+|+|||++++|+.|+++ +..+
T Consensus 330 TTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~ 406 (1153)
T PLN03210 330 ITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKED 406 (1153)
T ss_pred EeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHH
Confidence 9999999988777789999999999999999999997643 355788999999999999999999999999986 6789
Q ss_pred HHHHHhhhcccCcccccccchhhhhhccCCCh-hHHHHhhhhccCCCCCcccHHHHHHHHHHhCCccccCCCCcHHHHHH
Q 043855 407 WEGVLRAKIWELPEERASFIPDLAISYRHLPP-TLKQCFAYCSLFPKGYEFEEKEIILLWSAVGFLDHVQSGNASEDLGR 485 (946)
Q Consensus 407 w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~ 485 (946)
|+.++....... ...+.++|++||+.|++ ..|.||+++|+||.+..++. +..|+|.+.... +
T Consensus 407 W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~~-----------~ 469 (1153)
T PLN03210 407 WMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND---IKLLLANSDLDV-----------N 469 (1153)
T ss_pred HHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH---HHHHHHhcCCCc-----------h
Confidence 999998765433 23689999999999987 59999999999999986654 677888775532 1
Q ss_pred HHHHHHHhCcCCcccCCCCCceEechhHHHHHHHhcccce-------EEecccc------ccccccceeEEEEEeccCCC
Q 043855 486 DIFRELCARSFFQESGEDTSGFVMHDLVNGLAQWAGGQIY-------FRMEDNR------QQRFSQNLCHFSFIRGDYDG 552 (946)
Q Consensus 486 ~~l~~L~~~~l~~~~~~~~~~~~~Hdlv~~~a~~~~~~~~-------~~~~~~~------~~~~~~~~r~ls~~~~~~~~ 552 (946)
.-++.|+++||++... ..+.|||++|++|+.++.++. +...... ...-...++++++.......
T Consensus 470 ~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~ 546 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDE 546 (1153)
T ss_pred hChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccce
Confidence 2388999999998753 569999999999999986542 1111100 01123456666654322111
Q ss_pred -CcccccccccccceeeccCCCCCCCccchhHHhhhhhccc-CceeEEEecCCCCccCCccccCCCCCcEEeccCCCccc
Q 043855 553 -GKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRL-QRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEV 630 (946)
Q Consensus 553 -~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~-~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~ 630 (946)
.-....+.++++|+.|.+..............++..+..+ ..||.|.+.++.+..+|..+ .+.+|++|++++|.+..
T Consensus 547 ~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 547 LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccc
Confidence 0112235677888888775432000000112233344433 35777777777777777666 46777777777777777
Q ss_pred cccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCceecC
Q 043855 631 LPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVG 698 (946)
Q Consensus 631 lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 698 (946)
+|..+..+++|++|+|++|..++.+|. +..+++|++|++++|..+..+|..++++++|+.|.+..+.
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 777777777777777777766666664 6677777777777776677777777777777777665443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5.3e-44 Score=384.92 Aligned_cols=278 Identities=38% Similarity=0.639 Sum_probs=226.5
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 043855 189 REIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVA 268 (946)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 268 (946)
||.++++|.++|.... .+.++|+|+||||+||||||++++++..++.+|+.++||.++...+...++..|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998753 478999999999999999999999977799999999999999999999999999999987
Q ss_pred CCCC--CcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhHHHhhCC-CCcEeC
Q 043855 269 DPNV--DNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGVAAIMGT-VPAYQL 345 (946)
Q Consensus 269 ~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l 345 (946)
.... ...+.......+++.|+++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7432 4567778999999999999999999999876 4888888888777789999999999998876654 678999
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhccCCChHHHHHHHhhhcccCcc---cc
Q 043855 346 KKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRGHHDKCDWEGVLRAKIWELPE---ER 422 (946)
Q Consensus 346 ~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~---~~ 422 (946)
++|+++|+++||.+.++... ....+.+++++++|+++|+|+||||+++|++|+.+.+..+|..++++..+.... ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999988654 123345567899999999999999999999997766778899998775554322 23
Q ss_pred cccchhhhhhccCCChhHHHHhhhhccCCCCCcccHHHHHHHHHHhCCccc
Q 043855 423 ASFIPDLAISYRHLPPTLKQCFAYCSLFPKGYEFEEKEIILLWSAVGFLDH 473 (946)
Q Consensus 423 ~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~ 473 (946)
..+..++.+||+.||+++|+||+|||+||+++.|+++.|+++|+|||||.+
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 568899999999999999999999999999999999999999999999976
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=1.3e-25 Score=283.21 Aligned_cols=328 Identities=18% Similarity=0.213 Sum_probs=165.1
Q ss_pred cCceeEEEecCCCCc-cCCccccCCCCCcEEeccCCCcc-ccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeee
Q 043855 592 LQRLRVFSLCGYEIF-ELPDSIGELRHLRYLNLSRTLIE-VLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLN 669 (946)
Q Consensus 592 ~~~Lr~L~L~~~~~~-~lp~~i~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 669 (946)
+++|++|+|++|.+. .+|..++++.+|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 444555555555443 34555555555555555555543 4455555555555555555544444555555555555555
Q ss_pred cCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEE
Q 043855 670 NSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLR 749 (946)
Q Consensus 670 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 749 (946)
+++|.....+|..++++++|++|++..+... +.....+.++++|+ .|.+.... .....+..+.++++|+.|+++
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~l~~l~~L~~L~Ls 292 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT-GPIPSSLGNLKNLQ-YLFLYQNK----LSGPIPPSIFSLQKLISLDLS 292 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceec-cccChhHhCCCCCC-EEECcCCe----eeccCchhHhhccCcCEEECc
Confidence 5555533445555555555555554433221 11122333344443 34433221 112233344555666666666
Q ss_pred ecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCC-CCCcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCc
Q 043855 750 WTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGT-EFPTWLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLK 827 (946)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~ 827 (946)
+|.... ..+..+..+++|+.|++++|.+. ..|.++. .+++|+.|++++|.+.+.+| .++.+++|+
T Consensus 293 ~n~l~~-----------~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 359 (968)
T PLN00113 293 DNSLSG-----------EIPELVIQLQNLEILHLFSNNFTGKIPVALT--SLPRLQVLQLWSNKFSGEIPKNLGKHNNLT 359 (968)
T ss_pred CCeecc-----------CCChhHcCCCCCcEEECCCCccCCcCChhHh--cCCCCCEEECcCCCCcCcCChHHhCCCCCc
Confidence 554332 23344555667777777776644 4555554 56777777777777665555 466677777
Q ss_pred eeeeccccCceeeCccccCC------------------CCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEee
Q 043855 828 HLVVRRMSRVKRLGSEFYGN------------------DCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFR 889 (946)
Q Consensus 828 ~L~L~~~~~l~~~~~~~~~~------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~ 889 (946)
.|++++|.....++..+... .....+++|+.|++.++.-.... +.....+++|+.|+
T Consensus 360 ~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~ 434 (968)
T PLN00113 360 VLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL-----PSEFTKLPLVYFLD 434 (968)
T ss_pred EEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC-----ChhHhcCCCCCEEE
Confidence 77777664433333332110 00112344444444443211111 11123455666666
Q ss_pred ecCCcCccccCCC---CCCCCCEEEEccccccc--ccCCCCCCccEEEEcCCCCCCCCCC
Q 043855 890 ILRCPKLQGTLPE---RLPELKMFVIQSCEELL--VSVTSLPTLCRFKIGGCKNVPDFFH 944 (946)
Q Consensus 890 l~~c~~L~~~lp~---~l~~L~~L~i~~c~~l~--~~l~~l~~L~~L~l~~c~~l~~lp~ 944 (946)
+++| .+++.+|. .+++|+.|++++|.... ......++|+.|++++|.....+|.
T Consensus 435 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~ 493 (968)
T PLN00113 435 ISNN-NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR 493 (968)
T ss_pred CcCC-cccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccCh
Confidence 6665 44444442 45666666666654321 1112345677777777654445543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=5.1e-25 Score=277.76 Aligned_cols=330 Identities=20% Similarity=0.210 Sum_probs=155.6
Q ss_pred hhhhcccCceeEEEecCCCCc-cCCccccCCCCCcEEeccCCCcc-ccccchhcCCCCcEEecCCCCchhhchhhhcccC
Q 043855 586 LHQLLRLQRLRVFSLCGYEIF-ELPDSIGELRHLRYLNLSRTLIE-VLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLI 663 (946)
Q Consensus 586 ~~~l~~~~~Lr~L~L~~~~~~-~lp~~i~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 663 (946)
+..+.++++|++|+|++|.+. .+|..++++.+|++|+|++|.+. .+|..++++++|++|++++|.....+|..+++++
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 260 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence 333444444555555444443 24444444445555555444443 3444444445555555544433334444444444
Q ss_pred ccCeeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCccccc
Q 043855 664 NLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNL 743 (946)
Q Consensus 664 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L 743 (946)
+|++|++++|...+.+|..++.+++|++|++..+... +.....+.++++|+ .|.+.... .....+..+..+++|
T Consensus 261 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~-~L~l~~n~----~~~~~~~~~~~l~~L 334 (968)
T PLN00113 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-GEIPELVIQLQNLE-ILHLFSNN----FTGKIPVALTSLPRL 334 (968)
T ss_pred CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-cCCChhHcCCCCCc-EEECCCCc----cCCcCChhHhcCCCC
Confidence 4555544444422334444444444444443322111 11111122223332 33322211 111222334444555
Q ss_pred CceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCC-CCCcCcCC----------------------CCC
Q 043855 744 KVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGT-EFPTWLGD----------------------FSF 800 (946)
Q Consensus 744 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~----------------------~~l 800 (946)
+.|++++|.... ..+..+..+++|+.|++++|.+. .+|.++.. ..+
T Consensus 335 ~~L~L~~n~l~~-----------~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 335 QVLQLWSNKFSG-----------EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred CEEECcCCCCcC-----------cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 555555443322 12223333444444444444432 23333320 034
Q ss_pred CCccEEEEecCCCCCCCC-CCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCC
Q 043855 801 SNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGI 879 (946)
Q Consensus 801 ~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 879 (946)
++|+.|++++|.+.+.+| .+..+++|+.|++++|.....++..+ ..+++|+.|+++++.-..... . .
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~L~~n~~~~~~p-~-----~ 471 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK------WDMPSLQMLSLARNKFFGGLP-D-----S 471 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh------ccCCCCcEEECcCceeeeecC-c-----c
Confidence 445555555544443333 24445555555555443222222111 125667777776654322221 0 1
Q ss_pred CCCCcccEeeecCCcCccccCCC---CCCCCCEEEEccccc---ccccCCCCCCccEEEEcCCCCCCCCCCC
Q 043855 880 ELFPNLREFRILRCPKLQGTLPE---RLPELKMFVIQSCEE---LLVSVTSLPTLCRFKIGGCKNVPDFFHS 945 (946)
Q Consensus 880 ~~~p~L~~L~l~~c~~L~~~lp~---~l~~L~~L~i~~c~~---l~~~l~~l~~L~~L~l~~c~~l~~lp~~ 945 (946)
...++|+.|++++| ++.+.+|. .+++|+.|++++|.. ++..+.++++|++|+|++|.....+|.+
T Consensus 472 ~~~~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 472 FGSKRLENLDLSRN-QFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred cccccceEEECcCC-ccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence 23467888888888 56656663 467888888888753 3556778899999999999666666653
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=9.4e-25 Score=232.39 Aligned_cols=318 Identities=22% Similarity=0.260 Sum_probs=237.7
Q ss_pred cceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCCC
Q 043855 538 QNLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRH 617 (946)
Q Consensus 538 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~ 617 (946)
.+..|+++..+... .....+..+++||++.+..+. .....+|+.+|++.-|.+||||.|.+.+.|..+..-++
T Consensus 55 qkLEHLs~~HN~L~--~vhGELs~Lp~LRsv~~R~N~-----LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn 127 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLI--SVHGELSDLPRLRSVIVRDNN-----LKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKN 127 (1255)
T ss_pred hhhhhhhhhhhhhH--hhhhhhccchhhHHHhhhccc-----cccCCCCchhcccccceeeecchhhhhhcchhhhhhcC
Confidence 34567776554321 223467789999999987764 13356789999999999999999999999999999999
Q ss_pred CcEEeccCCCccccccc-hhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccc-cccCCCCCCcccCce
Q 043855 618 LRYLNLSRTLIEVLPES-VNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMP-IGIGKLTSLQTLCSF 695 (946)
Q Consensus 618 Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~ 695 (946)
+-+|+||+|+|..+|.+ +-+|..|-+||||+| .+..+|+.+..|.+|++|.+++|+ +..+. ..+..|++|++|+..
T Consensus 128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred cEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcc
Confidence 99999999999999987 558999999999998 899999999999999999999997 43322 234567778888776
Q ss_pred ecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCC
Q 043855 696 VVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPH 775 (946)
Q Consensus 696 ~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~ 775 (946)
+.+.........+..|.+|+ .++++.. .....++.+-++.+|+.|+|+.|.+.. .-.....-
T Consensus 206 ~TqRTl~N~Ptsld~l~NL~-dvDlS~N-----~Lp~vPecly~l~~LrrLNLS~N~ite------------L~~~~~~W 267 (1255)
T KOG0444|consen 206 NTQRTLDNIPTSLDDLHNLR-DVDLSEN-----NLPIVPECLYKLRNLRRLNLSGNKITE------------LNMTEGEW 267 (1255)
T ss_pred cccchhhcCCCchhhhhhhh-hcccccc-----CCCcchHHHhhhhhhheeccCcCceee------------eeccHHHH
Confidence 66554433334444444444 3333211 122345667788999999999886654 11112224
Q ss_pred CCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCC-CCCC-CCCCCCCCceeeeccccCceeeCccccCCCCCCcC
Q 043855 776 KNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMC-TSLP-SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPF 853 (946)
Q Consensus 776 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~-~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 853 (946)
.+|++|+++.|.++.+|+.+. .+++|+.|.+.+|.+. +.+| .+|+|.+|+.+...+ +.++-+|..++. |
T Consensus 268 ~~lEtLNlSrNQLt~LP~avc--KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcR------C 338 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTVLPDAVC--KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCR------C 338 (1255)
T ss_pred hhhhhhccccchhccchHHHh--hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhh------h
Confidence 589999999999999999887 7899999999998874 6777 499999999999986 467777776644 7
Q ss_pred CCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCcc
Q 043855 854 LCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQ 897 (946)
Q Consensus 854 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~ 897 (946)
+.|+.|.++...-+ ..+..+..+|.|+.|+++.+|+|.
T Consensus 339 ~kL~kL~L~~NrLi------TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 339 VKLQKLKLDHNRLI------TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred HHHHHhccccccee------echhhhhhcCCcceeeccCCcCcc
Confidence 88888888764321 112235678899999999999886
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.4e-23 Score=223.65 Aligned_cols=318 Identities=26% Similarity=0.280 Sum_probs=228.3
Q ss_pred ccccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCc--cCCccccCCCCCcEEeccCCCccccccc
Q 043855 557 ENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIF--ELPDSIGELRHLRYLNLSRTLIEVLPES 634 (946)
Q Consensus 557 ~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~--~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~ 634 (946)
+.+..+.+|..|.+..+. ...+...+..++.||.+++..|++. .+|..|.+|..|..||||+|++++.|..
T Consensus 49 eEL~~lqkLEHLs~~HN~-------L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~ 121 (1255)
T KOG0444|consen 49 EELSRLQKLEHLSMAHNQ-------LISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN 121 (1255)
T ss_pred HHHHHHhhhhhhhhhhhh-------hHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh
Confidence 345556666666655443 1233445668999999999999886 5899999999999999999999999999
Q ss_pred hhcCCCCcEEecCCCCchhhchhh-hcccCccCeeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccc
Q 043855 635 VNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKH 713 (946)
Q Consensus 635 i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~ 713 (946)
+.+-+|+-+|+||+| .+..+|.. +-+|+.|-+||+++|+ +..+|+.+..|.+||+|.+.++.. ...-+..|++++.
T Consensus 122 LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL-~hfQLrQLPsmts 198 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPL-NHFQLRQLPSMTS 198 (1255)
T ss_pred hhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChh-hHHHHhcCccchh
Confidence 999999999999998 89999976 5689999999999998 999999999999999998765432 1223444555554
Q ss_pred cCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCc
Q 043855 714 LHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPT 793 (946)
Q Consensus 714 L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 793 (946)
|. .|.+ .+.......++.++..+.+|..++++.|.... +++.+-..++|+.|+|++|.++++.-
T Consensus 199 L~-vLhm---s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~------------vPecly~l~~LrrLNLS~N~iteL~~ 262 (1255)
T KOG0444|consen 199 LS-VLHM---SNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI------------VPECLYKLRNLRRLNLSGNKITELNM 262 (1255)
T ss_pred hh-hhhc---ccccchhhcCCCchhhhhhhhhccccccCCCc------------chHHHhhhhhhheeccCcCceeeeec
Confidence 44 3433 33333555677778888888888888875543 56666777888888888888877765
Q ss_pred CcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceeeeccccCceee--CccccCCCCCCcCCCcceeeccCCcccccc
Q 043855 794 WLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMSRVKRL--GSEFYGNDCPIPFLCLETLCFEDMREWEDW 870 (946)
Q Consensus 794 ~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 870 (946)
... .-.+|++|+|+.|.+ ..+| .+++|+.|+.|.+.+| ++..- |.. .+.+.+|+.+...+. .++-.
T Consensus 263 ~~~--~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~N-kL~FeGiPSG------IGKL~~Levf~aanN-~LElV 331 (1255)
T KOG0444|consen 263 TEG--EWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNN-KLTFEGIPSG------IGKLIQLEVFHAANN-KLELV 331 (1255)
T ss_pred cHH--HHhhhhhhccccchh-ccchHHHhhhHHHHHHHhccC-cccccCCccc------hhhhhhhHHHHhhcc-ccccC
Confidence 443 346788888888874 4555 5888888888888764 33322 221 233556666666542 12211
Q ss_pred cccCCCCCCCCCCcccEeeecCCcCccccCCC---CCCCCCEEEEcccccc
Q 043855 871 IPCGSSQGIELFPNLREFRILRCPKLQGTLPE---RLPELKMFVIQSCEEL 918 (946)
Q Consensus 871 ~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~---~l~~L~~L~i~~c~~l 918 (946)
++++..|++|+.|.++.+ .|. .+|+ .++.|+.|++.+++++
T Consensus 332 -----PEglcRC~kL~kL~L~~N-rLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 332 -----PEGLCRCVKLQKLKLDHN-RLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred -----chhhhhhHHHHHhccccc-cee-echhhhhhcCCcceeeccCCcCc
Confidence 122456788888888877 555 5774 4678888888888777
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.7e-20 Score=236.20 Aligned_cols=314 Identities=19% Similarity=0.317 Sum_probs=228.7
Q ss_pred hcccCceeEEEecCCCC-------ccCCccccCCC-CCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhc
Q 043855 589 LLRLQRLRVFSLCGYEI-------FELPDSIGELR-HLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLG 660 (946)
Q Consensus 589 l~~~~~Lr~L~L~~~~~-------~~lp~~i~~l~-~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 660 (946)
+.++++|+.|.+..+.. ..+|..+..++ +||+|++.++.++.+|..+ .+.+|+.|++++| .+..+|.++.
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~ 631 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVH 631 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-cccccccccc
Confidence 44899999999976532 24677777664 6999999999999999988 5899999999998 7899999999
Q ss_pred ccCccCeeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcc
Q 043855 661 NLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGK 740 (946)
Q Consensus 661 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~ 740 (946)
.+++|+.|++++|..+..+|. ++.+++|++|.+..+.... .....+.++++|+ .|.+.++...... +..+ ++
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~-~L~L~~c~~L~~L----p~~i-~l 703 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLV-ELPSSIQYLNKLE-DLDMSRCENLEIL----PTGI-NL 703 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCcc-ccchhhhccCCCC-EEeCCCCCCcCcc----CCcC-CC
Confidence 999999999999877888874 8889999999876654322 1223456667776 7777776654332 2222 67
Q ss_pred cccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCC-----------------------
Q 043855 741 KNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGD----------------------- 797 (946)
Q Consensus 741 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~----------------------- 797 (946)
++|+.|.+++|.... .++. .+.+|+.|+|++|.+..+|..+..
T Consensus 704 ~sL~~L~Lsgc~~L~-----------~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 704 KSLYRLNLSGCSRLK-----------SFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred CCCCEEeCCCCCCcc-----------cccc---ccCCcCeeecCCCccccccccccccccccccccccchhhcccccccc
Confidence 889999998874332 1111 135677777777777666654310
Q ss_pred -----CCCCCccEEEEecCCCCCCCC-CCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCccccccc
Q 043855 798 -----FSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWI 871 (946)
Q Consensus 798 -----~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 871 (946)
..+++|+.|+|++|.....+| .++++++|+.|+|++|+.++.+|... .+++|+.|++++|..+..+.
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEECCCCCcccccc
Confidence 012467777777777666666 57788888888888888777776542 26788888888887766543
Q ss_pred ccCCCCCCCCCCcccEeeecCCcCccccCC---CCCCCCCEEEEccccccc---ccCCCCCCccEEEEcCCCCCCCCC
Q 043855 872 PCGSSQGIELFPNLREFRILRCPKLQGTLP---ERLPELKMFVIQSCEELL---VSVTSLPTLCRFKIGGCKNVPDFF 943 (946)
Q Consensus 872 ~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp---~~l~~L~~L~i~~c~~l~---~~l~~l~~L~~L~l~~c~~l~~lp 943 (946)
...++|+.|+++++ .++ .+| ..+++|+.|++.+|+.+. ..+..+++|+.+++++|++++.++
T Consensus 843 --------~~~~nL~~L~Ls~n-~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 843 --------DISTNISDLNLSRT-GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred --------ccccccCEeECCCC-CCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 23467888888887 677 677 357889999999988773 345678888899999998887654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=3.4e-21 Score=204.65 Aligned_cols=309 Identities=19% Similarity=0.237 Sum_probs=174.8
Q ss_pred ccCceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhchh-hhcccCccCe
Q 043855 591 RLQRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKLCA-SLGNLINLHH 667 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~ 667 (946)
...+|..|+|.+|.|.++. +.+..+..||.||||.|.|+.+|. +|..=.++++|+|++| .++.+-. .|..+.+|-.
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~t 201 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLT 201 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchhee
Confidence 3344556666666555443 345555566666666666665544 2444456666666665 4444422 3555566666
Q ss_pred eecCCCCCccccccc-cCCCCCCcccCceecCC--CCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccC
Q 043855 668 LNNSNTDSLEEMPIG-IGKLTSLQTLCSFVVGK--DSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLK 744 (946)
Q Consensus 668 L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~--~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~ 744 (946)
|.++.|+ ++.+|.. |.+|++|+.|++..+.. ..+..+..|.+|.+|+ |.-+++.. .-...+-.+.+++
T Consensus 202 lkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk--lqrN~I~k------L~DG~Fy~l~kme 272 (873)
T KOG4194|consen 202 LKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK--LQRNDISK------LDDGAFYGLEKME 272 (873)
T ss_pred eecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh--hhhcCccc------ccCcceeeecccc
Confidence 6666665 5555544 44466666665433321 1122334444444332 11111111 1112344556667
Q ss_pred ceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCC--CcCcCCCCCCCccEEEEecCCCCCCCC-CCC
Q 043855 745 VLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEF--PTWLGDFSFSNLVTLKFEDCGMCTSLP-SVG 821 (946)
Q Consensus 745 ~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~ 821 (946)
+|+|..|.... -.-.++-.+..|+.|+++.|.+.++ ..|- ..++|+.|+|++|.+..--+ .+.
T Consensus 273 ~l~L~~N~l~~-----------vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws---ftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 273 HLNLETNRLQA-----------VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS---FTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred eeecccchhhh-----------hhcccccccchhhhhccchhhhheeecchhh---hcccceeEeccccccccCChhHHH
Confidence 77776654432 1223455667777888887776644 3444 35778888888777543222 466
Q ss_pred CCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCC
Q 043855 822 QLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLP 901 (946)
Q Consensus 822 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp 901 (946)
.|..|+.|+|++| .+.++....+ .++.+|+.|+|.+.. -.|....+......+|+|++|.+.+| +|+ .+|
T Consensus 339 ~L~~Le~LnLs~N-si~~l~e~af-----~~lssL~~LdLr~N~--ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk-~I~ 408 (873)
T KOG4194|consen 339 VLSQLEELNLSHN-SIDHLAEGAF-----VGLSSLHKLDLRSNE--LSWCIEDAAVAFNGLPSLRKLRLTGN-QLK-SIP 408 (873)
T ss_pred HHHHhhhhccccc-chHHHHhhHH-----HHhhhhhhhcCcCCe--EEEEEecchhhhccchhhhheeecCc-eee-ecc
Confidence 6777888888774 4555544322 236788888887643 12320111222456899999999998 888 788
Q ss_pred ----CCCCCCCEEEEcccccc---cccCCCCCCccEEEEc
Q 043855 902 ----ERLPELKMFVIQSCEEL---LVSVTSLPTLCRFKIG 934 (946)
Q Consensus 902 ----~~l~~L~~L~i~~c~~l---~~~l~~l~~L~~L~l~ 934 (946)
..+++|+.|++.++..- +..+..+ .|++|-+.
T Consensus 409 krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 47889999999876543 3455566 77777654
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.5e-20 Score=199.83 Aligned_cols=277 Identities=20% Similarity=0.170 Sum_probs=145.4
Q ss_pred hhcccCceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCccccc-cchhcCCCCcEEecCCCCchhhchhh-hcccCc
Q 043855 588 QLLRLQRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVLP-ESVNKLYKLQTLLLEDCDRLKKLCAS-LGNLIN 664 (946)
Q Consensus 588 ~l~~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~ 664 (946)
.+.-++.||+|||+.|.|+++| .+|..-.++++|+|++|.|+.+- ..|..|.+|.+|.|+.| .+..+|.. |.+|++
T Consensus 144 ~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 144 ELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPK 222 (873)
T ss_pred HHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcch
Confidence 3345566666677666666665 34555566666777766666552 34666666666666666 55666543 444666
Q ss_pred cCeeecCCCCCcccc-ccccCCCCCCcccCceec--CCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCccc
Q 043855 665 LHHLNNSNTDSLEEM-PIGIGKLTSLQTLCSFVV--GKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKK 741 (946)
Q Consensus 665 L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~~~~~--~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~ 741 (946)
|+.|++..|. +..+ -..|..|.+|+.|.+-.+ ....+..+-.+.++.+| .|..+.+..++ ...+-+++
T Consensus 223 L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l--~L~~N~l~~vn------~g~lfgLt 293 (873)
T KOG4194|consen 223 LESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL--NLETNRLQAVN------EGWLFGLT 293 (873)
T ss_pred hhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccccee--ecccchhhhhh------cccccccc
Confidence 6666666665 4332 122555666665544322 22223344444555544 23333333221 12355666
Q ss_pred ccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC-CC
Q 043855 742 NLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP-SV 820 (946)
Q Consensus 742 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l 820 (946)
.|+.|+|++|.+.. ...++++.++.|+.|+|+.|.+.++|..-.. .+..|++|.|+.|.+...-. .+
T Consensus 294 ~L~~L~lS~NaI~r-----------ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~-~L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 294 SLEQLDLSYNAIQR-----------IHIDSWSFTQKLKELDLSSNRITRLDEGSFR-VLSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred hhhhhccchhhhhe-----------eecchhhhcccceeEeccccccccCChhHHH-HHHHhhhhcccccchHHHHhhHH
Confidence 66666666654432 2334555566666677766666666543221 45666666666666422111 34
Q ss_pred CCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCc
Q 043855 821 GQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCP 894 (946)
Q Consensus 821 ~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~ 894 (946)
-.+.+|+.|+|++|..-..+.. +.....++++|+.|.+.+. +++.+. .. ....++.|++|++.+|+
T Consensus 362 ~~lssL~~LdLr~N~ls~~IED---aa~~f~gl~~LrkL~l~gN-qlk~I~-kr---Afsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIED---AAVAFNGLPSLRKLRLTGN-QLKSIP-KR---AFSGLEALEHLDLGDNA 427 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEec---chhhhccchhhhheeecCc-eeeecc-hh---hhccCcccceecCCCCc
Confidence 4566666666665532222211 1111233666666666653 233332 11 13456666666666663
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=3.6e-21 Score=195.84 Aligned_cols=223 Identities=27% Similarity=0.275 Sum_probs=130.4
Q ss_pred cccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhc
Q 043855 558 NLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNK 637 (946)
Q Consensus 558 ~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~ 637 (946)
.+..+..+.++....+. ..+.|+.+.....|+.|++++|.+.++|++|+.+..|..|+..+|++..+|..++.
T Consensus 86 aig~l~~l~~l~vs~n~-------ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~ 158 (565)
T KOG0472|consen 86 AIGELEALKSLNVSHNK-------LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVN 158 (565)
T ss_pred HHHHHHHHHHhhcccch-------HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHH
Confidence 34444455555544432 24456666677777777777777777777777777777777777777777777777
Q ss_pred CCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCe
Q 043855 638 LYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGT 717 (946)
Q Consensus 638 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~ 717 (946)
+..|..|++.+| .++.+|+..-+++.|++||...|- ++.+|+.+|.|.+|..|++..+....-..+..+..|..+.
T Consensus 159 ~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh-- 234 (565)
T KOG0472|consen 159 LSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELH-- 234 (565)
T ss_pred HHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHH--
Confidence 777777777776 666666665557777777777665 7777777777777777665444332222333333333221
Q ss_pred eEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCC
Q 043855 718 LNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGD 797 (946)
Q Consensus 718 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 797 (946)
+..+.+ .....+.+.++++|..|+|+.|.... .+..+..+.+|++|++++|.++.+|..++
T Consensus 235 ~g~N~i------~~lpae~~~~L~~l~vLDLRdNklke------------~Pde~clLrsL~rLDlSNN~is~Lp~sLg- 295 (565)
T KOG0472|consen 235 VGENQI------EMLPAEHLKHLNSLLVLDLRDNKLKE------------VPDEICLLRSLERLDLSNNDISSLPYSLG- 295 (565)
T ss_pred hcccHH------HhhHHHHhcccccceeeecccccccc------------CchHHHHhhhhhhhcccCCccccCCcccc-
Confidence 111111 11111223455666666666654443 34444445566666666666666666555
Q ss_pred CCCCCccEEEEecCC
Q 043855 798 FSFSNLVTLKFEDCG 812 (946)
Q Consensus 798 ~~l~~L~~L~L~~~~ 812 (946)
++ .|+.|.+.||+
T Consensus 296 -nl-hL~~L~leGNP 308 (565)
T KOG0472|consen 296 -NL-HLKFLALEGNP 308 (565)
T ss_pred -cc-eeeehhhcCCc
Confidence 34 55555555554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=1e-19 Score=185.31 Aligned_cols=234 Identities=24% Similarity=0.305 Sum_probs=135.9
Q ss_pred hhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCe
Q 043855 588 QLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHH 667 (946)
Q Consensus 588 ~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 667 (946)
++-++..|.+|++++|.+.++|.+|+.+..+..|+.++|++.++|+.++.+.+|..|+.++| .+.++|++++.+..|..
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLED 141 (565)
T ss_pred hhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhh
Confidence 34455556666666666666666666666666666666666666666666666666666655 45555555666666666
Q ss_pred eecCCCCCccccccccCCCCCCcccCceecCCCC-CCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCce
Q 043855 668 LNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDS-GSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVL 746 (946)
Q Consensus 668 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~-~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 746 (946)
|+..+|+ +..+|.+++.+.+|..|....+.... ....-.++.|.+| +. ..+.-+.++..++++.+|..|
T Consensus 142 l~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l----d~-----~~N~L~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 142 LDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHL----DC-----NSNLLETLPPELGGLESLELL 211 (565)
T ss_pred hhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhc----cc-----chhhhhcCChhhcchhhhHHH
Confidence 5555554 55555555555555554332221110 0000112222222 11 111223344445555555555
Q ss_pred EEEecCCCCCCCchhhhh----------HHhH-hccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCC
Q 043855 747 LLRWTCSTDDSSLREAET----------EKGV-LTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCT 815 (946)
Q Consensus 747 ~L~~~~~~~~~~~~~~~~----------~~~~-~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 815 (946)
+|..|.+...+....+.. .... .+..+.+++|..|+++.|++.++|+.+. -+.+|.+|++++|.+..
T Consensus 212 yL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 212 YLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISS 289 (565)
T ss_pred HhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCcccc
Confidence 555554444332221111 1112 2344578899999999999999999887 67899999999998766
Q ss_pred CCCCCCCCCCCceeeecccc
Q 043855 816 SLPSVGQLPSLKHLVVRRMS 835 (946)
Q Consensus 816 ~l~~l~~l~~L~~L~L~~~~ 835 (946)
-.+.+|++ .|+.|.+.|++
T Consensus 290 Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 290 LPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred CCcccccc-eeeehhhcCCc
Confidence 55589999 99999998875
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=1.5e-19 Score=202.71 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=30.1
Q ss_pred CCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCC
Q 043855 775 HKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGM 813 (946)
Q Consensus 775 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~ 813 (946)
+.+|++++++.+.+..+|+|+. .+.+|+.|...+|.+
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~--~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIG--ACANLEALNANHNRL 276 (1081)
T ss_pred cccceeeecchhhhhcchHHHH--hcccceEecccchhH
Confidence 5688888888888888888887 678888888877765
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=8.4e-16 Score=179.28 Aligned_cols=79 Identities=22% Similarity=0.247 Sum_probs=58.9
Q ss_pred CceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCC
Q 043855 593 QRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSN 672 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 672 (946)
..-.+|+|+++.++.+|..+. .+|+.|++++|.++.+|.. +++|++|++++| .+..+|.. .++|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 446678888888888887765 3788888888888888753 578888888887 67777753 35777888888
Q ss_pred CCCcccccc
Q 043855 673 TDSLEEMPI 681 (946)
Q Consensus 673 ~~~~~~~p~ 681 (946)
|. +..+|.
T Consensus 272 N~-L~~Lp~ 279 (788)
T PRK15387 272 NP-LTHLPA 279 (788)
T ss_pred Cc-hhhhhh
Confidence 76 666665
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=6e-18 Score=190.11 Aligned_cols=165 Identities=16% Similarity=0.187 Sum_probs=118.2
Q ss_pred hHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceeeeccccCceeeCccccC
Q 043855 767 GVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVRRMSRVKRLGSEFYG 846 (946)
Q Consensus 767 ~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~ 846 (946)
..++++..+.+|+.+.+..|.+..+|.-+. ...+|+.|.+..|.+.-..|.++.+.+|++|+|..+ .+..+|..++.
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l~~lp~ri~--~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRLVALPLRIS--RITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLA 331 (1081)
T ss_pred cchHHHHhcccceEecccchhHHhhHHHHh--hhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc-cccccchHHHh
Confidence 355777888999999999999988888776 678899999998886544556777999999999875 56666665433
Q ss_pred CCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccc-cCC--CCCCCCCEEEEccc--cccc-c
Q 043855 847 NDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQG-TLP--ERLPELKMFVIQSC--EELL-V 920 (946)
Q Consensus 847 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~-~lp--~~l~~L~~L~i~~c--~~l~-~ 920 (946)
. .-.+|..|+.+... +.... ..+...++.|+.|.+.+| .|++ .+| .++..|+.|+++++ ..++ .
T Consensus 332 v----~~~~l~~ln~s~n~-l~~lp----~~~e~~~~~Lq~LylanN-~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 332 V----LNASLNTLNVSSNK-LSTLP----SYEENNHAALQELYLANN-HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred h----hhHHHHHHhhhhcc-ccccc----cccchhhHHHHHHHHhcC-cccccchhhhccccceeeeeecccccccCCHH
Confidence 2 01124444433221 11111 111357889999999999 6764 556 57899999999987 3444 3
Q ss_pred cCCCCCCccEEEEcCCCCCCCCCCC
Q 043855 921 SVTSLPTLCRFKIGGCKNVPDFFHS 945 (946)
Q Consensus 921 ~l~~l~~L~~L~l~~c~~l~~lp~~ 945 (946)
.+.+++.|++|+++|+ +|+.||++
T Consensus 402 ~~~kle~LeeL~LSGN-kL~~Lp~t 425 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGN-KLTTLPDT 425 (1081)
T ss_pred HHhchHHhHHHhcccc-hhhhhhHH
Confidence 6788999999999999 89999875
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.57 E-value=1.6e-15 Score=181.04 Aligned_cols=333 Identities=26% Similarity=0.337 Sum_probs=197.4
Q ss_pred cccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCC--CccCCc-cccCCCCCcEEeccCCC-cccccc
Q 043855 558 NLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYE--IFELPD-SIGELRHLRYLNLSRTL-IEVLPE 633 (946)
Q Consensus 558 ~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~--~~~lp~-~i~~l~~Lr~L~Ls~~~-i~~lp~ 633 (946)
+..+...+|.....++. ......-..++.|++|-+.+|. +..++. .|..|++||+|||++|. +.+||+
T Consensus 518 ~~~~~~~~rr~s~~~~~--------~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNK--------IEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred cccchhheeEEEEeccc--------hhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 34455566666665543 1112222366689999999985 666664 47889999999999764 679999
Q ss_pred chhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCceecC-CCCCCChhcccccc
Q 043855 634 SVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVG-KDSGSGLRELKLLK 712 (946)
Q Consensus 634 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~~~~L~~L~ 712 (946)
+|++|.+||+|+++++ .+..+|.++++|++|.+|++..+.....+|..+..|++|++|.++... ..+...+.++.+|+
T Consensus 590 ~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred HHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 9999999999999998 899999999999999999999988666665556669999999887664 33345566777777
Q ss_pred ccCCeeEEecCCCCCCccccccccCCcccccCceEEEec-CCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCC
Q 043855 713 HLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWT-CSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEF 791 (946)
Q Consensus 713 ~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 791 (946)
+|+ .+.+..... .....+..+.+|.++...-. .... .......+..+.+|+.|.|.++.+.+.
T Consensus 669 ~L~-~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~~~~~---------~~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 669 HLE-NLSITISSV------LLLEDLLGMTRLRSLLQSLSIEGCS---------KRTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred chh-hheeecchh------HhHhhhhhhHHHHHHhHhhhhcccc---------cceeecccccccCcceEEEEcCCCchh
Confidence 666 444422110 11112223333332221110 0000 012233445566666666666665432
Q ss_pred Cc-CcCC---CC-CCCccEEEEecCCCCCCCCCCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcc
Q 043855 792 PT-WLGD---FS-FSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMRE 866 (946)
Q Consensus 792 p~-~~~~---~~-l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 866 (946)
.. |... .. |+++..+...+|.....+.+..-.|+|+.|.+..|..++.+.+.. ..+..++.+
T Consensus 733 ~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~------k~~~~l~~~------- 799 (889)
T KOG4658|consen 733 VIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKL------KALLELKEL------- 799 (889)
T ss_pred hcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHH------HHhhhcccE-------
Confidence 21 2110 01 334444444444443333333334555555555555444332111 001111110
Q ss_pred cccccccCCCCCCCCCCcccEe----eecCCcCccccCCCCCCCCCEEEEcccccccccCCCCCCccEEEEcCC-CCCCC
Q 043855 867 WEDWIPCGSSQGIELFPNLREF----RILRCPKLQGTLPERLPELKMFVIQSCEELLVSVTSLPTLCRFKIGGC-KNVPD 941 (946)
Q Consensus 867 l~~~~~~~~~~~~~~~p~L~~L----~l~~c~~L~~~lp~~l~~L~~L~i~~c~~l~~~l~~l~~L~~L~l~~c-~~l~~ 941 (946)
...|+++..+ ++.+.+++. ..|-.++.|+.+.+..||++ ..+|.+.++.+.+| +++..
T Consensus 800 ------------i~~f~~~~~l~~~~~l~~l~~i~-~~~l~~~~l~~~~ve~~p~l----~~~P~~~~~~i~~~~~~~~~ 862 (889)
T KOG4658|consen 800 ------------ILPFNKLEGLRMLCSLGGLPQLY-WLPLSFLKLEELIVEECPKL----GKLPLLSTLTIVGCEEKLKE 862 (889)
T ss_pred ------------EecccccccceeeecCCCCceeE-ecccCccchhheehhcCccc----ccCccccccceeccccceee
Confidence 1223333333 333333443 44555666999999999877 57888999999997 78888
Q ss_pred CCCC
Q 043855 942 FFHS 945 (946)
Q Consensus 942 lp~~ 945 (946)
+|.+
T Consensus 863 ~~~~ 866 (889)
T KOG4658|consen 863 YPDG 866 (889)
T ss_pred cCCc
Confidence 8875
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.54 E-value=1.5e-14 Score=170.18 Aligned_cols=242 Identities=20% Similarity=0.223 Sum_probs=170.4
Q ss_pred CceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCC
Q 043855 593 QRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSN 672 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 672 (946)
.+..+|+++++.++.+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 457889999999999998764 589999999999999998775 59999999998 6888887654 4799999999
Q ss_pred CCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecC
Q 043855 673 TDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTC 752 (946)
Q Consensus 673 ~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 752 (946)
|. +..+|..+. ++|+.|++..+. +.. ++..+. ++|+.|++++|.
T Consensus 251 N~-L~~LP~~l~--s~L~~L~Ls~N~------------L~~-------------------LP~~l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 251 NR-ITELPERLP--SALQSLDLFHNK------------ISC-------------------LPENLP--EELRYLSVYDNS 294 (754)
T ss_pred Cc-cCcCChhHh--CCCCEEECcCCc------------cCc-------------------cccccC--CCCcEEECCCCc
Confidence 98 778887653 356666442111 000 001111 368888888875
Q ss_pred CCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceeee
Q 043855 753 STDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVV 831 (946)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L 831 (946)
.... +..+ +++|+.|++++|.+..+|..+ .++|+.|++++|.+.. +| .+ .++|+.|+|
T Consensus 295 Lt~L------------P~~l--p~sL~~L~Ls~N~Lt~LP~~l----~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~L 353 (754)
T PRK15370 295 IRTL------------PAHL--PSGITHLNVQSNSLTALPETL----PPGLKTLEAGENALTS-LPASL--PPELQVLDV 353 (754)
T ss_pred cccC------------cccc--hhhHHHHHhcCCccccCCccc----cccceeccccCCcccc-CChhh--cCcccEEEC
Confidence 5431 1111 247899999999988888654 3689999999998644 55 23 378999999
Q ss_pred ccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCCCC-------C
Q 043855 832 RRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLPER-------L 904 (946)
Q Consensus 832 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~~-------l 904 (946)
++|. +..+|..+ .++|+.|+++++. +..+. ....+.|+.|++++| +|+ .+|.. +
T Consensus 354 s~N~-L~~LP~~l--------p~~L~~LdLs~N~-Lt~LP-------~~l~~sL~~LdLs~N-~L~-~LP~sl~~~~~~~ 414 (754)
T PRK15370 354 SKNQ-ITVLPETL--------PPTITTLDVSRNA-LTNLP-------ENLPAALQIMQASRN-NLV-RLPESLPHFRGEG 414 (754)
T ss_pred CCCC-CCcCChhh--------cCCcCEEECCCCc-CCCCC-------HhHHHHHHHHhhccC-Ccc-cCchhHHHHhhcC
Confidence 9874 55555432 4689999998863 44333 112347899999998 787 67742 3
Q ss_pred CCCCEEEEccccc
Q 043855 905 PELKMFVIQSCEE 917 (946)
Q Consensus 905 ~~L~~L~i~~c~~ 917 (946)
+++..|++.+++.
T Consensus 415 ~~l~~L~L~~Npl 427 (754)
T PRK15370 415 PQPTRIIVEYNPF 427 (754)
T ss_pred CCccEEEeeCCCc
Confidence 6678888877664
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=7e-14 Score=163.38 Aligned_cols=88 Identities=23% Similarity=0.183 Sum_probs=60.4
Q ss_pred ceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCCC
Q 043855 594 RLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNT 673 (946)
Q Consensus 594 ~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 673 (946)
+|+.|++.+|+++.+|. .+++|++|+|++|.++.+|.. .++|++|++++| .+..+|... ++|+.|++++|
T Consensus 223 ~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls~N 292 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN-PLTHLPALP---SGLCKLWIFGN 292 (788)
T ss_pred CCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCC-chhhhhhch---hhcCEEECcCC
Confidence 67778888888877775 256788888888888777753 357778888877 566676532 45777778777
Q ss_pred CCccccccccCCCCCCcccCce
Q 043855 674 DSLEEMPIGIGKLTSLQTLCSF 695 (946)
Q Consensus 674 ~~~~~~p~~i~~l~~L~~L~~~ 695 (946)
. +..+|.. +++|+.|++.
T Consensus 293 ~-Lt~LP~~---p~~L~~LdLS 310 (788)
T PRK15387 293 Q-LTSLPVL---PPGLQELSVS 310 (788)
T ss_pred c-ccccccc---ccccceeECC
Confidence 6 6666652 3456666443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=2.2e-13 Score=160.47 Aligned_cols=227 Identities=16% Similarity=0.192 Sum_probs=157.1
Q ss_pred CceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCC
Q 043855 593 QRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSN 672 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 672 (946)
+.|+.|+|++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++| .+..+|..+. .+|+.|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECcC
Confidence 468899999999998887665 589999999999998887664 47999999998 6778887764 5799999998
Q ss_pred CCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecC
Q 043855 673 TDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTC 752 (946)
Q Consensus 673 ~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 752 (946)
|. +..+|..+. .+|+.|.+..+. ++.+ +..+ .++|+.|++++|.
T Consensus 272 N~-L~~LP~~l~--~sL~~L~Ls~N~------------Lt~L-------------------P~~l--p~sL~~L~Ls~N~ 315 (754)
T PRK15370 272 NK-ISCLPENLP--EELRYLSVYDNS------------IRTL-------------------PAHL--PSGITHLNVQSNS 315 (754)
T ss_pred Cc-cCccccccC--CCCcEEECCCCc------------cccC-------------------cccc--hhhHHHHHhcCCc
Confidence 86 777887553 366666543221 0000 0001 1357777887765
Q ss_pred CCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCC-CCCCCCCceeee
Q 043855 753 STDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPS-VGQLPSLKHLVV 831 (946)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L 831 (946)
... ++.. .+++|+.|++++|.+..+|..+. ++|+.|+|++|.+. .+|. + .++|+.|+|
T Consensus 316 Lt~------------LP~~--l~~sL~~L~Ls~N~Lt~LP~~l~----~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdL 374 (754)
T PRK15370 316 LTA------------LPET--LPPGLKTLEAGENALTSLPASLP----PELQVLDVSKNQIT-VLPETL--PPTITTLDV 374 (754)
T ss_pred ccc------------CCcc--ccccceeccccCCccccCChhhc----CcccEEECCCCCCC-cCChhh--cCCcCEEEC
Confidence 543 1111 13689999999999999997653 79999999999864 4552 3 378999999
Q ss_pred ccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCc
Q 043855 832 RRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCP 894 (946)
Q Consensus 832 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~ 894 (946)
++| .+..+|..+ ..+|+.|+++++. +..+. ...+.....+|++..|++.+|+
T Consensus 375 s~N-~Lt~LP~~l--------~~sL~~LdLs~N~-L~~LP-~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 375 SRN-ALTNLPENL--------PAALQIMQASRNN-LVRLP-ESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCC-cCCCCCHhH--------HHHHHHHhhccCC-cccCc-hhHHHHhhcCCCccEEEeeCCC
Confidence 987 455665543 3468888888743 33332 1100012346889999999984
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.43 E-value=1.1e-11 Score=156.08 Aligned_cols=293 Identities=15% Similarity=0.179 Sum_probs=179.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeC-CCCCHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVS-DDFDVVRLIKVI 262 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i 262 (946)
..+|-|+. |.+.|... ...+++.|+|++|.||||++.++... ++.++|+++. .+.++..+...+
T Consensus 14 ~~~~~R~r----l~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRER----LLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchH----HHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHH
Confidence 34566654 44545322 35689999999999999999998852 2268999996 445666777777
Q ss_pred HHHhcCCCCC------------CcccHHHHHHHHHHHhC--CceEEEEEcCCCCCChhhHhhhhcc-CCCCCCCcEEEEE
Q 043855 263 LRSFVADPNV------------DNRDLILLQLQLKKQLS--GKKFLFVLDDVWNESYNDWVELSHP-FEAGAPGSKIIVT 327 (946)
Q Consensus 263 l~~l~~~~~~------------~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~w~~~~~~-l~~~~~gs~iivT 327 (946)
+..+...... ...+...+...+-..+. +.+++|||||+...+.......... +.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7777422110 00122222322323332 6799999999976543333333322 2233456688899
Q ss_pred cCChh---HHHhhCCCCcEeCC----CCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhcc
Q 043855 328 TRNQG---VAAIMGTVPAYQLK----KLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRG 400 (946)
Q Consensus 328 tR~~~---v~~~~~~~~~~~l~----~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~ 400 (946)
||... ...........++. +|+.+|+.++|.......- -.+....|++.|+|.|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-------EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC-------CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99842 11211122345555 9999999999986542211 1245678999999999999999877754
Q ss_pred CCChHHHHHHHhhhcccCcc-cccccchhhhh-hccCCChhHHHHhhhhccCCCCCcccHHHHHHHHHHhCCccccCCCC
Q 043855 401 HHDKCDWEGVLRAKIWELPE-ERASFIPDLAI-SYRHLPPTLKQCFAYCSLFPKGYEFEEKEIILLWSAVGFLDHVQSGN 478 (946)
Q Consensus 401 ~~~~~~w~~~~~~~~~~~~~-~~~~~~~~l~~-sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~ 478 (946)
...... ... +.+.. ....+...+.- .|+.||++.+..+...|+++ .|+.+.+-. +..
T Consensus 232 ~~~~~~--~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~------l~~------ 290 (903)
T PRK04841 232 NNSSLH--DSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVR------VTG------ 290 (903)
T ss_pred CCCchh--hhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHH------HcC------
Confidence 321100 000 11111 11224444333 47899999999999999996 334332221 111
Q ss_pred cHHHHHHHHHHHHHhCcCCcc-cCCCCCceEechhHHHHHHHhc
Q 043855 479 ASEDLGRDIFRELCARSFFQE-SGEDTSGFVMHDLVNGLAQWAG 521 (946)
Q Consensus 479 ~~e~~~~~~l~~L~~~~l~~~-~~~~~~~~~~Hdlv~~~a~~~~ 521 (946)
.+.+...+++|.+.+++.. .+.+...|+.|++++++.....
T Consensus 291 --~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 --EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1224678999999999753 3334457899999999987654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=6.8e-15 Score=133.09 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=26.8
Q ss_pred ccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCC
Q 043855 770 TMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGM 813 (946)
Q Consensus 770 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~ 813 (946)
..++.+.+|+.|.++.|...++|..++ .+..|++|++.+|.+
T Consensus 144 ~dvg~lt~lqil~lrdndll~lpkeig--~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 144 PDVGKLTNLQILSLRDNDLLSLPKEIG--DLTRLRELHIQGNRL 185 (264)
T ss_pred hhhhhhcceeEEeeccCchhhCcHHHH--HHHHHHHHhccccee
Confidence 344455666666666666666676665 566677777776664
No 22
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.38 E-value=9.8e-11 Score=132.05 Aligned_cols=302 Identities=15% Similarity=0.074 Sum_probs=179.6
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHH
Q 043855 182 NEAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKV 261 (946)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 261 (946)
.+..++||++++++|...+...-. ......+.|+|++|+|||++++.++++.......-..+++++....+...++.+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 345799999999999999854321 233456789999999999999999985432222234667777777788899999
Q ss_pred HHHHhcCC-CCCCcccHHHHHHHHHHHhC--CceEEEEEcCCCCCC----hhhHhhhhccCCCCCCCcE--EEEEcCChh
Q 043855 262 ILRSFVAD-PNVDNRDLILLQLQLKKQLS--GKKFLFVLDDVWNES----YNDWVELSHPFEAGAPGSK--IIVTTRNQG 332 (946)
Q Consensus 262 il~~l~~~-~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~w~~~~~~l~~~~~gs~--iivTtR~~~ 332 (946)
++.++... ......+...+...+.+.+. +++.+||||+++... .+.+..+...+.. ..+++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 99999763 22133345666666776665 457899999997532 1223333222221 12333 566666554
Q ss_pred HHHhhC-------CCCcEeCCCCChHHHHHHHHHhhcCCC--CCCCchhHHHHHHHHHHhcCCChhHHHHHhhhh--c--
Q 043855 333 VAAIMG-------TVPAYQLKKLSDHDCLALFARHSLGTR--DFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLL--R-- 399 (946)
Q Consensus 333 v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~a~~~~--~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l--~-- 399 (946)
+..... ....+.+.+++.++..+++..++-... ..-....++.+++......|..+.|+.++-.+. +
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 433221 124679999999999999987763221 112223344444444444566778887765432 1
Q ss_pred -cC--CChHHHHHHHhhhcccCcccccccchhhhhhccCCChhHHHHhhhhccC-CC-CCcccHHHHHH--HHHHhCCcc
Q 043855 400 -GH--HDKCDWEGVLRAKIWELPEERASFIPDLAISYRHLPPTLKQCFAYCSLF-PK-GYEFEEKEIIL--LWSAVGFLD 472 (946)
Q Consensus 400 -~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~f-p~-~~~i~~~~li~--~Wiaeg~i~ 472 (946)
+. -+.++...+..... .....-.+..||.+.|..+..++.. .. ...+....+.. ..+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 23455554444320 1223456789999888766555432 21 13455555543 233332211
Q ss_pred ccCCCCcHHHHHHHHHHHHHhCcCCccc
Q 043855 473 HVQSGNASEDLGRDIFRELCARSFFQES 500 (946)
Q Consensus 473 ~~~~~~~~e~~~~~~l~~L~~~~l~~~~ 500 (946)
. .........|+++|...|+++..
T Consensus 335 ~----~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 E----PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred C----cCcHHHHHHHHHHHHhcCCeEEE
Confidence 1 11234456799999999999764
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=1.2e-14 Score=131.58 Aligned_cols=150 Identities=27% Similarity=0.299 Sum_probs=118.8
Q ss_pred ccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCC
Q 043855 561 DIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYK 640 (946)
Q Consensus 561 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~ 640 (946)
++++...|.+..+. ...+++.+..+++|++|++++|+++++|.+|+.|++||.|++.-|++..+|..|+.++.
T Consensus 31 ~~s~ITrLtLSHNK-------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 31 NMSNITRLTLSHNK-------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred chhhhhhhhcccCc-------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence 44445555555442 24567888899999999999999999999999999999999999999999999999999
Q ss_pred CcEEecCCCCch-hhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeE
Q 043855 641 LQTLLLEDCDRL-KKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLN 719 (946)
Q Consensus 641 L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~ 719 (946)
|++|||.+|+.. ..+|..+..|+.|+-|++++|. +..+|..+|++++||.|.+.++... ...++++.|++|+ .|.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll--~lpkeig~lt~lr-elh 179 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLL--SLPKEIGDLTRLR-ELH 179 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchh--hCcHHHHHHHHHH-HHh
Confidence 999999998433 4588889999999999999997 8899999999999999976554322 2234455555554 444
Q ss_pred Ee
Q 043855 720 IS 721 (946)
Q Consensus 720 i~ 721 (946)
|.
T Consensus 180 iq 181 (264)
T KOG0617|consen 180 IQ 181 (264)
T ss_pred cc
Confidence 43
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.30 E-value=1.3e-13 Score=141.35 Aligned_cols=231 Identities=21% Similarity=0.146 Sum_probs=108.3
Q ss_pred ccCceeEEEecCCCCccC-CccccCCCCCcEEeccC-CCccccccc-hhcCCCCcEEecCCCCchhhc-hhhhcccCccC
Q 043855 591 RLQRLRVFSLCGYEIFEL-PDSIGELRHLRYLNLSR-TLIEVLPES-VNKLYKLQTLLLEDCDRLKKL-CASLGNLINLH 666 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~Ls~-~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~ 666 (946)
.+++||.|||+.|+|+.| |+.|.++..|-.|-+-+ |+|+.+|+. |++|..||-|.+.-| .+..+ ...+..|++|.
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~ 167 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLS 167 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcc
Confidence 556666666666665554 45555555554444433 556666553 555666666665555 33222 23355566666
Q ss_pred eeecCCCCCcccccc-ccCCCCCCcccCceecCCCCCCChhcccc-----------ccccC-C---eeEEecC-------
Q 043855 667 HLNNSNTDSLEEMPI-GIGKLTSLQTLCSFVVGKDSGSGLRELKL-----------LKHLH-G---TLNISKL------- 723 (946)
Q Consensus 667 ~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~L~~-----------L~~L~-~---~L~i~~l------- 723 (946)
.|.+.+|. +..++. .+..+.+++++.+..+.......+..+.. .+... . .-.+...
T Consensus 168 lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c 246 (498)
T KOG4237|consen 168 LLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC 246 (498)
T ss_pred hhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh
Confidence 66665554 555554 25555555555432221111111110000 00000 0 0000000
Q ss_pred --CCC------CC--ccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCc
Q 043855 724 --ENV------KC--IVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPT 793 (946)
Q Consensus 724 --~~~------~~--~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 793 (946)
+.+ .+ ........+.++++|++|+|++|.+.. .-..++.....++.|.|..|.+..+..
T Consensus 247 ~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-----------i~~~aFe~~a~l~eL~L~~N~l~~v~~ 315 (498)
T KOG4237|consen 247 SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-----------IEDGAFEGAAELQELYLTRNKLEFVSS 315 (498)
T ss_pred hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-----------hhhhhhcchhhhhhhhcCcchHHHHHH
Confidence 000 00 000111224556667777776665543 112234445556666666666554444
Q ss_pred CcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceeeecccc
Q 043855 794 WLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMS 835 (946)
Q Consensus 794 ~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 835 (946)
.+.. .+..|+.|+|.+|.+....| .+..+.+|..|+|-.|+
T Consensus 316 ~~f~-~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 316 GMFQ-GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred Hhhh-ccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 3332 56677777777777655444 45666666666665443
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.29 E-value=1.2e-09 Score=121.81 Aligned_cols=302 Identities=12% Similarity=0.052 Sum_probs=174.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc-ccC---CceEEEEeCCCCCHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVR-DHF---DLKAWTCVSDDFDVVRLI 259 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~~~~~~~~~~~ 259 (946)
..++||++++++|..+|..... +.....+.|+|++|+|||++++.+++...-. ... -..+|+.+....+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 4699999999999999865321 2344678999999999999999999742110 110 145788887777788899
Q ss_pred HHHHHHhc---CCCCCCcccHHHHHHHHHHHhC--CceEEEEEcCCCCCC---hhhHhhhhccC-CCCC--CCcEEEEEc
Q 043855 260 KVILRSFV---ADPNVDNRDLILLQLQLKKQLS--GKKFLFVLDDVWNES---YNDWVELSHPF-EAGA--PGSKIIVTT 328 (946)
Q Consensus 260 ~~il~~l~---~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---~~~w~~~~~~l-~~~~--~gs~iivTt 328 (946)
..|++++. ........+..+....+.+.+. +++++||||+++... ......+.... .... ....+|.+|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99999984 2222122334445555555553 568999999997642 11112222210 1111 223445555
Q ss_pred CChhHHHhhC-------CCCcEeCCCCChHHHHHHHHHhhcCC-CCCCCchhHHHHHHHHHHhcCCChhH-HHHHhhhh-
Q 043855 329 RNQGVAAIMG-------TVPAYQLKKLSDHDCLALFARHSLGT-RDFSSHKSLEKIGREIVTKCDGLPLA-AKTLGGLL- 398 (946)
Q Consensus 329 R~~~v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~a~~~-~~~~~~~~l~~~~~~i~~~~~GlPLa-i~~~~~~l- 398 (946)
........+. ....+.+.+++.++..+++..++-.. ......++..+....++..+.|.|-. +.++-...
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5443322111 12468899999999999998876311 11122334444555677777888844 33332211
Q ss_pred -c--c-C--CChHHHHHHHhhhcccCcccccccchhhhhhccCCChhHHHHhhhhccC--CCCCcccHHHHHHHH--HHh
Q 043855 399 -R--G-H--HDKCDWEGVLRAKIWELPEERASFIPDLAISYRHLPPTLKQCFAYCSLF--PKGYEFEEKEIILLW--SAV 468 (946)
Q Consensus 399 -~--~-~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~f--p~~~~i~~~~li~~W--iae 468 (946)
. . . -+.++...+.+... .....-++..||.+.|..+..++.. ..+..+....+...+ +++
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 1 1 1 23333333332210 1223446778999888666555422 134446666666533 222
Q ss_pred CCccccCCCCcHHHHHHHHHHHHHhCcCCcccC
Q 043855 469 GFLDHVQSGNASEDLGRDIFRELCARSFFQESG 501 (946)
Q Consensus 469 g~i~~~~~~~~~e~~~~~~l~~L~~~~l~~~~~ 501 (946)
.+ . .....+....+|++.|...|++....
T Consensus 323 ~~-~---~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 323 DI-G---VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred hc-C---CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 11 1 11234567788999999999998653
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=5.4e-13 Score=136.83 Aligned_cols=258 Identities=18% Similarity=0.210 Sum_probs=163.7
Q ss_pred eeEEEecCCCCccCC-ccccCCCCCcEEeccCCCcccc-ccchhcCCCCcEEecCCCCchhhchhh-hcccCccCeeecC
Q 043855 595 LRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVL-PESVNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLNNS 671 (946)
Q Consensus 595 Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 671 (946)
-..++|..|.|+.+| .+|+.+++||.||||+|.|+.+ |..|..|.+|-.|-+.+++.++.+|++ +++|..|+-|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 456889999999998 5789999999999999999988 888999999999999886699999986 8999999999998
Q ss_pred CCCCccccccc-cCCCCCCcccCceecCCCC--CCChhccccccccCCe----eEEecCCCCCCccccccccCCcccccC
Q 043855 672 NTDSLEEMPIG-IGKLTSLQTLCSFVVGKDS--GSGLRELKLLKHLHGT----LNISKLENVKCIVDAEEAQLDGKKNLK 744 (946)
Q Consensus 672 ~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~--~~~~~~L~~L~~L~~~----L~i~~l~~~~~~~~~~~~~l~~~~~L~ 744 (946)
-|. +..++.. +..|++|..|.++++.... ...+..+..++.+... ....++.-........+..+++.....
T Consensus 149 an~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 149 ANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred hhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 887 6666654 7888999888877764332 2234444444433200 000011100000000111111111111
Q ss_pred ceEEEecCCCCCCCch---------------hhhhHHhHhccCCCCCCcceEEEeecCCCCC-CcCcCCCCCCCccEEEE
Q 043855 745 VLLLRWTCSTDDSSLR---------------EAETEKGVLTMLKPHKNLEQICISGYGGTEF-PTWLGDFSFSNLVTLKF 808 (946)
Q Consensus 745 ~L~L~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L 808 (946)
...+...+........ +.-........+..+++|+.|++++|.++.+ +.|+. .+..+++|.|
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe--~~a~l~eL~L 305 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE--GAAELQELYL 305 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc--chhhhhhhhc
Confidence 1111111111100000 0000001112356789999999999998876 56776 6789999999
Q ss_pred ecCCCCCCCC--CCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeecc
Q 043855 809 EDCGMCTSLP--SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFE 862 (946)
Q Consensus 809 ~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 862 (946)
..|++.. +. .+..+..|+.|+|.+| .++.+.+..+.. ..+|.+|.+-
T Consensus 306 ~~N~l~~-v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~-----~~~l~~l~l~ 354 (498)
T KOG4237|consen 306 TRNKLEF-VSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQT-----LFSLSTLNLL 354 (498)
T ss_pred CcchHHH-HHHHhhhccccceeeeecCC-eeEEEecccccc-----cceeeeeehc
Confidence 9998532 22 4778899999999986 566665544332 4456666664
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=1e-09 Score=116.78 Aligned_cols=182 Identities=20% Similarity=0.178 Sum_probs=115.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHH----HHHHHHH
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLIL----LQLQLKK 286 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~----~~~~l~~ 286 (946)
.+++.|+|++|+|||||++.+++..... .+ ..+|+ +....+..+++..+...++.... . .+... +...+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~-~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-G-RDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-C-CCHHHHHHHHHHHHHH
Confidence 4688999999999999999999854322 11 22333 33345778888899888866543 1 22222 2222322
Q ss_pred H-hCCceEEEEEcCCCCCChhhHhhhhccCC---CCCCCcEEEEEcCChhHHHhhC----------CCCcEeCCCCChHH
Q 043855 287 Q-LSGKKFLFVLDDVWNESYNDWVELSHPFE---AGAPGSKIIVTTRNQGVAAIMG----------TVPAYQLKKLSDHD 352 (946)
Q Consensus 287 ~-l~~kr~LlVlDdv~~~~~~~w~~~~~~l~---~~~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~e 352 (946)
. ..+++.++|+||+|..+...++.+..... .......|++|.... ....+. ....+.+.+++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 36788999999999877666666543211 112223455555432 222111 13457899999999
Q ss_pred HHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhh
Q 043855 353 CLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLL 398 (946)
Q Consensus 353 ~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 398 (946)
..+++...+..........-..+..+.|++.++|.|..|+.++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987654322111112234788999999999999999998876
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.10 E-value=4e-12 Score=139.45 Aligned_cols=84 Identities=27% Similarity=0.267 Sum_probs=49.3
Q ss_pred ccCceeEEEecCCCCc-----cCCccccCCCCCcEEeccCCCccc-------cccchhcCCCCcEEecCCCCchhhchhh
Q 043855 591 RLQRLRVFSLCGYEIF-----ELPDSIGELRHLRYLNLSRTLIEV-------LPESVNKLYKLQTLLLEDCDRLKKLCAS 658 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~-----~lp~~i~~l~~Lr~L~Ls~~~i~~-------lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 658 (946)
.+..|++|++++|.++ .++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|......+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 4555777777777663 345556666667777777665542 2334555666666666666433334444
Q ss_pred hcccCc---cCeeecCCCC
Q 043855 659 LGNLIN---LHHLNNSNTD 674 (946)
Q Consensus 659 i~~L~~---L~~L~l~~~~ 674 (946)
+..+.+ |++|++++|.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 101 LESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHhccCcccEEEeeCCc
Confidence 444443 6666666665
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.08 E-value=5.5e-09 Score=113.26 Aligned_cols=278 Identities=16% Similarity=0.107 Sum_probs=151.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+|||+++.++.|..++..... ..+....+.++|++|+|||+||+.+++.. ...+ ..+..+..... ..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCc-hhHHHHH
Confidence 3599999999999988864321 12345568899999999999999999843 2222 12222111111 1222233
Q ss_pred HHhcCCCCCCcccH----HHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhHHHhh-C
Q 043855 264 RSFVADPNVDNRDL----ILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGVAAIM-G 338 (946)
Q Consensus 264 ~~l~~~~~~~~~~~----~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~~~~-~ 338 (946)
..+....-.-.++. ...+..+...+.+.+..+|+|+..+.. .| ...++ +.+-|..||+...+...+ .
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecCC---CeEEEEecCCccccCHHHHh
Confidence 33321110000000 112334555556666667776654331 11 11222 245566677765443321 1
Q ss_pred -CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhccCCChHHHHHHHhhhccc
Q 043855 339 -TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRGHHDKCDWEGVLRAKIWE 417 (946)
Q Consensus 339 -~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~ 417 (946)
-...+.+++++.++..+++.+.+..... .. -.+....|++.|+|.|-.+..+...+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~---~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLLNV-EI---EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHhCC-Cc---CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 1245789999999999999987753221 11 23566789999999997665555432 11110000000
Q ss_pred Cc-ccccccchhhhhhccCCChhHHHHhh-hhccCCCCCcccHHHHHHHHHHhCCccccCCCCcHHHHHHHHHH-HHHhC
Q 043855 418 LP-EERASFIPDLAISYRHLPPTLKQCFA-YCSLFPKGYEFEEKEIILLWSAVGFLDHVQSGNASEDLGRDIFR-ELCAR 494 (946)
Q Consensus 418 ~~-~~~~~~~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~l~-~L~~~ 494 (946)
.. +.-......+...|..++++.+..+. .++.++.+ .+..+.+.... + .....++..++ .|+++
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l-----------g-~~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL-----------G-EDADTIEDVYEPYLLQI 283 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh-----------C-CCcchHHHhhhHHHHHc
Confidence 00 00011222356678889988877666 55666543 45544443322 1 12345677778 69999
Q ss_pred cCCcccC
Q 043855 495 SFFQESG 501 (946)
Q Consensus 495 ~l~~~~~ 501 (946)
+|++...
T Consensus 284 ~li~~~~ 290 (305)
T TIGR00635 284 GFLQRTP 290 (305)
T ss_pred CCcccCC
Confidence 9997554
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.07 E-value=8.3e-09 Score=112.51 Aligned_cols=278 Identities=16% Similarity=0.127 Sum_probs=151.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+|+|+++.++.+..++..... .......+.|+|++|+||||||+.+++.. ...+ .++..+ .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEecc-cccChHHHHHHH
Confidence 4699999999999887754211 12345678899999999999999999843 2221 112211 112222233333
Q ss_pred HHhcCCCCCCcccH----HHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhHHHhh-C
Q 043855 264 RSFVADPNVDNRDL----ILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGVAAIM-G 338 (946)
Q Consensus 264 ~~l~~~~~~~~~~~----~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~~~~-~ 338 (946)
..+....-.-.++. ......+...+.+.+..+|+|+..+.. .+...++ +.+-|..||+...+...+ .
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecCC---CceEEeecCCcccCCHHHHH
Confidence 33321110000000 112233444455555556665543321 1111111 234566677754333221 1
Q ss_pred -CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhccCCChHHHHHHHhhhccc
Q 043855 339 -TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRGHHDKCDWEGVLRAKIWE 417 (946)
Q Consensus 339 -~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~ 417 (946)
-...++++++++++..+++.+.+..... . --++....|++.|+|.|-.+..+...+. .|...... ..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~-~---~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~--~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV-E---IDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD--GV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC-C---cCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC--CC
Confidence 1246899999999999999987654322 1 1235688999999999965554444321 22222110 01
Q ss_pred Cc-ccccccchhhhhhccCCChhHHHHhh-hhccCCCCCcccHHHHHHHHHHhCCccccCCCCcHHHHHHHHHH-HHHhC
Q 043855 418 LP-EERASFIPDLAISYRHLPPTLKQCFA-YCSLFPKGYEFEEKEIILLWSAVGFLDHVQSGNASEDLGRDIFR-ELCAR 494 (946)
Q Consensus 418 ~~-~~~~~~~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~l~-~L~~~ 494 (946)
.. ..-......+...|..|++..+..+. ....|+.+ .+..+.+.... . . ..+.+++.++ .|++.
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g--~----~~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G--E----ERDTIEDVYEPYLIQQ 304 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C--C----CcchHHHHhhHHHHHc
Confidence 11 00112334467778889888777775 66777655 46665554332 1 1 1234454555 89999
Q ss_pred cCCcccC
Q 043855 495 SFFQESG 501 (946)
Q Consensus 495 ~l~~~~~ 501 (946)
+|++...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9997654
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.06 E-value=8.9e-10 Score=114.78 Aligned_cols=194 Identities=19% Similarity=0.183 Sum_probs=100.0
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHH---
Q 043855 186 VYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVI--- 262 (946)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i--- 262 (946)
|+||++|+++|.+++... ..+.+.|+|+.|+|||+|++.+.+.. +..-...+|+...+.... .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhh-hHHHHHHHH
Confidence 689999999999998653 34789999999999999999999843 221113444444444322 222222
Q ss_pred -------HHHhcC---CCC------C----CcccHHHHHHHHHHHhCCceEEEEEcCCCCCC------hhhHhhhhccCC
Q 043855 263 -------LRSFVA---DPN------V----DNRDLILLQLQLKKQLSGKKFLFVLDDVWNES------YNDWVELSHPFE 316 (946)
Q Consensus 263 -------l~~l~~---~~~------~----~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------~~~w~~~~~~l~ 316 (946)
...+.. ... . .......+...+.+ .+++.+||+||+.... ..-...+...+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~ 149 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLD 149 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHh
Confidence 111111 000 0 11122222222222 2345999999995543 011112222221
Q ss_pred C--CCCCcEEEEEcCChhHHHh--------hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCC
Q 043855 317 A--GAPGSKIIVTTRNQGVAAI--------MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDG 386 (946)
Q Consensus 317 ~--~~~gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~G 386 (946)
. ......+|+++....+... .+....+.+++|+.+++++++...+-... .. +.-.+..++|+..+||
T Consensus 150 ~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~--~~-~~~~~~~~~i~~~~gG 226 (234)
T PF01637_consen 150 SLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELI--KL-PFSDEDIEEIYSLTGG 226 (234)
T ss_dssp H----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT
T ss_pred hccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhh--cc-cCCHHHHHHHHHHhCC
Confidence 1 1233345555555544433 12334599999999999999988653321 11 1224556899999999
Q ss_pred ChhHHHH
Q 043855 387 LPLAAKT 393 (946)
Q Consensus 387 lPLai~~ 393 (946)
+|..|..
T Consensus 227 ~P~~l~~ 233 (234)
T PF01637_consen 227 NPRYLQE 233 (234)
T ss_dssp -HHHHHH
T ss_pred CHHHHhc
Confidence 9998864
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.04 E-value=3.6e-11 Score=131.83 Aligned_cols=240 Identities=22% Similarity=0.158 Sum_probs=130.1
Q ss_pred cccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCcc-------CCccccCCCCCcEEeccCCCcc-
Q 043855 558 NLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFE-------LPDSIGELRHLRYLNLSRTLIE- 629 (946)
Q Consensus 558 ~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~-------lp~~i~~l~~Lr~L~Ls~~~i~- 629 (946)
.+..+.+|+.+.+.++.-... -...+...+...+.|+.|+++++.+.. ++..+.++.+|++|++++|.+.
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~--~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEE--AAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHhhccEEeecCCCCcHH--HHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 344566678887776541000 012234445577789999998886652 2345677889999999988876
Q ss_pred ccccchhcCCC---CcEEecCCCCch----hhchhhhccc-CccCeeecCCCCCcc-----ccccccCCCCCCcccCcee
Q 043855 630 VLPESVNKLYK---LQTLLLEDCDRL----KKLCASLGNL-INLHHLNNSNTDSLE-----EMPIGIGKLTSLQTLCSFV 696 (946)
Q Consensus 630 ~lp~~i~~L~~---L~~L~L~~~~~l----~~lp~~i~~L-~~L~~L~l~~~~~~~-----~~p~~i~~l~~L~~L~~~~ 696 (946)
..+..+..+.+ |++|++++|... ..++..+..+ ++|+.|++++|. +. .++..+..+++|++|++..
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcC
Confidence 34555555555 999999988432 1334456666 889999999887 33 2222344444555553322
Q ss_pred cCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCC
Q 043855 697 VGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHK 776 (946)
Q Consensus 697 ~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 776 (946)
+.... .....+...+..+++|+.|++++|.... .....+...+..++
T Consensus 175 n~l~~--------------------------~~~~~l~~~l~~~~~L~~L~L~~n~i~~-------~~~~~l~~~~~~~~ 221 (319)
T cd00116 175 NGIGD--------------------------AGIRALAEGLKANCNLEVLDLNNNGLTD-------EGASALAETLASLK 221 (319)
T ss_pred CCCch--------------------------HHHHHHHHHHHhCCCCCEEeccCCccCh-------HHHHHHHHHhcccC
Confidence 11000 0001111223334567777776654432 11122334455566
Q ss_pred CcceEEEeecCCCCC-----CcCcCCCCCCCccEEEEecCCCCC----CCC-CCCCCCCCceeeeccc
Q 043855 777 NLEQICISGYGGTEF-----PTWLGDFSFSNLVTLKFEDCGMCT----SLP-SVGQLPSLKHLVVRRM 834 (946)
Q Consensus 777 ~L~~L~l~~~~~~~~-----p~~~~~~~l~~L~~L~L~~~~~~~----~l~-~l~~l~~L~~L~L~~~ 834 (946)
+|+.|++++|.+... ...+.. ..++|++|++++|.+.+ .+. .+..+++|+.|++++|
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLS-PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhc-cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 777777777654421 111100 13566666666665431 111 2334456666666654
No 33
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.03 E-value=9.2e-09 Score=117.03 Aligned_cols=290 Identities=17% Similarity=0.190 Sum_probs=184.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCCC
Q 043855 194 KEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD-FDVVRLIKVILRSFVADPNV 272 (946)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~ 272 (946)
.+|++.|... ...+.+.|..|+|.|||||+.+.+. +.. .=..++|.+.++. .++......++..+..-.+.
T Consensus 25 ~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~ 96 (894)
T COG2909 25 PRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATPT 96 (894)
T ss_pred HHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCcc
Confidence 4566666443 3679999999999999999999975 111 1236899998765 57888888888888643332
Q ss_pred C------------cccHHHHHHHHHHHhC--CceEEEEEcCCCCCChhhHh-hhhccCCCCCCCcEEEEEcCChh---HH
Q 043855 273 D------------NRDLILLQLQLKKQLS--GKKFLFVLDDVWNESYNDWV-ELSHPFEAGAPGSKIIVTTRNQG---VA 334 (946)
Q Consensus 273 ~------------~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~w~-~~~~~l~~~~~gs~iivTtR~~~---v~ 334 (946)
. ..+...+...+...+. .++..+||||..-....... .+...+.....+-.+|||||+.. ++
T Consensus 97 ~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la 176 (894)
T COG2909 97 LGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLA 176 (894)
T ss_pred ccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCccc
Confidence 1 1223334444444333 46899999998654322222 23333444556788999999863 23
Q ss_pred HhhCCCCcEeC----CCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhccCCChHHHHHH
Q 043855 335 AIMGTVPAYQL----KKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRGHHDKCDWEGV 410 (946)
Q Consensus 335 ~~~~~~~~~~l----~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~~ 410 (946)
+..-....+++ =.++.+|+-++|...... +--+.-...+.+..+|-+-|+..++=.++.+.+.+.-...
T Consensus 177 ~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~ 249 (894)
T COG2909 177 RLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRG 249 (894)
T ss_pred ceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhh
Confidence 22112223333 258899999999876421 1123457789999999999999998888744333222221
Q ss_pred HhhhcccCcccccccch-hhhhhccCCChhHHHHhhhhccCCCCCcccHHHHHHHHHHhCCccccCCCCcHHHHHHHHHH
Q 043855 411 LRAKIWELPEERASFIP-DLAISYRHLPPTLKQCFAYCSLFPKGYEFEEKEIILLWSAVGFLDHVQSGNASEDLGRDIFR 489 (946)
Q Consensus 411 ~~~~~~~~~~~~~~~~~-~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~l~ 489 (946)
+. .....+.. ...--++.||+++|..++-||+++.- . ..|+..- +-++.|..+++
T Consensus 250 Ls-------G~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L-------------tg~~ng~amLe 305 (894)
T COG2909 250 LS-------GAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL-------------TGEENGQAMLE 305 (894)
T ss_pred cc-------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH-------------hcCCcHHHHHH
Confidence 11 00001111 12334688999999999999998532 1 1222221 22455778899
Q ss_pred HHHhCcCCc-ccCCCCCceEechhHHHHHHHhcc
Q 043855 490 ELCARSFFQ-ESGEDTSGFVMHDLVNGLAQWAGG 522 (946)
Q Consensus 490 ~L~~~~l~~-~~~~~~~~~~~Hdlv~~~a~~~~~ 522 (946)
+|.+++|+- +-++....|+.|.+..||.+..-.
T Consensus 306 ~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 306 ELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred HHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 999999884 445567899999999999865543
No 34
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.99 E-value=6.9e-09 Score=125.35 Aligned_cols=311 Identities=15% Similarity=0.170 Sum_probs=182.5
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEE---eCCC---CCHHHH
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTC---VSDD---FDVVRL 258 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---~~~~---~~~~~~ 258 (946)
.++||+.+.+.|...+.... .+...++.+.|..|||||+|++.|... +.+.+...+--. ...+ ....+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHH
Confidence 37899999999999987653 356679999999999999999999973 322211111111 1111 123344
Q ss_pred HHHHHHHhcCCCCC----------------------------------------CcccHH-----HHHHHHHHHh-CCce
Q 043855 259 IKVILRSFVADPNV----------------------------------------DNRDLI-----LLQLQLKKQL-SGKK 292 (946)
Q Consensus 259 ~~~il~~l~~~~~~----------------------------------------~~~~~~-----~~~~~l~~~l-~~kr 292 (946)
+++++.++...... .....+ ..+..+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 45555544222110 000000 1122233333 3569
Q ss_pred EEEEEcCCCCCChhhHhhhhccCCCCC----CCcEEEE--EcCCh--hHHHhhCCCCcEeCCCCChHHHHHHHHHhhcCC
Q 043855 293 FLFVLDDVWNESYNDWVELSHPFEAGA----PGSKIIV--TTRNQ--GVAAIMGTVPAYQLKKLSDHDCLALFARHSLGT 364 (946)
Q Consensus 293 ~LlVlDdv~~~~~~~w~~~~~~l~~~~----~gs~iiv--TtR~~--~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~ 364 (946)
.++|+||+...+....+-+........ ....|.. |.+.. .+-........+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 999999994433222222211111110 1112333 33322 111222345689999999999999998765332
Q ss_pred CCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhccC------CChHHHHHHHhhhcccCcccccccchhhhhhccCCCh
Q 043855 365 RDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRGH------HDKCDWEGVLRAKIWELPEERASFIPDLAISYRHLPP 438 (946)
Q Consensus 365 ~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~ 438 (946)
. +...+..+.|++|..|+|+.+..+-..+... .+...|..-..+ -......+.+...+..-.+.||.
T Consensus 236 ~-----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~--i~~~~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 236 K-----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS--LGILATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred c-----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh--cCCchhhHHHHHHHHHHHhcCCH
Confidence 2 2234678899999999999999998888764 233334322211 11111112255568889999999
Q ss_pred hHHHHhhhhccCCCCCcccHHHHHHHHHHhCCccccCCCCcHHHHHHHHHHHHHhCcCCcccC-----CCCC---ceEec
Q 043855 439 TLKQCFAYCSLFPKGYEFEEKEIILLWSAVGFLDHVQSGNASEDLGRDIFRELCARSFFQESG-----EDTS---GFVMH 510 (946)
Q Consensus 439 ~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~~~l~~~~~-----~~~~---~~~~H 510 (946)
..+......|++- -.|+.+.|...|- +...+++....+.|....++...+ .... +-..|
T Consensus 309 ~t~~Vl~~AA~iG--~~F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 309 TTREVLKAAACIG--NRFDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred HHHHHHHHHHHhC--ccCCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 9999999999994 5666777766651 245667777777777666664221 1112 23689
Q ss_pred hhHHHHHHHh
Q 043855 511 DLVNGLAQWA 520 (946)
Q Consensus 511 dlv~~~a~~~ 520 (946)
|.|++.|-..
T Consensus 376 ~~vqqaaY~~ 385 (849)
T COG3899 376 DRVQQAAYNL 385 (849)
T ss_pred HHHHHHHhcc
Confidence 9999987543
No 35
>PF05729 NACHT: NACHT domain
Probab=98.95 E-value=3.3e-09 Score=103.82 Aligned_cols=142 Identities=20% Similarity=0.251 Sum_probs=87.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcccccccc----CCceEEEEeCCCCCHH---HHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDH----FDLKAWTCVSDDFDVV---RLIKVILRSFVADPNVDNRDLILLQLQL 284 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~~l 284 (946)
+++.|+|.+|+||||+++.++........ +...+|+......... .+...+..+..... ..... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~---~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI----APIEE---LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch----hhhHH---HH
Confidence 47899999999999999999975432222 4566777776554332 23333333322111 11111 11
Q ss_pred HH-HhCCceEEEEEcCCCCCChh-------hHhhhhccC-CC-CCCCcEEEEEcCChhH---HHhhCCCCcEeCCCCChH
Q 043855 285 KK-QLSGKKFLFVLDDVWNESYN-------DWVELSHPF-EA-GAPGSKIIVTTRNQGV---AAIMGTVPAYQLKKLSDH 351 (946)
Q Consensus 285 ~~-~l~~kr~LlVlDdv~~~~~~-------~w~~~~~~l-~~-~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~ 351 (946)
.. .-+.++++||||++++.... .+..+...+ .. ..++++++||+|.... .........+.+.+|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 11 22578999999999654321 122222222 22 2468999999999766 334445568999999999
Q ss_pred HHHHHHHHh
Q 043855 352 DCLALFARH 360 (946)
Q Consensus 352 e~~~Lf~~~ 360 (946)
+..+++.+.
T Consensus 154 ~~~~~~~~~ 162 (166)
T PF05729_consen 154 DIKQYLRKY 162 (166)
T ss_pred HHHHHHHHH
Confidence 999999775
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.90 E-value=7.9e-08 Score=110.27 Aligned_cols=305 Identities=12% Similarity=0.065 Sum_probs=164.6
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc---cccCC--ceEEEEeCCCCCHHH
Q 043855 183 EAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRV---RDHFD--LKAWTCVSDDFDVVR 257 (946)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~~~~~~~~~ 257 (946)
+..+.|||+|+++|...|...-. +.+...++.|+|++|.|||+.++.|.....- +.... .+++|.+..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 35689999999999998865322 1233468899999999999999999864211 11111 357788777778889
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhC---CceEEEEEcCCCCCChhhHhhhhccCC-CCCCCcEEEE--EcCCh
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLS---GKKFLFVLDDVWNESYNDWVELSHPFE-AGAPGSKIIV--TTRNQ 331 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~~~~w~~~~~~l~-~~~~gs~iiv--TtR~~ 331 (946)
++..|..++....+............+...+. +...+||||+++......-+.+...+. ....+++|+| ++...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999999965443333333334444444442 234689999996432111111211111 1123555444 33322
Q ss_pred h--------HHHhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhccCC-
Q 043855 332 G--------VAAIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRGHH- 402 (946)
Q Consensus 332 ~--------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~- 402 (946)
+ +...++ ...+...|++.++..+++..++-.....-.+..++-+|+.++...|-.=.|+.++-.+...+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 2 112222 234677999999999999998764322223334555556555555556667766655443211
Q ss_pred ---ChHHHHHHHhhhcccCcccccccchhhhhhccCCChhHHHHhhhhccCCC---CCcccHHHHHHH--HHHhCCcccc
Q 043855 403 ---DKCDWEGVLRAKIWELPEERASFIPDLAISYRHLPPTLKQCFAYCSLFPK---GYEFEEKEIILL--WSAVGFLDHV 474 (946)
Q Consensus 403 ---~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~---~~~i~~~~li~~--Wiaeg~i~~~ 474 (946)
..++-..+.... ....+.-....||.|.|..+.-+...-+ ...++...+... =+++..-...
T Consensus 992 skVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~i 1061 (1164)
T PTZ00112 992 QKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYI 1061 (1164)
T ss_pred CccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhc
Confidence 111111111110 0111333456789887765543332211 223444443332 2233000000
Q ss_pred CCCCcHHHHHHHHHHHHHhCcCCccc
Q 043855 475 QSGNASEDLGRDIFRELCARSFFQES 500 (946)
Q Consensus 475 ~~~~~~e~~~~~~l~~L~~~~l~~~~ 500 (946)
......+ ....|+.+|...|+|-..
T Consensus 1062 Gv~plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1062 GMCSNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred CCCCcHH-HHHHHHHHHHhcCeEEec
Confidence 1112233 667788888888887654
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=2.1e-09 Score=103.26 Aligned_cols=129 Identities=27% Similarity=0.292 Sum_probs=53.4
Q ss_pred cccccceeeccCCCCCCCccchhHHhhhhhc-ccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccch-hc
Q 043855 560 YDIVCLRTFLPVNLPNSSRGLLAFRVLHQLL-RLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESV-NK 637 (946)
Q Consensus 560 ~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~-~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i-~~ 637 (946)
.+..++|.|.+.++. ......+. .+.+|++|+|++|.++.++ .+..+.+|++|++++|.|+.++..+ ..
T Consensus 16 ~n~~~~~~L~L~~n~--------I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQ--------ISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH
T ss_pred ccccccccccccccc--------cccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHh
Confidence 345567777776654 22244555 5788999999999998885 5888999999999999999887655 46
Q ss_pred CCCCcEEecCCCCchhhch--hhhcccCccCeeecCCCCCccccccc----cCCCCCCcccCceecCC
Q 043855 638 LYKLQTLLLEDCDRLKKLC--ASLGNLINLHHLNNSNTDSLEEMPIG----IGKLTSLQTLCSFVVGK 699 (946)
Q Consensus 638 L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~~~~~~~ 699 (946)
+++|++|++++| .+..+- ..+..+++|++|++.+|+ +...+.. +..+++|+.|+...+..
T Consensus 87 lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 87 LPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred CCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 899999999988 565542 246778899999999988 5554432 67788888887655543
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.85 E-value=1.8e-10 Score=119.64 Aligned_cols=83 Identities=22% Similarity=0.179 Sum_probs=49.1
Q ss_pred ceeEEEecCCCCc---cCCccccCCCCCcEEeccCCC-cc--ccccchhcCCCCcEEecCCCCchhhch--hhhcccCcc
Q 043855 594 RLRVFSLCGYEIF---ELPDSIGELRHLRYLNLSRTL-IE--VLPESVNKLYKLQTLLLEDCDRLKKLC--ASLGNLINL 665 (946)
Q Consensus 594 ~Lr~L~L~~~~~~---~lp~~i~~l~~Lr~L~Ls~~~-i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L 665 (946)
.|+.|.++|+.-. .+-..-.++++++.|++.++. ++ .+-..-..+++|++|++..|..++..- .....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5788888887322 232334566777777776654 22 112223457778888887776554432 123467778
Q ss_pred CeeecCCCCCc
Q 043855 666 HHLNNSNTDSL 676 (946)
Q Consensus 666 ~~L~l~~~~~~ 676 (946)
++|++++|..+
T Consensus 219 ~~lNlSwc~qi 229 (483)
T KOG4341|consen 219 KYLNLSWCPQI 229 (483)
T ss_pred HHhhhccCchh
Confidence 88888777633
No 39
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.85 E-value=2.6e-08 Score=104.11 Aligned_cols=174 Identities=24% Similarity=0.304 Sum_probs=107.6
Q ss_pred ccccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 181 VNEAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 181 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
+...+++|.+..+.+.++ .+.+....+||++|+||||||+.+.. .....| ..++-..+-.+-++
T Consensus 27 vGQ~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr 90 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLR 90 (436)
T ss_pred cChHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHH
Confidence 344566666665555443 24667788999999999999999998 444444 33333333233333
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEE--EcCChhH---HH
Q 043855 261 VILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIV--TTRNQGV---AA 335 (946)
Q Consensus 261 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iiv--TtR~~~v---~~ 335 (946)
++++... +....|++.+|++|.|..-+..+-+.+ ||...+|.-|+| ||-++.. ..
T Consensus 91 ~i~e~a~-----------------~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 91 EIIEEAR-----------------KNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred HHHHHHH-----------------HHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHH
Confidence 3333321 223348999999999987654444433 444456777766 7777632 22
Q ss_pred hhCCCCcEeCCCCChHHHHHHHHHhhcCCCCC-C-Cch-hHHHHHHHHHHhcCCChhH
Q 043855 336 IMGTVPAYQLKKLSDHDCLALFARHSLGTRDF-S-SHK-SLEKIGREIVTKCDGLPLA 390 (946)
Q Consensus 336 ~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~-~-~~~-~l~~~~~~i~~~~~GlPLa 390 (946)
......++.+++|+.++..+++.+.+...... . ... --+++...+++.++|---+
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 33467889999999999999998843322111 1 111 1234667788888886543
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.82 E-value=2.9e-09 Score=120.30 Aligned_cols=183 Identities=31% Similarity=0.362 Sum_probs=134.3
Q ss_pred hhcccCceeEEEecCCCCccCCccccCCC-CCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccC
Q 043855 588 QLLRLQRLRVFSLCGYEIFELPDSIGELR-HLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLH 666 (946)
Q Consensus 588 ~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~-~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 666 (946)
.+..++.+..|++.++.++.+|...+.+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 34466889999999999999999888885 999999999999999999999999999999999 8999999887999999
Q ss_pred eeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCce
Q 043855 667 HLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVL 746 (946)
Q Consensus 667 ~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 746 (946)
.|++++|. +..+|..++.+..|++|....+.. ...+. .+.++.++..|
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~--~~~~~-----------------------------~~~~~~~l~~l 237 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEELDLSNNSI--IELLS-----------------------------SLSNLKNLSGL 237 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhhhhcCCcc--eecch-----------------------------hhhhccccccc
Confidence 99999998 889998777777788885543310 00011 12222333333
Q ss_pred EEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC
Q 043855 747 LLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP 818 (946)
Q Consensus 747 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~ 818 (946)
.+..|.... ....+..+++|+.|++++|.+..++. +. .+.+|+.|+++++.....+|
T Consensus 238 ~l~~n~~~~------------~~~~~~~l~~l~~L~~s~n~i~~i~~-~~--~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 238 ELSNNKLED------------LPESIGNLSNLETLDLSNNQISSISS-LG--SLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccCCceeee------------ccchhccccccceecccccccccccc-cc--ccCccCEEeccCccccccch
Confidence 333322211 13445556678888888877777776 43 56788888888777665555
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=2.1e-10 Score=123.48 Aligned_cols=109 Identities=28% Similarity=0.432 Sum_probs=94.8
Q ss_pred HhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccC
Q 043855 584 RVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLI 663 (946)
Q Consensus 584 ~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 663 (946)
.++...+.|..|..|.|..|.+..+|..++++..|.||||+.|++..+|..++.|+ |+.|.+++| +++.+|..++.+.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~ 166 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLP 166 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccch
Confidence 45556667888888899999999999999999999999999999999999998876 899999988 8899999999889
Q ss_pred ccCeeecCCCCCccccccccCCCCCCcccCce
Q 043855 664 NLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSF 695 (946)
Q Consensus 664 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 695 (946)
.|.+|+.+.|. +..+|..++.+.+|+.|...
T Consensus 167 tl~~ld~s~ne-i~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 167 TLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred hHHHhhhhhhh-hhhchHHhhhHHHHHHHHHh
Confidence 99999999987 88889889998888888543
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.76 E-value=3.3e-10 Score=121.92 Aligned_cols=192 Identities=24% Similarity=0.228 Sum_probs=132.6
Q ss_pred CceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCC
Q 043855 593 QRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSN 672 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 672 (946)
.--...||+.|.+.++|..++.+..|..|.|..|.|..+|..+++|..|.+|||+.| .+..+|..+..|+ |+.|-+++
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEec
Confidence 334567899999999999999999999999999999999999999999999999998 8999999999886 99999998
Q ss_pred CCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecC
Q 043855 673 TDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTC 752 (946)
Q Consensus 673 ~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 752 (946)
|+ ++.+|..|+.+..|..|+...+... ....+++.| ..|+.|.++.|.
T Consensus 153 Nk-l~~lp~~ig~~~tl~~ld~s~nei~--slpsql~~l-----------------------------~slr~l~vrRn~ 200 (722)
T KOG0532|consen 153 NK-LTSLPEEIGLLPTLAHLDVSKNEIQ--SLPSQLGYL-----------------------------TSLRDLNVRRNH 200 (722)
T ss_pred Cc-cccCCcccccchhHHHhhhhhhhhh--hchHHhhhH-----------------------------HHHHHHHHhhhh
Confidence 87 9999999997777777754433221 112233333 344444444433
Q ss_pred CCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC----CCCCCCCCce
Q 043855 753 STDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP----SVGQLPSLKH 828 (946)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~----~l~~l~~L~~ 828 (946)
... +++.+. .-.|..|++++|++..+|-.+. .+..|++|.|.+|.+.. .| .-|...=.++
T Consensus 201 l~~------------lp~El~-~LpLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKy 264 (722)
T KOG0532|consen 201 LED------------LPEELC-SLPLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKY 264 (722)
T ss_pred hhh------------CCHHHh-CCceeeeecccCceeecchhhh--hhhhheeeeeccCCCCC-ChHHHHhccceeeeee
Confidence 222 223333 2236666666666666666665 56666666666666432 22 1233334455
Q ss_pred eeeccc
Q 043855 829 LVVRRM 834 (946)
Q Consensus 829 L~L~~~ 834 (946)
|+..-|
T Consensus 265 L~~qA~ 270 (722)
T KOG0532|consen 265 LSTQAC 270 (722)
T ss_pred ecchhc
Confidence 555544
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.69 E-value=1.9e-07 Score=104.96 Aligned_cols=178 Identities=19% Similarity=0.247 Sum_probs=106.0
Q ss_pred ccccchhHHHH---HHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHH
Q 043855 185 HVYGREIEKKE---IVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKV 261 (946)
Q Consensus 185 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 261 (946)
++||++..+.. +..++... ....+.|+|++|+||||||+.+++. ....| +.++......+-+++
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHHH
Confidence 57888776555 66666432 4457888999999999999999984 22222 222221111111222
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEE--EcCChhH---HHh
Q 043855 262 ILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIV--TTRNQGV---AAI 336 (946)
Q Consensus 262 il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iiv--TtR~~~v---~~~ 336 (946)
+++... .....+++.+|+||+++.......+.+...+.. |..+++ ||.+... ...
T Consensus 80 ii~~~~-----------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 80 VIEEAR-----------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHHHHH-----------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHH
Confidence 222211 011245788999999987765566666555432 444444 3444321 122
Q ss_pred hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhh
Q 043855 337 MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGG 396 (946)
Q Consensus 337 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 396 (946)
......+.+.++++++.+.++.+.+..... ...+-..+..+.|++.|+|.|..+..+..
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 234467999999999999999886532111 00012245677899999999876655443
No 44
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=6.3e-07 Score=97.08 Aligned_cols=180 Identities=19% Similarity=0.244 Sum_probs=120.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc----cccccCCceEEEE-eCCCCCHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDD----RVRDHFDLKAWTC-VSDDFDVVRL 258 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----~~~~~F~~~~wv~-~~~~~~~~~~ 258 (946)
.+++|-+..++.+.+++.... -.+...++|+.|+||||+|+.++..- ....|.|...|.. -+....+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 358899999999999985542 34677899999999999999998731 2345666656654 223333333
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhHH-H-h
Q 043855 259 IKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGVA-A-I 336 (946)
Q Consensus 259 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~-~-~ 336 (946)
.+++.+.+...+ ..+++-++|+|++...+...|..+...+.....++.+|++|.+.+.. . .
T Consensus 78 ir~~~~~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 IRNIIEEVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred HHHHHHHHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 233334332211 12566678888887777778999988888777788888888665321 1 1
Q ss_pred hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHH
Q 043855 337 MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTL 394 (946)
Q Consensus 337 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 394 (946)
......+.+.++++++....+.+...+ .. .+.++.++..++|.|.-+...
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYND-----IK---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 234568999999999998877654311 11 234667889999998766443
No 45
>PRK06893 DNA replication initiation factor; Validated
Probab=98.66 E-value=1.6e-07 Score=96.51 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=95.4
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSG 290 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 290 (946)
.+.+.|+|++|+|||+|++.+++. .......+.|+.+... .....+ +.+.++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~~----------------------~~~~~~- 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSPA----------------------VLENLE- 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhHH----------------------HHhhcc-
Confidence 357899999999999999999984 2222334566665321 000000 111122
Q ss_pred ceEEEEEcCCCCCC-hhhHhhh-hccCCCC-CCCcEEEE-EcCC---------hhHHHhhCCCCcEeCCCCChHHHHHHH
Q 043855 291 KKFLFVLDDVWNES-YNDWVEL-SHPFEAG-APGSKIIV-TTRN---------QGVAAIMGTVPAYQLKKLSDHDCLALF 357 (946)
Q Consensus 291 kr~LlVlDdv~~~~-~~~w~~~-~~~l~~~-~~gs~iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf 357 (946)
+.-+|||||+|... ...|... ...+... ..|..+|| |++. +++...+.....++++++++++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 23489999998642 2356532 2222211 23555554 4443 356666666678999999999999999
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhh
Q 043855 358 ARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLL 398 (946)
Q Consensus 358 ~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 398 (946)
.+.++...- . --+++..-|++.+.|..-++..+-..|
T Consensus 171 ~~~a~~~~l-~---l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRGI-E---LSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcCC-C---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 998874321 1 124667888999988776655544433
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=7.6e-09 Score=108.41 Aligned_cols=63 Identities=21% Similarity=0.166 Sum_probs=48.9
Q ss_pred cccCCCCCcEEeccCCCcccccc--chhcCCCCcEEecCCCCchh---hchhhhcccCccCeeecCCCC
Q 043855 611 SIGELRHLRYLNLSRTLIEVLPE--SVNKLYKLQTLLLEDCDRLK---KLCASLGNLINLHHLNNSNTD 674 (946)
Q Consensus 611 ~i~~l~~Lr~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~---~lp~~i~~L~~L~~L~l~~~~ 674 (946)
.=+++.+||...|.++.+...+. ....|++++.|||+.| .+. .+-..+..|++|+.|+++.|.
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc
Confidence 34678889999998888877664 6778999999999988 443 334456789999999999886
No 47
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.63 E-value=1.4e-08 Score=97.56 Aligned_cols=102 Identities=29% Similarity=0.390 Sum_probs=36.5
Q ss_pred cccCceeEEEecCCCCccCCcccc-CCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhh-cccCccCe
Q 043855 590 LRLQRLRVFSLCGYEIFELPDSIG-ELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASL-GNLINLHH 667 (946)
Q Consensus 590 ~~~~~Lr~L~L~~~~~~~lp~~i~-~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~ 667 (946)
.++..++.|+|+||.|..+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++| .+..++..+ ..+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCCE
Confidence 36667999999999998874 566 5899999999999999985 6888999999999999 788886655 46999999
Q ss_pred eecCCCCCcccccc--ccCCCCCCcccCce
Q 043855 668 LNNSNTDSLEEMPI--GIGKLTSLQTLCSF 695 (946)
Q Consensus 668 L~l~~~~~~~~~p~--~i~~l~~L~~L~~~ 695 (946)
|++++|. +..+.. .+..+++|+.|.+.
T Consensus 93 L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 93 LYLSNNK-ISDLNELEPLSSLPKLRVLSLE 121 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EEE-T
T ss_pred EECcCCc-CCChHHhHHHHcCCCcceeecc
Confidence 9999997 655432 24455666665443
No 48
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.9e-06 Score=95.08 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=110.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc-------------------CCce
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDH-------------------FDLK 244 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------F~~~ 244 (946)
.+++|.+..++.+.+.+.... -.+.+.++|+.|+||||+|+.++....-... +...
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 458999999999998886432 3467789999999999999999873211100 0111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH-hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcE
Q 043855 245 AWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQ-LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSK 323 (946)
Q Consensus 245 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~ 323 (946)
.++..+....+.+ ++++++. +... ..+++-++|+|++...+...++.+...+.......+
T Consensus 91 ~~~~~~~~~~v~~-ir~i~~~------------------~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 91 IEIDAASRTKVEE-MREILDN------------------IYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred EEecccccCCHHH-HHHHHHH------------------HhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 1221111111111 1112111 1110 124556999999987766667777776665555667
Q ss_pred EEEEcCCh-hHHHh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHH
Q 043855 324 IIVTTRNQ-GVAAI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKT 393 (946)
Q Consensus 324 iivTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 393 (946)
+|++|.+. .+... .+....+++.+++.++..+.+...+...+. . --++.++.|++.++|.|-.+..
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~---i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI-D---TDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 77766543 33322 234568999999999999888776543221 1 1235667899999998864433
No 49
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.58 E-value=8.7e-07 Score=90.79 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=102.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQL 288 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 288 (946)
+....+.+||++|.||||||+.+....+... ..+|..|-...-.+-.++|+++.... ..+
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~----------------~~l 219 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE----------------KSL 219 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH----------------Hhh
Confidence 4667888999999999999999998543333 45677776554444455665554221 235
Q ss_pred CCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEE--EcCChhH---HHhhCCCCcEeCCCCChHHHHHHHHHhhc-
Q 043855 289 SGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIV--TTRNQGV---AAIMGTVPAYQLKKLSDHDCLALFARHSL- 362 (946)
Q Consensus 289 ~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~- 362 (946)
.++|.+|++|.|..-+..+- -..+|...+|.-++| ||-++.. +..+....++.|++|+.++...++.+...
T Consensus 220 ~krkTilFiDEiHRFNksQQ---D~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQ---DTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhhh---hcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 67899999999965432222 234566667877666 7777643 23345678899999999999999887332
Q ss_pred -C-CCCC---CCch---hHHHHHHHHHHhcCCCh
Q 043855 363 -G-TRDF---SSHK---SLEKIGREIVTKCDGLP 388 (946)
Q Consensus 363 -~-~~~~---~~~~---~l~~~~~~i~~~~~GlP 388 (946)
+ .... -+++ -...+.+-++..|.|-.
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 1 1111 1111 12356677778888864
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.57 E-value=5.2e-08 Score=110.05 Aligned_cols=198 Identities=26% Similarity=0.302 Sum_probs=149.1
Q ss_pred eEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCC-CCcEEecCCCCchhhchhhhcccCccCeeecCCCC
Q 043855 596 RVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLY-KLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTD 674 (946)
Q Consensus 596 r~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 674 (946)
..|++..+.+..-+..+..+..+..|++.+|.+..+|.....+. +|+.|++++| .+..+|..++.+++|+.|++++|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence 46788888775555567777899999999999999999999885 9999999998 889998889999999999999998
Q ss_pred CccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCC
Q 043855 675 SLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCST 754 (946)
Q Consensus 675 ~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 754 (946)
+..+|...+.+++|+.|.+..+. +..+.. .......|++|.++.|...
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~------i~~l~~-------------------------~~~~~~~L~~l~~~~N~~~ 222 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNK------ISDLPP-------------------------EIELLSALEELDLSNNSII 222 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCc------cccCch-------------------------hhhhhhhhhhhhhcCCcce
Confidence 88998877788888887553321 111111 0122344777777776322
Q ss_pred CCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceeeeccc
Q 043855 755 DDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVRRM 834 (946)
Q Consensus 755 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~ 834 (946)
..+..+....++..|.+.++.+..+|..+. .+++|+.|++++|.+. .++.++.+.+|+.|+++++
T Consensus 223 ------------~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~--~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 223 ------------ELLSSLSNLKNLSGLELSNNKLEDLPESIG--NLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ------------ecchhhhhcccccccccCCceeeeccchhc--cccccceecccccccc-ccccccccCccCEEeccCc
Confidence 234455667778888888888777788776 6788999999998854 4555889999999999987
Q ss_pred cCceeeC
Q 043855 835 SRVKRLG 841 (946)
Q Consensus 835 ~~l~~~~ 841 (946)
......+
T Consensus 288 ~~~~~~~ 294 (394)
T COG4886 288 SLSNALP 294 (394)
T ss_pred cccccch
Confidence 5544433
No 51
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.8e-06 Score=101.22 Aligned_cols=183 Identities=16% Similarity=0.162 Sum_probs=114.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc-------------------CCce
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDH-------------------FDLK 244 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------F~~~ 244 (946)
.++||.+.-++.|.+++.... -.+.+.++|+.|+||||+|+.+++...-... |.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 458999999999999886542 2455689999999999999999974211100 1111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH-HHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcE
Q 043855 245 AWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLK-KQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSK 323 (946)
Q Consensus 245 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~ 323 (946)
+++.......+ .++.++...+. .-..+++-++|||++...+...+..++..+.......+
T Consensus 91 iEidAas~~kV-------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 91 IEVDAASRTKV-------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred EEeccccccCH-------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 22221111111 11222222221 11246778999999988877788888777765445666
Q ss_pred EEEEcCC-hhHHH-hhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHH
Q 043855 324 IIVTTRN-QGVAA-IMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTL 394 (946)
Q Consensus 324 iivTtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 394 (946)
+|++|.+ ..+.. .......|++++|+.++..+.+.+.+-.... ..-.+....|++.++|.|--+..+
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6665544 44432 2334578999999999999988876532211 112356788999999988544433
No 52
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.1e-06 Score=97.63 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=112.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc-------------------cCCce
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRD-------------------HFDLK 244 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~ 244 (946)
.++||.+..++.|.+++.... -.+.+.++|+.|+||||+|+.+++...-.. .|.-+
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 469999999999999996542 347889999999999999999987321100 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH-HHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcE
Q 043855 245 AWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLK-KQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSK 323 (946)
Q Consensus 245 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~ 323 (946)
+.+..+....+. +...+...+. .-..+++-++|+|++...+......+...+.....+.+
T Consensus 90 iEIDAAs~~~Vd-------------------dIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~ 150 (702)
T PRK14960 90 IEIDAASRTKVE-------------------DTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVK 150 (702)
T ss_pred EEecccccCCHH-------------------HHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcE
Confidence 222221111111 1111111111 11235667899999987776677777766655445667
Q ss_pred EEEEcCCh-hHH-HhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHH
Q 043855 324 IIVTTRNQ-GVA-AIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKT 393 (946)
Q Consensus 324 iivTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 393 (946)
+|++|.+. .+. ........+++++++.++..+.+.+.+-..+. .--.+....|++.++|.+-.+..
T Consensus 151 FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI----~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 151 FLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI----AADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred EEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 77776653 232 22345578999999999999888876543221 11235567899999998754443
No 53
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.9e-06 Score=97.72 Aligned_cols=180 Identities=16% Similarity=0.173 Sum_probs=113.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc------------------------c
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVR------------------------D 239 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------------~ 239 (946)
.++||-+.-++.|.+++.... -.+.+.++|+.|+||||+|+.+.+...-. +
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 469999999999999996542 34677899999999999999998632110 0
Q ss_pred cCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHhhhhccC
Q 043855 240 HFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQ----LSGKKFLFVLDDVWNESYNDWVELSHPF 315 (946)
Q Consensus 240 ~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~w~~~~~~l 315 (946)
.|.-.++++.... ...+++...+... ..++.-++|||++...+...++.++..+
T Consensus 91 ~hpDviEIdAas~----------------------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTL 148 (700)
T PRK12323 91 RFVDYIEMDAASN----------------------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTL 148 (700)
T ss_pred CCCcceEeccccc----------------------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhh
Confidence 0111122222211 1122222222211 2456679999999888777888887777
Q ss_pred CCCCCCcEEEE-EcCChhHHHh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHH
Q 043855 316 EAGAPGSKIIV-TTRNQGVAAI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKT 393 (946)
Q Consensus 316 ~~~~~gs~iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 393 (946)
..-...+++|+ ||....+... ...+..+.++.++.++..+.+.+.+-..+. .. ..+..+.|++.++|.|..+..
T Consensus 149 EEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi-~~---d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 149 EEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI-AH---EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred ccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 65445556555 5544444322 234578999999999999988876532211 11 124567899999999975544
Q ss_pred H
Q 043855 394 L 394 (946)
Q Consensus 394 ~ 394 (946)
+
T Consensus 225 L 225 (700)
T PRK12323 225 L 225 (700)
T ss_pred H
Confidence 4
No 54
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.51 E-value=1.7e-07 Score=87.43 Aligned_cols=118 Identities=17% Similarity=0.118 Sum_probs=78.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccccc---ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVR---DHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKK 286 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 286 (946)
+.+++.|+|.+|+|||++++.+.++.... ..-..++|+.++...+...+...|+.++..... ...+...+...+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-SRQTSDELRSLLID 81 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-STS-HHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-ccCCHHHHHHHHHH
Confidence 34789999999999999999999853210 002356799998888999999999999987765 33455666677777
Q ss_pred HhCCc-eEEEEEcCCCCC-ChhhHhhhhccCCCCCCCcEEEEEcCC
Q 043855 287 QLSGK-KFLFVLDDVWNE-SYNDWVELSHPFEAGAPGSKIIVTTRN 330 (946)
Q Consensus 287 ~l~~k-r~LlVlDdv~~~-~~~~w~~~~~~l~~~~~gs~iivTtR~ 330 (946)
.+... ..+||+|++... +...++.+..... ..+.+||+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77654 469999999665 4334444433332 456677776654
No 55
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=2.7e-06 Score=97.76 Aligned_cols=184 Identities=16% Similarity=0.177 Sum_probs=113.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc-------------------cCCce
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRD-------------------HFDLK 244 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~ 244 (946)
.++||.+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+...-.. .|.-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 458999999999999986432 345667999999999999998886321111 11112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEE
Q 043855 245 AWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKI 324 (946)
Q Consensus 245 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~i 324 (946)
++++.+....+.+ ++++++.... .-..++.-++|||++...+...|..++..+.......++
T Consensus 91 iEIDAas~rgVDd-IReLIe~a~~-----------------~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~F 152 (830)
T PRK07003 91 VEMDAASNRGVDE-MAALLERAVY-----------------APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152 (830)
T ss_pred EEecccccccHHH-HHHHHHHHHh-----------------ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEE
Confidence 2222222111111 1112111110 011345568899999888777788887776655567787
Q ss_pred EEEcCChh-HH-HhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCCh-hHHHHH
Q 043855 325 IVTTRNQG-VA-AIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLP-LAAKTL 394 (946)
Q Consensus 325 ivTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlP-Lai~~~ 394 (946)
|+||++.. +. ........+++++++.++..+.+.+.+-..+- . --.+....|++.++|.. -|+..+
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~---id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI-A---FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 77777643 32 22234578999999999999998876533211 1 12356778999999865 455443
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.50 E-value=2.5e-06 Score=94.19 Aligned_cols=199 Identities=14% Similarity=0.078 Sum_probs=107.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCC-ceEEEEeCCCCCH-HHHHH-
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFD-LKAWTCVSDDFDV-VRLIK- 260 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~-~~~~~- 260 (946)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+++... ...+. ..+.+++++-.+. ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 45889999999999988543 334678999999999999999987321 11111 1233443321100 00000
Q ss_pred --HHHHHhcCCCCCCcccHHHHHHHHHHH---h--CCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh-h
Q 043855 261 --VILRSFVADPNVDNRDLILLQLQLKKQ---L--SGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ-G 332 (946)
Q Consensus 261 --~il~~l~~~~~~~~~~~~~~~~~l~~~---l--~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~-~ 332 (946)
.....+...........+.....++.. . .+.+-+||+||+.......+..+...+......+++|+||... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000000001112222222221 1 2345589999997655444444544443333456787777543 2
Q ss_pred HHHh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHH
Q 043855 333 VAAI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKT 393 (946)
Q Consensus 333 v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 393 (946)
+... ......+.+.+++.++...++.+.+...+- . --.+..+.+++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-D---YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 2221 223457889999999999888876543221 1 1235677888889887655433
No 57
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.49 E-value=1.3e-06 Score=90.28 Aligned_cols=172 Identities=16% Similarity=0.146 Sum_probs=100.5
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 043855 189 REIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVA 268 (946)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 268 (946)
.+..++.+..++.. .....+.|+|++|+|||+||+.+++.. .......++++++.-.+. ..+
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~~---~~~------- 83 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQA---DPE------- 83 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHHh---HHH-------
Confidence 34566777776532 245788999999999999999999742 222334455555432110 001
Q ss_pred CCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChh-hHh-hhhccCCC-CCCCcEEEEEcCChh---------HHHh
Q 043855 269 DPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYN-DWV-ELSHPFEA-GAPGSKIIVTTRNQG---------VAAI 336 (946)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~w~-~~~~~l~~-~~~gs~iivTtR~~~---------v~~~ 336 (946)
+...+++ .-+|||||++..... .|. .+...+.. ...+.++|+||+... +...
T Consensus 84 ---------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 84 ---------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 1111222 238999999764322 332 23332221 123347888887532 2222
Q ss_pred hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhh
Q 043855 337 MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLL 398 (946)
Q Consensus 337 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 398 (946)
+.....+++.++++++...++...+-...- .. -++..+.|++.+.|.|..+..+...+
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~---~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRGL-QL---PDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 223457899999999999998875432211 11 23556778888999998777665443
No 58
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=7.3e-07 Score=101.37 Aligned_cols=198 Identities=18% Similarity=0.154 Sum_probs=114.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|-+..++.|..++.... -.+.+.++|++|+||||+|+.+++...-.+.+....|+|.+... +..-....+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 358999999999988886542 34667999999999999999998743211222222232221100 000000000
Q ss_pred HHhcCCCCCCcccHHHHHHHHHH-HhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCC-hhHHHhh-CCC
Q 043855 264 RSFVADPNVDNRDLILLQLQLKK-QLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRN-QGVAAIM-GTV 340 (946)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~-~~v~~~~-~~~ 340 (946)
..+.........+..++...+.. -..+++-++|||+++..+...+..+...+......+.+|++|.. ..+...+ ...
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 00000000011112222222221 12356679999999877767788887777655455565555543 3332222 345
Q ss_pred CcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHH
Q 043855 341 PAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAA 391 (946)
Q Consensus 341 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 391 (946)
..+++.++++++..+.+.+.+-..+- . --++....|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi-~---i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGR-E---AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHH
Confidence 68999999999999999887643321 1 12356788999999988544
No 59
>PRK04195 replication factor C large subunit; Provisional
Probab=98.49 E-value=1.1e-05 Score=92.60 Aligned_cols=247 Identities=15% Similarity=0.134 Sum_probs=137.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|.++.++.+.+|+..... ....+.+.|+|++|+||||+|+.+++... |+ .+-++.++..+. ..+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHHHH
Confidence 4599999999999999865431 12367899999999999999999998532 22 233344432222 2233333
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh----hhHhhhhccCCCCCCCcEEEEEcCCh-hHH--Hh
Q 043855 264 RSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY----NDWVELSHPFEAGAPGSKIIVTTRNQ-GVA--AI 336 (946)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~w~~~~~~l~~~~~gs~iivTtR~~-~v~--~~ 336 (946)
........ ....++-+||||+++.... ..+..+...+.. .+..||+|+.+. ... ..
T Consensus 86 ~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 86 GEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 32211110 1113678999999976432 234445444432 234466666442 221 11
Q ss_pred hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhccC---CChHHHHHHHhh
Q 043855 337 MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRGH---HDKCDWEGVLRA 413 (946)
Q Consensus 337 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~---~~~~~w~~~~~~ 413 (946)
......+.+.+++.++....+.+.+...+. ... .++...|++.++|..-.+......+... -+.+.-..+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGI-ECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 223467899999999999888876643222 122 3567889999999776555443333332 12222222221
Q ss_pred hcccCcccccccchhhhhhcc-CCChhHHHHhhhhccCCCCCcccHHHHHHHHHHhCCccc
Q 043855 414 KIWELPEERASFIPDLAISYR-HLPPTLKQCFAYCSLFPKGYEFEEKEIILLWSAVGFLDH 473 (946)
Q Consensus 414 ~~~~~~~~~~~~~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~ 473 (946)
.....+++.++..-+. .-+......+.. ..++.+ .+-.|+.|.+...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~~-~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYD-------VDEDPD-DLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCHH-HHHHHHHhccccc
Confidence 1112345555554443 222233332221 223333 4678999999764
No 60
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=4.6e-06 Score=95.01 Aligned_cols=184 Identities=20% Similarity=0.148 Sum_probs=113.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc----c---------------ccCCce
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRV----R---------------DHFDLK 244 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~---------------~~F~~~ 244 (946)
.+++|.+..++.|...+.... -.+.+.++|+.|+||||+|+.+++...- . +.|.-.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 458999999999999886432 3466789999999999999999862110 0 012222
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH-HhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcE
Q 043855 245 AWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKK-QLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSK 323 (946)
Q Consensus 245 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~ 323 (946)
+++.......+.+ ...+...+.. -..+++-++|+|++...+...++.+...+......+.
T Consensus 91 ieidaas~~gvd~-------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 91 IEIDAASRTGVEE-------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred EEeecccccCHHH-------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 3332222222221 2222222221 1235667999999987776677778777766545566
Q ss_pred EEE-EcCChhHH-HhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChh-HHHHHh
Q 043855 324 IIV-TTRNQGVA-AIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPL-AAKTLG 395 (946)
Q Consensus 324 iiv-TtR~~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~~ 395 (946)
+|+ ||....+. ........+++++++.++....+.+.+-..+- ..-++....|++.++|.+- |+..+-
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi----~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI----NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 554 55444443 22334678999999999988877765432111 1123556789999999764 444443
No 61
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=2.3e-08 Score=99.41 Aligned_cols=98 Identities=29% Similarity=0.305 Sum_probs=46.1
Q ss_pred ccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeec
Q 043855 591 RLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNN 670 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 670 (946)
..+.|..|||++|.|+.+.+++.-++.+|.|++|+|.|..+-. +..|++|+.|||++| .+.++-..-.+|-|.+.|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 3444555555555555555555555555555555555544422 445555555555554 34333322334444455555
Q ss_pred CCCCCccccccccCCCCCCccc
Q 043855 671 SNTDSLEEMPIGIGKLTSLQTL 692 (946)
Q Consensus 671 ~~~~~~~~~p~~i~~l~~L~~L 692 (946)
++|. +..+ .++++|-+|..|
T Consensus 360 a~N~-iE~L-SGL~KLYSLvnL 379 (490)
T KOG1259|consen 360 AQNK-IETL-SGLRKLYSLVNL 379 (490)
T ss_pred hhhh-Hhhh-hhhHhhhhheec
Confidence 5543 3332 234444444444
No 62
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=5.4e-08 Score=96.77 Aligned_cols=129 Identities=24% Similarity=0.225 Sum_probs=103.8
Q ss_pred cccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhc
Q 043855 558 NLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNK 637 (946)
Q Consensus 558 ~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~ 637 (946)
.+..+..|..+.+.++. ...+-.++--.+.+|+|++++|.+..+.. +..|.+|..||||+|.+.++-..-.+
T Consensus 279 ~~dTWq~LtelDLS~N~-------I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~K 350 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNL-------ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLK 350 (490)
T ss_pred ecchHhhhhhccccccc-------hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhh
Confidence 34456677777777653 12233334457889999999999988754 89999999999999999988777889
Q ss_pred CCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccc--cccCCCCCCcccCceec
Q 043855 638 LYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMP--IGIGKLTSLQTLCSFVV 697 (946)
Q Consensus 638 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~~~~~ 697 (946)
|-|.++|.|++| .++.+ +++.+|.+|..||+++|+ +..+. .+||+|+.|++|.+.++
T Consensus 351 LGNIKtL~La~N-~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 351 LGNIKTLKLAQN-KIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hcCEeeeehhhh-hHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCC
Confidence 999999999998 78877 679999999999999998 76664 46999999999866544
No 63
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=8.2e-06 Score=92.40 Aligned_cols=192 Identities=20% Similarity=0.207 Sum_probs=112.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCc-eEEEEeCCCCCHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDL-KAWTCVSDDFDVVRLIKVI 262 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i 262 (946)
.+++|-+.-++.|...+.... -.+.+.++|+.|+||||+|+.+++...-...... ..+..+... ..-..+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 358999999998888775432 3467889999999999999999873211100000 000000000 000000
Q ss_pred HH-------HhcCCCCCCcccHHHHHHHHHH----HhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEE-EcCC
Q 043855 263 LR-------SFVADPNVDNRDLILLQLQLKK----QLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIV-TTRN 330 (946)
Q Consensus 263 l~-------~l~~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iiv-TtR~ 330 (946)
.. .+... .....+++...+.. -..+++-++|+|+++..+...|..+...+......+.+|+ ||+.
T Consensus 92 ~~~~h~Dv~eidaa---s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~ 168 (507)
T PRK06645 92 NNHNHPDIIEIDAA---SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEV 168 (507)
T ss_pred hcCCCCcEEEeecc---CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCCh
Confidence 00 00000 11112222222211 1245677999999998777788888777765555666554 5555
Q ss_pred hhHHHhh-CCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHH
Q 043855 331 QGVAAIM-GTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAA 391 (946)
Q Consensus 331 ~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 391 (946)
..+...+ .....+++.+++.++..+.+.+.+-..+. . --.+....|++.++|.+--+
T Consensus 169 ~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi-~---ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 169 QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL-K---TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHH
Confidence 5554433 34567999999999999999887653221 1 11345677999999987544
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.42 E-value=3.3e-08 Score=101.00 Aligned_cols=90 Identities=26% Similarity=0.271 Sum_probs=62.6
Q ss_pred hhhhhcccCceeEEEecCCCCc-----cCCccccCCCCCcEEeccCCC----ccccccc-------hhcCCCCcEEecCC
Q 043855 585 VLHQLLRLQRLRVFSLCGYEIF-----ELPDSIGELRHLRYLNLSRTL----IEVLPES-------VNKLYKLQTLLLED 648 (946)
Q Consensus 585 ~~~~l~~~~~Lr~L~L~~~~~~-----~lp~~i~~l~~Lr~L~Ls~~~----i~~lp~~-------i~~L~~L~~L~L~~ 648 (946)
+.+.+-.+..+..++|+||.+. .+-+.+.+.++||.-++|+-- ..++|+. +-.+++|++||||.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 3444557889999999999775 245667788899999998631 2255554 34567888888888
Q ss_pred CCch----hhchhhhcccCccCeeecCCCC
Q 043855 649 CDRL----KKLCASLGNLINLHHLNNSNTD 674 (946)
Q Consensus 649 ~~~l----~~lp~~i~~L~~L~~L~l~~~~ 674 (946)
|-.- ..+-.-+..+.+|++|++.+|.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 8332 2233346677888888888876
No 65
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.41 E-value=6.2e-07 Score=89.46 Aligned_cols=49 Identities=29% Similarity=0.369 Sum_probs=33.1
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDR 236 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (946)
.||||+++.+++...|... ..+..+++.|+|++|+|||+|.+.++....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3899999999999999522 235679999999999999999999998433
No 66
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=9.4e-08 Score=100.42 Aligned_cols=131 Identities=21% Similarity=0.159 Sum_probs=74.8
Q ss_pred ccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCcc--ccCCCCCcEEeccCCCcc--ccccc
Q 043855 559 LYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDS--IGELRHLRYLNLSRTLIE--VLPES 634 (946)
Q Consensus 559 ~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~--i~~l~~Lr~L~Ls~~~i~--~lp~~ 634 (946)
...|+++|.|.+..+-.+.+ ..+.+-...+++|+.|+|+.|.+....++ -..+.||+.|.|+.|.++ .+-..
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw----~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~ 217 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNW----FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWI 217 (505)
T ss_pred hhhCCcceeecchhhhHHhH----HHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHH
Confidence 44677777777765431111 22222223778888888887765432221 135677778888877776 23333
Q ss_pred hhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCcccccc--ccCCCCCCcccCc
Q 043855 635 VNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPI--GIGKLTSLQTLCS 694 (946)
Q Consensus 635 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~ 694 (946)
...+|+|+.|+|.+|..+..--.....+..|+.|+|++|+ +..++. .++.++.|..|.+
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhc
Confidence 4467778888887774222111223445677777887776 445552 2556666665543
No 67
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=7.1e-06 Score=90.86 Aligned_cols=197 Identities=16% Similarity=0.087 Sum_probs=113.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|-+..+..|..++.... -.+.+.++|+.|+||||+|+.+++...-. .... ...+.....-..+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccCC
Confidence 458999999999999886542 23568899999999999999998732111 0000 000000001111111000
Q ss_pred HH---hcCCCCCCcccHHHHHHHHHHH-hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEE-EcCChhHH-Hhh
Q 043855 264 RS---FVADPNVDNRDLILLQLQLKKQ-LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIV-TTRNQGVA-AIM 337 (946)
Q Consensus 264 ~~---l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iiv-TtR~~~v~-~~~ 337 (946)
.. +.........+..++...+... ..++.-++|+|++...+...+..+...+........+|+ ||....+. ...
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 00 0000000112223333333221 245667999999988887788888777754434455554 44444443 223
Q ss_pred CCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHH
Q 043855 338 GTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAK 392 (946)
Q Consensus 338 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 392 (946)
.....|.+.+++.++..+.+.+.+-..+. . --.+....|++.++|.+--+.
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi-~---~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENV-Q---YDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCChHHHHH
Confidence 34567999999999999888876543221 1 123567889999999985443
No 68
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.39 E-value=4.7e-07 Score=92.96 Aligned_cols=92 Identities=20% Similarity=0.134 Sum_probs=63.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCcc-----cHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD--FDVVRLIKVILRSFVADPNVDNR-----DLILLQL 282 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~-----~~~~~~~ 282 (946)
....+.|+|++|+|||||++.++++.... +|+..+|+++... +++.++++.+...+.......+. -......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999975444 8999999997776 78999999984333222211111 1111222
Q ss_pred HHHHH-hCCceEEEEEcCCCC
Q 043855 283 QLKKQ-LSGKKFLFVLDDVWN 302 (946)
Q Consensus 283 ~l~~~-l~~kr~LlVlDdv~~ 302 (946)
..... -.+++.++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 22222 358999999999943
No 69
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.1e-05 Score=85.78 Aligned_cols=206 Identities=16% Similarity=0.129 Sum_probs=128.3
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCC--ceEEEEeCCCCCHHHHHHHHH
Q 043855 186 VYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFD--LKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~il 263 (946)
+.+|+++++++...|...-. +..+.-+.|+|.+|.|||+.++.|... ++.... ..+.|++-...+..+++.+|+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 19 LPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 88999999999988865432 233344899999999999999999983 333321 168999999999999999999
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHhC--CceEEEEEcCCCCCChhhHhhhhccCCCCC-CCcEE--EEEcCChhHHHhhC
Q 043855 264 RSFVADPNVDNRDLILLQLQLKKQLS--GKKFLFVLDDVWNESYNDWVELSHPFEAGA-PGSKI--IVTTRNQGVAAIMG 338 (946)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~-~gs~i--ivTtR~~~v~~~~~ 338 (946)
.+++..+. ......+....+.+.+. ++.+++|||++.......-+.+...+.... ..++| |..+-+......+.
T Consensus 95 ~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 95 NKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99984444 44555566666666664 578999999995432111012222222111 24443 33444443333222
Q ss_pred -------CCCcEeCCCCChHHHHHHHHHhhcCCCCC-CCchh-HHHHHHHHHHhcCCChhHHHHHhh
Q 043855 339 -------TVPAYQLKKLSDHDCLALFARHSLGTRDF-SSHKS-LEKIGREIVTKCDGLPLAAKTLGG 396 (946)
Q Consensus 339 -------~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~-~~~~~-l~~~~~~i~~~~~GlPLai~~~~~ 396 (946)
....+...|-+.+|-.+++..++-..... ...+. ++-++...++..|--=.||..+-.
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 12337889999999999998876432221 22333 334444444444444455555533
No 70
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.38 E-value=2.3e-06 Score=81.70 Aligned_cols=124 Identities=19% Similarity=0.142 Sum_probs=72.2
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 043855 187 YGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSF 266 (946)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 266 (946)
+|++..+..+...+... ..+.+.|+|++|+||||+|+.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888888988888543 346889999999999999999998532 112345666665543322211111000
Q ss_pred cCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh---hhHhhhhccCCCC---CCCcEEEEEcCCh
Q 043855 267 VADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY---NDWVELSHPFEAG---APGSKIIVTTRNQ 331 (946)
Q Consensus 267 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---~~w~~~~~~l~~~---~~gs~iivTtR~~ 331 (946)
............++.++|+||++.... ..+......+... ..+..||+||...
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 001111222345678999999985421 2233333333221 3577888888765
No 71
>PLN03025 replication factor C subunit; Provisional
Probab=98.38 E-value=7.4e-06 Score=88.96 Aligned_cols=182 Identities=15% Similarity=0.160 Sum_probs=105.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCC-ceEEEEeCCCCCHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFD-LKAWTCVSDDFDVVRLIKVI 262 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 262 (946)
.+++|.++.++.|..++... ..+.+.++|++|+||||+|+.+++.. ....|. .++-+..++..+.. .++++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccHH-HHHHH
Confidence 45889988888888877533 33457799999999999999998742 111221 11112222222221 22222
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh-hHHH-hhCCC
Q 043855 263 LRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ-GVAA-IMGTV 340 (946)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~-~v~~-~~~~~ 340 (946)
+..+..... ..-.++.-++|||+++..+......+...+......+++|+++... .+.. .....
T Consensus 85 i~~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 85 IKMFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 222111000 0002456799999998776555555555444334556777766442 2211 11234
Q ss_pred CcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHH
Q 043855 341 PAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAA 391 (946)
Q Consensus 341 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 391 (946)
..++++++++++....+...+-..+- ... .+....|++.++|..-.+
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi-~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKV-PYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHH
Confidence 57999999999999988876643221 111 355778899999876433
No 72
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=7.5e-07 Score=82.42 Aligned_cols=119 Identities=22% Similarity=0.218 Sum_probs=78.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGK 291 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 291 (946)
+++.|.|+.|+|||||+++++.+.. ....+++++..+....... ..+ +...+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------hhh-hHHHHHHhhccC
Confidence 6899999999999999999997533 2344666666553221100 000 222333334447
Q ss_pred eEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhHHHh------hCCCCcEeCCCCChHHH
Q 043855 292 KFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGVAAI------MGTVPAYQLKKLSDHDC 353 (946)
Q Consensus 292 r~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~e~ 353 (946)
+.+++||++... .+|......+.+..+..+|++|+........ .+....+++.||+-.|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 888999999665 4787777766665567899999998766532 12334688999987764
No 73
>PLN03150 hypothetical protein; Provisional
Probab=98.37 E-value=4.7e-07 Score=107.10 Aligned_cols=92 Identities=27% Similarity=0.348 Sum_probs=81.9
Q ss_pred ceeEEEecCCCCc-cCCccccCCCCCcEEeccCCCcc-ccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecC
Q 043855 594 RLRVFSLCGYEIF-ELPDSIGELRHLRYLNLSRTLIE-VLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNS 671 (946)
Q Consensus 594 ~Lr~L~L~~~~~~-~lp~~i~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 671 (946)
.++.|+|++|.+. .+|..+++|.+|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999887 68889999999999999999987 789999999999999999996667899999999999999999
Q ss_pred CCCCccccccccCC
Q 043855 672 NTDSLEEMPIGIGK 685 (946)
Q Consensus 672 ~~~~~~~~p~~i~~ 685 (946)
+|...+.+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99866788887765
No 74
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=6.8e-06 Score=94.53 Aligned_cols=183 Identities=15% Similarity=0.153 Sum_probs=109.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc-------------------CCce
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDH-------------------FDLK 244 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------F~~~ 244 (946)
.++||.+..++.|.+++.... -.+.+.++|+.|+||||+|+.+.....-... |.-.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 469999999999999986542 3467899999999999999999863111100 1011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH-HhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcE
Q 043855 245 AWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKK-QLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSK 323 (946)
Q Consensus 245 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~ 323 (946)
+.+.......+. ++.++...... -..+++-++|||++...+......+...+......++
T Consensus 91 lEidaAs~~gVd-------------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 91 LEIDAASNTGID-------------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred EEEeccccCCHH-------------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 122222111111 11111111110 1235667899999977665556666666544334566
Q ss_pred EEEEcCCh-hHH-HhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHH
Q 043855 324 IIVTTRNQ-GVA-AIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTL 394 (946)
Q Consensus 324 iivTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 394 (946)
+|++|.+. .+. ...+....+.+.+++.++....+.+.+-..+. . --.+....|++.++|.+--+..+
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~---id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-A---YEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-C---cCHHHHHHHHHHhCCCHHHHHHH
Confidence 66666543 222 12234457889999999999988876543221 1 12356788999999988544443
No 75
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=4e-07 Score=71.70 Aligned_cols=57 Identities=28% Similarity=0.443 Sum_probs=39.2
Q ss_pred CceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCC
Q 043855 593 QRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDC 649 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~ 649 (946)
++|++|++++|.+..+| ..|.++++|++|++++|.++.+|. .|..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35677777777777766 356677777777777777776643 5667777777777766
No 76
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.35 E-value=2e-05 Score=87.59 Aligned_cols=184 Identities=18% Similarity=0.179 Sum_probs=111.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc--c------------------ccCCc
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRV--R------------------DHFDL 243 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~------------------~~F~~ 243 (946)
.+++|.+..++.+.+++.... -.+.+.++|++|+||||+|+.+.....- . .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 458999999999999886432 3467889999999999999888763110 0 12221
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcE
Q 043855 244 KAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSK 323 (946)
Q Consensus 244 ~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~ 323 (946)
+++..+...... ..++++..+...+ ..+++-++|+|++...+......+...+......+.
T Consensus 89 -~~~~~~~~~~~~-~~~~l~~~~~~~p-----------------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGVD-DIREILDNVKYAP-----------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCHH-HHHHHHHHHhcCc-----------------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 233222111111 1222222221110 224556889999976655556666666654445566
Q ss_pred EEEEcCChh-HHH-hhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 324 IIVTTRNQG-VAA-IMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 324 iivTtR~~~-v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
+|++|.+.. +.. .......+++.++++++..+.+...+-..+. .. -++.+..+++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i---~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KI---EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCChHHHHHHH
Confidence 666665543 222 2233467899999999998888876543221 11 13667889999999987665443
No 77
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.35 E-value=1.4e-05 Score=87.49 Aligned_cols=181 Identities=14% Similarity=0.141 Sum_probs=105.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEe--CCCCCHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCV--SDDFDVVRLIKV 261 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~ 261 (946)
.+++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+. ..++.. +...... ..++
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHHH
Confidence 45889999999999998543 334579999999999999999987421 11121 112222 2221111 1112
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh-hHHH-hhCC
Q 043855 262 ILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ-GVAA-IMGT 339 (946)
Q Consensus 262 il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~-~v~~-~~~~ 339 (946)
.+.++....+ .....+-++++|++.......+..+...+......+++|+++... .+.. ....
T Consensus 88 ~i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 88 KIKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 2221111100 011345689999987655444555555554444456777766432 2211 1123
Q ss_pred CCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHH
Q 043855 340 VPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAK 392 (946)
Q Consensus 340 ~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 392 (946)
...+++.++++++....+...+...+- .. -++....+++.++|.+--+.
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~-~i---~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGI-EI---TDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHH
Confidence 346899999999998888876643221 11 23567788999999876543
No 78
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.34 E-value=1.2e-05 Score=94.37 Aligned_cols=203 Identities=19% Similarity=0.172 Sum_probs=119.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccC---CceEEEEeCC---CCCHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF---DLKAWTCVSD---DFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~---~~~~~~ 257 (946)
++++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.......+ ...-|+.+.. ..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 35899999999888877432 34579999999999999999998754332222 1233554432 122222
Q ss_pred HHHHH---------------HHHhcCCCC-----------------CCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh
Q 043855 258 LIKVI---------------LRSFVADPN-----------------VDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY 305 (946)
Q Consensus 258 ~~~~i---------------l~~l~~~~~-----------------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~ 305 (946)
+...+ +...+.... ....+ ...+..+.+.++.+++.++-|+.|..+.
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 21111 111111000 01111 2356778888889999999888877666
Q ss_pred hhHhhhhccCCCCCCCcEEEE--EcCChhH-HH-hhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHH
Q 043855 306 NDWVELSHPFEAGAPGSKIIV--TTRNQGV-AA-IMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIV 381 (946)
Q Consensus 306 ~~w~~~~~~l~~~~~gs~iiv--TtR~~~v-~~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~ 381 (946)
..|..+...+....+...|++ ||++... .. .......+.+.+++.+|.++++.+.+-.... ... .++.+.|.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls---~eal~~L~ 382 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLA---AGVEELIA 382 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHH
Confidence 678777766665555555555 5665431 11 1123346789999999999999986542211 111 24445555
Q ss_pred HhcCCChhHHHHHhhh
Q 043855 382 TKCDGLPLAAKTLGGL 397 (946)
Q Consensus 382 ~~~~GlPLai~~~~~~ 397 (946)
+.+..-+-|+..++..
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 5554445566555443
No 79
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=1.6e-05 Score=86.74 Aligned_cols=195 Identities=13% Similarity=0.083 Sum_probs=112.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceE------EEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKA------WTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~------wv~~~~~~~~~~ 257 (946)
.+++|.++.++.|.+.+.... -...+.++|+.|+||+|+|..+....--........ =..+.... .
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~ 90 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---P 90 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---h
Confidence 468999999999999886542 346788999999999999988876311000000000 00000000 0
Q ss_pred HHHHHHHHh-------cCC--CC----CCcccHHHHHHHHHHHh-----CCceEEEEEcCCCCCChhhHhhhhccCCCCC
Q 043855 258 LIKVILRSF-------VAD--PN----VDNRDLILLQLQLKKQL-----SGKKFLFVLDDVWNESYNDWVELSHPFEAGA 319 (946)
Q Consensus 258 ~~~~il~~l-------~~~--~~----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~ 319 (946)
.-+.+...- ... .. ...-.++++. .+.+.+ .+++-++|+||+...+......+...+....
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 111110000 000 00 0111233322 233333 2456799999998877777777777666544
Q ss_pred CCcEEEEEcCCh-hHHHh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 320 PGSKIIVTTRNQ-GVAAI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 320 ~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
.++.+|++|.+. .+... ......+.+.+++.++..+++...... .. .+....+++.++|.|..+..+.
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 566677766654 33222 234578999999999999999875311 11 1222678999999998776554
No 80
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.4e-05 Score=92.35 Aligned_cols=195 Identities=16% Similarity=0.188 Sum_probs=111.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc--CCceEEEEeCCCCCHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDH--FDLKAWTCVSDDFDVVRLIKV 261 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~ 261 (946)
.++||-+.-++.|.+++.... -.+.+.++|+.|+||||+|+.+.....-... .....+ ..++.-..-+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 458998888889999886542 3467789999999999999999652110000 000000 00000011111
Q ss_pred HHH-------HhcCCCCCCcccHHHHHHHHHH----HhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEc-C
Q 043855 262 ILR-------SFVADPNVDNRDLILLQLQLKK----QLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTT-R 329 (946)
Q Consensus 262 il~-------~l~~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTt-R 329 (946)
|.. .+... .....+++...+.. -..++.-++|||+++..+...+..+...+.......++|++| .
T Consensus 87 i~~g~h~D~~eldaa---s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 87 IDSGRFVDYTELDAA---SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred HHcCCCCceeecCcc---cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 100 00000 11112222222211 012445589999999888778888877776554556666555 4
Q ss_pred ChhHH-HhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHH
Q 043855 330 NQGVA-AIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTL 394 (946)
Q Consensus 330 ~~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 394 (946)
...+. ........++++++++++..+.+.+.+-..+. . --.+....|++.++|.+--+..+
T Consensus 164 ~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-~---ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 164 PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-P---AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 34433 23345678999999999999888876543221 1 12356778889999977554443
No 81
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=8.5e-06 Score=94.26 Aligned_cols=196 Identities=17% Similarity=0.154 Sum_probs=113.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.++||-+..++.|.+.+.... -.+.+.++|+.|+||||+|+.+++...-...+. ...+..-..-+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 458999999999998886532 235578999999999999999987321100000 00111111111111
Q ss_pred HH-------hcCCCCCCcccHHHHHHHHHH-HhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCC-hhHH
Q 043855 264 RS-------FVADPNVDNRDLILLQLQLKK-QLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRN-QGVA 334 (946)
Q Consensus 264 ~~-------l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~-~~v~ 334 (946)
.. +.........+..++...+.. -..+++-++|||++...+....+.+...+.......++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 000000011122222222221 13466779999999888777777777766654455565554444 4443
Q ss_pred H-hhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 335 A-IMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 335 ~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
. .......+.+++++.++..+.+.+.+-..+. ..-.+....|++.++|.+--+..+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 2334678999999999999988875532111 1123456789999999886554443
No 82
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.3e-05 Score=89.98 Aligned_cols=182 Identities=19% Similarity=0.195 Sum_probs=114.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc------cc-------------cccCCce
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDD------RV-------------RDHFDLK 244 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~------~~-------------~~~F~~~ 244 (946)
.++||.+..++.|.+.+.... -.+.+.++|+.|+||||+|+.++..- .. ...+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999998888888875432 34578899999999999999987521 00 0111223
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEE
Q 043855 245 AWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKI 324 (946)
Q Consensus 245 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~i 324 (946)
+.++.+....+.+ .+++++.....+ ..+++-++|+|++...+....+.+...+......+++
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~P-----------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYLP-----------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhcc-----------------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 3444443333333 223333221110 1345668999999877666677777777655566666
Q ss_pred EEEc-CChhHHHh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHH
Q 043855 325 IVTT-RNQGVAAI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAK 392 (946)
Q Consensus 325 ivTt-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 392 (946)
|++| ....+... ......+++.+++.++..+.+.+.+...+. . --++....|++.++|.+-.+.
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~---i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-E---HDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 6655 44444432 234577999999999999988876643221 1 123556789999999875443
No 83
>PLN03150 hypothetical protein; Provisional
Probab=98.33 E-value=7.9e-07 Score=105.18 Aligned_cols=109 Identities=24% Similarity=0.329 Sum_probs=91.1
Q ss_pred ceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCc-cCCccccCCCCCcEEeccCCCcc-ccccchhcCCCCc
Q 043855 565 LRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIF-ELPDSIGELRHLRYLNLSRTLIE-VLPESVNKLYKLQ 642 (946)
Q Consensus 565 LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~-~lp~~i~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~ 642 (946)
++.|.+.++. +.+.++..+.++++|+.|+|++|.+. .+|..++++.+|++|+|++|.+. .+|..+++|++|+
T Consensus 420 v~~L~L~~n~------L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQG------LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEECCCCC------ccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 5566665543 44566778889999999999999997 78999999999999999999998 7899999999999
Q ss_pred EEecCCCCchhhchhhhccc-CccCeeecCCCCCcccc
Q 043855 643 TLLLEDCDRLKKLCASLGNL-INLHHLNNSNTDSLEEM 679 (946)
Q Consensus 643 ~L~L~~~~~l~~lp~~i~~L-~~L~~L~l~~~~~~~~~ 679 (946)
+|+|++|.....+|..+..+ .++..+++.+|..+...
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 99999997777899988764 56778889888744433
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.33 E-value=3.8e-08 Score=102.76 Aligned_cols=106 Identities=21% Similarity=0.147 Sum_probs=64.9
Q ss_pred cceeeccCCCCCCCccchhHHhhhhhc-ccCceeEEEecCCC-Ccc--CCccccCCCCCcEEeccCC-Cccc--cccchh
Q 043855 564 CLRTFLPVNLPNSSRGLLAFRVLHQLL-RLQRLRVFSLCGYE-IFE--LPDSIGELRHLRYLNLSRT-LIEV--LPESVN 636 (946)
Q Consensus 564 ~LrsL~~~~~~~~~~~~~~~~~~~~l~-~~~~Lr~L~L~~~~-~~~--lp~~i~~l~~Lr~L~Ls~~-~i~~--lp~~i~ 636 (946)
.||.|.+.+..... ...+..+. +++++..|++.+|. +++ +-..-..+.+|++|+|..+ .|+. +-.-..
T Consensus 139 ~lk~LSlrG~r~v~-----~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRAVG-----DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred ccccccccccccCC-----cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 46777776654321 12223333 89999999999984 332 1122256889999999984 4552 222355
Q ss_pred cCCCCcEEecCCCCchhh--chhhhcccCccCeeecCCCC
Q 043855 637 KLYKLQTLLLEDCDRLKK--LCASLGNLINLHHLNNSNTD 674 (946)
Q Consensus 637 ~L~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~ 674 (946)
.+++|.+|++++|..+.. +-....++++|+.+.+.||.
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL 253 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc
Confidence 789999999999976654 22223445555555555553
No 85
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=1.3e-05 Score=91.28 Aligned_cols=196 Identities=17% Similarity=0.178 Sum_probs=110.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|++..++.+.+++.... -.+.+.++|+.|+||||+|+.+++... |.-|.... ..+.-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCCC-CCcccHHHHHHH
Confidence 468999999999999885542 346788999999999999999986321 11121110 111111111111
Q ss_pred HHh-------cCCCCCCcccHHHHHHHHHHH-hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEc-CChhHH
Q 043855 264 RSF-------VADPNVDNRDLILLQLQLKKQ-LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTT-RNQGVA 334 (946)
Q Consensus 264 ~~l-------~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTt-R~~~v~ 334 (946)
... .........+.+.+...+... ..+++-++|+|++...+...+..+...+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 100 000000011122222211110 12344479999998776667777777665444455555544 444443
Q ss_pred H-hhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChh-HHHHHh
Q 043855 335 A-IMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPL-AAKTLG 395 (946)
Q Consensus 335 ~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~~ 395 (946)
. .......+++.++++++....+...+-..+. ... .+.+..+++.++|.+- |+..+-
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is---~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIE---DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 2 2334568999999999999888876543221 111 3457789999999664 444443
No 86
>PTZ00202 tuzin; Provisional
Probab=98.32 E-value=1.9e-05 Score=84.64 Aligned_cols=168 Identities=13% Similarity=0.143 Sum_probs=103.5
Q ss_pred ccccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 181 VNEAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 181 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
.+..+|+||+++...+...|...+. ...+++.|+|++|+|||||++.+..... + .+++.-.. +..++++
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElLr 327 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTLR 327 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHHH
Confidence 3456899999999999999965432 3456999999999999999999996322 1 12222223 7799999
Q ss_pred HHHHHhcCCCCCCc-ccHHHHHHHHHHHh-C-CceEEEEEcCCCCCChh-hHhhhhccCCCCCCCcEEEEEcCChhHHHh
Q 043855 261 VILRSFVADPNVDN-RDLILLQLQLKKQL-S-GKKFLFVLDDVWNESYN-DWVELSHPFEAGAPGSKIIVTTRNQGVAAI 336 (946)
Q Consensus 261 ~il~~l~~~~~~~~-~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~~~-~w~~~~~~l~~~~~gs~iivTtR~~~v~~~ 336 (946)
.++.+++.++.... .-.+.+++.+.+.- . +++.+||+-==...+.. -+.+. -.+.+...-|.|++----+.+.-.
T Consensus 328 ~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~ 406 (550)
T PTZ00202 328 SVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIA 406 (550)
T ss_pred HHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchh
Confidence 99999997443121 12244444444332 2 66777776422111111 11121 123344456777775544433211
Q ss_pred ---hCCCCcEeCCCCChHHHHHHHHHh
Q 043855 337 ---MGTVPAYQLKKLSDHDCLALFARH 360 (946)
Q Consensus 337 ---~~~~~~~~l~~L~~~e~~~Lf~~~ 360 (946)
......|.+.+++.+++.++..+.
T Consensus 407 ~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 407 NTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cccCccceeEecCCCCHHHHHHHHhhc
Confidence 123356889999999998887654
No 87
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=1.7e-05 Score=87.37 Aligned_cols=183 Identities=14% Similarity=0.123 Sum_probs=109.3
Q ss_pred ccccchhHHHHHHHHHhcCCCC----CCCCcEEEEEEecCCChHHHHHHHHhcccccc-------------------ccC
Q 043855 185 HVYGREIEKKEIVELLLRDDLM----NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVR-------------------DHF 241 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~F 241 (946)
+++|-+..++.|.+++...... ...-.+.+.++|++|+||||+|+.++....-. .|.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 5889999999999999764210 01134678899999999999999987621000 011
Q ss_pred CceEEEEeC-CCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCC
Q 043855 242 DLKAWTCVS-DDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAP 320 (946)
Q Consensus 242 ~~~~wv~~~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~ 320 (946)
| ..++... ....+.+ .+++.+.+... -..+++-++|+|++...+......+...+.....
T Consensus 86 D-~~~i~~~~~~i~i~~-iR~l~~~~~~~-----------------p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 86 D-VRVVAPEGLSIGVDE-VRELVTIAARR-----------------PSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred C-EEEeccccccCCHHH-HHHHHHHHHhC-----------------cccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 1 1112111 1111111 11222211111 1134556888899988776666667666655455
Q ss_pred CcEEEEEcCC-hhHHHh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 321 GSKIIVTTRN-QGVAAI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 321 gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
+..+|++|.+ ..+... ......+.+.+++.++..+.+.+.. + .. .+.+..+++.++|.|..+..+.
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~-----~~---~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G-----VD---PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C-----CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 6666665555 344322 3345789999999999998887432 1 11 2456789999999997665554
No 88
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.5e-05 Score=90.03 Aligned_cols=188 Identities=16% Similarity=0.187 Sum_probs=108.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc-------------------CCce
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDH-------------------FDLK 244 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------F~~~ 244 (946)
.++||.+...+.|...+.... -.+.+.++|++|+||||+|+.+++...-... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 458999888888888775432 3356889999999999999999873211000 0012
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEE
Q 043855 245 AWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKI 324 (946)
Q Consensus 245 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~i 324 (946)
..+..+...++..+ +++.+.+.. .-..+++-++|+|+++..+....+.+...+........+
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~-----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGY-----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhh-----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 22222222222111 122211110 012356679999999765544556666665543334444
Q ss_pred EEEcCC-hhHHHhh-CCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCC-ChhHHHHHhhhh
Q 043855 325 IVTTRN-QGVAAIM-GTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDG-LPLAAKTLGGLL 398 (946)
Q Consensus 325 ivTtR~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~G-lPLai~~~~~~l 398 (946)
|++|.+ ..+...+ .....+++.+++.++....+.+.+...+- .. -++....|++.++| .+.|+..+-.+.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i---~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EI---DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444443 3443322 34568999999999998888877643221 11 13556778887765 567777665543
No 89
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.30 E-value=3.4e-06 Score=82.84 Aligned_cols=182 Identities=21% Similarity=0.202 Sum_probs=93.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+|||-+.-++.+.-++..... ..+.+..+.+||++|+||||||+-+++. ....|. +.+.+.--...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~~i~k~~------- 90 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGPAIEKAG------- 90 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECCC--SCH-------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccchhhhhHH-------
Confidence 4699999888876555432110 2246778899999999999999999994 444442 22221100111
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCC--------CCCCC-----------cEE
Q 043855 264 RSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFE--------AGAPG-----------SKI 324 (946)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~--------~~~~g-----------s~i 324 (946)
++...+.. + +++-+|++|++..-+...-+.+..++. ..+++ +-|
T Consensus 91 ---------------dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 91 ---------------DLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp ---------------HHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred ---------------HHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 11111211 1 234577778887654333222222211 11112 223
Q ss_pred EEEcCChhHHHhhC-CCC-cEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhc
Q 043855 325 IVTTRNQGVAAIMG-TVP-AYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLR 399 (946)
Q Consensus 325 ivTtR~~~v~~~~~-~~~-~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~ 399 (946)
=.|||..-+...+. ... ..+++..+.+|-.++..+.+--- .-+--++.+.+|+++|.|-|--+.-+-+..+
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l----~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL----NIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT----T-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh----CCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 45888755543332 222 35899999999999998765322 1223457889999999999976555544443
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.6e-05 Score=90.87 Aligned_cols=183 Identities=14% Similarity=0.129 Sum_probs=111.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc-------------------ccCCce
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVR-------------------DHFDLK 244 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~F~~~ 244 (946)
.++||-+.-++.|.+++.... -.+.+.++|+.|+||||+|+.++....-. +.|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 458999999999999996542 34567899999999999999998732110 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEE
Q 043855 245 AWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKI 324 (946)
Q Consensus 245 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~i 324 (946)
+.+..+....+.++ +++++.+... -..++.-++|+|++...+......+...+......+++
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~-----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA-----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc-----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 33333222222221 2233222111 12356668999999887766777777766654456666
Q ss_pred EEEcCC-hhHHH-hhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHH
Q 043855 325 IVTTRN-QGVAA-IMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKT 393 (946)
Q Consensus 325 ivTtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 393 (946)
|++|.+ ..+.. .......+++++++.++....+.+.+-..+. .. -.+....|++.++|.+--+..
T Consensus 153 Ilattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~~---~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 153 ILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV-EF---ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCcHHHHHH
Confidence 665543 33332 2234567899999999887776655432211 11 124567788999998754443
No 91
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=2.5e-05 Score=84.87 Aligned_cols=197 Identities=14% Similarity=0.133 Sum_probs=115.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc--ccCCceEEEEeCCCCCHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVR--DHFDLKAWTCVSDDFDVVRLIKV 261 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~~ 261 (946)
..++|.++..+.+...+.... -...+.|+|+.|+||||+|+.+...---. ..+... ............+.
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 568999999999999986542 35678999999999999999888732110 001111 00011111112222
Q ss_pred HHHH-------hcCC--CC----CCcccHHHHHHHHHHHh-----CCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcE
Q 043855 262 ILRS-------FVAD--PN----VDNRDLILLQLQLKKQL-----SGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSK 323 (946)
Q Consensus 262 il~~-------l~~~--~~----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~ 323 (946)
+... +... .. ......+++. .+.+++ .+++-++|+|++...+....+.+...+........
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 2221 1000 00 0111233332 333333 35677999999988777677777666654334445
Q ss_pred E-EEEcCChhHHH-hhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 324 I-IVTTRNQGVAA-IMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 324 i-ivTtR~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
+ ++|++...+.. .......+++.+++.++..+++.+..... . -..+....|++.++|.|..+..+.
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 44544433322 22345689999999999999998743211 1 113446789999999998766554
No 92
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.27 E-value=5.5e-06 Score=97.97 Aligned_cols=171 Identities=23% Similarity=0.248 Sum_probs=97.2
Q ss_pred cccccchhHHH---HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 184 AHVYGREIEKK---EIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 184 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
.+++|.+..+. .+...+.. +....+.|+|++|+||||||+.+++. ...+|. .++... ..+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i~---- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGVK---- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhhH----
Confidence 35788887664 45555533 24566789999999999999999983 334441 111110 0011
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHh--CCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEE--EcCChh--HH
Q 043855 261 VILRSFVADPNVDNRDLILLQLQLKKQL--SGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIV--TTRNQG--VA 334 (946)
Q Consensus 261 ~il~~l~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iiv--TtR~~~--v~ 334 (946)
+.........+.+ .+++.+|||||++..+...++.+...+. .|+.+++ ||.+.. +.
T Consensus 92 ---------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 92 ---------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred ---------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 1111111111111 2467899999998766556666655443 3555555 344431 22
Q ss_pred H-hhCCCCcEeCCCCChHHHHHHHHHhhcCCCC---CCCchhHHHHHHHHHHhcCCCh
Q 043855 335 A-IMGTVPAYQLKKLSDHDCLALFARHSLGTRD---FSSHKSLEKIGREIVTKCDGLP 388 (946)
Q Consensus 335 ~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~---~~~~~~l~~~~~~i~~~~~GlP 388 (946)
. .......+.+++|+.++...++.+.+-.... .....--++....|++.+.|..
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 1 1223467999999999999998876531000 0011112355677888888864
No 93
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.27 E-value=8.8e-08 Score=97.97 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=60.6
Q ss_pred ccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCC-----CcCcCCCCCCCccEEEEe
Q 043855 735 AQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEF-----PTWLGDFSFSNLVTLKFE 809 (946)
Q Consensus 735 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~~~l~~L~~L~L~ 809 (946)
..+...+.|+.+.+..|.+.. .........+..|++|+.|+|..|.++.- ..-+. .+++|+.|+++
T Consensus 179 ~~~~~~~~leevr~~qN~I~~-------eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~--s~~~L~El~l~ 249 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRP-------EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS--SWPHLRELNLG 249 (382)
T ss_pred HHHHhccccceEEEecccccC-------chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc--ccchheeeccc
Confidence 344455666666666665443 11223445666677777777777665421 11111 34567777777
Q ss_pred cCCCCCC--C---CC-CCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCc
Q 043855 810 DCGMCTS--L---PS-VGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMR 865 (946)
Q Consensus 810 ~~~~~~~--l---~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 865 (946)
+|.+... . .. -...|+|++|.+.+|.--..-...+.. +...-|.|+.|.++++.
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~--~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA--CMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH--HHhcchhhHHhcCCccc
Confidence 7765421 1 01 123677777777765321111110000 01125677777777653
No 94
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.26 E-value=2.8e-05 Score=77.55 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=64.3
Q ss_pred CceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh-hHHHh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCC
Q 043855 290 GKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ-GVAAI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDF 367 (946)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~ 367 (946)
+.+-++|+||+...+...++.+...+......+.+|++|++. .+... ......+++.+++.++..+.+.+. + -
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 556789999997766666777777776555566777766653 22221 123468999999999999888876 1 1
Q ss_pred CCchhHHHHHHHHHHhcCCChhH
Q 043855 368 SSHKSLEKIGREIVTKCDGLPLA 390 (946)
Q Consensus 368 ~~~~~l~~~~~~i~~~~~GlPLa 390 (946)
. ++.++.|++.++|.|..
T Consensus 170 ~-----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 S-----EEAAELLLALAGGSPGA 187 (188)
T ss_pred C-----HHHHHHHHHHcCCCccc
Confidence 1 35688999999998853
No 95
>PRK08727 hypothetical protein; Validated
Probab=98.25 E-value=1.6e-05 Score=81.75 Aligned_cols=148 Identities=17% Similarity=0.087 Sum_probs=88.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGK 291 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 291 (946)
..+.|+|..|+|||+|++.+++. .......+.++++.+ ....+. ..+.. + .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~------------------~~~~~-l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR------------------DALEA-L-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH------------------HHHHH-H-hc
Confidence 45999999999999999999874 333333455665422 111110 01111 1 13
Q ss_pred eEEEEEcCCCCCC-hhhHhhhhccCCC--CCCCcEEEEEcCCh---------hHHHhhCCCCcEeCCCCChHHHHHHHHH
Q 043855 292 KFLFVLDDVWNES-YNDWVELSHPFEA--GAPGSKIIVTTRNQ---------GVAAIMGTVPAYQLKKLSDHDCLALFAR 359 (946)
Q Consensus 292 r~LlVlDdv~~~~-~~~w~~~~~~l~~--~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 359 (946)
.-+|||||+.... ...|......+.. ...|..||+|++.. ++...+.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999996432 1234332222211 12456799999853 2233334456899999999999999998
Q ss_pred hhcCCCCCCCchhHHHHHHHHHHhcCCChhHH
Q 043855 360 HSLGTRDFSSHKSLEKIGREIVTKCDGLPLAA 391 (946)
Q Consensus 360 ~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 391 (946)
++...+- . --++...-|++.+.|-.-.+
T Consensus 174 ~a~~~~l-~---l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGL-A---LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCC-C---CCHHHHHHHHHhCCCCHHHH
Confidence 7654221 1 12356778888888766554
No 96
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.1e-05 Score=87.87 Aligned_cols=201 Identities=14% Similarity=0.125 Sum_probs=110.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEE-eCCCCCHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTC-VSDDFDVVRLIKVI 262 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i 262 (946)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+++.-.-...+....|.. +....+.-..-+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 458999999999988885432 235688999999999999999887321111010001110 00000000111111
Q ss_pred HHHhcCC----CCCCcccHHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEc-CChhH
Q 043855 263 LRSFVAD----PNVDNRDLILLQLQLKKQ----LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTT-RNQGV 333 (946)
Q Consensus 263 l~~l~~~----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTt-R~~~v 333 (946)
....... ........+++....... ..+++-++|+|++...+...|..+...+......+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 1000000 000111122322211111 23456688999998776667888877776555566666555 44444
Q ss_pred HHhh-CCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHH
Q 043855 334 AAIM-GTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKT 393 (946)
Q Consensus 334 ~~~~-~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 393 (946)
...+ .....+++.++++++..+.+...+-..+. .--.+.++.|++.++|.+--+..
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~----~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI----SVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3322 23457899999999998888776532111 11236678899999997754433
No 97
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.1e-08 Score=98.59 Aligned_cols=91 Identities=23% Similarity=0.287 Sum_probs=54.8
Q ss_pred CCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcC--CCCCCCccEEEEecCCCC
Q 043855 737 LDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLG--DFSFSNLVTLKFEDCGMC 814 (946)
Q Consensus 737 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~--~~~l~~L~~L~L~~~~~~ 814 (946)
+.+|+.|..|+|+||..... .-......+ -++|..|+|+||.-.-.-+.+. ...+++|..|+|++|..+
T Consensus 256 ~~scs~L~~LNlsWc~l~~~-------~Vtv~V~hi--se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTE-------KVTVAVAHI--SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred HHhhhhHhhcCchHhhccch-------hhhHHHhhh--chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 55667788888888765540 001111122 3578888888875221111110 015788888888888765
Q ss_pred CC--CCCCCCCCCCceeeeccccC
Q 043855 815 TS--LPSVGQLPSLKHLVVRRMSR 836 (946)
Q Consensus 815 ~~--l~~l~~l~~L~~L~L~~~~~ 836 (946)
+. +..+.+++.|++|.++.|..
T Consensus 327 ~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 327 KNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred CchHHHHHHhcchheeeehhhhcC
Confidence 43 22466788888888888864
No 98
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=3.1e-05 Score=89.14 Aligned_cols=181 Identities=15% Similarity=0.162 Sum_probs=108.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc-------------------ccCCce
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVR-------------------DHFDLK 244 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~F~~~ 244 (946)
.+++|-+..++.+.+++.... -.+.+.++|+.|+||||+|+.+.....-. +.|.-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 458999999999999986542 34567899999999999999997632110 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEE
Q 043855 245 AWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKI 324 (946)
Q Consensus 245 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~i 324 (946)
+++..+....+.+ +++++..+... -..+++-++|+|++...+......+...+......+.+
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~~-----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQYA-----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhhC-----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 2232222111111 12222222111 11356679999999877766677777666654455666
Q ss_pred EEEcCC-hhHH-HhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHH
Q 043855 325 IVTTRN-QGVA-AIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAA 391 (946)
Q Consensus 325 ivTtR~-~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 391 (946)
|++|.+ +.+. ........+++++++.++..+.+.+.+-..+. . .-++..+.|++.++|.+--+
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-~---~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-P---FDATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHH
Confidence 655543 3332 11223467899999999998888765532211 1 12345678899999987533
No 99
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=3.4e-05 Score=89.48 Aligned_cols=199 Identities=15% Similarity=0.146 Sum_probs=112.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCC--ceEEEEeCCCCCHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFD--LKAWTCVSDDFDVVRLIKV 261 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~ 261 (946)
.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-..... ...+- ..+.-.--+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHH
Confidence 469999999999999986542 345788999999999999999987321110000 00000 0000001111
Q ss_pred HHHHhcC-------CCCCCcccHHHHHHHHHH-HhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEc-CChh
Q 043855 262 ILRSFVA-------DPNVDNRDLILLQLQLKK-QLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTT-RNQG 332 (946)
Q Consensus 262 il~~l~~-------~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTt-R~~~ 332 (946)
|...-.. .......++.++...++. -..+++-++|+|++...+....+.+...+..-...+.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1110000 000011122222222211 112455689999997776666777776665544566666544 4444
Q ss_pred HHHh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 333 VAAI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 333 v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
+... ......+++.+++.++....+.+.+-..+. .. -.+....|++.++|.+.-+...-
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i---~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EV---EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 3322 234568999999999999888876543221 11 13567889999999886655443
No 100
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.20 E-value=2.1e-06 Score=91.64 Aligned_cols=99 Identities=21% Similarity=0.183 Sum_probs=66.4
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCCC
Q 043855 195 EIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF--DVVRLIKVILRSFVADPNV 272 (946)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~ 272 (946)
++++.+..- +...-..|+|++|+||||||++||++.... +|+..+||.+.+.. ++.++++++...+-.....
T Consensus 158 rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 455555443 344567899999999999999999975444 89999999999887 7788888876433222221
Q ss_pred CcccHH--------HHHHHHHHHhCCceEEEEEcCCC
Q 043855 273 DNRDLI--------LLQLQLKKQLSGKKFLFVLDDVW 301 (946)
Q Consensus 273 ~~~~~~--------~~~~~l~~~l~~kr~LlVlDdv~ 301 (946)
...... +.+..++ -.+++.+|++|++.
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~--e~G~dVlL~iDsIt 266 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLV--EHGKDVVILLDSIT 266 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHH--HcCCCEEEEEEChH
Confidence 111111 1111222 36799999999994
No 101
>PRK09087 hypothetical protein; Validated
Probab=98.20 E-value=2.1e-05 Score=80.25 Aligned_cols=142 Identities=13% Similarity=0.115 Sum_probs=87.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSG 290 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 290 (946)
.+.+.|+|++|+|||+|++.++.... ..+++.. .+..+++..+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~----------------------~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAA----------------------AE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhh----------------------hc
Confidence 36689999999999999999987421 1133221 1111111111 11
Q ss_pred ceEEEEEcCCCCC--ChhhHhhhhccCCCCCCCcEEEEEcCC---------hhHHHhhCCCCcEeCCCCChHHHHHHHHH
Q 043855 291 KKFLFVLDDVWNE--SYNDWVELSHPFEAGAPGSKIIVTTRN---------QGVAAIMGTVPAYQLKKLSDHDCLALFAR 359 (946)
Q Consensus 291 kr~LlVlDdv~~~--~~~~w~~~~~~l~~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~Lf~~ 359 (946)
-+|++||+... +...+..+...+.. .|..||+|++. +++...+....+++++++++++-.+++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 27888999543 22233333333332 36678888873 34445556667899999999999999998
Q ss_pred hhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 360 HSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 360 ~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
++-... .. --+++..-|++.+.|..-++..+-
T Consensus 165 ~~~~~~-~~---l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 165 LFADRQ-LY---VDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHHcC-CC---CCHHHHHHHHHHhhhhHHHHHHHH
Confidence 774321 11 124667788888888776666433
No 102
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.19 E-value=2.2e-05 Score=81.01 Aligned_cols=155 Identities=13% Similarity=0.108 Sum_probs=91.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSG 290 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 290 (946)
...+.|+|++|+|||+|++.+++.. ...-..+.++.+..... . ..+....+ ..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~---~------------------~~~~~~~~----~~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW---F------------------VPEVLEGM----EQ 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh---h------------------hHHHHHHh----hh
Confidence 3578999999999999999999842 22222345555532100 0 00111111 11
Q ss_pred ceEEEEEcCCCCCCh-hhHhhhh-ccCCC-CCCC-cEEEEEcCCh---------hHHHhhCCCCcEeCCCCChHHHHHHH
Q 043855 291 KKFLFVLDDVWNESY-NDWVELS-HPFEA-GAPG-SKIIVTTRNQ---------GVAAIMGTVPAYQLKKLSDHDCLALF 357 (946)
Q Consensus 291 kr~LlVlDdv~~~~~-~~w~~~~-~~l~~-~~~g-s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf 357 (946)
--+|+|||+..... ..|+... ..+.. ...| .++|+||+.. ++...+....+++++++++++-.+++
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 13789999965321 3454332 21211 0123 4789998754 33444555678999999999999999
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhh
Q 043855 358 ARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGL 397 (946)
Q Consensus 358 ~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~ 397 (946)
.+++...+ .. --+++..-|++.+.|..-++..+-..
T Consensus 177 ~~~a~~~~-~~---l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 177 QLRARLRG-FE---LPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHHcC-CC---CCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 87664321 11 22467788888888876555544433
No 103
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=4.4e-05 Score=81.75 Aligned_cols=214 Identities=15% Similarity=0.136 Sum_probs=129.4
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHH
Q 043855 182 NEAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKV 261 (946)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 261 (946)
.+..++||+.|++.+.+|+...-. ....+.+.|.|-+|.|||.+...++.+..-...=..++.+.+..-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 456799999999999999976542 345678999999999999999999985322111124567777665677888888
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHhCCc--eEEEEEcCCCCCChhhHhhhhccCC-CCCCCcEEEEEcCC--hhHHH-
Q 043855 262 ILRSFVADPNVDNRDLILLQLQLKKQLSGK--KFLFVLDDVWNESYNDWVELSHPFE-AGAPGSKIIVTTRN--QGVAA- 335 (946)
Q Consensus 262 il~~l~~~~~~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~w~~~~~~l~-~~~~gs~iivTtR~--~~v~~- 335 (946)
|...+......... ..+.+..+.+...+. .+|+|+|..+.-....-..+...|. +.-+++|+|+.--- -+...
T Consensus 226 I~~~~~q~~~s~~~-~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGT-GMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHhcCCch-hHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 88877322221112 244555566666543 6899999985321111111212221 22356665543211 11111
Q ss_pred ----h----hCCCCcEeCCCCChHHHHHHHHHhhcCCCCC-CCchhHHHHHHHHHHhcCCChhHHHHHhhhh
Q 043855 336 ----I----MGTVPAYQLKKLSDHDCLALFARHSLGTRDF-SSHKSLEKIGREIVTKCDGLPLAAKTLGGLL 398 (946)
Q Consensus 336 ----~----~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~-~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 398 (946)
. ......+...|.+.++..++|.++.-..... ..+..++-.|++++.-.|-+--|+.+.-+.+
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1 1134578889999999999999886432221 1223455555555555566666666665544
No 104
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.16 E-value=6.5e-07 Score=101.20 Aligned_cols=108 Identities=25% Similarity=0.297 Sum_probs=81.9
Q ss_pred hhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCcc
Q 043855 586 LHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINL 665 (946)
Q Consensus 586 ~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 665 (946)
...+..+++|..|++.+|.+..+...+..+.+|++|+|++|.|+.+ ..+..|+.|+.|++++| .+..++ .+..+++|
T Consensus 88 ~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L 164 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDIS-GLESLKSL 164 (414)
T ss_pred hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhcc-CCccchhh
Confidence 3346678889999999998888766588889999999999998887 45777888999999988 666663 46668889
Q ss_pred CeeecCCCCCccccccc-cCCCCCCcccCceec
Q 043855 666 HHLNNSNTDSLEEMPIG-IGKLTSLQTLCSFVV 697 (946)
Q Consensus 666 ~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~ 697 (946)
+.+++++|. +..+... ...+.+|+.+.+..+
T Consensus 165 ~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 165 KLLDLSYNR-IVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred hcccCCcch-hhhhhhhhhhhccchHHHhccCC
Confidence 999999887 6555442 466677776655443
No 105
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=7.1e-05 Score=86.29 Aligned_cols=198 Identities=17% Similarity=0.098 Sum_probs=113.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.++||.+..++.|.+++.... -.+.+.++|+.|+||||+|+.++....-....+ + ..++.-..-+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 468999999999999986532 345678999999999999999986321000000 0 0000000011110
Q ss_pred HH---------hcCCCCCCcccHHHHHHHHHHH-hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEE-EcCChh
Q 043855 264 RS---------FVADPNVDNRDLILLQLQLKKQ-LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIV-TTRNQG 332 (946)
Q Consensus 264 ~~---------l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iiv-TtR~~~ 332 (946)
.. +.........+..++...+... ..+++-++|+|++...+....+.+...+........+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 0000000111222222222211 134566899999988777778888777765555666555 544444
Q ss_pred HHHh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChh-HHHHHhhh
Q 043855 333 VAAI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPL-AAKTLGGL 397 (946)
Q Consensus 333 v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~~~~ 397 (946)
+... ......+++.+++.++..+.+.+.+-..+. .. -.+....|++.++|.+- |+..+-.+
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i---~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VV---DDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4432 334678999999999998888775543221 11 13456778999999774 44444443
No 106
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=1.8e-06 Score=67.89 Aligned_cols=58 Identities=33% Similarity=0.429 Sum_probs=51.6
Q ss_pred CCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhchh-hhcccCccCeeecCCCC
Q 043855 616 RHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKLCA-SLGNLINLHHLNNSNTD 674 (946)
Q Consensus 616 ~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 674 (946)
++|++|++++|.++.+|. .|..+++|++|++++| .+..+|. .+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999985 6889999999999998 6777765 68999999999999986
No 107
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=7.2e-08 Score=96.03 Aligned_cols=81 Identities=22% Similarity=0.230 Sum_probs=57.6
Q ss_pred ceeEEEecCCCCc--cCCccccCCCCCcEEeccCCCcc-ccccchhcCCCCcEEecCCCCchhhch--hhhcccCccCee
Q 043855 594 RLRVFSLCGYEIF--ELPDSIGELRHLRYLNLSRTLIE-VLPESVNKLYKLQTLLLEDCDRLKKLC--ASLGNLINLHHL 668 (946)
Q Consensus 594 ~Lr~L~L~~~~~~--~lp~~i~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L 668 (946)
.|++|||+...++ .+..-++.|.+|+-|+|.++.+. .+...|.+-.+|+.|||+.|+.+.+.. --+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5788888887776 34445677888888888887766 445567777888888888876655432 236677888888
Q ss_pred ecCCCC
Q 043855 669 NNSNTD 674 (946)
Q Consensus 669 ~l~~~~ 674 (946)
++++|.
T Consensus 266 NlsWc~ 271 (419)
T KOG2120|consen 266 NLSWCF 271 (419)
T ss_pred CchHhh
Confidence 888876
No 108
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=7.1e-05 Score=85.91 Aligned_cols=199 Identities=15% Similarity=0.167 Sum_probs=113.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|-+..++.|.+.+.... -...+.++|+.|+||||+|+.+++...-....+ ...++.-..-+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHh
Confidence 358898888888888885432 246788899999999999999987421110000 00011111111111
Q ss_pred HHh-------cCCCCCCcccHHHHHHHHHH-HhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCC-hhHH
Q 043855 264 RSF-------VADPNVDNRDLILLQLQLKK-QLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRN-QGVA 334 (946)
Q Consensus 264 ~~l-------~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~-~~v~ 334 (946)
... .........+...+...+.. -..+++-++|||++...+...+..+...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 100 00000001111222111111 12356679999999877766777777776543344555555544 4443
Q ss_pred Hh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCCh-hHHHHHhhhh
Q 043855 335 AI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLP-LAAKTLGGLL 398 (946)
Q Consensus 335 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlP-Lai~~~~~~l 398 (946)
.. ......+++++++.++....+...+..... . --.+.++.|++.++|.+ -|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-D---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 234567899999999999888876543221 1 12356778899999965 6777766544
No 109
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=6.7e-05 Score=90.07 Aligned_cols=180 Identities=14% Similarity=0.085 Sum_probs=110.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc----------------------cC
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRD----------------------HF 241 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----------------------~F 241 (946)
.++||.+..++.|..++.... -.+.+.++|+.|+||||+|+.+.+...-.. ++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 358999999999999986542 335678999999999999999986421100 11
Q ss_pred CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH-HHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCC
Q 043855 242 DLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLK-KQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAP 320 (946)
Q Consensus 242 ~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~ 320 (946)
+ ++++.......+ .++.++...+. .-..+++-++|||++...+...++.++..+..-..
T Consensus 90 d-v~eidaas~~~V-------------------d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~ 149 (824)
T PRK07764 90 D-VTEIDAASHGGV-------------------DDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPE 149 (824)
T ss_pred c-EEEecccccCCH-------------------HHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCC
Confidence 1 112211111111 11122221111 11235566889999988887788888887776555
Q ss_pred CcEEEEEc-CChhHHHh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHH
Q 043855 321 GSKIIVTT-RNQGVAAI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAK 392 (946)
Q Consensus 321 gs~iivTt-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 392 (946)
.+.+|++| ....+... ......|++..++.++..+++.+.+-..+. . .-.+....|++.++|.+..+.
T Consensus 150 ~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-~---id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 150 HLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-P---VEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred CeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 66666555 44444432 334678999999999998888765422111 1 113456788999999884443
No 110
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.11 E-value=4.6e-07 Score=102.47 Aligned_cols=104 Identities=27% Similarity=0.315 Sum_probs=84.2
Q ss_pred ccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeec
Q 043855 591 RLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNN 670 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 670 (946)
.+..+..+++..|.+..+-..++.+.+|.+|++.+|.|..+...+..+++|++|++++| .+..+ ..+..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhhee
Confidence 45666777788888887556688999999999999999998766899999999999999 77777 45888889999999
Q ss_pred CCCCCccccccccCCCCCCcccCceecC
Q 043855 671 SNTDSLEEMPIGIGKLTSLQTLCSFVVG 698 (946)
Q Consensus 671 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 698 (946)
++|. +..++ ++..+++|+.+++..+.
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLLDLSYNR 173 (414)
T ss_pred ccCc-chhcc-CCccchhhhcccCCcch
Confidence 9998 76654 46667788877664443
No 111
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.11 E-value=3.6e-05 Score=79.35 Aligned_cols=153 Identities=19% Similarity=0.164 Sum_probs=88.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhC
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLS 289 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 289 (946)
....+.|+|..|+|||+||+.+++... .... ...+++..... .. + ...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~----~-------------------~~~- 88 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LA----F-------------------DFD- 88 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HH----H-------------------hhc-
Confidence 346788999999999999999998421 1111 33444443311 00 0 011
Q ss_pred CceEEEEEcCCCCCChhhHhhhhccCCCC-CCCc-EEEEEcCChhHHH--------hhCCCCcEeCCCCChHHHHHHHHH
Q 043855 290 GKKFLFVLDDVWNESYNDWVELSHPFEAG-APGS-KIIVTTRNQGVAA--------IMGTVPAYQLKKLSDHDCLALFAR 359 (946)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~w~~~~~~l~~~-~~gs-~iivTtR~~~v~~--------~~~~~~~~~l~~L~~~e~~~Lf~~ 359 (946)
...-+||+||+...+...-..+...+... ..+. .||+|++...... .+.....+++.++++++-..++.+
T Consensus 89 ~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 89 PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 22347889999654322222233333211 1333 4667766533221 222346789999999887777765
Q ss_pred hhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhh
Q 043855 360 HSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLL 398 (946)
Q Consensus 360 ~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 398 (946)
.+-..+ .. --++..+.+++.+.|.+..+..+-..+
T Consensus 169 ~~~~~~-v~---l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 169 AAAERG-LQ---LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHcC-CC---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 432211 11 223567788889999999887777655
No 112
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.0001 Score=82.02 Aligned_cols=181 Identities=17% Similarity=0.206 Sum_probs=104.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc------cccCCceE-EEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRV------RDHFDLKA-WTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~------~~~F~~~~-wv~~~~~~~~~ 256 (946)
.+++|.+...+.+.+.+.... -.+.+.++|++|+||||+|+.+.+.-.- ...|...+ -+......++.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 358999999999999986532 3468889999999999999999773211 01121111 11111111111
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEc-CChhHHH
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTT-RNQGVAA 335 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTt-R~~~v~~ 335 (946)
..+++++++... -..+++-++|+|++.......+..+...+......+.+|++| ....+..
T Consensus 92 -~i~~l~~~~~~~-----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 92 -DIRNLIDQVRIP-----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred -HHHHHHHHHhhc-----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 111222221110 012455689999997655455666655554333445555554 3333322
Q ss_pred -hhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHH
Q 043855 336 -IMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAA 391 (946)
Q Consensus 336 -~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 391 (946)
.......++..++++++....+...+...+- .. -.+..+.|++.++|.+-.+
T Consensus 154 ~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i---~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 154 TILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KF---EDDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHhcceeEecCCccHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHhCCCCHHHH
Confidence 2234457899999999999888876643221 11 1356778888899866533
No 113
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=0.0001 Score=86.01 Aligned_cols=191 Identities=16% Similarity=0.177 Sum_probs=109.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc-C------CceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDH-F------DLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F------~~~~wv~~~~~~~~~ 256 (946)
.+++|.+..++.|.+++.... -.+.+.++|+.|+||||+|+.++..---... . .|... ....+++.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~--~~~~~Dvi 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN--VNNSLDII 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh--hcCCCcEE
Confidence 458999999999999986542 3466789999999999999999863110000 0 00000 00000000
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHH-hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEE-EEcCChhHH
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQ-LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKII-VTTRNQGVA 334 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~ii-vTtR~~~v~ 334 (946)
. +.........+++++...+... ..+++-++|+|++...+...+..+...+......+.+| +|++...+.
T Consensus 91 e--------idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 91 E--------MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred E--------EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 0 0000000111122222222211 23566699999998777677877777665444445544 555555554
Q ss_pred H-hhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHH
Q 043855 335 A-IMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKT 393 (946)
Q Consensus 335 ~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 393 (946)
. .......+++.+++.++....+...+-..+. . .-.+.++.|++.++|.+--+..
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~---id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENI-S---YEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 3 2345578999999999999888775432221 1 1134577899999997754433
No 114
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.09 E-value=8.5e-06 Score=90.29 Aligned_cols=181 Identities=15% Similarity=0.136 Sum_probs=99.8
Q ss_pred cccccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCC
Q 043855 182 NEAHVYGREIEKKEIVELLLRDDL-------MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFD 254 (946)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 254 (946)
...++.|+++.+++|.+.+...-. .+-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 345799999999999887743210 01123456889999999999999999983 33333 22211
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCC-----------hh---hHhhhhccCC--CC
Q 043855 255 VVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNES-----------YN---DWVELSHPFE--AG 318 (946)
Q Consensus 255 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~w~~~~~~l~--~~ 318 (946)
..+ .....+ .....+...+...-...+.+|+|||++... .. .+..+...+. ..
T Consensus 190 -~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SEL----VRKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHH----HHHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 111 111100 011111222222223467899999986421 01 1222222221 11
Q ss_pred CCCcEEEEEcCChhHHH-hh----CCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 043855 319 APGSKIIVTTRNQGVAA-IM----GTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLP 388 (946)
Q Consensus 319 ~~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlP 388 (946)
..+.+||.||...+... .+ .-...+.+...+.++..++|..++.+..- ..... ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 24667888887643221 11 12346889999999999999987654321 11112 345677777654
No 115
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00013 Score=85.78 Aligned_cols=198 Identities=15% Similarity=0.145 Sum_probs=112.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.++.......... ....++.-...+.|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 468999999999988886432 345678999999999999999986321000000 000111112222222
Q ss_pred HHhcCC-------CCCCcccHHHHHHHHHHH-hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCC-hhHH
Q 043855 264 RSFVAD-------PNVDNRDLILLQLQLKKQ-LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRN-QGVA 334 (946)
Q Consensus 264 ~~l~~~-------~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~-~~v~ 334 (946)
...... ......+..++...+... ..+++-++|||++...+....+.+...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 111100 000111122222222111 1245678999999776655666776666554455666665543 3333
Q ss_pred Hh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhh
Q 043855 335 AI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGG 396 (946)
Q Consensus 335 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 396 (946)
.. ......+.+.+++.++....+.+.+...+. .. -.+....|++.++|.+..+...-.
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i---~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-NL---EPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 234467889999999988888776543221 11 135677899999998865554433
No 116
>PRK05642 DNA replication initiation factor; Validated
Probab=98.08 E-value=5.4e-05 Score=77.92 Aligned_cols=156 Identities=21% Similarity=0.252 Sum_probs=91.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSG 290 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 290 (946)
...+.|+|..|+|||.|++.+++.. ...-..++|++..+ +... .. .+.+.+++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~---------------~~----~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR---------------GP----ELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh---------------hH----HHHHhhhh
Confidence 3678999999999999999998732 22123456665432 1110 01 12222222
Q ss_pred ceEEEEEcCCCCCC-hhhHhh-hhccCCC-CCCCcEEEEEcCChh---------HHHhhCCCCcEeCCCCChHHHHHHHH
Q 043855 291 KKFLFVLDDVWNES-YNDWVE-LSHPFEA-GAPGSKIIVTTRNQG---------VAAIMGTVPAYQLKKLSDHDCLALFA 358 (946)
Q Consensus 291 kr~LlVlDdv~~~~-~~~w~~-~~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~Lf~ 358 (946)
-. +||+||+.... ...|.. +...+.. ...|..||+|++... +...+....+++++++++++-.+++.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 68899996431 135544 2222211 124667888887532 22333344678999999999999998
Q ss_pred HhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhh
Q 043855 359 RHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLL 398 (946)
Q Consensus 359 ~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 398 (946)
+++.... ...+ +++..-|++.+.|..-.+..+-..|
T Consensus 177 ~ka~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRG-LHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 7664322 1111 4677888888888766555544433
No 117
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.08 E-value=1.6e-05 Score=86.07 Aligned_cols=58 Identities=21% Similarity=0.382 Sum_probs=28.2
Q ss_pred CCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCC-CCCCCCCceeeeccccCce
Q 043855 774 PHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPS-VGQLPSLKHLVVRRMSRVK 838 (946)
Q Consensus 774 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~ 838 (946)
.+.+++.|+|++|.+..+|. + .++|++|.+++|..+..+|. + .++|+.|.+++|..+.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~-L----P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV-L----PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS 108 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC-C----CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc
Confidence 34555555555555555551 1 13455555555554444442 1 1355555555554443
No 118
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.06 E-value=7.7e-05 Score=74.85 Aligned_cols=180 Identities=18% Similarity=0.155 Sum_probs=100.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.++||-++-++++.=++..... ....+-.+.++|++|.||||||.-+++. ....+ -++.+....-..-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~----k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNL----KITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCe----EecccccccChhhHHHHH
Confidence 4699999988888766654332 4467889999999999999999999994 33322 122222111111122222
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccC--------CCCCCCcE-----------E
Q 043855 264 RSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPF--------EAGAPGSK-----------I 324 (946)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l--------~~~~~gs~-----------i 324 (946)
..+. ..=++++|.+.......-+-+..++ -..++++| |
T Consensus 99 t~Le-----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 99 TNLE-----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred hcCC-----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 2221 2224445555443211111111111 11123333 3
Q ss_pred EEEcCChhHHHhhC--CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhh
Q 043855 325 IVTTRNQGVAAIMG--TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGL 397 (946)
Q Consensus 325 ivTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~ 397 (946)
=.|||.-.+.+.+. -.-+.+++..+.+|-.++..+.|.--. -.--++.+.+|+++..|-|--+.-+-+.
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~----i~i~~~~a~eIA~rSRGTPRIAnRLLrR 226 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG----IEIDEEAALEIARRSRGTPRIANRLLRR 226 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC----CCCChHHHHHHHHhccCCcHHHHHHHHH
Confidence 35888754433222 123578899999999999888763211 1122466889999999999655444443
No 119
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.0002 Score=81.43 Aligned_cols=184 Identities=16% Similarity=0.157 Sum_probs=108.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc--c-----------------ccCCce
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRV--R-----------------DHFDLK 244 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~-----------------~~F~~~ 244 (946)
.+++|.+.-.+.+.+++.... -.+.+.++|+.|+||||+|+.++....- . +.|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 358899999999999996532 3456778999999999999998863110 0 001112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH-hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcE
Q 043855 245 AWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQ-LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSK 323 (946)
Q Consensus 245 ~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~ 323 (946)
.++..+....+ .+.+.+...+... ..+++-++|+|+++..+....+.+...+........
T Consensus 91 ~eidaas~~gv-------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 91 IEIDAASNRGI-------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEeCccCCCH-------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 22222111111 1122222222111 235677999999977665566666666654444555
Q ss_pred EEEEc-CChhHHHh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 324 IIVTT-RNQGVAAI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 324 iivTt-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
+|++| +...+... ......+.+.+++.++....+.+.+-..+- . .-.+....|++.++|.+-.+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~---id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-E---YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55544 43333322 234567899999999998888776543221 1 123556778889999776554443
No 120
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.05 E-value=3.7e-05 Score=83.84 Aligned_cols=148 Identities=16% Similarity=0.195 Sum_probs=85.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|.++..+.+..++... .-..++.++|++|+||||+|+.+++. .... ...++.+. .. .+..++.+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~-~~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CR-IDFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-cc-HHHHHHHH
Confidence 46899999999999998643 23568888999999999999999884 2222 23344443 22 11222211
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCC-ChhhHhhhhccCCCCCCCcEEEEEcCChh-HHH-hhCCC
Q 043855 264 RSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNE-SYNDWVELSHPFEAGAPGSKIIVTTRNQG-VAA-IMGTV 340 (946)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~w~~~~~~l~~~~~gs~iivTtR~~~-v~~-~~~~~ 340 (946)
..+.... ...+.+-++|+||+... .......+...+.....++++|+||.... +.. .....
T Consensus 89 ~~~~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRFASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111000 01234568899999755 22222333333444346678888886542 111 11233
Q ss_pred CcEeCCCCChHHHHHHHHH
Q 043855 341 PAYQLKKLSDHDCLALFAR 359 (946)
Q Consensus 341 ~~~~l~~L~~~e~~~Lf~~ 359 (946)
..+.+...+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4567777777777665543
No 121
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.02 E-value=1.1e-05 Score=86.86 Aligned_cols=92 Identities=17% Similarity=0.107 Sum_probs=64.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCcccH-----HHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD--FDVVRLIKVILRSFVADPNVDNRDL-----ILLQL 282 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~-----~~~~~ 282 (946)
....+.|+|++|.|||||++.+++..... +|+..+||.+.+. .++.++++.++..+-...-...... ..+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 45688999999999999999999965433 7999999999866 7899999998655433322111111 11112
Q ss_pred HHHHH-hCCceEEEEEcCCCC
Q 043855 283 QLKKQ-LSGKKFLFVLDDVWN 302 (946)
Q Consensus 283 ~l~~~-l~~kr~LlVlDdv~~ 302 (946)
..... -.|++.+|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 22222 358999999999953
No 122
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.01 E-value=1e-05 Score=85.78 Aligned_cols=288 Identities=17% Similarity=0.164 Sum_probs=172.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFD-LKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQL 288 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 288 (946)
..+-+.++|.|||||||++-.+.. ++..|. .+.+|....-.|...+.-.....++....... .....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~----~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGD----SAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccch----HHHHHHHHHH
Confidence 458899999999999999988876 556664 45556555555666655555555655443212 2233455566
Q ss_pred CCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhHHHhhCCCCcEeCCCCChH-HHHHHHHHhhcCCCC-
Q 043855 289 SGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGVAAIMGTVPAYQLKKLSDH-DCLALFARHSLGTRD- 366 (946)
Q Consensus 289 ~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~a~~~~~- 366 (946)
.++|.++|+||.... .+.-..+...+..+...-.|+.|+|..... .......+.+|+.. ++.++|...+.....
T Consensus 86 ~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 789999999997321 111222233333334445688888865332 23456777888765 788888766532211
Q ss_pred CCCchhHHHHHHHHHHhcCCChhHHHHHhhhhccCCCh-------HHHHHHHhhhcccCcccccccchhhhhhccCCChh
Q 043855 367 FSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRGHHDK-------CDWEGVLRAKIWELPEERASFIPDLAISYRHLPPT 439 (946)
Q Consensus 367 ~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~-------~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 439 (946)
......-...+..|.++..|.|++|...++..++-... +.|.-..+- ............+.+.+||.-|..-
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH
Confidence 11122234678899999999999999999888764211 122222111 0001111235778899999999999
Q ss_pred HHHHhhhhccCCCCCcccHHHHHHHHHHhCCccccCCCCcHHHHHHHHHHHHHhCcCCcccCC-CCCceEechhHHHHHH
Q 043855 440 LKQCFAYCSLFPKGYEFEEKEIILLWSAVGFLDHVQSGNASEDLGRDIFRELCARSFFQESGE-DTSGFVMHDLVNGLAQ 518 (946)
Q Consensus 440 ~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~~~l~~~~~~-~~~~~~~Hdlv~~~a~ 518 (946)
.+--|.-++.|...+.... ..|.+-|-... -+.-....-+..+++.+++..... +...|+.-+-++.++.
T Consensus 241 e~~~~~rLa~~~g~f~~~l----~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 241 ERALFGRLAVFVGGFDLGL----ALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHhcchhhhhhhhcccH----HHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999987776552 34555443210 111223344667888888755432 2233444444444443
No 123
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00022 Score=83.51 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=112.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc---------------------ccccCC
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDR---------------------VRDHFD 242 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---------------------~~~~F~ 242 (946)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+..... ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 458999999999999986532 346688999999999999988876321 011232
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCc
Q 043855 243 LKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGS 322 (946)
Q Consensus 243 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs 322 (946)
. ..+..+....+.+ +++++.++...+ ..+++-++|+|++...+...+..+...+..-...+
T Consensus 92 ~-~~ld~~~~~~vd~-Ir~li~~~~~~P-----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 92 I-HELDAASNNSVDD-IRNLIEQVRIPP-----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred e-EEecccccCCHHH-HHHHHHHHhhCc-----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 1 2222222221221 122222221111 12455688999998877677888877776544556
Q ss_pred EEEE-EcCChhHHHh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHH
Q 043855 323 KIIV-TTRNQGVAAI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKT 393 (946)
Q Consensus 323 ~iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 393 (946)
.+|+ ||+...+... ......+++.++++++....+.+.+-..+- . .-.+.+..|++.++|..--+..
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~---i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-T---AEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 6555 5454444433 334678999999999999888876543221 1 1134678899999997654433
No 124
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.00 E-value=2e-05 Score=85.31 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=37.5
Q ss_pred hhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCC-CccccccchhcCCCCcEEecCCCCchhhchh
Q 043855 588 QLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRT-LIEVLPESVNKLYKLQTLLLEDCDRLKKLCA 657 (946)
Q Consensus 588 ~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 657 (946)
.+..++.++.|++++|.++.+|. -..+|+.|.++++ .++.+|..+. .+|++|++++|..+..+|.
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 34456777777777777777662 2235666666653 3445554442 4566666666655555553
No 125
>CHL00181 cbbX CbbX; Provisional
Probab=98.00 E-value=0.00032 Score=74.36 Aligned_cols=136 Identities=12% Similarity=0.044 Sum_probs=73.6
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSG 290 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 290 (946)
...+.++|++|+||||+|+.++......+.-....|+.++. .+ +...+.+.. .......+.+. .
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~------~~~~~~~l~~a-~- 122 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT------APKTKEVLKKA-M- 122 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc------hHHHHHHHHHc-c-
Confidence 34578999999999999999976321111111122455542 12 222222211 11112223322 2
Q ss_pred ceEEEEEcCCCCC---------ChhhHhhhhccCCCCCCCcEEEEEcCChhHHHhhC--------CCCcEeCCCCChHHH
Q 043855 291 KKFLFVLDDVWNE---------SYNDWVELSHPFEAGAPGSKIIVTTRNQGVAAIMG--------TVPAYQLKKLSDHDC 353 (946)
Q Consensus 291 kr~LlVlDdv~~~---------~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~~~~~--------~~~~~~l~~L~~~e~ 353 (946)
.-+|+||++... ..+.-..+...+.....+.+||+++....+..... -...+.+++++.+|.
T Consensus 123 -ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 123 -GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred -CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 249999999642 11122223333444445567777776544432211 234689999999999
Q ss_pred HHHHHHhhcC
Q 043855 354 LALFARHSLG 363 (946)
Q Consensus 354 ~~Lf~~~a~~ 363 (946)
.+++...+-.
T Consensus 202 ~~I~~~~l~~ 211 (287)
T CHL00181 202 LQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHH
Confidence 9998877643
No 126
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00025 Score=80.56 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=110.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc---cc-----------------ccCCc
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDR---VR-----------------DHFDL 243 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~-----------------~~F~~ 243 (946)
.+++|-+..++.+...+.... -.+++.++|+.|+||||+|+.+++.-- .. .|++
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d- 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID- 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-
Confidence 458999999999999885432 345778999999999999998876310 00 0111
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHhhhhccCCCCC
Q 043855 244 KAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQ----LSGKKFLFVLDDVWNESYNDWVELSHPFEAGA 319 (946)
Q Consensus 244 ~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~ 319 (946)
++.+..+... ..+++...+... ..+++-++|+|++...+.+....++..+....
T Consensus 88 v~eldaas~~----------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp 145 (535)
T PRK08451 88 IIEMDAASNR----------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP 145 (535)
T ss_pred EEEecccccc----------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC
Confidence 1122111111 122222222110 12456689999998877777777777666545
Q ss_pred CCcEEEEEcCCh-hHHH-hhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHH
Q 043855 320 PGSKIIVTTRNQ-GVAA-IMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTL 394 (946)
Q Consensus 320 ~gs~iivTtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 394 (946)
..+++|++|.+. .+.. .......+++.+++.++....+.+.+-..+. . --++.++.|++.++|.+--+..+
T Consensus 146 ~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~---i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 146 SYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-S---YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCcHHHHHHH
Confidence 567766666553 2221 2224568999999999998888766543221 1 12356788999999988555444
No 127
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00022 Score=83.00 Aligned_cols=201 Identities=15% Similarity=0.117 Sum_probs=109.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEE-eCCCCCHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTC-VSDDFDVVRLIKVI 262 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i 262 (946)
.+++|.+..++.|.+++.... -.+.+.++|+.|+||||+|+.+++.-.-...++...|-. +....+.-..-+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 458999999999988885432 345688999999999999998886321111010000110 00000000111111
Q ss_pred HHHhcCC----CCCCcccHHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEE-EcCChhH
Q 043855 263 LRSFVAD----PNVDNRDLILLQLQLKKQ----LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIV-TTRNQGV 333 (946)
Q Consensus 263 l~~l~~~----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iiv-TtR~~~v 333 (946)
...-... ........+++...+... ..+++-++|+|+++..+....+.+...+..-...+.+|+ |++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0000000 000111123332222111 234556889999987766667777777665444555554 4444444
Q ss_pred HHh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChh-HHHH
Q 043855 334 AAI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPL-AAKT 393 (946)
Q Consensus 334 ~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~ 393 (946)
... ......+++.+++.++....+.+.+-..+. .. -.+.++.|++.++|..- |+..
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~I---~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI-QI---DADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHhCCCHHHHHHH
Confidence 432 345678999999999988877765432211 11 23567889999999654 4443
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00025 Score=83.01 Aligned_cols=198 Identities=14% Similarity=0.169 Sum_probs=110.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.++...--. ..+... ....+.-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHHHh
Confidence 458899999999999886542 23567899999999999999998742111 000000 00111111111221
Q ss_pred HHhcCC----CCCCcccHHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCC-hhHH
Q 043855 264 RSFVAD----PNVDNRDLILLQLQLKKQ----LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRN-QGVA 334 (946)
Q Consensus 264 ~~l~~~----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~-~~v~ 334 (946)
.....+ ........+.+...+... ..+++-++|+|++...+...+..+...+......+.+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 111000 000111222222222111 1245568999999877766777777776654444555544443 3333
Q ss_pred H-hhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 335 A-IMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 335 ~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
. .......+++.+++.++....+.+.+-..+. ... .+....|++.++|.+..+..+.
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~is---~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-EIE---PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2 2234567888999999888777765532211 111 2457789999999886554443
No 129
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=6.7e-06 Score=59.07 Aligned_cols=33 Identities=36% Similarity=0.464 Sum_probs=16.4
Q ss_pred CCcEEeccCCCccccccchhcCCCCcEEecCCC
Q 043855 617 HLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDC 649 (946)
Q Consensus 617 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 649 (946)
+|++|++++|.|+.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455555555555555544555555555555555
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00023 Score=80.44 Aligned_cols=182 Identities=14% Similarity=0.167 Sum_probs=106.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc---------------------ccCC
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVR---------------------DHFD 242 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---------------------~~F~ 242 (946)
.+++|.+..++.+.+++.... -.+.+.++|+.|+||||+|+.+++...-. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999886432 24678899999999999999997631100 0111
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH-HHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCC
Q 043855 243 LKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLK-KQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPG 321 (946)
Q Consensus 243 ~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~g 321 (946)
.+++.......+ .+..++...+. .-..+++-++|+|++...+....+.+...+......
T Consensus 92 -~~~i~g~~~~gi-------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 92 -VLEIDGASHRGI-------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred -eEEeeccccCCH-------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 111111111111 11122221111 112356678999999766555556666666554445
Q ss_pred cEEEEEcCC-hhHHH-hhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChh-HHHHH
Q 043855 322 SKIIVTTRN-QGVAA-IMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPL-AAKTL 394 (946)
Q Consensus 322 s~iivTtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~ 394 (946)
..+|++|.. ..+.. .......+++.++++++....+...+-..+. . --.+.++.|++.++|.+- |+..+
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~---i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-E---TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666665533 33322 2234567999999999998888776532211 1 123567889999999764 44433
No 131
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=7.9e-06 Score=58.71 Aligned_cols=40 Identities=30% Similarity=0.460 Sum_probs=28.3
Q ss_pred CceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccc
Q 043855 593 QRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLP 632 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp 632 (946)
++|++|++++|.++.+|..+++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777766777777777777777777654
No 132
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.94 E-value=5.5e-05 Score=82.88 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=73.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.++++.++..+.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||+++..++..+.+...
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 45888899999999988643 567889999999999999999865445678889999999988877665322
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHhC--CceEEEEEcCCCCCChh
Q 043855 264 RSFVADPNVDNRDLILLQLQLKKQLS--GKKFLFVLDDVWNESYN 306 (946)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~ 306 (946)
......-..........+..... ++++++|+|++...+..
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~ 287 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS 287 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH
Confidence 11100000000111122222222 46899999999765543
No 133
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.92 E-value=0.00011 Score=74.81 Aligned_cols=161 Identities=15% Similarity=0.167 Sum_probs=92.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF--DLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQ 287 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 287 (946)
....+.|+|..|+|||.|.+++++. ..... ..+++++ ..+....+...+... ... .+.+.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~------~~~----~~~~~ 94 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFADALRDG------EIE----EFKDR 94 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHHHHHTT------SHH----HHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHHHHHcc------cch----hhhhh
Confidence 4456899999999999999999984 32221 1244443 345555565555431 122 23333
Q ss_pred hCCceEEEEEcCCCCCCh-hhHhhh----hccCCCCCCCcEEEEEcCCh---------hHHHhhCCCCcEeCCCCChHHH
Q 043855 288 LSGKKFLFVLDDVWNESY-NDWVEL----SHPFEAGAPGSKIIVTTRNQ---------GVAAIMGTVPAYQLKKLSDHDC 353 (946)
Q Consensus 288 l~~kr~LlVlDdv~~~~~-~~w~~~----~~~l~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~ 353 (946)
++ .-=+|+|||++.... ..|.+. ...+. ..|.+||+|++.. ++...+....+++++++++++.
T Consensus 95 ~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r 171 (219)
T PF00308_consen 95 LR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDR 171 (219)
T ss_dssp HC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHH
T ss_pred hh-cCCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHH
Confidence 44 334788999966432 234332 22222 2466899999653 3334445566899999999999
Q ss_pred HHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 354 LALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 354 ~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
.+++.+.+....- . --+++.+-|++.+.+..-.+..+-
T Consensus 172 ~~il~~~a~~~~~-~---l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 172 RRILQKKAKERGI-E---LPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHHHHHHhCC-C---CcHHHHHHHHHhhcCCHHHHHHHH
Confidence 9999988754322 1 224667778877776655544433
No 134
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.90 E-value=3.4e-07 Score=101.76 Aligned_cols=77 Identities=26% Similarity=0.228 Sum_probs=54.9
Q ss_pred CCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccc-cCCCCCCcccCce
Q 043855 617 HLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIG-IGKLTSLQTLCSF 695 (946)
Q Consensus 617 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~ 695 (946)
.|.+.+.++|.+..+-.++.-++.|+.|||++| ++.... .+..|++|+|||+++|. +..+|.- ...+ .|+.|.+.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeec
Confidence 466677777777777777778888999999988 666654 67788889999998887 7777752 2222 26666554
Q ss_pred ec
Q 043855 696 VV 697 (946)
Q Consensus 696 ~~ 697 (946)
++
T Consensus 241 nN 242 (1096)
T KOG1859|consen 241 NN 242 (1096)
T ss_pred cc
Confidence 44
No 135
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.89 E-value=0.00012 Score=89.08 Aligned_cols=179 Identities=12% Similarity=0.136 Sum_probs=95.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc------CCceEE-EEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDH------FDLKAW-TCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------F~~~~w-v~~~~~~~~~ 256 (946)
..++||+.++.++++.|.... ..-+.++|++|+||||+|+.+++. +... ....+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~----- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGL----- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhh-----
Confidence 468999999999999986542 234569999999999999999973 2111 122333 22211
Q ss_pred HHHHHHHHHhcCCCCCCcccH-HHHHHHHHHHh-CCceEEEEEcCCCCCC-------hhhHhh-hhccCCCCCCCcEEEE
Q 043855 257 RLIKVILRSFVADPNVDNRDL-ILLQLQLKKQL-SGKKFLFVLDDVWNES-------YNDWVE-LSHPFEAGAPGSKIIV 326 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~-~~~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~w~~-~~~~l~~~~~gs~iiv 326 (946)
+..... ...+. ..+...+.+.- .+++.+|++|++.... ..+-.. +...+.. ..-++|-
T Consensus 254 ---------l~ag~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~Ig 321 (852)
T TIGR03345 254 ---------LQAGAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIA 321 (852)
T ss_pred ---------hhcccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEE
Confidence 000000 11111 12222222222 2468999999985431 111111 2222221 2345666
Q ss_pred EcCChhHHHh-------hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCC
Q 043855 327 TTRNQGVAAI-------MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGL 387 (946)
Q Consensus 327 TtR~~~v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~Gl 387 (946)
||...+.... ......+.+++++.++..+++....-.-.......--.+....+++.+.++
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 6665433221 123468999999999999997544321111011111234455666666554
No 136
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.88 E-value=0.00022 Score=75.14 Aligned_cols=161 Identities=13% Similarity=0.116 Sum_probs=80.8
Q ss_pred ccccchhHHHHHHHHHhc---------CCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCH
Q 043855 185 HVYGREIEKKEIVELLLR---------DDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDV 255 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 255 (946)
.++|.+..+++|.+.... ......+....+.++|++|+||||+|+.+++...-.+.-....++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 478988877666543211 1101123456788999999999999999986311001111112333322
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCC--------hhhHhhhhccCCCCCCCcEEEEE
Q 043855 256 VRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNES--------YNDWVELSHPFEAGAPGSKIIVT 327 (946)
Q Consensus 256 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~w~~~~~~l~~~~~gs~iivT 327 (946)
.++ .....++ ........+.+. ..-+|++|++.... ......+...+........+|++
T Consensus 83 ~~l----~~~~~g~------~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 83 ADL----VGEYIGH------TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred HHh----hhhhccc------hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 111 1111111 111122222222 13488999996421 11223344444333333355566
Q ss_pred cCChhHHH-------hhCC-CCcEeCCCCChHHHHHHHHHhhc
Q 043855 328 TRNQGVAA-------IMGT-VPAYQLKKLSDHDCLALFARHSL 362 (946)
Q Consensus 328 tR~~~v~~-------~~~~-~~~~~l~~L~~~e~~~Lf~~~a~ 362 (946)
+...+... .... ...+.+++++.++..+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 54433211 1111 23578999999999999887664
No 137
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00052 Score=79.79 Aligned_cols=193 Identities=17% Similarity=0.146 Sum_probs=107.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|.+..++.+.+++.... -.+.+.++|+.|+||||+|+.+...---...-+ ..+.+.-..-+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999986542 346677899999999999999976311000000 00001001111111
Q ss_pred HHh-------cCCCCCCcccHHHHHHHHHH-HhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEE-EcCChhHH
Q 043855 264 RSF-------VADPNVDNRDLILLQLQLKK-QLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIV-TTRNQGVA 334 (946)
Q Consensus 264 ~~l-------~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iiv-TtR~~~v~ 334 (946)
... .........+..++...+.. -..+++-++|+|++...+...+..+...+........+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 000 00000011112222222211 1235667889999987776677777766654434445554 44443333
Q ss_pred Hh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHH
Q 043855 335 AI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAK 392 (946)
Q Consensus 335 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 392 (946)
.. ......+++.+++.++....+...+-..+- .. -.+..+.|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi-~i---~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGI-EY---EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHH
Confidence 22 234567889999999998888776532221 11 13557788888988775443
No 138
>PF14516 AAA_35: AAA-like domain
Probab=97.86 E-value=0.0023 Score=69.67 Aligned_cols=201 Identities=13% Similarity=0.121 Sum_probs=116.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC-----CCHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD-----FDVVRL 258 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~~ 258 (946)
+..|+|...-+++.+.|.+. ...+.|.|+-.+|||+|...+.+..+.. .+ ..+++++..- .+..+.
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHH
Confidence 34568886667777777543 3689999999999999999998743332 33 3456776542 245655
Q ss_pred HHHHHHHhcCCCCCC----------cccHHHHHHHHHHHh---CCceEEEEEcCCCCCCh-----hhHhh-hhccCCCCC
Q 043855 259 IKVILRSFVADPNVD----------NRDLILLQLQLKKQL---SGKKFLFVLDDVWNESY-----NDWVE-LSHPFEAGA 319 (946)
Q Consensus 259 ~~~il~~l~~~~~~~----------~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~-----~~w~~-~~~~l~~~~ 319 (946)
++.+...+...-... ..........+.+++ .+++.+|+||+++..-. .++-. ++.......
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 655555443322110 111122233344432 25899999999964311 11212 111111100
Q ss_pred ----CCc-E-EEEEcCChhHHHh-----hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 043855 320 ----PGS-K-IIVTTRNQGVAAI-----MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLP 388 (946)
Q Consensus 320 ----~gs-~-iivTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlP 388 (946)
... + |++.+........ +.....++|++++.+|...|..++-.. .. ....++|...++|+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~---~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FS---QEQLEQLMDWTGGHP 233 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CC---HHHHHHHHHHHCCCH
Confidence 111 1 2222211111111 112347899999999999999876322 11 123889999999999
Q ss_pred hHHHHHhhhhccC
Q 043855 389 LAAKTLGGLLRGH 401 (946)
Q Consensus 389 Lai~~~~~~l~~~ 401 (946)
.-+..++..+..+
T Consensus 234 ~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 234 YLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999764
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00065 Score=78.63 Aligned_cols=195 Identities=16% Similarity=0.130 Sum_probs=111.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|-+..++.|..++.... -.+.+.++|+.|+||||+|+.+++..--...... ..+....+- +.|.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 468999999999999996542 3467889999999999999999874211100000 000000000 0010
Q ss_pred HH-------hcCCCCCCcccHHHHHHHHHH-HhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCC-hhHH
Q 043855 264 RS-------FVADPNVDNRDLILLQLQLKK-QLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRN-QGVA 334 (946)
Q Consensus 264 ~~-------l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~-~~v~ 334 (946)
.. +.+.......+..++...+.. -..+++-++|+|++...+...+..+...+......+.+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 00 000000011112222221111 12356668999999877766777787777654456666665543 3343
Q ss_pred Hh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHH
Q 043855 335 AI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTL 394 (946)
Q Consensus 335 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 394 (946)
.. ......+++.+++.++..+.+.+.+...+- +--.+....|++.++|.+-.+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi----~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI----KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 234567899999999998888876643221 112356777899999987544443
No 140
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.86 E-value=0.00055 Score=70.91 Aligned_cols=197 Identities=19% Similarity=0.148 Sum_probs=118.2
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 043855 192 EKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRD----HFDLKAWTCVSDDFDVVRLIKVILRSFV 267 (946)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~ 267 (946)
.++++.++|..+. ..+..-+.|||.+|.|||++++.++...-... .--.++.|.+....+...++..|+.+++
T Consensus 45 ~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 45 ALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 4455666665543 35667899999999999999999996432111 1125778888899999999999999998
Q ss_pred CCCCCCcccHHHHHHHHHHHhCC-ceEEEEEcCCCCC---ChhhHhhh---hccCCCCCCCcEEEEEcCChhHHHh----
Q 043855 268 ADPNVDNRDLILLQLQLKKQLSG-KKFLFVLDDVWNE---SYNDWVEL---SHPFEAGAPGSKIIVTTRNQGVAAI---- 336 (946)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~---~~~~w~~~---~~~l~~~~~gs~iivTtR~~~v~~~---- 336 (946)
.... .......+.......++. +-=+||+|++.+. +..+-..+ ...+.+.-.=+-|.+-|+.---+-.
T Consensus 122 aP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 122 APYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred cccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 8765 344455555555555543 4558999999652 11112222 2223232234456666654222111
Q ss_pred -hCCCCcEeCCCCCh-HHHHHHHHHh--hcCCCCCCCchhHHHHHHHHHHhcCCChhHHHH
Q 043855 337 -MGTVPAYQLKKLSD-HDCLALFARH--SLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKT 393 (946)
Q Consensus 337 -~~~~~~~~l~~L~~-~e~~~Lf~~~--a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 393 (946)
.....++.+..-.. +|...|+... +.+-..++. -..+++++.|...++|+.=-+..
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHHHH
Confidence 11234566666654 4555665432 222222222 23468899999999998744433
No 141
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.84 E-value=0.00043 Score=73.40 Aligned_cols=134 Identities=12% Similarity=0.077 Sum_probs=72.3
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGK 291 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 291 (946)
.-+.++|++|+||||+|+.++.-....+......|+.++. . +++..+.+.. .......+.+. .
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~------~~~~~~~~~~a---~ 121 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT------APKTKEILKRA---M 121 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc------hHHHHHHHHHc---c
Confidence 3678999999999999987775321111111123444442 1 2222222211 11122223222 2
Q ss_pred eEEEEEcCCCCC---------ChhhHhhhhccCCCCCCCcEEEEEcCChhHHHhhC--------CCCcEeCCCCChHHHH
Q 043855 292 KFLFVLDDVWNE---------SYNDWVELSHPFEAGAPGSKIIVTTRNQGVAAIMG--------TVPAYQLKKLSDHDCL 354 (946)
Q Consensus 292 r~LlVlDdv~~~---------~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~~~~~--------~~~~~~l~~L~~~e~~ 354 (946)
.-+|+||++... ....+..+...+.....+.+||+++.......... -...+.+++++.+|..
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 358999999632 11223344444444445567777765443322211 1346899999999999
Q ss_pred HHHHHhhc
Q 043855 355 ALFARHSL 362 (946)
Q Consensus 355 ~Lf~~~a~ 362 (946)
+++...+-
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 99887653
No 142
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.83 E-value=0.00042 Score=78.36 Aligned_cols=169 Identities=14% Similarity=0.073 Sum_probs=98.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSG 290 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 290 (946)
...+.|+|..|+|||+|++++.+.......-..++++ +..++...+...+.... +. ...+.+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-------~~-~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH-------KE-IEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-------hH-HHHHHHHhc-
Confidence 3568999999999999999999832111111123333 33456666666654211 11 122333333
Q ss_pred ceEEEEEcCCCCCCh-hhHh-hhhccCCC-CCCCcEEEEEcCCh---------hHHHhhCCCCcEeCCCCChHHHHHHHH
Q 043855 291 KKFLFVLDDVWNESY-NDWV-ELSHPFEA-GAPGSKIIVTTRNQ---------GVAAIMGTVPAYQLKKLSDHDCLALFA 358 (946)
Q Consensus 291 kr~LlVlDdv~~~~~-~~w~-~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 358 (946)
+.-+|||||+..... ..|. .+...+.. ...|..||+|+... .+...+...-++.+++++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 334888999965431 1222 22222211 12344688887643 223333445678899999999999999
Q ss_pred HhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhh
Q 043855 359 RHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGG 396 (946)
Q Consensus 359 ~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 396 (946)
+++-..+- . ..--+++..-|++.++|.|-.+.-+..
T Consensus 286 ~~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 286 KEIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 88743221 0 112247788999999999877655543
No 143
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00048 Score=80.46 Aligned_cols=195 Identities=17% Similarity=0.181 Sum_probs=108.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|.+.-++.|.+++.... -.+.+.++|+.|+||||+|+.+++...-....+ ...++.-..-++|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999886532 346678999999999999999886311000000 00000000000000
Q ss_pred HH-------hcCCCCCCcccHHHHHHHHHHH-hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEE-EcCChhHH
Q 043855 264 RS-------FVADPNVDNRDLILLQLQLKKQ-LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIV-TTRNQGVA 334 (946)
Q Consensus 264 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iiv-TtR~~~v~ 334 (946)
.. +.+.......+..++...+... ..+++-++|+|++...+......+...+......+.+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000000111222222222111 134556899999987766667777766655444556554 55444454
Q ss_pred Hh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCCh-hHHHHH
Q 043855 335 AI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLP-LAAKTL 394 (946)
Q Consensus 335 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlP-Lai~~~ 394 (946)
.. ......+++.+++.++....+...+-..+- . --.+....|++.++|.. .|+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-~---i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI-S---ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 32 234567899999999988877765432211 1 11355678899999866 444444
No 144
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.81 E-value=0.00093 Score=70.08 Aligned_cols=165 Identities=21% Similarity=0.249 Sum_probs=104.4
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHH
Q 043855 183 EAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVI 262 (946)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 262 (946)
++.+.+|+.++..+...+...+. .-++.|.|.|.+|.|||.+.+++.+... . ..+|+++-+.++.+-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n--~---~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN--L---ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC--C---cceeeehHHhccHHHHHHHH
Confidence 45688999999999998865531 3456779999999999999999998542 2 35899999999999999999
Q ss_pred HHHhc-CCCCCCc-----ccHHHHHHHHHH--HhC--CceEEEEEcCCCCCChhhHhh--------hhccCCCCCCCcEE
Q 043855 263 LRSFV-ADPNVDN-----RDLILLQLQLKK--QLS--GKKFLFVLDDVWNESYNDWVE--------LSHPFEAGAPGSKI 324 (946)
Q Consensus 263 l~~l~-~~~~~~~-----~~~~~~~~~l~~--~l~--~kr~LlVlDdv~~~~~~~w~~--------~~~~l~~~~~gs~i 324 (946)
+.+.. .+.+... .........+.+ ... ++.++||||++..-. +.+. +-..++ .+ .-+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--D~~a~ll~~l~~L~el~~--~~-~i~ 151 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--DMDAILLQCLFRLYELLN--EP-TIV 151 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--ccchHHHHHHHHHHHHhC--CC-ceE
Confidence 99985 2222111 112222222332 122 468999999995421 1111 111111 12 233
Q ss_pred EEEcCCh--hHHH-hhCCC--CcEeCCCCChHHHHHHHHHh
Q 043855 325 IVTTRNQ--GVAA-IMGTV--PAYQLKKLSDHDCLALFARH 360 (946)
Q Consensus 325 ivTtR~~--~v~~-~~~~~--~~~~l~~L~~~e~~~Lf~~~ 360 (946)
|+++-.. ..-. .+++. .++....-+.+|..+++.+.
T Consensus 152 iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 152 IILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 4443332 2211 13433 35677888999999998763
No 145
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00054 Score=73.87 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=67.4
Q ss_pred CceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh-hHH-HhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCC
Q 043855 290 GKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ-GVA-AIMGTVPAYQLKKLSDHDCLALFARHSLGTRDF 367 (946)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~ 367 (946)
+++-++|+|++...+......+...+..-..++.+|+||.+. .+. ........+.+.+++.+++.+.+.... +..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC--
Confidence 444556789998888778888877776555667777777665 333 223456789999999999998887653 111
Q ss_pred CCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 368 SSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 368 ~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
. .+.+..++..++|.|+.+..+.
T Consensus 182 -~----~~~~~~~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 182 -D----ERERIELLTLAGGSPLRALQLH 204 (328)
T ss_pred -C----hHHHHHHHHHcCCCHHHHHHHH
Confidence 1 2335577889999998665553
No 146
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.80 E-value=1.9e-06 Score=76.20 Aligned_cols=96 Identities=21% Similarity=0.273 Sum_probs=48.3
Q ss_pred eeEEEecCCCCccCCcc---ccCCCCCcEEeccCCCccccccchhc-CCCCcEEecCCCCchhhchhhhcccCccCeeec
Q 043855 595 LRVFSLCGYEIFELPDS---IGELRHLRYLNLSRTLIEVLPESVNK-LYKLQTLLLEDCDRLKKLCASLGNLINLHHLNN 670 (946)
Q Consensus 595 Lr~L~L~~~~~~~lp~~---i~~l~~Lr~L~Ls~~~i~~lp~~i~~-L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 670 (946)
+..|||+.|.+-.+++. +....+|...+|++|.++.+|+.|.. .+.+++|+|++| .+.++|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhccc
Confidence 34455555544433322 23444555555555555555555443 235555555555 55555555555555555555
Q ss_pred CCCCCccccccccCCCCCCccc
Q 043855 671 SNTDSLEEMPIGIGKLTSLQTL 692 (946)
Q Consensus 671 ~~~~~~~~~p~~i~~l~~L~~L 692 (946)
+.|. +...|.-|..|.+|-.|
T Consensus 108 ~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 108 RFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred ccCc-cccchHHHHHHHhHHHh
Confidence 5555 44445444444444444
No 147
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.80 E-value=0.00018 Score=87.10 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=85.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc---cccccC-CceEEEEeCCCCCHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDD---RVRDHF-DLKAWTCVSDDFDVVRLI 259 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~~F-~~~~wv~~~~~~~~~~~~ 259 (946)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.+++.. .+...+ ...+|. + +...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh
Confidence 359999999999999886542 2345699999999999999999742 111111 233442 1 111111
Q ss_pred HHHHHHhcCCCCCCcccHHHH-HHHHHHHhCCceEEEEEcCCCCCC---------hhhHhhhhccCCCCCCC-cEEEEEc
Q 043855 260 KVILRSFVADPNVDNRDLILL-QLQLKKQLSGKKFLFVLDDVWNES---------YNDWVELSHPFEAGAPG-SKIIVTT 328 (946)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~~-~~~l~~~l~~kr~LlVlDdv~~~~---------~~~w~~~~~~l~~~~~g-s~iivTt 328 (946)
.. .. ...+.+.. ...+.+.-+.++.+|++|++..-. .+.-+-+...+. .| -++|-+|
T Consensus 251 ----a~---~~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaT 318 (731)
T TIGR02639 251 ----AG---TK--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGST 318 (731)
T ss_pred ----hh---cc--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEec
Confidence 10 00 01122222 222222223468899999986321 111122233232 23 3455555
Q ss_pred CChhHHH-------hhCCCCcEeCCCCChHHHHHHHHHhh
Q 043855 329 RNQGVAA-------IMGTVPAYQLKKLSDHDCLALFARHS 361 (946)
Q Consensus 329 R~~~v~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~a 361 (946)
...+... .......+.+++++.++..+++....
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 5432211 11234578999999999999998644
No 148
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.79 E-value=0.0002 Score=72.75 Aligned_cols=183 Identities=16% Similarity=0.165 Sum_probs=111.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEE-EEeCCCCCHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAW-TCVSDDFDVVRLIKVI 262 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~w-v~~~~~~~~~~~~~~i 262 (946)
.+++|-+..+.-|.+.+.. ....+...+|++|.|||+-|..++...--...|.+++- .++|..-... +.++
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-
Confidence 4588988888888888865 25688999999999999999888874322344554442 2333322111 1110
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHhC--Cce-EEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCC-hhHHHh-h
Q 043855 263 LRSFVADPNVDNRDLILLQLQLKKQLS--GKK-FLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRN-QGVAAI-M 337 (946)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr-~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~-~~v~~~-~ 337 (946)
...+...+.....+... -++ -.+|||+++....+.|..++..+......++.|+.+.. ..+... .
T Consensus 108 ----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 108 ----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 00111111100000000 123 47889999998899999998888776666775554443 322221 1
Q ss_pred CCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 043855 338 GTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLP 388 (946)
Q Consensus 338 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlP 388 (946)
....-+..++|.+++..+-+...+-..+-.. -.+..+.|++.++|.-
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~----d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGVDI----DDDALKLIAKISDGDL 224 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCcH
Confidence 2345688999999999888887765433222 2355678888888853
No 149
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.77 E-value=0.00015 Score=80.77 Aligned_cols=180 Identities=14% Similarity=0.116 Sum_probs=97.3
Q ss_pred cccccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCC
Q 043855 182 NEAHVYGREIEKKEIVELLLRDDL-------MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFD 254 (946)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 254 (946)
...++.|+++.++++.+.+...-. .+-..++-|.++|++|+|||++|+++++. .... |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh---
Confidence 345789999999999887642110 01134567889999999999999999983 3222 222221
Q ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCC-----------hhhHhhhhccC---C--CC
Q 043855 255 VVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNES-----------YNDWVELSHPF---E--AG 318 (946)
Q Consensus 255 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~w~~~~~~l---~--~~ 318 (946)
.+ +.....+ .....+...+...-...+.+|+|||++... ...+..+...+ . ..
T Consensus 199 -~~----l~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 -SE----LVQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -HH----HhHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 11 1111111 111112222222223567899999996420 11111121111 1 11
Q ss_pred CCCcEEEEEcCChhHHH-hh-C---CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCC
Q 043855 319 APGSKIIVTTRNQGVAA-IM-G---TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGL 387 (946)
Q Consensus 319 ~~gs~iivTtR~~~v~~-~~-~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~Gl 387 (946)
..+..||.||...+... .+ . -...+.+++.+.++-.++|..+..+..- ..... ...+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCC
Confidence 23556777877643221 11 1 1346899999999999999887643221 11122 34566666664
No 150
>PRK06620 hypothetical protein; Validated
Probab=97.74 E-value=0.00029 Score=71.18 Aligned_cols=136 Identities=16% Similarity=0.096 Sum_probs=79.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGK 291 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 291 (946)
+.+.|+|++|+|||+|++.+++... .. ++. ..+.. . +.. +.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~~-----~~~--~~~~~-----------------~------------~~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--AY-----IIK--DIFFN-----------------E------------EIL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--CE-----Ecc--hhhhc-----------------h------------hHH-hc
Confidence 6789999999999999999887432 11 111 10000 0 011 12
Q ss_pred eEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChh-------HHHhhCCCCcEeCCCCChHHHHHHHHHhhcCC
Q 043855 292 KFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQG-------VAAIMGTVPAYQLKKLSDHDCLALFARHSLGT 364 (946)
Q Consensus 292 r~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~-------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~ 364 (946)
.-++++||+..........+...+. ..|..||+|++... ....+....+++++++++++-..++.+.+...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 3478899996321111122222222 24668899887532 23334455689999999999888887765422
Q ss_pred CCCCCchhHHHHHHHHHHhcCCChhHHH
Q 043855 365 RDFSSHKSLEKIGREIVTKCDGLPLAAK 392 (946)
Q Consensus 365 ~~~~~~~~l~~~~~~i~~~~~GlPLai~ 392 (946)
... --+++.+-|++.+.|.--.+.
T Consensus 164 -~l~---l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 -SVT---ISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred -CCC---CCHHHHHHHHHHccCCHHHHH
Confidence 111 124677788888877654443
No 151
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.70 E-value=0.0008 Score=75.89 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=89.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF--DLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQL 288 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 288 (946)
...+.|+|++|+|||+|++++++. +.... ..++++++ .++..++...+... ..... .+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~~----~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN------KMEEF----KEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC------CHHHH----HHHH
Confidence 456899999999999999999984 32222 23445543 33444555554321 12222 2223
Q ss_pred CCceEEEEEcCCCCCChh-hH-hhhhccCCC-CCCCcEEEEEcCCh-h--------HHHhhCCCCcEeCCCCChHHHHHH
Q 043855 289 SGKKFLFVLDDVWNESYN-DW-VELSHPFEA-GAPGSKIIVTTRNQ-G--------VAAIMGTVPAYQLKKLSDHDCLAL 356 (946)
Q Consensus 289 ~~kr~LlVlDdv~~~~~~-~w-~~~~~~l~~-~~~gs~iivTtR~~-~--------v~~~~~~~~~~~l~~L~~~e~~~L 356 (946)
++ .-+|||||+...... .+ +.+...+.. ...|..+|+|+... . +...+.....+.+.+.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 22 348899999653211 11 122222211 01345678877642 1 122222334689999999999999
Q ss_pred HHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHH
Q 043855 357 FARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAA 391 (946)
Q Consensus 357 f~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 391 (946)
+.+.+-.... .. -+++...|++.+.|.+-.+
T Consensus 277 l~~~~~~~~~-~l---~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 277 LQKKAEEEGL-EL---PDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHcCC-CC---CHHHHHHHHHhcCCCHHHH
Confidence 9888754321 11 2466778888888876543
No 152
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0013 Score=70.46 Aligned_cols=197 Identities=13% Similarity=0.095 Sum_probs=112.3
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc-------------cccCCceEEEEeCC
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRV-------------RDHFDLKAWTCVSD 251 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~~~~ 251 (946)
+++|.+..++.+...+.... -.+...++|+.|+||+++|..+++.--- ...+.-..|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 58999999999999986542 3478999999999999999888753100 11122234443210
Q ss_pred CCCHHHHHHHHHHHhcCC-CCCCcccHHHHHHHHHHHh-----CCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEE
Q 043855 252 DFDVVRLIKVILRSFVAD-PNVDNRDLILLQLQLKKQL-----SGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKII 325 (946)
Q Consensus 252 ~~~~~~~~~~il~~l~~~-~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~ii 325 (946)
..+-..+-.+-++..+.. .....-..+++. .+.+.+ .+++-++|+|++...+......+...+..-. .+.+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 000000000111111100 000111222222 233333 3567799999998777667777777665444 34555
Q ss_pred EEc-CChhHHH-hhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 326 VTT-RNQGVAA-IMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 326 vTt-R~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
++| ....+.. .......+++.++++++..+.+.+...... .......++..++|.|..+..+.
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHHH
Confidence 444 4433333 234567899999999999999987642111 01113578899999997665543
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.64 E-value=0.00031 Score=86.07 Aligned_cols=154 Identities=18% Similarity=0.176 Sum_probs=85.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc---ccccC-CceEEEEeCCCCCHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDR---VRDHF-DLKAWTCVSDDFDVVRLI 259 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~~~~~~~~~~~ 259 (946)
..++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... ...+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 358999999999999996542 23456999999999999999987421 11111 234452 1 222211
Q ss_pred HHHHHHhcCCCCCCcccHHH-HHHHHHHHhCCceEEEEEcCCCCCC-------hhhHhhh-hccCCCCCCCcEEEEEcCC
Q 043855 260 KVILRSFVADPNVDNRDLIL-LQLQLKKQLSGKKFLFVLDDVWNES-------YNDWVEL-SHPFEAGAPGSKIIVTTRN 330 (946)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~~-------~~~w~~~-~~~l~~~~~gs~iivTtR~ 330 (946)
.+... ..+.++ +...+.+.-..++.+|++|++.... ..+-..+ ...+.. ..-++|.+|..
T Consensus 248 -------ag~~~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~ 316 (821)
T CHL00095 248 -------AGTKY--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTL 316 (821)
T ss_pred -------ccCCC--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCH
Confidence 11111 112222 2233333334568999999994210 0011122 222221 12456666665
Q ss_pred hhHHHh-------hCCCCcEeCCCCChHHHHHHHHH
Q 043855 331 QGVAAI-------MGTVPAYQLKKLSDHDCLALFAR 359 (946)
Q Consensus 331 ~~v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~ 359 (946)
.+.... ......+.+...+.++...++..
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 544322 12345688889999998888764
No 154
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=9.4e-06 Score=81.31 Aligned_cols=203 Identities=20% Similarity=0.205 Sum_probs=104.8
Q ss_pred ccCceeEEEecCCCCccCC---ccccCCCCCcEEeccCCCccccccch-hcCCCCcEEecCCCCc-hhhchhhhcccCcc
Q 043855 591 RLQRLRVFSLCGYEIFELP---DSIGELRHLRYLNLSRTLIEVLPESV-NKLYKLQTLLLEDCDR-LKKLCASLGNLINL 665 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp---~~i~~l~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L~L~~~~~-l~~lp~~i~~L~~L 665 (946)
.++.++.|||.+|.++... ..+.+|++|++|+|+.|.+..--.+. ..+.||++|-|.++.. .+.....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 6777888888888776432 33467888888888887654221122 2456788888877632 13333445666777
Q ss_pred CeeecCCCCCcccccc---ccCCC-CCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCccc
Q 043855 666 HHLNNSNTDSLEEMPI---GIGKL-TSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKK 741 (946)
Q Consensus 666 ~~L~l~~~~~~~~~p~---~i~~l-~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~ 741 (946)
+.|.++.|+ ...+-. .+... +.+.+|+.. +.+..+ -+++.++ -.-.+
T Consensus 149 telHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~-------------~c~~~~--w~~~~~l-------------~r~Fp 199 (418)
T KOG2982|consen 149 TELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQL-------------PCLEQL--WLNKNKL-------------SRIFP 199 (418)
T ss_pred hhhhhccch-hhhhccccccccccchhhhhhhcC-------------CcHHHH--HHHHHhH-------------Hhhcc
Confidence 777776664 211100 00000 011111110 000000 0001000 11235
Q ss_pred ccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC---
Q 043855 742 NLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP--- 818 (946)
Q Consensus 742 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--- 818 (946)
++..+.+..|...+ ...-....++|.+.-|.|..+.+.+..+.-.-..|+.|..|.++++++++.+.
T Consensus 200 nv~sv~v~e~PlK~----------~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~e 269 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKT----------ESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGE 269 (418)
T ss_pred cchheeeecCcccc----------hhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCc
Confidence 55666665543332 12233445566666777776654433221111267888888888888876553
Q ss_pred ----CCCCCCCCceeeec
Q 043855 819 ----SVGQLPSLKHLVVR 832 (946)
Q Consensus 819 ----~l~~l~~L~~L~L~ 832 (946)
.++.|++++.|+=+
T Consensus 270 rr~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 270 RRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ceEEEEeeccceEEecCc
Confidence 25667777777643
No 155
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.60 E-value=0.0021 Score=64.51 Aligned_cols=125 Identities=23% Similarity=0.269 Sum_probs=70.2
Q ss_pred ccccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 181 VNEAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 181 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
+.-.+++|.+.+++.|++-...-- ......-+.++|..|.|||++++++.+...-++ .+ -|.+...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k~-------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSKE-------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECHH--------
Confidence 445679999999999886443211 112345677899999999999999998432222 11 1223221
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCC-ChhhHhhhhccCCCC---CC-CcEEEEEcCChhH
Q 043855 261 VILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNE-SYNDWVELSHPFEAG---AP-GSKIIVTTRNQGV 333 (946)
Q Consensus 261 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~w~~~~~~l~~~---~~-gs~iivTtR~~~v 333 (946)
+..+...+...++. +..||+|++||+.=+ .......+++.+..+ .+ ...|..||..++.
T Consensus 90 ------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 ------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred ------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 11223333333331 357999999998422 223455555554322 12 2334445544444
No 156
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=1.2e-05 Score=80.47 Aligned_cols=211 Identities=20% Similarity=0.160 Sum_probs=115.5
Q ss_pred ccCceeEEEecCCCCccCCc--cc-cCCCCCcEEeccCCCccc---cccchhcCCCCcEEecCCCCc---hhhchhhhcc
Q 043855 591 RLQRLRVFSLCGYEIFELPD--SI-GELRHLRYLNLSRTLIEV---LPESVNKLYKLQTLLLEDCDR---LKKLCASLGN 661 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp~--~i-~~l~~Lr~L~Ls~~~i~~---lp~~i~~L~~L~~L~L~~~~~---l~~lp~~i~~ 661 (946)
..+-+..|.+.++.|...-. .| ..+.+++.|||.+|.|+. +-..+.+||.|++|+|+.|.. ++.+| ..
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p 119 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LP 119 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---cc
Confidence 33445577777887764322 23 457899999999999873 334466899999999998832 23333 34
Q ss_pred cCccCeeecCCCCCc-cccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcc
Q 043855 662 LINLHHLNNSNTDSL-EEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGK 740 (946)
Q Consensus 662 L~~L~~L~l~~~~~~-~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~ 740 (946)
+++|+.|-+.|+..- ......+..++.++.|++..+ ++| .+++..- +.... -
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N---------------~~r-q~n~Dd~----c~e~~-------s 172 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN---------------SLR-QLNLDDN----CIEDW-------S 172 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc---------------hhh-hhccccc----ccccc-------c
Confidence 678899888876521 122222445555555544222 111 1111000 00000 0
Q ss_pred cccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCC--CCCCC
Q 043855 741 KNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGM--CTSLP 818 (946)
Q Consensus 741 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~--~~~l~ 818 (946)
+.+++|++..|... .-.....--.-.|++..+.+..|++......-+...++.+..|+|+.+++ +..+.
T Consensus 173 ~~v~tlh~~~c~~~---------~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD 243 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQ---------LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVD 243 (418)
T ss_pred hhhhhhhcCCcHHH---------HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHH
Confidence 12333333222110 00111111233577777777777666555444444567777777777665 23445
Q ss_pred CCCCCCCCceeeeccccCceee
Q 043855 819 SVGQLPSLKHLVVRRMSRVKRL 840 (946)
Q Consensus 819 ~l~~l~~L~~L~L~~~~~l~~~ 840 (946)
.+..+|.|..|.+.+++....+
T Consensus 244 ~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 244 ALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHcCCchhheeeccCCcccccc
Confidence 6777888888888877654433
No 157
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.60 E-value=1.6e-05 Score=70.45 Aligned_cols=96 Identities=21% Similarity=0.230 Sum_probs=80.0
Q ss_pred hhhhhcccCceeEEEecCCCCccCCccccC-CCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccC
Q 043855 585 VLHQLLRLQRLRVFSLCGYEIFELPDSIGE-LRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLI 663 (946)
Q Consensus 585 ~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~-l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 663 (946)
.+..+.+...|...+|++|.+..+|+.|.. .+.++.|+|++|.|..+|..+..++.|+.|+++.| .+...|..+..|.
T Consensus 45 avy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~ 123 (177)
T KOG4579|consen 45 AVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLI 123 (177)
T ss_pred HHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHH
Confidence 344556777888899999999999887744 45899999999999999999999999999999998 7778888888899
Q ss_pred ccCeeecCCCCCccccccc
Q 043855 664 NLHHLNNSNTDSLEEMPIG 682 (946)
Q Consensus 664 ~L~~L~l~~~~~~~~~p~~ 682 (946)
+|-.|+..+|. ...+|..
T Consensus 124 ~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 124 KLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred hHHHhcCCCCc-cccCcHH
Confidence 99999988887 5566654
No 158
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.00084 Score=75.64 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=85.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSG 290 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 290 (946)
...+.|+|+.|+|||+|++.+++.. ......+++++. ..+...+...+... .. ..++..++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~~------~~f~~~~~~~l~~~------~~----~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVRS------ELFTEHLVSAIRSG------EM----QRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEeeH------HHHHHHHHHHHhcc------hH----HHHHHHcc-
Confidence 4568899999999999999999843 222223444432 33444444444321 11 12333333
Q ss_pred ceEEEEEcCCCCCChhhH--hhhhccCCC-CCCCcEEEEEcCCh---------hHHHhhCCCCcEeCCCCChHHHHHHHH
Q 043855 291 KKFLFVLDDVWNESYNDW--VELSHPFEA-GAPGSKIIVTTRNQ---------GVAAIMGTVPAYQLKKLSDHDCLALFA 358 (946)
Q Consensus 291 kr~LlVlDdv~~~~~~~w--~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf~ 358 (946)
+.-+|++||+.......| +.+...+.. ...|..||+||... .+...+.....+++.+++.++...++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 344888999865322122 122222110 01345688887542 122223344678999999999999998
Q ss_pred HhhcCCCCCCCchhHHHHHHHHHHhcCCC
Q 043855 359 RHSLGTRDFSSHKSLEKIGREIVTKCDGL 387 (946)
Q Consensus 359 ~~a~~~~~~~~~~~l~~~~~~i~~~~~Gl 387 (946)
+++-...- ..+ +++..-|++.+.|.
T Consensus 282 ~k~~~~~~-~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALSI-RIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcCC-CCC---HHHHHHHHHhcCCC
Confidence 87643221 111 34555566666543
No 159
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=2.9e-05 Score=91.56 Aligned_cols=83 Identities=28% Similarity=0.335 Sum_probs=44.9
Q ss_pred cCCCCcEEecCCCCc-hhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccC
Q 043855 637 KLYKLQTLLLEDCDR-LKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLH 715 (946)
Q Consensus 637 ~L~~L~~L~L~~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~ 715 (946)
.||+|++|.+++-.. ..++-....++++|+.||+++++ +..+ .++++|++|++|...+........+.+|-+|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 356666666665211 12222334556677777777766 5555 56677777777755544444434444555555554
Q ss_pred CeeEEec
Q 043855 716 GTLNISK 722 (946)
Q Consensus 716 ~~L~i~~ 722 (946)
.|+|+.
T Consensus 224 -vLDIS~ 229 (699)
T KOG3665|consen 224 -VLDISR 229 (699)
T ss_pred -eeeccc
Confidence 454443
No 160
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0024 Score=68.24 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=66.0
Q ss_pred CceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh-hHH-HhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCC
Q 043855 290 GKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ-GVA-AIMGTVPAYQLKKLSDHDCLALFARHSLGTRDF 367 (946)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~ 367 (946)
+++-++|||++...+...-..+...+..-..++.+|++|.+. .+. ........+.+.+++.+++.+.+.+..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 566799999998777666666766666555677777666653 333 333456788999999999988886531
Q ss_pred CCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 368 SSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 368 ~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
.. +..+..++..++|.|+.+..+.
T Consensus 186 ~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1225678999999998776554
No 161
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0016 Score=70.87 Aligned_cols=164 Identities=11% Similarity=0.105 Sum_probs=90.3
Q ss_pred cccc-chhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 185 HVYG-REIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 185 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.++| -+..++.+.+.+... .-.+...++|+.|+||||+|+.+.+..--....... ..+.-..-+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHh
Confidence 3566 666677777777543 235677999999999999999887531100000000 000000000000
Q ss_pred HHhc-----CCCCCCcccHHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh-hH
Q 043855 264 RSFV-----ADPNVDNRDLILLQLQLKKQ----LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ-GV 333 (946)
Q Consensus 264 ~~l~-----~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~-~v 333 (946)
..-. ..........+++...+... ..+++=++|+|++...+......+...+.....++.+|++|.+. .+
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 0000 00000111122222222111 23556689999998777667777777777655677777777653 33
Q ss_pred HH-hhCCCCcEeCCCCChHHHHHHHHHh
Q 043855 334 AA-IMGTVPAYQLKKLSDHDCLALFARH 360 (946)
Q Consensus 334 ~~-~~~~~~~~~l~~L~~~e~~~Lf~~~ 360 (946)
.. .......+++.++++++..+.+.+.
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 32 2335678999999999998888653
No 162
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.53 E-value=0.0012 Score=74.54 Aligned_cols=157 Identities=18% Similarity=0.154 Sum_probs=90.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccC-C-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF-D-LKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQL 288 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~-~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 288 (946)
..-+.|+|.+|+|||+|++.+++. ..... . .++|++. .+++.++...+... .... +.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~~----f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLNE----FREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHHH----HHHHH
Confidence 445999999999999999999984 33222 2 3455543 34555565555321 1222 22233
Q ss_pred CCceEEEEEcCCCCCC-hhhH-hhhhccCCC-CCCCcEEEEEcC-ChhH--------HHhhCCCCcEeCCCCChHHHHHH
Q 043855 289 SGKKFLFVLDDVWNES-YNDW-VELSHPFEA-GAPGSKIIVTTR-NQGV--------AAIMGTVPAYQLKKLSDHDCLAL 356 (946)
Q Consensus 289 ~~kr~LlVlDdv~~~~-~~~w-~~~~~~l~~-~~~gs~iivTtR-~~~v--------~~~~~~~~~~~l~~L~~~e~~~L 356 (946)
+.+.-+|++||+.... ...+ ..+...+.. ...|..||+||. .+.- ...+.....+++++.+.++-..+
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 3345689999996421 1111 122222111 013446888875 3221 12223345789999999999999
Q ss_pred HHHhhcCCCCCCCchhHHHHHHHHHHhcCCChh
Q 043855 357 FARHSLGTRDFSSHKSLEKIGREIVTKCDGLPL 389 (946)
Q Consensus 357 f~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPL 389 (946)
+.+.+....- .. -+++...|++.+.|..-
T Consensus 272 L~~~~~~~~~-~l---~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 272 ARKMLEIEHG-EL---PEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHHHhcCC-CC---CHHHHHHHHhccccCHH
Confidence 9887653221 11 23567788888877543
No 163
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0041 Score=66.40 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc-----ccc--ccCCceEEEEeCCCCCHHHHHHHHHH
Q 043855 192 EKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDD-----RVR--DHFDLKAWTCVSDDFDVVRLIKVILR 264 (946)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-----~~~--~~F~~~~wv~~~~~~~~~~~~~~il~ 264 (946)
..+++.+.+... .-.+.+.+.|+.|+||+++|+.++.-- ... +.-...-++..+..+|+..+
T Consensus 11 ~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (319)
T PRK06090 11 VWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI------ 79 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 445566665433 245688999999999999999887521 000 00000000000111111000
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHh-----CCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh-hHH-Hhh
Q 043855 265 SFVADPNVDNRDLILLQLQLKKQL-----SGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ-GVA-AIM 337 (946)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~-~v~-~~~ 337 (946)
........-.++++.. +.+.+ .+++=++|+|++...+......+...+..-..++.+|++|.+. .+. ...
T Consensus 80 --~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 80 --KPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred --ecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0000001112233222 22222 3455689999998887778888887777656667766666554 333 334
Q ss_pred CCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 338 GTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 338 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
.....+.+.++++++..+.+..... . ....++..++|.|+.+..+.
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~~-----~-------~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 157 SRCQQWVVTPPSTAQAMQWLKGQGI-----T-------VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred hcceeEeCCCCCHHHHHHHHHHcCC-----c-------hHHHHHHHcCCCHHHHHHHh
Confidence 4567899999999999988865311 1 13467889999999776553
No 164
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.48 E-value=0.0014 Score=63.11 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=80.5
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc---cc---------------ccCCceEEEEe
Q 043855 188 GREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDR---VR---------------DHFDLKAWTCV 249 (946)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~---------------~~F~~~~wv~~ 249 (946)
|-++..+.|.+.+.... -...+.++|+.|+||+|+|..+++..- .. ....-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 45566677777775442 345789999999999999998886311 10 11223344433
Q ss_pred CCC---CCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEE
Q 043855 250 SDD---FDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIV 326 (946)
Q Consensus 250 ~~~---~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iiv 326 (946)
... ..++++ +++...+...+. .+++=++|+||+...+...+..++..+.....++++|+
T Consensus 76 ~~~~~~i~i~~i-r~i~~~~~~~~~-----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 76 DKKKKSIKIDQI-REIIEFLSLSPS-----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp TTSSSSBSHHHH-HHHHHHCTSS-T-----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred ccccchhhHHHH-HHHHHHHHHHHh-----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 332 233332 244443332221 24567899999998888888888888877667888888
Q ss_pred EcCChh-H-HHhhCCCCcEeCCCCC
Q 043855 327 TTRNQG-V-AAIMGTVPAYQLKKLS 349 (946)
Q Consensus 327 TtR~~~-v-~~~~~~~~~~~l~~L~ 349 (946)
+|++.+ + .........+.+.++|
T Consensus 138 ~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 138 ITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EES-GGGS-HHHHTTSEEEEE----
T ss_pred EECChHHChHHHHhhceEEecCCCC
Confidence 888754 2 2333445566666654
No 165
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.0016 Score=70.91 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=83.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhC
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLS 289 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 289 (946)
....+.|+|..|.|||.|++++.+ ....+......++++ .+....+++..+... -...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~~----------~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRDN----------EMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHhh----------hHHHHHHhh-
Confidence 467899999999999999999999 444444433333333 233444444443321 122344444
Q ss_pred CceEEEEEcCCCCCCh-hhHhh----hhccCCCCCCCcEEEEEcCCh---------hHHHhhCCCCcEeCCCCChHHHHH
Q 043855 290 GKKFLFVLDDVWNESY-NDWVE----LSHPFEAGAPGSKIIVTTRNQ---------GVAAIMGTVPAYQLKKLSDHDCLA 355 (946)
Q Consensus 290 ~kr~LlVlDdv~~~~~-~~w~~----~~~~l~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~ 355 (946)
.-=++++||++-... +.|.. +...+.. .|-.||+|++.. .+...+...-++++.+.+.+....
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 334888999965221 12322 2333333 334899998652 344555566789999999999999
Q ss_pred HHHHhhcCC
Q 043855 356 LFARHSLGT 364 (946)
Q Consensus 356 Lf~~~a~~~ 364 (946)
++.+++...
T Consensus 252 iL~kka~~~ 260 (408)
T COG0593 252 ILRKKAEDR 260 (408)
T ss_pred HHHHHHHhc
Confidence 998876543
No 166
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.48 E-value=0.002 Score=73.56 Aligned_cols=156 Identities=13% Similarity=0.136 Sum_probs=91.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF--DLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQL 288 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 288 (946)
...+.|+|++|+|||+|++.+++. +...+ ..+++++.. ++..++...+... ..+. +.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~------~~~~----~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN------TMEE----FKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC------cHHH----HHHHH
Confidence 456899999999999999999984 33332 224455432 3334444444221 1122 22333
Q ss_pred CCceEEEEEcCCCCCChhh-H-hhhhc---cCCCCCCCcEEEEEcCChh---------HHHhhCCCCcEeCCCCChHHHH
Q 043855 289 SGKKFLFVLDDVWNESYND-W-VELSH---PFEAGAPGSKIIVTTRNQG---------VAAIMGTVPAYQLKKLSDHDCL 354 (946)
Q Consensus 289 ~~kr~LlVlDdv~~~~~~~-w-~~~~~---~l~~~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~ 354 (946)
+ +.-+|||||+....... + +.+.. .+.. .|..||+|+.... +...+.....+++++.+.++-.
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~--~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHE--AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH--CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 3 34489999996432111 1 22222 2222 3445788776531 2223334457999999999999
Q ss_pred HHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHH
Q 043855 355 ALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAA 391 (946)
Q Consensus 355 ~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 391 (946)
.++.+.+-.... . --+++...|++.+.|..-.+
T Consensus 287 ~il~~~~~~~~~-~---l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 287 AILKKKAEEEGI-D---LPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHHcCC-C---CCHHHHHHHHcCcCCCHHHH
Confidence 999988753211 1 12366788888888876543
No 167
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.48 E-value=3.8e-05 Score=76.09 Aligned_cols=92 Identities=26% Similarity=0.284 Sum_probs=65.9
Q ss_pred hhhhcccCceeEEEecCCCCc-----cCCccccCCCCCcEEeccCCCcc----ccc-------cchhcCCCCcEEecCCC
Q 043855 586 LHQLLRLQRLRVFSLCGYEIF-----ELPDSIGELRHLRYLNLSRTLIE----VLP-------ESVNKLYKLQTLLLEDC 649 (946)
Q Consensus 586 ~~~l~~~~~Lr~L~L~~~~~~-----~lp~~i~~l~~Lr~L~Ls~~~i~----~lp-------~~i~~L~~L~~L~L~~~ 649 (946)
...+..+..+..++||||.|. .+...|.+-.+|+..+++.-... ++| +.+-+|++|++.+||.|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 444446788999999999775 35567788889999999863211 334 34568899999999998
Q ss_pred Cchhhchh----hhcccCccCeeecCCCCCccc
Q 043855 650 DRLKKLCA----SLGNLINLHHLNNSNTDSLEE 678 (946)
Q Consensus 650 ~~l~~lp~----~i~~L~~L~~L~l~~~~~~~~ 678 (946)
-.-...|+ .|++-+.|.||.+++|. ++.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp 134 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNG-LGP 134 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCC-CCc
Confidence 54444443 46777889999998886 443
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.46 E-value=0.0014 Score=80.76 Aligned_cols=155 Identities=14% Similarity=0.151 Sum_probs=84.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc------CCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDH------FDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------F~~~~wv~~~~~~~~~~ 257 (946)
..++||+.++++++..|.... ..-+.++|++|+|||++|+.++.. +... ....+|.. ++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEEe-----eHHH
Confidence 359999999999999996542 244558999999999999999874 2111 12233321 1111
Q ss_pred HHHHHHHHhcCCCCCCcccHH-HHHHHHHHHhC-CceEEEEEcCCCCCC-------hhhHhhhhccCCCCCCCcEEEEEc
Q 043855 258 LIKVILRSFVADPNVDNRDLI-LLQLQLKKQLS-GKKFLFVLDDVWNES-------YNDWVELSHPFEAGAPGSKIIVTT 328 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~-~~~~~l~~~l~-~kr~LlVlDdv~~~~-------~~~w~~~~~~l~~~~~gs~iivTt 328 (946)
+ +. +.. ...+.+ .+...+.+.-+ +++.+|++|++.... ..+-..+..+.... ..-++|-+|
T Consensus 240 l----~a---~~~--~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaT 309 (852)
T TIGR03346 240 L----IA---GAK--YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGAT 309 (852)
T ss_pred H----hh---cch--hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeC
Confidence 1 10 000 011122 22222332222 468999999996321 00111222222221 123555555
Q ss_pred CChhHHHh-------hCCCCcEeCCCCChHHHHHHHHHhh
Q 043855 329 RNQGVAAI-------MGTVPAYQLKKLSDHDCLALFARHS 361 (946)
Q Consensus 329 R~~~v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~a 361 (946)
...+.-.. ......+.+...+.++...++....
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 55443221 1234568899999999999887653
No 169
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.46 E-value=0.00023 Score=66.32 Aligned_cols=69 Identities=19% Similarity=0.068 Sum_probs=40.6
Q ss_pred EEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCC-ce
Q 043855 214 LPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSG-KK 292 (946)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~-kr 292 (946)
|.|+|++|+||||+|+.+++.. ..+ .+.++.+.-.+ . ........+...+.+.-+. ++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~~---~~~i~~~~~~~--------------~--~~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GFP---FIEIDGSELIS--------------S--YAGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TSE---EEEEETTHHHT--------------S--STTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc--ccc---ccccccccccc--------------c--cccccccccccccccccccccc
Confidence 5789999999999999999853 221 34444433110 0 0222233333334433233 48
Q ss_pred EEEEEcCCCCC
Q 043855 293 FLFVLDDVWNE 303 (946)
Q Consensus 293 ~LlVlDdv~~~ 303 (946)
.+|+|||++..
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999653
No 170
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.45 E-value=9.2e-06 Score=80.28 Aligned_cols=256 Identities=19% Similarity=0.135 Sum_probs=146.8
Q ss_pred cccCCCCCcEEeccCCCcc-----ccccchhcCCCCcEEecCCCC----------chhhchhhhcccCccCeeecCCCCC
Q 043855 611 SIGELRHLRYLNLSRTLIE-----VLPESVNKLYKLQTLLLEDCD----------RLKKLCASLGNLINLHHLNNSNTDS 675 (946)
Q Consensus 611 ~i~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~----------~l~~lp~~i~~L~~L~~L~l~~~~~ 675 (946)
.+..+..+..++||+|.|. .+...|.+-.+|+..+++.-. .+.-+-+.+-+|++|+..++|.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3455888999999999987 455567777899999987531 1222334467899999999999986
Q ss_pred ccccccc----cCCCCCCcccCceecCCCC--CCChh-ccccccccCCeeEEecCCCCCCccccccccCCcccccCceEE
Q 043855 676 LEEMPIG----IGKLTSLQTLCSFVVGKDS--GSGLR-ELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLL 748 (946)
Q Consensus 676 ~~~~p~~----i~~l~~L~~L~~~~~~~~~--~~~~~-~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L 748 (946)
....|+. |.+-+.|.+|.+.+++... +..+. .|..|... ....+++.|+....
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n--------------------KKaa~kp~Le~vic 164 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN--------------------KKAADKPKLEVVIC 164 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH--------------------hhhccCCCceEEEe
Confidence 6566654 6677888888776654322 11111 11111111 12344566777766
Q ss_pred EecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcC------cCCCCCCCccEEEEecCCCCCC----CC
Q 043855 749 RWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTW------LGDFSFSNLVTLKFEDCGMCTS----LP 818 (946)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~------~~~~~l~~L~~L~L~~~~~~~~----l~ 818 (946)
..|+.-..+ .......+..+.+|+.+.+..|.+. |.. .+...+.+|+.|+|.+|.+... +.
T Consensus 165 grNRlengs-------~~~~a~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 165 GRNRLENGS-------KELSAALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred ccchhccCc-------HHHHHHHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 665443210 1122234455677888888777643 221 1112467888888888876421 11
Q ss_pred -CCCCCCCCceeeeccccCceeeCc-cccCCCCCCcCCCcceeeccCCccccccccc--CCCCCCCCCCcccEeeecCCc
Q 043855 819 -SVGQLPSLKHLVVRRMSRVKRLGS-EFYGNDCPIPFLCLETLCFEDMREWEDWIPC--GSSQGIELFPNLREFRILRCP 894 (946)
Q Consensus 819 -~l~~l~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~~~~p~L~~L~l~~c~ 894 (946)
.+...+.|+.|.+.+|-. ..-+. .++..-....+|+|..|.+.+...-.++... ......+.+|-|..|.+.+|
T Consensus 236 ~al~~W~~lrEL~lnDCll-s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN- 313 (388)
T COG5238 236 DALCEWNLLRELRLNDCLL-SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN- 313 (388)
T ss_pred HHhcccchhhhccccchhh-ccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC-
Confidence 244556788888887732 22211 1111111234778888877654322211100 01112467888888888887
Q ss_pred Ccc
Q 043855 895 KLQ 897 (946)
Q Consensus 895 ~L~ 897 (946)
.+.
T Consensus 314 r~~ 316 (388)
T COG5238 314 RIK 316 (388)
T ss_pred cch
Confidence 444
No 171
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00077 Score=80.51 Aligned_cols=157 Identities=20% Similarity=0.223 Sum_probs=86.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc---cccc-CCceEEEEeCCCCCHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDR---VRDH-FDLKAWTCVSDDFDVVRLI 259 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~-F~~~~wv~~~~~~~~~~~~ 259 (946)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.++.... +... .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-
Confidence 359999999999999987642 23346899999999999999987321 1111 13444421 11111
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHh-CCceEEEEEcCCCCC--------ChhhHhhhhccCCCCCCCcEEEEEcCC
Q 043855 260 KVILRSFVADPNVDNRDLILLQLQLKKQL-SGKKFLFVLDDVWNE--------SYNDWVELSHPFEAGAPGSKIIVTTRN 330 (946)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~w~~~~~~l~~~~~gs~iivTtR~ 330 (946)
+ .+.. ...+.+.....+.+.+ +.++.+|+||++... ...+...+..++... ..-+||-+|..
T Consensus 254 ---l---aG~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~ 324 (758)
T PRK11034 254 ---L---AGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_pred ---h---cccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCCh
Confidence 1 1111 1112222222222222 346789999999531 111222223333222 23355555555
Q ss_pred hhHHHh-------hCCCCcEeCCCCChHHHHHHHHHhh
Q 043855 331 QGVAAI-------MGTVPAYQLKKLSDHDCLALFARHS 361 (946)
Q Consensus 331 ~~v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~a 361 (946)
.+.... ......+.+++.+.++..+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 443221 1234579999999999999988643
No 172
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.43 E-value=0.0057 Score=74.64 Aligned_cols=163 Identities=19% Similarity=0.227 Sum_probs=84.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|.+..+++|.+++............++.++|++|+|||++|+.+++. ....|- -+.++...+..++.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~---- 390 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIR---- 390 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHc----
Confidence 458999999999998775321101123458999999999999999999983 333331 22233322322221
Q ss_pred HHhcCCCCC-CcccHHHHHHHHHHHhCCceEEEEEcCCCCCChh-------hHhhhhc-----cCCCC-------CCCcE
Q 043855 264 RSFVADPNV-DNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYN-------DWVELSH-----PFEAG-------APGSK 323 (946)
Q Consensus 264 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-------~w~~~~~-----~l~~~-------~~gs~ 323 (946)
+.... .......+...+...-. ++-+|+||+++..... ..-.+.. .|.+. .....
T Consensus 391 ----g~~~~~~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 391 ----GHRRTYVGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred ----CCCCceeCCCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 11100 11111223333433322 3347899998654211 1111111 11111 02233
Q ss_pred EEEEcCChh-HH-HhhCCCCcEeCCCCChHHHHHHHHHh
Q 043855 324 IIVTTRNQG-VA-AIMGTVPAYQLKKLSDHDCLALFARH 360 (946)
Q Consensus 324 iivTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~ 360 (946)
+|.||.... +. ........+++.+++.++-.+++.++
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~ 504 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKY 504 (775)
T ss_pred EEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHH
Confidence 445554432 11 12234457889999988888887654
No 173
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.42 E-value=9.6e-05 Score=87.26 Aligned_cols=108 Identities=22% Similarity=0.235 Sum_probs=80.2
Q ss_pred cccccceeeccCCCCCCCccchhHHhhhhhc-ccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCcccc--ccchh
Q 043855 560 YDIVCLRTFLPVNLPNSSRGLLAFRVLHQLL-RLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVL--PESVN 636 (946)
Q Consensus 560 ~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~-~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~l--p~~i~ 636 (946)
..+|.||+|.+.+.. +...-...++ ++++|+.||+|+++++.+ ..+++|++|+.|.+.+-.+..- -..+.
T Consensus 145 ~~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred hhCcccceEEecCce------ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 368899999887753 2222234455 999999999999999988 7899999999999998766642 24577
Q ss_pred cCCCCcEEecCCCCchhh--ch----hhhcccCccCeeecCCCC
Q 043855 637 KLYKLQTLLLEDCDRLKK--LC----ASLGNLINLHHLNNSNTD 674 (946)
Q Consensus 637 ~L~~L~~L~L~~~~~l~~--lp----~~i~~L~~L~~L~l~~~~ 674 (946)
+|++|++||+|....... +. +.-..|++||.||.+++.
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 899999999997633211 11 122358999999999876
No 174
>PRK08116 hypothetical protein; Validated
Probab=97.42 E-value=0.0005 Score=72.10 Aligned_cols=104 Identities=23% Similarity=0.256 Sum_probs=58.4
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGK 291 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 291 (946)
..+.++|.+|+|||.||.++++.. ...-..+++++ ..+++..+........ ..+... +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~~---~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSSG---KEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhccc---cccHHH----HHHHhcCC
Confidence 458899999999999999999953 22233455554 3345555544443221 111222 22334433
Q ss_pred eEEEEEcCCCCCChhhHhh--hhccCCC-CCCCcEEEEEcCCh
Q 043855 292 KFLFVLDDVWNESYNDWVE--LSHPFEA-GAPGSKIIVTTRNQ 331 (946)
Q Consensus 292 r~LlVlDdv~~~~~~~w~~--~~~~l~~-~~~gs~iivTtR~~ 331 (946)
. ||||||+......+|.. +...+.. -..|..+|+||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3 89999996544445543 2221111 12455689998753
No 175
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.41 E-value=0.0017 Score=78.28 Aligned_cols=166 Identities=20% Similarity=0.260 Sum_probs=88.7
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHH
Q 043855 183 EAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVI 262 (946)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 262 (946)
+.+.+|.++.+++|+++|............++.++|++|+||||+|+.++.. ....| .-+..+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 4568999999999999887422111224468999999999999999999973 33333 223333333332221110
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhh----HhhhhccCCC---------------CCCCcE
Q 043855 263 LRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYND----WVELSHPFEA---------------GAPGSK 323 (946)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----w~~~~~~l~~---------------~~~gs~ 323 (946)
....+ . ....+...+... ....-+++||.++...... -..+...+.. .-...-
T Consensus 396 -~~~~g-----~-~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 -RTYIG-----S-MPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred -hccCC-----C-CCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 00000 0 111222233322 1234478899996543211 1222222211 112334
Q ss_pred EEEEcCChhHHH-hhCCCCcEeCCCCChHHHHHHHHHhh
Q 043855 324 IIVTTRNQGVAA-IMGTVPAYQLKKLSDHDCLALFARHS 361 (946)
Q Consensus 324 iivTtR~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~a 361 (946)
+|.|+....+.. ..+...++++.+++++|-.++..++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 455555443322 22344678999999999888887754
No 176
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.0047 Score=61.71 Aligned_cols=182 Identities=16% Similarity=0.206 Sum_probs=108.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeC-CCCCHHHHHHHHHHHhcCCCCCC-cccHHHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVS-DDFDVVRLIKVILRSFVADPNVD-NRDLILLQLQLKKQ 287 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~~l~~~ 287 (946)
+.+++.++|.-|.|||.+.+.+..... + +.++-|.++ .......+...|...+..++... .....++...+...
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~-~---d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN-E---DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-C---CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 457999999999999999995443211 1 112223333 44677788888888887743311 12334444445544
Q ss_pred h-CCce-EEEEEcCCCCCChhhHhhhhccCCCCCCCc---EEEEEcC--------ChhHHHhhCCCCc-EeCCCCChHHH
Q 043855 288 L-SGKK-FLFVLDDVWNESYNDWVELSHPFEAGAPGS---KIIVTTR--------NQGVAAIMGTVPA-YQLKKLSDHDC 353 (946)
Q Consensus 288 l-~~kr-~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs---~iivTtR--------~~~v~~~~~~~~~-~~l~~L~~~e~ 353 (946)
. +++| ..+++||..+...+..+.++........++ +|+..-. -......-..... |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 4 4566 899999997766555555433222111111 2333221 1111222122334 99999999999
Q ss_pred HHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhh
Q 043855 354 LALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGG 396 (946)
Q Consensus 354 ~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 396 (946)
..++..+.-+...+.+- --.+....|..+..|.|.+|..++.
T Consensus 206 ~~yl~~~Le~a~~~~~l-~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 206 GLYLRHRLEGAGLPEPL-FSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHhccCCCccc-CChhHHHHHHHHhccchHHHHHHHH
Confidence 98888776544322111 1235667899999999999988765
No 177
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.37 E-value=0.0018 Score=79.40 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=83.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc---cc-CCceEE-EEeCCCCCHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVR---DH-FDLKAW-TCVSDDFDVVRL 258 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~-F~~~~w-v~~~~~~~~~~~ 258 (946)
..++||+.+++++++.|.... ..-+.++|++|+||||+|+.+.....-. .. ....+| +..+. +
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------h
Confidence 359999999999999996542 2455689999999999999999742100 00 012222 22221 1
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHh-CCceEEEEEcCCCCCCh-------hhHhhhhccCCCCCCCcEEEEEcCC
Q 043855 259 IKVILRSFVADPNVDNRDLILLQLQLKKQL-SGKKFLFVLDDVWNESY-------NDWVELSHPFEAGAPGSKIIVTTRN 330 (946)
Q Consensus 259 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~-------~~w~~~~~~l~~~~~gs~iivTtR~ 330 (946)
+ . +... ...-...+...+.+.. .+++.+|++|++..... .+-..+..+.... ..-++|-+|..
T Consensus 246 ~----a---g~~~-~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt~ 316 (857)
T PRK10865 246 V----A---GAKY-RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTL 316 (857)
T ss_pred h----h---ccch-hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCCC
Confidence 0 0 0000 0111112222232222 25689999999854210 0112222222221 23456666655
Q ss_pred hhHHHhh-------CCCCcEeCCCCChHHHHHHHHHhh
Q 043855 331 QGVAAIM-------GTVPAYQLKKLSDHDCLALFARHS 361 (946)
Q Consensus 331 ~~v~~~~-------~~~~~~~l~~L~~~e~~~Lf~~~a 361 (946)
.+....+ ...+.+.+..-+.++...+++...
T Consensus 317 ~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 317 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 5432111 123456677778888888886543
No 178
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.37 E-value=5.8e-06 Score=92.28 Aligned_cols=101 Identities=26% Similarity=0.232 Sum_probs=71.8
Q ss_pred ccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccc-hhcCCCCcEEecCCCCchhhchhhhcccCccCeee
Q 043855 591 RLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPES-VNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLN 669 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 669 (946)
-++.|+.|+|+.|.+.... .+..|.+|++|||++|.+..+|.- ...+. |+.|++++| .++++ .++.+|.+|++||
T Consensus 185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhh-hhHHhhhhhhccc
Confidence 5677888888888887764 677888888888888888877763 33344 888888887 67776 5688888888888
Q ss_pred cCCCCCcccccc--ccCCCCCCcccCcee
Q 043855 670 NSNTDSLEEMPI--GIGKLTSLQTLCSFV 696 (946)
Q Consensus 670 l~~~~~~~~~p~--~i~~l~~L~~L~~~~ 696 (946)
+++|- +..... -++.|..|..|.+-.
T Consensus 261 lsyNl-l~~hseL~pLwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 261 LSYNL-LSEHSELEPLWSLSSLIVLWLEG 288 (1096)
T ss_pred hhHhh-hhcchhhhHHHHHHHHHHHhhcC
Confidence 88875 333221 145566666665543
No 179
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.36 E-value=0.00088 Score=63.08 Aligned_cols=88 Identities=19% Similarity=0.074 Sum_probs=46.7
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGK 291 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 291 (946)
..+.|+|++|+||||+|+.++... ......++.+..+........... ................. ..+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL--GPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRL-RLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc--CCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHH-HHHHHHHHhc
Confidence 578999999999999999999843 222223555555443322221111 11111111011222222 2333333333
Q ss_pred -eEEEEEcCCCCCC
Q 043855 292 -KFLFVLDDVWNES 304 (946)
Q Consensus 292 -r~LlVlDdv~~~~ 304 (946)
..++++|+++...
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 4999999997654
No 180
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.35 E-value=0.00064 Score=75.77 Aligned_cols=158 Identities=17% Similarity=0.166 Sum_probs=87.5
Q ss_pred cccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDL-------MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
.++.|.+..+++|.+.+.-.-. .+-...+-+.++|++|.|||++|+.+++. ....| +.|..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 4578999999888887642100 01123456789999999999999999983 33333 2222111
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCC--------h--hh----HhhhhccCC--CCCC
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNES--------Y--ND----WVELSHPFE--AGAP 320 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~--~~----w~~~~~~l~--~~~~ 320 (946)
+ .....+ .....+...+.....+.+.+|+||+++... . .. ...+...+. ....
T Consensus 253 -L----~~k~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 253 -L----IQKYLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred -h----hhhhcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 1 111111 111122223333334678899999974210 0 00 111111111 1123
Q ss_pred CcEEEEEcCChhHHHh-hC----CCCcEeCCCCChHHHHHHHHHhhc
Q 043855 321 GSKIIVTTRNQGVAAI-MG----TVPAYQLKKLSDHDCLALFARHSL 362 (946)
Q Consensus 321 gs~iivTtR~~~v~~~-~~----~~~~~~l~~L~~~e~~~Lf~~~a~ 362 (946)
+.+||+||...+.... +- -...+.+...+.++..++|..+..
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 5678888876544332 11 234688999999999999987653
No 181
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.33 E-value=0.0026 Score=73.07 Aligned_cols=154 Identities=12% Similarity=0.135 Sum_probs=88.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhC
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHF--DLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLS 289 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 289 (946)
..+.|+|..|+|||.|++.+++. ....+ ..+++++. .++..++...+... ..+ .+++.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~------~~~----~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDG------KGD----SFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhc------cHH----HHHHHhh
Confidence 45899999999999999999984 32221 12344433 33444444443211 111 1222332
Q ss_pred CceEEEEEcCCCCCCh-hhHhh-hhccCCC-CCCCcEEEEEcCCh---------hHHHhhCCCCcEeCCCCChHHHHHHH
Q 043855 290 GKKFLFVLDDVWNESY-NDWVE-LSHPFEA-GAPGSKIIVTTRNQ---------GVAAIMGTVPAYQLKKLSDHDCLALF 357 (946)
Q Consensus 290 ~kr~LlVlDdv~~~~~-~~w~~-~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf 357 (946)
. -=+|||||+..... ..|.. +...+.. ...|..|||||+.. .+...+....++.+.+.+.+.-..++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 34788999965422 22322 2222211 12355688888752 23334445668999999999999999
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 043855 358 ARHSLGTRDFSSHKSLEKIGREIVTKCDGLP 388 (946)
Q Consensus 358 ~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlP 388 (946)
.+++....- .. -+++.+-|++.+.+..
T Consensus 456 ~kka~~r~l-~l---~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 456 RKKAVQEQL-NA---PPEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHhcCC-CC---CHHHHHHHHHhccCCH
Confidence 988754321 12 2356667777766653
No 182
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.32 E-value=0.0014 Score=76.27 Aligned_cols=50 Identities=20% Similarity=0.266 Sum_probs=40.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+++|.++.++++..|+..... .....+++.|+|++|.||||+++.++..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5699999999999999865432 1223468999999999999999999974
No 183
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.011 Score=63.31 Aligned_cols=179 Identities=12% Similarity=0.072 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccC------Cc--eEEEEeCCCCCHHHHHHHHH
Q 043855 192 EKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF------DL--KAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F------~~--~~wv~~~~~~~~~~~~~~il 263 (946)
..+.+...+... .-.+.+.+.|+.|+||+++|+.++.----.... .| .-++..+..+|+..+
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (325)
T PRK06871 10 TYQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL----- 79 (325)
T ss_pred HHHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-----
Confidence 345566666433 234677899999999999999988621000000 00 000111111111100
Q ss_pred HHhcCCCCCCcccHHHHH---HHHHHH-hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh-hHH-Hhh
Q 043855 264 RSFVADPNVDNRDLILLQ---LQLKKQ-LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ-GVA-AIM 337 (946)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~---~~l~~~-l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~-~v~-~~~ 337 (946)
... ......++++. ..+... ..+++=++|+|++...+......+...+.....++.+|++|.+. .+. ...
T Consensus 80 ---~p~-~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 80 ---EPI-DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ---ccc-cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 000 00111222222 222211 23566788899998888778888887777666677777776654 443 223
Q ss_pred CCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHH
Q 043855 338 GTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKT 393 (946)
Q Consensus 338 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 393 (946)
.....+.+.++++++..+.+...... . ...+...+..++|.|+.+..
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~-----~----~~~~~~~~~l~~g~p~~A~~ 202 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSA-----E----ISEILTALRINYGRPLLALT 202 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhcc-----C----hHHHHHHHHHcCCCHHHHHH
Confidence 45678999999999999888765311 1 11245667889999974433
No 184
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.27 E-value=0.0035 Score=71.07 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=88.4
Q ss_pred cccccchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc-----CCceEEEEeCC
Q 043855 184 AHVYGREIEKKEIVELLLRDD-------LMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDH-----FDLKAWTCVSD 251 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----F~~~~wv~~~~ 251 (946)
.++.|.+..+++|.+.+..+- ..+-...+-+.++|++|.|||++|+.+++.. ... +....++.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL--~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL--AQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh--ccccccccCCceeEEeccc
Confidence 458889999999888764210 0011234568899999999999999999842 222 12233444432
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH-hCCceEEEEEcCCCCCC-------hhhH-----hhhhccCCCC
Q 043855 252 DFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQ-LSGKKFLFVLDDVWNES-------YNDW-----VELSHPFEAG 318 (946)
Q Consensus 252 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~-------~~~w-----~~~~~~l~~~ 318 (946)
. +++....++ .......+....++. -.+++.+|+||+++... ..+. ..+...+...
T Consensus 260 ~--------eLl~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 260 P--------ELLNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred h--------hhcccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 1 111111100 011112222222222 23578999999996421 0111 1222222211
Q ss_pred --CCCcEEEEEcCChhHHH-hh-C---CCCcEeCCCCChHHHHHHHHHhh
Q 043855 319 --APGSKIIVTTRNQGVAA-IM-G---TVPAYQLKKLSDHDCLALFARHS 361 (946)
Q Consensus 319 --~~gs~iivTtR~~~v~~-~~-~---~~~~~~l~~L~~~e~~~Lf~~~a 361 (946)
..+..||.||...+... .+ . -...+.+...+.++..++|..+.
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13445566665543321 11 1 13458999999999999998875
No 185
>PRK08118 topology modulation protein; Reviewed
Probab=97.27 E-value=0.00013 Score=70.79 Aligned_cols=34 Identities=32% Similarity=0.591 Sum_probs=27.7
Q ss_pred EEEEEecCCChHHHHHHHHhcccccc-ccCCceEE
Q 043855 213 VLPIVGMGGLGKTTLAQLVYNDDRVR-DHFDLKAW 246 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~w 246 (946)
.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999865443 45777776
No 186
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.23 E-value=0.0054 Score=69.59 Aligned_cols=210 Identities=16% Similarity=0.095 Sum_probs=124.0
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc------ccccCCceEEEEeCCCCCHHHH
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDR------VRDHFDLKAWTCVSDDFDVVRL 258 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------~~~~F~~~~wv~~~~~~~~~~~ 258 (946)
.+-+|+.|..+|..++...-.. ++..+.+.|.|.+|.|||..+..|.+..+ --..|+ .+.|+...-..+.++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 4669999999999888654321 24456999999999999999999998422 123353 345666666779999
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHH-hCCceEEEEEcCCCCCChhhHhhhhccCC-CCCCCcEEEEEcC-C-hh--
Q 043855 259 IKVILRSFVADPNVDNRDLILLQLQLKKQ-LSGKKFLFVLDDVWNESYNDWVELSHPFE-AGAPGSKIIVTTR-N-QG-- 332 (946)
Q Consensus 259 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~w~~~~~~l~-~~~~gs~iivTtR-~-~~-- 332 (946)
+..|..++.++........+.+..++..- -..+..+|++|+++..-...-+-+...|. ...++||++|-+= + .+
T Consensus 475 Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlP 554 (767)
T KOG1514|consen 475 YEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLP 554 (767)
T ss_pred HHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCH
Confidence 99999999876643333333333333200 12356889999873310000111222222 2346787655431 1 11
Q ss_pred -------HHHhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhh
Q 043855 333 -------VAAIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLL 398 (946)
Q Consensus 333 -------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 398 (946)
|+..+ ....+...|.+..+-.++...+.-+... -.....+-++++|+.-.|-.-.|+.+.-++.
T Consensus 555 Er~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 555 ERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred HHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 11111 2245777888888888887766544322 2233455566677766666666666554443
No 187
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0037 Score=70.75 Aligned_cols=106 Identities=24% Similarity=0.246 Sum_probs=67.5
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHH
Q 043855 182 NEAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKV 261 (946)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 261 (946)
-+.+.+|.++-+++|.+++.-..-.++-+.+++..+|++|+|||++|+.|+. .....| +-++++.-.|+.+|
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeI--- 480 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEI--- 480 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhh---
Confidence 3567899999999999998654332445679999999999999999999998 344444 23455655555443
Q ss_pred HHHHhcCCCCC--CcccHHHHHHHHHHHhCCceEEEEEcCCCC
Q 043855 262 ILRSFVADPNV--DNRDLILLQLQLKKQLSGKKFLFVLDDVWN 302 (946)
Q Consensus 262 il~~l~~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 302 (946)
.+.... .++ ...+.+.+++. +-..=|+.||.|+.
T Consensus 481 -----kGHRRTYVGAM-PGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 481 -----KGHRRTYVGAM-PGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred -----cccceeeeccC-ChHHHHHHHhh-CCCCceEEeehhhh
Confidence 222110 111 12233333322 33466888898854
No 188
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00099 Score=75.62 Aligned_cols=167 Identities=22% Similarity=0.291 Sum_probs=94.7
Q ss_pred ccccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 181 VNEAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 181 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
+-+.+.+|-++-+++|++.|.-......-+.+++++||++|+|||+|++.++. ...+.|- -++++.--|..++
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEI-- 392 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEI-- 392 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHh--
Confidence 34567899999999999998643221223458999999999999999999998 4555552 2334433333222
Q ss_pred HHHHHhcCCCCC--CcccHHHHHHHHHHHhCCceEEEEEcCCCCCChh-------hHhhhhcc-----CCCC-----CCC
Q 043855 261 VILRSFVADPNV--DNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYN-------DWVELSHP-----FEAG-----APG 321 (946)
Q Consensus 261 ~il~~l~~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-------~w~~~~~~-----l~~~-----~~g 321 (946)
.+.... .+..-. +.+.+++ .+.+.=|++||.++..+.+ ..-++..+ |.+. --=
T Consensus 393 ------RGHRRTYIGamPGr-IiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 393 ------RGHRRTYIGAMPGK-IIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ------ccccccccccCChH-HHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 121111 112211 2222222 2456778999998653211 11111111 1110 011
Q ss_pred cEEE-EEcCC-hh-H-HHhhCCCCcEeCCCCChHHHHHHHHHhhc
Q 043855 322 SKII-VTTRN-QG-V-AAIMGTVPAYQLKKLSDHDCLALFARHSL 362 (946)
Q Consensus 322 s~ii-vTtR~-~~-v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~ 362 (946)
|.|+ |||-+ -+ + +..++...++++.+.+++|-.++-+++..
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 4443 34433 22 2 23445667899999999999988877653
No 189
>CHL00176 ftsH cell division protein; Validated
Probab=97.20 E-value=0.0029 Score=74.35 Aligned_cols=177 Identities=16% Similarity=0.200 Sum_probs=95.5
Q ss_pred cccccchhHHHHHHHH---HhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVEL---LLRDDL---MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.++.|.++.++++.+. +..... .+....+-+.++|++|.|||+||+.++... ... ++.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----eeeccHH----H
Confidence 4588887766665544 332211 011234568999999999999999999742 212 2333211 1
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCC----------hhhHhh----hhccCC--CCCCC
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNES----------YNDWVE----LSHPFE--AGAPG 321 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~w~~----~~~~l~--~~~~g 321 (946)
+. ....+ .....+...+.......+++|+|||++... ...+.. +...+. ....+
T Consensus 252 f~----~~~~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 252 FV----EMFVG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HH----HHhhh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 11 11100 011223334455556788999999995321 112222 222221 12345
Q ss_pred cEEEEEcCChhHHHh-h-C---CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCC
Q 043855 322 SKIIVTTRNQGVAAI-M-G---TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDG 386 (946)
Q Consensus 322 s~iivTtR~~~v~~~-~-~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~G 386 (946)
..||.||...+.... + . -...+.+...+.++-.++++.++-... ..+ ......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LSP--DVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cch--hHHHHHHHhcCCC
Confidence 567777766543221 1 1 234678888888888888887764311 111 2234667777777
No 190
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.011 Score=63.93 Aligned_cols=94 Identities=17% Similarity=0.266 Sum_probs=66.0
Q ss_pred CceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCC-hhHH-HhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCC
Q 043855 290 GKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRN-QGVA-AIMGTVPAYQLKKLSDHDCLALFARHSLGTRDF 367 (946)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~-~~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~ 367 (946)
+++-++|+|++...+...+..+...+..-.+++.+|++|.+ ..+. ........+.+.+++.++..+.+.....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~----- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV----- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC-----
Confidence 45668899999988888888888887766667766665555 4443 3334567899999999999998876411
Q ss_pred CCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 368 SSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 368 ~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
. . ...++..++|.|+.+..+.
T Consensus 206 ~---~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 A---D----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred C---h----HHHHHHHcCCCHHHHHHHH
Confidence 1 1 1235777899998665544
No 191
>PRK10536 hypothetical protein; Provisional
Probab=97.18 E-value=0.0027 Score=64.58 Aligned_cols=135 Identities=13% Similarity=0.149 Sum_probs=75.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEE----eCCC-----CC
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTC----VSDD-----FD 254 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~----~~~~-----~~ 254 (946)
..+.++......+..++.+. .++.+.|++|.|||+||.++..+.-..+.|+.++-+. +++. -+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 34678888889999988532 4899999999999999999887422234444333211 1111 01
Q ss_pred HHH----HHHHHHHHhcCCCCCCcccHHHHHH--------HHHHHhCCceE---EEEEcCCCCCChhhHhhhhccCCCCC
Q 043855 255 VVR----LIKVILRSFVADPNVDNRDLILLQL--------QLKKQLSGKKF---LFVLDDVWNESYNDWVELSHPFEAGA 319 (946)
Q Consensus 255 ~~~----~~~~il~~l~~~~~~~~~~~~~~~~--------~l~~~l~~kr~---LlVlDdv~~~~~~~w~~~~~~l~~~~ 319 (946)
..+ .++-+...+..-. .....+.+.. .=-.+++|+.+ +||+|++.+.+..+...+... .+
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~--~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g 201 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL--GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LG 201 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cC
Confidence 111 1111211111100 0001111100 01135677654 999999988776555555443 35
Q ss_pred CCcEEEEEcCCh
Q 043855 320 PGSKIIVTTRNQ 331 (946)
Q Consensus 320 ~gs~iivTtR~~ 331 (946)
.+|++|+|--..
T Consensus 202 ~~sk~v~~GD~~ 213 (262)
T PRK10536 202 ENVTVIVNGDIT 213 (262)
T ss_pred CCCEEEEeCChh
Confidence 789999987544
No 192
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.18 E-value=0.00075 Score=68.26 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=30.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeC
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVS 250 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 250 (946)
-.++|+|..|+|||||+..+.. .....|+.+.+++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEecC
Confidence 4678999999999999999997 466788877777553
No 193
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.15 E-value=0.0047 Score=68.47 Aligned_cols=179 Identities=15% Similarity=0.200 Sum_probs=95.0
Q ss_pred cccccchhHHHHHHHHHhcC----C---CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLRD----D---LMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
.++.|.+..+++|.+.+..+ + ..+-...+-+.++|++|.|||++|+.+++. ....| +.+..+
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~s------ 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVGS------ 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH------
Confidence 46889999888888766321 0 001134567889999999999999999984 32232 222111
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCC----------hhh----HhhhhccCC--CCCC
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNES----------YND----WVELSHPFE--AGAP 320 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~----w~~~~~~l~--~~~~ 320 (946)
. +.....+. ....+...+.......+.+|+||++.... ... +..+...+. ....
T Consensus 214 ~----l~~k~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 214 E----FVQKYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred H----HHHHhcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 1 11111111 11222233333345678999999975310 001 112222221 1124
Q ss_pred CcEEEEEcCChhHHHh--hC---CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 043855 321 GSKIIVTTRNQGVAAI--MG---TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLP 388 (946)
Q Consensus 321 gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlP 388 (946)
+..||+||...+.... .. -...+.+...+.++..++|....... ......++ ..+++.+.|+-
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~-~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM-NLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC-CCCcccCH----HHHHHHcCCCC
Confidence 5678888876543211 11 23457888888888888887654321 11222233 34556666553
No 194
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.13 E-value=0.011 Score=62.18 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=29.9
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHH
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLI 259 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 259 (946)
..+.+.|++|+|||+||+.++. .... ...++++....+..+++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 3556899999999999999986 2322 24556666665555543
No 195
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.02 Score=62.02 Aligned_cols=182 Identities=14% Similarity=0.071 Sum_probs=102.8
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc---ccccCCc-----eEEEEeCCCCCHHHHHHHH
Q 043855 191 IEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDR---VRDHFDL-----KAWTCVSDDFDVVRLIKVI 262 (946)
Q Consensus 191 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~F~~-----~~wv~~~~~~~~~~~~~~i 262 (946)
..-+++.+.+..+ .-.+.+.+.|+.|+||+++|..++.--- ....-.| .-++.....+|+..+.
T Consensus 9 ~~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--- 80 (334)
T PRK07993 9 PDYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT--- 80 (334)
T ss_pred HHHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe---
Confidence 3445666766543 2457788999999999999998775210 0000000 0011111111111100
Q ss_pred HHHhcCCCCCCcccHHHHHH---HHHH-HhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh-hHH-Hh
Q 043855 263 LRSFVADPNVDNRDLILLQL---QLKK-QLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ-GVA-AI 336 (946)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~---~l~~-~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~-~v~-~~ 336 (946)
.+.....-.++++.. .+.. -..+++=++|+|++...+......+...+..-..++.+|++|.+. .+. ..
T Consensus 81 -----p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 81 -----PEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL 155 (334)
T ss_pred -----cccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 000001122333222 2221 123567799999998877777778877776655667766666653 444 33
Q ss_pred hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHH
Q 043855 337 MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTL 394 (946)
Q Consensus 337 ~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 394 (946)
......+.+.++++++..+.+.... + .+ .+.+..++..++|.|..+..+
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred HhccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 4456788999999999988876531 1 11 123667899999999755444
No 196
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.10 E-value=0.00062 Score=65.04 Aligned_cols=103 Identities=24% Similarity=0.261 Sum_probs=75.2
Q ss_pred cCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchh-cCCCCcEEecCCCCchhhchh--hhcccCccCee
Q 043855 592 LQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVN-KLYKLQTLLLEDCDRLKKLCA--SLGNLINLHHL 668 (946)
Q Consensus 592 ~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L 668 (946)
....-.+||++|.+..++ .+..+..|.+|.|.+|.|+.+-..+. .+++|++|.|.+| .+..+-+ -+..|++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCcccee
Confidence 345678899999888775 47788999999999999998855544 4678999999988 5555532 26678899999
Q ss_pred ecCCCCCcccccc----ccCCCCCCcccCceec
Q 043855 669 NNSNTDSLEEMPI----GIGKLTSLQTLCSFVV 697 (946)
Q Consensus 669 ~l~~~~~~~~~p~----~i~~l~~L~~L~~~~~ 697 (946)
.+-+|. ....+. -+.++++|++|+...+
T Consensus 119 tll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 888887 444332 1677888888865444
No 197
>PRK08181 transposase; Validated
Probab=97.10 E-value=0.00093 Score=69.63 Aligned_cols=101 Identities=21% Similarity=0.143 Sum_probs=53.8
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGK 291 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 291 (946)
.-+.|+|++|+|||.||..+.+. .......+.++++ .+++..+..... ....... +.. + .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~------~~~~~~~---l~~-l-~~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARR------ELQLESA---IAK-L-DK 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHh------CCcHHHH---HHH-H-hc
Confidence 45899999999999999999873 2222234455543 344444433211 1112222 222 2 23
Q ss_pred eEEEEEcCCCCCChhhHh-h-hhccCCCCCCCcEEEEEcCCh
Q 043855 292 KFLFVLDDVWNESYNDWV-E-LSHPFEAGAPGSKIIVTTRNQ 331 (946)
Q Consensus 292 r~LlVlDdv~~~~~~~w~-~-~~~~l~~~~~gs~iivTtR~~ 331 (946)
-=||||||+.......|. . +...+.....+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 459999999654333332 2 222222111123588888764
No 198
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=4.6e-05 Score=75.76 Aligned_cols=102 Identities=21% Similarity=0.239 Sum_probs=72.6
Q ss_pred cCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchh--hhcccCccCeee
Q 043855 592 LQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCA--SLGNLINLHHLN 669 (946)
Q Consensus 592 ~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~ 669 (946)
+.+.+.|++.||.++.+. .+.+|+.|++|.||-|.|+.| ..+..|++|+.|.|+.| .+..+-+ .+.++++|+.|-
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 456677888888887763 356788888888888888877 45778888888888887 4554432 367888888888
Q ss_pred cCCCCCccccccc-----cCCCCCCcccCcee
Q 043855 670 NSNTDSLEEMPIG-----IGKLTSLQTLCSFV 696 (946)
Q Consensus 670 l~~~~~~~~~p~~-----i~~l~~L~~L~~~~ 696 (946)
|..|...+.-+.. +.-|++|+.|+...
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 8887655444433 55677777775443
No 199
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.08 E-value=0.0078 Score=67.06 Aligned_cols=226 Identities=18% Similarity=0.130 Sum_probs=122.4
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCce
Q 043855 213 VLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKK 292 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr 292 (946)
++.|.|+-++||||+++.+... .... .+.+..-+......-+.+.+.. +...-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~~------------------~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLRA------------------YIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHHH------------------HHHhhccCC
Confidence 9999999999999999777663 2222 4444433321111111111111 111111278
Q ss_pred EEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhHH-----Hh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCC
Q 043855 293 FLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGVA-----AI-MGTVPAYQLKKLSDHDCLALFARHSLGTRD 366 (946)
Q Consensus 293 ~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~-----~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~ 366 (946)
..++||.|... .+|......+.+.++. +|++|+-+..+. .. .+....+++-|||-.|...+....+
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----- 167 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----- 167 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc-----
Confidence 89999999765 5899988888877666 899988875443 22 2345678999999999876543100
Q ss_pred CCCchhHHHHHHHHHHhcCCChhHHHHHhhhhccCCChHHHHHHHhhhcccCcccccccchhhhhhccCCChhHHHHhhh
Q 043855 367 FSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRGHHDKCDWEGVLRAKIWELPEERASFIPDLAISYRHLPPTLKQCFAY 446 (946)
Q Consensus 367 ~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~ 446 (946)
.....+. .-.=.-..||.|-++..-...-. ..+....+...+..+.... .+ +..++..+.+
T Consensus 168 --~~~~~~~-~f~~Yl~~GGfP~~v~~~~~~~~---~~~~~~~~~~~Di~~~~~~------------~~-~~~~k~i~~~ 228 (398)
T COG1373 168 --EPSKLEL-LFEKYLETGGFPESVKADLSEKK---LKEYLDTILKRDIIERGKI------------EN-ADLMKRILRF 228 (398)
T ss_pred --chhHHHH-HHHHHHHhCCCcHHHhCcchhhH---HHHHHHHHHHHHHHHHcCc------------cc-HHHHHHHHHH
Confidence 0001111 22333457899988754332111 1112222222211111100 01 1344555555
Q ss_pred hccCCCCCcccHHHHHHHHHHhCCccccCCCCcHHHHHHHHHHHHHhCcCCccc
Q 043855 447 CSLFPKGYEFEEKEIILLWSAVGFLDHVQSGNASEDLGRDIFRELCARSFFQES 500 (946)
Q Consensus 447 ~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~~~l~~~~ 500 (946)
++..+ +..+....+.+.+- ....++...|++-|.+.-++...
T Consensus 229 l~~~~-g~~~s~~~la~~l~-----------~is~~Ti~~Yl~~le~~fll~~~ 270 (398)
T COG1373 229 LASNI-GSPISYSSLARELK-----------GISKDTIRKYLSYLEDAFLLFLV 270 (398)
T ss_pred HHhhc-CCccCHHHHHHHHh-----------ccchHHHHHHHHHHHHhhheEEe
Confidence 55542 44455566655541 11256778888888887777643
No 200
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.07 E-value=0.0055 Score=70.94 Aligned_cols=178 Identities=13% Similarity=0.148 Sum_probs=92.4
Q ss_pred cccccchhHHHHHHHHHh---cCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLL---RDDL---MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.+++|.+..++++.+++. .... .+....+-+.++|++|.|||+||+.+++.. ... ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----HH
Confidence 468898887766655443 1110 011234558899999999999999999742 222 222221 11
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCC----------hhhHhhhhc----cCC--CCCCC
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNES----------YNDWVELSH----PFE--AGAPG 321 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~w~~~~~----~l~--~~~~g 321 (946)
+ .....+ .....+...+.......+.+|+|||++... ...+..... .+. ....+
T Consensus 124 ~----~~~~~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 124 F----VEMFVG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred H----HHHHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 1 111111 112223334444445677899999995421 111222111 111 12234
Q ss_pred cEEEEEcCChhHH-Hhh----CCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCC
Q 043855 322 SKIIVTTRNQGVA-AIM----GTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGL 387 (946)
Q Consensus 322 s~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~Gl 387 (946)
..||.||...... ..+ .-...+.+...+.++-.++|..+.-.... ... .....+++.+.|.
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~----~~l~~la~~t~G~ 259 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APD----VDLKAVARRTPGF 259 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccc----hhHHHHHHhCCCC
Confidence 4566677654321 111 12346888888888888888876533211 111 1234677777774
No 201
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.04 E-value=0.007 Score=73.47 Aligned_cols=120 Identities=17% Similarity=0.182 Sum_probs=69.9
Q ss_pred cccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
..++|.+..++.|.+.+.....+ ......++.++|+.|+|||+||+.++.. . +...+.++.++..+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 45889888889888887643210 1123457899999999999999999973 2 23345666555322111
Q ss_pred HHHHHhcCCCCC-CcccHHHHHHHHHHHhCCc-eEEEEEcCCCCCChhhHhhhhccCC
Q 043855 261 VILRSFVADPNV-DNRDLILLQLQLKKQLSGK-KFLFVLDDVWNESYNDWVELSHPFE 316 (946)
Q Consensus 261 ~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~w~~~~~~l~ 316 (946)
+...++..+.. .......+ .+.++.+ .-+++||+++..+.+.+..+...+.
T Consensus 526 -~~~lig~~~gyvg~~~~~~l----~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLL----TEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred -HHHHhcCCCCCcccchhhHH----HHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 11112221111 11122223 3333333 4599999998777666666655544
No 202
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.018 Score=62.98 Aligned_cols=160 Identities=17% Similarity=0.217 Sum_probs=94.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQL 288 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 288 (946)
..+..+.+.|++|+|||+||..++.+ ..|..+--++..+..... +......+.......-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSpe~miG~s----------------EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISPEDMIGLS----------------ESAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeChHHccCcc----------------HHHHHHHHHHHHHHhh
Confidence 45677889999999999999999963 456654433221111110 1222333444555566
Q ss_pred CCceEEEEEcCCCCCChhhHhhhhcc---------------CCCCCCCcEEEEEcCChhHHHhhCC----CCcEeCCCCC
Q 043855 289 SGKKFLFVLDDVWNESYNDWVELSHP---------------FEAGAPGSKIIVTTRNQGVAAIMGT----VPAYQLKKLS 349 (946)
Q Consensus 289 ~~kr~LlVlDdv~~~~~~~w~~~~~~---------------l~~~~~gs~iivTtR~~~v~~~~~~----~~~~~l~~L~ 349 (946)
+..--.||+||+.. .-+|-.+... .|+.+..--|+-||....|...|+- ...+.++.++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 67778999999943 3455443322 2222222235557777888888763 3468888888
Q ss_pred h-HHHHHHHHHhh-cCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhh
Q 043855 350 D-HDCLALFARHS-LGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLL 398 (946)
Q Consensus 350 ~-~e~~~Lf~~~a-~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 398 (946)
. ++..+.++..- |. +.+.+.++++...+| +-..|+.+-.++
T Consensus 674 ~~~~~~~vl~~~n~fs------d~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIFS------DDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred chHHHHHHHHHccCCC------cchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 7 77777776532 32 234556667777666 333344444433
No 203
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.04 E-value=0.00059 Score=72.95 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=42.9
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDD 235 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (946)
+++|.++.++++++++.....+.....+++.++|++|.||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999976543223456899999999999999999999843
No 204
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.02 E-value=0.0001 Score=85.92 Aligned_cols=236 Identities=20% Similarity=0.211 Sum_probs=113.8
Q ss_pred CCCCcEEeccCCC-ccc--cccchhcCCCCcEEecCCC-Cchhhc----hhhhcccCccCeeecCCCCCccccccccCCC
Q 043855 615 LRHLRYLNLSRTL-IEV--LPESVNKLYKLQTLLLEDC-DRLKKL----CASLGNLINLHHLNNSNTDSLEEMPIGIGKL 686 (946)
Q Consensus 615 l~~Lr~L~Ls~~~-i~~--lp~~i~~L~~L~~L~L~~~-~~l~~l----p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 686 (946)
++.|+.|.+.++. +.. +-.....+++|+.|++++| ...... +.....+.+|++|+++++..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i---------- 256 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV---------- 256 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc----------
Confidence 5666666666542 333 3344556777777777762 111111 122344566666666665522
Q ss_pred CCCcccCceecCCCCCCChhcccc-ccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhH
Q 043855 687 TSLQTLCSFVVGKDSGSGLRELKL-LKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETE 765 (946)
Q Consensus 687 ~~L~~L~~~~~~~~~~~~~~~L~~-L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 765 (946)
++..+..+.. ++.|+ .|.+..+..+ ...++......+++|++|+|++|.... +
T Consensus 257 --------------sd~~l~~l~~~c~~L~-~L~l~~c~~l--t~~gl~~i~~~~~~L~~L~l~~c~~~~---------d 310 (482)
T KOG1947|consen 257 --------------TDIGLSALASRCPNLE-TLSLSNCSNL--TDEGLVSIAERCPSLRELDLSGCHGLT---------D 310 (482)
T ss_pred --------------CchhHHHHHhhCCCcc-eEccCCCCcc--chhHHHHHHHhcCcccEEeeecCccch---------H
Confidence 2222222221 22232 3333223221 334445556667788888888865542 2
Q ss_pred HhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCC--CCC--CCCCCCCCceeeeccccCceeeC
Q 043855 766 KGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCT--SLP--SVGQLPSLKHLVVRRMSRVKRLG 841 (946)
Q Consensus 766 ~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~--~l~--~l~~l~~L~~L~L~~~~~l~~~~ 841 (946)
.........+++|+.|.+.+... ++.++.+.+.++.... .+. ....+++|+.+.|..|. ....+
T Consensus 311 ~~l~~~~~~c~~l~~l~~~~~~~-----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~ 378 (482)
T KOG1947|consen 311 SGLEALLKNCPNLRELKLLSLNG-----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLG 378 (482)
T ss_pred HHHHHHHHhCcchhhhhhhhcCC-----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcc
Confidence 22233344577777766544321 3456666665554422 222 34566777777776654 33332
Q ss_pred ccccCCCCCCcCCCcceeeccCCcccc-cccccCCCCCCCCCCcccEeeecCCcCccccCC----CCCCCCCEEEEcccc
Q 043855 842 SEFYGNDCPIPFLCLETLCFEDMREWE-DWIPCGSSQGIELFPNLREFRILRCPKLQGTLP----ERLPELKMFVIQSCE 916 (946)
Q Consensus 842 ~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp----~~l~~L~~L~i~~c~ 916 (946)
. .+.+.+|+.+. .+. .. ...++.|+.|++..|...+...- ....+++.+++.+|+
T Consensus 379 ~---------------~~~l~gc~~l~~~l~-~~----~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 379 L---------------ELSLRGCPNLTESLE-LR----LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred h---------------HHHhcCCcccchHHH-HH----hccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 1 12222333321 111 00 12233377777777765542111 114556667777776
Q ss_pred cc
Q 043855 917 EL 918 (946)
Q Consensus 917 ~l 918 (946)
.+
T Consensus 439 ~~ 440 (482)
T KOG1947|consen 439 VI 440 (482)
T ss_pred cc
Confidence 55
No 205
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.99 E-value=0.0054 Score=75.26 Aligned_cols=122 Identities=16% Similarity=0.161 Sum_probs=68.7
Q ss_pred cccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
..++|.+..++.+...+.....+ .+....++.++|+.|+|||++|+.+++. ....-...+.++++.-...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~~----- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFMEK----- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhhh-----
Confidence 45889999999998888643210 1123357889999999999999999963 2111123344544432111
Q ss_pred HHHHHhcCCCCC-Cc-ccHHHHHHHHHHHhCCc-eEEEEEcCCCCCChhhHhhhhccCC
Q 043855 261 VILRSFVADPNV-DN-RDLILLQLQLKKQLSGK-KFLFVLDDVWNESYNDWVELSHPFE 316 (946)
Q Consensus 261 ~il~~l~~~~~~-~~-~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~w~~~~~~l~ 316 (946)
.....+.+.++. .. ..... +.+.++.+ .-+|+|||+...+...+..+...+.
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~----l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGY----LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred hhHHHHhCCCCcccccchhHH----HHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHh
Confidence 112223222221 11 11112 22333222 3699999998777667766655543
No 206
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0028 Score=71.33 Aligned_cols=189 Identities=17% Similarity=0.142 Sum_probs=110.6
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHH
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILR 264 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 264 (946)
++||-+.-...|.+.+.... -..-....|+-|+||||+|+-++...--. -| ....+++.-..-++|..
T Consensus 17 evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~------~~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCE------NG-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCC------CC-CCCCcchhhhhhHhhhc
Confidence 47999999999999886543 34556778999999999999888531111 01 11111111111122211
Q ss_pred H-------hcCCCCCCcccHHHHHHHHHHH-hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh-hHH-
Q 043855 265 S-------FVADPNVDNRDLILLQLQLKKQ-LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ-GVA- 334 (946)
Q Consensus 265 ~-------l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~-~v~- 334 (946)
. +.........+.+++.+.+.-. .+++-=+.|+|+|.-.+...|..+...+.......+.|+.|.+. .+.
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 1 0000010122222222222211 13455588999998888888999888776555566666655553 443
Q ss_pred HhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChh
Q 043855 335 AIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPL 389 (946)
Q Consensus 335 ~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPL 389 (946)
......+.|.++.++.++-...+...+-...-. ..++....|+++.+|..-
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~----~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN----IEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCc----cCHHHHHHHHHHcCCChh
Confidence 334466889999999999888888766433221 223455667777777554
No 207
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.96 E-value=0.003 Score=77.23 Aligned_cols=137 Identities=16% Similarity=0.142 Sum_probs=75.8
Q ss_pred cccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
..++|.+..++.+.+.+.....+ ......++.++|+.|+|||.||+.++.. .-+.....+-++++...+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~~--- 640 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAHT--- 640 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhhh---
Confidence 46899999999999888543110 1234568999999999999999988763 212122223333332211111
Q ss_pred HHHHHhcCCCCC--CcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCC-----------CCcEEEEE
Q 043855 261 VILRSFVADPNV--DNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGA-----------PGSKIIVT 327 (946)
Q Consensus 261 ~il~~l~~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~-----------~gs~iivT 327 (946)
...+.+.+.. .......+...+++ ...-+|+||++...+...++.+...+..+. ..+-||+|
T Consensus 641 --~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 641 --VSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred --hccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 1122222211 11111223333332 445799999997766666666655443331 33456667
Q ss_pred cCC
Q 043855 328 TRN 330 (946)
Q Consensus 328 tR~ 330 (946)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 654
No 208
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.92 E-value=0.003 Score=67.51 Aligned_cols=122 Identities=15% Similarity=0.152 Sum_probs=69.6
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 043855 188 GREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFV 267 (946)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 267 (946)
+|....+...+++..-.. ....+-+.|+|..|+|||.||.++++... +..+ .+.+++++ +++.++-....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~~------~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHFP------EFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEHH------HHHHHHHHHHh
Confidence 444445555566643321 12346789999999999999999999532 2222 35566553 44455544432
Q ss_pred CCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhh--hhccC-CCC-CCCcEEEEEcCC
Q 043855 268 ADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVE--LSHPF-EAG-APGSKIIVTTRN 330 (946)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~--~~~~l-~~~-~~gs~iivTtR~ 330 (946)
.. +.. ..+.. + .+-=||||||+..+....|.. +...+ ... ..+-.+|+||.-
T Consensus 205 ~~------~~~---~~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG------SVK---EKIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC------cHH---HHHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 111 22222 2 245689999998776667854 43333 211 234568888864
No 209
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.88 E-value=0.0047 Score=76.09 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=71.1
Q ss_pred cccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
..++|.+..++.+...+.....+ ......++.++|+.|+|||++|+.+... ....-...+.++++...+...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccch---
Confidence 45899999999999988753210 1123467889999999999999999973 222222334455554322111
Q ss_pred HHHHHhcCCCCC--CcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCC
Q 043855 261 VILRSFVADPNV--DNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFE 316 (946)
Q Consensus 261 ~il~~l~~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~ 316 (946)
...+.+.++. .......+...++. ....+|+||++...+...+..+...+.
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~ 692 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLD 692 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHh
Confidence 1122222211 11112222222221 233489999998877777777766554
No 210
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.81 E-value=0.0041 Score=63.96 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=35.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRL 258 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 258 (946)
....++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 35689999999999999999999874 22334568899887 5665443
No 211
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.79 E-value=0.0073 Score=65.02 Aligned_cols=102 Identities=21% Similarity=0.173 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCc-eEEEEeCCC-CCHHHHHHHHHHHhcCCCC
Q 043855 194 KEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDL-KAWTCVSDD-FDVVRLIKVILRSFVADPN 271 (946)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~-~~~~~~~~~il~~l~~~~~ 271 (946)
.++++.+..-. ...-+.|+|.+|+|||||++.+++... ..+-+. .+|+.+.+. .++.++.+.+...+.....
T Consensus 121 ~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~ 194 (380)
T PRK12608 121 MRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTF 194 (380)
T ss_pred HhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecC
Confidence 45778776542 334568999999999999999887321 112233 467777655 4678888888777665432
Q ss_pred CCccc----HHHHHHHHHHHh--CCceEEEEEcCCC
Q 043855 272 VDNRD----LILLQLQLKKQL--SGKKFLFVLDDVW 301 (946)
Q Consensus 272 ~~~~~----~~~~~~~l~~~l--~~kr~LlVlDdv~ 301 (946)
..... .......+.+++ ++++.+||+|++.
T Consensus 195 de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 195 DRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 11111 111111122222 5899999999983
No 212
>PRK09183 transposase/IS protein; Provisional
Probab=96.77 E-value=0.0016 Score=68.09 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+.|+|++|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 56779999999999999999763
No 213
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.76 E-value=0.0026 Score=62.94 Aligned_cols=128 Identities=22% Similarity=0.214 Sum_probs=65.7
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCC----CC-----CHHH-
Q 043855 188 GREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSD----DF-----DVVR- 257 (946)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~----~~-----~~~~- 257 (946)
.+..+....++.|.. ..++.+.|++|.|||.||-+..-+.-..+.|+.++++.-.- .. +..+
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 455666677777763 25899999999999999998887654457787777654322 11 0000
Q ss_pred ------HHHHHHHHhcCCCCCCcccHHHHHHH------HHHHhCCc---eEEEEEcCCCCCChhhHhhhhccCCCCCCCc
Q 043855 258 ------LIKVILRSFVADPNVDNRDLILLQLQ------LKKQLSGK---KFLFVLDDVWNESYNDWVELSHPFEAGAPGS 322 (946)
Q Consensus 258 ------~~~~il~~l~~~~~~~~~~~~~~~~~------l~~~l~~k---r~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs 322 (946)
=+.+.+..+. .....+.+... --.+++|+ ..+||+|++.+.+..++..+...+ +.||
T Consensus 76 ~~p~~~p~~d~l~~~~-----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~s 147 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGS 147 (205)
T ss_dssp --TTTHHHHHHHTTTS------TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-
T ss_pred HHHHHHHHHHHHHHHh-----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCc
Confidence 0111112211 11112222111 01345664 469999999988777777775544 5789
Q ss_pred EEEEEcCCh
Q 043855 323 KIIVTTRNQ 331 (946)
Q Consensus 323 ~iivTtR~~ 331 (946)
|||++--..
T Consensus 148 kii~~GD~~ 156 (205)
T PF02562_consen 148 KIIITGDPS 156 (205)
T ss_dssp EEEEEE---
T ss_pred EEEEecCce
Confidence 999987544
No 214
>PRK06526 transposase; Provisional
Probab=96.74 E-value=0.0024 Score=66.29 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.-+.|+|++|+|||+||..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 56899999999999999999874
No 215
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.74 E-value=0.0094 Score=65.32 Aligned_cols=142 Identities=15% Similarity=0.110 Sum_probs=85.1
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc-------------------cCCceE
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRD-------------------HFDLKA 245 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 245 (946)
.++|-+....++..+..... .....+.++|++|+||||+|..+.+...-.. ...-+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 36777888888888887542 1234599999999999999999987421000 112344
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCc
Q 043855 246 WTCVSDDFD---VVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGS 322 (946)
Q Consensus 246 wv~~~~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs 322 (946)
.+..+.... ..+..+++.+....... .++.-++++|+++..+.+.-..+...+......+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 444444433 23333333333322111 3567899999998776655566666665555677
Q ss_pred EEEEEcCCh-hHHHh-hCCCCcEeCCC
Q 043855 323 KIIVTTRNQ-GVAAI-MGTVPAYQLKK 347 (946)
Q Consensus 323 ~iivTtR~~-~v~~~-~~~~~~~~l~~ 347 (946)
++|++|... .+... -.....+++.+
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCC
Confidence 888877743 33321 12345667766
No 216
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.70 E-value=0.032 Score=54.63 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=35.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhc
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.++||-++-++++.-+-.+ ++.+-+.|.||+|+||||-+..+++
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 4699999988888766643 4567889999999999998877776
No 217
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.004 Score=73.00 Aligned_cols=123 Identities=15% Similarity=0.197 Sum_probs=75.3
Q ss_pred cccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
..++|-+..++.+.+.+.....+ ......++..+|+.|||||.||++++.. .-+.=+..+-++.|+...-..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~EkHs--- 565 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYMEKHS--- 565 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHHHHH---
Confidence 46899999999999888654321 2345678889999999999999999872 211113455555555332222
Q ss_pred HHHHHhcCCCCC--CcccHHHHHHHHHHHhCCceE-EEEEcCCCCCChhhHhhhhccCCC
Q 043855 261 VILRSFVADPNV--DNRDLILLQLQLKKQLSGKKF-LFVLDDVWNESYNDWVELSHPFEA 317 (946)
Q Consensus 261 ~il~~l~~~~~~--~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~w~~~~~~l~~ 317 (946)
...+-+.++. .-..- ..|-+..+.++| +|.||++...+.+-.+-+...|.+
T Consensus 566 --VSrLIGaPPGYVGyeeG----G~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 566 --VSRLIGAPPGYVGYEEG----GQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred --HHHHhCCCCCCceeccc----cchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 2333333331 11112 234555677877 888999977665555555555543
No 218
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.68 E-value=0.00086 Score=67.02 Aligned_cols=103 Identities=25% Similarity=0.245 Sum_probs=58.1
Q ss_pred ccCceeEEEecCCCCccCCccccCCCCCcEEeccCC--Ccc-ccccchhcCCCCcEEecCCCCchhh---chhhhcccCc
Q 043855 591 RLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRT--LIE-VLPESVNKLYKLQTLLLEDCDRLKK---LCASLGNLIN 664 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~---lp~~i~~L~~ 664 (946)
.+..|..|++.++.++++ ..+..|++|++|.++.| ++. .++-...++++|++|++++| .++. ++ .+.++.+
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~-pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLR-PLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccc-hhhhhcc
Confidence 444555555666655544 23556677777777777 443 45555556677777777777 3332 22 1455666
Q ss_pred cCeeecCCCCCcccccc----ccCCCCCCcccCceec
Q 043855 665 LHHLNNSNTDSLEEMPI----GIGKLTSLQTLCSFVV 697 (946)
Q Consensus 665 L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~~~ 697 (946)
|..|++..|. ...+-. .+.-+++|..|+.+.+
T Consensus 118 L~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCC-ccccccHHHHHHHHhhhhcccccccc
Confidence 7777777665 222211 1344566666655444
No 219
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.67 E-value=0.0011 Score=64.98 Aligned_cols=101 Identities=22% Similarity=0.267 Sum_probs=50.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSG 290 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 290 (946)
..-+.|+|.+|+|||.||..+.+..- ...+ .+.|+++ .+++..+ ..... ....... +... .
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~-~~g~-~v~f~~~------~~L~~~l----~~~~~--~~~~~~~---~~~l-~- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI-RKGY-SVLFITA------SDLLDEL----KQSRS--DGSYEEL---LKRL-K- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEEH------HHHHHHH----HCCHC--CTTHCHH---HHHH-H-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc-cCCc-ceeEeec------Cceeccc----ccccc--ccchhhh---cCcc-c-
Confidence 35689999999999999999987422 2222 3556654 3343333 22211 1112222 2222 2
Q ss_pred ceEEEEEcCCCCCChhhHhhh--hccCCCC-CCCcEEEEEcCCh
Q 043855 291 KKFLFVLDDVWNESYNDWVEL--SHPFEAG-APGSKIIVTTRNQ 331 (946)
Q Consensus 291 kr~LlVlDdv~~~~~~~w~~~--~~~l~~~-~~gs~iivTtR~~ 331 (946)
+-=||||||+......+|..- ...+... .++ .+||||.-.
T Consensus 108 ~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 235788999977655555431 1111111 123 578888753
No 220
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.67 E-value=0.0074 Score=74.17 Aligned_cols=137 Identities=14% Similarity=0.145 Sum_probs=76.6
Q ss_pred cccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
..++|-+..++.|.+.+.....+ ......++.++|+.|+|||+||+.++.. .-+.-...+-++.++-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~- 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVS- 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHH-
Confidence 56899999999998887532210 1223456789999999999999999872 21111233444444432222111
Q ss_pred HHHHHhcCCCCC-CcccHHHHHHHHHHHhCCce-EEEEEcCCCCCChhhHhhhhccCCCC-----------CCCcEEEEE
Q 043855 261 VILRSFVADPNV-DNRDLILLQLQLKKQLSGKK-FLFVLDDVWNESYNDWVELSHPFEAG-----------APGSKIIVT 327 (946)
Q Consensus 261 ~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~w~~~~~~l~~~-----------~~gs~iivT 327 (946)
.-++..+.. ....... +.+.++.++ -+++||++...+.+.+..+...+..+ -..+-||+|
T Consensus 586 ---~l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 586 ---KLIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred ---HhcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 111211110 1111222 334444454 58999999877766676666555432 133456666
Q ss_pred cCC
Q 043855 328 TRN 330 (946)
Q Consensus 328 tR~ 330 (946)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 664
No 221
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.63 E-value=0.0063 Score=61.76 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=36.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLI 259 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 259 (946)
...+++.|+|++|+|||++|.+++.. ....-..++|++... ++..++.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHH
Confidence 35689999999999999999998873 323346789999976 6665543
No 222
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.63 E-value=0.0073 Score=62.64 Aligned_cols=92 Identities=23% Similarity=0.201 Sum_probs=55.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccccccc----CCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-----------C
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDH----FDLKAWTCVSDDFDVVRLIKVILRSFVADPNV-----------D 273 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-----------~ 273 (946)
....++.|+|.+|+|||+||.+++........ -..++|++....++..++ .++++........ .
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCC
Confidence 35689999999999999999999753222221 357899999888776544 4444443322110 1
Q ss_pred cccHHHHHHHHHHHhC-C-ceEEEEEcCCC
Q 043855 274 NRDLILLQLQLKKQLS-G-KKFLFVLDDVW 301 (946)
Q Consensus 274 ~~~~~~~~~~l~~~l~-~-kr~LlVlDdv~ 301 (946)
..+.......+...+. . +.-+||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 1122222233433443 3 56688888873
No 223
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.052 Score=57.03 Aligned_cols=189 Identities=16% Similarity=0.182 Sum_probs=102.8
Q ss_pred cccccchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLRDD-------LMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
.++=|-++.+++|.+...-+- .-+-..++=|.++|++|.|||-||++|++ +....| +.|..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----Irvvg----- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVG----- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEecc-----
Confidence 345678888888887664321 01234567788999999999999999999 444444 22222
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhC-CceEEEEEcCCCCCC-----------h---hhHhhhhccCCC--CC
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLS-GKKFLFVLDDVWNES-----------Y---NDWVELSHPFEA--GA 319 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~-----------~---~~w~~~~~~l~~--~~ 319 (946)
.++.+..-++.. .+...+.+.-+ ..+..|++|.++... . ...-++...+.. ..
T Consensus 219 ---SElVqKYiGEGa-------RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 219 ---SELVQKYIGEGA-------RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ---HHHHHHHhccch-------HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 223333333221 23333333333 458999999885311 0 011122222221 12
Q ss_pred CCcEEEEEcCChhHHHh--hC---CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCCh----hH
Q 043855 320 PGSKIIVTTRNQGVAAI--MG---TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLP----LA 390 (946)
Q Consensus 320 ~gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlP----La 390 (946)
...|||..|...++... +. -...+++..-+.+.-.++|.-++-.- .....-+++ .+++.|.|.- -|
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM-~l~~dvd~e----~la~~~~g~sGAdlka 363 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM-NLADDVDLE----LLARLTEGFSGADLKA 363 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-cCccCcCHH----HHHHhcCCCchHHHHH
Confidence 45689998877655432 11 23457776444444466777665332 112223333 4556666553 45
Q ss_pred HHHHhhhhc
Q 043855 391 AKTLGGLLR 399 (946)
Q Consensus 391 i~~~~~~l~ 399 (946)
|.+=|++++
T Consensus 364 ictEAGm~A 372 (406)
T COG1222 364 ICTEAGMFA 372 (406)
T ss_pred HHHHHhHHH
Confidence 556666654
No 224
>PRK04132 replication factor C small subunit; Provisional
Probab=96.61 E-value=0.046 Score=65.80 Aligned_cols=156 Identities=13% Similarity=0.043 Sum_probs=97.9
Q ss_pred cCCChHHHHHHHHhccccccccC-CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEE
Q 043855 219 MGGLGKTTLAQLVYNDDRVRDHF-DLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVL 297 (946)
Q Consensus 219 ~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVl 297 (946)
|.++||||+|..++++. ....+ ...+-+++++..++.. +++++..+..... .-..+.-++||
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~---------------~~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGINV-IREKVKEFARTKP---------------IGGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC---------------cCCCCCEEEEE
Confidence 77899999999999852 11222 2356677776555543 3444444322111 00124579999
Q ss_pred cCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh-hHHHh-hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHH
Q 043855 298 DDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ-GVAAI-MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEK 375 (946)
Q Consensus 298 Ddv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~ 375 (946)
|+++..+..+...++..+..-...+++|++|.+. .+... ...+..+++.++++++..+.+...+....- .. -.+
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~i---~~e 712 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-EL---TEE 712 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-CC---CHH
Confidence 9999888778888877776544566666665553 33322 234678999999999998887765532211 11 135
Q ss_pred HHHHHHHhcCCChhHHHHHh
Q 043855 376 IGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 376 ~~~~i~~~~~GlPLai~~~~ 395 (946)
....|++.++|.+-.+..+-
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 67889999999885544443
No 225
>PRK06921 hypothetical protein; Provisional
Probab=96.60 E-value=0.0055 Score=64.20 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=27.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccccccc-CCceEEEEe
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDH-FDLKAWTCV 249 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~wv~~ 249 (946)
...+.++|..|+|||+||.++++. +... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 467899999999999999999984 3322 234566654
No 226
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.57 E-value=0.096 Score=57.14 Aligned_cols=200 Identities=12% Similarity=0.076 Sum_probs=116.3
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHH-HHHhccccccccCCceEEEEeCCC---CCHHHHHHHHHH
Q 043855 189 REIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLA-QLVYNDDRVRDHFDLKAWTCVSDD---FDVVRLIKVILR 264 (946)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~il~ 264 (946)
|.+..++|..||.... -..|.|.||-|+||+.|+ .++..+.+. +..+++.+- -+-...+..++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 5677899999997653 379999999999999999 777775433 344444321 112223333333
Q ss_pred HhcC-----------------------CCCC-CcccHHHHHHH-------HHH-------------------HhC---Cc
Q 043855 265 SFVA-----------------------DPNV-DNRDLILLQLQ-------LKK-------------------QLS---GK 291 (946)
Q Consensus 265 ~l~~-----------------------~~~~-~~~~~~~~~~~-------l~~-------------------~l~---~k 291 (946)
+++- .... ......++... |++ +|+ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 3322 1111 11111122111 111 111 12
Q ss_pred eEEEEEcCCCCCC---------hhhHhhhhccCCCCCCCcEEEEEcCChhHHHhhC------CCCcEeCCCCChHHHHHH
Q 043855 292 KFLFVLDDVWNES---------YNDWVELSHPFEAGAPGSKIIVTTRNQGVAAIMG------TVPAYQLKKLSDHDCLAL 356 (946)
Q Consensus 292 r~LlVlDdv~~~~---------~~~w~~~~~~l~~~~~gs~iivTtR~~~v~~~~~------~~~~~~l~~L~~~e~~~L 356 (946)
|=+||+|+.-... ..+|..... ..+-..||++|-+......+. ....+.|.-.+.+.|..+
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 5689999985422 123543221 124457999888765544332 345788999999999999
Q ss_pred HHHhhcCCCCC------------CCc----hhHHHHHHHHHHhcCCChhHHHHHhhhhccCCCh
Q 043855 357 FARHSLGTRDF------------SSH----KSLEKIGREIVTKCDGLPLAAKTLGGLLRGHHDK 404 (946)
Q Consensus 357 f~~~a~~~~~~------------~~~----~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~ 404 (946)
...+.-..... ... .....-....++..||=-.-+..+++.++...++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 98876442110 000 1233344567788899888899999988876544
No 227
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.57 E-value=0.032 Score=55.12 Aligned_cols=120 Identities=23% Similarity=0.248 Sum_probs=68.3
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHH
Q 043855 183 EAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVI 262 (946)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 262 (946)
=..++|.+..++.+++--..-- .+....-|.+||--|.|||+|++++.+. +....-. -|.|.+.
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~---------- 122 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE---------- 122 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH----------
Confidence 3568999999998886443211 1123356789999999999999999984 3333211 2223221
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCC-CChhhHhhhhccCCCC---CCCcEEEEEcCC
Q 043855 263 LRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWN-ESYNDWVELSHPFEAG---APGSKIIVTTRN 330 (946)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~w~~~~~~l~~~---~~gs~iivTtR~ 330 (946)
+..+...+...|+ .+.+||+|..||..= .+...+..+...+..+ .+...++..|.+
T Consensus 123 ----------dl~~Lp~l~~~Lr--~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 ----------DLATLPDLVELLR--ARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ----------HHhhHHHHHHHHh--cCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 1111112222222 135799999999843 2334566676666533 233344444444
No 228
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.035 Score=59.98 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=44.7
Q ss_pred CceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh-hHHHh-hCCCCcEeCCCCChHHHHHHHHHh
Q 043855 290 GKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ-GVAAI-MGTVPAYQLKKLSDHDCLALFARH 360 (946)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~ 360 (946)
+++-++|+|++...+...-..+...+.....++.+|++|.+. .+... ......+.+.+++.++..+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 444555678887766555555555444333455566666654 34433 234578899999999998888653
No 229
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.52 E-value=0.011 Score=68.74 Aligned_cols=43 Identities=30% Similarity=0.347 Sum_probs=35.3
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhc
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
+++|.+..++.+...+... ....+.|+|++|+|||++|+.+++
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 5899999999998876443 234567999999999999999986
No 230
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.51 E-value=0.0011 Score=62.46 Aligned_cols=84 Identities=24% Similarity=0.082 Sum_probs=45.6
Q ss_pred EEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceE
Q 043855 214 LPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKF 293 (946)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~ 293 (946)
|.++|++|+|||+||+.++.. ... ...-+.++...+..+++...--. ..........+...+ .+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g~~~~~----~~~~~~~~~~l~~a~-----~~~~ 67 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIGSYDPS----NGQFEFKDGPLVRAM-----RKGG 67 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHCEEET-----TTTTCEEE-CCCTTH-----HEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEeccccccccceeeeeec----ccccccccccccccc-----ccee
Confidence 679999999999999999973 221 23346677777777665322111 110100000000001 1789
Q ss_pred EEEEcCCCCCChhhHhhh
Q 043855 294 LFVLDDVWNESYNDWVEL 311 (946)
Q Consensus 294 LlVlDdv~~~~~~~w~~~ 311 (946)
++|||++......-+..+
T Consensus 68 il~lDEin~a~~~v~~~L 85 (139)
T PF07728_consen 68 ILVLDEINRAPPEVLESL 85 (139)
T ss_dssp EEEESSCGG--HHHHHTT
T ss_pred EEEECCcccCCHHHHHHH
Confidence 999999975543334343
No 231
>PRK12377 putative replication protein; Provisional
Probab=96.51 E-value=0.0075 Score=62.11 Aligned_cols=102 Identities=19% Similarity=0.122 Sum_probs=55.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSG 290 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 290 (946)
...+.|+|.+|+|||+||.++++. .......++++++. +++..+-..... ...... .+ +.+ .
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~-----~~~~~~---~l-~~l-~ 162 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN-----GQSGEK---FL-QEL-C 162 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc-----cchHHH---HH-HHh-c
Confidence 357899999999999999999984 33333345666553 344444333211 111111 12 222 3
Q ss_pred ceEEEEEcCCCCCChhhHhh--hhccCCCC-CCCcEEEEEcCC
Q 043855 291 KKFLFVLDDVWNESYNDWVE--LSHPFEAG-APGSKIIVTTRN 330 (946)
Q Consensus 291 kr~LlVlDdv~~~~~~~w~~--~~~~l~~~-~~gs~iivTtR~ 330 (946)
+-=||||||+.......|.. +...+... .+.--+||||..
T Consensus 163 ~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 163 KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 56699999996544345543 22222111 112236777764
No 232
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.50 E-value=0.002 Score=58.94 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
||.|+|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999984
No 233
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.49 E-value=0.022 Score=59.03 Aligned_cols=172 Identities=23% Similarity=0.219 Sum_probs=93.2
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc-cccccCCceEEEEeCCCCCHH-HHHHHH
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDD-RVRDHFDLKAWTCVSDDFDVV-RLIKVI 262 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~F~~~~wv~~~~~~~~~-~~~~~i 262 (946)
.++|-.++..++-.|+.+... .+....+.|+|+.|.|||+|...+..+. ++..+ ..-|........+ -.++.|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~---~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGEN---FLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCe---EEEEEECccchhhHHHHHHH
Confidence 488999999999988865431 2344677899999999999998888761 23333 3344444433332 234555
Q ss_pred HHHhcCCCCC---CcccHHHHHHHHHHHhC------CceEEEEEcCCCCCChhhHhhhh-c----cCCCCCCCcEEEEEc
Q 043855 263 LRSFVADPNV---DNRDLILLQLQLKKQLS------GKKFLFVLDDVWNESYNDWVELS-H----PFEAGAPGSKIIVTT 328 (946)
Q Consensus 263 l~~l~~~~~~---~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~~~~w~~~~-~----~l~~~~~gs~iivTt 328 (946)
..++..+... ...+..+....+-..|+ +-+.++|+|.++-.....-..+. . .-....+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 5555332211 11222222233333332 23678888877432110000111 0 111233556777899
Q ss_pred CChh-------HHHhhCCCCcEeCCCCChHHHHHHHHHhh
Q 043855 329 RNQG-------VAAIMGTVPAYQLKKLSDHDCLALFARHS 361 (946)
Q Consensus 329 R~~~-------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a 361 (946)
|-.. |-..+..-.++-++.++-++..+++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 8642 22222333356667777788888877654
No 234
>PRK07261 topology modulation protein; Provisional
Probab=96.48 E-value=0.0049 Score=60.03 Aligned_cols=66 Identities=21% Similarity=0.287 Sum_probs=40.2
Q ss_pred EEEEEecCCChHHHHHHHHhcccccc-ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYNDDRVR-DHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGK 291 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 291 (946)
.|.|+|++|+||||||+.+.....+. -+.|...|-... ...+.++....+.+.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 59 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW----------------------QERDDDDMIADISNFLLKH 59 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc----------------------ccCCHHHHHHHHHHHHhCC
Confidence 47899999999999999998643221 234545552110 1122344555556666666
Q ss_pred eEEEEEcCCCC
Q 043855 292 KFLFVLDDVWN 302 (946)
Q Consensus 292 r~LlVlDdv~~ 302 (946)
+ .|+|+...
T Consensus 60 ~--wIidg~~~ 68 (171)
T PRK07261 60 D--WIIDGNYS 68 (171)
T ss_pred C--EEEcCcch
Confidence 6 67788743
No 235
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.48 E-value=0.0046 Score=60.82 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=28.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEE
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWT 247 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv 247 (946)
...+|.|+|++|+||||+|+.++. +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 457999999999999999999998 444445555554
No 236
>PRK04296 thymidine kinase; Provisional
Probab=96.46 E-value=0.005 Score=61.15 Aligned_cols=113 Identities=11% Similarity=-0.069 Sum_probs=61.0
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHHHHHhCC
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV-DNRDLILLQLQLKKQLSG 290 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~ 290 (946)
.++.|+|+.|.||||+|..++.. ...+-..++.+. ..++.+.....++.+++..... ......++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 57889999999999999988874 322222333331 1122222233345555432211 11233444444444 233
Q ss_pred ceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh
Q 043855 291 KKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ 331 (946)
Q Consensus 291 kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~ 331 (946)
+.-+||+|.+.--+.++..++...+. ..|..||+|.++.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 44589999995433222233333222 3577899999874
No 237
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.43 E-value=0.041 Score=54.81 Aligned_cols=178 Identities=15% Similarity=0.178 Sum_probs=95.7
Q ss_pred cccccchhHHH---HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 184 AHVYGREIEKK---EIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 184 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
.++||.++.+. -|++.|..++.-++-.++-|..+|++|.|||.+|+++++..++ .| +-|.. .+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~---l~vka------t~--- 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL---LLVKA------TE--- 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce---EEech------HH---
Confidence 56899887664 4567776665444557889999999999999999999995433 22 11111 11
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChh-hH-------hhhhccC----C--CCCCCcEEEE
Q 043855 261 VILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYN-DW-------VELSHPF----E--AGAPGSKIIV 326 (946)
Q Consensus 261 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~w-------~~~~~~l----~--~~~~gs~iiv 326 (946)
++.. ... ....++.....+.-+.-++++.+|.++....+ .+ .++..++ . ..+.|...|-
T Consensus 187 -liGe---hVG---dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 -LIGE---HVG---DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHH---Hhh---hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 1111 111 11111111122222346899999987542110 11 1111121 1 2345666677
Q ss_pred EcCChhHHHhhC---CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCC
Q 043855 327 TTRNQGVAAIMG---TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGL 387 (946)
Q Consensus 327 TtR~~~v~~~~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~Gl 387 (946)
.|.+.+.....- -...++..--+++|-.+++..++-.-. -....-.+.++++.+|.
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P-----lpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP-----LPVDADLRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC-----CccccCHHHHHHHhCCC
Confidence 777665543211 123456666678888888887763211 11112245566666665
No 238
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.38 E-value=0.019 Score=58.95 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=55.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSG 290 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 290 (946)
...+.++|.+|+|||+||.++++... ..-..+++++ +.+++..+-.... . ....... +.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it------~~~l~~~l~~~~~-~---~~~~~~~----~l~~l~- 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIIT------VADIMSAMKDTFS-N---SETSEEQ----LLNDLS- 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE------HHHHHHHHHHHHh-h---ccccHHH----HHHHhc-
Confidence 35789999999999999999998532 2223445553 3444444433331 1 1111222 222333
Q ss_pred ceEEEEEcCCCCCChhhHhh-hhccCCC-C-CCCcEEEEEcCC
Q 043855 291 KKFLFVLDDVWNESYNDWVE-LSHPFEA-G-APGSKIIVTTRN 330 (946)
Q Consensus 291 kr~LlVlDdv~~~~~~~w~~-~~~~l~~-~-~~gs~iivTtR~ 330 (946)
+.=+|||||+......+|.. +...+.+ . ...-.+||||..
T Consensus 162 ~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 34488899997665556654 1111111 1 112347777764
No 239
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.37 E-value=0.0025 Score=71.69 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=40.3
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhc
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
+++|.++.+++|++.|.....+.....+++.++|++|+||||||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999433221234557999999999999999999997
No 240
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.34 E-value=0.022 Score=58.68 Aligned_cols=92 Identities=20% Similarity=0.116 Sum_probs=55.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC--------CCccc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRD----HFDLKAWTCVSDDFDVVRLIKVILRSFVADPN--------VDNRD 276 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~ 276 (946)
....++.|+|.+|+|||+||.+++....... .=..++|++....++...+ .++.+....... ....+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeCCC
Confidence 3568999999999999999999986321111 0146789998887776554 334443322111 01133
Q ss_pred HHHHHHHHHHHhC----CceEEEEEcCCC
Q 043855 277 LILLQLQLKKQLS----GKKFLFVLDDVW 301 (946)
Q Consensus 277 ~~~~~~~l~~~l~----~kr~LlVlDdv~ 301 (946)
.+++...+.+... .+.-|+|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4444444444432 345589999874
No 241
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.00039 Score=69.40 Aligned_cols=98 Identities=24% Similarity=0.259 Sum_probs=73.9
Q ss_pred cccceeeccCCCCCCCccchhHHhhhhhc-ccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCcccccc--chhcC
Q 043855 562 IVCLRTFLPVNLPNSSRGLLAFRVLHQLL-RLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPE--SVNKL 638 (946)
Q Consensus 562 ~~~LrsL~~~~~~~~~~~~~~~~~~~~l~-~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~--~i~~L 638 (946)
+.+++.|.++++. +.. . +++ +++.|+||.|+-|.|+.+ ..+..|++|+.|.|+.|.|..+-+ .+.+|
T Consensus 18 l~~vkKLNcwg~~------L~D--I-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGCG------LDD--I-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCCC------ccH--H-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence 4456667776654 111 1 233 899999999999999988 458899999999999999987743 57899
Q ss_pred CCCcEEecCCCCchhhchh-----hhcccCccCeee
Q 043855 639 YKLQTLLLEDCDRLKKLCA-----SLGNLINLHHLN 669 (946)
Q Consensus 639 ~~L~~L~L~~~~~l~~lp~-----~i~~L~~L~~L~ 669 (946)
++|++|.|..|.-.+.-+. .+.-|++|+.||
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999999998854444332 366788888886
No 242
>PRK06696 uridine kinase; Validated
Probab=96.31 E-value=0.0048 Score=63.23 Aligned_cols=44 Identities=27% Similarity=0.243 Sum_probs=35.6
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 188 GREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.|.+-+++|.+.+.... .+...+|+|.|.+|+||||||+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35677788888887542 246789999999999999999999973
No 243
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.31 E-value=0.01 Score=61.81 Aligned_cols=57 Identities=25% Similarity=0.208 Sum_probs=41.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRD----HFDLKAWTCVSDDFDVVRLIKVILRSFV 267 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~ 267 (946)
...+.-|+|.+|+|||.|+.+++-...+.. .=..++|++-...|...++. +|++...
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 457999999999999999988875433222 12358999999999887764 5666543
No 244
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.03 Score=60.56 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=47.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCH--HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDV--VRLIKVILRSFVADPNVDNRDLILLQLQLKKQ 287 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 287 (946)
+.++|+|+|++|+||||++..++.... ... ..+..++.. .+.. .+-++...+.++.... ...+...+...+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~G-kkVglI~aD-t~RiaAvEQLk~yae~lgipv~-v~~d~~~L~~aL~~l 315 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKK-KTVGFITTD-HSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYF 315 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcC-CcEEEEecC-CcchHHHHHHHHHhhhcCCcEE-ecCCHHHHHHHHHHH
Confidence 458999999999999999999986322 111 234444443 3332 2222333333322211 123445555555443
Q ss_pred hCC-ceEEEEEcCCCC
Q 043855 288 LSG-KKFLFVLDDVWN 302 (946)
Q Consensus 288 l~~-kr~LlVlDdv~~ 302 (946)
-.. +.=+|++|-...
T Consensus 316 k~~~~~DvVLIDTaGR 331 (436)
T PRK11889 316 KEEARVDYILIDTAGK 331 (436)
T ss_pred HhccCCCEEEEeCccc
Confidence 221 234677887754
No 245
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.29 E-value=0.01 Score=57.44 Aligned_cols=45 Identities=27% Similarity=0.266 Sum_probs=32.8
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 186 VYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+||....+.++++.+..... ...-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 47888888888887765431 2245669999999999999999984
No 246
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.29 E-value=0.0028 Score=68.18 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=53.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGK 291 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 291 (946)
..+.++|..|+|||+||..+++.. ...-..++++++.+ ++..+...-. .. ..+.... + +.+. +
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~~~------l~~~l~~~~~-~~---~~~~~~~---~-~~l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTADE------LIEILREIRF-NN---DKELEEV---Y-DLLI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEHHH------HHHHHHHHHh-cc---chhHHHH---H-HHhc-c
Confidence 668999999999999999999843 22222456665433 3333322111 11 1111111 1 2222 2
Q ss_pred eEEEEEcCCCCCChhhHhh--hhccCCCC-CCCcEEEEEcCC
Q 043855 292 KFLFVLDDVWNESYNDWVE--LSHPFEAG-APGSKIIVTTRN 330 (946)
Q Consensus 292 r~LlVlDdv~~~~~~~w~~--~~~~l~~~-~~gs~iivTtR~ 330 (946)
-=||||||+.......|.. +...+... ..+-.+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2489999996654444432 22222111 124468888874
No 247
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.26 E-value=0.15 Score=55.70 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 043855 191 IEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDD 235 (946)
Q Consensus 191 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (946)
.-.+.|.+.+...+ .....+|+|.|.=|+||||+.+.+....
T Consensus 3 ~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 3 PYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred HHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44566777776543 2467899999999999999999998743
No 248
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.24 E-value=0.015 Score=59.49 Aligned_cols=44 Identities=18% Similarity=0.077 Sum_probs=32.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCC
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFD 254 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 254 (946)
....++.|.|.+|+||||+|.+++.. ....-..++|++....++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 35689999999999999999999873 222233577887765554
No 249
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.23 E-value=0.04 Score=66.66 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=73.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
..++|+...+..+.+.+..-. ....-|.|+|..|+|||++|+.+++.... .. ...+.+++..-. ...+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-~~-~~~v~i~c~~~~--~~~~~~-- 445 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSGR-NN-RRMVKMNCAAMP--AGLLES-- 445 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcCC-CC-CCeEEEecccCC--hhHhhh--
Confidence 368999998888877665432 12357889999999999999999974321 11 234445554422 122111
Q ss_pred HHhcCCCCCCccc-HHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCC-----------CCCcEEEEEcCCh
Q 043855 264 RSFVADPNVDNRD-LILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAG-----------APGSKIIVTTRNQ 331 (946)
Q Consensus 264 ~~l~~~~~~~~~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~-----------~~gs~iivTtR~~ 331 (946)
.+.+........ .......+ -....=.|+||||..........+...+..+ ..+.|||.||...
T Consensus 446 -~lfg~~~~~~~g~~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 446 -DLFGHERGAFTGASAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred -hhcCcccccccccccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 122211100000 00001111 1123356999999877666566665544321 1345888888654
No 250
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.20 E-value=0.0038 Score=58.49 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=59.9
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc-cccCCceEEEEeCCCCCHHHHHHHHHHH
Q 043855 187 YGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRV-RDHFDLKAWTCVSDDFDVVRLIKVILRS 265 (946)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~il~~ 265 (946)
||.-..++++.+.+..-. .....|.|+|..|+||+++|+.++..... ...|..+ .+.. .+ .+++++
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-~~-----~~~l~~ 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-LP-----AELLEQ 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC-TC-----HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh-Cc-----HHHHHH
Confidence 466666777766665432 12356789999999999999999874322 1222110 0111 00 111111
Q ss_pred hcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCC-CCCcEEEEEcCCh
Q 043855 266 FVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAG-APGSKIIVTTRNQ 331 (946)
Q Consensus 266 l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~-~~gs~iivTtR~~ 331 (946)
.+.--|+|+|+..-+......+...+... ....|+|.||+..
T Consensus 68 ------------------------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 ------------------------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ------------------------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ------------------------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 13344778999776655555565555422 4677999999854
No 251
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.19 E-value=0.0059 Score=58.55 Aligned_cols=88 Identities=24% Similarity=0.255 Sum_probs=67.3
Q ss_pred hhhhcccCceeEEEecCCCCccCCccccC-CCCCcEEeccCCCccccc--cchhcCCCCcEEecCCCCchhhchh----h
Q 043855 586 LHQLLRLQRLRVFSLCGYEIFELPDSIGE-LRHLRYLNLSRTLIEVLP--ESVNKLYKLQTLLLEDCDRLKKLCA----S 658 (946)
Q Consensus 586 ~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~-l~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~ 658 (946)
...+.+++.|.+|.|.+|.|+.+-..+.. +++|..|.|.+|+|.++- ..+..|+.|++|.+-+| .+...+. .
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yv 135 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYV 135 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCceeEE
Confidence 34455788999999999999988766655 456999999999988663 34677899999999888 4544432 3
Q ss_pred hcccCccCeeecCCCC
Q 043855 659 LGNLINLHHLNNSNTD 674 (946)
Q Consensus 659 i~~L~~L~~L~l~~~~ 674 (946)
+.++++|+.||+.+-.
T Consensus 136 l~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKVT 151 (233)
T ss_pred EEecCcceEeehhhhh
Confidence 7889999999987643
No 252
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.19 E-value=0.015 Score=69.77 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=68.4
Q ss_pred cccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
..++|-++.++.|.+.+.....+ .......+.++|++|+|||++|+.++.. ... ..+.+++++..+...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~~---~~i~id~se~~~~~~--- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LGI---ELLRFDMSEYMERHT--- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hCC---CcEEeechhhccccc---
Confidence 35889999999998888642110 1223467899999999999999999874 222 234455544322111
Q ss_pred HHHHHhcCCCCC-Cc-ccHHHHHHHHHHHhCC-ceEEEEEcCCCCCChhhHhhhhccCC
Q 043855 261 VILRSFVADPNV-DN-RDLILLQLQLKKQLSG-KKFLFVLDDVWNESYNDWVELSHPFE 316 (946)
Q Consensus 261 ~il~~l~~~~~~-~~-~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~w~~~~~~l~ 316 (946)
...+.+.+.. .. ..... +.+.++. ...+|+||++...+.+.+..+...+.
T Consensus 530 --~~~LiG~~~gyvg~~~~g~----L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 --VSRLIGAPPGYVGFDQGGL----LTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred --HHHHcCCCCCcccccccch----HHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1222222211 11 11112 2223333 34699999998777666666655443
No 253
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.18 E-value=0.027 Score=64.05 Aligned_cols=159 Identities=13% Similarity=0.041 Sum_probs=80.8
Q ss_pred cccccchhHHHHHHHHHhc--C--CCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLR--D--DLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLI 259 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~--~--~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 259 (946)
.++.|.+..++.+...... . ...+-...+-|.++|++|.|||.+|+.+++.. ...| +-+..+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~~-------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVGK-------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhHH--------
Confidence 4577877666655542211 0 00011345678899999999999999999842 2222 1122211
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh-------hhH-h----hhhccCCCCCCCcEEEEE
Q 043855 260 KVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY-------NDW-V----ELSHPFEAGAPGSKIIVT 327 (946)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~~w-~----~~~~~l~~~~~gs~iivT 327 (946)
+..... ..+...+...+...-...+++|+||+++..-. ..+ . .+...+.....+.-||.|
T Consensus 295 --l~~~~v------Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 --LFGGIV------GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred --hccccc------ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 111111 11112222333333335789999999853100 000 1 111112222334446667
Q ss_pred cCChhH-HHhh----CCCCcEeCCCCChHHHHHHHHHhhcC
Q 043855 328 TRNQGV-AAIM----GTVPAYQLKKLSDHDCLALFARHSLG 363 (946)
Q Consensus 328 tR~~~v-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~ 363 (946)
|...+. ...+ .-...+.++.-+.++-.++|..+...
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 765432 1111 12346778888888888888877543
No 254
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.17 E-value=0.077 Score=64.78 Aligned_cols=179 Identities=15% Similarity=0.140 Sum_probs=93.1
Q ss_pred cccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDL-------MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
.++.|.+..++.|.+.+.-.-. .+-...+-+.++|++|.|||++|+++++. ....| +.+..+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f---i~v~~~------ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF---IAVRGP------ 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEehH------
Confidence 4578888888877776532100 01123455788999999999999999984 33332 222211
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCC------h-hh-----HhhhhccCCC--CCCCc
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNES------Y-ND-----WVELSHPFEA--GAPGS 322 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------~-~~-----w~~~~~~l~~--~~~gs 322 (946)
+++....+ .....+...+...-...+.+|+||++.... . .. ...+...+.. ...+.
T Consensus 522 ----~l~~~~vG------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 ----EILSKWVG------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ----HHhhcccC------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11121111 112223333333345668999999984310 0 00 1112222221 12344
Q ss_pred EEEEEcCChhHHHh--h---CCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 043855 323 KIIVTTRNQGVAAI--M---GTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLP 388 (946)
Q Consensus 323 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlP 388 (946)
.||.||...+.... . .-...+.+...+.++-.++|..+.-+.. .....+ ...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHcCCCC
Confidence 56667766543321 1 1234677888888888888876543211 111122 345667777653
No 255
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.16 E-value=0.0097 Score=63.43 Aligned_cols=86 Identities=20% Similarity=0.098 Sum_probs=54.6
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC----CCcccHHHHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPN----VDNRDLILLQLQL 284 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l 284 (946)
...+++-|+|++|+||||||.+++.. ....-..++||+..+.++... +++++.... ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~~-----a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPVY-----AKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHHH-----HHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45689999999999999999998863 223345688999888776532 333332111 0222344444455
Q ss_pred HHHhC-CceEEEEEcCCC
Q 043855 285 KKQLS-GKKFLFVLDDVW 301 (946)
Q Consensus 285 ~~~l~-~kr~LlVlDdv~ 301 (946)
...++ +.--+||+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 44443 456689999973
No 256
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.097 Score=58.70 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=62.3
Q ss_pred cccccchhHHHHHHHHHhcCCCC------CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLM------NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.++=|.+....++.+++.....+ +-...+=|.++|++|.|||.||+++++...+ .| +.++-
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--Pf-----~~isA------ 256 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--PF-----LSISA------ 256 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--ce-----Eeecc------
Confidence 45678888888888777542211 1134567789999999999999999985332 22 33332
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCC
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWN 302 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 302 (946)
.+|+..+.+ .+.+.+...+.+.-..-++++++|+++-
T Consensus 257 --peivSGvSG------ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 257 --PEIVSGVSG------ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred --hhhhcccCc------ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 123333322 2334444455555566799999999964
No 257
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.13 E-value=0.018 Score=59.62 Aligned_cols=89 Identities=18% Similarity=0.245 Sum_probs=52.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccC-CceEEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCCcccHH--
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF-DLKAWTCVSDDF-DVVRLIKVILRSFVADP-------NVDNRDLI-- 278 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~-~~~~~~~~il~~l~~~~-------~~~~~~~~-- 278 (946)
+-.-++|+|.+|+|||||++.+++. ++.+| +..+++-+.+.. .+.++..++...=..+. ..+.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3467899999999999999999984 44444 345666666654 34555555543211110 00111111
Q ss_pred --HHHHHHHHHh---CCceEEEEEcCC
Q 043855 279 --LLQLQLKKQL---SGKKFLFVLDDV 300 (946)
Q Consensus 279 --~~~~~l~~~l---~~kr~LlVlDdv 300 (946)
...-.+.+++ +++..|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122344555 388999999998
No 258
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.10 E-value=0.026 Score=68.83 Aligned_cols=180 Identities=13% Similarity=0.092 Sum_probs=92.0
Q ss_pred cccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDL-------MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
.++.|.+..+++|.+++...-. .+-...+.+.++|++|+|||+||+.+++. ....| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH------
Confidence 4588999999998887642100 01123466889999999999999999983 32222 222211
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh-----------hhHhhhhccCCCC-CCCcEE
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY-----------NDWVELSHPFEAG-APGSKI 324 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~w~~~~~~l~~~-~~gs~i 324 (946)
++ .... .......+...+.......+.+|+||++..... .....+...+... ..+..+
T Consensus 247 ~i----~~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 EI----MSKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred HH----hccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11 1110 111122233344444456678999999843210 0111222222111 123334
Q ss_pred EE-EcCChh-HHHhhC----CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChh
Q 043855 325 IV-TTRNQG-VAAIMG----TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPL 389 (946)
Q Consensus 325 iv-TtR~~~-v~~~~~----~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPL 389 (946)
+| ||.... +...+. -...+.+...+.++-.+++....-+. ..... .....+++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCccc----cCHHHHHHhCCCCCH
Confidence 44 554432 211111 12357777778888888887543211 11111 124567778887643
No 259
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.012 Score=58.08 Aligned_cols=79 Identities=22% Similarity=0.162 Sum_probs=45.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCC-CCCCcccHHHHHHHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVAD-PNVDNRDLILLQLQLKKQ 287 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~-~~~~~~~~~~~~~~l~~~ 287 (946)
.++.+|+|.|.+|+||||+|+.++. ..+... ++-++-..-+...+ .....+..... ....+.+.+.+...|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~YYk~~~-~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDDYYKDQS-HLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeeccccccchh-hcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 3568999999999999999999998 444331 12222211111100 01111111111 112566778888888888
Q ss_pred hCCce
Q 043855 288 LSGKK 292 (946)
Q Consensus 288 l~~kr 292 (946)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 260
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.99 E-value=0.02 Score=56.95 Aligned_cols=89 Identities=18% Similarity=0.098 Sum_probs=48.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCC--CCcccH-HHHHHHHHH
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD-FDVVRLIKVILRSFVADPN--VDNRDL-ILLQLQLKK 286 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~--~~~~~~-~~~~~~l~~ 286 (946)
++|+.++|+.|+||||.+.+++.....+ =..+..++.... ....+-++...+.++.+.. ....+. +.+...+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4799999999999999888888744333 334566665422 2344555666666654321 011222 223333333
Q ss_pred HhCCceEEEEEcCCC
Q 043855 287 QLSGKKFLFVLDDVW 301 (946)
Q Consensus 287 ~l~~kr~LlVlDdv~ 301 (946)
.-..+.=+|++|-..
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322233467777664
No 261
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.95 E-value=0.021 Score=61.89 Aligned_cols=58 Identities=14% Similarity=0.131 Sum_probs=42.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccccccc----CCceEEEEeCCCCCHHHHHHHHHHHhc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDH----FDLKAWTCVSDDFDVVRLIKVILRSFV 267 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~il~~l~ 267 (946)
....++-|+|++|+|||+++.+++........ =..++||+....|++.++. ++++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 35689999999999999999999864322111 1378999999988887754 4445543
No 262
>PRK13695 putative NTPase; Provisional
Probab=95.94 E-value=0.0083 Score=58.83 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 263
>PRK09354 recA recombinase A; Provisional
Probab=95.93 E-value=0.018 Score=61.97 Aligned_cols=86 Identities=20% Similarity=0.101 Sum_probs=55.6
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CcccHHHHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV----DNRDLILLQLQL 284 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 284 (946)
...+++-|+|++|+||||||.+++... ...-...+||+....++.. .+++++.+... .....++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456899999999999999999988643 2334568899998887753 23344322110 122344444445
Q ss_pred HHHhC-CceEEEEEcCCC
Q 043855 285 KKQLS-GKKFLFVLDDVW 301 (946)
Q Consensus 285 ~~~l~-~kr~LlVlDdv~ 301 (946)
...++ ++.-+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 44443 456689999984
No 264
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.92 E-value=0.1 Score=60.60 Aligned_cols=135 Identities=11% Similarity=0.070 Sum_probs=75.0
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHH
Q 043855 183 EAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVI 262 (946)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 262 (946)
...++|+...+.++.+.+..-. ....-|.|+|..|+|||++|+.+++.... .-...+.|++..-.+ ..+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~~--~~~e-- 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALPE--SLAE-- 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCCh--HHHH--
Confidence 3568999999999888886643 23457789999999999999999974221 112345566554322 2211
Q ss_pred HHHhcCCCCCCcc-cHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCC-----------CCcEEEEEcCC
Q 043855 263 LRSFVADPNVDNR-DLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGA-----------PGSKIIVTTRN 330 (946)
Q Consensus 263 l~~l~~~~~~~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~-----------~gs~iivTtR~ 330 (946)
..+.+....... ........+. ....=.|+||+|..........+...+..+. ...|||.||..
T Consensus 256 -~~lfG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 256 -SELFGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred -HHhcCccccccCCCcccCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 122221110000 0000000111 1122346899998877666666655543321 24588888865
Q ss_pred h
Q 043855 331 Q 331 (946)
Q Consensus 331 ~ 331 (946)
.
T Consensus 332 ~ 332 (509)
T PRK05022 332 D 332 (509)
T ss_pred C
Confidence 3
No 265
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.92 E-value=0.025 Score=59.35 Aligned_cols=133 Identities=20% Similarity=0.291 Sum_probs=73.5
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc-cccccCCceE----EEEeCCCCC------
Q 043855 186 VYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDD-RVRDHFDLKA----WTCVSDDFD------ 254 (946)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~F~~~~----wv~~~~~~~------ 254 (946)
+-+|..+..--.++|+++ ....|.+.|.+|.|||.||-+..-.. ..++.|..++ -|.++++..
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 334666767777888765 57899999999999999986654321 2233343222 223333321
Q ss_pred ---HHHHHHHHH---HHhcCCCCCCcccHHHHHHHH---------HHHhCCc---eEEEEEcCCCCCChhhHhhhhccCC
Q 043855 255 ---VVRLIKVIL---RSFVADPNVDNRDLILLQLQL---------KKQLSGK---KFLFVLDDVWNESYNDWVELSHPFE 316 (946)
Q Consensus 255 ---~~~~~~~il---~~l~~~~~~~~~~~~~~~~~l---------~~~l~~k---r~LlVlDdv~~~~~~~w~~~~~~l~ 316 (946)
+.-+++.|. +.+....... ...+...+ -.+.+|+ +-++|+|...+-+..+...+ +.
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~~~---~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---lt 373 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNEPG---DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LT 373 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccccc---hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HH
Confidence 122233332 2232222111 12222221 1334554 46899999988765444444 44
Q ss_pred CCCCCcEEEEEcCC
Q 043855 317 AGAPGSKIIVTTRN 330 (946)
Q Consensus 317 ~~~~gs~iivTtR~ 330 (946)
..+.||||+.|---
T Consensus 374 R~G~GsKIVl~gd~ 387 (436)
T COG1875 374 RAGEGSKIVLTGDP 387 (436)
T ss_pred hccCCCEEEEcCCH
Confidence 45789999998753
No 266
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.91 E-value=0.021 Score=65.12 Aligned_cols=75 Identities=21% Similarity=0.252 Sum_probs=52.9
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQL 288 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 288 (946)
..-+++.++|++|+||||||+-|+.... | .++=|.+|+.-....+-..|...+..... +
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~----------------l 382 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSV----------------L 382 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccc----------------c
Confidence 4568999999999999999999997422 2 35667778776666665555555433322 2
Q ss_pred --CCceEEEEEcCCCCCC
Q 043855 289 --SGKKFLFVLDDVWNES 304 (946)
Q Consensus 289 --~~kr~LlVlDdv~~~~ 304 (946)
.+++.-||+|.++...
T Consensus 383 ~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ccCCCcceEEEecccCCc
Confidence 2577889999997654
No 267
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.91 E-value=0.017 Score=61.54 Aligned_cols=86 Identities=20% Similarity=0.112 Sum_probs=54.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CcccHHHHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV----DNRDLILLQLQL 284 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 284 (946)
...+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .+++++..... .....++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999998764 22333567899887766653 23334322110 222344444445
Q ss_pred HHHhC-CceEEEEEcCCC
Q 043855 285 KKQLS-GKKFLFVLDDVW 301 (946)
Q Consensus 285 ~~~l~-~kr~LlVlDdv~ 301 (946)
....+ +..-+||+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 44443 456799999984
No 268
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.91 E-value=0.15 Score=51.57 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=104.0
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc----cccccCCceEEEEeCCC---------
Q 043855 186 VYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDD----RVRDHFDLKAWTCVSDD--------- 252 (946)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----~~~~~F~~~~wv~~~~~--------- 252 (946)
+.++++....+..... .++...+.++|++|.||-|.+..+.+.- --+-.-+.+.|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5566666666666553 2457888999999999999776665531 11112344556555443
Q ss_pred -C-----------CHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceE-EEEEcCCCCCChhhHhhhhccCCCCC
Q 043855 253 -F-----------DVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKF-LFVLDDVWNESYNDWVELSHPFEAGA 319 (946)
Q Consensus 253 -~-----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~w~~~~~~l~~~~ 319 (946)
+ .-+.+.+++++++....+. +.-..+.| ++|+-.+++-+.++-..++.....=.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qi-------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQI-------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcch-------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 1233344444443322210 00112344 56666665555555555555544444
Q ss_pred CCcEEEEEcCCh--hHHHhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHH
Q 043855 320 PGSKIIVTTRNQ--GVAAIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAA 391 (946)
Q Consensus 320 ~gs~iivTtR~~--~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 391 (946)
+.+|+|+...+. -+...-...-.+++...+++|....+++.+-..+- .. | ++++.+|+++++|.---+
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~l-p--~~~l~rIa~kS~~nLRrA 225 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QL-P--KELLKRIAEKSNRNLRRA 225 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cC-c--HHHHHHHHHHhcccHHHH
Confidence 667877744332 12222223456889999999999998887643221 12 2 578999999999875433
No 269
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.89 E-value=0.0035 Score=37.33 Aligned_cols=18 Identities=39% Similarity=0.661 Sum_probs=8.4
Q ss_pred CcEEeccCCCccccccch
Q 043855 618 LRYLNLSRTLIEVLPESV 635 (946)
Q Consensus 618 Lr~L~Ls~~~i~~lp~~i 635 (946)
|++|+|++|.++.+|.+|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 270
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.88 E-value=0.03 Score=54.05 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=29.4
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCC
Q 043855 213 VLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFD 254 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 254 (946)
++.|+|.+|+||||+++.+... ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4689999999999999999873 222334677777766543
No 271
>PRK08233 hypothetical protein; Provisional
Probab=95.88 E-value=0.025 Score=55.85 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+|+|.|.+|+||||||+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999974
No 272
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.04 Score=57.40 Aligned_cols=90 Identities=20% Similarity=0.137 Sum_probs=60.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHH-h---cCCCCCCcccHHHHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRS-F---VADPNVDNRDLILLQLQL 284 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~-l---~~~~~~~~~~~~~~~~~l 284 (946)
+..+++=|+|+.|.||||+|.+++-. .+..-...+|++.-..+++..+ +++... + .............+...+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~-~~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERA-KQLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHH-HHHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 56789999999999999999998874 3333447899999999998775 344444 2 111111223333444445
Q ss_pred HHHhCCceEEEEEcCCC
Q 043855 285 KKQLSGKKFLFVLDDVW 301 (946)
Q Consensus 285 ~~~l~~kr~LlVlDdv~ 301 (946)
......+--|+|+|.+-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 55444456799999883
No 273
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.88 E-value=0.025 Score=62.06 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...++.|+|++|+||||++..++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999863
No 274
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.87 E-value=0.02 Score=59.48 Aligned_cols=82 Identities=24% Similarity=0.293 Sum_probs=48.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhC
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLS 289 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 289 (946)
+..-+.++|.+|+|||.||.++.+..- +..+ .+.++++ .+++.++...... .. ....+.+.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~------~el~~~Lk~~~~~-----~~----~~~~l~~~l- 165 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA------PDLLSKLKAAFDE-----GR----LEEKLLREL- 165 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH------HHHHHHHHHHHhc-----Cc----hHHHHHHHh-
Confidence 345688999999999999999999533 2223 3455544 3455555444432 11 111222212
Q ss_pred CceEEEEEcCCCCCChhhHh
Q 043855 290 GKKFLFVLDDVWNESYNDWV 309 (946)
Q Consensus 290 ~kr~LlVlDdv~~~~~~~w~ 309 (946)
.+-=||||||+.......|.
T Consensus 166 ~~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 166 KKVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred hcCCEEEEecccCccCCHHH
Confidence 12348999999776555554
No 275
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.84 E-value=0.027 Score=59.69 Aligned_cols=87 Identities=21% Similarity=0.146 Sum_probs=46.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccccc-ccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVR-DHFDLKAWTCVSDDF-DVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQ 287 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 287 (946)
..+++.|+|++|+||||++..++.....+ +.+ .+..|+..... ...+.+....+.++.... ...+...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHHc
Confidence 46799999999999999999988743222 222 34555544321 122222232333332221 223344454444433
Q ss_pred hCCceEEEEEcCC
Q 043855 288 LSGKKFLFVLDDV 300 (946)
Q Consensus 288 l~~kr~LlVlDdv 300 (946)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 33 346777754
No 276
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.81 E-value=0.018 Score=57.58 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=54.7
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH-h--
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQ-L-- 288 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l-- 288 (946)
+++.|.|++|.||||+++.+.......+ ..+.+...... ....+.+..+. ....+.......... .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~----Aa~~L~~~~~~----~a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTNK----AAKELREKTGI----EAQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSHH----HHHHHHHHHTS-----EEEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcHH----HHHHHHHhhCc----chhhHHHHHhcCCcccccc
Confidence 6888999999999999999886433222 23333333322 22222233221 111111110000000 0
Q ss_pred ---CCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChh
Q 043855 289 ---SGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQG 332 (946)
Q Consensus 289 ---~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~ 332 (946)
..++-+||+|+++..+...+..+...... .|+|+|+.--...
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 12345999999987776677777666554 5778887665443
No 277
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.81 E-value=0.02 Score=61.41 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=43.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccccc----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCC
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVR----DHFDLKAWTCVSDDFDVVRLIKVILRSFVAD 269 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~ 269 (946)
...+++-|+|++|+|||+|+.+++-..... ..=..++||+....|+++++. +++++++..
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 356899999999999999999877432221 111368999999999888864 456666543
No 278
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.75 E-value=0.055 Score=52.75 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=60.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccc-cc--ccc---CC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCC-C----Cccc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDD-RV--RDH---FD--LKAWTCVSDDFDVVRLIKVILRSFVADPN-V----DNRD 276 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~-~~--~~~---F~--~~~wv~~~~~~~~~~~~~~il~~l~~~~~-~----~~~~ 276 (946)
.-.+++|+|+.|.|||||.+.+..+. .+ ... |. .+.|+ .+ .+.+..+..... . ...+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 34689999999999999999986421 11 111 11 12232 22 345565554321 0 1112
Q ss_pred HHH-HHHHHHHHhCCc--eEEEEEcCCCCC-ChhhHhhhhccCCCC-CCCcEEEEEcCChhHHH
Q 043855 277 LIL-LQLQLKKQLSGK--KFLFVLDDVWNE-SYNDWVELSHPFEAG-APGSKIIVTTRNQGVAA 335 (946)
Q Consensus 277 ~~~-~~~~l~~~l~~k--r~LlVlDdv~~~-~~~~w~~~~~~l~~~-~~gs~iivTtR~~~v~~ 335 (946)
..+ ..-.+...+-.+ +-++++|+.-.. +......+...+... ..|..||++|.+.+...
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 222 222344555556 678888987432 222233333332211 14667888888876654
No 279
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.74 E-value=0.0044 Score=62.06 Aligned_cols=82 Identities=26% Similarity=0.242 Sum_probs=54.5
Q ss_pred cCCCCCcEEeccCCCccccccchhcCCCCcEEecCCC--CchhhchhhhcccCccCeeecCCCCCccccccc---cCCCC
Q 043855 613 GELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDC--DRLKKLCASLGNLINLHHLNNSNTDSLEEMPIG---IGKLT 687 (946)
Q Consensus 613 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~---i~~l~ 687 (946)
-.+..|++|++.+..++.+ ..+-.|++|++|.++.| .....++....++++|++|++++|+ +.. +.. +..+.
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhc
Confidence 3445666666666555443 23447899999999998 5556677667788999999999997 543 233 34445
Q ss_pred CCcccCceec
Q 043855 688 SLQTLCSFVV 697 (946)
Q Consensus 688 ~L~~L~~~~~ 697 (946)
+|..|.++.+
T Consensus 117 nL~~Ldl~n~ 126 (260)
T KOG2739|consen 117 NLKSLDLFNC 126 (260)
T ss_pred chhhhhcccC
Confidence 5555555444
No 280
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.028 Score=66.10 Aligned_cols=154 Identities=15% Similarity=0.173 Sum_probs=82.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCC-----ceEEEEeCCCCCHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFD-----LKAWTCVSDDFDVVRL 258 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-----~~~wv~~~~~~~~~~~ 258 (946)
..++||++|++++++.|.... .+-+ .++|.+|+|||++|.-++..- +.+... ..++. .|+.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~----KNNP--vLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s-----LD~g-- 235 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRT----KNNP--VLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS-----LDLG-- 235 (786)
T ss_pred CCCcChHHHHHHHHHHHhccC----CCCC--eEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE-----ecHH--
Confidence 348999999999999997653 1222 368999999999888887621 111111 11110 0111
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHh-CCceEEEEEcCCCCCC---------hhhHhhhhccCCCCCCCcEEEEEc
Q 043855 259 IKVILRSFVADPNVDNRDLILLQLQLKKQL-SGKKFLFVLDDVWNES---------YNDWVELSHPFEAGAPGSKIIVTT 328 (946)
Q Consensus 259 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~w~~~~~~l~~~~~gs~iivTt 328 (946)
.-+.+.. -..+.++....+.+.+ +.++..|++|.+...- .+.-.-+..+|.. +. -++|-.|
T Consensus 236 -----~LvAGak--yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-Ge-L~~IGAT 306 (786)
T COG0542 236 -----SLVAGAK--YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GE-LRCIGAT 306 (786)
T ss_pred -----HHhcccc--ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CC-eEEEEec
Confidence 1111111 2233444444333333 3458999999985420 1111112222222 11 2444443
Q ss_pred CChhHHHh-------hCCCCcEeCCCCChHHHHHHHHHh
Q 043855 329 RNQGVAAI-------MGTVPAYQLKKLSDHDCLALFARH 360 (946)
Q Consensus 329 R~~~v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~ 360 (946)
...+--+. ....+.+.+..-+.+++..+++-.
T Consensus 307 T~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 307 TLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred cHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 33222211 124567889999999999888754
No 281
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.71 E-value=0.044 Score=58.94 Aligned_cols=59 Identities=19% Similarity=0.071 Sum_probs=41.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRD----HFDLKAWTCVSDDFDVVRLIKVILRSFVA 268 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 268 (946)
....++.|+|.+|+|||||+..++....... .-..++|++....++..++ .++++.++.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 3568999999999999999999875322211 1135799999888888763 445555443
No 282
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.68 E-value=0.037 Score=56.42 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=71.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCC-----CCCHHHHHHHHHHHhcCCCCC-----CcccHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSD-----DFDVVRLIKVILRSFVADPNV-----DNRDLIL 279 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~il~~l~~~~~~-----~~~~~~~ 279 (946)
+..+++|||.+|.||||+++.+.. ...--...+++...+ .....+...++++.++..... ..-+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 447999999999999999999996 222223334333221 222344556677766643321 1222333
Q ss_pred HHH-HHHHHhCCceEEEEEcCCCCC-ChhhHhhh---hccCCCCCCCcEEEEEcCChhHHHhhC
Q 043855 280 LQL-QLKKQLSGKKFLFVLDDVWNE-SYNDWVEL---SHPFEAGAPGSKIIVTTRNQGVAAIMG 338 (946)
Q Consensus 280 ~~~-~l~~~l~~kr~LlVlDdv~~~-~~~~w~~~---~~~l~~~~~gs~iivTtR~~~v~~~~~ 338 (946)
.+. .+.+.|.-++-++|.|..-+. +...-.++ ...+.. ..|-..+..|-+-.|+..+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhc
Confidence 333 366778889999999986332 11111122 222221 24556777777777777654
No 283
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.67 E-value=0.027 Score=60.82 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=43.9
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccccc----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCC
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVR----DHFDLKAWTCVSDDFDVVRLIKVILRSFVAD 269 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~ 269 (946)
...+++-|+|.+|+|||+|+.+++-..... ..-..++||+....|++.++. ++++.++.+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 356899999999999999999987432221 112468999999999988864 466666543
No 284
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.66 E-value=0.042 Score=64.48 Aligned_cols=135 Identities=13% Similarity=0.092 Sum_probs=73.7
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc-ccccCCceEEEEeCCCCCHHHHHHH
Q 043855 183 EAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDR-VRDHFDLKAWTCVSDDFDVVRLIKV 261 (946)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~ 261 (946)
...++|....+.++.+.+..-. .....|.|+|..|+|||++|+.+++.-. ... ..+.|++..-.+ ..+.
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~---pfv~i~c~~~~~--~~~~- 264 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLSPRAKR---PFVKVNCAALSE--TLLE- 264 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhCCCCCC---CeEEeecCCCCH--HHHH-
Confidence 4579999999999888776542 1234567999999999999999997422 122 234455544321 2222
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCC-----------CCcEEEEEcCC
Q 043855 262 ILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGA-----------PGSKIIVTTRN 330 (946)
Q Consensus 262 il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~-----------~gs~iivTtR~ 330 (946)
..+.+........... ......-....-.|+||+|.......+..+...+..+. ...|||.||..
T Consensus 265 --~~lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 265 --SELFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred --HHHcCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 1222211100000000 00000011234468899998777666666655553321 12578887754
Q ss_pred h
Q 043855 331 Q 331 (946)
Q Consensus 331 ~ 331 (946)
.
T Consensus 341 ~ 341 (534)
T TIGR01817 341 D 341 (534)
T ss_pred C
Confidence 3
No 285
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.65 E-value=0.097 Score=51.57 Aligned_cols=122 Identities=14% Similarity=0.105 Sum_probs=63.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeC--CCCCHHHHHH------HHHHHhcCCCC----CCcccH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVS--DDFDVVRLIK------VILRSFVADPN----VDNRDL 277 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~--~~~~~~~~~~------~il~~l~~~~~----~~~~~~ 277 (946)
.-.+++|+|..|.|||||++.++.-. ......+++.-. ...+...... ++++.++.... ....+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 34689999999999999999999732 223333433211 1112222211 13444432211 011222
Q ss_pred H-HHHHHHHHHhCCceEEEEEcCCCCC-ChhhHhhhhccCCCC-CC-CcEEEEEcCChhHH
Q 043855 278 I-LLQLQLKKQLSGKKFLFVLDDVWNE-SYNDWVELSHPFEAG-AP-GSKIIVTTRNQGVA 334 (946)
Q Consensus 278 ~-~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~w~~~~~~l~~~-~~-gs~iivTtR~~~v~ 334 (946)
. ...-.+.+.+-..+-++++|+.-.. +......+...+... .. |..||++|.+.+..
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2 2223355666678889999997432 222333333333221 12 56788888776554
No 286
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.57 E-value=0.76 Score=48.91 Aligned_cols=157 Identities=10% Similarity=0.059 Sum_probs=90.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc---c-----ccccCCceEEEEe-CCCCCHHHHHHHHHHHhcCCCCCCcccHHHHH
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDD---R-----VRDHFDLKAWTCV-SDDFDVVRLIKVILRSFVADPNVDNRDLILLQ 281 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~---~-----~~~~F~~~~wv~~-~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~ 281 (946)
.++..++|..|.||+++|..+.+.- . ...|=+...++.. +....++++ +++.+.+...+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCC-----------
Confidence 4677799999999999999987631 0 0111112233321 111222222 12222222111
Q ss_pred HHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcC-ChhHHH-hhCCCCcEeCCCCChHHHHHHHHH
Q 043855 282 LQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTR-NQGVAA-IMGTVPAYQLKKLSDHDCLALFAR 359 (946)
Q Consensus 282 ~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR-~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~ 359 (946)
.-.+++=++|+|++...+......+...+......+.+|++|. ...+.. .......+++.++++++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 0125777889999977766667777777776666777666554 344443 234567899999999999887765
Q ss_pred hhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHH
Q 043855 360 HSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTL 394 (946)
Q Consensus 360 ~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 394 (946)
.. .+ ++.+..++.-.+|.--|+..+
T Consensus 161 ~~-------~~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 161 KN-------KE---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred cC-------CC---hhHHHHHHHHcCCHHHHHHHH
Confidence 31 11 133555666666633455443
No 287
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.54 E-value=0.092 Score=49.48 Aligned_cols=105 Identities=17% Similarity=0.095 Sum_probs=55.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSG 290 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 290 (946)
..+++|+|..|.|||||++.+..-.. .....+|+.-.. .+.--. .-..-+...-.+...+-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~--~lS~G~~~rv~laral~~ 87 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE--QLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc--cCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999987432 123333332100 000000 001111122234455566
Q ss_pred ceEEEEEcCCCC-CChhhHhhhhccCCCCCCCcEEEEEcCChhHHH
Q 043855 291 KKFLFVLDDVWN-ESYNDWVELSHPFEAGAPGSKIIVTTRNQGVAA 335 (946)
Q Consensus 291 kr~LlVlDdv~~-~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~~ 335 (946)
++-++++|+.-. .+......+...+... +..||++|.+.+.+.
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 777889998743 2223333333333322 236777777765543
No 288
>PRK00625 shikimate kinase; Provisional
Probab=95.53 E-value=0.11 Score=50.61 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.|.|+||+|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999873
No 289
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.51 E-value=0.027 Score=61.26 Aligned_cols=133 Identities=13% Similarity=-0.010 Sum_probs=71.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHH
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILR 264 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 264 (946)
.++|+...+.++.+.+..-. ....-|.|+|..|+||+++|+.++..... .-...+.|++.... ...+-..++
T Consensus 7 ~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~-~~~~~~~lf- 78 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN-ENLLDSELF- 78 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCC-HHHHHHHHc-
Confidence 48899999988888776543 12356789999999999999999863211 11233445555432 222222221
Q ss_pred HhcCCCCCCc-ccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCC-----------CCcEEEEEcCCh
Q 043855 265 SFVADPNVDN-RDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGA-----------PGSKIIVTTRNQ 331 (946)
Q Consensus 265 ~l~~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~-----------~gs~iivTtR~~ 331 (946)
+...... .........+. ....=.|+||||.......+..+...+..+. ...|||.||...
T Consensus 79 ---g~~~~~~~g~~~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 79 ---GHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred ---cccccccCCcccccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 1111000 00000001111 1222357899998776666666655443221 135788877653
No 290
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.50 E-value=0.051 Score=58.89 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=41.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRD----HFDLKAWTCVSDDFDVVRLIKVILRSFV 267 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~ 267 (946)
..+++-|+|.+|+||||++.+++....... .=..++||+....|+..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 468999999999999999999986432211 11268999999988887654 4555443
No 291
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.49 E-value=0.043 Score=53.96 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+++|+|+.|.|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999974
No 292
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.48 E-value=0.044 Score=59.51 Aligned_cols=45 Identities=22% Similarity=0.144 Sum_probs=33.9
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 186 VYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 186 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
++|+...+.++.+.+..-. ....-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHh
Confidence 4677777777777665543 12355789999999999999999863
No 293
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.47 E-value=0.039 Score=60.19 Aligned_cols=91 Identities=19% Similarity=0.137 Sum_probs=48.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD-FDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQL 288 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 288 (946)
...++.++|+.|+||||++.++......+.....+..++.... ....+-++...+.++.... ...+..++...+. .+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-~~~~~~~l~~~l~-~l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-AVKDGGDLQLALA-EL 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-ecCCcccHHHHHH-Hh
Confidence 3479999999999999999999874321211234455553321 2233444444444443322 2222223333333 33
Q ss_pred CCceEEEEEcCCCCC
Q 043855 289 SGKKFLFVLDDVWNE 303 (946)
Q Consensus 289 ~~kr~LlVlDdv~~~ 303 (946)
.++ =++++|.....
T Consensus 214 ~~~-DlVLIDTaG~~ 227 (374)
T PRK14722 214 RNK-HMVLIDTIGMS 227 (374)
T ss_pred cCC-CEEEEcCCCCC
Confidence 444 45669988543
No 294
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.012 Score=54.31 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.--|.|.|++|+||||+++.+.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 356899999999999999999973
No 295
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.027 Score=64.00 Aligned_cols=73 Identities=21% Similarity=0.192 Sum_probs=49.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF--DVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQ 287 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 287 (946)
...-|.|.|+.|+|||+||+++++... +.+...+..|+++.-- .++.+++. +...+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~------------------l~~vfse~ 490 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF------------------LNNVFSEA 490 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH------------------HHHHHHHH
Confidence 346788999999999999999998544 5555566777776531 12222221 12234455
Q ss_pred hCCceEEEEEcCCC
Q 043855 288 LSGKKFLFVLDDVW 301 (946)
Q Consensus 288 l~~kr~LlVlDdv~ 301 (946)
+...+-+|||||++
T Consensus 491 ~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLD 504 (952)
T ss_pred HhhCCcEEEEcchh
Confidence 67789999999984
No 296
>PTZ00301 uridine kinase; Provisional
Probab=95.44 E-value=0.023 Score=57.04 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=21.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 297
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.086 Score=63.15 Aligned_cols=112 Identities=14% Similarity=0.156 Sum_probs=71.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCC--CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDG--GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKV 261 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 261 (946)
..++|-++.+..|.+.+.....+... ....+.+.|+.|+|||-||++++. -+-+..+..+-++.++-..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~~e------- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEFQE------- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhhhh-------
Confidence 35788888888888888765432222 567888999999999999999997 4545555666666655221
Q ss_pred HHHHhcCCCC-C-CcccHHHHHHHHHHHhCCceE-EEEEcCCCCCChhhHh
Q 043855 262 ILRSFVADPN-V-DNRDLILLQLQLKKQLSGKKF-LFVLDDVWNESYNDWV 309 (946)
Q Consensus 262 il~~l~~~~~-~-~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~w~ 309 (946)
..++.+.++ - ..... ..|.+.++.++| +|+||||...+.+...
T Consensus 633 -vskligsp~gyvG~e~g----g~LteavrrrP~sVVLfdeIEkAh~~v~n 678 (898)
T KOG1051|consen 633 -VSKLIGSPPGYVGKEEG----GQLTEAVKRRPYSVVLFEEIEKAHPDVLN 678 (898)
T ss_pred -hhhccCCCcccccchhH----HHHHHHHhcCCceEEEEechhhcCHHHHH
Confidence 233333222 1 22222 256666777776 6668999776654444
No 298
>PRK07667 uridine kinase; Provisional
Probab=95.43 E-value=0.02 Score=57.17 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 193 KKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+.|.+.+.... ++..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665443 45589999999999999999999873
No 299
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.42 E-value=0.013 Score=58.65 Aligned_cols=112 Identities=14% Similarity=0.195 Sum_probs=57.5
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGK 291 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 291 (946)
.++.|+|+.|.||||+++.+... ........+++ +.++... .... ...+..+.. ...+.......++..++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~--~~~~-~~~~i~q~~-vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEF--VHES-KRSLINQRE-VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccc--cccC-ccceeeecc-cCCCccCHHHHHHHHhcCC
Confidence 47899999999999999987763 22222334433 2222111 0000 000000000 0111223455677777777
Q ss_pred eEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhHHH
Q 043855 292 KFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGVAA 335 (946)
Q Consensus 292 r~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~~ 335 (946)
+=.+++|++-+. +.+...... ...|-.|+.|+-..++..
T Consensus 75 pd~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHHH
Confidence 779999999543 233332222 124555777776554443
No 300
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.40 E-value=0.03 Score=54.09 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=44.2
Q ss_pred EEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC--CcccHHHHHHHHHHHhCCc
Q 043855 214 LPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV--DNRDLILLQLQLKKQLSGK 291 (946)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~l~~~l~~k 291 (946)
+.|.|.+|+|||++|.++... ....++++.-.+.++.+ +...|.......+.. .......+...+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 678999999999999999863 22356677767766553 344433322212110 112222333333222 2 2
Q ss_pred eEEEEEcCC
Q 043855 292 KFLFVLDDV 300 (946)
Q Consensus 292 r~LlVlDdv 300 (946)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999987
No 301
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.39 E-value=0.079 Score=57.38 Aligned_cols=59 Identities=20% Similarity=0.079 Sum_probs=43.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRD----HFDLKAWTCVSDDFDVVRLIKVILRSFVA 268 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 268 (946)
....++-|+|.+|+|||+|+..++-...... .-..++|++....|+++++ .+|++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 3568999999999999999998875322211 1126899999999988775 466666654
No 302
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.38 E-value=0.053 Score=51.38 Aligned_cols=117 Identities=17% Similarity=0.100 Sum_probs=58.8
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEE---eCCCCCHHHHHHHHHHHh-----cCCC----CCCccc---
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTC---VSDDFDVVRLIKVILRSF-----VADP----NVDNRD--- 276 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---~~~~~~~~~~~~~il~~l-----~~~~----~~~~~~--- 276 (946)
..|-|++..|.||||+|-..+- +...+=..+.+|- ......-..+++.+ ..+ +... .....+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4677888889999999988775 2222211233322 22122333333322 000 0000 000011
Q ss_pred HHHHHHHHHHHhCCc-eEEEEEcCCCCC---ChhhHhhhhccCCCCCCCcEEEEEcCCh
Q 043855 277 LILLQLQLKKQLSGK-KFLFVLDDVWNE---SYNDWVELSHPFEAGAPGSKIIVTTRNQ 331 (946)
Q Consensus 277 ~~~~~~~l~~~l~~k-r~LlVlDdv~~~---~~~~w~~~~~~l~~~~~gs~iivTtR~~ 331 (946)
....-...++.+... -=|||||++-.. .....+++...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 111222334444444 459999998432 2223455555555555677899999985
No 303
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.37 E-value=0.055 Score=55.95 Aligned_cols=88 Identities=15% Similarity=0.085 Sum_probs=54.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPN----------------- 271 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~----------------- 271 (946)
...+++.|+|.+|+|||++|.++.... .+ .=..++|++..+. ..++.+.+ .+++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 456899999999999999999996532 22 2246788888664 44554443 22321110
Q ss_pred --CCcccHHHHHHHHHHHhCC-ceEEEEEcCCC
Q 043855 272 --VDNRDLILLQLQLKKQLSG-KKFLFVLDDVW 301 (946)
Q Consensus 272 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 301 (946)
......+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112334555666666653 55689999974
No 304
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.35 E-value=0.033 Score=59.39 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.9
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+..+.|+|++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999984
No 305
>PRK10867 signal recognition particle protein; Provisional
Probab=95.35 E-value=0.08 Score=59.17 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=21.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+.+|.++|++|+||||.|..++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999998877775
No 306
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.33 E-value=0.072 Score=59.50 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+.++.++|++|+||||.|..++..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 34689999999999999998888763
No 307
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.33 E-value=0.55 Score=50.12 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=38.2
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHH
Q 043855 183 EAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRL 258 (946)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 258 (946)
+...+. .+....+..++... +.|.|.|++|+||||+|+.++. +.... .+.|..+...+..++
T Consensus 45 ~~y~f~-~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 45 PAYLFD-KATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred CCccCC-HHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCChhhc
Confidence 333443 33445566666432 4589999999999999999997 33322 235555555444433
No 308
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.057 Score=55.72 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=47.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccccc--ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVR--DHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQL 288 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 288 (946)
-++|.++|++|.|||+|.+++++.-.++ +.|....-+.+.. ..++.+. ..+ ...-...+-+.+++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKW----FsE---SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKW----FSE---SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHH----Hhh---hhhHHHHHHHHHHHHH
Confidence 3789999999999999999999975444 3343333343332 2222222 222 1233444555666666
Q ss_pred CCce--EEEEEcCCC
Q 043855 289 SGKK--FLFVLDDVW 301 (946)
Q Consensus 289 ~~kr--~LlVlDdv~ 301 (946)
+++. ..+.+|.|.
T Consensus 246 ~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVE 260 (423)
T ss_pred hCCCcEEEEEeHHHH
Confidence 6654 345578883
No 309
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.29 E-value=0.021 Score=60.68 Aligned_cols=51 Identities=25% Similarity=0.326 Sum_probs=44.7
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhc
Q 043855 183 EAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
+..++|.++.++++++.+.....+.+..-+|+.++|+.|.||||||+.+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999876554566779999999999999999999987
No 310
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.23 Score=55.85 Aligned_cols=156 Identities=19% Similarity=0.256 Sum_probs=87.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhC
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLS 289 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 289 (946)
.+.=|.++|++|.|||-||++|+| .-+.+| ++|... +++...-+ .+...+...+++.-.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP--------ELlNkYVG------ESErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP--------ELLNKYVG------ESERAVRQVFQRARA 602 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH--------HHHHHHhh------hHHHHHHHHHHHhhc
Confidence 356678999999999999999999 444444 444332 22222222 223344445555555
Q ss_pred CceEEEEEcCCCCC-----ChhhH------hhhhccCCC--CCCCcEEEEEcCChhHHHh--hC---CCCcEeCCCCChH
Q 043855 290 GKKFLFVLDDVWNE-----SYNDW------VELSHPFEA--GAPGSKIIVTTRNQGVAAI--MG---TVPAYQLKKLSDH 351 (946)
Q Consensus 290 ~kr~LlVlDdv~~~-----~~~~w------~~~~~~l~~--~~~gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~ 351 (946)
.-+++|+||.++.. +...| .++..-+.. ...|.-||-.|..+++... +. -...+-++.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 67999999998542 11122 222222221 2256667777776665432 11 1234556666778
Q ss_pred HHHHHHHHhhcCCCCC-CCchhHHHHHHHHHHhcCCCh
Q 043855 352 DCLALFARHSLGTRDF-SSHKSLEKIGREIVTKCDGLP 388 (946)
Q Consensus 352 e~~~Lf~~~a~~~~~~-~~~~~l~~~~~~i~~~~~GlP 388 (946)
|-.++++...-....+ ...-++++|++. .+|.|.-
T Consensus 683 eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 683 ERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 8888888765432222 223356666653 3555553
No 311
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.24 E-value=0.11 Score=50.63 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
-.+++|+|+.|.|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 469999999999999999999863
No 312
>PRK13948 shikimate kinase; Provisional
Probab=95.22 E-value=0.15 Score=49.94 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
....|.++|+.|+||||+++.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999999999999973
No 313
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.087 Score=59.48 Aligned_cols=89 Identities=17% Similarity=0.048 Sum_probs=45.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCH--HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDV--VRLIKVILRSFVADPNVDNRDLILLQLQLKKQ 287 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 287 (946)
...+++|+|++|+||||++..++.....+.....+..++.. .+.. .+.++.....++.... ...+...+...+.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~-~a~d~~~L~~aL~~l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVH-EADSAESLLDLLERL 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeE-ecCcHHHHHHHHHHh
Confidence 45899999999999999998888632111112234444442 2221 2222222222222111 222334444444433
Q ss_pred hCCceEEEEEcCCCC
Q 043855 288 LSGKKFLFVLDDVWN 302 (946)
Q Consensus 288 l~~kr~LlVlDdv~~ 302 (946)
. ..=+|++|....
T Consensus 427 -~-~~DLVLIDTaG~ 439 (559)
T PRK12727 427 -R-DYKLVLIDTAGM 439 (559)
T ss_pred -c-cCCEEEecCCCc
Confidence 3 345788888753
No 314
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.18 E-value=0.016 Score=56.16 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=43.2
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC--CcccHHHHHHHHHHHhCC
Q 043855 213 VLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV--DNRDLILLQLQLKKQLSG 290 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~~l~~~l~~ 290 (946)
++.|.|.+|+||||+|..+..... . ..+++.-...++ .+....|.......+.. .......+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~--~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG--L---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC--C---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 689999999999999999986421 1 133444333333 34444554433222110 111122344445443333
Q ss_pred ceEEEEEcCC
Q 043855 291 KKFLFVLDDV 300 (946)
Q Consensus 291 kr~LlVlDdv 300 (946)
.. ++++|.+
T Consensus 77 ~~-~VlID~L 85 (170)
T PRK05800 77 GR-CVLVDCL 85 (170)
T ss_pred CC-EEEehhH
Confidence 23 6888886
No 315
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.17 E-value=0.021 Score=63.74 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=36.3
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++||++.++.+...+... ..|.|.|++|+|||++|+.+...
T Consensus 21 ~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHH
Confidence 3899999999999888654 45789999999999999999973
No 316
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.17 E-value=0.16 Score=53.88 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=37.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSF 266 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 266 (946)
...++.|.|.+|+||||++.+++.... ..+=..++|++... ...++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 346888999999999999999887422 22123578888766 4556666665544
No 317
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.16 E-value=0.0092 Score=35.53 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=18.7
Q ss_pred ceeEEEecCCCCccCCccccCC
Q 043855 594 RLRVFSLCGYEIFELPDSIGEL 615 (946)
Q Consensus 594 ~Lr~L~L~~~~~~~lp~~i~~l 615 (946)
+|++||+++|.++.+|..|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887654
No 318
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.16 E-value=0.015 Score=58.18 Aligned_cols=81 Identities=22% Similarity=0.156 Sum_probs=43.7
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCC---ceEEEEeCCCCCHHHHHHHHHHHhcCC---CCCCcccHHHHHHHHHH
Q 043855 213 VLPIVGMGGLGKTTLAQLVYNDDRVRDHFD---LKAWTCVSDDFDVVRLIKVILRSFVAD---PNVDNRDLILLQLQLKK 286 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~---~~~wv~~~~~~~~~~~~~~il~~l~~~---~~~~~~~~~~~~~~l~~ 286 (946)
||+|.|++|+||||+|+.+...-.. ..+. ....+... .+....-....-...... ......+.+.+...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLD-DFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGG-GGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeec-ccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 7999999999999999999873211 1121 12322222 222222111111111111 11245677788888887
Q ss_pred HhCCceEEE
Q 043855 287 QLSGKKFLF 295 (946)
Q Consensus 287 ~l~~kr~Ll 295 (946)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 777665433
No 319
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.16 E-value=0.15 Score=55.22 Aligned_cols=91 Identities=11% Similarity=0.019 Sum_probs=53.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF-DVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQ 287 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 287 (946)
.+.+++.|+|+.|+||||++..++.....++ ..+.+|+....- ...+-++...+.++.... ...+..++...+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~l 280 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQYM 280 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHHH
Confidence 3568999999999999999999986432222 245666664321 223344444444443222 234455555555433
Q ss_pred hC-CceEEEEEcCCCC
Q 043855 288 LS-GKKFLFVLDDVWN 302 (946)
Q Consensus 288 l~-~kr~LlVlDdv~~ 302 (946)
-. +..=+|++|-...
T Consensus 281 ~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 281 TYVNCVDHILIDTVGR 296 (407)
T ss_pred HhcCCCCEEEEECCCC
Confidence 21 3446788888754
No 320
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.15 E-value=0.014 Score=46.89 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+|.|.|.+|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 321
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.14 E-value=0.015 Score=53.66 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 043855 214 LPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (946)
|+|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999984
No 322
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.14 E-value=0.13 Score=58.12 Aligned_cols=142 Identities=24% Similarity=0.311 Sum_probs=75.4
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHH-HHHHHhccccccccCCceEEEEeCCCC--CHHHHHHHHHHHhcCC
Q 043855 193 KKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTT-LAQLVYNDDRVRDHFDLKAWTCVSDDF--DVVRLIKVILRSFVAD 269 (946)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~il~~l~~~ 269 (946)
.++|.+.+. .-.||.|+|..|+|||| |||.+|.+--.. ... |.+.++- -...+.+.+.+.++..
T Consensus 361 R~~ll~~ir--------~n~vvvivgETGSGKTTQl~QyL~edGY~~---~Gm--IGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 361 RDQLLSVIR--------ENQVVVIVGETGSGKTTQLAQYLYEDGYAD---NGM--IGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHHHHh--------hCcEEEEEecCCCCchhhhHHHHHhccccc---CCe--eeecCchHHHHHHHHHHHHHHhCCc
Confidence 345555553 33799999999999998 777777652111 122 3344443 3444566666666443
Q ss_pred CCC---------C----------cccHHHHHHHHHHHhCCceEEEEEcCCCCCChhh--HhhhhccCCCCCCCcEEEEEc
Q 043855 270 PNV---------D----------NRDLILLQLQLKKQLSGKKFLFVLDDVWNESYND--WVELSHPFEAGAPGSKIIVTT 328 (946)
Q Consensus 270 ~~~---------~----------~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~--w~~~~~~l~~~~~gs~iivTt 328 (946)
-.. + ..+.--+...|.+..-.|=-.||+|...+.+... .-.+..........-|+|||+
T Consensus 428 lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtS 507 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTS 507 (1042)
T ss_pred cccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEee
Confidence 221 0 1122223333443333455689999997654311 111111111223466899998
Q ss_pred CChh---HHHhhCCCCcEeCCC
Q 043855 329 RNQG---VAAIMGTVPAYQLKK 347 (946)
Q Consensus 329 R~~~---v~~~~~~~~~~~l~~ 347 (946)
-..+ .++.++....+.+++
T Consensus 508 ATm~a~kf~nfFgn~p~f~IpG 529 (1042)
T KOG0924|consen 508 ATMDAQKFSNFFGNCPQFTIPG 529 (1042)
T ss_pred ccccHHHHHHHhCCCceeeecC
Confidence 7654 445555444444443
No 323
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.13 E-value=0.11 Score=57.09 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=51.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccccc--ccCCceEEEEeCCCCCHHH--HHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVR--DHFDLKAWTCVSDDFDVVR--LIKVILRSFVADPNVDNRDLILLQLQLK 285 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~--~~~~il~~l~~~~~~~~~~~~~~~~~l~ 285 (946)
..++|.++|+.|+||||.+..++...... .+-..+.-+++. .+.... -++...+.++.+.. ...+...+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~-~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK-AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE-eeCcHHHHHHHHH
Confidence 45799999999999999999888643221 111234445444 443322 24444444443222 2334455555555
Q ss_pred HHhCCceEEEEEcCCCCC
Q 043855 286 KQLSGKKFLFVLDDVWNE 303 (946)
Q Consensus 286 ~~l~~kr~LlVlDdv~~~ 303 (946)
+. .+.=++++|.....
T Consensus 251 ~~--~~~DlVLIDTaGr~ 266 (388)
T PRK12723 251 QS--KDFDLVLVDTIGKS 266 (388)
T ss_pred Hh--CCCCEEEEcCCCCC
Confidence 43 34568889988543
No 324
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.068 Score=58.78 Aligned_cols=54 Identities=33% Similarity=0.321 Sum_probs=39.6
Q ss_pred cccccchh---HHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhccccc
Q 043855 184 AHVYGREI---EKKEIVELLLRDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRV 237 (946)
Q Consensus 184 ~~~vGr~~---~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 237 (946)
.++-|-|+ |+++|+++|.++... +..-++=|.++|++|.|||-||++|+-...|
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 45667765 667888888765311 2234577889999999999999999985443
No 325
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.022 Score=52.66 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=31.4
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 043855 213 VLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVA 268 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 268 (946)
+|.|.|++|.||||+|+.++++....- | +.-.++++|++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~-------v------saG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL-------V------SAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce-------e------eccHHHHHHHHHcCC
Confidence 688999999999999999998543321 1 223567777777654
No 326
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.12 E-value=0.11 Score=50.81 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+++|+|+.|.|||||.+.++.-
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999973
No 327
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.10 E-value=0.06 Score=58.87 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=49.3
Q ss_pred cccccchhHHHHHHHHHhcC--------CCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccC---CceEEEEe-CC
Q 043855 184 AHVYGREIEKKEIVELLLRD--------DLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF---DLKAWTCV-SD 251 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~~-~~ 251 (946)
.+++|.++.++.+.-.+... +....-..+.|.++|++|+|||++|+.+... ....| +..-++.. ..
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 45889988888886555431 0001123467899999999999999999984 33333 22212211 12
Q ss_pred CCCHHHHHHHHHHHh
Q 043855 252 DFDVVRLIKVILRSF 266 (946)
Q Consensus 252 ~~~~~~~~~~il~~l 266 (946)
..+.+++++.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235667776665554
No 328
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.06 E-value=0.17 Score=49.05 Aligned_cols=120 Identities=13% Similarity=0.006 Sum_probs=57.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccc-ccc--CC---ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRV-RDH--FD---LKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQ 283 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~---~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 283 (946)
.-.+++|+|+.|.|||||++.+..-... .+. ++ .+.+ +.+...... ..+.+.+.......-..-+...-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~--~tv~~nl~~~~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPL--GTLREQLIYPWDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCcccc--ccHHHHhhccCCCCCCHHHHHHHH
Confidence 3468999999999999999999974221 111 11 1222 222221110 112222211011011112222333
Q ss_pred HHHHhCCceEEEEEcCCCCC-ChhhHhhhhccCCCCCCCcEEEEEcCChhHHH
Q 043855 284 LKKQLSGKKFLFVLDDVWNE-SYNDWVELSHPFEAGAPGSKIIVTTRNQGVAA 335 (946)
Q Consensus 284 l~~~l~~kr~LlVlDdv~~~-~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~~ 335 (946)
+.+.+-.++=++++|+--.. +......+...+... +..||++|.+.+...
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 45556667778889986432 222223333333222 356777777766554
No 329
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.05 E-value=0.066 Score=51.71 Aligned_cols=116 Identities=13% Similarity=0.037 Sum_probs=59.4
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD--FDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQL 288 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 288 (946)
..+++|+|+.|.|||||.+.++.-. ......+++.-..- .+..+..+ ..+..-. .-..-+...-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~--qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY--QLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE--ecCHHHHHHHHHHHHH
Confidence 4689999999999999999998632 22334444432111 11111111 1111100 0111122223355566
Q ss_pred CCceEEEEEcCCCCC-ChhhHhhhhccCCCC-CCCcEEEEEcCChhHH
Q 043855 289 SGKKFLFVLDDVWNE-SYNDWVELSHPFEAG-APGSKIIVTTRNQGVA 334 (946)
Q Consensus 289 ~~kr~LlVlDdv~~~-~~~~w~~~~~~l~~~-~~gs~iivTtR~~~v~ 334 (946)
-.++-++++|+.-.. +......+...+... ..|..||++|.+....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 677788899997432 222333333333211 2366788888876543
No 330
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.04 E-value=0.018 Score=54.23 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~ 233 (946)
||.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999985
No 331
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.04 E-value=0.075 Score=53.42 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=50.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceE-------EEEeCCCCCHHHH--HHHHHHHhcCCCCCCc-----
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKA-------WTCVSDDFDVVRL--IKVILRSFVADPNVDN----- 274 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~-------wv~~~~~~~~~~~--~~~il~~l~~~~~~~~----- 274 (946)
.++.+|.++||+|+||||..+.++.+..-+..-..++ -|...-+.|+++. .++..++....+....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 4567889999999999999999997533222211111 1222233455554 4567777766554322
Q ss_pred ---ccHHHHHHHHHHHhCCceEEEEEcCC
Q 043855 275 ---RDLILLQLQLKKQLSGKKFLFVLDDV 300 (946)
Q Consensus 275 ---~~~~~~~~~l~~~l~~kr~LlVlDdv 300 (946)
...++....+.+.-..-+|. ++|--
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~-liDTP 124 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYV-LIDTP 124 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEE-EEcCC
Confidence 23344444444443333343 44554
No 332
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.04 E-value=0.019 Score=58.23 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+..+|+|+|.+|+||||||+.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999974
No 333
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.03 E-value=0.027 Score=53.13 Aligned_cols=36 Identities=25% Similarity=0.091 Sum_probs=26.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEE
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTC 248 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 248 (946)
..||.|.|.+|+||||||+++... ....-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEec
Confidence 468999999999999999999983 333333444443
No 334
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.01 E-value=0.02 Score=60.19 Aligned_cols=95 Identities=23% Similarity=0.287 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCC
Q 043855 194 KEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVD 273 (946)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~ 273 (946)
..+++.+.... +-+.++|+.|+|||++++.......- ..| ...-++.+...+...+ ++++++-.......
T Consensus 23 ~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 23 SYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQL-QKIIESKLEKRRGR 92 (272)
T ss_dssp HHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHH-HHCCCTTECECTTE
T ss_pred HHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHH-HHHHhhcEEcCCCC
Confidence 45566665432 56789999999999999998863221 111 1333444443333332 22222211110000
Q ss_pred cccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhH
Q 043855 274 NRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDW 308 (946)
Q Consensus 274 ~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w 308 (946)
. ..--.+|+.++++||+--...+.|
T Consensus 93 ~----------~gP~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 93 V----------YGPPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp E----------EEEESSSEEEEEEETTT-S---TT
T ss_pred C----------CCCCCCcEEEEEecccCCCCCCCC
Confidence 0 000146899999999965443443
No 335
>PRK05439 pantothenate kinase; Provisional
Probab=94.99 E-value=0.13 Score=54.57 Aligned_cols=82 Identities=16% Similarity=0.056 Sum_probs=46.0
Q ss_pred CCCcEEEEEEecCCChHHHHHHHHhcccccccc--CCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 043855 208 DGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDH--FDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLK 285 (946)
Q Consensus 208 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~ 285 (946)
.+..-+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+...+.+.+- ..+........-+.+.+...|.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHH
Confidence 35678999999999999999999886 22221 1223344444433333222210 0111111124566777777777
Q ss_pred HHhCCce
Q 043855 286 KQLSGKK 292 (946)
Q Consensus 286 ~~l~~kr 292 (946)
....++.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 6666654
No 336
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.99 E-value=0.031 Score=56.57 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 337
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.99 E-value=0.19 Score=48.06 Aligned_cols=126 Identities=17% Similarity=0.193 Sum_probs=69.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCC---------------------C----------------
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSD---------------------D---------------- 252 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~---------------------~---------------- 252 (946)
....+.|+|++|.||||+.+.+|...+... ..+|+.--+ +
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 447899999999999999999997543221 122222100 0
Q ss_pred -----CC---HHHHHHHHHHHhcCCCCC-----CcccHHHHHHHHHHHhCCceEEEEEcCCC-CCCh-hhHhhhhccCCC
Q 043855 253 -----FD---VVRLIKVILRSFVADPNV-----DNRDLILLQLQLKKQLSGKKFLFVLDDVW-NESY-NDWVELSHPFEA 317 (946)
Q Consensus 253 -----~~---~~~~~~~il~~l~~~~~~-----~~~~~~~~~~~l~~~l~~kr~LlVlDdv~-~~~~-~~w~~~~~~l~~ 317 (946)
.. ..+-..+.++..+..... .-..-++-...+.+.+-+++-+++=|.-- +.+. ..|+-+.-.-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 01 122222333333322210 11222333344667777888899888642 1111 245443222222
Q ss_pred CCCCcEEEEEcCChhHHHhhC
Q 043855 318 GAPGSKIIVTTRNQGVAAIMG 338 (946)
Q Consensus 318 ~~~gs~iivTtR~~~v~~~~~ 338 (946)
+..|..||++|-+.++.+.+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 347899999999998877654
No 338
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.97 E-value=0.084 Score=53.72 Aligned_cols=75 Identities=17% Similarity=0.041 Sum_probs=39.3
Q ss_pred EEEEEecCCChHHHHHHHHhccccc-cccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhC
Q 043855 213 VLPIVGMGGLGKTTLAQLVYNDDRV-RDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLS 289 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 289 (946)
+|+|.|.+|+||||+|+.+...... ... ..+..++...-+.....+.+. ..+.........+.+.+...+...-.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~-~~v~vi~~D~f~~~~~~~~~~-~~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDH-PNVELITTDGFLYPNKELIER-GLMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCC-CcEEEEecCcccCcHHHHHHh-hhhhcCCCcccCCHHHHHHHHHHHHC
Confidence 5899999999999999999873211 011 123444444433332222221 11111111244566666666665554
No 339
>PTZ00035 Rad51 protein; Provisional
Probab=94.96 E-value=0.18 Score=54.88 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=41.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcccccc----ccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVR----DHFDLKAWTCVSDDFDVVRLIKVILRSFVA 268 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 268 (946)
....++.|+|.+|+|||||+..++-..+.. ..=..++|++....|+.+++ .++++.++.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 456899999999999999999987533211 11135679998888887774 445555443
No 340
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.95 E-value=0.02 Score=57.94 Aligned_cols=26 Identities=35% Similarity=0.442 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+...+|+|+|++|+||||||+.++..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 35589999999999999999999873
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.94 E-value=0.12 Score=57.91 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+.+|.++|.+|+||||.|..++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~ 118 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY 118 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999999999874
No 342
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=1.4 Score=43.82 Aligned_cols=192 Identities=16% Similarity=0.189 Sum_probs=96.5
Q ss_pred ccccc-hhHHHHHHHHHhcCC-------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 185 HVYGR-EIEKKEIVELLLRDD-------LMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 185 ~~vGr-~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
++||+ +..+++|.+.+.-+- .-+-.+++-+.++|++|.|||-||++|+++. ..-|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----
Confidence 35664 666666666553221 0123467788899999999999999999842 3345666652
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh-----------h---hHhhhhccCC--CCCC
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY-----------N---DWVELSHPFE--AGAP 320 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~---~w~~~~~~l~--~~~~ 320 (946)
++.+..-++. ..-..++.-.-+ ..-+..|+.|.+++... + ..-++...+. ...+
T Consensus 216 ----elvqk~igeg---srmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 216 ----ELVQKYIGEG---SRMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred ----HHHHHHhhhh---HHHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 2222222211 111111111111 24577888888754210 0 0111222222 1234
Q ss_pred CcEEEEEcCChhHHHh--hC---CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 321 GSKIIVTTRNQGVAAI--MG---TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 321 gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
.-+||+.|..-++... +. ....++..+-+++.-.++++-+.-.- +...--+++.+++++....|.---++-+=|
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkm-nl~rgi~l~kiaekm~gasgaevk~vctea 364 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM-NLTRGINLRKIAEKMPGASGAEVKGVCTEA 364 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh-chhcccCHHHHHHhCCCCccchhhhhhhhh
Confidence 5688887766554322 11 23457777777776677776543211 111112455555555443333334444445
Q ss_pred hhh
Q 043855 396 GLL 398 (946)
Q Consensus 396 ~~l 398 (946)
++.
T Consensus 365 gm~ 367 (404)
T KOG0728|consen 365 GMY 367 (404)
T ss_pred hHH
Confidence 543
No 343
>PRK14974 cell division protein FtsY; Provisional
Probab=94.92 E-value=0.15 Score=55.15 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=47.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCH--HHHHHHHHHHhcCCCCC--CcccHHH-HHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDV--VRLIKVILRSFVADPNV--DNRDLIL-LQLQL 284 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~--~~~~~~~-~~~~l 284 (946)
+..++.++|++|+||||++..++....- ..+ .++.++ .+.+.. .+-++.....++..... ...+... +...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 4689999999999999988888763221 223 233343 333332 23344455555432211 1122222 22323
Q ss_pred HHHhCCceEEEEEcCCCCC
Q 043855 285 KKQLSGKKFLFVLDDVWNE 303 (946)
Q Consensus 285 ~~~l~~kr~LlVlDdv~~~ 303 (946)
...-....=+|++|.....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 3222222238899988554
No 344
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.91 E-value=0.11 Score=53.43 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=23.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+...+++|.|++|.|||||++.+..-
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999973
No 345
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.91 E-value=0.057 Score=57.41 Aligned_cols=87 Identities=20% Similarity=0.107 Sum_probs=51.3
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CcccHHHHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV----DNRDLILLQLQL 284 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 284 (946)
+..+++-|+|+.|+||||||.++... ....-...+||+....++... +++++.+... .+...++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 34579999999999999999999873 333445789999988877644 3444433221 122233334444
Q ss_pred HHHhC-CceEEEEEcCCCC
Q 043855 285 KKQLS-GKKFLFVLDDVWN 302 (946)
Q Consensus 285 ~~~l~-~kr~LlVlDdv~~ 302 (946)
...++ +.--++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 44444 3445889998843
No 346
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.90 E-value=0.13 Score=57.00 Aligned_cols=51 Identities=31% Similarity=0.314 Sum_probs=35.9
Q ss_pred ccccccchhHHHHHHHHHh----c--C--CCCCC----CCcEEEEEEecCCChHHHHHHHHhc
Q 043855 183 EAHVYGREIEKKEIVELLL----R--D--DLMND----GGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~----~--~--~~~~~----~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
+..++|.++.++.+...+. . . ....+ -....+.++|++|+|||++|+.++.
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 3568999999988866551 1 0 00000 1135789999999999999999996
No 347
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.29 Score=56.99 Aligned_cols=158 Identities=18% Similarity=0.127 Sum_probs=84.1
Q ss_pred cccccchhHHHHHHH---HHhcCCCC----CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVE---LLLRDDLM----NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~---~L~~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
.++.|.+..++.+.+ +....... +-...+.+.++|++|.|||.||+++++ ..+.+|- .+...
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi-----~v~~~---- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFI-----SVKGS---- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEE-----EeeCH----
Confidence 345566655554443 33322110 124556899999999999999999998 3334442 22211
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCC-------h----hhHhhhhccCC--CCCCCcE
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNES-------Y----NDWVELSHPFE--AGAPGSK 323 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~----~~w~~~~~~l~--~~~~gs~ 323 (946)
+++.... ......+...+...-+..+..|++|++...- . .....+...+. ....+..
T Consensus 311 ----~l~sk~v------Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 311 ----ELLSKWV------GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred ----HHhcccc------chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceE
Confidence 1111111 1122333444445556789999999984310 0 11122222222 1223334
Q ss_pred EEEEcCChhHHHh-h----CCCCcEeCCCCChHHHHHHHHHhhc
Q 043855 324 IIVTTRNQGVAAI-M----GTVPAYQLKKLSDHDCLALFARHSL 362 (946)
Q Consensus 324 iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~a~ 362 (946)
||-||........ + .-...+.+.+-+.++..+.|..+.-
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 5555555433221 1 1134677888888999999988764
No 348
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.86 E-value=0.09 Score=62.71 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=80.5
Q ss_pred cccccchhHHHHHHHHHh---cCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLL---RDDL---MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.++.|.+..++++.+.+. .... ....-.+-|.|+|++|.|||++|+.++.. ....| +.++.++
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------
Confidence 356777766666555432 2110 00111234889999999999999999873 33232 2222221
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCC----------hhhHhhhhcc----CC--CCCCC
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNES----------YNDWVELSHP----FE--AGAPG 321 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~w~~~~~~----l~--~~~~g 321 (946)
+. ....+ .....+...+...-...+.+|+||+++... ...+...... +. ....+
T Consensus 221 ~~----~~~~g------~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 221 FV----EMFVG------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred hH----Hhhhc------ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 11 11111 111222333333344568999999985421 1122222111 11 11234
Q ss_pred cEEEEEcCChhHHHh-h-C---CCCcEeCCCCChHHHHHHHHHhhc
Q 043855 322 SKIIVTTRNQGVAAI-M-G---TVPAYQLKKLSDHDCLALFARHSL 362 (946)
Q Consensus 322 s~iivTtR~~~v~~~-~-~---~~~~~~l~~L~~~e~~~Lf~~~a~ 362 (946)
.-||.||...+.... + . -...+.+...+.++-.+++..+.-
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 456667776654321 1 1 234677777777777788777653
No 349
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.86 E-value=0.2 Score=57.96 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=35.7
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++|+.....++...+.... .....|.|+|.+|+|||++|+.++..
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 58899888888777664332 22346789999999999999999874
No 350
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.85 E-value=0.00094 Score=64.95 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=70.3
Q ss_pred hhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCe
Q 043855 588 QLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHH 667 (946)
Q Consensus 588 ~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 667 (946)
.+..++...+||++.|.+..+-..++-+..|..|+++.|.|..+|..++.+..+..+++..| .....|.+.++++.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 44567778888888888777777788888888888888888888888888888888888776 67888888888888888
Q ss_pred eecCCCC
Q 043855 668 LNNSNTD 674 (946)
Q Consensus 668 L~l~~~~ 674 (946)
++.-++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 8888776
No 351
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.81 E-value=0.13 Score=54.19 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=48.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH--HHHHHHHHHhcCCCC--CCcccH-HHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV--RLIKVILRSFVADPN--VDNRDL-ILLQLQ 283 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~il~~l~~~~~--~~~~~~-~~~~~~ 283 (946)
...+++.++|++|+||||++..++... ...-..+++++.. .+... +-+....+..+.... ....+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 356899999999999999999888633 2222245555543 33332 223333344332110 011122 222233
Q ss_pred HHHHhCCceEEEEEcCCCC
Q 043855 284 LKKQLSGKKFLFVLDDVWN 302 (946)
Q Consensus 284 l~~~l~~kr~LlVlDdv~~ 302 (946)
+.....+..=++++|-.-.
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 4444444455788887744
No 352
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.81 E-value=0.019 Score=55.94 Aligned_cols=26 Identities=42% Similarity=0.414 Sum_probs=23.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDR 236 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 236 (946)
..+|+|-||-|+||||||+.+.++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 47899999999999999999998544
No 353
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.81 E-value=0.12 Score=54.46 Aligned_cols=80 Identities=16% Similarity=0.069 Sum_probs=42.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF--DLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKK 286 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 286 (946)
..+.+|+|.|..|+||||+|+.+..- ..... ..+..++...-....+..... ..+.........+.+.+...+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l--l~~~~~~g~V~vi~~D~f~~~~~~l~~~-g~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL--LSRWPEHRKVELITTDGFLHPNQVLKER-NLMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCceEEEecccccccHHHHHHc-CCccccCCChhccHHHHHHHHHH
Confidence 46789999999999999999877541 21111 123344443333222222221 00111111245566667666666
Q ss_pred HhCCc
Q 043855 287 QLSGK 291 (946)
Q Consensus 287 ~l~~k 291 (946)
.-.++
T Consensus 137 Lk~g~ 141 (290)
T TIGR00554 137 LKSGK 141 (290)
T ss_pred HHCCC
Confidence 65554
No 354
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.79 E-value=0.11 Score=58.49 Aligned_cols=88 Identities=17% Similarity=0.098 Sum_probs=46.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCH--HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDV--VRLIKVILRSFVADPNVDNRDLILLQLQLKKQL 288 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 288 (946)
.+++.++|++|+||||++..++........-..+..|+... +.. .+-++...+.++.... ...+...+...+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~-~~~~~~~l~~~l~~~- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVE-VVYDPKELAKALEQL- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceE-ccCCHHhHHHHHHHh-
Confidence 46999999999999999888876322112223455666533 221 1222222333332221 223334455555442
Q ss_pred CCceEEEEEcCCCC
Q 043855 289 SGKKFLFVLDDVWN 302 (946)
Q Consensus 289 ~~kr~LlVlDdv~~ 302 (946)
. ..=+||+|....
T Consensus 298 ~-~~DlVlIDt~G~ 310 (424)
T PRK05703 298 R-DCDVILIDTAGR 310 (424)
T ss_pred C-CCCEEEEeCCCC
Confidence 2 346788897643
No 355
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.78 E-value=0.097 Score=51.20 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
++.++|++|+||||+++.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998873
No 356
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.77 Score=54.13 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=97.5
Q ss_pred cccccchhHH---HHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEK---KEIVELLLRDDL---MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~---~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.++.|-++.+ ++++++|..++. -+..-++=+.++|++|.|||-||++++-...| -|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH-----
Confidence 4578887655 555566654431 12234677889999999999999999985433 23444432
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh---------------hhHhhhhccCCCCC--C
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY---------------NDWVELSHPFEAGA--P 320 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---------------~~w~~~~~~l~~~~--~ 320 (946)
+.++.+.+.. ..... ......=...+.++.+|+++.... ....++..-+.... .
T Consensus 379 ---EFvE~~~g~~---asrvr---~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ---EFVEMFVGVG---ASRVR---DLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ---HHHHHhcccc---hHHHH---HHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 1222222111 11111 111112234578888888743211 11222222222111 2
Q ss_pred CcEEEEEcCChhHHHh--hC---CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHH
Q 043855 321 GSKIIVTTRNQGVAAI--MG---TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAA 391 (946)
Q Consensus 321 gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 391 (946)
+.-++-+|+..++... +. -...+.++.-+.....++|..++-.... ..+..++++ |+...-|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHH
Confidence 2233446665555322 11 2356777777888888999888754322 134456666 888888877443
No 357
>PHA02244 ATPase-like protein
Probab=94.74 E-value=0.14 Score=55.20 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
-|.|+|++|+|||+||++++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999984
No 358
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.73 E-value=0.07 Score=58.39 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=50.3
Q ss_pred cccccchhHHHHHHHHHhcC--------CCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccC---CceEEEEe-CC
Q 043855 184 AHVYGREIEKKEIVELLLRD--------DLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF---DLKAWTCV-SD 251 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~~-~~ 251 (946)
..++|.++.++.+..++... ........+.|.++|++|+|||+||+.+... ....| +...|... ..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCcc
Confidence 45899999999888777431 0000112467899999999999999999873 33333 22212211 12
Q ss_pred CCCHHHHHHHHHHHh
Q 043855 252 DFDVVRLIKVILRSF 266 (946)
Q Consensus 252 ~~~~~~~~~~il~~l 266 (946)
..+...+++++....
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666666554
No 359
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.73 E-value=0.048 Score=53.18 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999985
No 360
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.69 E-value=0.11 Score=50.69 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=21.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+++|+|+.|.|||||.+.++.-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999963
No 361
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.69 E-value=0.83 Score=48.05 Aligned_cols=131 Identities=11% Similarity=0.015 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc------------ccCCceEEEEeCCCCCHHHHH
Q 043855 192 EKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVR------------DHFDLKAWTCVSDDFDVVRLI 259 (946)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------~~F~~~~wv~~~~~~~~~~~~ 259 (946)
.-+++...+... .-.+...++|+.|+||+++|..++..---. .|=| ..|+.-...
T Consensus 5 ~~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD-~~~i~p~~~------- 71 (290)
T PRK05917 5 AWEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPD-IHEFSPQGK------- 71 (290)
T ss_pred HHHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCC-EEEEecCCC-------
Confidence 345666666443 235677899999999999998887621000 0111 111110000
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHh-----CCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCC-hhH
Q 043855 260 KVILRSFVADPNVDNRDLILLQLQLKKQL-----SGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRN-QGV 333 (946)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~-~~v 333 (946)
...-..+++. .+.+.+ .+++=++|+|++...+...+..+...+.....++.+|++|.+ ..+
T Consensus 72 ------------~~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~l 138 (290)
T PRK05917 72 ------------GRLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRL 138 (290)
T ss_pred ------------CCcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhC
Confidence 0001222221 122222 355668899999888888888888877765566666665555 444
Q ss_pred H-HhhCCCCcEeCCCC
Q 043855 334 A-AIMGTVPAYQLKKL 348 (946)
Q Consensus 334 ~-~~~~~~~~~~l~~L 348 (946)
. ........+.+.++
T Consensus 139 l~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 139 PPTIRSRSLSIHIPME 154 (290)
T ss_pred cHHHHhcceEEEccch
Confidence 3 22334556666654
No 362
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.66 E-value=0.084 Score=61.37 Aligned_cols=133 Identities=14% Similarity=0.053 Sum_probs=69.2
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHH
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILR 264 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 264 (946)
+++|....+.++++.+..-.. .-.-|.|+|..|+||+++|+.+++... + .-...+.+++..-. .+.+..
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~-r-~~~pfv~inca~~~--~~~~e~--- 273 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP-R-GKKPFLALNCASIP--DDVVES--- 273 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC-C-CCCCeEEeccccCC--HHHHHH---
Confidence 588998888888776653321 223478999999999999999876321 1 11233455555432 222221
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHh-CCceEEEEEcCCCCCChhhHhhhhccCCCCC-----------CCcEEEEEcCCh
Q 043855 265 SFVADPNVDNRDLILLQLQLKKQL-SGKKFLFVLDDVWNESYNDWVELSHPFEAGA-----------PGSKIIVTTRNQ 331 (946)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~-----------~gs~iivTtR~~ 331 (946)
.+.+............. ...+ ....=.|+||+|+.........+...+..+. ...|||.||...
T Consensus 274 elFG~~~~~~~~~~~~~---~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 ELFGHAPGAYPNALEGK---KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred HhcCCCCCCcCCcccCC---CChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 22221110000000000 0011 1223347899998776655555555443321 234788877654
No 363
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=94.66 E-value=0.55 Score=43.91 Aligned_cols=83 Identities=13% Similarity=0.192 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHhHHhhhhhh
Q 043855 5 GEAILTASVDLLLNKLASDEIRSFARQEQIQADLMKWEEMLVMSKAVLDDAEEKK-KTDNSVKLWLGELQSLVYDVEDLL 83 (946)
Q Consensus 5 ~~~~~s~~v~~l~~~l~s~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~-~~~~~~~~wl~~lrd~ayd~ed~l 83 (946)
|+.+..|+++.+++.|...+..........+.-+++|..+++.|.=++++-+.-. .-|..-+.-++++.+..-++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555666677889999999999999999877643 223334677888888888899888
Q ss_pred hHHh
Q 043855 84 DEFQ 87 (946)
Q Consensus 84 D~~~ 87 (946)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8763
No 364
>PRK06762 hypothetical protein; Provisional
Probab=94.66 E-value=0.025 Score=54.94 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 365
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.64 E-value=0.053 Score=53.24 Aligned_cols=22 Identities=45% Similarity=0.606 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999973
No 366
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.63 E-value=0.022 Score=55.21 Aligned_cols=42 Identities=21% Similarity=0.121 Sum_probs=30.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccccc-ccCCceEEEEeCCCCC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVR-DHFDLKAWTCVSDDFD 254 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~ 254 (946)
..++.+.|+.|+|||.||+.+..- +. +.....+-++++.-.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcccc
Confidence 468899999999999999999983 33 3444556666655433
No 367
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.63 E-value=0.15 Score=52.09 Aligned_cols=121 Identities=15% Similarity=0.202 Sum_probs=66.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhcccc-----cc---c---cC---CceEEEEeCCCC------CH---------------
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDR-----VR---D---HF---DLKAWTCVSDDF------DV--------------- 255 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~-----~~---~---~F---~~~~wv~~~~~~------~~--------------- 255 (946)
..+++|+|+.|.|||||.+.+..-.+ +. . .+ ..+.||.=...+ ++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 37999999999999999999986211 11 0 01 134443321111 11
Q ss_pred -------HHHHHHHHHHhcCCCC----CCcccHHHHHH-HHHHHhCCceEEEEEcCCCC----CChhhHhhhhccCCCCC
Q 043855 256 -------VRLIKVILRSFVADPN----VDNRDLILLQL-QLKKQLSGKKFLFVLDDVWN----ESYNDWVELSHPFEAGA 319 (946)
Q Consensus 256 -------~~~~~~il~~l~~~~~----~~~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~----~~~~~w~~~~~~l~~~~ 319 (946)
.+...+.++.++...- ...-+-.+.++ .+.+.|..++=|+|||.--. ......-++...+...
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e- 188 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE- 188 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-
Confidence 1333444444433221 12223333333 46678888999999998532 2222333344444443
Q ss_pred CCcEEEEEcCChhH
Q 043855 320 PGSKIIVTTRNQGV 333 (946)
Q Consensus 320 ~gs~iivTtR~~~v 333 (946)
|..||+.|-+-+.
T Consensus 189 -g~tIl~vtHDL~~ 201 (254)
T COG1121 189 -GKTVLMVTHDLGL 201 (254)
T ss_pred -CCEEEEEeCCcHH
Confidence 7788888877543
No 368
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.62 E-value=0.47 Score=52.84 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+.+|.++|+.|+||||+|..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999998875
No 369
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.61 E-value=0.14 Score=56.25 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=48.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CcccHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV----DNRDLILLQLQLK 285 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 285 (946)
...++.|.|.+|+|||||+.+++... ...-..++|++..+. ..++ ..-+..++..... ...+.+.+...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 45799999999999999999998742 222245777776543 3332 2223444332211 1223344443332
Q ss_pred HHhCCceEEEEEcCC
Q 043855 286 KQLSGKKFLFVLDDV 300 (946)
Q Consensus 286 ~~l~~kr~LlVlDdv 300 (946)
+.+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235667888887
No 370
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.58 E-value=0.092 Score=58.41 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=49.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----C-CCcccH----HH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADP-----N-VDNRDL----IL 279 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~-~~~~~~----~~ 279 (946)
....++|+|..|+|||||++.+....+ ....++|....+.-++.++....+....... . .++.-. ..
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 346899999999999999999886322 2234455443344455555544444331110 0 011111 11
Q ss_pred HHHHHHHHh--CCceEEEEEcCCC
Q 043855 280 LQLQLKKQL--SGKKFLFVLDDVW 301 (946)
Q Consensus 280 ~~~~l~~~l--~~kr~LlVlDdv~ 301 (946)
....+.+++ +++..|+++||+-
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchH
Confidence 112233333 4889999999983
No 371
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.58 E-value=0.2 Score=51.99 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~ 233 (946)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999986
No 372
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.52 Score=53.84 Aligned_cols=56 Identities=23% Similarity=0.170 Sum_probs=36.1
Q ss_pred cccccchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccC
Q 043855 184 AHVYGREIEKKEIVELLLRDD-------LMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF 241 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F 241 (946)
.++=|-++-+.++.+...-+- ..+-..++-|..+|++|.|||++|+++++ .-...|
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF 496 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF 496 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe
Confidence 344456666666654443211 01224567888999999999999999999 444444
No 373
>PRK06547 hypothetical protein; Provisional
Probab=94.54 E-value=0.032 Score=54.20 Aligned_cols=26 Identities=42% Similarity=0.532 Sum_probs=23.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
....+|.|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
No 374
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.53 E-value=0.057 Score=54.72 Aligned_cols=63 Identities=27% Similarity=0.257 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHH
Q 043855 192 EKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRL 258 (946)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 258 (946)
+..++++.+.... ++..+|+|.|+||+|||||...+....+-+++=-.++-|+-|.+++--.+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 4456666665542 46789999999999999999998875443333334555555666654333
No 375
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.12 Score=50.65 Aligned_cols=119 Identities=17% Similarity=0.113 Sum_probs=59.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcC--CC-CC-Cc--------ccHH
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVA--DP-NV-DN--------RDLI 278 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~--~~-~~-~~--------~~~~ 278 (946)
..+++|+|+.|.|||||++.++.... .....+++.-....+.. ..+-..+.- +. .. .. -+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 46899999999999999999987421 12333333211100000 000011110 00 00 00 1112
Q ss_pred HH-HHHHHHHhCCceEEEEEcCCCCC-ChhhHhhhhccCCCC-CCCcEEEEEcCChhHHH
Q 043855 279 LL-QLQLKKQLSGKKFLFVLDDVWNE-SYNDWVELSHPFEAG-APGSKIIVTTRNQGVAA 335 (946)
Q Consensus 279 ~~-~~~l~~~l~~kr~LlVlDdv~~~-~~~~w~~~~~~l~~~-~~gs~iivTtR~~~v~~ 335 (946)
+. .-.+...+-.++=++++|+.-.. +......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 22 22355666778889999997432 222223333332211 13567888888776554
No 376
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.51 E-value=0.1 Score=52.43 Aligned_cols=84 Identities=19% Similarity=0.324 Sum_probs=50.6
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC-CCHHHHHHHHHHHhcCC-------CCCCcccH-----
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD-FDVVRLIKVILRSFVAD-------PNVDNRDL----- 277 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~-------~~~~~~~~----- 277 (946)
-.-+.|+|.+|+|||+|+..+.++.. -+..+++.+++. .++.++.+++...-..+ ...+....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 35788999999999999999998532 234477778765 34555555553321110 01011111
Q ss_pred ---HHHHHHHHHHhCCceEEEEEcCC
Q 043855 278 ---ILLQLQLKKQLSGKKFLFVLDDV 300 (946)
Q Consensus 278 ---~~~~~~l~~~l~~kr~LlVlDdv 300 (946)
-...+.++. +++..|+++||+
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred ccchhhhHHHhh--cCCceeehhhhh
Confidence 112333443 689999999998
No 377
>PRK15115 response regulator GlrR; Provisional
Probab=94.43 E-value=0.28 Score=56.34 Aligned_cols=46 Identities=24% Similarity=0.159 Sum_probs=32.6
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++|......++.+...... .....|.|.|.+|+|||++|+.+.+.
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----QSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----cCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 46777777766666543322 12245679999999999999999874
No 378
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.40 E-value=0.057 Score=49.45 Aligned_cols=41 Identities=22% Similarity=0.086 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 043855 191 IEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDD 235 (946)
Q Consensus 191 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (946)
++.+++.+.|...- ....+|.+.|.-|.||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34455555554321 234689999999999999999999853
No 379
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.39 E-value=0.047 Score=55.70 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
-|.|+|++|+||||+|+.++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999874
No 380
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.39 E-value=0.021 Score=51.23 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=18.6
Q ss_pred EEEEecCCChHHHHHHHHhccccccccCC
Q 043855 214 LPIVGMGGLGKTTLAQLVYNDDRVRDHFD 242 (946)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~ 242 (946)
|.|+|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999998 4555664
No 381
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.38 E-value=0.095 Score=54.86 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=18.3
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+.|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999974
No 382
>PRK03839 putative kinase; Provisional
Probab=94.35 E-value=0.029 Score=55.30 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999984
No 383
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.15 Score=54.13 Aligned_cols=51 Identities=25% Similarity=0.218 Sum_probs=35.7
Q ss_pred cccccchhHHHHHHHHHhcCCC------CCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDDL------MNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++.|.++.++-|.+...-+-. +-...-+-|..+|++|.|||-||++|+..
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHh
Confidence 4577777777766665532210 01234577889999999999999999983
No 384
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.35 E-value=0.22 Score=52.13 Aligned_cols=130 Identities=17% Similarity=0.080 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 043855 192 EKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPN 271 (946)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 271 (946)
..+.+...|... +...-+.|+|+.|.|||||.+.+..... .....+++.-.+ ....+-..++......-++
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEE-eecchhHHHHHHHhccccc
Confidence 344455555432 2457899999999999999999997322 222333332111 1111111233322221111
Q ss_pred C------Cc-ccHHHHHHHHHHHh-CCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhHHHh
Q 043855 272 V------DN-RDLILLQLQLKKQL-SGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGVAAI 336 (946)
Q Consensus 272 ~------~~-~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~~~ 336 (946)
. +. ..... ..-+...+ ...+=++++|.+-. .+.+..+...+. .|..||+||-...+...
T Consensus 168 ~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 168 HDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 0 00 00111 11122222 25788999999853 334555544442 47789999987666443
No 385
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.33 E-value=0.095 Score=58.45 Aligned_cols=50 Identities=28% Similarity=0.203 Sum_probs=35.0
Q ss_pred cccccchhHHHHHHHHHhc----CCC------CCCCCcEEEEEEecCCChHHHHHHHHhc
Q 043855 184 AHVYGREIEKKEIVELLLR----DDL------MNDGGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~----~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..++|.+..++.+...+.. ... ...-..+.+.++|++|+|||++|+.++.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4689999998887554421 000 0011235688999999999999999986
No 386
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.32 E-value=0.055 Score=55.61 Aligned_cols=64 Identities=25% Similarity=0.267 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHH
Q 043855 194 KEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKV 261 (946)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 261 (946)
.+++..+... .++..+|+|.|.||+|||||...+-...+-+++=-.++-|+-|++++--.++-+
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 4455555443 367889999999999999999988876555555456667777777765544443
No 387
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.31 E-value=0.034 Score=55.26 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+.++|.|+|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999863
No 388
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.31 E-value=0.024 Score=50.33 Aligned_cols=21 Identities=43% Similarity=0.583 Sum_probs=18.8
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 043855 214 LPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (946)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999998873
No 389
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.30 E-value=0.37 Score=48.45 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=35.5
Q ss_pred HHHHHHHhCCceEEEEEcCCC-CCChhhHhhhhccCCC--CCCCcEEEEEcCChhHHHhhC
Q 043855 281 QLQLKKQLSGKKFLFVLDDVW-NESYNDWVELSHPFEA--GAPGSKIIVTTRNQGVAAIMG 338 (946)
Q Consensus 281 ~~~l~~~l~~kr~LlVlDdv~-~~~~~~w~~~~~~l~~--~~~gs~iivTtR~~~v~~~~~ 338 (946)
.-.+.+.|-..+-+|+-|+-- +-+...=..+...+.. ...|..||+.|-++.+|..+.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 345667777888888888742 1122222223222222 235778999999999998754
No 390
>PHA00729 NTP-binding motif containing protein
Probab=94.28 E-value=0.054 Score=54.36 Aligned_cols=25 Identities=48% Similarity=0.549 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467899999999999999999983
No 391
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.28 E-value=0.1 Score=57.55 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=20.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
-.+++|+|++|.||||||+.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 46899999999999999999975
No 392
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.26 E-value=0.086 Score=50.00 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 393
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.25 E-value=0.047 Score=52.61 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
....+++|+|..|+|||||++.+...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 35679999999999999999999963
No 394
>PRK04040 adenylate kinase; Provisional
Probab=94.17 E-value=0.038 Score=54.62 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+|.|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 395
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.15 E-value=0.22 Score=55.40 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 396
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.15 E-value=0.21 Score=51.68 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=34.8
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKV 261 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 261 (946)
...+++.|.|.+|+|||++|.++.... . ..-...+||+..+ +..++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 356899999999999999999876531 1 2235678888766 44455444
No 397
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.10 E-value=0.085 Score=47.29 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=35.1
Q ss_pred ccccchhHHHHHHHHHhcCC-CCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 185 HVYGREIEKKEIVELLLRDD-LMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~-~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++|-+-..+.+++.+..-- .+...++-|++..|++|+|||.+++.++++
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 36676666665555553211 013467889999999999999998888875
No 398
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.09 E-value=0.14 Score=56.82 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=50.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCC-----CcccH--H---
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF-DVVRLIKVILRSFVADPNV-----DNRDL--I--- 278 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~-----~~~~~--~--- 278 (946)
....++|+|..|+|||||++.++... ..+.++.+-+++.. .+.++..+++..-...... ..... .
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34678999999999999999998632 12455556666654 3444555443331111100 11111 1
Q ss_pred -HHHHHHHHHh--CCceEEEEEcCCC
Q 043855 279 -LLQLQLKKQL--SGKKFLFVLDDVW 301 (946)
Q Consensus 279 -~~~~~l~~~l--~~kr~LlVlDdv~ 301 (946)
.....+.+++ +++..|+++||+-
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 1112233444 5899999999983
No 399
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.21 Score=53.83 Aligned_cols=84 Identities=21% Similarity=0.190 Sum_probs=53.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CcccHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV----DNRDLILLQLQLK 285 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 285 (946)
..+++.|-|-+|||||||.-+++.+ ....- .+.+|+-.+. ..++ +--+..++..... ...+.+.+.+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 4579999999999999999999984 33333 5677766554 3332 2234455433321 2344555544444
Q ss_pred HHhCCceEEEEEcCCCC
Q 043855 286 KQLSGKKFLFVLDDVWN 302 (946)
Q Consensus 286 ~~l~~kr~LlVlDdv~~ 302 (946)
+ .++-++|+|-+..
T Consensus 166 ~---~~p~lvVIDSIQT 179 (456)
T COG1066 166 Q---EKPDLVVIDSIQT 179 (456)
T ss_pred h---cCCCEEEEeccce
Confidence 3 6889999999854
No 400
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.06 E-value=0.14 Score=61.09 Aligned_cols=86 Identities=17% Similarity=0.086 Sum_probs=56.3
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CcccHHHHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV----DNRDLILLQLQL 284 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 284 (946)
...+++-|.|++|+||||||.+++... ...=..++|++..+.++.. .+++++.+... .....+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a--~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 356899999999999999998876532 2222457899988887743 55666543321 222334444555
Q ss_pred HHHhC-CceEEEEEcCCC
Q 043855 285 KKQLS-GKKFLFVLDDVW 301 (946)
Q Consensus 285 ~~~l~-~kr~LlVlDdv~ 301 (946)
...++ ++--|||+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 456789999984
No 401
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.99 E-value=0.073 Score=50.46 Aligned_cols=36 Identities=28% Similarity=0.468 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 043855 191 IEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDD 235 (946)
Q Consensus 191 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (946)
+.+++|.++|. + +++.++|..|+|||||+..+..+.
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 45677888872 2 789999999999999999999853
No 402
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.95 E-value=0.0064 Score=70.81 Aligned_cols=160 Identities=23% Similarity=0.293 Sum_probs=99.8
Q ss_pred CCCCcceEEEeecCCCC---CCcCcCCCCCCCccEEEEecC-CCCCCCC-----CCCCCCCCceeeeccccCceeeCccc
Q 043855 774 PHKNLEQICISGYGGTE---FPTWLGDFSFSNLVTLKFEDC-GMCTSLP-----SVGQLPSLKHLVVRRMSRVKRLGSEF 844 (946)
Q Consensus 774 ~~~~L~~L~l~~~~~~~---~p~~~~~~~l~~L~~L~L~~~-~~~~~l~-----~l~~l~~L~~L~L~~~~~l~~~~~~~ 844 (946)
.+++|+.|.+.++.... +-.... .+++|+.|++++| ......+ ....+++|+.|+++.|..+++.+...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALAL--KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHh--hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 37899999998875322 111222 5789999999984 3322211 34457899999999987766665444
Q ss_pred cCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCcccc----CCCCCCCCCEEEEccc---cc
Q 043855 845 YGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGT----LPERLPELKMFVIQSC---EE 917 (946)
Q Consensus 845 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~----lp~~l~~L~~L~i~~c---~~ 917 (946)
... .+++|+.|.+.+|..+.+-. .... ...+|+|++|+++.|..+++. +..++++|+.|.+..+ +.
T Consensus 264 l~~----~c~~L~~L~l~~c~~lt~~g-l~~i--~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~ 336 (482)
T KOG1947|consen 264 LAS----RCPNLETLSLSNCSNLTDEG-LVSI--AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPS 336 (482)
T ss_pred HHh----hCCCcceEccCCCCccchhH-HHHH--HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCcc
Confidence 332 27899999988887644321 1100 246889999999999876421 1234666666665444 34
Q ss_pred ccc----cCCCCC--CccEEEEcCCCCCCCC
Q 043855 918 LLV----SVTSLP--TLCRFKIGGCKNVPDF 942 (946)
Q Consensus 918 l~~----~l~~l~--~L~~L~l~~c~~l~~l 942 (946)
+.. .+.... .+..+.+.+|++++.+
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~ 367 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDL 367 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchh
Confidence 421 122222 6777888888887653
No 403
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.95 E-value=0.041 Score=54.24 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+++|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 404
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.93 E-value=0.59 Score=50.29 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=32.8
Q ss_pred cEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHH
Q 043855 342 AYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAA 391 (946)
Q Consensus 342 ~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai 391 (946)
++++++++.+|+..++.-.+-.+--. .....+...+++.--.+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~-~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLR-SRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccc-cCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999988765432211 11233455667777778988543
No 405
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.92 E-value=0.11 Score=54.80 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=36.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD 252 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 252 (946)
...+++.|+|.+|+|||++|.++.. +...+...++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 4568999999999999999999998 45555888999998874
No 406
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.91 E-value=0.23 Score=51.45 Aligned_cols=92 Identities=17% Similarity=0.126 Sum_probs=54.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccc--cccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCC-------CCcccHH-
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRV--RDHFDLKAWTCVSDDF-DVVRLIKVILRSFVADPN-------VDNRDLI- 278 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~-------~~~~~~~- 278 (946)
+-.-++|.|..|+|||+|+..+.+...+ +.+-+.++++-+.+.. ++.++..++.+.=..... .+..-..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3456799999999999999999875331 1234677888887764 455555555442111110 0111111
Q ss_pred ---HHHHHHHHHh---CCceEEEEEcCCC
Q 043855 279 ---LLQLQLKKQL---SGKKFLFVLDDVW 301 (946)
Q Consensus 279 ---~~~~~l~~~l---~~kr~LlVlDdv~ 301 (946)
.....+.+++ ++++.|+++||+.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 1122344554 3689999999984
No 407
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.91 E-value=0.61 Score=48.26 Aligned_cols=98 Identities=19% Similarity=0.201 Sum_probs=68.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSG 290 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 290 (946)
.+.+.|+|+.|+|||+-++.+++.. ....-+..+..+....++..+......... .........+...+++
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~---~~~~d~~~~~~~~l~~ 164 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIICAAAFGATD---GTINDLTERLMIRLRD 164 (297)
T ss_pred CceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHcc
Confidence 3588899999999999999999832 223334566667777777777666655433 3344455556666788
Q ss_pred ceEEEEEcCCCCCChhhHhhhhccCCC
Q 043855 291 KKFLFVLDDVWNESYNDWVELSHPFEA 317 (946)
Q Consensus 291 kr~LlVlDdv~~~~~~~w~~~~~~l~~ 317 (946)
..-+++.|+.........+.++.....
T Consensus 165 ~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 165 TVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred CcceeeeehhhccChHHHHHHHHHHHh
Confidence 888999999877766777777665443
No 408
>PTZ00494 tuzin-like protein; Provisional
Probab=93.89 E-value=1.1 Score=48.96 Aligned_cols=167 Identities=12% Similarity=0.112 Sum_probs=101.7
Q ss_pred ccccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 181 VNEAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 181 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
.....+|.|++|-..+...|.+.+. ..++++.+.|.-|.||++|.+.....+.+ ..++|++...- +-++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHH
Confidence 3456789999998888888876643 56899999999999999999998875433 45678887654 4477
Q ss_pred HHHHHhcCCCCCC-cccHHHHHHHH---HHHhCCceEEEEEc--CCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhHH
Q 043855 261 VILRSFVADPNVD-NRDLILLQLQL---KKQLSGKKFLFVLD--DVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGVA 334 (946)
Q Consensus 261 ~il~~l~~~~~~~-~~~~~~~~~~l---~~~l~~kr~LlVlD--dv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~ 334 (946)
.+.+.++.+.-.. .+-.+-+.+.. .....++.-+||+- +-.+.. .-+.+. ..|.....-|.|++----+.+.
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~-RVYnE~-vaLacDrRlCHvv~EVplESLT 514 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLG-RVYGEV-VSLVSDCQACHIVLAVPMKALT 514 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHH-HHHHHH-HHHHccchhheeeeechHhhhc
Confidence 8888887654321 11122222222 22345565555553 221111 111111 1233334556777755444332
Q ss_pred Hh---hCCCCcEeCCCCChHHHHHHHHHh
Q 043855 335 AI---MGTVPAYQLKKLSDHDCLALFARH 360 (946)
Q Consensus 335 ~~---~~~~~~~~l~~L~~~e~~~Lf~~~ 360 (946)
-. ......|.+.+++..+|.++..+.
T Consensus 515 ~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 515 PLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 21 123357899999999999887654
No 409
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.87 E-value=0.39 Score=57.13 Aligned_cols=87 Identities=25% Similarity=0.281 Sum_probs=49.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFD--VVRLIKVILRSFVADPNVDNRDLILLQLQLKKQL 288 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 288 (946)
.+|+.++|+.|+||||.+.+++........-..+..++.. .+. ..+-++...+.++.... ...+..++...+.+ +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~-~~~~~~~l~~al~~-~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH-AVKDAADLRFALAA-L 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc-ccCCHHHHHHHHHH-h
Confidence 4799999999999999999998743211111234444433 333 33444444444443332 23345555555543 3
Q ss_pred CCceEEEEEcCCC
Q 043855 289 SGKKFLFVLDDVW 301 (946)
Q Consensus 289 ~~kr~LlVlDdv~ 301 (946)
+++ =+|++|-..
T Consensus 262 ~~~-D~VLIDTAG 273 (767)
T PRK14723 262 GDK-HLVLIDTVG 273 (767)
T ss_pred cCC-CEEEEeCCC
Confidence 444 367777765
No 410
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.84 E-value=0.036 Score=55.64 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~ 233 (946)
+|+|.|++|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 411
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.81 E-value=0.037 Score=54.79 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
||.|+|++|+||||+|+.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 412
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.78 E-value=0.057 Score=53.38 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=28.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEe
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCV 249 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 249 (946)
.+++.|+|+.|+|||||++.+.. .....|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 37899999999999999999998 45556655555444
No 413
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.75 E-value=0.073 Score=49.69 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=27.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCC
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSD 251 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 251 (946)
++|.|+|..|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999842 224455555666655
No 414
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.75 E-value=0.15 Score=57.30 Aligned_cols=91 Identities=21% Similarity=0.231 Sum_probs=54.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCC-----CcccH------
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF-DVVRLIKVILRSFVADPNV-----DNRDL------ 277 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~-----~~~~~------ 277 (946)
+-.-++|+|.+|+|||||+.++.+.... .+-+.++++-+.+.. .+.++..++...-...... ...+.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 4467899999999999999988875322 245677777776653 3555555554321111100 11111
Q ss_pred HHHHHHHHHHh---CCceEEEEEcCCC
Q 043855 278 ILLQLQLKKQL---SGKKFLFVLDDVW 301 (946)
Q Consensus 278 ~~~~~~l~~~l---~~kr~LlVlDdv~ 301 (946)
......+.+++ +++..|+++||+-
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccch
Confidence 11223345555 3789999999993
No 415
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.73 E-value=0.054 Score=53.09 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+|.|+|++|+||||+|+.++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999974
No 416
>PRK15453 phosphoribulokinase; Provisional
Probab=93.72 E-value=0.31 Score=50.54 Aligned_cols=80 Identities=13% Similarity=0.024 Sum_probs=43.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC--CHHHHHHHHH--HHhcC--CC-CCCcccHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF--DVVRLIKVIL--RSFVA--DP-NVDNRDLILLQ 281 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~il--~~l~~--~~-~~~~~~~~~~~ 281 (946)
.+..+|+|.|.+|+||||+|+.+... .+..=...+.++...-. +-.+.-..+. +.-+. +. ..++-+.+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~i--f~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKI--FRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH--HhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 35689999999999999999999852 21110123333333222 2222222221 11111 11 12566778888
Q ss_pred HHHHHHhCC
Q 043855 282 LQLKKQLSG 290 (946)
Q Consensus 282 ~~l~~~l~~ 290 (946)
..++.+.++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 888876653
No 417
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.33 Score=48.23 Aligned_cols=51 Identities=29% Similarity=0.264 Sum_probs=36.3
Q ss_pred cccccchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDD-------LMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++=|.+-.+.++.+...-+- ..+-+.++-|.++|++|.|||.||++|+++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 456677777777776553211 012345677889999999999999999995
No 418
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.69 E-value=0.17 Score=54.48 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.8
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 043855 214 LPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (946)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999864
No 419
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.68 E-value=0.041 Score=54.02 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 420
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.66 E-value=0.23 Score=49.90 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3479999999999999999999875
No 421
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.65 E-value=0.12 Score=56.42 Aligned_cols=64 Identities=22% Similarity=0.139 Sum_probs=46.8
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHH
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKV 261 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 261 (946)
.++|+++....+...+... +.+.+.|++|+|||+||+.++.. ... ...+|.+.......+++..
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~~---~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LGL---PFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hCC---CeEEEecCCCCCHHHhcCc
Confidence 3788888887777666544 45789999999999999999983 332 3456777777777666543
No 422
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.64 E-value=2.6 Score=44.57 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=48.1
Q ss_pred CCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh-hHHHh-hCCCCcEeCCCCChHHHHHHHHH
Q 043855 289 SGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ-GVAAI-MGTVPAYQLKKLSDHDCLALFAR 359 (946)
Q Consensus 289 ~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~ 359 (946)
.+++-++|+||+...+...+..+...+.....++.+|++|.+. .+... ......+.+.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 3566799999998888888888888887655667777766554 34332 23456777766 66666666653
No 423
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.61 E-value=0.18 Score=60.61 Aligned_cols=130 Identities=16% Similarity=0.068 Sum_probs=69.3
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHH
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILR 264 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 264 (946)
.++|....+.++.+.+..... ...-|.|+|..|+||+++|+.+++..... -...+.|++..-. ...+..++
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s~r~--~~pfv~vnc~~~~-~~~~~~el-- 396 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNESERA--AGPYIAVNCQLYP-DEALAEEF-- 396 (638)
T ss_pred ceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhCCcc--CCCeEEEECCCCC-hHHHHHHh--
Confidence 478888888888777754321 22347899999999999999998742111 1223445554432 12222222
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCC-----------CCcEEEEEcCC
Q 043855 265 SFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGA-----------PGSKIIVTTRN 330 (946)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~-----------~gs~iivTtR~ 330 (946)
.+....... .. .....-....=.|+||++..........+...+..+. ...|||.||..
T Consensus 397 --fg~~~~~~~--~~---~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 --LGSDRTDSE--NG---RLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred --cCCCCcCcc--CC---CCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 221110000 00 0000001123458999998777666666665553221 13467776654
No 424
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.60 E-value=0.3 Score=54.65 Aligned_cols=93 Identities=23% Similarity=0.276 Sum_probs=52.4
Q ss_pred CcEEEEEEecCCChHHHHH-HHHhccccc-----cccCCceEEEEeCCCCCHHHHHHHHHHHhcC-CCC-------CCcc
Q 043855 210 GFSVLPIVGMGGLGKTTLA-QLVYNDDRV-----RDHFDLKAWTCVSDDFDVVRLIKVILRSFVA-DPN-------VDNR 275 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~-~~~-------~~~~ 275 (946)
+-.-++|.|..|+|||+|| ..+.+...+ .++-+..+++.+++..+-..-+.+.+++-+. +.. .++.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467899999999999997 666664322 1233567888888775433323444444331 110 0111
Q ss_pred cHHH----HHHHHHHHh--CCceEEEEEcCCCC
Q 043855 276 DLIL----LQLQLKKQL--SGKKFLFVLDDVWN 302 (946)
Q Consensus 276 ~~~~----~~~~l~~~l--~~kr~LlVlDdv~~ 302 (946)
..+- ....+.+++ +++..|+|+||+..
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1111 111233333 57899999999943
No 425
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.55 E-value=0.053 Score=53.09 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999983
No 426
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.54 E-value=0.25 Score=52.95 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=47.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCC-------CCCcccHH----
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSD-DFDVVRLIKVILRSFVADP-------NVDNRDLI---- 278 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~il~~l~~~~-------~~~~~~~~---- 278 (946)
...++|+|..|.|||||.+.+...... +..+...+.. .-++.++....+..-.... ..+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTTA----DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 467899999999999999999974221 2233344443 3345555554444321111 00111111
Q ss_pred HHHHHHHHHh--CCceEEEEEcCCC
Q 043855 279 LLQLQLKKQL--SGKKFLFVLDDVW 301 (946)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVlDdv~ 301 (946)
.....+.+++ ++|..|+++||+-
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccch
Confidence 1112233333 5889999999983
No 427
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.48 E-value=0.055 Score=53.02 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999873
No 428
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.46 E-value=0.056 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
++++|+|+.|+||||||+.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999983
No 429
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.46 E-value=0.28 Score=55.48 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..|++++|+.|+||||++.+++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 479999999999999999999974
No 430
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.46 E-value=0.064 Score=53.96 Aligned_cols=22 Identities=27% Similarity=0.185 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999984
No 431
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.45 E-value=0.069 Score=49.76 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999988776
No 432
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.45 E-value=0.32 Score=46.75 Aligned_cols=118 Identities=15% Similarity=0.059 Sum_probs=59.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCce--EEEEeCCCCCHHHHHHHHHHHhc-----CC----CCCCccc---
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLK--AWTCVSDDFDVVRLIKVILRSFV-----AD----PNVDNRD--- 276 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~--~wv~~~~~~~~~~~~~~il~~l~-----~~----~~~~~~~--- 276 (946)
...|-|++..|.||||.|-.++-.. ....+... =|+.......-...+... .+. .. ......+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 3577888889999999998877621 11112211 123322222333333332 110 00 0001111
Q ss_pred HHHHHHHHHHHhCCce-EEEEEcCCCC---CChhhHhhhhccCCCCCCCcEEEEEcCCh
Q 043855 277 LILLQLQLKKQLSGKK-FLFVLDDVWN---ESYNDWVELSHPFEAGAPGSKIIVTTRNQ 331 (946)
Q Consensus 277 ~~~~~~~l~~~l~~kr-~LlVlDdv~~---~~~~~w~~~~~~l~~~~~gs~iivTtR~~ 331 (946)
....-...++.+...+ =|||||.+-. ...-..+++...+.....+.-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 1122233445554444 4999999832 11223445555555555677899999985
No 433
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=1.8 Score=50.43 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=60.7
Q ss_pred cccccchhHHHHHHHHHhcCC----CC--CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDD----LM--NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~----~~--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.++=|-++-+.+|.+-+.-+- -. +-.+.+=|.++|++|.|||-||++|+.. .. ..|++|..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecCH-----
Confidence 456678888888887653310 00 1123567889999999999999999973 21 345555442
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCC
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWN 302 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 302 (946)
+++...-++ +.+.+.+...+.=..++++|.||.+++
T Consensus 740 ---ELLNMYVGq------SE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMYVGQ------SEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHHhcc------hHHHHHHHHHHhhccCCeEEEeccccc
Confidence 222222222 223344444455556899999999865
No 434
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.44 E-value=0.05 Score=51.80 Aligned_cols=22 Identities=23% Similarity=0.584 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4689999999999999999874
No 435
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.44 E-value=0.15 Score=55.88 Aligned_cols=78 Identities=21% Similarity=0.232 Sum_probs=46.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccc----cccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRV----RDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQL 284 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l 284 (946)
..++=+.|+|..|.|||.|...+|+...+ +-||. +.+.++-+.+..... ....+.. +
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~-~~~~l~~----v 120 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRG-QDDPLPQ----V 120 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhC-CCccHHH----H
Confidence 35678999999999999999999986433 23332 233333333322111 2222333 3
Q ss_pred HHHhCCceEEEEEcCCCCCCh
Q 043855 285 KKQLSGKKFLFVLDDVWNESY 305 (946)
Q Consensus 285 ~~~l~~kr~LlVlDdv~~~~~ 305 (946)
.+.+.++..||.||.+.-.+.
T Consensus 121 a~~l~~~~~lLcfDEF~V~Di 141 (362)
T PF03969_consen 121 ADELAKESRLLCFDEFQVTDI 141 (362)
T ss_pred HHHHHhcCCEEEEeeeeccch
Confidence 344456667999999865543
No 436
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.37 E-value=0.12 Score=51.31 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=29.5
Q ss_pred EEEEEecCCChHHHHHHHHhcccccccc-CCceEEEEeCCCCCHHH
Q 043855 213 VLPIVGMGGLGKTTLAQLVYNDDRVRDH-FDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~ 257 (946)
.|+|+|-||+||||+|..+... -...+ | .+.-|+...++++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~-~VLvVDaDpd~nL~~ 45 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGY-NVLVVDADPDSNLPE 45 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCc-eEEEEeCCCCCChHH
Confidence 5899999999999999885542 22222 3 355677777766544
No 437
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.37 E-value=0.19 Score=55.97 Aligned_cols=88 Identities=19% Similarity=0.251 Sum_probs=50.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCC-----Cccc-H-----
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF-DVVRLIKVILRSFVADPNV-----DNRD-L----- 277 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~-----~~~~-~----- 277 (946)
....++|+|..|+|||||++.+++... .+.++.+-+.+.. .+.+...+.+..-+..... .... .
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346889999999999999999997432 1344556666554 3444444444332111100 1111 1
Q ss_pred HHHHHHHHHHh--CCceEEEEEcCCC
Q 043855 278 ILLQLQLKKQL--SGKKFLFVLDDVW 301 (946)
Q Consensus 278 ~~~~~~l~~~l--~~kr~LlVlDdv~ 301 (946)
......+.+++ +++..|+++||+-
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 11112233444 5889999999993
No 438
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.37 E-value=0.2 Score=52.47 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=30.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD 252 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 252 (946)
..+++.|.|.+|+|||++|.+++.... + .=..+++++...+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a-~-~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA-S-RGNPVLFVTVESP 75 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-h-CCCcEEEEEecCC
Confidence 458999999999999999999865321 1 2236778887643
No 439
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.36 E-value=0.12 Score=60.76 Aligned_cols=75 Identities=15% Similarity=0.060 Sum_probs=54.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|.++.++.|...+... +.+.|+|++|+||||+|+.+.... ...+++..+|..-+ ..+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np-~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNP-EDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCC-CcchHHHHHHHH
Confidence 45889988888888766432 368899999999999999999742 22345777886653 346677777777
Q ss_pred HHhcC
Q 043855 264 RSFVA 268 (946)
Q Consensus 264 ~~l~~ 268 (946)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 65543
No 440
>PRK06217 hypothetical protein; Validated
Probab=93.35 E-value=0.054 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEEecCCChHHHHHHHHhccc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYNDD 235 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~ 235 (946)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999743
No 441
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.34 E-value=0.18 Score=55.97 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=47.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-------CCcccHHH---
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPN-------VDNRDLIL--- 279 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-------~~~~~~~~--- 279 (946)
....++|+|..|+|||||++.+....+ ....++.....+.-.+.++..+.+..-..+.. .++.-...
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 346889999999999999999987422 12222322222333455555544333211111 01111111
Q ss_pred -HHHHHHHHh--CCceEEEEEcCCC
Q 043855 280 -LQLQLKKQL--SGKKFLFVLDDVW 301 (946)
Q Consensus 280 -~~~~l~~~l--~~kr~LlVlDdv~ 301 (946)
....+.+++ +++..|+++||+-
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 112234444 5789999999983
No 442
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.33 E-value=0.2 Score=48.06 Aligned_cols=116 Identities=18% Similarity=0.139 Sum_probs=59.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhC
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF--DVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLS 289 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 289 (946)
.+++|+|..|.|||||++.+..... .....+++...... ...+. ...+.--.+ ...-+...-.+...+-
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~q--lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEEL----RRRIGYVPQ--LSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHH----HhceEEEee--CCHHHHHHHHHHHHHh
Confidence 6899999999999999999997422 23344444322111 11111 111111100 1111122223455555
Q ss_pred CceEEEEEcCCCCC-ChhhHhhhhccCCCC-CCCcEEEEEcCChhHHHh
Q 043855 290 GKKFLFVLDDVWNE-SYNDWVELSHPFEAG-APGSKIIVTTRNQGVAAI 336 (946)
Q Consensus 290 ~kr~LlVlDdv~~~-~~~~w~~~~~~l~~~-~~gs~iivTtR~~~v~~~ 336 (946)
..+-++++|+.-.. +......+...+... ..+..++++|-+.+....
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 66788999998532 222233332222211 124567888877665554
No 443
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.33 E-value=0.063 Score=53.58 Aligned_cols=24 Identities=46% Similarity=0.542 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|.+|.|||||++.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 446899999999999999999984
No 444
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.32 E-value=0.34 Score=53.97 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=51.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-------CCCccc----HH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADP-------NVDNRD----LI 278 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~-------~~~~~~----~~ 278 (946)
....++|+|..|.|||||++.++..... ...++...-.+...+.+.++..+..-+... ...+.- ..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 4468899999999999999999975322 122333322333566666665554422111 001111 11
Q ss_pred HHHHHHHHHh--CCceEEEEEcCCCC
Q 043855 279 LLQLQLKKQL--SGKKFLFVLDDVWN 302 (946)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVlDdv~~ 302 (946)
..+..+.+++ ++++.||++||+-.
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHH
Confidence 1222233343 47899999999843
No 445
>PRK08149 ATP synthase SpaL; Validated
Probab=93.29 E-value=0.24 Score=55.07 Aligned_cols=88 Identities=16% Similarity=0.261 Sum_probs=49.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCCC-----Cccc-H-----
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD-FDVVRLIKVILRSFVADPNV-----DNRD-L----- 277 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~-----~~~~-~----- 277 (946)
+...++|+|..|+|||||++.++..... +.++...+... -++.++..+.+......... .... .
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~~----dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSEA----DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCCC----CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 4468899999999999999999974221 23333334333 34556655555532211100 0111 1
Q ss_pred HHHHHHHHHHh--CCceEEEEEcCCC
Q 043855 278 ILLQLQLKKQL--SGKKFLFVLDDVW 301 (946)
Q Consensus 278 ~~~~~~l~~~l--~~kr~LlVlDdv~ 301 (946)
......+.+++ ++|+.||++||+-
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchH
Confidence 11122233333 5899999999983
No 446
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.29 E-value=0.22 Score=55.77 Aligned_cols=90 Identities=22% Similarity=0.257 Sum_probs=52.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCC-----Ccc-cHH----
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF-DVVRLIKVILRSFVADPNV-----DNR-DLI---- 278 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~-----~~~-~~~---- 278 (946)
.-.-++|.|.+|+|||||+.++..+.... +=+.++++-+.+.. .+.+++.+++..-...... ... ...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 44678999999999999999887642211 11356677776654 4555555555431111100 111 111
Q ss_pred -HHHHHHHHHh---CCceEEEEEcCC
Q 043855 279 -LLQLQLKKQL---SGKKFLFVLDDV 300 (946)
Q Consensus 279 -~~~~~l~~~l---~~kr~LlVlDdv 300 (946)
.....+.+++ +++..||++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 1222345555 678999999998
No 447
>PRK05922 type III secretion system ATPase; Validated
Probab=93.28 E-value=0.32 Score=54.07 Aligned_cols=87 Identities=13% Similarity=0.246 Sum_probs=47.6
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCCC-----Cccc--HH----
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD-FDVVRLIKVILRSFVADPNV-----DNRD--LI---- 278 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~-----~~~~--~~---- 278 (946)
...++|+|..|+|||||.+.+..... .+....+.+++. ..+.+.+.+........... .... ..
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 45689999999999999999997421 123333334333 23444444443332221110 0110 11
Q ss_pred HHHHHHHHHh--CCceEEEEEcCCC
Q 043855 279 LLQLQLKKQL--SGKKFLFVLDDVW 301 (946)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVlDdv~ 301 (946)
.....+.+++ ++++.|+++||+-
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 1122234444 4899999999993
No 448
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.26 E-value=0.28 Score=50.49 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=30.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD 252 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 252 (946)
...++.|.|.+|.||||+|.++.... . ..-...+|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC
Confidence 45899999999999999999876532 1 12346788877543
No 449
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=93.25 E-value=0.52 Score=54.11 Aligned_cols=134 Identities=12% Similarity=0.059 Sum_probs=68.1
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHH
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILR 264 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 264 (946)
.++|.....+++...+.... ... ..+.|.|..|+||+++|+.+...... .. ...+.|++..-. .+.+..
T Consensus 140 ~lig~s~~~~~l~~~i~~~a---~~~-~~vli~Ge~GtGK~~lA~~ih~~s~~-~~-~~~v~v~c~~~~--~~~~~~--- 208 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIA---PSD-ITVLLLGESGTGKEVLARALHQLSDR-KD-KRFVAINCAAIP--ENLLES--- 208 (445)
T ss_pred ceeecCHHHHHHHHHHHHHh---CCC-CCEEEECCCCcCHHHHHHHHHHhCCc-CC-CCeEEEECCCCC--hHHHHH---
Confidence 47888887777777665322 123 33559999999999999999863211 11 123345554432 222222
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCC-----------CCcEEEEEcCCh
Q 043855 265 SFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGA-----------PGSKIIVTTRNQ 331 (946)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~-----------~gs~iivTtR~~ 331 (946)
.+.+.......... .......-....=.|+||++..........+...+..+. ...|||.||...
T Consensus 209 ~lfg~~~~~~~~~~--~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 209 ELFGYEKGAFTGAV--KQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQD 284 (445)
T ss_pred HhcCCCCCCcCCCc--cCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCC
Confidence 22221110000000 000000001223458899998776555555555443221 245888888654
No 450
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.25 E-value=0.064 Score=29.57 Aligned_cols=17 Identities=12% Similarity=0.341 Sum_probs=11.2
Q ss_pred CCccEEEEcCCCCCCCCC
Q 043855 926 PTLCRFKIGGCKNVPDFF 943 (946)
Q Consensus 926 ~~L~~L~l~~c~~l~~lp 943 (946)
++|+.|+|++|+ ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 578999999995 88887
No 451
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.19 E-value=0.085 Score=46.12 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=20.1
Q ss_pred cEEEEEEecCCChHHHHHHHHh
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVY 232 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~ 232 (946)
-..++|+|++|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4789999999999999999986
No 452
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.19 E-value=0.36 Score=50.62 Aligned_cols=88 Identities=19% Similarity=0.113 Sum_probs=48.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCcccHHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADP------NVDNRDLILLQL 282 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~------~~~~~~~~~~~~ 282 (946)
.+..++.|+|.+|+|||||+..+.+. ..... ..+.+ ..+..+..+ .+.++..+... ..-..+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~-~~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR--LKDSV-PCAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--hccCC-CEEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 46799999999999999999999873 33322 22222 222222222 12233332211 001233444555
Q ss_pred HHHHHhCCceEEEEEcCCCC
Q 043855 283 QLKKQLSGKKFLFVLDDVWN 302 (946)
Q Consensus 283 ~l~~~l~~kr~LlVlDdv~~ 302 (946)
.+........=++|++++..
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55555444456788999854
No 453
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.19 E-value=0.078 Score=53.16 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
....+|.|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 454
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.16 E-value=0.11 Score=50.92 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=28.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEe
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCV 249 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 249 (946)
...|++|+|++|+|||||.+-+.. ....=...+||.-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~g 63 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVDG 63 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEECC
Confidence 447999999999999999999886 3333446677654
No 455
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.16 E-value=0.2 Score=51.97 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=47.9
Q ss_pred CcEEEEEEecCCChHHHHH-HHHhccccccccCCce-EEEEeCCCC-CHHHHHHHHHHHhcCCC-------CCCcccH--
Q 043855 210 GFSVLPIVGMGGLGKTTLA-QLVYNDDRVRDHFDLK-AWTCVSDDF-DVVRLIKVILRSFVADP-------NVDNRDL-- 277 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~~~~~-~~~~~~~~il~~l~~~~-------~~~~~~~-- 277 (946)
+-.-++|+|.+|+|||+|| ..+.+. . +-+.+ +++-+.+.. .+.++..++...-..+. ..+....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3467899999999999995 666652 1 22333 566666653 35555555543211110 0011111
Q ss_pred ------HHHHHHHHHHhCCceEEEEEcCCC
Q 043855 278 ------ILLQLQLKKQLSGKKFLFVLDDVW 301 (946)
Q Consensus 278 ------~~~~~~l~~~l~~kr~LlVlDdv~ 301 (946)
-.+++.++. +++..|+|+||+-
T Consensus 144 ~a~~~a~aiAE~fr~--~G~~Vlvl~DslT 171 (274)
T cd01132 144 LAPYTGCAMGEYFMD--NGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEEEEcChH
Confidence 122333333 5789999999993
No 456
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.15 E-value=0.071 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEecCCChHHHHHHHHhccc
Q 043855 214 LPIVGMGGLGKTTLAQLVYNDD 235 (946)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~~ 235 (946)
|.|+|..|+|||||.+.++...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999999754
No 457
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.13 E-value=0.14 Score=50.52 Aligned_cols=42 Identities=26% Similarity=0.296 Sum_probs=30.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhc
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+++|-+..+..+.-.... .+-+.++|++|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 3578888877776655532 35788999999999999999975
No 458
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.13 E-value=0.33 Score=46.83 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=18.8
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 043855 214 LPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (946)
|.|+|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999973
No 459
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.11 E-value=0.082 Score=52.16 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4589999999999999999999874
No 460
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.09 E-value=0.071 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+|+|+|++|+||||||+.++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3478999999999999999999974
No 461
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=1.3 Score=48.58 Aligned_cols=71 Identities=13% Similarity=0.024 Sum_probs=39.8
Q ss_pred EEE-EEcCChhHHH--hhC---CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhh
Q 043855 323 KII-VTTRNQGVAA--IMG---TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGG 396 (946)
Q Consensus 323 ~ii-vTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 396 (946)
||| .||...+-.. .+. ..-.+.+.--+.+....||.+...... ++ .+..+|.+...|.-+.-..+++
T Consensus 339 RIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h----~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 339 RIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DH----RLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred eEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---Cc----chhHHHHHHhhcCccCHHHHHH
Confidence 655 4776554321 112 223577888899999999998764322 22 3344555555555554455555
Q ss_pred hhcc
Q 043855 397 LLRG 400 (946)
Q Consensus 397 ~l~~ 400 (946)
.|-.
T Consensus 412 ~lm~ 415 (457)
T KOG0743|consen 412 ELMK 415 (457)
T ss_pred HHhh
Confidence 5443
No 462
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.08 E-value=0.53 Score=50.64 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+++|+|+.|.|||||.+.+...
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999999864
No 463
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.08 E-value=0.62 Score=46.05 Aligned_cols=21 Identities=33% Similarity=0.195 Sum_probs=18.9
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~ 233 (946)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999984
No 464
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.06 E-value=0.062 Score=50.85 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999973
No 465
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.06 E-value=0.28 Score=54.60 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=50.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCC-----CcccH--HH--
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF-DVVRLIKVILRSFVADPNV-----DNRDL--IL-- 279 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~-----~~~~~--~~-- 279 (946)
+...++|.|..|+|||||.+.+++... -+.++.+-+.+.. .+.++....+..-...... ..... ..
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 446899999999999999999998432 2456777776654 3444443333221111000 11111 10
Q ss_pred --HHHHHHHHh--CCceEEEEEcCCC
Q 043855 280 --LQLQLKKQL--SGKKFLFVLDDVW 301 (946)
Q Consensus 280 --~~~~l~~~l--~~kr~LlVlDdv~ 301 (946)
....+.+++ ++++.|+++||+-
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 111233333 5899999999983
No 466
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.4 Score=48.00 Aligned_cols=56 Identities=25% Similarity=0.211 Sum_probs=38.1
Q ss_pred cccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccC
Q 043855 184 AHVYGREIEKKEIVELLLRDDL-------MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF 241 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F 241 (946)
+++=|=.++++++.+...-+-. -+-+.++-|.++|++|.|||-+|++|+| +....|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 3455667777777665432110 0223567788999999999999999999 555554
No 467
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.05 E-value=0.18 Score=59.39 Aligned_cols=74 Identities=16% Similarity=0.085 Sum_probs=48.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc-cCCceEEEEeCCCCCHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRD-HFDLKAWTCVSDDFDVVRLIKVI 262 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~i 262 (946)
.+++|.++.++.+...+... +.+.++|++|+||||+|+.+.+. +.. .|...+++.- ...+...+++.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n-~~~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPN-PEDPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeC-CCCCchHHHHHH
Confidence 46889998888777777432 24559999999999999999973 333 2333333222 223455567777
Q ss_pred HHHhcC
Q 043855 263 LRSFVA 268 (946)
Q Consensus 263 l~~l~~ 268 (946)
..+++.
T Consensus 87 ~~~~g~ 92 (608)
T TIGR00764 87 PAGEGR 92 (608)
T ss_pred HHhhch
Confidence 666544
No 468
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.03 E-value=0.38 Score=49.35 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=31.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVI 262 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 262 (946)
...++.|.|.+|.||||+|.+++... .+.. ..+++++... +..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 34699999999999999986665532 1222 3456666433 455655555
No 469
>PRK04328 hypothetical protein; Provisional
Probab=93.02 E-value=0.23 Score=51.78 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=31.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD 252 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 252 (946)
..+++.|.|.+|.|||+||.++.... . ..-...+||+..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCC
Confidence 46899999999999999999977632 2 22346788887663
No 470
>PRK13949 shikimate kinase; Provisional
Probab=93.02 E-value=0.067 Score=51.94 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
-|.|+|++|+||||+++.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999974
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.01 E-value=0.074 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++.|+|+.|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999874
No 472
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.00 E-value=0.0087 Score=57.52 Aligned_cols=96 Identities=17% Similarity=0.124 Sum_probs=53.3
Q ss_pred CCCcCcCCCCCCCccEEEEecCCCC-CCCCCCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccc
Q 043855 790 EFPTWLGDFSFSNLVTLKFEDCGMC-TSLPSVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWE 868 (946)
Q Consensus 790 ~~p~~~~~~~l~~L~~L~L~~~~~~-~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 868 (946)
+.|.+.. .-..++.++-+++.+. +.+..+..++.++.|.+.+|..+.+...+..+ +.+|+|+.|+|++|++++
T Consensus 92 ~lp~~~~--~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~----~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 92 SLPGPNA--DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG----GLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred cCCCCCC--CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc----ccccchheeeccCCCeec
Confidence 5555433 1234667777766542 34445666777777777777655554443333 236666666666666655
Q ss_pred cccccCCCCCCCCCCcccEeeecCCcC
Q 043855 869 DWIPCGSSQGIELFPNLREFRILRCPK 895 (946)
Q Consensus 869 ~~~~~~~~~~~~~~p~L~~L~l~~c~~ 895 (946)
+.. ......+++|+.|.|.+.+.
T Consensus 166 ~~G----L~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 166 DGG----LACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred hhH----HHHHHHhhhhHHHHhcCchh
Confidence 422 11134566666666665543
No 473
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.98 E-value=0.42 Score=56.16 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=59.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcccc-ccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCC--cccHHHHHHHHHHHh
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDR-VRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVD--NRDLILLQLQLKKQL 288 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~~l~~~l 288 (946)
++..|.|.+|.||||+++.+..... ....=...+.+.....--..++...+-..+..-.... ......-..-+.+.|
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 6889999999999999988876321 1111123555555544333333333322221100000 000000112222233
Q ss_pred C----C--------ce---EEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh
Q 043855 289 S----G--------KK---FLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ 331 (946)
Q Consensus 289 ~----~--------kr---~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~ 331 (946)
. + .+ =++|+|...-.+......+..+++ +++|+|+---..
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~ 302 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRD 302 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchh
Confidence 2 1 11 289999987666555566666665 567888765443
No 474
>PRK13947 shikimate kinase; Provisional
Probab=92.97 E-value=0.066 Score=52.24 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~ 233 (946)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999997
No 475
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.94 E-value=0.19 Score=55.99 Aligned_cols=91 Identities=15% Similarity=0.200 Sum_probs=54.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCC-----CCcccH------
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF-DVVRLIKVILRSFVADPN-----VDNRDL------ 277 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~-----~~~~~~------ 277 (946)
.-.-++|.|.+|+|||+|+.++..+.. +.+-+.++++-+.+.. .+.++..++...=..... ......
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 446789999999999999999887532 2334678888887765 344555554432111100 011111
Q ss_pred HHHHHHHHHHh---CCceEEEEEcCCC
Q 043855 278 ILLQLQLKKQL---SGKKFLFVLDDVW 301 (946)
Q Consensus 278 ~~~~~~l~~~l---~~kr~LlVlDdv~ 301 (946)
......+.+++ +++..|+++||+-
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChH
Confidence 11223345555 4689999999983
No 476
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.93 E-value=0.075 Score=50.06 Aligned_cols=20 Identities=40% Similarity=0.738 Sum_probs=18.6
Q ss_pred EEEEEecCCChHHHHHHHHh
Q 043855 213 VLPIVGMGGLGKTTLAQLVY 232 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~ 232 (946)
.|.|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 57899999999999999887
No 477
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.93 E-value=0.068 Score=49.81 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999974
No 478
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.89 E-value=0.14 Score=57.85 Aligned_cols=100 Identities=20% Similarity=0.223 Sum_probs=51.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceE-EEEeCCCC-CHHHHHHHHHHHhcCCCCC
Q 043855 195 EIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKA-WTCVSDDF-DVVRLIKVILRSFVADPNV 272 (946)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~-wv~~~~~~-~~~~~~~~il~~l~~~~~~ 272 (946)
++++.+..- +.-.-..|+|++|+|||||++.|++... ..+-++.+ .+-+.+.. .+.++.+.+-..+-.....
T Consensus 405 RvIDll~PI-----GkGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D 478 (672)
T PRK12678 405 RVIDLIMPI-----GKGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFD 478 (672)
T ss_pred eeeeeeccc-----ccCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCC
Confidence 455555443 3445678999999999999999998321 11223332 44455443 2333322221111111111
Q ss_pred Cccc----HHHHHHHHHHHh--CCceEEEEEcCC
Q 043855 273 DNRD----LILLQLQLKKQL--SGKKFLFVLDDV 300 (946)
Q Consensus 273 ~~~~----~~~~~~~l~~~l--~~kr~LlVlDdv 300 (946)
.... ...+.-.+.+++ .++..||++|++
T Consensus 479 ~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 479 RPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 1111 112222334444 578999999998
No 479
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.88 E-value=0.53 Score=49.23 Aligned_cols=90 Identities=12% Similarity=0.107 Sum_probs=46.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF-DVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLS 289 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 289 (946)
..+++++|.+|+||||+++.+.... ...=..+.+++..... ....-++...+.++.+.. ...+...+...+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE-ecCCHHHHHHHHHHHHh
Confidence 4699999999999999999887632 1111234555544221 122222222222221111 12344445444443322
Q ss_pred -CceEEEEEcCCCCC
Q 043855 290 -GKKFLFVLDDVWNE 303 (946)
Q Consensus 290 -~kr~LlVlDdv~~~ 303 (946)
++.=++++|..-..
T Consensus 152 ~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 152 EARVDYILIDTAGKN 166 (270)
T ss_pred cCCCCEEEEECCCCC
Confidence 24567888988554
No 480
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.85 E-value=0.19 Score=50.07 Aligned_cols=41 Identities=27% Similarity=0.265 Sum_probs=28.1
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccC--------CceEEEEeCCC
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHF--------DLKAWTCVSDD 252 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~~~~ 252 (946)
.++.|+|++|+||||++..+..+.-....| ..+.|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 588899999999999999998754322222 25778777665
No 481
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=92.85 E-value=0.22 Score=57.45 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=37.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+++|....+.++.+.+..-. ....-|.|.|..|+||+++|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 358999998888888775432 12357889999999999999999974
No 482
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.85 E-value=0.093 Score=50.25 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.4
Q ss_pred cEEEEEEecCCChHHHHHHHHhccc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDD 235 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (946)
...+.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999853
No 483
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.84 E-value=0.073 Score=51.42 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=18.4
Q ss_pred EEEEecCCChHHHHHHHHhcc
Q 043855 214 LPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 214 i~I~G~~GiGKTtLa~~v~~~ 234 (946)
|.|.|.+|+|||||++.++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 484
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.83 E-value=0.55 Score=48.77 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=37.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSF 266 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 266 (946)
...++.|.|.+|+|||+++.+++.+.-... =..++|++... +..++...++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~~~~ 65 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLLASE 65 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHHHHh
Confidence 447999999999999999999876432221 23567777665 5667777666543
No 485
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.77 E-value=0.3 Score=47.66 Aligned_cols=119 Identities=18% Similarity=0.084 Sum_probs=59.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEe---CCCCCHHHHHHHH--HHH--hcCC----CCCCcccH--
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCV---SDDFDVVRLIKVI--LRS--FVAD----PNVDNRDL-- 277 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~---~~~~~~~~~~~~i--l~~--l~~~----~~~~~~~~-- 277 (946)
...|-|+|..|-||||.|..+.-. ...+=-.+..|-. .....-...+..+ +.- .+.. ......+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~r--a~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALR--AVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHH--HHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 468889999999999999877752 2111111221221 1122333333221 000 0000 00011111
Q ss_pred -HHHHHHHHHHhCCc-eEEEEEcCCCC---CChhhHhhhhccCCCCCCCcEEEEEcCCh
Q 043855 278 -ILLQLQLKKQLSGK-KFLFVLDDVWN---ESYNDWVELSHPFEAGAPGSKIIVTTRNQ 331 (946)
Q Consensus 278 -~~~~~~l~~~l~~k-r~LlVlDdv~~---~~~~~w~~~~~~l~~~~~gs~iivTtR~~ 331 (946)
...-...++.+... -=|||||.+-. ...-..+++...+.....+.-||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11223344555444 45999999832 12233455666665555677899999985
No 486
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.76 E-value=0.32 Score=55.17 Aligned_cols=41 Identities=24% Similarity=0.107 Sum_probs=30.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD 252 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 252 (946)
...++.|.|.+|+|||||+.+++.... ..-..++|++..+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees 119 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES 119 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc
Confidence 457999999999999999999987422 22235678776553
No 487
>PF13245 AAA_19: Part of AAA domain
Probab=92.75 E-value=0.15 Score=41.73 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=16.7
Q ss_pred EEEEEEecCCChHHH-HHHHHhc
Q 043855 212 SVLPIVGMGGLGKTT-LAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTt-La~~v~~ 233 (946)
+++.|.|++|.|||+ +++.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 678889999999995 4444444
No 488
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.75 E-value=0.07 Score=29.40 Aligned_cols=10 Identities=50% Similarity=0.594 Sum_probs=3.0
Q ss_pred CcEEeccCCC
Q 043855 618 LRYLNLSRTL 627 (946)
Q Consensus 618 Lr~L~Ls~~~ 627 (946)
|+.|+|++|.
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 489
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.74 E-value=0.39 Score=54.58 Aligned_cols=42 Identities=21% Similarity=0.090 Sum_probs=30.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD 252 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 252 (946)
....++.|.|.+|+|||||+.++..... ..-..++||+..+.
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EEs 133 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEES 133 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcCC
Confidence 3558999999999999999999976422 21135678776543
No 490
>PRK14530 adenylate kinase; Provisional
Probab=92.73 E-value=0.076 Score=54.04 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+.|.|+|++|+||||+|+.++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999873
No 491
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.71 E-value=0.11 Score=49.12 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+..||.+.|.+|.||||+|.+++.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHH
Confidence 3568999999999999999999997
No 492
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.67 E-value=0.28 Score=54.82 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=49.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCccc-HH-----
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPN-----VDNRD-LI----- 278 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~-~~----- 278 (946)
+...++|.|..|+|||||++.++...... ..+++..-.+...+.++...+...-..... ..... ..
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 45788999999999999999998743221 234444333444455555544433111100 00110 11
Q ss_pred HHHHHHHHHh--CCceEEEEEcCCC
Q 043855 279 LLQLQLKKQL--SGKKFLFVLDDVW 301 (946)
Q Consensus 279 ~~~~~l~~~l--~~kr~LlVlDdv~ 301 (946)
.....+.+++ +++..|+++||+-
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchh
Confidence 1112233444 4789999999983
No 493
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.67 E-value=0.096 Score=52.07 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+|.|.|.+|+||||+|+.++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999984
No 494
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=92.67 E-value=0.25 Score=50.82 Aligned_cols=51 Identities=24% Similarity=0.323 Sum_probs=38.6
Q ss_pred cccccchhHHHHHHHHHhcCC-CCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDD-LMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~-~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..++|-.-.++.|+..+.+-- .+...++=|++.+|.+|+||.-.++.++++
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n 133 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAEN 133 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHH
Confidence 347787777777777665421 123467889999999999999999999885
No 495
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.65 E-value=0.38 Score=52.23 Aligned_cols=89 Identities=19% Similarity=0.089 Sum_probs=45.7
Q ss_pred CcEEEEEEecCCChHHH-HHHHHhccccccccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTT-LAQLVYNDDRVRDHFDLKAWTCVSDDF-DVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQ 287 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 287 (946)
+.+||.+||+.|+|||| ||+..+.- .....=..++.++....- ...+-++.-.+-++.+-. ...+..++...+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-vv~~~~el~~ai~~- 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE-VVYSPKELAEAIEA- 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-EecCHHHHHHHHHH-
Confidence 36899999999999987 56555542 111222345666654321 222223333333333322 34455555555543
Q ss_pred hCCceEEEEEcCCCC
Q 043855 288 LSGKKFLFVLDDVWN 302 (946)
Q Consensus 288 l~~kr~LlVlDdv~~ 302 (946)
+++. =+|.+|-+..
T Consensus 279 l~~~-d~ILVDTaGr 292 (407)
T COG1419 279 LRDC-DVILVDTAGR 292 (407)
T ss_pred hhcC-CEEEEeCCCC
Confidence 2333 3555676644
No 496
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=92.64 E-value=0.17 Score=50.87 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHh
Q 043855 212 SVLPIVGMGGLGKTTLAQLVY 232 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~ 232 (946)
+++.|.|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999988
No 497
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=92.64 E-value=0.26 Score=56.91 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=37.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+++|....++++.+.+..-. ....-|.|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 348999998888888775432 12357889999999999999999974
No 498
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=92.61 E-value=0.72 Score=55.68 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCC
Q 043855 190 EIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVAD 269 (946)
Q Consensus 190 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~ 269 (946)
...+++|.+.+.. ..|+.|+|..|.||||-.-+++.+.-. .....+-++-.+..-...+...+.++++..
T Consensus 52 ~~~~~~i~~ai~~--------~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~ 121 (845)
T COG1643 52 TAVRDEILKAIEQ--------NQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEK 121 (845)
T ss_pred HHHHHHHHHHHHh--------CCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCC
Confidence 3567788888843 479999999999999988777764322 222344444455555677788888888765
Q ss_pred CCC------------------CcccHHHHHHHHH-HHhCCceEEEEEcCCCCCChhhHhh---hhccCCCCCCCcEEEEE
Q 043855 270 PNV------------------DNRDLILLQLQLK-KQLSGKKFLFVLDDVWNESYNDWVE---LSHPFEAGAPGSKIIVT 327 (946)
Q Consensus 270 ~~~------------------~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~w~~---~~~~l~~~~~gs~iivT 327 (946)
... .-.....+..+++ +.+-.+=-.||+|.+.+.+...-.. +...+......-||||+
T Consensus 122 ~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 122 LGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred cCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 331 0112233333333 2223344589999998765322111 11112222224799998
Q ss_pred cCCh---hHHHhhCCCCcEeC
Q 043855 328 TRNQ---GVAAIMGTVPAYQL 345 (946)
Q Consensus 328 tR~~---~v~~~~~~~~~~~l 345 (946)
|=.- ..+..++...++++
T Consensus 202 SATld~~rfs~~f~~apvi~i 222 (845)
T COG1643 202 SATLDAERFSAYFGNAPVIEI 222 (845)
T ss_pred ecccCHHHHHHHcCCCCEEEe
Confidence 8654 34455554333333
No 499
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.58 E-value=0.12 Score=52.19 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+.+.|+|++|+|||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45688999999999999999999763
No 500
>PRK14527 adenylate kinase; Provisional
Probab=92.55 E-value=0.096 Score=52.17 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+|.|+|++|+||||+|+.++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
Done!