Query 043855
Match_columns 946
No_of_seqs 724 out of 4908
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 15:22:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.5E-49 5E-54 464.3 25.0 317 187-526 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 4.6E-40 1.6E-44 384.7 19.3 287 185-518 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 4.8E-38 1.6E-42 408.5 24.6 311 182-524 122-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.6E-34 5.5E-39 343.2 22.6 305 183-521 123-449 (591)
5 4eco_A Uncharacterized protein 99.9 4E-27 1.4E-31 280.9 15.0 330 585-946 198-585 (636)
6 4ecn_A Leucine-rich repeat pro 99.9 2.9E-26 1E-30 277.4 22.4 328 585-945 440-824 (876)
7 3rgz_A Protein brassinosteroid 99.9 5.9E-27 2E-31 286.1 15.8 353 562-945 293-723 (768)
8 4ecn_A Leucine-rich repeat pro 99.9 2.1E-26 7.2E-31 278.7 17.9 314 603-945 435-801 (876)
9 3vq2_A TLR4, TOLL-like recepto 99.9 5.8E-26 2E-30 271.1 19.8 379 536-945 30-539 (606)
10 3rgz_A Protein brassinosteroid 99.9 2.1E-26 7.1E-31 281.3 16.2 335 585-945 285-699 (768)
11 4eco_A Uncharacterized protein 99.9 7.8E-26 2.7E-30 269.7 19.8 339 558-938 201-599 (636)
12 1o6v_A Internalin A; bacterial 99.9 2.6E-24 8.9E-29 247.4 22.4 343 538-943 46-391 (466)
13 3vq2_A TLR4, TOLL-like recepto 99.9 6.1E-24 2.1E-28 253.6 25.8 128 563-698 32-164 (606)
14 3t6q_A CD180 antigen; protein- 99.9 3.9E-24 1.3E-28 255.3 22.6 367 536-937 31-460 (606)
15 1o6v_A Internalin A; bacterial 99.9 6.3E-24 2.2E-28 244.2 23.5 319 561-937 44-364 (466)
16 2z7x_B TOLL-like receptor 1, v 99.9 7.1E-24 2.4E-28 247.9 23.3 124 563-698 21-149 (520)
17 3bz5_A Internalin-J, INLJ; leu 99.9 6.2E-24 2.1E-28 242.1 21.7 299 557-915 36-349 (457)
18 2z63_A TOLL-like receptor 4, v 99.9 2.3E-24 8E-29 255.4 17.7 145 536-689 26-175 (570)
19 2z81_A CD282 antigen, TOLL-lik 99.9 2E-24 6.7E-29 254.7 16.5 367 537-943 25-514 (549)
20 1ziw_A TOLL-like receptor 3; i 99.9 2.2E-23 7.5E-28 252.3 25.6 154 536-697 23-181 (680)
21 3t6q_A CD180 antigen; protein- 99.9 1.3E-23 4.4E-28 250.8 23.0 110 558-674 76-190 (606)
22 4fmz_A Internalin; leucine ric 99.9 1.2E-23 4E-28 232.4 20.1 301 559-937 40-344 (347)
23 4fmz_A Internalin; leucine ric 99.9 1.3E-23 4.3E-28 232.2 20.0 301 537-916 43-344 (347)
24 2z81_A CD282 antigen, TOLL-lik 99.9 9.2E-24 3.1E-28 248.9 18.9 325 563-915 26-441 (549)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-23 5.7E-28 246.9 20.9 123 563-697 52-179 (562)
26 2z7x_B TOLL-like receptor 1, v 99.9 2E-23 6.9E-28 244.1 20.9 138 536-685 19-162 (520)
27 2z63_A TOLL-like receptor 4, v 99.9 1.7E-23 5.9E-28 247.9 19.4 371 538-943 52-535 (570)
28 3o6n_A APL1; leucine-rich repe 99.9 2.1E-23 7.3E-28 234.2 18.8 301 561-916 43-350 (390)
29 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-22 3.8E-27 251.1 26.6 361 536-936 22-461 (844)
30 3bz5_A Internalin-J, INLJ; leu 99.9 8.4E-23 2.9E-27 232.8 22.2 95 591-694 40-134 (457)
31 3v47_A TOLL-like receptor 5B a 99.9 1.3E-22 4.4E-27 233.1 23.1 352 563-943 30-412 (455)
32 3oja_B Anopheles plasmodium-re 99.9 7.4E-23 2.5E-27 242.7 18.7 301 561-916 49-356 (597)
33 3j0a_A TOLL-like receptor 5; m 99.9 1E-21 3.4E-26 242.5 26.6 351 561-942 22-416 (844)
34 3o6n_A APL1; leucine-rich repe 99.9 1.5E-22 5.1E-27 227.3 17.4 301 591-937 43-350 (390)
35 3v47_A TOLL-like receptor 5B a 99.9 2.7E-22 9.3E-27 230.4 18.8 352 536-916 28-406 (455)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.4E-22 2.5E-26 232.8 22.4 128 536-675 50-181 (562)
37 2id5_A Lingo-1, leucine rich r 99.9 1.1E-21 3.9E-26 226.5 23.4 290 593-916 32-331 (477)
38 1ziw_A TOLL-like receptor 3; i 99.9 9.5E-22 3.2E-26 237.9 23.7 129 563-698 25-156 (680)
39 3oja_B Anopheles plasmodium-re 99.9 3.8E-22 1.3E-26 236.5 17.6 301 591-937 49-356 (597)
40 2id5_A Lingo-1, leucine rich r 99.9 1.9E-21 6.3E-26 224.7 22.8 295 563-894 32-331 (477)
41 4fcg_A Uncharacterized protein 99.9 4E-22 1.4E-26 217.2 16.2 191 591-841 79-270 (328)
42 1jl5_A Outer protein YOPM; leu 99.9 1.1E-20 3.8E-25 215.0 22.3 62 882-945 336-417 (454)
43 1xku_A Decorin; proteoglycan, 99.9 1.5E-20 5E-25 205.8 20.7 280 594-936 32-329 (330)
44 2ft3_A Biglycan; proteoglycan, 99.9 8.4E-21 2.9E-25 207.8 18.1 280 594-937 34-331 (332)
45 1jl5_A Outer protein YOPM; leu 99.8 5.5E-21 1.9E-25 217.6 16.6 330 539-944 12-354 (454)
46 1ogq_A PGIP-2, polygalacturona 99.8 1.6E-21 5.6E-26 211.1 8.6 246 564-866 51-303 (313)
47 4fcg_A Uncharacterized protein 99.8 4.6E-20 1.6E-24 200.9 17.1 228 614-913 79-309 (328)
48 4g8a_A TOLL-like receptor 4; l 99.8 6E-20 2E-24 220.6 18.6 135 535-679 49-188 (635)
49 3g06_A SSPH2 (leucine-rich rep 99.8 1.5E-19 5E-24 212.0 20.1 256 592-938 39-296 (622)
50 1ogq_A PGIP-2, polygalacturona 99.8 1.3E-20 4.3E-25 204.1 8.5 250 593-898 50-306 (313)
51 2ft3_A Biglycan; proteoglycan, 99.8 1.7E-19 5.7E-24 197.5 17.3 215 593-834 54-274 (332)
52 1xku_A Decorin; proteoglycan, 99.8 3.5E-19 1.2E-23 194.8 18.6 216 593-834 52-273 (330)
53 4g8a_A TOLL-like receptor 4; l 99.8 1.7E-18 5.9E-23 207.8 25.1 126 563-697 52-183 (635)
54 3g06_A SSPH2 (leucine-rich rep 99.8 9.6E-18 3.3E-22 196.6 20.6 234 593-893 61-294 (622)
55 1z7x_W Ribonuclease inhibitor; 99.8 2.5E-21 8.4E-26 222.8 -9.8 381 538-937 3-438 (461)
56 2z66_A Variable lymphocyte rec 99.8 1.4E-18 4.8E-23 187.9 12.2 98 593-692 28-131 (306)
57 2z80_A TOLL-like receptor 2, v 99.8 2.6E-18 9.1E-23 189.7 14.0 250 593-897 52-314 (353)
58 2z80_A TOLL-like receptor 2, v 99.8 2.5E-18 8.7E-23 189.8 13.2 127 563-697 52-184 (353)
59 2z66_A Variable lymphocyte rec 99.7 4.1E-18 1.4E-22 184.1 12.4 223 563-835 28-259 (306)
60 3zyi_A Leucine-rich repeat-con 99.7 1.3E-17 4.5E-22 190.6 16.8 220 593-864 75-300 (452)
61 3ogk_B Coronatine-insensitive 99.7 2.7E-19 9.2E-24 212.8 2.0 345 564-940 139-526 (592)
62 3zyj_A Leucine-rich repeat-con 99.7 2.3E-17 7.7E-22 188.0 17.7 220 593-864 64-289 (440)
63 1z7x_W Ribonuclease inhibitor; 99.7 2.6E-20 9E-25 214.2 -6.9 84 591-674 26-124 (461)
64 3zyi_A Leucine-rich repeat-con 99.7 1.2E-17 4.2E-22 190.9 15.0 221 563-835 75-301 (452)
65 3o53_A Protein LRIM1, AGAP0063 99.7 1.9E-18 6.4E-23 187.6 7.2 270 585-918 25-299 (317)
66 3zyj_A Leucine-rich repeat-con 99.7 2E-17 6.8E-22 188.4 15.4 221 563-835 64-290 (440)
67 3ogk_B Coronatine-insensitive 99.7 4.4E-19 1.5E-23 211.0 -0.3 346 561-937 110-499 (592)
68 3o53_A Protein LRIM1, AGAP0063 99.7 8.8E-19 3E-23 190.2 0.8 260 593-919 10-276 (317)
69 1ozn_A Reticulon 4 receptor; N 99.7 1.8E-17 6.3E-22 177.0 10.3 201 592-836 31-237 (285)
70 2p1m_B Transport inhibitor res 99.7 9.8E-19 3.4E-23 208.1 -2.8 370 538-938 105-518 (594)
71 1wwl_A Monocyte differentiatio 99.7 2.5E-18 8.4E-23 186.2 0.4 96 595-692 65-178 (312)
72 3oja_A Leucine-rich immune mol 99.7 2.1E-17 7.3E-22 189.9 8.2 215 591-865 32-248 (487)
73 1wwl_A Monocyte differentiatio 99.7 3.5E-18 1.2E-22 185.0 1.5 202 591-835 93-307 (312)
74 1ozn_A Reticulon 4 receptor; N 99.7 1.7E-16 5.8E-21 169.5 14.6 218 596-865 14-236 (285)
75 1h6u_A Internalin H; cell adhe 99.7 1.7E-16 5.7E-21 171.1 12.4 195 591-841 39-233 (308)
76 1w5s_A Origin recognition comp 99.7 7.5E-16 2.6E-20 174.0 17.9 312 184-513 22-387 (412)
77 1p9a_G Platelet glycoprotein I 99.7 7.4E-16 2.5E-20 164.3 15.5 199 590-835 7-206 (290)
78 3qfl_A MLA10; coiled-coil, (CC 99.7 1.2E-16 4.1E-21 141.7 7.8 79 12-90 2-82 (115)
79 3oja_A Leucine-rich immune mol 99.6 3.6E-17 1.2E-21 188.0 4.5 241 607-913 21-270 (487)
80 2o6q_A Variable lymphocyte rec 99.6 1.6E-15 5.6E-20 160.3 16.4 195 594-835 17-216 (270)
81 2qen_A Walker-type ATPase; unk 99.6 5.2E-15 1.8E-19 163.2 20.7 292 182-517 10-348 (350)
82 2ast_B S-phase kinase-associat 99.6 1.3E-17 4.5E-22 182.9 -0.9 82 593-674 70-153 (336)
83 2p1m_B Transport inhibitor res 99.6 1.3E-17 4.3E-22 198.5 -2.1 373 538-936 130-541 (594)
84 4ay9_X Follicle-stimulating ho 99.6 3.5E-15 1.2E-19 164.2 16.5 237 596-892 12-255 (350)
85 2z62_A TOLL-like receptor 4, v 99.6 2.2E-15 7.6E-20 159.9 14.1 202 593-835 28-235 (276)
86 2xwt_C Thyrotropin receptor; s 99.6 9.2E-16 3.2E-20 159.0 10.7 175 594-834 32-215 (239)
87 2z62_A TOLL-like receptor 4, v 99.6 2.7E-15 9.1E-20 159.3 13.9 217 597-865 11-235 (276)
88 2xwt_C Thyrotropin receptor; s 99.6 2.9E-15 1E-19 155.2 13.7 73 604-680 22-97 (239)
89 3rfs_A Internalin B, repeat mo 99.6 8.2E-16 2.8E-20 162.7 9.6 175 591-834 39-215 (272)
90 4glp_A Monocyte differentiatio 99.6 3E-15 1E-19 161.8 12.8 202 591-835 89-305 (310)
91 3rfs_A Internalin B, repeat mo 99.6 2.7E-15 9.3E-20 158.7 12.0 202 558-842 36-240 (272)
92 1h6u_A Internalin H; cell adhe 99.6 3.5E-15 1.2E-19 160.8 12.7 194 559-814 37-230 (308)
93 2fna_A Conserved hypothetical 99.6 6E-14 2E-18 155.1 21.9 291 182-516 11-355 (357)
94 4ay9_X Follicle-stimulating ho 99.6 3.8E-14 1.3E-18 155.8 19.0 245 612-914 6-255 (350)
95 2o6q_A Variable lymphocyte rec 99.6 2.8E-14 9.5E-19 150.8 16.2 198 616-865 16-216 (270)
96 2ca6_A RAN GTPase-activating p 99.6 9.6E-17 3.3E-21 179.5 -3.4 93 736-835 211-314 (386)
97 1p9a_G Platelet glycoprotein I 99.6 3.1E-14 1.1E-18 151.7 15.5 199 612-865 6-206 (290)
98 1h6t_A Internalin B; cell adhe 99.5 1.6E-14 5.4E-19 154.2 12.5 98 590-693 43-140 (291)
99 2ca6_A RAN GTPase-activating p 99.5 8.3E-16 2.8E-20 171.9 0.1 260 557-832 26-338 (386)
100 2ast_B S-phase kinase-associat 99.5 1.2E-15 4.1E-20 167.2 0.9 125 563-694 70-202 (336)
101 3m19_A Variable lymphocyte rec 99.5 1.2E-13 4.2E-18 144.0 16.0 97 593-693 14-113 (251)
102 1m9s_A Internalin B; cell inva 99.5 4.4E-14 1.5E-18 165.4 11.4 171 590-814 40-210 (605)
103 3cvr_A Invasion plasmid antige 99.5 8.2E-14 2.8E-18 161.1 11.3 180 592-839 58-245 (571)
104 2qby_B CDC6 homolog 3, cell di 99.5 2E-12 6.9E-17 144.3 20.9 295 184-500 20-339 (384)
105 1xeu_A Internalin C; cellular 99.4 5.2E-14 1.8E-18 147.6 6.0 85 591-680 17-101 (263)
106 2v1u_A Cell division control p 99.4 4.5E-12 1.5E-16 141.7 21.6 294 184-500 19-351 (387)
107 1h6t_A Internalin B; cell adhe 99.4 3.5E-13 1.2E-17 143.7 11.3 121 559-693 42-162 (291)
108 1fnn_A CDC6P, cell division co 99.4 1.1E-11 3.7E-16 138.6 23.8 298 184-501 17-352 (389)
109 1m9s_A Internalin B; cell inva 99.4 4.6E-13 1.6E-17 156.8 12.0 178 559-795 39-216 (605)
110 4ezg_A Putative uncharacterize 99.4 3.4E-13 1.1E-17 134.9 9.3 100 591-692 42-141 (197)
111 4glp_A Monocyte differentiatio 99.4 9E-13 3.1E-17 142.2 13.2 203 561-814 89-307 (310)
112 3goz_A Leucine-rich repeat-con 99.4 3.1E-14 1.1E-18 157.4 0.7 110 585-695 14-146 (362)
113 3cvr_A Invasion plasmid antige 99.4 6.4E-13 2.2E-17 153.7 9.8 187 564-818 60-247 (571)
114 3m19_A Variable lymphocyte rec 99.4 4.8E-12 1.6E-16 131.9 15.3 173 616-835 14-190 (251)
115 3goz_A Leucine-rich repeat-con 99.4 6.8E-14 2.3E-18 154.6 1.0 232 561-835 20-295 (362)
116 2qby_A CDC6 homolog 1, cell di 99.3 1.7E-11 5.7E-16 136.9 17.9 297 183-500 19-348 (386)
117 1xeu_A Internalin C; cellular 99.3 1.4E-12 4.8E-17 136.7 8.3 100 588-694 36-135 (263)
118 2v9t_B SLIT homolog 2 protein 99.3 6.6E-12 2.3E-16 127.7 12.4 93 596-692 14-109 (220)
119 2o6s_A Variable lymphocyte rec 99.3 5.6E-12 1.9E-16 127.2 11.5 93 596-692 10-105 (208)
120 4ezg_A Putative uncharacterize 99.3 4.1E-12 1.4E-16 126.9 10.4 126 560-695 41-167 (197)
121 1dce_A Protein (RAB geranylger 99.3 1.8E-14 6.3E-19 167.6 -8.7 206 613-861 346-567 (567)
122 3e6j_A Variable lymphocyte rec 99.3 1.7E-11 5.7E-16 125.7 14.1 83 595-681 21-105 (229)
123 2je0_A Acidic leucine-rich nuc 99.3 2.2E-12 7.6E-17 122.5 6.9 124 562-694 16-147 (149)
124 2ell_A Acidic leucine-rich nuc 99.3 3.6E-12 1.2E-16 123.8 8.4 128 562-698 23-158 (168)
125 2v70_A SLIT-2, SLIT homolog 2 99.3 1.1E-11 3.9E-16 126.0 11.2 93 596-692 14-110 (220)
126 2xot_A Amphoterin-induced prot 99.3 5.3E-12 1.8E-16 139.2 9.4 95 596-694 21-119 (361)
127 1a9n_A U2A', U2A'; complex (nu 99.3 5.7E-12 2E-16 123.3 7.9 128 559-697 15-150 (176)
128 1njg_A DNA polymerase III subu 99.3 8.1E-11 2.8E-15 122.1 16.8 199 184-398 23-231 (250)
129 2o6s_A Variable lymphocyte rec 99.2 9E-12 3.1E-16 125.7 8.7 99 592-692 27-129 (208)
130 3e6j_A Variable lymphocyte rec 99.2 1.7E-11 5.6E-16 125.7 9.5 127 563-697 40-169 (229)
131 2je0_A Acidic leucine-rich nuc 99.2 1.1E-11 3.8E-16 117.6 6.2 104 591-697 15-123 (149)
132 2v9t_B SLIT homolog 2 protein 99.2 2.7E-11 9.2E-16 123.2 9.1 127 563-697 32-162 (220)
133 2ell_A Acidic leucine-rich nuc 99.2 4.7E-11 1.6E-15 115.8 8.8 137 536-682 22-165 (168)
134 2chg_A Replication factor C sm 99.1 6.8E-10 2.3E-14 113.2 16.2 187 184-396 17-205 (226)
135 2v70_A SLIT-2, SLIT homolog 2 99.1 6.5E-11 2.2E-15 120.3 8.4 126 564-697 33-163 (220)
136 4b8c_D Glucose-repressible alc 99.1 4.6E-11 1.6E-15 143.6 8.4 103 591-695 222-324 (727)
137 4b8c_D Glucose-repressible alc 99.1 1E-11 3.5E-16 149.3 2.2 118 559-684 220-337 (727)
138 1dce_A Protein (RAB geranylger 99.1 9.1E-11 3.1E-15 136.5 8.7 84 589-674 459-544 (567)
139 1a9n_A U2A', U2A'; complex (nu 99.1 8.2E-11 2.8E-15 115.1 6.6 104 589-696 15-122 (176)
140 2wfh_A SLIT homolog 2 protein 99.1 2.5E-10 8.7E-15 113.2 8.7 103 593-697 31-136 (193)
141 3sb4_A Hypothetical leucine ri 99.1 3.5E-10 1.2E-14 122.9 10.4 118 562-692 24-153 (329)
142 1hqc_A RUVB; extended AAA-ATPa 99.0 9.7E-10 3.3E-14 119.2 13.1 268 184-499 12-324 (324)
143 1w8a_A SLIT protein; signaling 99.0 6.3E-10 2.1E-14 110.3 8.4 103 594-697 30-136 (192)
144 2xot_A Amphoterin-induced prot 99.0 5.9E-10 2E-14 122.8 8.8 102 591-694 62-170 (361)
145 2r9u_A Variable lymphocyte rec 99.0 9.1E-10 3.1E-14 107.1 8.7 95 596-694 15-112 (174)
146 3g39_A Variable lymphocyte rec 99.0 1.1E-09 3.6E-14 106.2 8.4 99 595-697 11-112 (170)
147 1w8a_A SLIT protein; signaling 98.9 1.8E-09 6.2E-14 107.0 9.9 126 596-755 11-140 (192)
148 2wfh_A SLIT homolog 2 protein 98.9 3E-09 1E-13 105.4 11.1 97 596-696 13-111 (193)
149 1sxj_B Activator 1 37 kDa subu 98.9 5E-09 1.7E-13 113.5 13.4 186 184-396 21-211 (323)
150 1ds9_A Outer arm dynein; leuci 98.9 1E-11 3.4E-16 124.2 -7.5 103 588-694 43-147 (198)
151 1ds9_A Outer arm dynein; leuci 98.9 2.2E-11 7.5E-16 121.7 -6.6 99 594-696 24-124 (198)
152 2r9u_A Variable lymphocyte rec 98.9 2.2E-09 7.6E-14 104.3 7.5 90 593-684 33-125 (174)
153 2o6r_A Variable lymphocyte rec 98.9 4.4E-09 1.5E-13 102.7 9.3 103 593-697 28-134 (177)
154 3sb4_A Hypothetical leucine ri 98.8 1.3E-09 4.4E-14 118.4 4.0 283 591-911 23-327 (329)
155 2o6r_A Variable lymphocyte rec 98.8 6.3E-09 2.2E-13 101.6 8.4 106 562-675 27-136 (177)
156 3g39_A Variable lymphocyte rec 98.8 1.1E-08 3.9E-13 98.9 8.5 81 593-674 30-113 (170)
157 1iqp_A RFCS; clamp loader, ext 98.7 3.8E-08 1.3E-12 106.8 12.1 187 184-397 25-214 (327)
158 3te6_A Regulatory protein SIR3 98.7 8.4E-08 2.9E-12 101.2 13.7 209 184-398 20-283 (318)
159 1jr3_A DNA polymerase III subu 98.7 1.8E-07 6.1E-12 103.5 15.5 197 184-396 16-222 (373)
160 2ifg_A High affinity nerve gro 98.6 3.5E-08 1.2E-12 108.0 8.2 93 599-694 14-110 (347)
161 2chq_A Replication factor C sm 98.6 3.2E-07 1.1E-11 98.9 14.4 182 184-395 17-204 (319)
162 4fdw_A Leucine rich hypothetic 98.5 6.6E-06 2.3E-10 91.1 21.1 120 776-913 248-378 (401)
163 4fdw_A Leucine rich hypothetic 98.4 3.3E-06 1.1E-10 93.5 17.5 210 594-864 136-355 (401)
164 2ifg_A High affinity nerve gro 98.4 2.1E-07 7.3E-12 101.7 7.6 88 585-674 24-114 (347)
165 3un9_A NLR family member X1; l 98.4 8E-08 2.7E-12 105.5 2.5 34 616-649 101-136 (372)
166 3pfi_A Holliday junction ATP-d 98.4 8E-06 2.7E-10 88.7 18.1 178 184-395 29-227 (338)
167 4fs7_A Uncharacterized protein 98.4 1.9E-05 6.5E-10 87.7 21.4 140 772-931 249-393 (394)
168 1jbk_A CLPB protein; beta barr 98.4 7.9E-07 2.7E-11 87.8 8.8 45 184-234 22-66 (195)
169 1sxj_D Activator 1 41 kDa subu 98.3 2.4E-06 8.3E-11 93.5 12.9 196 184-395 37-235 (353)
170 3bos_A Putative DNA replicatio 98.3 6.8E-07 2.3E-11 92.0 6.7 174 185-396 29-218 (242)
171 1a5t_A Delta prime, HOLB; zinc 98.3 1.3E-05 4.6E-10 86.4 16.9 174 190-396 8-206 (334)
172 3pvs_A Replication-associated 98.2 5.6E-06 1.9E-10 92.5 13.2 179 184-395 26-215 (447)
173 3uk6_A RUVB-like 2; hexameric 98.2 3E-05 1E-09 85.2 17.0 199 184-394 44-302 (368)
174 3h4m_A Proteasome-activating n 98.2 6.9E-06 2.3E-10 86.8 11.3 185 183-393 16-229 (285)
175 1sxj_E Activator 1 40 kDa subu 98.2 8.3E-06 2.9E-10 89.2 12.1 198 184-396 14-238 (354)
176 3u61_B DNA polymerase accessor 98.1 8.7E-06 3E-10 87.8 11.7 175 184-392 26-213 (324)
177 2z4s_A Chromosomal replication 98.1 1E-05 3.5E-10 90.6 12.4 161 211-393 130-304 (440)
178 3un9_A NLR family member X1; l 98.1 1.7E-06 5.9E-11 94.9 4.1 83 591-674 124-222 (372)
179 2ra8_A Uncharacterized protein 98.1 1.2E-06 4.1E-11 95.2 2.9 15 589-603 135-149 (362)
180 2qz4_A Paraplegin; AAA+, SPG7, 98.0 1.4E-05 4.7E-10 83.3 10.6 187 184-394 6-221 (262)
181 1d2n_A N-ethylmaleimide-sensit 98.0 5.9E-05 2E-09 78.9 15.4 171 185-387 34-229 (272)
182 3syl_A Protein CBBX; photosynt 98.0 2.4E-05 8.1E-10 83.7 12.4 161 185-362 32-218 (309)
183 1sxj_A Activator 1 95 kDa subu 98.0 1.8E-05 6.2E-10 90.8 12.1 198 184-396 39-254 (516)
184 4fs7_A Uncharacterized protein 98.0 0.00017 5.7E-09 80.0 19.5 141 775-935 229-375 (394)
185 1sxj_C Activator 1 40 kDa subu 98.0 4.7E-05 1.6E-09 82.5 14.3 182 184-392 25-209 (340)
186 3e4g_A ATP synthase subunit S, 98.0 2.2E-06 7.4E-11 81.5 2.7 92 801-897 61-153 (176)
187 2ra8_A Uncharacterized protein 98.0 4E-06 1.4E-10 91.1 5.2 14 559-572 135-148 (362)
188 3n70_A Transport activator; si 97.9 1.3E-05 4.5E-10 74.7 7.3 115 185-331 2-116 (145)
189 2p65_A Hypothetical protein PF 97.9 9E-06 3.1E-10 79.6 6.1 45 184-234 22-66 (187)
190 3e4g_A ATP synthase subunit S, 97.9 3.8E-06 1.3E-10 79.8 3.0 84 824-918 61-152 (176)
191 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00075 2.6E-08 72.1 19.7 187 184-396 12-224 (322)
192 1l8q_A Chromosomal replication 97.8 4.5E-05 1.5E-09 82.1 10.2 155 210-389 36-202 (324)
193 2qp9_X Vacuolar protein sortin 97.8 0.00012 4.2E-09 79.5 13.7 185 184-395 51-261 (355)
194 3eie_A Vacuolar protein sortin 97.8 0.00026 8.9E-09 75.9 15.5 185 184-395 18-228 (322)
195 4gt6_A Cell surface protein; l 97.8 0.00089 3E-08 74.1 20.3 121 799-935 263-387 (394)
196 2gno_A DNA polymerase III, gam 97.8 8.9E-05 3.1E-09 78.3 11.3 149 188-361 1-152 (305)
197 1io0_A Tropomodulin; LRR prote 97.8 1.8E-05 6E-10 77.4 5.5 84 591-674 63-162 (185)
198 1io0_A Tropomodulin; LRR prote 97.8 1.2E-05 4E-10 78.7 4.0 106 587-694 30-158 (185)
199 3rw6_A Nuclear RNA export fact 97.8 1.8E-05 6.2E-10 81.3 5.5 78 591-669 168-257 (267)
200 3pxg_A Negative regulator of g 97.7 8.7E-05 3E-09 83.9 11.1 145 184-361 180-338 (468)
201 3d8b_A Fidgetin-like protein 1 97.7 0.00036 1.2E-08 75.9 15.5 188 184-396 84-296 (357)
202 3rw6_A Nuclear RNA export fact 97.7 6.3E-06 2.2E-10 84.7 0.9 96 598-695 148-259 (267)
203 3ec2_A DNA replication protein 97.7 4E-05 1.4E-09 74.5 6.6 122 189-331 19-143 (180)
204 2w58_A DNAI, primosome compone 97.7 3E-05 1E-09 77.1 5.6 119 192-331 37-159 (202)
205 3b9p_A CG5977-PA, isoform A; A 97.7 0.00087 3E-08 70.9 16.6 184 184-394 21-232 (297)
206 2zan_A Vacuolar protein sortin 97.6 0.001 3.5E-08 74.5 17.2 188 184-395 134-345 (444)
207 1qvr_A CLPB protein; coiled co 97.6 8.5E-05 2.9E-09 90.8 8.8 155 184-360 170-344 (854)
208 3cf0_A Transitional endoplasmi 97.6 0.00096 3.3E-08 70.6 15.4 181 184-390 15-223 (301)
209 3co5_A Putative two-component 97.6 3.4E-05 1.1E-09 71.7 3.4 46 185-234 5-50 (143)
210 2bjv_A PSP operon transcriptio 97.5 0.00027 9.2E-09 73.5 9.9 46 185-234 7-52 (265)
211 1in4_A RUVB, holliday junction 97.5 0.0032 1.1E-07 67.6 18.7 178 184-395 25-223 (334)
212 1ojl_A Transcriptional regulat 97.5 0.00032 1.1E-08 74.3 10.4 47 184-234 2-48 (304)
213 4fcw_A Chaperone protein CLPB; 97.5 0.00031 1E-08 75.0 10.3 121 185-314 18-142 (311)
214 3vfd_A Spastin; ATPase, microt 97.5 0.0012 4.1E-08 72.7 14.8 187 184-395 115-326 (389)
215 2c9o_A RUVB-like 1; hexameric 97.4 0.00054 1.8E-08 77.2 11.7 99 293-396 297-411 (456)
216 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00093 3.2E-08 80.8 14.4 156 184-361 186-362 (758)
217 3hu3_A Transitional endoplasmi 97.4 0.00066 2.2E-08 76.6 11.5 185 184-394 204-414 (489)
218 3pxi_A Negative regulator of g 97.3 0.00063 2.1E-08 82.1 11.0 149 184-361 180-338 (758)
219 4b4t_J 26S protease regulatory 97.2 0.002 6.9E-08 69.5 12.9 179 184-388 148-354 (405)
220 1lv7_A FTSH; alpha/beta domain 97.2 0.0019 6.5E-08 66.6 11.8 183 184-392 12-222 (257)
221 4gt6_A Cell surface protein; l 97.2 0.0019 6.5E-08 71.4 12.5 285 589-913 83-386 (394)
222 3pxi_A Negative regulator of g 97.2 0.00029 1E-08 85.0 6.3 155 184-360 491-674 (758)
223 1ofh_A ATP-dependent HSL prote 97.2 0.00071 2.4E-08 72.0 8.7 51 184-234 15-73 (310)
224 2kjq_A DNAA-related protein; s 97.2 0.00015 5E-09 67.7 2.8 39 211-251 36-74 (149)
225 2r62_A Cell division protease 97.1 0.00019 6.4E-09 74.8 2.7 51 184-234 11-67 (268)
226 4h09_A Hypothetical leucine ri 97.1 0.013 4.5E-07 64.1 17.9 55 591-648 67-122 (379)
227 4b4t_L 26S protease subunit RP 97.0 0.003 1E-07 69.4 11.9 179 184-388 181-387 (437)
228 2ce7_A Cell division protein F 97.0 0.0034 1.2E-07 70.1 12.6 179 184-388 16-221 (476)
229 4b4t_K 26S protease regulatory 97.0 0.0025 8.7E-08 69.8 11.0 53 182-234 170-229 (428)
230 3m6a_A ATP-dependent protease 97.0 0.0015 5.2E-08 75.0 9.7 51 184-234 81-131 (543)
231 4h09_A Hypothetical leucine ri 97.0 0.032 1.1E-06 61.0 19.9 78 591-673 44-123 (379)
232 4b4t_H 26S protease regulatory 96.9 0.0088 3E-07 65.5 14.3 178 184-387 209-414 (467)
233 2cvh_A DNA repair and recombin 96.9 0.003 1E-07 63.2 10.0 87 210-302 19-116 (220)
234 2qgz_A Helicase loader, putati 96.7 0.00074 2.5E-08 71.5 3.8 56 190-249 134-189 (308)
235 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.00095 3.2E-08 69.5 3.7 69 211-302 123-193 (331)
236 2r44_A Uncharacterized protein 96.6 0.002 6.9E-08 69.2 6.3 152 184-362 27-199 (331)
237 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0031 1.1E-07 76.2 8.5 51 184-234 458-511 (758)
238 1qvr_A CLPB protein; coiled co 96.5 0.0043 1.5E-07 75.7 9.4 137 184-330 558-710 (854)
239 3t15_A Ribulose bisphosphate c 96.4 0.007 2.4E-07 63.5 8.4 26 209-234 34-59 (293)
240 1um8_A ATP-dependent CLP prote 96.2 0.0067 2.3E-07 66.4 7.8 24 211-234 72-95 (376)
241 3cf2_A TER ATPase, transitiona 96.1 0.027 9.4E-07 66.7 12.7 179 184-388 204-407 (806)
242 3hr8_A Protein RECA; alpha and 96.1 0.0099 3.4E-07 63.5 8.1 86 210-302 60-150 (356)
243 4b4t_I 26S protease regulatory 96.1 0.021 7.3E-07 61.8 10.4 178 184-387 182-387 (437)
244 1v5w_A DMC1, meiotic recombina 96.0 0.018 6.2E-07 61.8 9.6 57 210-267 121-181 (343)
245 2dhr_A FTSH; AAA+ protein, hex 96.0 0.022 7.7E-07 63.9 10.4 175 184-388 31-236 (499)
246 3io5_A Recombination and repai 96.0 0.018 6.2E-07 59.6 8.7 85 213-302 30-122 (333)
247 1n0w_A DNA repair protein RAD5 95.9 0.018 6.1E-07 58.5 8.9 91 210-301 23-129 (243)
248 1jr3_D DNA polymerase III, del 95.8 0.082 2.8E-06 56.8 13.9 158 210-394 17-184 (343)
249 2z43_A DNA repair and recombin 95.8 0.024 8.2E-07 60.4 9.4 90 210-300 106-212 (324)
250 1xp8_A RECA protein, recombina 95.7 0.021 7E-07 61.6 8.5 85 210-301 73-162 (366)
251 4b4t_M 26S protease regulatory 95.7 0.0056 1.9E-07 67.1 4.1 178 184-387 181-386 (434)
252 1ypw_A Transitional endoplasmi 95.7 0.034 1.2E-06 66.9 11.3 156 184-361 204-385 (806)
253 2b8t_A Thymidine kinase; deoxy 95.7 0.0047 1.6E-07 61.3 3.1 114 210-331 11-126 (223)
254 1rz3_A Hypothetical protein rb 95.7 0.011 3.9E-07 58.0 5.8 42 189-233 3-44 (201)
255 2x8a_A Nuclear valosin-contain 95.7 0.053 1.8E-06 56.0 11.1 156 184-361 10-191 (274)
256 2i1q_A DNA repair and recombin 95.6 0.023 7.8E-07 60.6 8.1 90 210-300 97-213 (322)
257 3rfe_A Platelet glycoprotein I 95.5 0.018 6.2E-07 51.8 6.1 53 596-650 11-66 (130)
258 2zr9_A Protein RECA, recombina 95.4 0.027 9.3E-07 60.4 8.0 86 210-302 60-150 (349)
259 1odf_A YGR205W, hypothetical 3 95.3 0.067 2.3E-06 55.6 10.4 82 209-290 29-117 (290)
260 1u94_A RECA protein, recombina 95.1 0.03 1E-06 60.0 7.2 85 210-301 62-151 (356)
261 1g5t_A COB(I)alamin adenosyltr 95.0 0.013 4.3E-07 56.4 3.4 114 212-331 29-163 (196)
262 4a74_A DNA repair and recombin 94.9 0.067 2.3E-06 53.6 8.9 47 210-256 24-74 (231)
263 3c8u_A Fructokinase; YP_612366 94.8 0.02 6.9E-07 56.6 4.5 39 192-234 7-45 (208)
264 1pzn_A RAD51, DNA repair and r 94.7 0.054 1.9E-06 58.1 8.0 92 210-302 130-242 (349)
265 2px0_A Flagellar biosynthesis 94.7 0.056 1.9E-06 56.5 7.8 87 210-300 104-191 (296)
266 3dm5_A SRP54, signal recogniti 94.7 0.24 8.3E-06 54.3 12.9 24 210-233 99-122 (443)
267 1zp6_A Hypothetical protein AT 94.6 0.02 6.9E-07 55.6 3.8 25 210-234 8-32 (191)
268 3bh0_A DNAB-like replicative h 94.5 0.1 3.5E-06 55.1 9.4 53 210-266 67-119 (315)
269 3nbx_X ATPase RAVA; AAA+ ATPas 94.4 0.025 8.6E-07 63.6 4.6 42 185-234 23-64 (500)
270 1qhx_A CPT, protein (chloramph 94.4 0.017 5.8E-07 55.4 2.8 22 212-233 4-25 (178)
271 3lw7_A Adenylate kinase relate 94.4 0.019 6.6E-07 54.8 3.0 20 212-231 2-21 (179)
272 1gvn_B Zeta; postsegregational 94.3 0.04 1.4E-06 57.4 5.4 40 193-233 16-55 (287)
273 1ly1_A Polynucleotide kinase; 94.3 0.023 7.7E-07 54.6 3.3 22 212-233 3-24 (181)
274 3kb2_A SPBC2 prophage-derived 94.2 0.022 7.4E-07 54.3 3.0 22 212-233 2-23 (173)
275 3lda_A DNA repair protein RAD5 94.2 0.093 3.2E-06 57.2 8.3 57 210-267 177-237 (400)
276 3vaa_A Shikimate kinase, SK; s 94.2 0.021 7.3E-07 55.9 3.0 23 211-233 25-47 (199)
277 3uie_A Adenylyl-sulfate kinase 94.2 0.029 9.8E-07 55.1 3.8 25 210-234 24-48 (200)
278 3tqc_A Pantothenate kinase; bi 94.1 0.044 1.5E-06 57.6 5.4 45 187-233 70-114 (321)
279 1kgd_A CASK, peripheral plasma 94.1 0.024 8.3E-07 54.5 3.2 24 211-234 5-28 (180)
280 3hws_A ATP-dependent CLP prote 94.1 0.036 1.2E-06 60.1 4.8 50 185-234 16-74 (363)
281 3rfe_A Platelet glycoprotein I 94.0 0.057 1.9E-06 48.5 5.2 53 619-674 11-66 (130)
282 3ice_A Transcription terminati 94.0 0.057 1.9E-06 57.4 5.8 53 195-253 163-216 (422)
283 2p5t_B PEZT; postsegregational 94.0 0.042 1.4E-06 56.2 4.8 41 192-233 14-54 (253)
284 2ga8_A Hypothetical 39.9 kDa p 93.9 0.054 1.8E-06 57.3 5.5 45 187-233 2-46 (359)
285 1sky_E F1-ATPase, F1-ATP synth 93.9 0.069 2.4E-06 58.7 6.5 50 212-262 152-202 (473)
286 4gp7_A Metallophosphoesterase; 93.9 0.033 1.1E-06 53.0 3.6 24 210-233 8-31 (171)
287 1knq_A Gluconate kinase; ALFA/ 93.8 0.038 1.3E-06 52.7 4.0 24 210-233 7-30 (175)
288 2rhm_A Putative kinase; P-loop 93.8 0.034 1.2E-06 54.1 3.6 24 210-233 4-27 (193)
289 2w0m_A SSO2452; RECA, SSPF, un 93.8 0.085 2.9E-06 52.9 6.8 39 211-251 23-61 (235)
290 1kag_A SKI, shikimate kinase I 93.8 0.026 8.8E-07 53.8 2.6 22 212-233 5-26 (173)
291 3trf_A Shikimate kinase, SK; a 93.7 0.028 9.7E-07 54.2 2.8 23 211-233 5-27 (185)
292 3tau_A Guanylate kinase, GMP k 93.7 0.033 1.1E-06 55.0 3.3 25 210-234 7-31 (208)
293 4eun_A Thermoresistant glucoki 93.7 0.032 1.1E-06 54.7 3.1 24 210-233 28-51 (200)
294 1nks_A Adenylate kinase; therm 93.7 0.034 1.2E-06 54.0 3.3 23 212-234 2-24 (194)
295 3tr0_A Guanylate kinase, GMP k 93.6 0.035 1.2E-06 54.6 3.3 23 211-233 7-29 (205)
296 3asz_A Uridine kinase; cytidin 93.6 0.04 1.4E-06 54.5 3.7 24 210-233 5-28 (211)
297 2qt1_A Nicotinamide riboside k 93.5 0.049 1.7E-06 53.6 4.3 26 209-234 19-44 (207)
298 2qor_A Guanylate kinase; phosp 93.5 0.03 1E-06 55.1 2.6 25 210-234 11-35 (204)
299 2bdt_A BH3686; alpha-beta prot 93.4 0.041 1.4E-06 53.3 3.4 22 212-233 3-24 (189)
300 3umf_A Adenylate kinase; rossm 93.4 0.039 1.3E-06 54.5 3.2 26 209-234 27-52 (217)
301 1ixz_A ATP-dependent metallopr 93.4 0.063 2.1E-06 54.9 4.9 51 184-234 16-72 (254)
302 1pgv_A TMD-1, tropomodulin TMD 93.4 0.11 3.6E-06 50.2 6.1 59 591-649 39-108 (197)
303 3t61_A Gluconokinase; PSI-biol 93.3 0.032 1.1E-06 54.8 2.4 24 211-234 18-41 (202)
304 1ye8_A Protein THEP1, hypothet 93.3 0.042 1.4E-06 52.6 3.2 22 213-234 2-23 (178)
305 3a00_A Guanylate kinase, GMP k 93.3 0.032 1.1E-06 53.9 2.4 22 212-233 2-23 (186)
306 1uf9_A TT1252 protein; P-loop, 93.3 0.048 1.6E-06 53.4 3.7 25 209-233 6-30 (203)
307 3iij_A Coilin-interacting nucl 93.3 0.033 1.1E-06 53.4 2.4 23 211-233 11-33 (180)
308 2j41_A Guanylate kinase; GMP, 93.2 0.043 1.5E-06 54.0 3.3 24 211-234 6-29 (207)
309 2ze6_A Isopentenyl transferase 93.2 0.042 1.4E-06 56.1 3.2 23 212-234 2-24 (253)
310 1kht_A Adenylate kinase; phosp 93.2 0.04 1.4E-06 53.4 3.0 22 212-233 4-25 (192)
311 2ck3_D ATP synthase subunit be 93.2 0.2 6.9E-06 54.9 8.7 65 195-265 142-207 (482)
312 4a1f_A DNAB helicase, replicat 93.2 0.18 6.2E-06 53.3 8.2 54 210-267 45-98 (338)
313 1ukz_A Uridylate kinase; trans 93.2 0.052 1.8E-06 53.2 3.8 25 209-233 13-37 (203)
314 1ex7_A Guanylate kinase; subst 93.2 0.028 9.6E-07 54.0 1.7 22 212-233 2-23 (186)
315 4akg_A Glutathione S-transfera 93.1 0.54 1.9E-05 63.2 14.2 80 212-302 1268-1347(2695)
316 1lvg_A Guanylate kinase, GMP k 93.1 0.036 1.2E-06 54.2 2.4 22 212-233 5-26 (198)
317 2c95_A Adenylate kinase 1; tra 93.1 0.046 1.6E-06 53.2 3.2 23 211-233 9-31 (196)
318 1y63_A LMAJ004144AAA protein; 93.1 0.046 1.6E-06 52.7 3.1 24 210-233 9-32 (184)
319 1tev_A UMP-CMP kinase; ploop, 93.1 0.048 1.7E-06 53.0 3.3 23 211-233 3-25 (196)
320 2yvu_A Probable adenylyl-sulfa 93.0 0.059 2E-06 52.0 3.8 25 210-234 12-36 (186)
321 3ney_A 55 kDa erythrocyte memb 93.0 0.048 1.6E-06 52.8 3.1 25 210-234 18-42 (197)
322 1xjc_A MOBB protein homolog; s 93.0 0.049 1.7E-06 51.3 3.0 25 210-234 3-27 (169)
323 3a4m_A L-seryl-tRNA(SEC) kinas 93.0 0.051 1.7E-06 55.8 3.4 23 211-233 4-26 (260)
324 2jaq_A Deoxyguanosine kinase; 93.0 0.046 1.6E-06 53.6 3.0 22 213-234 2-23 (205)
325 3aez_A Pantothenate kinase; tr 92.9 0.056 1.9E-06 56.9 3.7 25 209-233 88-112 (312)
326 1via_A Shikimate kinase; struc 92.9 0.04 1.4E-06 52.6 2.4 21 213-233 6-26 (175)
327 1zuh_A Shikimate kinase; alpha 92.9 0.045 1.6E-06 51.8 2.8 24 210-233 6-29 (168)
328 2if2_A Dephospho-COA kinase; a 92.9 0.05 1.7E-06 53.4 3.1 22 212-233 2-23 (204)
329 3kl4_A SRP54, signal recogniti 92.8 0.44 1.5E-05 52.2 10.8 25 210-234 96-120 (433)
330 3cm0_A Adenylate kinase; ATP-b 92.8 0.057 1.9E-06 52.1 3.4 23 211-233 4-26 (186)
331 1htw_A HI0065; nucleotide-bind 92.8 0.065 2.2E-06 50.0 3.6 24 210-233 32-55 (158)
332 1znw_A Guanylate kinase, GMP k 92.8 0.053 1.8E-06 53.4 3.2 24 210-233 19-42 (207)
333 2bbw_A Adenylate kinase 4, AK4 92.8 0.052 1.8E-06 55.2 3.2 23 211-233 27-49 (246)
334 1jjv_A Dephospho-COA kinase; P 92.8 0.059 2E-06 53.0 3.4 22 212-233 3-24 (206)
335 1iy2_A ATP-dependent metallopr 92.7 0.082 2.8E-06 54.8 4.7 51 184-234 40-96 (278)
336 2plr_A DTMP kinase, probable t 92.7 0.059 2E-06 53.2 3.4 23 212-234 5-27 (213)
337 1rj9_A FTSY, signal recognitio 92.7 0.059 2E-06 56.5 3.5 24 210-233 101-124 (304)
338 1cke_A CK, MSSA, protein (cyti 92.7 0.054 1.8E-06 54.2 3.2 22 212-233 6-27 (227)
339 1qf9_A UMP/CMP kinase, protein 92.7 0.075 2.6E-06 51.5 4.1 23 211-233 6-28 (194)
340 2cdn_A Adenylate kinase; phosp 92.7 0.06 2.1E-06 52.7 3.4 24 210-233 19-42 (201)
341 2xxa_A Signal recognition part 92.7 0.42 1.4E-05 52.6 10.4 42 193-234 79-123 (433)
342 3l0o_A Transcription terminati 92.6 0.26 9E-06 52.3 8.1 53 194-252 163-216 (427)
343 2iyv_A Shikimate kinase, SK; t 92.6 0.041 1.4E-06 53.0 2.0 22 212-233 3-24 (184)
344 2jeo_A Uridine-cytidine kinase 92.6 0.069 2.3E-06 54.2 3.7 24 210-233 24-47 (245)
345 2bwj_A Adenylate kinase 5; pho 92.5 0.056 1.9E-06 52.7 2.9 22 212-233 13-34 (199)
346 1z6g_A Guanylate kinase; struc 92.5 0.05 1.7E-06 54.1 2.6 23 211-233 23-45 (218)
347 1s96_A Guanylate kinase, GMP k 92.4 0.063 2.1E-06 53.3 3.1 25 210-234 15-39 (219)
348 3fwy_A Light-independent proto 92.4 0.069 2.4E-06 56.2 3.6 41 209-251 46-86 (314)
349 1e6c_A Shikimate kinase; phosp 92.4 0.048 1.6E-06 51.9 2.2 22 212-233 3-24 (173)
350 2j37_W Signal recognition part 92.4 0.91 3.1E-05 50.8 12.8 42 193-234 80-124 (504)
351 1g8p_A Magnesium-chelatase 38 92.4 0.058 2E-06 58.1 3.0 45 184-234 24-68 (350)
352 3tlx_A Adenylate kinase 2; str 92.4 0.1 3.5E-06 52.8 4.7 24 210-233 28-51 (243)
353 1aky_A Adenylate kinase; ATP:A 92.3 0.062 2.1E-06 53.5 3.0 23 211-233 4-26 (220)
354 1uj2_A Uridine-cytidine kinase 92.3 0.071 2.4E-06 54.4 3.4 25 209-233 20-44 (252)
355 2pez_A Bifunctional 3'-phospho 92.3 0.075 2.6E-06 50.9 3.4 24 210-233 4-27 (179)
356 2vli_A Antibiotic resistance p 92.3 0.043 1.5E-06 52.7 1.7 23 211-233 5-27 (183)
357 1pgv_A TMD-1, tropomodulin TMD 92.3 0.13 4.3E-06 49.7 4.9 113 561-674 39-168 (197)
358 2pt5_A Shikimate kinase, SK; a 92.3 0.066 2.3E-06 50.6 3.0 21 213-233 2-22 (168)
359 2ffh_A Protein (FFH); SRP54, s 92.2 0.36 1.2E-05 52.8 9.1 25 210-234 97-121 (425)
360 2z0h_A DTMP kinase, thymidylat 92.2 0.15 5E-06 49.6 5.5 22 213-234 2-23 (197)
361 1nn5_A Similar to deoxythymidy 92.2 0.071 2.4E-06 52.7 3.3 24 211-234 9-32 (215)
362 3upu_A ATP-dependent DNA helic 92.2 0.32 1.1E-05 54.4 9.0 23 212-234 46-68 (459)
363 1sq5_A Pantothenate kinase; P- 92.1 0.16 5.4E-06 53.5 6.0 25 209-233 78-102 (308)
364 1fx0_B ATP synthase beta chain 92.1 0.4 1.4E-05 52.8 9.2 64 196-265 155-219 (498)
365 2wwf_A Thymidilate kinase, put 92.1 0.071 2.4E-06 52.6 3.1 24 211-234 10-33 (212)
366 4e22_A Cytidylate kinase; P-lo 92.1 0.074 2.5E-06 54.2 3.2 23 211-233 27-49 (252)
367 2pbr_A DTMP kinase, thymidylat 92.1 0.071 2.4E-06 51.7 3.0 21 213-233 2-22 (195)
368 3e1s_A Exodeoxyribonuclease V, 92.1 0.28 9.7E-06 56.3 8.4 104 212-329 205-314 (574)
369 2hf9_A Probable hydrogenase ni 92.1 0.13 4.4E-06 51.3 5.0 25 210-234 37-61 (226)
370 2f1r_A Molybdopterin-guanine d 92.0 0.058 2E-06 51.1 2.1 23 212-234 3-25 (171)
371 2f6r_A COA synthase, bifunctio 91.9 0.095 3.2E-06 54.4 3.9 25 209-233 73-97 (281)
372 1g41_A Heat shock protein HSLU 91.9 0.13 4.4E-06 56.5 5.1 51 184-234 15-73 (444)
373 2grj_A Dephospho-COA kinase; T 91.9 0.085 2.9E-06 51.1 3.3 24 210-233 11-34 (192)
374 1zd8_A GTP:AMP phosphotransfer 91.9 0.074 2.5E-06 53.2 3.0 23 211-233 7-29 (227)
375 1gtv_A TMK, thymidylate kinase 91.8 0.048 1.6E-06 54.0 1.5 22 213-234 2-23 (214)
376 1tue_A Replication protein E1; 91.8 0.11 3.7E-06 50.2 3.8 37 193-234 45-81 (212)
377 1vma_A Cell division protein F 91.8 0.16 5.6E-06 53.0 5.6 26 209-234 102-127 (306)
378 3llm_A ATP-dependent RNA helic 91.8 0.36 1.2E-05 48.4 8.0 91 212-303 77-188 (235)
379 1m7g_A Adenylylsulfate kinase; 91.8 0.094 3.2E-06 51.8 3.5 25 210-234 24-48 (211)
380 3b9q_A Chloroplast SRP recepto 91.7 0.095 3.2E-06 54.8 3.6 25 210-234 99-123 (302)
381 1zak_A Adenylate kinase; ATP:A 91.7 0.073 2.5E-06 53.1 2.7 24 211-234 5-28 (222)
382 3zvl_A Bifunctional polynucleo 91.7 0.4 1.4E-05 52.8 8.8 26 209-234 256-281 (416)
383 3hjn_A DTMP kinase, thymidylat 91.7 0.23 7.8E-06 48.3 6.1 50 213-264 2-51 (197)
384 2og2_A Putative signal recogni 91.7 0.18 6.2E-06 53.9 5.8 26 209-234 155-180 (359)
385 2v54_A DTMP kinase, thymidylat 91.6 0.085 2.9E-06 51.7 3.0 23 212-234 5-27 (204)
386 2qe7_A ATP synthase subunit al 91.6 0.21 7.2E-06 55.1 6.3 95 195-300 151-263 (502)
387 2i3b_A HCR-ntpase, human cance 91.6 0.077 2.6E-06 51.2 2.6 23 212-234 2-24 (189)
388 2wsm_A Hydrogenase expression/ 91.5 0.14 4.7E-06 50.9 4.5 40 189-234 14-53 (221)
389 3fb4_A Adenylate kinase; psych 91.5 0.088 3E-06 52.2 3.0 22 213-234 2-23 (216)
390 3tif_A Uncharacterized ABC tra 91.5 0.093 3.2E-06 52.7 3.2 23 211-233 31-53 (235)
391 2onk_A Molybdate/tungstate ABC 91.5 0.091 3.1E-06 52.9 3.1 22 212-233 25-46 (240)
392 1vht_A Dephospho-COA kinase; s 91.4 0.11 3.7E-06 51.6 3.6 23 211-233 4-26 (218)
393 3cmu_A Protein RECA, recombina 91.4 0.26 9E-06 63.8 7.8 85 210-301 1426-1515(2050)
394 2pcj_A ABC transporter, lipopr 91.4 0.097 3.3E-06 52.2 3.1 23 211-233 30-52 (224)
395 3dl0_A Adenylate kinase; phosp 91.3 0.095 3.2E-06 51.9 3.0 21 213-233 2-22 (216)
396 2ged_A SR-beta, signal recogni 91.3 0.15 5.2E-06 49.2 4.5 25 210-234 47-71 (193)
397 3e70_C DPA, signal recognition 91.3 0.12 4.1E-06 54.7 3.9 25 210-234 128-152 (328)
398 2ehv_A Hypothetical protein PH 91.2 0.1 3.5E-06 53.0 3.2 24 210-233 29-52 (251)
399 1q57_A DNA primase/helicase; d 91.1 0.57 1.9E-05 53.1 9.6 55 210-267 241-295 (503)
400 3lnc_A Guanylate kinase, GMP k 91.1 0.074 2.5E-06 53.4 2.0 23 211-233 27-50 (231)
401 2cbz_A Multidrug resistance-as 91.1 0.11 3.7E-06 52.3 3.2 24 211-234 31-54 (237)
402 3k1j_A LON protease, ATP-depen 91.1 0.12 4.1E-06 60.1 4.0 43 184-234 41-83 (604)
403 3nwj_A ATSK2; P loop, shikimat 91.0 0.083 2.8E-06 53.5 2.2 22 212-233 49-70 (250)
404 3sr0_A Adenylate kinase; phosp 91.0 0.098 3.4E-06 51.2 2.7 22 213-234 2-23 (206)
405 1np6_A Molybdopterin-guanine d 91.0 0.11 3.6E-06 49.4 2.8 24 211-234 6-29 (174)
406 3d3q_A TRNA delta(2)-isopenten 90.9 0.12 3.9E-06 54.6 3.3 23 212-234 8-30 (340)
407 1b0u_A Histidine permease; ABC 90.9 0.11 3.9E-06 53.0 3.2 24 210-233 31-54 (262)
408 3be4_A Adenylate kinase; malar 90.9 0.097 3.3E-06 52.0 2.5 23 212-234 6-28 (217)
409 3p32_A Probable GTPase RV1496/ 90.8 0.23 7.8E-06 53.4 5.7 37 193-233 65-101 (355)
410 1mv5_A LMRA, multidrug resista 90.8 0.14 4.6E-06 51.9 3.6 24 210-233 27-50 (243)
411 3gfo_A Cobalt import ATP-bindi 90.8 0.11 3.9E-06 53.3 3.1 23 211-233 34-56 (275)
412 3r20_A Cytidylate kinase; stru 90.7 0.12 4.2E-06 51.4 3.2 23 211-233 9-31 (233)
413 4eaq_A DTMP kinase, thymidylat 90.7 0.22 7.5E-06 49.8 5.0 25 210-234 25-49 (229)
414 2olj_A Amino acid ABC transpor 90.7 0.12 4.2E-06 52.7 3.2 24 210-233 49-72 (263)
415 3a8t_A Adenylate isopentenyltr 90.7 0.15 5E-06 53.6 3.8 25 210-234 39-63 (339)
416 3ake_A Cytidylate kinase; CMP 90.6 0.12 4.1E-06 50.7 3.0 21 213-233 4-24 (208)
417 3b85_A Phosphate starvation-in 90.6 0.094 3.2E-06 51.5 2.1 23 212-234 23-45 (208)
418 3cf2_A TER ATPase, transitiona 90.6 0.27 9.3E-06 58.2 6.4 99 183-302 476-581 (806)
419 2r6a_A DNAB helicase, replicat 90.5 0.73 2.5E-05 51.4 9.7 52 210-264 202-253 (454)
420 1ji0_A ABC transporter; ATP bi 90.5 0.13 4.4E-06 51.9 3.1 23 211-233 32-54 (240)
421 1cr0_A DNA primase/helicase; R 90.4 0.35 1.2E-05 50.5 6.5 53 210-265 34-86 (296)
422 3exa_A TRNA delta(2)-isopenten 90.4 0.15 5E-06 52.9 3.4 24 211-234 3-26 (322)
423 4g1u_C Hemin import ATP-bindin 90.4 0.13 4.4E-06 52.8 3.0 23 211-233 37-59 (266)
424 2q6t_A DNAB replication FORK h 90.4 0.74 2.5E-05 51.2 9.6 54 210-266 199-252 (444)
425 1e4v_A Adenylate kinase; trans 90.4 0.13 4.5E-06 50.8 3.1 21 213-233 2-22 (214)
426 1sgw_A Putative ABC transporte 90.4 0.11 3.8E-06 51.2 2.5 22 212-233 36-57 (214)
427 1vpl_A ABC transporter, ATP-bi 90.4 0.14 4.6E-06 52.2 3.2 23 211-233 41-63 (256)
428 1g6h_A High-affinity branched- 90.4 0.13 4.5E-06 52.4 3.1 23 211-233 33-55 (257)
429 2xb4_A Adenylate kinase; ATP-b 90.3 0.13 4.5E-06 51.2 3.0 21 213-233 2-22 (223)
430 3crm_A TRNA delta(2)-isopenten 90.3 0.14 4.8E-06 53.6 3.2 22 212-233 6-27 (323)
431 2vp4_A Deoxynucleoside kinase; 90.3 0.15 5.2E-06 51.0 3.5 25 209-233 18-42 (230)
432 2yhs_A FTSY, cell division pro 90.3 0.25 8.5E-06 54.8 5.3 44 209-255 291-334 (503)
433 2d2e_A SUFC protein; ABC-ATPas 90.3 0.14 4.8E-06 52.0 3.2 23 211-233 29-51 (250)
434 2pze_A Cystic fibrosis transme 90.2 0.14 4.7E-06 51.2 3.1 24 211-234 34-57 (229)
435 2zu0_C Probable ATP-dependent 90.2 0.15 5E-06 52.4 3.3 23 211-233 46-68 (267)
436 2ghi_A Transport protein; mult 90.2 0.14 4.8E-06 52.3 3.2 23 211-233 46-68 (260)
437 2ff7_A Alpha-hemolysin translo 90.2 0.14 4.7E-06 51.9 3.1 23 211-233 35-57 (247)
438 2ixe_A Antigen peptide transpo 90.2 0.14 4.9E-06 52.6 3.2 24 210-233 44-67 (271)
439 1ak2_A Adenylate kinase isoenz 90.2 0.14 5E-06 51.3 3.2 24 211-234 16-39 (233)
440 3gqb_B V-type ATP synthase bet 90.1 0.16 5.5E-06 55.4 3.5 100 196-300 137-260 (464)
441 1oix_A RAS-related protein RAB 90.1 0.15 5.2E-06 49.3 3.1 24 211-234 29-52 (191)
442 1j8m_F SRP54, signal recogniti 90.0 0.58 2E-05 48.7 7.7 24 211-234 98-121 (297)
443 1yrb_A ATP(GTP)binding protein 90.0 0.2 6.8E-06 51.3 4.1 25 209-233 12-36 (262)
444 2yz2_A Putative ABC transporte 90.0 0.15 5.2E-06 52.2 3.2 23 211-233 33-55 (266)
445 1zu4_A FTSY; GTPase, signal re 89.9 0.17 5.9E-06 53.3 3.6 25 210-234 104-128 (320)
446 2r9v_A ATP synthase subunit al 89.9 0.24 8.2E-06 54.7 4.8 97 195-300 164-276 (515)
447 2eyu_A Twitching motility prot 89.9 0.18 6.1E-06 51.5 3.7 24 210-233 24-47 (261)
448 2v9p_A Replication protein E1; 89.9 0.15 5.2E-06 53.1 3.1 24 210-233 125-148 (305)
449 3foz_A TRNA delta(2)-isopenten 89.9 0.19 6.4E-06 52.0 3.7 24 210-233 9-32 (316)
450 2qi9_C Vitamin B12 import ATP- 89.9 0.15 5.2E-06 51.5 3.1 23 211-233 26-48 (249)
451 2zej_A Dardarin, leucine-rich 89.8 0.15 5.1E-06 48.9 2.8 22 213-234 4-25 (184)
452 2wji_A Ferrous iron transport 89.8 0.2 6.7E-06 47.1 3.6 23 212-234 4-26 (165)
453 1ltq_A Polynucleotide kinase; 89.7 0.16 5.5E-06 53.3 3.2 22 212-233 3-24 (301)
454 2nq2_C Hypothetical ABC transp 89.7 0.16 5.5E-06 51.6 3.0 23 211-233 31-53 (253)
455 2ihy_A ABC transporter, ATP-bi 89.7 0.16 5.5E-06 52.4 3.1 23 211-233 47-69 (279)
456 3cmu_A Protein RECA, recombina 89.6 0.45 1.5E-05 61.7 7.6 86 210-302 382-472 (2050)
457 3vr4_D V-type sodium ATPase su 89.6 0.31 1.1E-05 53.1 5.3 98 196-300 141-257 (465)
458 2dr3_A UPF0273 protein PH0284; 89.5 0.23 7.9E-06 50.2 4.1 40 210-251 22-61 (247)
459 2v3c_C SRP54, signal recogniti 89.5 0.2 6.7E-06 55.2 3.7 42 193-234 78-122 (432)
460 1a7j_A Phosphoribulokinase; tr 89.4 0.09 3.1E-06 54.7 0.9 24 210-233 4-27 (290)
461 4edh_A DTMP kinase, thymidylat 89.4 0.51 1.7E-05 46.4 6.3 24 211-234 6-29 (213)
462 3end_A Light-independent proto 89.3 0.2 7E-06 52.7 3.6 43 209-253 39-81 (307)
463 2dyk_A GTP-binding protein; GT 89.3 0.22 7.4E-06 46.2 3.4 23 212-234 2-24 (161)
464 3mfy_A V-type ATP synthase alp 89.2 0.7 2.4E-05 51.4 7.7 58 195-261 216-274 (588)
465 3sop_A Neuronal-specific septi 89.1 0.2 6.8E-06 51.5 3.3 21 213-233 4-24 (270)
466 2qmh_A HPR kinase/phosphorylas 89.1 0.2 6.9E-06 48.0 3.0 23 212-234 35-57 (205)
467 3nh6_A ATP-binding cassette SU 89.0 0.17 5.8E-06 52.9 2.7 24 210-233 79-102 (306)
468 1ls1_A Signal recognition part 89.0 0.22 7.5E-06 51.9 3.6 24 211-234 98-121 (295)
469 3oaa_A ATP synthase subunit al 89.0 0.57 2E-05 51.5 6.8 95 195-300 151-263 (513)
470 1nlf_A Regulatory protein REPA 88.9 0.2 7E-06 51.8 3.3 23 211-233 30-52 (279)
471 2c61_A A-type ATP synthase non 88.9 0.25 8.7E-06 54.2 4.0 101 195-300 141-258 (469)
472 2f9l_A RAB11B, member RAS onco 88.9 0.21 7.1E-06 48.6 3.1 24 211-234 5-28 (199)
473 2wjg_A FEOB, ferrous iron tran 88.9 0.3 1E-05 46.8 4.2 25 210-234 6-30 (188)
474 1svm_A Large T antigen; AAA+ f 88.8 0.21 7.1E-06 53.9 3.3 24 210-233 168-191 (377)
475 2pjz_A Hypothetical protein ST 88.8 0.21 7.1E-06 51.0 3.1 22 212-233 31-52 (263)
476 3cmw_A Protein RECA, recombina 88.8 0.45 1.5E-05 60.9 6.7 82 212-300 384-470 (1706)
477 2bbs_A Cystic fibrosis transme 88.7 0.22 7.6E-06 51.6 3.3 25 210-234 63-87 (290)
478 2ck3_A ATP synthase subunit al 88.6 0.64 2.2E-05 51.4 6.9 101 195-300 151-271 (510)
479 2ce2_X GTPase HRAS; signaling 88.6 0.22 7.6E-06 46.3 3.0 22 213-234 5-26 (166)
480 1q3t_A Cytidylate kinase; nucl 88.6 0.23 7.9E-06 49.9 3.3 25 209-233 14-38 (236)
481 3bgw_A DNAB-like replicative h 88.6 1.2 4.1E-05 49.2 9.4 52 210-265 196-247 (444)
482 2ocp_A DGK, deoxyguanosine kin 88.5 0.25 8.6E-06 49.8 3.5 24 211-234 2-25 (241)
483 2lkc_A Translation initiation 88.5 0.33 1.1E-05 45.9 4.2 25 210-234 7-31 (178)
484 1fx0_A ATP synthase alpha chai 88.5 0.25 8.6E-06 54.5 3.7 84 211-300 163-264 (507)
485 3ld9_A DTMP kinase, thymidylat 88.5 0.5 1.7E-05 46.7 5.5 26 209-234 19-44 (223)
486 2r8r_A Sensor protein; KDPD, P 88.2 0.46 1.6E-05 46.7 5.0 106 212-331 7-127 (228)
487 3kta_A Chromosome segregation 88.1 0.27 9.1E-06 47.0 3.3 22 212-233 27-48 (182)
488 3fvq_A Fe(3+) IONS import ATP- 88.1 0.26 8.9E-06 52.5 3.4 23 211-233 30-52 (359)
489 3eph_A TRNA isopentenyltransfe 88.0 0.26 9E-06 53.0 3.3 22 212-233 3-24 (409)
490 1nij_A Hypothetical protein YJ 87.9 0.24 8.2E-06 52.3 3.0 25 210-234 3-27 (318)
491 3tui_C Methionine import ATP-b 87.8 0.27 9.1E-06 52.5 3.3 24 210-233 53-76 (366)
492 3q72_A GTP-binding protein RAD 87.8 0.26 8.9E-06 46.0 2.9 22 213-234 4-25 (166)
493 1z2a_A RAS-related protein RAB 87.8 0.32 1.1E-05 45.4 3.5 24 211-234 5-28 (168)
494 2yv5_A YJEQ protein; hydrolase 87.7 0.36 1.2E-05 50.5 4.2 33 193-235 156-188 (302)
495 3con_A GTPase NRAS; structural 87.7 0.26 8.8E-06 47.4 2.9 23 212-234 22-44 (190)
496 2nzj_A GTP-binding protein REM 87.6 0.36 1.2E-05 45.4 3.9 24 211-234 4-27 (175)
497 2hxs_A RAB-26, RAS-related pro 87.6 0.42 1.4E-05 45.1 4.3 25 210-234 5-29 (178)
498 1u8z_A RAS-related protein RAL 87.6 0.27 9.4E-06 45.8 2.9 23 212-234 5-27 (168)
499 3lv8_A DTMP kinase, thymidylat 87.6 0.59 2E-05 46.7 5.5 37 211-248 27-63 (236)
500 1fzq_A ADP-ribosylation factor 87.5 0.36 1.2E-05 46.1 3.8 25 210-234 15-39 (181)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.5e-49 Score=464.30 Aligned_cols=317 Identities=17% Similarity=0.238 Sum_probs=259.5
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhc--cccccccCCceEEEEeCCCC--CHHHHHHHH
Q 043855 187 YGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYN--DDRVRDHFDLKAWTCVSDDF--DVVRLIKVI 262 (946)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i 262 (946)
|||++++++|.++|.... +...++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ ++.+++.+|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699999999999997642 24679999999999999999999998 67899999999999999985 899999999
Q ss_pred HHHhcCCCC------CCcccHHHHHHHHHHHhCCc-eEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhHHH
Q 043855 263 LRSFVADPN------VDNRDLILLQLQLKKQLSGK-KFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGVAA 335 (946)
Q Consensus 263 l~~l~~~~~------~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~~ 335 (946)
+.+++.... ....+.+.++..+++.|+++ ||||||||||+.+...|... +||+||||||++.++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHHHH
Confidence 999986521 12335677889999999996 99999999998643345432 7999999999999998
Q ss_pred hhC-CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhccCCChHHHHHHHhhh
Q 043855 336 IMG-TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRGHHDKCDWEGVLRAK 414 (946)
Q Consensus 336 ~~~-~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~~~~~~ 414 (946)
.++ ...+|+|++|+++|||+||.+++|+.. .++.+++++++|+++|+|+||||+++|+.|+.+ .. +|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHH
Confidence 876 346799999999999999999988653 246788999999999999999999999999775 22 232333333
Q ss_pred cccCcccccccchhhhhhccCCChhHHHHhh-----------hhccCCCCCcccHHHHHHHHHHh--CCccccCCCCcHH
Q 043855 415 IWELPEERASFIPDLAISYRHLPPTLKQCFA-----------YCSLFPKGYEFEEKEIILLWSAV--GFLDHVQSGNASE 481 (946)
Q Consensus 415 ~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~-----------~~s~fp~~~~i~~~~li~~Wiae--g~i~~~~~~~~~e 481 (946)
.+.. ....+.+++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.....+.+.+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3221 2346899999999999999999999 999999999999 8899999 9998755467788
Q ss_pred HHHHHHHHHHHhCcCCcccCC-CCCceEechhHHHHHHHhcccceE
Q 043855 482 DLGRDIFRELCARSFFQESGE-DTSGFVMHDLVNGLAQWAGGQIYF 526 (946)
Q Consensus 482 ~~~~~~l~~L~~~~l~~~~~~-~~~~~~~Hdlv~~~a~~~~~~~~~ 526 (946)
++++ ||++|+++||++.... ...+|+|||+||++|++++.+++.
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 8888 9999999999998753 346799999999999999987664
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.6e-40 Score=384.71 Aligned_cols=287 Identities=18% Similarity=0.215 Sum_probs=231.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCc-eEEEEeCCCCCHHHHHHHHH
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDL-KAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~il 263 (946)
..|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..|+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 35999999999999997632 3689999999999999999999998888999987 99999999999888888887
Q ss_pred HHhcCCC---C--C-----CcccHHHHHHHHHHHh---CCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCC
Q 043855 264 RSFVADP---N--V-----DNRDLILLQLQLKKQL---SGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRN 330 (946)
Q Consensus 264 ~~l~~~~---~--~-----~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~ 330 (946)
+.+.... . . ...+.+.+...+++.+ .+||+||||||||+. ..|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccC
Confidence 7543210 0 0 1123455667777766 789999999999983 566654 2 68999999999
Q ss_pred hhHHHhhCCCCcEeCC------CCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhccCC-C
Q 043855 331 QGVAAIMGTVPAYQLK------KLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRGHH-D 403 (946)
Q Consensus 331 ~~v~~~~~~~~~~~l~------~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~-~ 403 (946)
+.++..+.....+.++ +|+++|||+||.+.. +.. . .++..+| |+|+||||+++|+.|+.+. +
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCC
Confidence 9998755433456666 999999999999883 322 1 1233333 9999999999999999874 6
Q ss_pred hHHHHHHHhhhcccCcccccccchhhhhhccCCChhH-HHHhhhhccCCCCCcccHHHHHHHHHHhCCccccCCCCcHHH
Q 043855 404 KCDWEGVLRAKIWELPEERASFIPDLAISYRHLPPTL-KQCFAYCSLFPKGYEFEEKEIILLWSAVGFLDHVQSGNASED 482 (946)
Q Consensus 404 ~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~-k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~ 482 (946)
.++|... ....+..+|.+||+.||++. |.||+|||+||+++.|+++.++.+|+++| ++
T Consensus 344 ~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------ee 402 (1221)
T 1vt4_I 344 WDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KS 402 (1221)
T ss_dssp HHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SH
T ss_pred HHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HH
Confidence 7788753 12468899999999999999 99999999999999999999999998876 23
Q ss_pred HHHHHHHHHHhCcCCcccCCCCCceEechhHHHHHH
Q 043855 483 LGRDIFRELCARSFFQESGEDTSGFVMHDLVNGLAQ 518 (946)
Q Consensus 483 ~~~~~l~~L~~~~l~~~~~~~~~~~~~Hdlv~~~a~ 518 (946)
.++.+|++|+++|||+... ....|+|||++++++.
T Consensus 403 dAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHhc
Confidence 5889999999999999853 4568999999999763
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.8e-38 Score=408.51 Aligned_cols=311 Identities=20% Similarity=0.289 Sum_probs=248.5
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc-cccC-CceEEEEeCCCCC--HHH
Q 043855 182 NEAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRV-RDHF-DLKAWTCVSDDFD--VVR 257 (946)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~--~~~ 257 (946)
....||||++++++|.++|.... +..++|+|+||||+||||||+++|++.++ ..+| +.++||++++..+ ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 34679999999999999997653 46799999999999999999999997543 4445 6777999998543 445
Q ss_pred HHHHHHHHhcCCCC---CCcccHHHHHHHHHHHhCCc--eEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChh
Q 043855 258 LIKVILRSFVADPN---VDNRDLILLQLQLKKQLSGK--KFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQG 332 (946)
Q Consensus 258 ~~~~il~~l~~~~~---~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~ 332 (946)
.+..++..+..... ....+.+.+...++..+.++ ||||||||||+. ..|..+ ++||+||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHH
Confidence 56677777765432 13457788899999999887 999999999974 344432 57899999999999
Q ss_pred HHHh-hCCCCcEeCCC-CChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhccCCChHHHHHH
Q 043855 333 VAAI-MGTVPAYQLKK-LSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRGHHDKCDWEGV 410 (946)
Q Consensus 333 v~~~-~~~~~~~~l~~-L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~~ 410 (946)
++.. ++....+.+.+ |+++|+++||...++.. .+..++++++|+++|+|+||||+++|++|+.+. ..|...
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~ 341 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYY 341 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHH
Confidence 9854 45667899996 99999999999988532 233456789999999999999999999998865 357766
Q ss_pred HhhhcccC----c----ccccccchhhhhhccCCChhHHHHhhhhccCCCCCcccHHHHHHHHHHhCCccccCCCCcHHH
Q 043855 411 LRAKIWEL----P----EERASFIPDLAISYRHLPPTLKQCFAYCSLFPKGYEFEEKEIILLWSAVGFLDHVQSGNASED 482 (946)
Q Consensus 411 ~~~~~~~~----~----~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e~ 482 (946)
++...... . .....+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~ 409 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TE 409 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HH
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HH
Confidence 65432211 1 1113588899999999999999999999999999999999999999443 57
Q ss_pred HHHHHHHHHHhCcCCcccCC-CCCceEechhHHHHHHHhcccc
Q 043855 483 LGRDIFRELCARSFFQESGE-DTSGFVMHDLVNGLAQWAGGQI 524 (946)
Q Consensus 483 ~~~~~l~~L~~~~l~~~~~~-~~~~~~~Hdlv~~~a~~~~~~~ 524 (946)
.++.++++|+++||++.... ....|+|||+||++|+..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 78999999999999997643 2346999999999999987654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=343.19 Aligned_cols=305 Identities=21% Similarity=0.315 Sum_probs=233.8
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc-cccC-CceEEEEeCCCCCHHHHHH
Q 043855 183 EAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRV-RDHF-DLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~~~~~~~ 260 (946)
...+|||+.++++|.++|.... +..++|+|+||||+||||||++++++.++ +.+| +.++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 3569999999999999997542 35789999999999999999999997665 7889 58999999875 3334444
Q ss_pred HH---HHHhcCCC---CCCcccHHHHHHHHHHHhCC--ceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChh
Q 043855 261 VI---LRSFVADP---NVDNRDLILLQLQLKKQLSG--KKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQG 332 (946)
Q Consensus 261 ~i---l~~l~~~~---~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~ 332 (946)
.+ +..+.... .....+.+.+...+...+.+ +++||||||+|+. ..+. .+ .+|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCCcH
Confidence 33 34444211 11345667777788887765 7899999999864 2332 22 46899999999998
Q ss_pred HHHhhCCCCcEeC---CCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhccCCChHHHHH
Q 043855 333 VAAIMGTVPAYQL---KKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRGHHDKCDWEG 409 (946)
Q Consensus 333 v~~~~~~~~~~~l---~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~ 409 (946)
++..+. ...+++ ++|+++|+++||...++.. .+...+.+.+|+++|+|+||||..+|+.++.+. ..|..
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~ 340 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEY 340 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHH
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHH
Confidence 876543 233444 6899999999999988642 122345788999999999999999999998764 36877
Q ss_pred HHhhhcccC--------cccccccchhhhhhccCCChhHHHHhhhhccCCCCCcccHHHHHHHHHHhCCccccCCCCcHH
Q 043855 410 VLRAKIWEL--------PEERASFIPDLAISYRHLPPTLKQCFAYCSLFPKGYEFEEKEIILLWSAVGFLDHVQSGNASE 481 (946)
Q Consensus 410 ~~~~~~~~~--------~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~~~e 481 (946)
++....... ......+..++..||+.||++.|.||++||+||+++.|+.+.++..|.++ .
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~ 408 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------T 408 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------H
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------H
Confidence 765433221 11123578899999999999999999999999999999999999999432 3
Q ss_pred HHHHHHHHHHHhCcCCcccCC-CCCceEechhHHHHHHHhc
Q 043855 482 DLGRDIFRELCARSFFQESGE-DTSGFVMHDLVNGLAQWAG 521 (946)
Q Consensus 482 ~~~~~~l~~L~~~~l~~~~~~-~~~~~~~Hdlv~~~a~~~~ 521 (946)
+.++.++++|+++||++.... ....|+||++++++++...
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 467899999999999986542 3357999999999998874
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=4e-27 Score=280.88 Aligned_cols=330 Identities=14% Similarity=0.162 Sum_probs=251.0
Q ss_pred hhhhhcccCceeEEEecCCCCcc------------------CCcccc--CCCCCcEEeccCCCcc-ccccchhcCCCCcE
Q 043855 585 VLHQLLRLQRLRVFSLCGYEIFE------------------LPDSIG--ELRHLRYLNLSRTLIE-VLPESVNKLYKLQT 643 (946)
Q Consensus 585 ~~~~l~~~~~Lr~L~L~~~~~~~------------------lp~~i~--~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~ 643 (946)
+|..+.++++|++|+|++|.++. +|..++ ++++|++|+|++|.+. .+|..++++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 56667799999999999999998 999999 9999999999999865 78999999999999
Q ss_pred EecCCCCchh--hchhhhccc------CccCeeecCCCCCcccccc--ccCCCCCCcccCceecCCCCCCChhccccccc
Q 043855 644 LLLEDCDRLK--KLCASLGNL------INLHHLNNSNTDSLEEMPI--GIGKLTSLQTLCSFVVGKDSGSGLRELKLLKH 713 (946)
Q Consensus 644 L~L~~~~~l~--~lp~~i~~L------~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~ 713 (946)
|++++|..+. .+|..++++ ++|++|++++|. +..+|. .++++++|++|++..+.... .+..+..+++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g--~ip~~~~l~~ 354 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEG--KLPAFGSEIK 354 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEE--ECCCCEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCcc--chhhhCCCCC
Confidence 9999995244 699999887 999999999998 679998 89999999999776554321 1125566666
Q ss_pred cCCeeEEecCCCCCCccccccccCCcccc-cCceEEEecCCCCCCCchhhhhHHhHhccCCC--CCCcceEEEeecCCCC
Q 043855 714 LHGTLNISKLENVKCIVDAEEAQLDGKKN-LKVLLLRWTCSTDDSSLREAETEKGVLTMLKP--HKNLEQICISGYGGTE 790 (946)
Q Consensus 714 L~~~L~i~~l~~~~~~~~~~~~~l~~~~~-L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~ 790 (946)
|+ .|.+.+.. ...++..+.++++ |+.|++++|.... ++..+.. +++|+.|++++|.+..
T Consensus 355 L~-~L~L~~N~-----l~~lp~~l~~l~~~L~~L~Ls~N~l~~------------lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 355 LA-SLNLAYNQ-----ITEIPANFCGFTEQVENLSFAHNKLKY------------IPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp ES-EEECCSSE-----EEECCTTSEEECTTCCEEECCSSCCSS------------CCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CC-EEECCCCc-----cccccHhhhhhcccCcEEEccCCcCcc------------cchhhhhcccCccCEEECcCCcCCC
Confidence 66 66665432 1245566888888 9999999987654 3334444 3489999999998764
Q ss_pred -CCcCcC-----CCCCCCccEEEEecCCCCCCCCC--CCCCCCCceeeeccccCceeeCccccCCC--CCCcCCCcceee
Q 043855 791 -FPTWLG-----DFSFSNLVTLKFEDCGMCTSLPS--VGQLPSLKHLVVRRMSRVKRLGSEFYGND--CPIPFLCLETLC 860 (946)
Q Consensus 791 -~p~~~~-----~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~ 860 (946)
.|.++. ...+++|+.|+|++|.+. .+|. +..+++|+.|+|++|. +..++...+... ....+++|+.|+
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEE
T ss_pred cchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEE
Confidence 455543 114579999999999876 5663 5568999999999874 456665543210 011234999999
Q ss_pred ccCCcccccccccCCCCCCC--CCCcccEeeecCCcCccccCCC---CCCCCCEEEEcccc---------cccccCCCCC
Q 043855 861 FEDMREWEDWIPCGSSQGIE--LFPNLREFRILRCPKLQGTLPE---RLPELKMFVIQSCE---------ELLVSVTSLP 926 (946)
Q Consensus 861 l~~~~~l~~~~~~~~~~~~~--~~p~L~~L~l~~c~~L~~~lp~---~l~~L~~L~i~~c~---------~l~~~l~~l~ 926 (946)
++++. +..+. . ... .+++|+.|++++| +++ .+|. .+++|+.|++++|. .++..+.+++
T Consensus 495 Ls~N~-l~~lp-~----~~~~~~l~~L~~L~Ls~N-~l~-~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 495 LRFNK-LTKLS-D----DFRATTLPYLVGIDLSYN-SFS-KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp CCSSC-CCBCC-G----GGSTTTCTTCCEEECCSS-CCS-SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred CcCCc-CCccC-h----hhhhccCCCcCEEECCCC-CCC-CcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 99864 33332 1 133 7999999999999 788 4884 57999999996533 3355677899
Q ss_pred CccEEEEcCCCCCCCCCCCC
Q 043855 927 TLCRFKIGGCKNVPDFFHSL 946 (946)
Q Consensus 927 ~L~~L~l~~c~~l~~lp~~l 946 (946)
+|++|++++| .++.+|..+
T Consensus 567 ~L~~L~Ls~N-~l~~ip~~~ 585 (636)
T 4eco_A 567 SLTQLQIGSN-DIRKVNEKI 585 (636)
T ss_dssp SCCEEECCSS-CCCBCCSCC
T ss_pred CCCEEECCCC-cCCccCHhH
Confidence 9999999999 559999753
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.9e-26 Score=277.44 Aligned_cols=328 Identities=14% Similarity=0.144 Sum_probs=224.7
Q ss_pred hhhhhcccCceeEEEecCCCCcc------------------CCcccc--CCCCCcEEeccCCCcc-ccccchhcCCCCcE
Q 043855 585 VLHQLLRLQRLRVFSLCGYEIFE------------------LPDSIG--ELRHLRYLNLSRTLIE-VLPESVNKLYKLQT 643 (946)
Q Consensus 585 ~~~~l~~~~~Lr~L~L~~~~~~~------------------lp~~i~--~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~ 643 (946)
+|..+.++++|++|+|++|.++. +|..++ ++++|++|+|++|.+. .+|..+++|++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 56677799999999999999998 999988 9999999999999855 88999999999999
Q ss_pred EecCCCCchh--hchhhhcccC-------ccCeeecCCCCCcccccc--ccCCCCCCcccCceecCCCCCCChhcccccc
Q 043855 644 LLLEDCDRLK--KLCASLGNLI-------NLHHLNNSNTDSLEEMPI--GIGKLTSLQTLCSFVVGKDSGSGLRELKLLK 712 (946)
Q Consensus 644 L~L~~~~~l~--~lp~~i~~L~-------~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~ 712 (946)
|+|++|..+. .+|..+++++ +|++|++++|. +..+|. .++++++|+.|++..+... .+..+..++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~---~lp~~~~L~ 595 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNV 595 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC---BCCCCCTTS
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc---cchhhcCCC
Confidence 9999995244 5898888776 99999999998 679998 8999999999987665443 233666667
Q ss_pred ccCCeeEEecCCCCCCccccccccCCcccc-cCceEEEecCCCCCCCchhhhhHHhHhccCCCC--CCcceEEEeecCCC
Q 043855 713 HLHGTLNISKLENVKCIVDAEEAQLDGKKN-LKVLLLRWTCSTDDSSLREAETEKGVLTMLKPH--KNLEQICISGYGGT 789 (946)
Q Consensus 713 ~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~-L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~ 789 (946)
+|+ .|.+.+..-. .++..+.++++ |+.|+|++|.... ++..+... ++|+.|++++|.+.
T Consensus 596 ~L~-~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~N~L~~------------lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 596 KLT-DLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSHNKLKY------------IPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp EES-EEECCSSCCS-----CCCTTSCEECTTCCEEECCSSCCCS------------CCSCCCTTCSSCEEEEECCSSCTT
T ss_pred cce-EEECcCCccc-----cchHHHhhccccCCEEECcCCCCCc------------CchhhhccccCCCCEEECcCCcCC
Confidence 676 6666554321 45556888888 9999999887654 22333333 34777888777754
Q ss_pred CC----CcCcCCCCCCCccEEEEecCCCCCCCCC--CCCCCCCceeeeccccCceeeCccccCCC--CCCcCCCcceeec
Q 043855 790 EF----PTWLGDFSFSNLVTLKFEDCGMCTSLPS--VGQLPSLKHLVVRRMSRVKRLGSEFYGND--CPIPFLCLETLCF 861 (946)
Q Consensus 790 ~~----p~~~~~~~l~~L~~L~L~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l 861 (946)
.. |..+....+++|+.|+|++|.+. .+|. +..+++|+.|+|++| .+..++...+... ....+++|+.|+|
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred CccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEEC
Confidence 32 22222223457777777777755 4552 346777777777765 3445554433210 0112347777777
Q ss_pred cCCcccccccccCCCCCCC--CCCcccEeeecCCcCccccCCC---CCCCCCEEEEcccc---------cccccCCCCCC
Q 043855 862 EDMREWEDWIPCGSSQGIE--LFPNLREFRILRCPKLQGTLPE---RLPELKMFVIQSCE---------ELLVSVTSLPT 927 (946)
Q Consensus 862 ~~~~~l~~~~~~~~~~~~~--~~p~L~~L~l~~c~~L~~~lp~---~l~~L~~L~i~~c~---------~l~~~l~~l~~ 927 (946)
+++. +..+. . ... .+|+|+.|+|++| +++ .+|. .+++|+.|++++|+ .++..+.++++
T Consensus 736 s~N~-L~~lp-~----~l~~~~l~~L~~L~Ls~N-~L~-~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 736 RFNK-LTSLS-D----DFRATTLPYLSNMDVSYN-CFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp CSSC-CCCCC-G----GGSTTTCTTCCEEECCSS-CCS-SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred CCCC-Cccch-H----HhhhccCCCcCEEEeCCC-CCC-ccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence 7652 33222 1 122 6777777777777 666 3663 46777777776532 22445566777
Q ss_pred ccEEEEcCCCCCCCCCCC
Q 043855 928 LCRFKIGGCKNVPDFFHS 945 (946)
Q Consensus 928 L~~L~l~~c~~l~~lp~~ 945 (946)
|+.|++++| .++.+|.+
T Consensus 808 L~~L~Ls~N-~L~~Ip~~ 824 (876)
T 4ecn_A 808 LIQLQIGSN-DIRKVDEK 824 (876)
T ss_dssp CCEEECCSS-CCCBCCSC
T ss_pred CCEEECCCC-CCCccCHh
Confidence 777777777 34777764
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=5.9e-27 Score=286.14 Aligned_cols=353 Identities=20% Similarity=0.175 Sum_probs=263.4
Q ss_pred cccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCc-cCCcc-ccCCCCCcEEeccCCCcc-ccccchhcC
Q 043855 562 IVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIF-ELPDS-IGELRHLRYLNLSRTLIE-VLPESVNKL 638 (946)
Q Consensus 562 ~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~-~lp~~-i~~l~~Lr~L~Ls~~~i~-~lp~~i~~L 638 (946)
+++|+.|.+.++. +....+..+.++++|++|++++|.+. .+|.. ++++++|++|+|++|.+. .+|..+.++
T Consensus 293 ~~~L~~L~Ls~n~------l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 366 (768)
T 3rgz_A 293 CDTLTGLDLSGNH------FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366 (768)
T ss_dssp CTTCSEEECCSSE------EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH
T ss_pred cCcCCEEECcCCc------CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh
Confidence 4778888877654 33445566678888888888888887 77765 888888888888888887 788888888
Q ss_pred C-CCcEEecCCCCchhhchhhhcc--cCccCeeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccC
Q 043855 639 Y-KLQTLLLEDCDRLKKLCASLGN--LINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLH 715 (946)
Q Consensus 639 ~-~L~~L~L~~~~~l~~lp~~i~~--L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~ 715 (946)
+ +|++|++++|.....+|..+.. +++|++|++++|...+.+|..++.+++|+.|++..+.. .+.....+..+++|+
T Consensus 367 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~~l~~l~~L~ 445 (768)
T 3rgz_A 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL-SGTIPSSLGSLSKLR 445 (768)
T ss_dssp TTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE-ESCCCGGGGGCTTCC
T ss_pred hcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc-cCcccHHHhcCCCCC
Confidence 7 8888888888555667777766 78899999998875557788888899999887655432 122334456666666
Q ss_pred CeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCC-CCCcC
Q 043855 716 GTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGT-EFPTW 794 (946)
Q Consensus 716 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~ 794 (946)
.|.+.... .....+..+..+++|+.|++++|.... ..+..+..+++|+.|++++|.+. .+|.|
T Consensus 446 -~L~L~~n~----l~~~~p~~~~~l~~L~~L~L~~N~l~~-----------~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 446 -DLKLWLNM----LEGEIPQELMYVKTLETLILDFNDLTG-----------EIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp -EEECCSSC----CCSCCCGGGGGCTTCCEEECCSSCCCS-----------CCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred -EEECCCCc----ccCcCCHHHcCCCCceEEEecCCcccC-----------cCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence 66665543 223445567788999999999887664 34556777899999999999977 78998
Q ss_pred cCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceeeeccccCceeeCccccCC--------------------------
Q 043855 795 LGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMSRVKRLGSEFYGN-------------------------- 847 (946)
Q Consensus 795 ~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~-------------------------- 847 (946)
+. .+++|+.|+|++|.+.+.+| .++.+++|+.|+|++|+..+.+|..++..
T Consensus 510 ~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 510 IG--RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp GG--GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred Hh--cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 87 78999999999999887777 58899999999999887655565443221
Q ss_pred --------------------------------------CCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEee
Q 043855 848 --------------------------------------DCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFR 889 (946)
Q Consensus 848 --------------------------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~ 889 (946)
.....+++|+.|+++++.--..+ +..++.+++|+.|+
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i-----p~~l~~l~~L~~L~ 662 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI-----PKEIGSMPYLFILN 662 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC-----CGGGGGCTTCCEEE
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC-----CHHHhccccCCEEe
Confidence 01123567888888876422222 22367899999999
Q ss_pred ecCCcCccccCCC---CCCCCCEEEEcccc---cccccCCCCCCccEEEEcCCCCCCCCCCC
Q 043855 890 ILRCPKLQGTLPE---RLPELKMFVIQSCE---ELLVSVTSLPTLCRFKIGGCKNVPDFFHS 945 (946)
Q Consensus 890 l~~c~~L~~~lp~---~l~~L~~L~i~~c~---~l~~~l~~l~~L~~L~l~~c~~l~~lp~~ 945 (946)
+++| +++|.+|. .+++|+.|++++|. .+|..+.++++|++|++++|+-...+|.+
T Consensus 663 Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 663 LGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CcCC-ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 9999 78888884 57889999999875 33667788999999999999766677753
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.1e-26 Score=278.69 Aligned_cols=314 Identities=13% Similarity=0.104 Sum_probs=238.9
Q ss_pred CCCccCCccccCCCCCcEEeccCCCccc------------------cccchh--cCCCCcEEecCCCCchhhchhhhccc
Q 043855 603 YEIFELPDSIGELRHLRYLNLSRTLIEV------------------LPESVN--KLYKLQTLLLEDCDRLKKLCASLGNL 662 (946)
Q Consensus 603 ~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~i~~L 662 (946)
|.++.+|..|++|++|++|+|++|.++. +|..++ +|++|++|+|++|.....+|..+++|
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4555589999999999999999999998 999988 99999999999997788999999999
Q ss_pred CccCeeecCCCC-Ccc-ccccccCCCC-------CCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccc
Q 043855 663 INLHHLNNSNTD-SLE-EMPIGIGKLT-------SLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAE 733 (946)
Q Consensus 663 ~~L~~L~l~~~~-~~~-~~p~~i~~l~-------~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~ 733 (946)
++|++|++++|. ..+ .+|..+++++ +|+.|++..+..........+.++++|+ .|.+.+..- . .+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~-~L~Ls~N~l----~-~l 588 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG-LLDCVHNKV----R-HL 588 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCC-EEECTTSCC----C-BC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCC-EEECCCCCc----c-cc
Confidence 999999999997 333 5888777666 8999977665543211112466777777 777655432 1 33
Q ss_pred cccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCC-cceEEEeecCCCCCCcCcCCCCCCCccEEEEecCC
Q 043855 734 EAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKN-LEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCG 812 (946)
Q Consensus 734 ~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~ 812 (946)
+ .+..+++|+.|+|++|.... ++..+..+++ |+.|+|++|.+..+|.++.....++|+.|+|++|.
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~~------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIEE------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCSC------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred h-hhcCCCcceEEECcCCcccc------------chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCc
Confidence 3 68889999999999987653 4456777888 99999999999999988874444569999999999
Q ss_pred CCCCCCCCC------CCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCC----CCCCC
Q 043855 813 MCTSLPSVG------QLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQ----GIELF 882 (946)
Q Consensus 813 ~~~~l~~l~------~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~~~ 882 (946)
+.+.+|.+. .+++|+.|+|++|. +..++..++. .+++|+.|+++++. +..+. ..... ....+
T Consensus 656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~-----~l~~L~~L~Ls~N~-L~~ip-~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 656 IGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFA-----TGSPISTIILSNNL-MTSIP-ENSLKPKDGNYKNT 727 (876)
T ss_dssp TTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHH-----TTCCCSEEECCSCC-CSCCC-TTSSSCTTSCCTTG
T ss_pred CCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHc-----cCCCCCEEECCCCc-CCccC-hHHhcccccccccc
Confidence 877666433 45699999999874 5566655432 27899999999763 33332 11000 01234
Q ss_pred CcccEeeecCCcCccccCCC-----CCCCCCEEEEcccc--cccccCCCCCCccEEEEcC------CCCCCCCCCC
Q 043855 883 PNLREFRILRCPKLQGTLPE-----RLPELKMFVIQSCE--ELLVSVTSLPTLCRFKIGG------CKNVPDFFHS 945 (946)
Q Consensus 883 p~L~~L~l~~c~~L~~~lp~-----~l~~L~~L~i~~c~--~l~~~l~~l~~L~~L~l~~------c~~l~~lp~~ 945 (946)
++|+.|++++| +++ .+|. .+++|+.|++++|. .++..+..+++|+.|++++ |.....+|.+
T Consensus 728 ~~L~~L~Ls~N-~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 728 YLLTTIDLRFN-KLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp GGCCEEECCSS-CCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred CCccEEECCCC-CCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 59999999999 888 7883 67899999999875 3456677899999999987 4345566654
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=5.8e-26 Score=271.14 Aligned_cols=379 Identities=16% Similarity=0.087 Sum_probs=230.7
Q ss_pred cccceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccC-CccccC
Q 043855 536 FSQNLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFEL-PDSIGE 614 (946)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~l-p~~i~~ 614 (946)
.+..++++.+..+.... .....+.++++|++|.+.++. +....+..+.++++|++|+|++|.+..+ |..|++
T Consensus 30 ~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCE------IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp SCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCCCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCc------ccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 45677777776543221 112346678889999887764 2222233455888999999999988876 778889
Q ss_pred CCCCcEEeccCCCccccc-cchhcCCCCcEEecCCCCchh--hchhhhcccCccCeeecCCCCCccccc-cccCCCCCCc
Q 043855 615 LRHLRYLNLSRTLIEVLP-ESVNKLYKLQTLLLEDCDRLK--KLCASLGNLINLHHLNNSNTDSLEEMP-IGIGKLTSLQ 690 (946)
Q Consensus 615 l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~ 690 (946)
+.+|++|+|++|.+..+| ..++++++|++|++++| .+. .+|..++++++|++|++++|. +..++ ..++.+++|+
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENP 180 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCT
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccc
Confidence 999999999999888776 67888999999999888 444 478888888999999888887 44443 3344444333
Q ss_pred ---------------------------ccCceecCCC-------------------------------------------
Q 043855 691 ---------------------------TLCSFVVGKD------------------------------------------- 700 (946)
Q Consensus 691 ---------------------------~L~~~~~~~~------------------------------------------- 700 (946)
.|++..+...
T Consensus 181 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred cccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 2221111000
Q ss_pred -----------------------------------CCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCc
Q 043855 701 -----------------------------------SGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKV 745 (946)
Q Consensus 701 -----------------------------------~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~ 745 (946)
....+..+..+++|+ .+.+.++.. ..++ .+ .+++|+.
T Consensus 261 l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~-~L~l~~n~l-----~~lp-~~-~l~~L~~ 332 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQ-SLSIIRCQL-----KQFP-TL-DLPFLKS 332 (606)
T ss_dssp SEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCS-EEEEESCCC-----SSCC-CC-CCSSCCE
T ss_pred ccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCC-EEEcccccC-----cccc-cC-CCCccce
Confidence 000000122222333 333333221 1122 22 5566666
Q ss_pred eEEEecCCCCC------CCch-----hhhh--HHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCC
Q 043855 746 LLLRWTCSTDD------SSLR-----EAET--EKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCG 812 (946)
Q Consensus 746 L~L~~~~~~~~------~~~~-----~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~ 812 (946)
|+++.|..... +... .... .......+..+++|+.|++++|.+..+|..+. .+++|+.|++++|.
T Consensus 333 L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~--~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 333 LTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM--GLEELQHLDFQHST 410 (606)
T ss_dssp EEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCT--TCTTCCEEECTTSE
T ss_pred eeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhcc--CCCCCCeeECCCCc
Confidence 66666522110 0000 0000 00002233456777788887777766776665 67888888888887
Q ss_pred CCCCCC--CCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeee
Q 043855 813 MCTSLP--SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRI 890 (946)
Q Consensus 813 ~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l 890 (946)
+.+..| .++.+++|+.|++++|......+..+ ..+++|+.|+++++.-..... +.....+++|++|++
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~L 480 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF------LGLTSLNTLKMAGNSFKDNTL----SNVFANTTNLTFLDL 480 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT------TTCTTCCEEECTTCEEGGGEE----CSCCTTCTTCCEEEC
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhh------cCCCCCCEEECCCCcCCCcch----HHhhccCCCCCEEEC
Confidence 665544 57788888888888775433333322 237888888888764322111 111467788888888
Q ss_pred cCCcCccccCC---CCCCCCCEEEEcccccc---cccCCCCCCccEEEEcCCCCCCCCCCC
Q 043855 891 LRCPKLQGTLP---ERLPELKMFVIQSCEEL---LVSVTSLPTLCRFKIGGCKNVPDFFHS 945 (946)
Q Consensus 891 ~~c~~L~~~lp---~~l~~L~~L~i~~c~~l---~~~l~~l~~L~~L~l~~c~~l~~lp~~ 945 (946)
++| ++++..| ..+++|+.|++++|... +..+..+++|++|++++| .++.+|.+
T Consensus 481 s~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~ 539 (606)
T 3vq2_A 481 SKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGI 539 (606)
T ss_dssp TTS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESC
T ss_pred CCC-cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHh
Confidence 888 6664444 35678888888887532 456778888888888888 46677754
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=2.1e-26 Score=281.31 Aligned_cols=335 Identities=20% Similarity=0.147 Sum_probs=226.8
Q ss_pred hhhhhcc-cCceeEEEecCCCCc-cCCccccCCCCCcEEeccCCCcc-ccccc-hhcCCCCcEEecCCCCchhhchhhhc
Q 043855 585 VLHQLLR-LQRLRVFSLCGYEIF-ELPDSIGELRHLRYLNLSRTLIE-VLPES-VNKLYKLQTLLLEDCDRLKKLCASLG 660 (946)
Q Consensus 585 ~~~~l~~-~~~Lr~L~L~~~~~~-~lp~~i~~l~~Lr~L~Ls~~~i~-~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~ 660 (946)
++..++. +++|++|++++|.+. .+|..++++++|++|+|++|.+. .+|.. ++++++|++|++++|.....+|..+.
T Consensus 285 ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 364 (768)
T 3rgz_A 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364 (768)
T ss_dssp CCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHH
T ss_pred cCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHH
Confidence 3344443 366666666666655 45566666666666666666665 55554 66666666666666633335666666
Q ss_pred ccC-ccCeeecCCCCCccccccccCC--CCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccC
Q 043855 661 NLI-NLHHLNNSNTDSLEEMPIGIGK--LTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQL 737 (946)
Q Consensus 661 ~L~-~L~~L~l~~~~~~~~~p~~i~~--l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l 737 (946)
+++ +|++|++++|...+.+|..+.. +++|++|.+..+... +.....+.++++|+ .|.+.+.. .....+..+
T Consensus 365 ~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~-~L~Ls~N~----l~~~~p~~l 438 (768)
T 3rgz_A 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-GKIPPTLSNCSELV-SLHLSFNY----LSGTIPSSL 438 (768)
T ss_dssp HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE-EECCGGGGGCTTCC-EEECCSSE----EESCCCGGG
T ss_pred hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc-cccCHHHhcCCCCC-EEECcCCc----ccCcccHHH
Confidence 665 6666666666543445555544 556666654433211 11223445555555 56554432 223445567
Q ss_pred CcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCC-CCCcCcCCCCCCCccEEEEecCCCCCC
Q 043855 738 DGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGT-EFPTWLGDFSFSNLVTLKFEDCGMCTS 816 (946)
Q Consensus 738 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~ 816 (946)
.++++|+.|+++.|.... ..+..+..+++|+.|++++|.+. .+|.++. .+++|+.|+|++|.+.+.
T Consensus 439 ~~l~~L~~L~L~~n~l~~-----------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEG-----------EIPQELMYVKTLETLILDFNDLTGEIPSGLS--NCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp GGCTTCCEEECCSSCCCS-----------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSC
T ss_pred hcCCCCCEEECCCCcccC-----------cCCHHHcCCCCceEEEecCCcccCcCCHHHh--cCCCCCEEEccCCccCCc
Confidence 788889999998886654 34556677899999999999977 6788886 789999999999998878
Q ss_pred CC-CCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccc--c--------------------
Q 043855 817 LP-SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIP--C-------------------- 873 (946)
Q Consensus 817 l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~-------------------- 873 (946)
+| .++.+++|+.|+|++|...+.++..+. .+++|+.|++++++-...+.. .
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~------~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~ 579 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFSGNIPAELG------DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGG------GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEE
T ss_pred CChHHhcCCCCCEEECCCCcccCcCCHHHc------CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccc
Confidence 87 589999999999999876667776653 388999999987642211100 0
Q ss_pred -------------------------------------------CCCCCCCCCCcccEeeecCCcCccccCCC---CCCCC
Q 043855 874 -------------------------------------------GSSQGIELFPNLREFRILRCPKLQGTLPE---RLPEL 907 (946)
Q Consensus 874 -------------------------------------------~~~~~~~~~p~L~~L~l~~c~~L~~~lp~---~l~~L 907 (946)
..+...+.+++|+.|++++| +++|.+|. .+++|
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L 658 (768)
T 3rgz_A 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYL 658 (768)
T ss_dssp CCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCTTC
T ss_pred cccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC-cccccCCHHHhccccC
Confidence 00112345788999999999 78888884 67999
Q ss_pred CEEEEcccc---cccccCCCCCCccEEEEcCCCCCCCCCCC
Q 043855 908 KMFVIQSCE---ELLVSVTSLPTLCRFKIGGCKNVPDFFHS 945 (946)
Q Consensus 908 ~~L~i~~c~---~l~~~l~~l~~L~~L~l~~c~~l~~lp~~ 945 (946)
+.|++++|. .+|..+.++++|++|++++|.-...+|.+
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH
Confidence 999999985 44778889999999999999766688865
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=7.8e-26 Score=269.73 Aligned_cols=339 Identities=17% Similarity=0.166 Sum_probs=254.4
Q ss_pred cccccccceeeccCCCCCCCccchhHH-----------------hhhhhc--ccCceeEEEecCCCCc-cCCccccCCCC
Q 043855 558 NLYDIVCLRTFLPVNLPNSSRGLLAFR-----------------VLHQLL--RLQRLRVFSLCGYEIF-ELPDSIGELRH 617 (946)
Q Consensus 558 ~~~~~~~LrsL~~~~~~~~~~~~~~~~-----------------~~~~l~--~~~~Lr~L~L~~~~~~-~lp~~i~~l~~ 617 (946)
.+.++++|+.|.+.++. +.+. +|..+. ++++|++|++++|.+. .+|..++++++
T Consensus 201 ~l~~l~~L~~L~Ls~n~------l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSP------FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp GGGGCTTCCEEEEESCC------CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred HHhcccCCCEEECcCCc------cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 35678889999888765 2232 788888 9999999999999865 68999999999
Q ss_pred CcEEeccCCC-cc--ccccchhcC------CCCcEEecCCCCchhhchh--hhcccCccCeeecCCCCCccccccccCCC
Q 043855 618 LRYLNLSRTL-IE--VLPESVNKL------YKLQTLLLEDCDRLKKLCA--SLGNLINLHHLNNSNTDSLEEMPIGIGKL 686 (946)
Q Consensus 618 Lr~L~Ls~~~-i~--~lp~~i~~L------~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~i~~l 686 (946)
|++|+|++|. ++ .+|..++++ ++|++|++++| .+..+|. .++++++|++|++++|...+.+| .++.+
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 9999999998 88 489999887 99999999999 6669998 89999999999999998433899 89999
Q ss_pred CCCcccCceecCCCCCCChhccccccc-cCCeeEEecCCCCCCccccccccCCcc--cccCceEEEecCCCCCCCchhhh
Q 043855 687 TSLQTLCSFVVGKDSGSGLRELKLLKH-LHGTLNISKLENVKCIVDAEEAQLDGK--KNLKVLLLRWTCSTDDSSLREAE 763 (946)
Q Consensus 687 ~~L~~L~~~~~~~~~~~~~~~L~~L~~-L~~~L~i~~l~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~~~~~~~ 763 (946)
++|++|.+..+... .....+..++. |+ .|.+.+..-. .++..+..+ ++|+.|+++.|....
T Consensus 353 ~~L~~L~L~~N~l~--~lp~~l~~l~~~L~-~L~Ls~N~l~-----~lp~~~~~~~l~~L~~L~Ls~N~l~~-------- 416 (636)
T 4eco_A 353 IKLASLNLAYNQIT--EIPANFCGFTEQVE-NLSFAHNKLK-----YIPNIFDAKSVSVMSAIDFSYNEIGS-------- 416 (636)
T ss_dssp EEESEEECCSSEEE--ECCTTSEEECTTCC-EEECCSSCCS-----SCCSCCCTTCSSCEEEEECCSSCTTT--------
T ss_pred CCCCEEECCCCccc--cccHhhhhhcccCc-EEEccCCcCc-----ccchhhhhcccCccCEEECcCCcCCC--------
Confidence 99999977554332 12233555666 66 6666554321 233444444 489999999987654
Q ss_pred hHHhHhccCC-------CCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCC--CC-------CCCCCc
Q 043855 764 TEKGVLTMLK-------PHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPS--VG-------QLPSLK 827 (946)
Q Consensus 764 ~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~--l~-------~l~~L~ 827 (946)
..+..+. .+++|+.|++++|.+..+|..+.. .+++|+.|+|++|.+. .+|. +. ++++|+
T Consensus 417 ---~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~-~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 417 ---VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS-TGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp ---TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH-TTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCC
T ss_pred ---cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHc-cCCCCCEEECCCCCCC-CcCHHHhccccccccccCCcc
Confidence 2334444 567999999999999999876542 5799999999999876 5552 22 234999
Q ss_pred eeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCc-----CccccCCC
Q 043855 828 HLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCP-----KLQGTLPE 902 (946)
Q Consensus 828 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~-----~L~~~lp~ 902 (946)
.|+|++|. +..++..+.. ..+++|+.|+++++. +..+. .....+++|+.|++++|. ++.+.+|.
T Consensus 492 ~L~Ls~N~-l~~lp~~~~~----~~l~~L~~L~Ls~N~-l~~ip-----~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 492 SIDLRFNK-LTKLSDDFRA----TTLPYLVGIDLSYNS-FSKFP-----TQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp EEECCSSC-CCBCCGGGST----TTCTTCCEEECCSSC-CSSCC-----CGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred EEECcCCc-CCccChhhhh----ccCCCcCEEECCCCC-CCCcC-----hhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 99999874 5577766541 138999999999864 23222 225679999999996532 44557774
Q ss_pred ---CCCCCCEEEEccccc--ccccCCCCCCccEEEEcCCCC
Q 043855 903 ---RLPELKMFVIQSCEE--LLVSVTSLPTLCRFKIGGCKN 938 (946)
Q Consensus 903 ---~l~~L~~L~i~~c~~--l~~~l~~l~~L~~L~l~~c~~ 938 (946)
.+++|+.|++++|.. ++..+. ++|+.|++++|+-
T Consensus 561 ~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp TGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTT
T ss_pred HHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCC
Confidence 578999999999864 233333 7999999999953
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2.6e-24 Score=247.44 Aligned_cols=343 Identities=16% Similarity=0.186 Sum_probs=241.9
Q ss_pred cceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCCC
Q 043855 538 QNLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRH 617 (946)
Q Consensus 538 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~ 617 (946)
..++.+.+..... ..+..+..+++|+.|.+.++. +. ..++ +.++++|++|++++|.+..++. ++++++
T Consensus 46 ~~l~~L~l~~~~i---~~l~~~~~l~~L~~L~Ls~n~------l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 46 DQVTTLQADRLGI---KSIDGVEYLNNLTQINFSNNQ------LT-DITP-LKNLTKLVDILMNNNQIADITP-LANLTN 113 (466)
T ss_dssp HTCCEEECCSSCC---CCCTTGGGCTTCCEEECCSSC------CC-CCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred ccccEEecCCCCC---ccCcchhhhcCCCEEECCCCc------cC-Cchh-hhccccCCEEECCCCccccChh-hcCCCC
Confidence 4567776654422 234456677888888887654 11 1222 6688888888888888887776 888888
Q ss_pred CcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCceec
Q 043855 618 LRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVV 697 (946)
Q Consensus 618 Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 697 (946)
|++|++++|.+..+|. +.++++|++|++++| .+..+|. +.++++|++|+++++ +..++. ++.+++|+.|++..+
T Consensus 114 L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 114 LTGLTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLDISSN 187 (466)
T ss_dssp CCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEEECCSS
T ss_pred CCEEECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCCEEECcCC
Confidence 8888888888888765 888888888888887 5666654 788888888888643 344443 778888888876554
Q ss_pred CCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCC
Q 043855 698 GKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKN 777 (946)
Q Consensus 698 ~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 777 (946)
... .+..+..+++|+ .|.+.+..-.. .. .+..+++|+.|++++|.... ...+..+++
T Consensus 188 ~l~---~~~~l~~l~~L~-~L~l~~n~l~~----~~--~~~~l~~L~~L~l~~n~l~~-------------~~~l~~l~~ 244 (466)
T 1o6v_A 188 KVS---DISVLAKLTNLE-SLIATNNQISD----IT--PLGILTNLDELSLNGNQLKD-------------IGTLASLTN 244 (466)
T ss_dssp CCC---CCGGGGGCTTCS-EEECCSSCCCC----CG--GGGGCTTCCEEECCSSCCCC-------------CGGGGGCTT
T ss_pred cCC---CChhhccCCCCC-EEEecCCcccc----cc--cccccCCCCEEECCCCCccc-------------chhhhcCCC
Confidence 432 234455666666 66665543211 11 15567888999998876554 134566789
Q ss_pred cceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcc
Q 043855 778 LEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLE 857 (946)
Q Consensus 778 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~ 857 (946)
|+.|++++|.+..++. +. .+++|+.|++++|.+.. ++.++.+++|+.|++++|. +..++. + ..+++|+
T Consensus 245 L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~------~~l~~L~ 312 (466)
T 1o6v_A 245 LTDLDLANNQISNLAP-LS--GLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQ-LEDISP-I------SNLKNLT 312 (466)
T ss_dssp CSEEECCSSCCCCCGG-GT--TCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSC-CSCCGG-G------GGCTTCS
T ss_pred CCEEECCCCccccchh-hh--cCCCCCEEECCCCccCc-cccccCCCccCeEEcCCCc-ccCchh-h------cCCCCCC
Confidence 9999999998877765 43 67899999999988654 4458889999999999874 444332 1 3488999
Q ss_pred eeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCC--CCCCCCCEEEEcccccc-cccCCCCCCccEEEEc
Q 043855 858 TLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLP--ERLPELKMFVIQSCEEL-LVSVTSLPTLCRFKIG 934 (946)
Q Consensus 858 ~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp--~~l~~L~~L~i~~c~~l-~~~l~~l~~L~~L~l~ 934 (946)
.|+++++. +..+. ....+++|+.|++++| +++ .++ ..+++|+.|++++|... ...+..+++|+.|+++
T Consensus 313 ~L~L~~n~-l~~~~------~~~~l~~L~~L~l~~n-~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 313 YLTLYFNN-ISDIS------PVSSLTKLQRLFFYNN-KVS-DVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLN 383 (466)
T ss_dssp EEECCSSC-CSCCG------GGGGCTTCCEEECCSS-CCC-CCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECC
T ss_pred EEECcCCc-CCCch------hhccCccCCEeECCCC-ccC-CchhhccCCCCCEEeCCCCccCccchhhcCCCCCEEecc
Confidence 99999874 33332 1467899999999999 677 455 46899999999988643 1237889999999999
Q ss_pred CCCCCCCCC
Q 043855 935 GCKNVPDFF 943 (946)
Q Consensus 935 ~c~~l~~lp 943 (946)
+| .++.+|
T Consensus 384 ~n-~~~~~p 391 (466)
T 1o6v_A 384 DQ-AWTNAP 391 (466)
T ss_dssp CE-EEECCC
T ss_pred CC-cccCCc
Confidence 98 444444
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=6.1e-24 Score=253.63 Aligned_cols=128 Identities=23% Similarity=0.247 Sum_probs=108.2
Q ss_pred ccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccC-CccccCCCCCcEEeccCCCcccc-ccchhcCCC
Q 043855 563 VCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFEL-PDSIGELRHLRYLNLSRTLIEVL-PESVNKLYK 640 (946)
Q Consensus 563 ~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~ 640 (946)
+.++.|.+.++. +....+..+.++++|++|++++|.++.+ |..|+++++|++|+|++|.++.+ |..|+++++
T Consensus 32 ~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNP------LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCcCEEECCCCC------cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 678999988765 2222233566999999999999999987 56799999999999999999987 888999999
Q ss_pred CcEEecCCCCchhhch-hhhcccCccCeeecCCCCCcc--ccccccCCCCCCcccCceecC
Q 043855 641 LQTLLLEDCDRLKKLC-ASLGNLINLHHLNNSNTDSLE--EMPIGIGKLTSLQTLCSFVVG 698 (946)
Q Consensus 641 L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~~~~~~ 698 (946)
|++|++++| .+..+| ..++++++|++|++++|. +. .+|..++++++|++|++..+.
T Consensus 106 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 106 LENLVAVET-KLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CCEEEccCC-ccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCc
Confidence 999999999 566665 679999999999999998 54 578899999999999776553
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=3.9e-24 Score=255.30 Aligned_cols=367 Identities=13% Similarity=0.098 Sum_probs=211.8
Q ss_pred cccceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccC-CccccC
Q 043855 536 FSQNLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFEL-PDSIGE 614 (946)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~l-p~~i~~ 614 (946)
++..++++.+..+.... -....+.++++|++|.+.++. +....+..+.++++|++|+|++|.+..+ |..|++
T Consensus 31 l~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQ------IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp SCTTCCEEECTTCCCSE-ECTTTSTTCTTCSEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CCCcCcEEEccCCccCc-CChhHhccCccceEEECCCCc------cceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 45677777776543321 123356678889999888764 2232344566888999999999988765 678888
Q ss_pred CCCCcEEeccCCCcccc-ccchhcCCCCcEEecCCCCchhhch-hhhcccCccCeeecCCCCCcccc-ccccCCCCCCc-
Q 043855 615 LRHLRYLNLSRTLIEVL-PESVNKLYKLQTLLLEDCDRLKKLC-ASLGNLINLHHLNNSNTDSLEEM-PIGIGKLTSLQ- 690 (946)
Q Consensus 615 l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L~- 690 (946)
+.+|++|++++|.++.+ |..++++++|++|++++| .+..++ ..+..+++|++|++++|. +..+ |..++.+++|+
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATN 181 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCS
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccce
Confidence 99999999999988877 667888999999999988 555542 334458889999998887 5555 44577788887
Q ss_pred -ccCceecCCCC--CCChhc--c---------------ccccccC-CeeEEecCCCCC----------------------
Q 043855 691 -TLCSFVVGKDS--GSGLRE--L---------------KLLKHLH-GTLNISKLENVK---------------------- 727 (946)
Q Consensus 691 -~L~~~~~~~~~--~~~~~~--L---------------~~L~~L~-~~L~i~~l~~~~---------------------- 727 (946)
.|++..+.... ...+.. + ..+..+. ..+.+..+....
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l 261 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence 44332221110 000000 0 0000000 000000000000
Q ss_pred ---CccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCC-CcCcCCCCCCCc
Q 043855 728 ---CIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEF-PTWLGDFSFSNL 803 (946)
Q Consensus 728 ---~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L 803 (946)
.........+.++++|+.|++++|.... ++..+..+++|+.|++++|.+..+ |..+. .+++|
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L 327 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTATHLSE------------LPSGLVGLSTLKKLVLSANKFENLCQISAS--NFPSL 327 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTTSCCSC------------CCSSCCSCTTCCEEECTTCCCSBGGGGCGG--GCTTC
T ss_pred ecCccCccCHHHhccccCCCEEeccCCccCC------------CChhhcccccCCEEECccCCcCcCchhhhh--ccCcC
Confidence 0111112224455556666665554332 233445556666666666655544 33333 45666
Q ss_pred cEEEEecCCCCCCCC--CCCCCCCCceeeeccccCceee--CccccCCCCCCcCCCcceeeccCCcccccccccCCCCCC
Q 043855 804 VTLKFEDCGMCTSLP--SVGQLPSLKHLVVRRMSRVKRL--GSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGI 879 (946)
Q Consensus 804 ~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 879 (946)
+.|++++|.....+| .++.+++|+.|++++|...... +.. ...+++|+.|+++++.- ..+. +...
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~~~l~~L~~L~l~~n~l-~~~~----~~~~ 396 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ------LRNLSHLQSLNLSYNEP-LSLK----TEAF 396 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT------TTTCTTCCEEECCSCSC-EEEC----TTTT
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh------cccCCCCCEEECCCCcC-CcCC----HHHh
Confidence 666666665554444 2566666666666665322211 111 12367777777776532 2221 1114
Q ss_pred CCCCcccEeeecCCcCccccCC----CCCCCCCEEEEcccccc---cccCCCCCCccEEEEcCCC
Q 043855 880 ELFPNLREFRILRCPKLQGTLP----ERLPELKMFVIQSCEEL---LVSVTSLPTLCRFKIGGCK 937 (946)
Q Consensus 880 ~~~p~L~~L~l~~c~~L~~~lp----~~l~~L~~L~i~~c~~l---~~~l~~l~~L~~L~l~~c~ 937 (946)
..+++|++|++++| ++++..| ..+++|+.|++++|... +..+..+++|++|++++|+
T Consensus 397 ~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 397 KECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred cCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 56788888888887 5553333 24678888888887532 3456778888888888884
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=6.3e-24 Score=244.25 Aligned_cols=319 Identities=20% Similarity=0.263 Sum_probs=199.8
Q ss_pred ccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCC
Q 043855 561 DIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYK 640 (946)
Q Consensus 561 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~ 640 (946)
.++++++|.+.++. + ...+.+..+++|++|++++|.+..+|. ++++.+|++|++++|.+..+|. ++++++
T Consensus 44 ~l~~l~~L~l~~~~------i--~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 44 DLDQVTTLQADRLG------I--KSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTN 113 (466)
T ss_dssp HHHTCCEEECCSSC------C--CCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred HhccccEEecCCCC------C--ccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCC
Confidence 45667777766543 1 112345567777777887777777766 7777778888887777777765 777777
Q ss_pred CcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEE
Q 043855 641 LQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNI 720 (946)
Q Consensus 641 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i 720 (946)
|++|++++| .+..+|. +.++++|++|++++|. +..+| .++.+++|+.|.+.. .. ..+..+.++++|+ .|.+
T Consensus 114 L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~-~~---~~~~~~~~l~~L~-~L~l 184 (466)
T 1o6v_A 114 LTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGN-QV---TDLKPLANLTTLE-RLDI 184 (466)
T ss_dssp CCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEE-SC---CCCGGGTTCTTCC-EEEC
T ss_pred CCEEECCCC-CCCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCC-cc---cCchhhccCCCCC-EEEC
Confidence 888887777 5666655 7777777777777776 55555 367777777776532 11 1223355555555 5655
Q ss_pred ecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCC
Q 043855 721 SKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSF 800 (946)
Q Consensus 721 ~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l 800 (946)
.+..-. . ...+..+++|+.|++++|..... ..+..+++|+.|++++|.+..++. +. .+
T Consensus 185 ~~n~l~-~-----~~~l~~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~l~~n~l~~~~~-l~--~l 242 (466)
T 1o6v_A 185 SSNKVS-D-----ISVLAKLTNLESLIATNNQISDI-------------TPLGILTNLDELSLNGNQLKDIGT-LA--SL 242 (466)
T ss_dssp CSSCCC-C-----CGGGGGCTTCSEEECCSSCCCCC-------------GGGGGCTTCCEEECCSSCCCCCGG-GG--GC
T ss_pred cCCcCC-C-----ChhhccCCCCCEEEecCCccccc-------------ccccccCCCCEEECCCCCcccchh-hh--cC
Confidence 543311 1 12356667777777777655431 113446677777777777666653 32 56
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCC
Q 043855 801 SNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIE 880 (946)
Q Consensus 801 ~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 880 (946)
++|+.|++++|.+.. ++.++.+++|+.|++++|. +..++. + ..+++|+.|+++++. +..+. ...
T Consensus 243 ~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~------~~l~~L~~L~L~~n~-l~~~~------~~~ 306 (466)
T 1o6v_A 243 TNLTDLDLANNQISN-LAPLSGLTKLTELKLGANQ-ISNISP-L------AGLTALTNLELNENQ-LEDIS------PIS 306 (466)
T ss_dssp TTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSC-CCCCGG-G------TTCTTCSEEECCSSC-CSCCG------GGG
T ss_pred CCCCEEECCCCcccc-chhhhcCCCCCEEECCCCc-cCcccc-c------cCCCccCeEEcCCCc-ccCch------hhc
Confidence 777777777777543 3336777777777777653 333332 1 236777777777653 22222 135
Q ss_pred CCCcccEeeecCCcCccccCC-CCCCCCCEEEEcccccc-cccCCCCCCccEEEEcCCC
Q 043855 881 LFPNLREFRILRCPKLQGTLP-ERLPELKMFVIQSCEEL-LVSVTSLPTLCRFKIGGCK 937 (946)
Q Consensus 881 ~~p~L~~L~l~~c~~L~~~lp-~~l~~L~~L~i~~c~~l-~~~l~~l~~L~~L~l~~c~ 937 (946)
.+++|+.|++++| ++++..| ..+++|+.|++++|..- ...+..+++|+.|++++|+
T Consensus 307 ~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 307 NLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECcCC-cCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCc
Confidence 6777777777777 5663333 35677777777776422 2356677777777777774
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=7.1e-24 Score=247.94 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=100.1
Q ss_pred ccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccC-CccccCCCCCcEEeccCCCccccccchhcCCCC
Q 043855 563 VCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFEL-PDSIGELRHLRYLNLSRTLIEVLPESVNKLYKL 641 (946)
Q Consensus 563 ~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L 641 (946)
++|+.|.+.++. +....+..+.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+|.. .+++|
T Consensus 21 ~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNY------ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL 92 (520)
T ss_dssp TTCSEEECCSSC------CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred ccccEEECCCCc------ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence 788999888765 2222334566899999999999999876 67899999999999999999999887 89999
Q ss_pred cEEecCCCCchhh--chhhhcccCccCeeecCCCCCccccccccCCCCCC--cccCceecC
Q 043855 642 QTLLLEDCDRLKK--LCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSL--QTLCSFVVG 698 (946)
Q Consensus 642 ~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~L~~~~~~ 698 (946)
++|++++| .+.. +|..++++++|++|++++|. +.. ..++.+++| +.|.+..+.
T Consensus 93 ~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 93 KHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp SEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECT
T ss_pred cEEeccCC-ccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccc
Confidence 99999999 4543 67889999999999999987 544 346777777 888776554
No 17
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=6.2e-24 Score=242.14 Aligned_cols=299 Identities=18% Similarity=0.126 Sum_probs=201.5
Q ss_pred ccccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchh
Q 043855 557 ENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVN 636 (946)
Q Consensus 557 ~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~ 636 (946)
..+.++++|+.|.+.++. +.. . +.+..+++|++|++++|.++.+| ++++++|++|++++|.++.+| ++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~------l~~-~-~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~ 103 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSS------ITD-M-TGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VT 103 (457)
T ss_dssp EEHHHHTTCCEEECCSSC------CCC-C-TTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred cChhHcCCCCEEEccCCC------ccc-C-hhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cC
Confidence 355678888888887764 211 2 35678899999999999888886 888999999999999988875 88
Q ss_pred cCCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCC
Q 043855 637 KLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHG 716 (946)
Q Consensus 637 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~ 716 (946)
++++|++|++++| .+..+| ++++++|++|++++|. +..++ ++.+++|+.|++..+...... .+..+++|+
T Consensus 104 ~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~- 173 (457)
T 3bz5_A 104 PLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLT- 173 (457)
T ss_dssp TCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCC-
T ss_pred CCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc---ccccCCcCC-
Confidence 8999999999988 666675 7888999999999887 66664 778888888876555332222 344455555
Q ss_pred eeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcC
Q 043855 717 TLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLG 796 (946)
Q Consensus 717 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~ 796 (946)
.|.+....-. . ++ +..+++|+.|++++|.... . .+..+++|+.|++++|.+..+| +.
T Consensus 174 ~L~ls~n~l~-~----l~--l~~l~~L~~L~l~~N~l~~------------~--~l~~l~~L~~L~Ls~N~l~~ip--~~ 230 (457)
T 3bz5_A 174 TLDCSFNKIT-E----LD--VSQNKLLNRLNCDTNNITK------------L--DLNQNIQLTFLDCSSNKLTEID--VT 230 (457)
T ss_dssp EEECCSSCCC-C----CC--CTTCTTCCEEECCSSCCSC------------C--CCTTCTTCSEEECCSSCCSCCC--CT
T ss_pred EEECCCCccc-e----ec--cccCCCCCEEECcCCcCCe------------e--ccccCCCCCEEECcCCcccccC--cc
Confidence 5555443211 1 11 6677888888888876654 1 3566788888888888888877 43
Q ss_pred CCCCCCccEEEEecCCCCCCCCCCCCCCCCceee----------eccccCceeeCccccCCCCCCcCCCcceeeccCCcc
Q 043855 797 DFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLV----------VRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMRE 866 (946)
Q Consensus 797 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~----------L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 866 (946)
.+++|+.|++++|.+.+ +| ++.+++|+.|+ +++|..++.++ ...+++|+.|+++++..
T Consensus 231 --~l~~L~~L~l~~N~l~~-~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--------~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 231 --PLTQLTYFDCSVNPLTE-LD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--------AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp --TCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--------CTTCTTCCCCCCTTCTT
T ss_pred --ccCCCCEEEeeCCcCCC-cC-HHHCCCCCEEeccCCCCCEEECCCCccCCccc--------ccccccCCEEECCCCcc
Confidence 67888888888887654 23 34455555444 44443333332 12367788888877765
Q ss_pred cccccccCC----CCCCCCCCcccEeeecCCcCccccCC-CCCCCCCEEEEccc
Q 043855 867 WEDWIPCGS----SQGIELFPNLREFRILRCPKLQGTLP-ERLPELKMFVIQSC 915 (946)
Q Consensus 867 l~~~~~~~~----~~~~~~~p~L~~L~l~~c~~L~~~lp-~~l~~L~~L~i~~c 915 (946)
+..+. ... ......+|+|+.|++++| ++++ ++ ..+++|+.|+++++
T Consensus 299 l~~l~-~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~-l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 299 LYLLD-CQAAGITELDLSQNPKLVYLYLNNT-ELTE-LDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp CCEEE-CTTCCCSCCCCTTCTTCCEEECTTC-CCSC-CCCTTCTTCSEEECCSS
T ss_pred cceec-cCCCcceEechhhcccCCEEECCCC-cccc-cccccCCcCcEEECCCC
Confidence 54433 110 011345667777777776 5663 44 45677777777664
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=255.38 Aligned_cols=145 Identities=17% Similarity=0.175 Sum_probs=105.3
Q ss_pred cccceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCC-ccccC
Q 043855 536 FSQNLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELP-DSIGE 614 (946)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp-~~i~~ 614 (946)
.+..++++.+..+.... .....+.++++|++|.+.++. +....+..+.++++|++|++++|.++.+| ..|++
T Consensus 26 l~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SCSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccccEEEccCCccCc-cChhHhhCCCCceEEECCCCc------CCccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 45667788776553221 112346678889999888764 22212233558889999999999888765 67889
Q ss_pred CCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchh--hchhhhcccCccCeeecCCCCCccccc-cccCCCCCC
Q 043855 615 LRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLK--KLCASLGNLINLHHLNNSNTDSLEEMP-IGIGKLTSL 689 (946)
Q Consensus 615 l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L 689 (946)
+.+|++|++++|.++.+|. .++++++|++|++++| .+. .+|..++++++|++|++++|. +..++ ..++.+++|
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQM 175 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTC
T ss_pred ccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhcc
Confidence 9999999999998888876 5888999999999988 444 368888899999999999887 54443 446666666
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=2e-24 Score=254.65 Aligned_cols=367 Identities=15% Similarity=0.132 Sum_probs=220.9
Q ss_pred ccceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCcc-ccCC
Q 043855 537 SQNLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDS-IGEL 615 (946)
Q Consensus 537 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~-i~~l 615 (946)
+..++++.+..+.... .....+.++++|++|.+.++. +....+..+.++++|++|++++|.+..+|.. |+++
T Consensus 25 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 25 TAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSR------INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp CTTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred CCCccEEECcCCccCc-cChhhhhcCCcccEEECCCCC------cCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 4567778776653221 112356788899999998764 2222234566899999999999999887754 8999
Q ss_pred CCCcEEeccCCCccc--cccchhcCCCCcEEecCCCCchhhch-hhhcccCccCeeecCCCCCccccccccCCCCCCccc
Q 043855 616 RHLRYLNLSRTLIEV--LPESVNKLYKLQTLLLEDCDRLKKLC-ASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTL 692 (946)
Q Consensus 616 ~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 692 (946)
++|++|+|++|.++. .|..++++++|++|++++|..+..+| ..+.++++|++|++++|......|..++.+++|++|
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 999999999999884 46789999999999999986577776 468899999999999988444567777776666666
Q ss_pred CceecCCCCCCChhccccccccCCeeEEecCCCCC---------------------------------------------
Q 043855 693 CSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVK--------------------------------------------- 727 (946)
Q Consensus 693 ~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~--------------------------------------------- 727 (946)
.+..+...... ......+++|+ .+.+.+..-..
T Consensus 178 ~l~~n~~~~~~-~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 178 TLHLSESAFLL-EIFADILSSVR-YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEECSBSTTHH-HHHHHSTTTBS-EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred ecccCcccccc-hhhHhhccccc-EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 44322110000 00000111111 11111100000
Q ss_pred ------------Ccc----------------------------------------------------ccccccC-Ccccc
Q 043855 728 ------------CIV----------------------------------------------------DAEEAQL-DGKKN 742 (946)
Q Consensus 728 ------------~~~----------------------------------------------------~~~~~~l-~~~~~ 742 (946)
... ..++..+ ..+++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~ 335 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcc
Confidence 000 0000000 12233
Q ss_pred cCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCc---CcCCCCCCCccEEEEecCCCCCCCC-
Q 043855 743 LKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPT---WLGDFSFSNLVTLKFEDCGMCTSLP- 818 (946)
Q Consensus 743 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~---~~~~~~l~~L~~L~L~~~~~~~~l~- 818 (946)
|+.|+++.|.... ........+..+++|+.|++++|.+..+|. .+. .+++|++|++++|.+. .+|
T Consensus 336 L~~L~Ls~N~l~~--------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--~l~~L~~L~Ls~N~l~-~lp~ 404 (549)
T 2z81_A 336 LEFLDLSENLMVE--------EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL--TLKNLTSLDISRNTFH-PMPD 404 (549)
T ss_dssp CCEEECCSSCCCH--------HHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG--GCTTCCEEECTTCCCC-CCCS
T ss_pred ccEEEccCCcccc--------ccccchhhhhccccCcEEEccCCcccccccchhhhh--cCCCCCEEECCCCCCc-cCCh
Confidence 3333333332221 000012234556667777777766655542 232 5667777777777654 344
Q ss_pred CCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccc
Q 043855 819 SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQG 898 (946)
Q Consensus 819 ~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~ 898 (946)
.++.+++|+.|++++|. ++.++.. .+++|+.|+++++. +..+ ...+++|++|++++| +++
T Consensus 405 ~~~~~~~L~~L~Ls~N~-l~~l~~~--------~~~~L~~L~Ls~N~-l~~~--------~~~l~~L~~L~Ls~N-~l~- 464 (549)
T 2z81_A 405 SCQWPEKMRFLNLSSTG-IRVVKTC--------IPQTLEVLDVSNNN-LDSF--------SLFLPRLQELYISRN-KLK- 464 (549)
T ss_dssp CCCCCTTCCEEECTTSC-CSCCCTT--------SCTTCSEEECCSSC-CSCC--------CCCCTTCCEEECCSS-CCS-
T ss_pred hhcccccccEEECCCCC-cccccch--------hcCCceEEECCCCC-hhhh--------cccCChhcEEECCCC-ccC-
Confidence 46666777777777653 3333321 13577777777652 2222 246888999999988 787
Q ss_pred cCCC--CCCCCCEEEEcccccc---cccCCCCCCccEEEEcCCCCCCCCC
Q 043855 899 TLPE--RLPELKMFVIQSCEEL---LVSVTSLPTLCRFKIGGCKNVPDFF 943 (946)
Q Consensus 899 ~lp~--~l~~L~~L~i~~c~~l---~~~l~~l~~L~~L~l~~c~~l~~lp 943 (946)
.+|. .+++|+.|++++|..- +..+..+++|+.|++++|+-....|
T Consensus 465 ~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 465 TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 6774 5788999999887432 2346678889999999887554443
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=2.2e-23 Score=252.32 Aligned_cols=154 Identities=18% Similarity=0.097 Sum_probs=114.8
Q ss_pred cccceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCc-cccC
Q 043855 536 FSQNLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPD-SIGE 614 (946)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~-~i~~ 614 (946)
.+.+++++.+..+.... .....+.++++|++|.+.++. +....+..+.++++|++|+|++|.+..+|. .|++
T Consensus 23 ~~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNT------ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp SCTTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSC------CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCc------cCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 45678888877653322 222346788999999998764 222234445589999999999999998886 5899
Q ss_pred CCCCcEEeccCCCccccc-cchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccc-c--CCCCCCc
Q 043855 615 LRHLRYLNLSRTLIEVLP-ESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIG-I--GKLTSLQ 690 (946)
Q Consensus 615 l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i--~~l~~L~ 690 (946)
+.+|++|+|++|.+..+| ..|+++++|++|++++|......|..+.++++|++|++++|. +..++.. + ..+++|+
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLK 174 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEES
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcccccccc
Confidence 999999999999999886 579999999999999995444456678899999999999987 5555543 2 3457788
Q ss_pred ccCceec
Q 043855 691 TLCSFVV 697 (946)
Q Consensus 691 ~L~~~~~ 697 (946)
.|++..+
T Consensus 175 ~L~L~~n 181 (680)
T 1ziw_A 175 KLELSSN 181 (680)
T ss_dssp EEECTTC
T ss_pred EEECCCC
Confidence 7765443
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.3e-23 Score=250.80 Aligned_cols=110 Identities=18% Similarity=0.144 Sum_probs=61.2
Q ss_pred cccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccC-CccccCCCCCcEEeccCCCccccc-cch
Q 043855 558 NLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFEL-PDSIGELRHLRYLNLSRTLIEVLP-ESV 635 (946)
Q Consensus 558 ~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lp-~~i 635 (946)
.+.++++|++|.+.++. +....+..+.++++|++|++++|.+..+ |..++++++|++|++++|.+..++ ..+
T Consensus 76 ~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 149 (606)
T 3t6q_A 76 TFQSQHRLDTLVLTANP------LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149 (606)
T ss_dssp TTTTCTTCCEEECTTCC------CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTT
T ss_pred hccCccccCeeeCCCCc------ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccc
Confidence 34566667777666553 2122233444666666666666666655 455666666666666666666542 223
Q ss_pred hcCCCCcEEecCCCCchhhc-hhhhcccCccC--eeecCCCC
Q 043855 636 NKLYKLQTLLLEDCDRLKKL-CASLGNLINLH--HLNNSNTD 674 (946)
Q Consensus 636 ~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~--~L~l~~~~ 674 (946)
..+++|++|++++| .+..+ |..+..+++|+ .|++++|.
T Consensus 150 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 150 FPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp CCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred cCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCCc
Confidence 33666666666666 33333 44455555555 55555554
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.2e-23 Score=232.42 Aligned_cols=301 Identities=15% Similarity=0.194 Sum_probs=179.9
Q ss_pred ccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcC
Q 043855 559 LYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKL 638 (946)
Q Consensus 559 ~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L 638 (946)
...+++|++|.+.++.- ...+.+..+++|++|++++|.++.+|. +.++++|++|++++|.++.+| .+.++
T Consensus 40 ~~~l~~L~~L~l~~~~i--------~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l 109 (347)
T 4fmz_A 40 QEELESITKLVVAGEKV--------ASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNL 109 (347)
T ss_dssp HHHHTTCSEEECCSSCC--------CCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred chhcccccEEEEeCCcc--------ccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCC
Confidence 34566677776665431 112335567777777777777776665 677777777777777776664 46777
Q ss_pred CCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCee
Q 043855 639 YKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTL 718 (946)
Q Consensus 639 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L 718 (946)
++|++|++++| .+..+|. +..+++|++|++++|.....++ .++.+++|++|.+..+.... +..
T Consensus 110 ~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~---~~~----------- 172 (347)
T 4fmz_A 110 TNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD---VTP----------- 172 (347)
T ss_dssp TTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC---CGG-----------
T ss_pred CcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC---chh-----------
Confidence 77777777776 5555555 6677777777777775344433 35666666666443322111 111
Q ss_pred EEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCC
Q 043855 719 NISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDF 798 (946)
Q Consensus 719 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 798 (946)
+..+++|+.|++++|.... ...+..+++|+.|++++|.+...+. +.
T Consensus 173 ------------------~~~l~~L~~L~l~~n~l~~-------------~~~~~~l~~L~~L~l~~n~l~~~~~-~~-- 218 (347)
T 4fmz_A 173 ------------------IANLTDLYSLSLNYNQIED-------------ISPLASLTSLHYFTAYVNQITDITP-VA-- 218 (347)
T ss_dssp ------------------GGGCTTCSEEECTTSCCCC-------------CGGGGGCTTCCEEECCSSCCCCCGG-GG--
T ss_pred ------------------hccCCCCCEEEccCCcccc-------------cccccCCCccceeecccCCCCCCch-hh--
Confidence 3445566666666654443 1114455667777777766665554 22
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCC
Q 043855 799 SFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQG 878 (946)
Q Consensus 799 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 878 (946)
.+++|++|++++|.+.. ++.+..+++|+.|++++|. +..++ .+ ..+++|+.|+++++. +.++. .
T Consensus 219 ~~~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~-~~------~~l~~L~~L~l~~n~-l~~~~------~ 282 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTNQ-ISDIN-AV------KDLTKLKMLNVGSNQ-ISDIS------V 282 (347)
T ss_dssp GCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG-GG------TTCTTCCEEECCSSC-CCCCG------G
T ss_pred cCCcCCEEEccCCccCC-CcchhcCCCCCEEECCCCc-cCCCh-hH------hcCCCcCEEEccCCc-cCCCh------h
Confidence 56677777777776433 3336667777777777653 33331 11 236677777777652 22221 1
Q ss_pred CCCCCcccEeeecCCcCccccCC---CCCCCCCEEEEccccccc-ccCCCCCCccEEEEcCCC
Q 043855 879 IELFPNLREFRILRCPKLQGTLP---ERLPELKMFVIQSCEELL-VSVTSLPTLCRFKIGGCK 937 (946)
Q Consensus 879 ~~~~p~L~~L~l~~c~~L~~~lp---~~l~~L~~L~i~~c~~l~-~~l~~l~~L~~L~l~~c~ 937 (946)
...+++|+.|++++| .+++..| ..+++|+.|++++|+... ..+..+++|++|++++|+
T Consensus 283 ~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp GGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred hcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhc
Confidence 356778888888888 5553333 357788888888776331 125678888888888884
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.3e-23 Score=232.17 Aligned_cols=301 Identities=17% Similarity=0.194 Sum_probs=204.2
Q ss_pred ccceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCC
Q 043855 537 SQNLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELR 616 (946)
Q Consensus 537 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~ 616 (946)
...++++.+..... ..+..+..+++|+.|.+.++. +. ..+ .+..+++|++|++++|.+..+| .+.+++
T Consensus 43 l~~L~~L~l~~~~i---~~~~~~~~~~~L~~L~l~~n~------i~-~~~-~~~~l~~L~~L~L~~n~i~~~~-~~~~l~ 110 (347)
T 4fmz_A 43 LESITKLVVAGEKV---ASIQGIEYLTNLEYLNLNGNQ------IT-DIS-PLSNLVKLTNLYIGTNKITDIS-ALQNLT 110 (347)
T ss_dssp HTTCSEEECCSSCC---CCCTTGGGCTTCCEEECCSSC------CC-CCG-GGTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred cccccEEEEeCCcc---ccchhhhhcCCccEEEccCCc------cc-cch-hhhcCCcCCEEEccCCcccCch-HHcCCC
Confidence 45678888776533 234557789999999998764 11 122 2679999999999999999886 599999
Q ss_pred CCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCcee
Q 043855 617 HLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFV 696 (946)
Q Consensus 617 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~ 696 (946)
+|++|++++|.+..+|. +..+++|++|++++|.....++. +..+++|++|++++|. +..++. ++.+++|++|++..
T Consensus 111 ~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 111 NLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNY 186 (347)
T ss_dssp TCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTT
T ss_pred cCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccC
Confidence 99999999999999877 99999999999999966666554 8999999999999998 666655 78888888886543
Q ss_pred cCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCC
Q 043855 697 VGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHK 776 (946)
Q Consensus 697 ~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 776 (946)
+... .+.. +..+++|+.|++++|.... ...+..++
T Consensus 187 n~l~---~~~~-----------------------------~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~ 221 (347)
T 4fmz_A 187 NQIE---DISP-----------------------------LASLTSLHYFTAYVNQITD-------------ITPVANMT 221 (347)
T ss_dssp SCCC---CCGG-----------------------------GGGCTTCCEEECCSSCCCC-------------CGGGGGCT
T ss_pred Cccc---cccc-----------------------------ccCCCccceeecccCCCCC-------------CchhhcCC
Confidence 3211 1111 3344556666666654443 01144566
Q ss_pred CcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCc
Q 043855 777 NLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCL 856 (946)
Q Consensus 777 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L 856 (946)
+|+.|++++|.+..+|. +. .+++|++|++++|.+. .++.+..+++|+.|++++| .+..++. + ..+++|
T Consensus 222 ~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n-~l~~~~~-~------~~l~~L 289 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP-LA--NLSQLTWLEIGTNQIS-DINAVKDLTKLKMLNVGSN-QISDISV-L------NNLSQL 289 (347)
T ss_dssp TCCEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSS-CCCCCGG-G------GGCTTC
T ss_pred cCCEEEccCCccCCCcc-hh--cCCCCCEEECCCCccC-CChhHhcCCCcCEEEccCC-ccCCChh-h------cCCCCC
Confidence 77777777777666665 33 5677777777777643 3456667777777777765 3333321 1 236777
Q ss_pred ceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCC-CCCCCCCEEEEcccc
Q 043855 857 ETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLP-ERLPELKMFVIQSCE 916 (946)
Q Consensus 857 ~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp-~~l~~L~~L~i~~c~ 916 (946)
+.|+++++.- .... +.....+|+|++|++++| .+++..| ..+++|+.|++++|+
T Consensus 290 ~~L~L~~n~l-~~~~----~~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 290 NSLFLNNNQL-GNED----MEVIGGLTNLTTLFLSQN-HITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp SEEECCSSCC-CGGG----HHHHHTCTTCSEEECCSS-SCCCCGGGGGCTTCSEESSSCC-
T ss_pred CEEECcCCcC-CCcC----hhHhhccccCCEEEccCC-ccccccChhhhhccceeehhhhc
Confidence 7777776542 2111 001345778888888887 4663333 457778888777764
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=9.2e-24 Score=248.95 Aligned_cols=325 Identities=18% Similarity=0.196 Sum_probs=202.3
Q ss_pred ccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCccccccc-hhcCCC
Q 043855 563 VCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVLPES-VNKLYK 640 (946)
Q Consensus 563 ~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~ 640 (946)
+.|++|.+.++. +....+..+.++++|++|++++|.+..++ ..|+++.+|++|+|++|.+..+|.. ++++++
T Consensus 26 ~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNK------ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSC------CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCc------cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 679999988765 22223445668999999999999998765 6799999999999999999988765 999999
Q ss_pred CcEEecCCCCchh--hchhhhcccCccCeeecCCCCCcccccc-ccCCCCCCcccCceecCCCCCCChhccccccccCCe
Q 043855 641 LQTLLLEDCDRLK--KLCASLGNLINLHHLNNSNTDSLEEMPI-GIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGT 717 (946)
Q Consensus 641 L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~ 717 (946)
|++|++++| .+. ..|..++++++|++|++++|..++.+|. .++.+++|++|++..+... ......+..+++|+ .
T Consensus 100 L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~-~ 176 (549)
T 2z81_A 100 LKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIH-H 176 (549)
T ss_dssp CCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-EECTTTTTTCSEEE-E
T ss_pred CcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-ccChhhhhccccCc-e
Confidence 999999999 555 3567899999999999999976777774 6899999999987765432 22233444555555 5
Q ss_pred eEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCC-----------ch---------hhhhHHhHhccCCC---
Q 043855 718 LNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSS-----------LR---------EAETEKGVLTMLKP--- 774 (946)
Q Consensus 718 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~-----------~~---------~~~~~~~~~~~l~~--- 774 (946)
+.+...... .. ....+..+++|+.|++++|....... .. ...........+..
T Consensus 177 L~l~~n~~~-~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 177 LTLHLSESA-FL---LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252 (549)
T ss_dssp EEEECSBST-TH---HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred EecccCccc-cc---chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence 666543321 11 11123457899999999987654210 00 00000011111111
Q ss_pred --------------------------------------------------------CCCcceEEEeecCCCCCCcCcCCC
Q 043855 775 --------------------------------------------------------HKNLEQICISGYGGTEFPTWLGDF 798 (946)
Q Consensus 775 --------------------------------------------------------~~~L~~L~l~~~~~~~~p~~~~~~ 798 (946)
.++|+.|++++|.+..+|.++..
T Consensus 253 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~- 331 (549)
T 2z81_A 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ- 331 (549)
T ss_dssp CCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHH-
T ss_pred ccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHh-
Confidence 23566666666666666665421
Q ss_pred CCCCccEEEEecCCCCCCCC----CCCCCCCCceeeeccccCceeeCc--cccCCCCCCcCCCcceeeccCCcccccccc
Q 043855 799 SFSNLVTLKFEDCGMCTSLP----SVGQLPSLKHLVVRRMSRVKRLGS--EFYGNDCPIPFLCLETLCFEDMREWEDWIP 872 (946)
Q Consensus 799 ~l~~L~~L~L~~~~~~~~l~----~l~~l~~L~~L~L~~~~~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 872 (946)
.+++|+.|+|++|.+.+.+| .++.+++|+.|++++|. ++.++. ..+ ..+++|+.|+++++ .+..+.
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~lp- 403 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEIL-----LTLKNLTSLDISRN-TFHPMP- 403 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHG-----GGCTTCCEEECTTC-CCCCCC-
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhh-----hcCCCCCEEECCCC-CCccCC-
Confidence 46778888888887655432 35677788888887753 333321 111 22667777777765 222222
Q ss_pred cCCCCCCCCCCcccEeeecCCcCccccCCCC-CCCCCEEEEccc
Q 043855 873 CGSSQGIELFPNLREFRILRCPKLQGTLPER-LPELKMFVIQSC 915 (946)
Q Consensus 873 ~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~~-l~~L~~L~i~~c 915 (946)
. ....+++|++|++++| +++ .+|.. .++|+.|++++|
T Consensus 404 ~----~~~~~~~L~~L~Ls~N-~l~-~l~~~~~~~L~~L~Ls~N 441 (549)
T 2z81_A 404 D----SCQWPEKMRFLNLSST-GIR-VVKTCIPQTLEVLDVSNN 441 (549)
T ss_dssp S----CCCCCTTCCEEECTTS-CCS-CCCTTSCTTCSEEECCSS
T ss_pred h----hhcccccccEEECCCC-Ccc-cccchhcCCceEEECCCC
Confidence 1 1234555555555555 344 33321 234444444443
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=1.7e-23 Score=246.93 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=83.7
Q ss_pred ccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccC-CccccCCCCCcEEeccCCCccccccchhcCCCC
Q 043855 563 VCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFEL-PDSIGELRHLRYLNLSRTLIEVLPESVNKLYKL 641 (946)
Q Consensus 563 ~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L 641 (946)
++++.|.+.++. +....+..+.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+|.. .+++|
T Consensus 52 ~~L~~L~Ls~N~------i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 52 PRTKALSLSQNS------ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL 123 (562)
T ss_dssp TTCCEEECCSSC------CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred CCcCEEECCCCC------ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence 567777776654 2222233455778888888888887765 56677888888888888888877776 78888
Q ss_pred cEEecCCCCchhhc--hhhhcccCccCeeecCCCCCccccccccCCCCCC--cccCceec
Q 043855 642 QTLLLEDCDRLKKL--CASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSL--QTLCSFVV 697 (946)
Q Consensus 642 ~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~L~~~~~ 697 (946)
++|++++| .+..+ |..++++++|++|++++|. +.. ..++.+++| ++|++..+
T Consensus 124 ~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 124 RHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp SEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEES
T ss_pred CEEECCCC-CccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecc
Confidence 88888887 45554 4677888888888888776 433 234555555 66655443
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=2e-23 Score=244.11 Aligned_cols=138 Identities=15% Similarity=0.175 Sum_probs=106.3
Q ss_pred cccceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCC
Q 043855 536 FSQNLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGEL 615 (946)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l 615 (946)
.+..++++.+..+.... .....+.++++|++|.+.++. +....+..+.++++|++|+|++|.++.+|.. .+
T Consensus 19 ~~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l 89 (520)
T 2z7x_B 19 LSQKTTILNISQNYISE-LWTSDILSLSKLRILIISHNR------IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PT 89 (520)
T ss_dssp CCTTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSC------CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CC
T ss_pred ccccccEEECCCCcccc-cChhhccccccccEEecCCCc------cCCcChHHhhcccCCCEEecCCCceeecCcc--cc
Confidence 34678888887654321 122456789999999998875 3333355667999999999999999999876 89
Q ss_pred CCCcEEeccCCCccc--cccchhcCCCCcEEecCCCCchhhchhhhcccCcc--CeeecCCCCC--ccccccccCC
Q 043855 616 RHLRYLNLSRTLIEV--LPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINL--HHLNNSNTDS--LEEMPIGIGK 685 (946)
Q Consensus 616 ~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--~~~~p~~i~~ 685 (946)
.+|++|+|++|.++. +|..++++++|++|++++| .+.. ..+..+++| ++|++++|.. ....|..++.
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~ 162 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch--hhccccccceeeEEEeecccccccccccccccc
Confidence 999999999999986 5789999999999999998 4443 357778888 9999999874 3444544444
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=247.91 Aligned_cols=371 Identities=16% Similarity=0.122 Sum_probs=230.9
Q ss_pred cceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCc-cccCCC
Q 043855 538 QNLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPD-SIGELR 616 (946)
Q Consensus 538 ~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~-~i~~l~ 616 (946)
...+++.+..+... ......+.++++|++|.+.++. +....+..+.++++|++|++++|.+..+|. .++++.
T Consensus 52 ~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 52 PELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp SSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred CCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCc------CCccCHhhhcCccccccccccccccccCCCccccccc
Confidence 45666666544221 1112345678889999887764 222223345588899999999998888775 688899
Q ss_pred CCcEEeccCCCccc--cccchhcCCCCcEEecCCCCchhhc-hhhhcccCcc----CeeecCCCCCccc-----------
Q 043855 617 HLRYLNLSRTLIEV--LPESVNKLYKLQTLLLEDCDRLKKL-CASLGNLINL----HHLNNSNTDSLEE----------- 678 (946)
Q Consensus 617 ~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L----~~L~l~~~~~~~~----------- 678 (946)
+|++|++++|.+.. +|..++++++|++|++++| .+..+ |..++.+++| ++|++++|. +..
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~~L 202 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRL 202 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCCC-ceecCHHHhccCcc
Confidence 99999999988875 6888889999999999888 44443 4456666665 556665553 211
Q ss_pred -----------------------------------------------------------------------cccccCCCC
Q 043855 679 -----------------------------------------------------------------------MPIGIGKLT 687 (946)
Q Consensus 679 -----------------------------------------------------------------------~p~~i~~l~ 687 (946)
+|..++.++
T Consensus 203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~ 282 (570)
T 2z63_A 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282 (570)
T ss_dssp EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT
T ss_pred eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC
Confidence 122244456
Q ss_pred CCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccc---------------cccccCCcccccCceEEEecC
Q 043855 688 SLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVD---------------AEEAQLDGKKNLKVLLLRWTC 752 (946)
Q Consensus 688 ~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~---------------~~~~~l~~~~~L~~L~L~~~~ 752 (946)
+|++|.+..+.... ....+..+ +|+ .+.+.+..-...... ........+++|+.|+++.|.
T Consensus 283 ~L~~L~l~~~~l~~--l~~~~~~~-~L~-~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 283 NVSSFSLVSVTIER--VKDFSYNF-GWQ-HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp TCSEEEEESCEECS--CCBCCSCC-CCS-EEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred cccEEEecCccchh--hhhhhccC-Ccc-EEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 67766554432211 01112222 333 344433221100000 000001345666666666654
Q ss_pred CCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC--CCCCCCCCceee
Q 043855 753 STDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP--SVGQLPSLKHLV 830 (946)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~ 830 (946)
..... .....+..+++|+.|++++|.+..+|..+. .+++|+.|++++|.+....+ .+..+++|+.|+
T Consensus 359 l~~~~---------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 359 LSFKG---------CCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp CBEEE---------EEEHHHHTCSCCCEEECCSCSEEEEEEEEE--TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred cCccc---------cccccccccCccCEEECCCCcccccccccc--ccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 33200 002234456788888888888777666554 67899999999888765544 578899999999
Q ss_pred eccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCCC---CCCCC
Q 043855 831 VRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLPE---RLPEL 907 (946)
Q Consensus 831 L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~---~l~~L 907 (946)
+++|......+..+ ..+++|+.|+++++.-..... +.....+++|++|++++| ++++..|. .+++|
T Consensus 428 l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~~~~~----p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 428 ISHTHTRVAFNGIF------NGLSSLEVLKMAGNSFQENFL----PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSL 496 (570)
T ss_dssp CTTSCCEECCTTTT------TTCTTCCEEECTTCEEGGGEE----CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred CcCCcccccchhhh------hcCCcCcEEECcCCcCccccc----hhhhhcccCCCEEECCCC-ccccCChhhhhcccCC
Confidence 99875433333222 238899999999875321111 112578999999999999 67744453 57899
Q ss_pred CEEEEcccccc---cccCCCCCCccEEEEcCCCCCCCCC
Q 043855 908 KMFVIQSCEEL---LVSVTSLPTLCRFKIGGCKNVPDFF 943 (946)
Q Consensus 908 ~~L~i~~c~~l---~~~l~~l~~L~~L~l~~c~~l~~lp 943 (946)
+.|++++|..- +..+.++++|++|++++|+-....|
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 99999988532 3357789999999999987655555
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2.1e-23 Score=234.16 Aligned_cols=301 Identities=18% Similarity=0.146 Sum_probs=181.2
Q ss_pred ccccceeeccCCCCCCCccchhHHhhhhhc-ccCceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCccccc-cchhc
Q 043855 561 DIVCLRTFLPVNLPNSSRGLLAFRVLHQLL-RLQRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVLP-ESVNK 637 (946)
Q Consensus 561 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~-~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp-~~i~~ 637 (946)
.+++++.+.+.++. ...++..++ .+++|++|++++|.+..+| ..++++++|++|+|++|.+..+| ..+++
T Consensus 43 ~l~~l~~l~l~~~~-------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGCCCSEEEEESCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCceEEEecCCc-------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 56788888876643 123444443 7899999999999998776 47899999999999999998775 45889
Q ss_pred CCCCcEEecCCCCchhhchhh-hcccCccCeeecCCCCCcccccc-ccCCCCCCcccCceecCCCCCCChhccccccccC
Q 043855 638 LYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLNNSNTDSLEEMPI-GIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLH 715 (946)
Q Consensus 638 L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~ 715 (946)
+++|++|++++| .+..+|.. +.++++|++|++++|. +..++. .++.+++|++|++..+.... .. +..+++|+
T Consensus 116 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~---~~~l~~L~ 189 (390)
T 3o6n_A 116 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLF 189 (390)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB-CC---GGGCTTCS
T ss_pred CCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc-cc---cccccccc
Confidence 999999999998 77788876 4889999999999998 555544 48888889888765443211 11 23333333
Q ss_pred CeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCc
Q 043855 716 GTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWL 795 (946)
Q Consensus 716 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 795 (946)
.+.+....- ..+...++|+.|++++|.... .. ...+++|+.|++++|.+...+ ++
T Consensus 190 -~L~l~~n~l---------~~~~~~~~L~~L~l~~n~l~~------------~~--~~~~~~L~~L~l~~n~l~~~~-~l 244 (390)
T 3o6n_A 190 -HANVSYNLL---------STLAIPIAVEELDASHNSINV------------VR--GPVNVELTILKLQHNNLTDTA-WL 244 (390)
T ss_dssp -EEECCSSCC---------SEEECCSSCSEEECCSSCCCE------------EE--CCCCSSCCEEECCSSCCCCCG-GG
T ss_pred -eeecccccc---------cccCCCCcceEEECCCCeeee------------cc--ccccccccEEECCCCCCcccH-HH
Confidence 333322110 011223456666666554432 00 112345666666666655443 33
Q ss_pred CCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccC
Q 043855 796 GDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCG 874 (946)
Q Consensus 796 ~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 874 (946)
. .+++|++|+|++|.+.+..| .++.+++|+.|+|++| .+..++..+ ..+++|+.|+++++. +..+. .
T Consensus 245 ~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~------~~l~~L~~L~L~~n~-l~~~~-~- 312 (390)
T 3o6n_A 245 L--NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYG------QPIPTLKVLDLSHNH-LLHVE-R- 312 (390)
T ss_dssp G--GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSS------SCCTTCCEEECCSSC-CCCCG-G-
T ss_pred c--CCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCccc------CCCCCCCEEECCCCc-ceecC-c-
Confidence 3 45666666666665544333 4556666666666654 333333221 225566666666542 22221 0
Q ss_pred CCCCCCCCCcccEeeecCCcCccccCC-CCCCCCCEEEEcccc
Q 043855 875 SSQGIELFPNLREFRILRCPKLQGTLP-ERLPELKMFVIQSCE 916 (946)
Q Consensus 875 ~~~~~~~~p~L~~L~l~~c~~L~~~lp-~~l~~L~~L~i~~c~ 916 (946)
....+++|++|++++| .++ .+| ..+++|+.|++++++
T Consensus 313 ---~~~~l~~L~~L~L~~N-~i~-~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 313 ---NQPQFDRLENLYLDHN-SIV-TLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp ---GHHHHTTCSEEECCSS-CCC-CCCCCTTCCCSEEECCSSC
T ss_pred ---cccccCcCCEEECCCC-ccc-eeCchhhccCCEEEcCCCC
Confidence 1234566666666666 444 333 345566666665543
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=251.06 Aligned_cols=361 Identities=16% Similarity=0.157 Sum_probs=207.7
Q ss_pred cccceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHh-hhhhcccCceeEEEecCCCCccC-Ccccc
Q 043855 536 FSQNLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRV-LHQLLRLQRLRVFSLCGYEIFEL-PDSIG 613 (946)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~-~~~l~~~~~Lr~L~L~~~~~~~l-p~~i~ 613 (946)
.+.+++++.+..+... ......+.++++|+.|.+.++. ....+ +..+.++++|++|+|++|.+..+ |..|+
T Consensus 22 lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~------~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQY------TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTC------CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCC------CccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 5567777777655322 1123456678888888887653 11222 33455888888888888888765 77888
Q ss_pred CCCCCcEEeccCCCccc-cccc--hhcCCCCcEEecCCCCchhhc--hhhhcccCccCeeecCCCCCccccccccCCC--
Q 043855 614 ELRHLRYLNLSRTLIEV-LPES--VNKLYKLQTLLLEDCDRLKKL--CASLGNLINLHHLNNSNTDSLEEMPIGIGKL-- 686 (946)
Q Consensus 614 ~l~~Lr~L~Ls~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l-- 686 (946)
++.+|++|+|++|.+.. +|.. +++|++|++|+|++| .+..+ +..++++++|++|++++|......|..++.+
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 88888888888888774 4554 788888888888888 44443 2467888888888888887334444556555
Q ss_pred CCCcccCceecCCCCC--CChhcccc-c--cccCCeeEEecCCCCCCcc-------------------------------
Q 043855 687 TSLQTLCSFVVGKDSG--SGLRELKL-L--KHLHGTLNISKLENVKCIV------------------------------- 730 (946)
Q Consensus 687 ~~L~~L~~~~~~~~~~--~~~~~L~~-L--~~L~~~L~i~~l~~~~~~~------------------------------- 730 (946)
++|+.|.+..+..... ..+..+.+ + ..|+ .+.+....-.....
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CccceEECCCCccccccccchhhcCCccccCcee-EEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 6677765544332111 11111110 0 0122 33332221000000
Q ss_pred -ccccccCCc--ccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCC-CcCcCCCCCCCccEE
Q 043855 731 -DAEEAQLDG--KKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEF-PTWLGDFSFSNLVTL 806 (946)
Q Consensus 731 -~~~~~~l~~--~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L 806 (946)
......+.+ .++|+.|++++|.... .....+..+++|+.|++++|.+..+ |..+. .+++|++|
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L 319 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFS-----------LNSRVFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQVL 319 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCE-----------ECSCCSSSCCCCCEEEEESCCCCEECTTTTT--TCSSCCEE
T ss_pred CCCChhhhhccccCCccEEECCCCcccc-----------cChhhhhcCCCCCEEECCCCcCCCCChHHhc--CCCCCCEE
Confidence 001111222 2566777776654433 1234456677788888887776655 33443 56788888
Q ss_pred EEecCCCCCCCC-CCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcc
Q 043855 807 KFEDCGMCTSLP-SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNL 885 (946)
Q Consensus 807 ~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L 885 (946)
+|++|.+.+..| .++.+++|+.|++++| .+..++...+ ..+++|+.|+++++. +.. ...+|+|
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~-----~~l~~L~~L~Ls~N~-l~~---------i~~~~~L 383 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTF-----KFLEKLQTLDLRDNA-LTT---------IHFIPSI 383 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCS-----CSCCCCCEEEEETCC-SCC---------CSSCCSC
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhh-----cCCCCCCEEECCCCC-CCc---------ccCCCCc
Confidence 888877655444 5777788888888776 3444443322 236777777777643 111 1235666
Q ss_pred cEeeecCCcCccccCCC-------------------------CCCCCCEEEEcccccc----cccCCCCCCccEEEEcCC
Q 043855 886 REFRILRCPKLQGTLPE-------------------------RLPELKMFVIQSCEEL----LVSVTSLPTLCRFKIGGC 936 (946)
Q Consensus 886 ~~L~l~~c~~L~~~lp~-------------------------~l~~L~~L~i~~c~~l----~~~l~~l~~L~~L~l~~c 936 (946)
+.|.+++| +++ .+|. .+++|+.|++++|..- ...+..+++|+.|++++|
T Consensus 384 ~~L~l~~N-~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N 461 (844)
T 3j0a_A 384 PDIFLSGN-KLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461 (844)
T ss_dssp SEEEEESC-CCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred chhccCCC-Ccc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence 66666665 444 4443 3555666666555322 112334566666666666
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=8.4e-23 Score=232.78 Aligned_cols=95 Identities=21% Similarity=0.236 Sum_probs=45.8
Q ss_pred ccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeec
Q 043855 591 RLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNN 670 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 670 (946)
++++|++|++++|.++.+| .++.+++|++|+|++|.++.+| ++.+++|++|++++| .+..+| ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCEEEC
Confidence 4445555555555554444 3445555555555555554443 445555555555554 333332 444555555555
Q ss_pred CCCCCccccccccCCCCCCcccCc
Q 043855 671 SNTDSLEEMPIGIGKLTSLQTLCS 694 (946)
Q Consensus 671 ~~~~~~~~~p~~i~~l~~L~~L~~ 694 (946)
++|. +..+| ++.+++|++|++
T Consensus 114 ~~N~-l~~l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 114 DTNK-LTKLD--VSQNPLLTYLNC 134 (457)
T ss_dssp CSSC-CSCCC--CTTCTTCCEEEC
T ss_pred CCCc-CCeec--CCCCCcCCEEEC
Confidence 5544 33333 444445554443
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.3e-22 Score=233.10 Aligned_cols=352 Identities=13% Similarity=0.064 Sum_probs=239.0
Q ss_pred ccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCc-cC-CccccCCCCCcEEeccCCCcccc-ccchhcCC
Q 043855 563 VCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIF-EL-PDSIGELRHLRYLNLSRTLIEVL-PESVNKLY 639 (946)
Q Consensus 563 ~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~-~l-p~~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~ 639 (946)
++|+.|.+.++. +....+..+.++++|++|++++|.+. .+ |..|+++++|++|+|++|.+..+ |..+++++
T Consensus 30 ~~l~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNS------IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSC------CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CccCEEEecCCc------cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 679999998764 32333556679999999999999886 45 56799999999999999999876 78899999
Q ss_pred CCcEEecCCCCchhhchhh--hcccCccCeeecCCCCCcccc-ccc-cCCCCCCcccCceecCCCCCCChhccccc--cc
Q 043855 640 KLQTLLLEDCDRLKKLCAS--LGNLINLHHLNNSNTDSLEEM-PIG-IGKLTSLQTLCSFVVGKDSGSGLRELKLL--KH 713 (946)
Q Consensus 640 ~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~~~~~-p~~-i~~l~~L~~L~~~~~~~~~~~~~~~L~~L--~~ 713 (946)
+|++|++++|......|.. +.++++|++|++++|. +..+ |.. ++.+++|++|++..+.... .....+..+ .+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~~ 181 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKH 181 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSC-CCTTTSGGGTTCE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccc-cChhhhhcccccc
Confidence 9999999999544445655 8999999999999998 5555 554 7899999999775543321 112223322 22
Q ss_pred cCCeeEEecCCCCCCcc----ccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCC
Q 043855 714 LHGTLNISKLENVKCIV----DAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGT 789 (946)
Q Consensus 714 L~~~L~i~~l~~~~~~~----~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 789 (946)
|+ .+.+.......... ......+..+++|+.|++++|.... . ....+......++|+.|+++++...
T Consensus 182 L~-~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-------~-~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 182 FT-LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-------S-MAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp EE-EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-------H-HHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred cc-ccccccCcccccchhhccccccccccccceeeeEecCCCcccc-------c-chhhhhccccccceeeEeecccccc
Confidence 32 34433322111000 0111234456889999999886553 0 1111112223478999999877532
Q ss_pred CC-------C----cCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcc
Q 043855 790 EF-------P----TWLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLE 857 (946)
Q Consensus 790 ~~-------p----~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~ 857 (946)
.. + ..+.....++|+.|++++|.+.+.+| .++.+++|+.|+|++|. +..++...++ .+++|+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-----~l~~L~ 326 (455)
T 3v47_A 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFW-----GLTHLL 326 (455)
T ss_dssp SCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTT-----TCTTCC
T ss_pred ccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHhc-----CcccCC
Confidence 21 1 01111124689999999999877666 58889999999999875 4444433222 388999
Q ss_pred eeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCC---CCCCCCCEEEEcccccc--c-ccCCCCCCccEE
Q 043855 858 TLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLP---ERLPELKMFVIQSCEEL--L-VSVTSLPTLCRF 931 (946)
Q Consensus 858 ~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp---~~l~~L~~L~i~~c~~l--~-~~l~~l~~L~~L 931 (946)
.|+++++. +..+. +.....+++|++|++++| ++++..| ..+++|+.|++++|..- + ..+..+++|++|
T Consensus 327 ~L~Ls~N~-l~~~~----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 327 KLNLSQNF-LGSID----SRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp EEECCSSC-CCEEC----GGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred EEECCCCc-cCCcC----hhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEE
Confidence 99999863 33332 111467899999999999 6774445 35789999999987532 2 245789999999
Q ss_pred EEcCCCCCCCCC
Q 043855 932 KIGGCKNVPDFF 943 (946)
Q Consensus 932 ~l~~c~~l~~lp 943 (946)
++++|+--..+|
T Consensus 401 ~l~~N~l~~~~~ 412 (455)
T 3v47_A 401 WLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCBCCCTT
T ss_pred EccCCCcccCCC
Confidence 999987655555
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=7.4e-23 Score=242.67 Aligned_cols=301 Identities=18% Similarity=0.151 Sum_probs=197.4
Q ss_pred ccccceeeccCCCCCCCccchhHHhhhhhc-ccCceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCcccccc-chhc
Q 043855 561 DIVCLRTFLPVNLPNSSRGLLAFRVLHQLL-RLQRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVLPE-SVNK 637 (946)
Q Consensus 561 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~-~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~ 637 (946)
.+++++.+.+.++. + ..+++.++ .+++|++|+|++|.+..+| ..|+++.+|++|+|++|.+..+|. .|++
T Consensus 49 ~l~~l~~l~l~~~~------l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNST------M-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSCE------E-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCCC------C-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 46678888776643 1 23445544 7999999999999998776 489999999999999999998865 4799
Q ss_pred CCCCcEEecCCCCchhhchhh-hcccCccCeeecCCCCCcccccc-ccCCCCCCcccCceecCCCCCCChhccccccccC
Q 043855 638 LYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLNNSNTDSLEEMPI-GIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLH 715 (946)
Q Consensus 638 L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~ 715 (946)
+++|++|+|++| .+..+|.. ++++++|++|++++|. +..++. .++.+++|++|++..+... ... +..++.|+
T Consensus 122 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---~~~l~~L~ 195 (597)
T 3oja_B 122 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLF 195 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS-BCC---GGGCTTCS
T ss_pred CCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC-CcC---hhhhhhhh
Confidence 999999999999 67788876 5899999999999998 555554 5889999999976554322 112 23334443
Q ss_pred CeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCc
Q 043855 716 GTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWL 795 (946)
Q Consensus 716 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 795 (946)
.+.+....- ..+....+|+.|++++|.... +.. ..+++|+.|++++|.+... .++
T Consensus 196 -~L~l~~n~l---------~~l~~~~~L~~L~ls~n~l~~------------~~~--~~~~~L~~L~L~~n~l~~~-~~l 250 (597)
T 3oja_B 196 -HANVSYNLL---------STLAIPIAVEELDASHNSINV------------VRG--PVNVELTILKLQHNNLTDT-AWL 250 (597)
T ss_dssp -EEECCSSCC---------SEEECCTTCSEEECCSSCCCE------------EEC--SCCSCCCEEECCSSCCCCC-GGG
T ss_pred -hhhcccCcc---------ccccCCchhheeeccCCcccc------------ccc--ccCCCCCEEECCCCCCCCC-hhh
Confidence 444432210 112334567777777665443 111 1135677777777776553 344
Q ss_pred CCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccC
Q 043855 796 GDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCG 874 (946)
Q Consensus 796 ~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 874 (946)
. .+++|+.|+|++|.+.+..| .++.+++|+.|+|++| .+..++..+ ..+++|+.|+++++. +..+. .
T Consensus 251 ~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~------~~l~~L~~L~Ls~N~-l~~i~-~- 318 (597)
T 3oja_B 251 L--NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYG------QPIPTLKVLDLSHNH-LLHVE-R- 318 (597)
T ss_dssp G--GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSS------SCCTTCCEEECCSSC-CCCCG-G-
T ss_pred c--cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCccc------ccCCCCcEEECCCCC-CCccC-c-
Confidence 3 56777777777777655544 4677777777777765 344443322 236777777777653 22221 1
Q ss_pred CCCCCCCCCcccEeeecCCcCccccCC-CCCCCCCEEEEcccc
Q 043855 875 SSQGIELFPNLREFRILRCPKLQGTLP-ERLPELKMFVIQSCE 916 (946)
Q Consensus 875 ~~~~~~~~p~L~~L~l~~c~~L~~~lp-~~l~~L~~L~i~~c~ 916 (946)
....+++|+.|++++| .++ .+| ..+++|+.|++++|+
T Consensus 319 ---~~~~l~~L~~L~L~~N-~l~-~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 319 ---NQPQFDRLENLYLDHN-SIV-TLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp ---GHHHHTTCSEEECCSS-CCC-CCCCCTTCCCSEEECCSSC
T ss_pred ---ccccCCCCCEEECCCC-CCC-CcChhhcCCCCEEEeeCCC
Confidence 1345677777777777 455 343 456777777776654
No 33
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1e-21 Score=242.47 Aligned_cols=351 Identities=14% Similarity=0.092 Sum_probs=223.9
Q ss_pred ccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCC-CccC-CccccCCCCCcEEeccCCCcccc-ccchhc
Q 043855 561 DIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYE-IFEL-PDSIGELRHLRYLNLSRTLIEVL-PESVNK 637 (946)
Q Consensus 561 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~-~~~l-p~~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~ 637 (946)
-.++++.|.+.++. +....+..+.++++|++|+|++|. +..+ |..|+++++|++|+|++|.+..+ |..|++
T Consensus 22 lp~~l~~LdLs~N~------i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNY------IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEEESCC------CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCcCEEECCCCc------CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 34678999988764 323334556699999999999994 4456 77899999999999999999976 888999
Q ss_pred CCCCcEEecCCCCchhhchhh--hcccCccCeeecCCCCCccccc--cccCCCCCCcccCceecCCCCCCChhccccc--
Q 043855 638 LYKLQTLLLEDCDRLKKLCAS--LGNLINLHHLNNSNTDSLEEMP--IGIGKLTSLQTLCSFVVGKDSGSGLRELKLL-- 711 (946)
Q Consensus 638 L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L-- 711 (946)
+++|++|+|++|.....+|.. +.++++|++|++++|. +..++ ..++++++|++|++..+... ......+..+
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~-~~~~~~l~~l~~ 173 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQG 173 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCC-CCCSGGGHHHHH
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCC-eeCHHHcccccC
Confidence 999999999999544446665 8999999999999998 55543 45899999999977654432 2223344444
Q ss_pred cccCCeeEEecCCCCCCccccccccCCccc------ccCceEEEecCCCCCCCchhhhhH--------------------
Q 043855 712 KHLHGTLNISKLENVKCIVDAEEAQLDGKK------NLKVLLLRWTCSTDDSSLREAETE-------------------- 765 (946)
Q Consensus 712 ~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~------~L~~L~L~~~~~~~~~~~~~~~~~-------------------- 765 (946)
++|+ .+.+....-. ...+..+..+. .|+.|++++|..............
T Consensus 174 ~~L~-~L~L~~n~l~----~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 174 KTLS-FFSLAANSLY----SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp CSSC-CCEECCSBSC----CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred Cccc-eEECCCCccc----cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 4555 5555443211 11222233333 499999998755431110000000
Q ss_pred -----HhHhccCCC--CCCcceEEEeecCCCCC-CcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceeeeccccC
Q 043855 766 -----KGVLTMLKP--HKNLEQICISGYGGTEF-PTWLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMSR 836 (946)
Q Consensus 766 -----~~~~~~l~~--~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~ 836 (946)
......+.. +++|+.|++++|.+..+ |..+. .+++|+.|+|++|.+....| .++.+++|+.|+|++|.
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~- 325 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL- 325 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhh--cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-
Confidence 000001111 25777888877776554 33443 67788888888877655444 57777888888887764
Q ss_pred ceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCCCCCCCCCEEEEcccc
Q 043855 837 VKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLPERLPELKMFVIQSCE 916 (946)
Q Consensus 837 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~~l~~L~~L~i~~c~ 916 (946)
+..+....+ ..+++|+.|+++++. +..+. ......+++|+.|++++| .++ .++. +++|+.|++++|.
T Consensus 326 l~~~~~~~~-----~~l~~L~~L~L~~N~-i~~~~----~~~~~~l~~L~~L~Ls~N-~l~-~i~~-~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 326 LGELYSSNF-----YGLPKVAYIDLQKNH-IAIIQ----DQTFKFLEKLQTLDLRDN-ALT-TIHF-IPSIPDIFLSGNK 392 (844)
T ss_dssp CSCCCSCSC-----SSCTTCCEEECCSCC-CCCCC----SSCSCSCCCCCEEEEETC-CSC-CCSS-CCSCSEEEEESCC
T ss_pred CCccCHHHh-----cCCCCCCEEECCCCC-CCccC----hhhhcCCCCCCEEECCCC-CCC-cccC-CCCcchhccCCCC
Confidence 333322221 237778888887652 33222 111456778888888887 566 4554 7778888887764
Q ss_pred cccccCCCCCCccEEEEcCCCCCCCC
Q 043855 917 ELLVSVTSLPTLCRFKIGGCKNVPDF 942 (946)
Q Consensus 917 ~l~~~l~~l~~L~~L~l~~c~~l~~l 942 (946)
.. .......+++.|++++| .++.+
T Consensus 393 l~-~l~~~~~~l~~L~ls~N-~l~~l 416 (844)
T 3j0a_A 393 LV-TLPKINLTANLIHLSEN-RLENL 416 (844)
T ss_dssp CC-CCCCCCTTCCEEECCSC-CCCSS
T ss_pred cc-cccccccccceeecccC-ccccC
Confidence 32 22223556788888776 44443
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.5e-22 Score=227.27 Aligned_cols=301 Identities=16% Similarity=0.137 Sum_probs=228.1
Q ss_pred ccCceeEEEecCCCCccCCcc-ccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhc-hhhhcccCccCe
Q 043855 591 RLQRLRVFSLCGYEIFELPDS-IGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKL-CASLGNLINLHH 667 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp~~-i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~ 667 (946)
.+++|++|+++++.+..+|.. +.++++|++|+|++|.+..+|. .+..+++|++|++++| .+..+ |..+.++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 568899999999999998865 5889999999999999998765 7999999999999999 55555 455899999999
Q ss_pred eecCCCCCccccccc-cCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCce
Q 043855 668 LNNSNTDSLEEMPIG-IGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVL 746 (946)
Q Consensus 668 L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 746 (946)
|++++|. +..+|.. ++.+++|++|++..+... ......+..+++|+ .|.+.+..-.. ..+..+++|+.|
T Consensus 122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~-~L~l~~n~l~~-------~~~~~l~~L~~L 191 (390)
T 3o6n_A 122 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ-NLQLSSNRLTH-------VDLSLIPSLFHA 191 (390)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCC-EEECCSSCCSB-------CCGGGCTTCSEE
T ss_pred EECCCCc-cCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCC-EEECCCCcCCc-------ccccccccccee
Confidence 9999997 7888877 488999999977655432 22223355566666 66665433211 125567889999
Q ss_pred EEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCC
Q 043855 747 LLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSL 826 (946)
Q Consensus 747 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 826 (946)
++++|.... +..+++|+.|++++|.+..+|... +++|+.|++++|.+.+ ++.++.+++|
T Consensus 192 ~l~~n~l~~----------------~~~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~n~l~~-~~~l~~l~~L 250 (390)
T 3o6n_A 192 NVSYNLLST----------------LAIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTD-TAWLLNYPGL 250 (390)
T ss_dssp ECCSSCCSE----------------EECCSSCSEEECCSSCCCEEECCC----CSSCCEEECCSSCCCC-CGGGGGCTTC
T ss_pred ecccccccc----------------cCCCCcceEEECCCCeeeeccccc----cccccEEECCCCCCcc-cHHHcCCCCc
Confidence 998864432 344578999999999988777644 4789999999998654 5778889999
Q ss_pred ceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCCC---C
Q 043855 827 KHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLPE---R 903 (946)
Q Consensus 827 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~---~ 903 (946)
+.|++++|......+..+ . .+++|+.|+++++. +..+. .. ...+|+|++|++++| +++ .+|. .
T Consensus 251 ~~L~Ls~n~l~~~~~~~~-~-----~l~~L~~L~L~~n~-l~~~~-~~----~~~l~~L~~L~L~~n-~l~-~~~~~~~~ 316 (390)
T 3o6n_A 251 VEVDLSYNELEKIMYHPF-V-----KMQRLERLYISNNR-LVALN-LY----GQPIPTLKVLDLSHN-HLL-HVERNQPQ 316 (390)
T ss_dssp SEEECCSSCCCEEESGGG-T-----TCSSCCEEECCSSC-CCEEE-CS----SSCCTTCCEEECCSS-CCC-CCGGGHHH
T ss_pred cEEECCCCcCCCcChhHc-c-----ccccCCEEECCCCc-CcccC-cc----cCCCCCCCEEECCCC-cce-ecCccccc
Confidence 999999875333333333 2 38899999999853 33332 11 357899999999999 777 6764 4
Q ss_pred CCCCCEEEEcccccccccCCCCCCccEEEEcCCC
Q 043855 904 LPELKMFVIQSCEELLVSVTSLPTLCRFKIGGCK 937 (946)
Q Consensus 904 l~~L~~L~i~~c~~l~~~l~~l~~L~~L~l~~c~ 937 (946)
+++|+.|++++|......+..+++|+.|++++|+
T Consensus 317 l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 317 FDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp HTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred cCcCCEEECCCCccceeCchhhccCCEEEcCCCC
Confidence 6899999999987655567889999999999986
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=2.7e-22 Score=230.39 Aligned_cols=352 Identities=14% Similarity=0.123 Sum_probs=237.5
Q ss_pred cccceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhh-hhhcccCceeEEEecCCCCccC-Ccccc
Q 043855 536 FSQNLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVL-HQLLRLQRLRVFSLCGYEIFEL-PDSIG 613 (946)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~-~~l~~~~~Lr~L~L~~~~~~~l-p~~i~ 613 (946)
.+..++++.+..+... ......+.++++|+.|.+.++. +...++ ..+.++++|++|+|++|.+..+ |..|+
T Consensus 28 l~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~------~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQT------PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp CCTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCS------TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred CCCccCEEEecCCccC-cCChhHhccCccccEEECcCCc------ccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 4567888887765332 1123456789999999998764 222332 3355899999999999999875 78899
Q ss_pred CCCCCcEEeccCCCccc-cccc--hhcCCCCcEEecCCCCchhhc-hhh-hcccCccCeeecCCCCCccccccccCCC--
Q 043855 614 ELRHLRYLNLSRTLIEV-LPES--VNKLYKLQTLLLEDCDRLKKL-CAS-LGNLINLHHLNNSNTDSLEEMPIGIGKL-- 686 (946)
Q Consensus 614 ~l~~Lr~L~Ls~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l-- 686 (946)
++.+|++|+|++|.++. +|.. +.++++|++|++++| .+..+ |.. +.++++|++|++++|......|..++.+
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 179 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG 179 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTT
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccc
Confidence 99999999999999985 4554 999999999999999 45555 655 8999999999999998444445556655
Q ss_pred CCCcccCceecCCCCCC--Ch-----hccccccccCCeeEEecCCCCCCccccccccC---CcccccCceEEEecCCCCC
Q 043855 687 TSLQTLCSFVVGKDSGS--GL-----RELKLLKHLHGTLNISKLENVKCIVDAEEAQL---DGKKNLKVLLLRWTCSTDD 756 (946)
Q Consensus 687 ~~L~~L~~~~~~~~~~~--~~-----~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l---~~~~~L~~L~L~~~~~~~~ 756 (946)
.+|+.|.+..+...... .+ ..+..+++|+ .|++.+..- ....+..+ ...++|+.|.++.|.....
T Consensus 180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT-TLDLSGNGF----KESMAKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEE-EEECTTSCC----CHHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred ccccccccccCcccccchhhccccccccccccceee-eEecCCCcc----cccchhhhhccccccceeeEeecccccccc
Confidence 56666654433222111 00 1122334454 555544331 11122222 2237899999987643321
Q ss_pred CCchhhhhHHhHhccCC--CCCCcceEEEeecCCCCC-CcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceeeec
Q 043855 757 SSLREAETEKGVLTMLK--PHKNLEQICISGYGGTEF-PTWLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVR 832 (946)
Q Consensus 757 ~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~ 832 (946)
.... ..........+. .+++|+.|++++|.+... |.++. .+++|++|+|++|.+.+..| .++.+++|+.|+|+
T Consensus 255 ~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 255 SFGH-TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331 (455)
T ss_dssp CTTC-CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred ccch-hhhccCcccccccccccCceEEEecCccccccchhhcc--cCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence 0000 000000000111 246899999999987754 66665 78999999999999876655 68899999999999
Q ss_pred cccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCC----CCCCCCC
Q 043855 833 RMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLP----ERLPELK 908 (946)
Q Consensus 833 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp----~~l~~L~ 908 (946)
+|. +..++...++ .+++|+.|+++++. +..+. +.....+++|++|++++| +++ .+| ..+++|+
T Consensus 332 ~N~-l~~~~~~~~~-----~l~~L~~L~Ls~N~-l~~~~----~~~~~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 332 QNF-LGSIDSRMFE-----NLDKLEVLDLSYNH-IRALG----DQSFLGLPNLKELALDTN-QLK-SVPDGIFDRLTSLQ 398 (455)
T ss_dssp SSC-CCEECGGGGT-----TCTTCCEEECCSSC-CCEEC----TTTTTTCTTCCEEECCSS-CCS-CCCTTTTTTCTTCC
T ss_pred CCc-cCCcChhHhc-----CcccCCEEECCCCc-ccccC----hhhccccccccEEECCCC-ccc-cCCHhHhccCCccc
Confidence 874 5555444333 38999999999874 33332 122578999999999999 788 566 3578999
Q ss_pred EEEEcccc
Q 043855 909 MFVIQSCE 916 (946)
Q Consensus 909 ~L~i~~c~ 916 (946)
.|++++++
T Consensus 399 ~L~l~~N~ 406 (455)
T 3v47_A 399 KIWLHTNP 406 (455)
T ss_dssp EEECCSSC
T ss_pred EEEccCCC
Confidence 99998764
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=7.4e-22 Score=232.79 Aligned_cols=128 Identities=18% Similarity=0.177 Sum_probs=99.5
Q ss_pred cccceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCC
Q 043855 536 FSQNLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGEL 615 (946)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l 615 (946)
.+..++++.+..+.... .....+.++++|+.|.+.++. +....+..+.++++|++|+|++|.++.+|.. .+
T Consensus 50 ~~~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l 120 (562)
T 3a79_B 50 LPPRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNR------IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PM 120 (562)
T ss_dssp SCTTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCC------CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CC
T ss_pred CCCCcCEEECCCCCccc-cChhhhccCCCccEEECCCCC------CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cc
Confidence 34677888877654322 222467789999999998775 2222344566899999999999999999987 89
Q ss_pred CCCcEEeccCCCccccc--cchhcCCCCcEEecCCCCchhhchhhhcccCcc--CeeecCCCCC
Q 043855 616 RHLRYLNLSRTLIEVLP--ESVNKLYKLQTLLLEDCDRLKKLCASLGNLINL--HHLNNSNTDS 675 (946)
Q Consensus 616 ~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~ 675 (946)
.+|++|+|++|.+..+| ..++++++|++|++++| .+.. ..+..+++| ++|++++|..
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCC-cccc--CchhhhhhceeeEEEeecccc
Confidence 99999999999999764 78999999999999998 4443 345666666 9999999874
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.1e-21 Score=226.51 Aligned_cols=290 Identities=21% Similarity=0.207 Sum_probs=188.2
Q ss_pred CceeEEEecCCCCccC-CccccCCCCCcEEeccCCCcccc-ccchhcCCCCcEEecCCCCchhhchhh-hcccCccCeee
Q 043855 593 QRLRVFSLCGYEIFEL-PDSIGELRHLRYLNLSRTLIEVL-PESVNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLN 669 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 669 (946)
+.|++|+|++|.++.+ |..|.++++|++|+|++|.+..+ |..|.++++|++|+|++| .+..+|.. +.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence 5799999999999987 46899999999999999999977 778999999999999998 67788765 78999999999
Q ss_pred cCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEE
Q 043855 670 NSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLR 749 (946)
Q Consensus 670 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 749 (946)
+++|......|..+..+++|++|.+..+... ......+..+++|+ .|.+.+..- .......+.++++|+.|+|+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~-~L~l~~n~l----~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLE-QLTLEKCNL----TSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCC-EEEEESCCC----SSCCHHHHTTCTTCCEEEEE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCC-EEECCCCcC----cccChhHhcccCCCcEEeCC
Confidence 9999844444556888999999876554321 11122344445555 555554321 11222345666777777777
Q ss_pred ecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecC-CCCCCcCcCCCCCCCccEEEEecCCCCCCCC--CCCCCCCC
Q 043855 750 WTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYG-GTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP--SVGQLPSL 826 (946)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L 826 (946)
+|.... .....+..+++|+.|++++|. ...+|.... ...+|++|+|++|.+. .+| .++.+++|
T Consensus 185 ~n~i~~-----------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L 250 (477)
T 2id5_A 185 HLNINA-----------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCL--YGLNLTSLSITHCNLT-AVPYLAVRHLVYL 250 (477)
T ss_dssp SCCCCE-----------ECTTCSCSCTTCCEEEEECCTTCCEECTTTT--TTCCCSEEEEESSCCC-SCCHHHHTTCTTC
T ss_pred CCcCcE-----------eChhhcccCcccceeeCCCCccccccCcccc--cCccccEEECcCCccc-ccCHHHhcCcccc
Confidence 765443 112345566777777777765 233444433 3347777777777644 344 36667777
Q ss_pred ceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCC----C
Q 043855 827 KHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLP----E 902 (946)
Q Consensus 827 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp----~ 902 (946)
+.|+|++|. +..++...+. .+++|+.|+++++. +..+. +.....+++|+.|++++| +++ .+| .
T Consensus 251 ~~L~Ls~n~-l~~~~~~~~~-----~l~~L~~L~L~~n~-l~~~~----~~~~~~l~~L~~L~L~~N-~l~-~~~~~~~~ 317 (477)
T 2id5_A 251 RFLNLSYNP-ISTIEGSMLH-----ELLRLQEIQLVGGQ-LAVVE----PYAFRGLNYLRVLNVSGN-QLT-TLEESVFH 317 (477)
T ss_dssp CEEECCSSC-CCEECTTSCT-----TCTTCCEEECCSSC-CSEEC----TTTBTTCTTCCEEECCSS-CCS-CCCGGGBS
T ss_pred CeeECCCCc-CCccChhhcc-----ccccCCEEECCCCc-cceEC----HHHhcCcccCCEEECCCC-cCc-eeCHhHcC
Confidence 777777653 4444433222 26677777777642 22221 111456677777777777 566 444 2
Q ss_pred CCCCCCEEEEcccc
Q 043855 903 RLPELKMFVIQSCE 916 (946)
Q Consensus 903 ~l~~L~~L~i~~c~ 916 (946)
.+++|+.|++++++
T Consensus 318 ~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 318 SVGNLETLILDSNP 331 (477)
T ss_dssp CGGGCCEEECCSSC
T ss_pred CCcccCEEEccCCC
Confidence 45667777776543
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=9.5e-22 Score=237.94 Aligned_cols=129 Identities=19% Similarity=0.106 Sum_probs=105.7
Q ss_pred ccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccC-CccccCCCCCcEEeccCCCcccccc-chhcCCC
Q 043855 563 VCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFEL-PDSIGELRHLRYLNLSRTLIEVLPE-SVNKLYK 640 (946)
Q Consensus 563 ~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~ 640 (946)
++++.|.+.++. +....+..+.++++|++|++++|.+..+ |..++++++|++|+|++|.++.+|. .|+++++
T Consensus 25 ~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHNQ------LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSSC------CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCCCC------CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 578999888764 2222233466899999999999999876 6778999999999999999999987 5999999
Q ss_pred CcEEecCCCCchhhch-hhhcccCccCeeecCCCCCccccccccCCCCCCcccCceecC
Q 043855 641 LQTLLLEDCDRLKKLC-ASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVG 698 (946)
Q Consensus 641 L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~ 698 (946)
|++|++++| .+..+| ..++++++|++|++++|......|..++++++|++|++..+.
T Consensus 99 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 156 (680)
T 1ziw_A 99 LTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156 (680)
T ss_dssp CSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred CCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence 999999999 566665 579999999999999998444445568899999999776543
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.8e-22 Score=236.49 Aligned_cols=301 Identities=16% Similarity=0.137 Sum_probs=202.0
Q ss_pred ccCceeEEEecCCCCccCCcc-ccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhchh-hhcccCccCe
Q 043855 591 RLQRLRVFSLCGYEIFELPDS-IGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKLCA-SLGNLINLHH 667 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp~~-i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~ 667 (946)
.+.++++|++++|.+..+|.. ++++++|++|+|++|.+..+|. .|+.+++|++|+|++| .+..+|. .++++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence 456788888888888877754 5778888888888888887654 7888888888888887 4555544 4678888888
Q ss_pred eecCCCCCccccccc-cCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCce
Q 043855 668 LNNSNTDSLEEMPIG-IGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVL 746 (946)
Q Consensus 668 L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 746 (946)
|++++|. +..+|.. ++.+++|++|++..+... ......+..+++|+ .|.+.+..-. . ..+..+++|+.|
T Consensus 128 L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~-~L~L~~N~l~----~---~~~~~l~~L~~L 197 (597)
T 3oja_B 128 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ-NLQLSSNRLT----H---VDLSLIPSLFHA 197 (597)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCC-EEECTTSCCS----B---CCGGGCTTCSEE
T ss_pred EEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCc-EEECcCCCCC----C---cChhhhhhhhhh
Confidence 8888887 6677766 477888888876554332 22222344555555 5555443211 0 124456778888
Q ss_pred EEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCC
Q 043855 747 LLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSL 826 (946)
Q Consensus 747 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 826 (946)
++++|... .+..+++|+.|++++|.+..+|..+ .++|+.|+|++|.+.+ ++.++.+++|
T Consensus 198 ~l~~n~l~----------------~l~~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l~~-~~~l~~l~~L 256 (597)
T 3oja_B 198 NVSYNLLS----------------TLAIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTD-TAWLLNYPGL 256 (597)
T ss_dssp ECCSSCCS----------------EEECCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCCCC-CGGGGGCTTC
T ss_pred hcccCccc----------------cccCCchhheeeccCCccccccccc----CCCCCEEECCCCCCCC-ChhhccCCCC
Confidence 88776433 2334567888888888777666544 3678888888887544 4667778888
Q ss_pred ceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCCC---C
Q 043855 827 KHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLPE---R 903 (946)
Q Consensus 827 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~---~ 903 (946)
+.|+|++|......+..+ + .+++|+.|+++++. +..+. .. ...+|+|+.|++++| .++ .+|. .
T Consensus 257 ~~L~Ls~N~l~~~~~~~~-~-----~l~~L~~L~Ls~N~-l~~l~-~~----~~~l~~L~~L~Ls~N-~l~-~i~~~~~~ 322 (597)
T 3oja_B 257 VEVDLSYNELEKIMYHPF-V-----KMQRLERLYISNNR-LVALN-LY----GQPIPTLKVLDLSHN-HLL-HVERNQPQ 322 (597)
T ss_dssp SEEECCSSCCCEEESGGG-T-----TCSSCCEEECTTSC-CCEEE-CS----SSCCTTCCEEECCSS-CCC-CCGGGHHH
T ss_pred CEEECCCCccCCCCHHHh-c-----CccCCCEEECCCCC-CCCCC-cc----cccCCCCcEEECCCC-CCC-ccCccccc
Confidence 888888765333333333 2 27788888888753 33332 11 356788888888888 666 5663 4
Q ss_pred CCCCCEEEEcccccccccCCCCCCccEEEEcCCC
Q 043855 904 LPELKMFVIQSCEELLVSVTSLPTLCRFKIGGCK 937 (946)
Q Consensus 904 l~~L~~L~i~~c~~l~~~l~~l~~L~~L~l~~c~ 937 (946)
+++|+.|++++|......+..+++|+.|++++|+
T Consensus 323 l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 323 FDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp HTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred CCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 6788888888876554556778888888888875
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=224.71 Aligned_cols=295 Identities=17% Similarity=0.109 Sum_probs=211.7
Q ss_pred ccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccC-CccccCCCCCcEEeccCCCccccccc-hhcCCC
Q 043855 563 VCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFEL-PDSIGELRHLRYLNLSRTLIEVLPES-VNKLYK 640 (946)
Q Consensus 563 ~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~ 640 (946)
+.++.|.+.++. +....+..+.++++|++|+|++|.+..+ |..|+++++|++|+|++|.++.+|.. +.++++
T Consensus 32 ~~l~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKNR------IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp TTCSEEECCSSC------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCcEEECCCCc------cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 467888877654 2222234456889999999999998876 67899999999999999999988764 788999
Q ss_pred CcEEecCCCCchhhchhhhcccCccCeeecCCCCCcccc-ccccCCCCCCcccCceecCCCCCCChhccccccccCCeeE
Q 043855 641 LQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEM-PIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLN 719 (946)
Q Consensus 641 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~ 719 (946)
|++|+|++|......|..+.++++|++|++++|. +..+ |..++.+++|++|++..+... ......+..+++|+ .|.
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~-~L~ 182 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLI-VLR 182 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCC-EEE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCc-EEe
Confidence 9999999984444456678899999999999987 5444 456888999999877655332 22233456666666 677
Q ss_pred EecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcC-cCCC
Q 043855 720 ISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTW-LGDF 798 (946)
Q Consensus 720 i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~ 798 (946)
+..... .......+..+++|+.|++++|.... ..........+|+.|++++|.+..+|.. +.
T Consensus 183 l~~n~i----~~~~~~~~~~l~~L~~L~l~~~~~~~-----------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-- 245 (477)
T 2id5_A 183 LRHLNI----NAIRDYSFKRLYRLKVLEISHWPYLD-----------TMTPNCLYGLNLTSLSITHCNLTAVPYLAVR-- 245 (477)
T ss_dssp EESCCC----CEECTTCSCSCTTCCEEEEECCTTCC-----------EECTTTTTTCCCSEEEEESSCCCSCCHHHHT--
T ss_pred CCCCcC----cEeChhhcccCcccceeeCCCCcccc-----------ccCcccccCccccEEECcCCcccccCHHHhc--
Confidence 765432 22333467788999999999875543 2233333445899999999998888843 43
Q ss_pred CCCCccEEEEecCCCCCCCC-CCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCC
Q 043855 799 SFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQ 877 (946)
Q Consensus 799 ~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 877 (946)
.+++|+.|+|++|.+....+ .+..+++|+.|+|++|. +..++...+. .+++|+.|+++++. +..+. . .
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-----~l~~L~~L~L~~N~-l~~~~-~---~ 314 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFR-----GLNYLRVLNVSGNQ-LTTLE-E---S 314 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTBT-----TCTTCCEEECCSSC-CSCCC-G---G
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHHhc-----CcccCCEEECCCCc-CceeC-H---h
Confidence 68999999999998754443 47889999999999864 4444333222 37899999999763 33332 1 1
Q ss_pred CCCCCCcccEeeecCCc
Q 043855 878 GIELFPNLREFRILRCP 894 (946)
Q Consensus 878 ~~~~~p~L~~L~l~~c~ 894 (946)
....+++|++|++++|+
T Consensus 315 ~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 315 VFHSVGNLETLILDSNP 331 (477)
T ss_dssp GBSCGGGCCEEECCSSC
T ss_pred HcCCCcccCEEEccCCC
Confidence 13568899999999884
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=4e-22 Score=217.23 Aligned_cols=191 Identities=22% Similarity=0.312 Sum_probs=141.5
Q ss_pred ccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeec
Q 043855 591 RLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNN 670 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 670 (946)
....+++|+|++|.+..+|..++++.+|++|+|++|.+..+|..++++++|++|+|++| .+..+|..+.++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 56889999999999999999999999999999999999999999999999999999999 67799999999999999999
Q ss_pred CCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEe
Q 043855 671 SNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRW 750 (946)
Q Consensus 671 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 750 (946)
++|...+.+|..++... + ...+.++++|+.|+|++
T Consensus 158 ~~n~~~~~~p~~~~~~~--------------------------~-------------------~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 158 RACPELTELPEPLASTD--------------------------A-------------------SGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp EEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEEEE
T ss_pred CCCCCccccChhHhhcc--------------------------c-------------------hhhhccCCCCCEEECcC
Confidence 99876777776543310 0 00123345566666666
Q ss_pred cCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCcee
Q 043855 751 TCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHL 829 (946)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L 829 (946)
|.... ++..+..+++|+.|++++|.+..+|..+. .+++|++|+|++|...+.+| .++.+++|+.|
T Consensus 193 n~l~~------------lp~~l~~l~~L~~L~L~~N~l~~l~~~l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 193 TGIRS------------LPASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ECCCC------------CCGGGGGCTTCCEEEEESSCCCCCCGGGG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred CCcCc------------chHhhcCCCCCCEEEccCCCCCcCchhhc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 64442 22334556677777777777666666554 56677777777776666665 46666777777
Q ss_pred eeccccCceeeC
Q 043855 830 VVRRMSRVKRLG 841 (946)
Q Consensus 830 ~L~~~~~l~~~~ 841 (946)
+|++|+.++.++
T Consensus 259 ~L~~n~~~~~~p 270 (328)
T 4fcg_A 259 ILKDCSNLLTLP 270 (328)
T ss_dssp ECTTCTTCCBCC
T ss_pred ECCCCCchhhcc
Confidence 776665544443
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=1.1e-20 Score=215.05 Aligned_cols=62 Identities=21% Similarity=0.164 Sum_probs=24.2
Q ss_pred CCcccEeeecCCcCccccCCCCCCCCCEEEEccccc-----ccccCCCC-------------CCccEEEEcCCCCCC--C
Q 043855 882 FPNLREFRILRCPKLQGTLPERLPELKMFVIQSCEE-----LLVSVTSL-------------PTLCRFKIGGCKNVP--D 941 (946)
Q Consensus 882 ~p~L~~L~l~~c~~L~~~lp~~l~~L~~L~i~~c~~-----l~~~l~~l-------------~~L~~L~l~~c~~l~--~ 941 (946)
+++|+.|++++| +++ .+|..+++|+.|++++|.. ++..+..+ ++|+.|++++|+-.. .
T Consensus 336 ~~~L~~L~L~~N-~l~-~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~ 413 (454)
T 1jl5_A 336 PPRLERLIASFN-HLA-EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD 413 (454)
T ss_dssp CTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------
T ss_pred CCcCCEEECCCC-ccc-cccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcccc
Confidence 566777777666 566 5666566677777766532 22333333 567777777764333 5
Q ss_pred CCCC
Q 043855 942 FFHS 945 (946)
Q Consensus 942 lp~~ 945 (946)
+|.+
T Consensus 414 iP~s 417 (454)
T 1jl5_A 414 IPES 417 (454)
T ss_dssp ----
T ss_pred chhh
Confidence 5554
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.5e-20 Score=205.78 Aligned_cols=280 Identities=16% Similarity=0.175 Sum_probs=189.5
Q ss_pred ceeEEEecCCCCccCCccccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhc-hhhhcccCccCeeecC
Q 043855 594 RLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKL-CASLGNLINLHHLNNS 671 (946)
Q Consensus 594 ~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~ 671 (946)
+|++++++++.++.+|..+. .+|++|+|++|.++.+|. .++++++|++|++++| .+..+ |..+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECC
Confidence 67888888888888887654 578888888888887765 6888888888888887 45444 7778888888888888
Q ss_pred CCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEec
Q 043855 672 NTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWT 751 (946)
Q Consensus 672 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 751 (946)
+|. +..+|..+. ++|++|.+..+.. .......+.++++|+.|+++.|
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L~l~~n~l------------------------------~~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQELRVHENEI------------------------------TKVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEEECCSSCC------------------------------CBBCHHHHTTCTTCCEEECCSS
T ss_pred CCc-CCccChhhc--ccccEEECCCCcc------------------------------cccCHhHhcCCccccEEECCCC
Confidence 887 667776554 4566554322110 0111223455667777777766
Q ss_pred CCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceee
Q 043855 752 CSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLV 830 (946)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~ 830 (946)
.... .......+..+++|+.|++++|.+..+|..+. ++|++|++++|.+.+..| .++.+++|+.|+
T Consensus 156 ~l~~---------~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 156 PLKS---------SGIENGAFQGMKKLSYIRIADTNITTIPQGLP----PSLTELHLDGNKITKVDAASLKGLNNLAKLG 222 (330)
T ss_dssp CCCG---------GGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC----TTCSEEECTTSCCCEECTGGGTTCTTCCEEE
T ss_pred cCCc---------cCcChhhccCCCCcCEEECCCCccccCCcccc----ccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 5432 00122345567788888888888888887553 788899998888655444 578888899999
Q ss_pred eccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCCC--------
Q 043855 831 VRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLPE-------- 902 (946)
Q Consensus 831 L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~-------- 902 (946)
|++|. +..++...+ ..+++|+.|+++++. +..+. .....+++|++|++++| .++ .+|.
T Consensus 223 Ls~n~-l~~~~~~~~-----~~l~~L~~L~L~~N~-l~~lp-----~~l~~l~~L~~L~l~~N-~i~-~~~~~~f~~~~~ 288 (330)
T 1xku_A 223 LSFNS-ISAVDNGSL-----ANTPHLRELHLNNNK-LVKVP-----GGLADHKYIQVVYLHNN-NIS-AIGSNDFCPPGY 288 (330)
T ss_dssp CCSSC-CCEECTTTG-----GGSTTCCEEECCSSC-CSSCC-----TTTTTCSSCCEEECCSS-CCC-CCCTTSSSCSSC
T ss_pred CCCCc-CceeChhhc-----cCCCCCCEEECCCCc-CccCC-----hhhccCCCcCEEECCCC-cCC-ccChhhcCCccc
Confidence 98764 444443222 237888999888763 33332 12467889999999998 677 4552
Q ss_pred --CCCCCCEEEEcccccc-----cccCCCCCCccEEEEcCC
Q 043855 903 --RLPELKMFVIQSCEEL-----LVSVTSLPTLCRFKIGGC 936 (946)
Q Consensus 903 --~l~~L~~L~i~~c~~l-----~~~l~~l~~L~~L~l~~c 936 (946)
..++|+.|++.+++.. +..+..+++|+.+++++|
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 2367889999887643 346677889999999887
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=8.4e-21 Score=207.84 Aligned_cols=280 Identities=15% Similarity=0.140 Sum_probs=177.0
Q ss_pred ceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccc-cchhcCCCCcEEecCCCCchhhc-hhhhcccCccCeeecC
Q 043855 594 RLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLP-ESVNKLYKLQTLLLEDCDRLKKL-CASLGNLINLHHLNNS 671 (946)
Q Consensus 594 ~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~ 671 (946)
+|++++++++.++.+|..+. .+|++|+|++|.+..+| ..+.++++|++|++++| .+..+ |..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence 57778888888877777663 57888888888877764 46788888888888887 44444 6677788888888888
Q ss_pred CCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEec
Q 043855 672 NTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWT 751 (946)
Q Consensus 672 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 751 (946)
+|. +..+|..+. ++|++|++..+... ......+.++++|+.|++++|
T Consensus 111 ~n~-l~~l~~~~~--~~L~~L~l~~n~i~------------------------------~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 111 KNH-LVEIPPNLP--SSLVELRIHDNRIR------------------------------KVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp SSC-CCSCCSSCC--TTCCEEECCSSCCC------------------------------CCCSGGGSSCSSCCEEECCSC
T ss_pred CCc-CCccCcccc--ccCCEEECCCCccC------------------------------ccCHhHhCCCccCCEEECCCC
Confidence 876 667776554 56666643222110 001122445566677777665
Q ss_pred CCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceee
Q 043855 752 CSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLV 830 (946)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~ 830 (946)
.... .......+..+ +|+.|++++|.+..+|..+. ++|++|++++|.+.+..+ .+..+++|+.|+
T Consensus 158 ~l~~---------~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 223 (332)
T 2ft3_A 158 PLEN---------SGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223 (332)
T ss_dssp CCBG---------GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC----SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCB
T ss_pred cccc---------CCCCcccccCC-ccCEEECcCCCCCccCcccc----CCCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 4431 00112233344 77777887777777776543 678888888877655443 577778888888
Q ss_pred eccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCCC--------
Q 043855 831 VRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLPE-------- 902 (946)
Q Consensus 831 L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~-------- 902 (946)
|++| .+..++...+ ..+++|+.|+++++. +..+. . ....+++|+.|++++| +++ .+|.
T Consensus 224 L~~N-~l~~~~~~~~-----~~l~~L~~L~L~~N~-l~~lp-~----~l~~l~~L~~L~l~~N-~l~-~~~~~~~~~~~~ 289 (332)
T 2ft3_A 224 LGHN-QIRMIENGSL-----SFLPTLRELHLDNNK-LSRVP-A----GLPDLKLLQVVYLHTN-NIT-KVGVNDFCPVGF 289 (332)
T ss_dssp CCSS-CCCCCCTTGG-----GGCTTCCEEECCSSC-CCBCC-T----TGGGCTTCCEEECCSS-CCC-BCCTTSSSCSSC
T ss_pred CCCC-cCCcCChhHh-----hCCCCCCEEECCCCc-CeecC-h----hhhcCccCCEEECCCC-CCC-ccChhHcccccc
Confidence 8775 3444433222 236788888887653 33322 1 1456888888888888 676 4542
Q ss_pred --CCCCCCEEEEcccccc-----cccCCCCCCccEEEEcCCC
Q 043855 903 --RLPELKMFVIQSCEEL-----LVSVTSLPTLCRFKIGGCK 937 (946)
Q Consensus 903 --~l~~L~~L~i~~c~~l-----~~~l~~l~~L~~L~l~~c~ 937 (946)
..++|+.|++.+++.. +..+..+++|+.|++++|.
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 1466888888887643 3456778899999998875
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=5.5e-21 Score=217.56 Aligned_cols=330 Identities=18% Similarity=0.121 Sum_probs=217.2
Q ss_pred ceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhhhhhcccCc-------------eeEEEecCCCC
Q 043855 539 NLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQR-------------LRVFSLCGYEI 605 (946)
Q Consensus 539 ~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~-------------Lr~L~L~~~~~ 605 (946)
..+.+.+..+.. ..-...+.++++|+.|.+.++. +.+..|..+.+++. +++|++++|.+
T Consensus 12 ~L~~L~l~~n~l--~~iP~~i~~L~~L~~L~l~~n~------~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 12 FLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSE------WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp ------------------------CCHHHHHHHHHH------HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred cchhhhcccCch--hhCChhHhcccchhhhhccCCc------ccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 445555544432 2233456788888888876543 34445555555555 49999999999
Q ss_pred ccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCC
Q 043855 606 FELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGK 685 (946)
Q Consensus 606 ~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 685 (946)
+.+|.. ..+|++|++++|.++.+|.. +.+|++|++++| .+..+|.. .++|++|++++|. +..+| .++.
T Consensus 84 ~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n-~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~~~~ 151 (454)
T 1jl5_A 84 SSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNN-NLKALSDL---PPLLEYLGVSNNQ-LEKLP-ELQN 151 (454)
T ss_dssp SCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSCCCSC---CTTCCEEECCSSC-CSSCC-CCTT
T ss_pred ccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCC-ccCcccCC---CCCCCEEECcCCC-CCCCc-ccCC
Confidence 988873 47899999999999998864 488999999998 66666542 2689999999997 77788 5999
Q ss_pred CCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhH
Q 043855 686 LTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETE 765 (946)
Q Consensus 686 l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 765 (946)
+++|++|++..+.... +.. ...+|+ .|.+.+..-. .++ .+.++++|+.|++++|.....+
T Consensus 152 l~~L~~L~l~~N~l~~---lp~--~~~~L~-~L~L~~n~l~-----~l~-~~~~l~~L~~L~l~~N~l~~l~-------- 211 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK---LPD--LPPSLE-FIAAGNNQLE-----ELP-ELQNLPFLTAIYADNNSLKKLP-------- 211 (454)
T ss_dssp CTTCCEEECCSSCCSC---CCC--CCTTCC-EEECCSSCCS-----SCC-CCTTCTTCCEEECCSSCCSSCC--------
T ss_pred CCCCCEEECCCCcCcc---cCC--Cccccc-EEECcCCcCC-----cCc-cccCCCCCCEEECCCCcCCcCC--------
Confidence 9999999776554322 111 112444 5555543211 122 4788899999999987655411
Q ss_pred HhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceeeeccccCceeeCcccc
Q 043855 766 KGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVRRMSRVKRLGSEFY 845 (946)
Q Consensus 766 ~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~ 845 (946)
. .+++|+.|++++|.+..+|. +. .+++|++|++++|.+.+ +|.. +++|+.|++++|. +..++.
T Consensus 212 ----~---~~~~L~~L~l~~n~l~~lp~-~~--~l~~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~N~-l~~l~~--- 274 (454)
T 1jl5_A 212 ----D---LPLSLESIVAGNNILEELPE-LQ--NLPFLTTIYADNNLLKT-LPDL--PPSLEALNVRDNY-LTDLPE--- 274 (454)
T ss_dssp ----C---CCTTCCEEECCSSCCSSCCC-CT--TCTTCCEEECCSSCCSS-CCSC--CTTCCEEECCSSC-CSCCCC---
T ss_pred ----C---CcCcccEEECcCCcCCcccc-cC--CCCCCCEEECCCCcCCc-cccc--ccccCEEECCCCc-ccccCc---
Confidence 1 13589999999999888885 44 68999999999988643 5532 4789999999864 444432
Q ss_pred CCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCCCCCCCCCEEEEcccccccccCCCC
Q 043855 846 GNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLPERLPELKMFVIQSCEELLVSVTSL 925 (946)
Q Consensus 846 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~~l~~L~~L~i~~c~~l~~~l~~l 925 (946)
.+++|+.|+++++. +..+. ...++|+.|++++| +++ .++...++|+.|++++|... .....+
T Consensus 275 ------~~~~L~~L~ls~N~-l~~l~--------~~~~~L~~L~l~~N-~l~-~i~~~~~~L~~L~Ls~N~l~-~lp~~~ 336 (454)
T 1jl5_A 275 ------LPQSLTFLDVSENI-FSGLS--------ELPPNLYYLNASSN-EIR-SLCDLPPSLEELNVSNNKLI-ELPALP 336 (454)
T ss_dssp ------CCTTCCEEECCSSC-CSEES--------CCCTTCCEEECCSS-CCS-EECCCCTTCCEEECCSSCCS-CCCCCC
T ss_pred ------ccCcCCEEECcCCc-cCccc--------CcCCcCCEEECcCC-cCC-cccCCcCcCCEEECCCCccc-cccccC
Confidence 25789999998753 22221 12368899999988 677 46655568999998886432 222346
Q ss_pred CCccEEEEcCCCCCCCCCC
Q 043855 926 PTLCRFKIGGCKNVPDFFH 944 (946)
Q Consensus 926 ~~L~~L~l~~c~~l~~lp~ 944 (946)
++|++|++++| .++.+|.
T Consensus 337 ~~L~~L~L~~N-~l~~lp~ 354 (454)
T 1jl5_A 337 PRLERLIASFN-HLAEVPE 354 (454)
T ss_dssp TTCCEEECCSS-CCSCCCC
T ss_pred CcCCEEECCCC-ccccccc
Confidence 78999999888 6777774
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.6e-21 Score=211.14 Aligned_cols=246 Identities=16% Similarity=0.171 Sum_probs=147.2
Q ss_pred cceeeccCCCCCCCccchhH--HhhhhhcccCceeEEEecC-CCCc-cCCccccCCCCCcEEeccCCCcc-ccccchhcC
Q 043855 564 CLRTFLPVNLPNSSRGLLAF--RVLHQLLRLQRLRVFSLCG-YEIF-ELPDSIGELRHLRYLNLSRTLIE-VLPESVNKL 638 (946)
Q Consensus 564 ~LrsL~~~~~~~~~~~~~~~--~~~~~l~~~~~Lr~L~L~~-~~~~-~lp~~i~~l~~Lr~L~Ls~~~i~-~lp~~i~~L 638 (946)
+++.|.+.++. +.. .++..+.++++|++|++++ |.+. .+|..|+++++|++|+|++|.+. .+|..+.++
T Consensus 51 ~l~~L~L~~~~------l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 51 RVNNLDLSGLN------LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CEEEEEEECCC------CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred eEEEEECCCCC------ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 45566655543 222 3455667888888888885 6666 57888888888888888888887 778888888
Q ss_pred CCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCC-CCcccCceecCCCCCCChhccccccccCCe
Q 043855 639 YKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLT-SLQTLCSFVVGKDSGSGLRELKLLKHLHGT 717 (946)
Q Consensus 639 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~ 717 (946)
++|++|++++|.....+|..+.++++|++|++++|...+.+|..++.++ +|+.|++..+...
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~----------------- 187 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT----------------- 187 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-----------------
T ss_pred CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-----------------
Confidence 8888888888844447788888888888888888873347777777777 7777754332110
Q ss_pred eEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCC
Q 043855 718 LNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGD 797 (946)
Q Consensus 718 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 797 (946)
...+..+..++ |+.|++++|.... ..+..+..+++|+.|++++|.+...+..+.
T Consensus 188 -------------~~~~~~~~~l~-L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~- 241 (313)
T 1ogq_A 188 -------------GKIPPTFANLN-LAFVDLSRNMLEG-----------DASVLFGSDKNTQKIHLAKNSLAFDLGKVG- 241 (313)
T ss_dssp -------------EECCGGGGGCC-CSEEECCSSEEEE-----------CCGGGCCTTSCCSEEECCSSEECCBGGGCC-
T ss_pred -------------ccCChHHhCCc-ccEEECcCCcccC-----------cCCHHHhcCCCCCEEECCCCceeeecCccc-
Confidence 01111122222 5555555443322 123344455556666665555443333332
Q ss_pred CCCCCccEEEEecCCCCCCCC-CCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcc
Q 043855 798 FSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMRE 866 (946)
Q Consensus 798 ~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 866 (946)
.+++|++|+|++|.+.+.+| .++.+++|+.|+|++|...+.+|.. ..+++|+.|++.+.+.
T Consensus 242 -~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-------~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 242 -LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-------GNLQRFDVSAYANNKC 303 (313)
T ss_dssp -CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-------TTGGGSCGGGTCSSSE
T ss_pred -ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-------ccccccChHHhcCCCC
Confidence 44566666666665544444 3555566666666655433333321 1255566666655543
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=4.6e-20 Score=200.91 Aligned_cols=228 Identities=19% Similarity=0.260 Sum_probs=175.7
Q ss_pred CCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccC
Q 043855 614 ELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLC 693 (946)
Q Consensus 614 ~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 693 (946)
...++++|+|++|.+..+|..++++++|++|+|++| .+..+|..++++++|++|++++|. +..+|..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEE
Confidence 457899999999999999999999999999999999 666999999999999999999998 778898888888888885
Q ss_pred ceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCC
Q 043855 694 SFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLK 773 (946)
Q Consensus 694 ~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~ 773 (946)
+..+.... ..+..+. .+. ....+.
T Consensus 157 L~~n~~~~------------------------------~~p~~~~------~~~--------------------~~~~~~ 180 (328)
T 4fcg_A 157 IRACPELT------------------------------ELPEPLA------STD--------------------ASGEHQ 180 (328)
T ss_dssp EEEETTCC------------------------------CCCSCSE------EEC---------------------CCCEE
T ss_pred CCCCCCcc------------------------------ccChhHh------hcc--------------------chhhhc
Confidence 54432100 0000010 001 112345
Q ss_pred CCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceeeeccccCceeeCccccCCCCCCcC
Q 043855 774 PHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPF 853 (946)
Q Consensus 774 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 853 (946)
.+++|+.|++++|.+..+|.++. .+++|++|+|++|.+.+..+.++.+++|+.|+|++|...+.++..+ ..+
T Consensus 181 ~l~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~------~~l 252 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF------GGR 252 (328)
T ss_dssp ESTTCCEEEEEEECCCCCCGGGG--GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCT------TCC
T ss_pred cCCCCCEEECcCCCcCcchHhhc--CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHh------cCC
Confidence 67899999999999999999886 7899999999999987544578899999999999998777776554 237
Q ss_pred CCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCCC---CCCCCCEEEEc
Q 043855 854 LCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLPE---RLPELKMFVIQ 913 (946)
Q Consensus 854 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~---~l~~L~~L~i~ 913 (946)
++|+.|+++++.....+. .. ...+++|++|+|++|+.+. .+|. .+++|+.+.+.
T Consensus 253 ~~L~~L~L~~n~~~~~~p-~~----~~~l~~L~~L~L~~n~~~~-~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLP-LD----IHRLTQLEKLDLRGCVNLS-RLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCCCEEECTTCTTCCBCC-TT----GGGCTTCCEEECTTCTTCC-CCCGGGGGSCTTCEEECC
T ss_pred CCCCEEECCCCCchhhcc-hh----hhcCCCCCEEeCCCCCchh-hccHHHhhccCceEEeCC
Confidence 889999998877655543 22 5678889999999985555 7885 45666666654
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=6e-20 Score=220.55 Aligned_cols=135 Identities=18% Similarity=0.193 Sum_probs=97.9
Q ss_pred ccccceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhhhh-hcccCceeEEEecCCCCccCCc-cc
Q 043855 535 RFSQNLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQ-LLRLQRLRVFSLCGYEIFELPD-SI 612 (946)
Q Consensus 535 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~-l~~~~~Lr~L~L~~~~~~~lp~-~i 612 (946)
.+|..++++.+..+.... -....+.++++|+.|.+.++. + ..+++. +.++++|++|+|++|.++.+|. .|
T Consensus 49 ~lp~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~------i-~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCE------I-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp SSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCC------C-CEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred CCCcCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCc------C-CCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 355677787766543221 112346678888988887764 2 123333 4478899999999998888874 57
Q ss_pred cCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchh--hchhhhcccCccCeeecCCCCCcccc
Q 043855 613 GELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLK--KLCASLGNLINLHHLNNSNTDSLEEM 679 (946)
Q Consensus 613 ~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~ 679 (946)
+++.+|++|+|++|.++.+|. .|++|++|++|++++| .+. .+|..++.+++|++|++++|. +..+
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 188 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI 188 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEE
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc-cccc
Confidence 889999999999998888865 4888999999999988 444 356778888999999998887 4444
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=1.5e-19 Score=211.98 Aligned_cols=256 Identities=19% Similarity=0.139 Sum_probs=175.1
Q ss_pred cCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecC
Q 043855 592 LQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNS 671 (946)
Q Consensus 592 ~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 671 (946)
...+++|++++|.++.+|..+. ++|++|+|++|.++.+|. .+++|++|+|++| .+..+|. .+++|++|+++
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEEC
T ss_pred CCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECc
Confidence 3468899999999999988776 789999999999998887 5789999999998 6778887 67889999999
Q ss_pred CCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEec
Q 043855 672 NTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWT 751 (946)
Q Consensus 672 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 751 (946)
+|. +..+|. .+++|+.|.+..+... . + +. .+++|+.|+|++|
T Consensus 110 ~N~-l~~l~~---~l~~L~~L~L~~N~l~------~------l-------------------p~---~l~~L~~L~Ls~N 151 (622)
T 3g06_A 110 SNP-LTHLPA---LPSGLCKLWIFGNQLT------S------L-------------------PV---LPPGLQELSVSDN 151 (622)
T ss_dssp SCC-CCCCCC---CCTTCCEEECCSSCCS------C------C-------------------CC---CCTTCCEEECCSS
T ss_pred CCc-CCCCCC---CCCCcCEEECCCCCCC------c------C-------------------CC---CCCCCCEEECcCC
Confidence 887 777776 4566666644322110 0 0 00 1256777777776
Q ss_pred CCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceeee
Q 043855 752 CSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVV 831 (946)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L 831 (946)
..... + ..+++|+.|++++|.+..+|. .+++|+.|++++|.+.. +|. .+++|+.|++
T Consensus 152 ~l~~l------------~---~~~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~l~~-l~~--~~~~L~~L~L 208 (622)
T 3g06_A 152 QLASL------------P---ALPSELCKLWAYNNQLTSLPM-----LPSGLQELSVSDNQLAS-LPT--LPSELYKLWA 208 (622)
T ss_dssp CCSCC------------C---CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSC-CCC--CCTTCCEEEC
T ss_pred cCCCc------------C---CccCCCCEEECCCCCCCCCcc-----cCCCCcEEECCCCCCCC-CCC--ccchhhEEEC
Confidence 54431 1 124577778888777777772 45778888888777543 443 2467778887
Q ss_pred ccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCCCCCCCCCEEE
Q 043855 832 RRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLPERLPELKMFV 911 (946)
Q Consensus 832 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~~l~~L~~L~ 911 (946)
++| .+..++. .+++|+.|+++++ .+..+. ..+++|+.|++++| +++ .+|..+++|+.|+
T Consensus 209 ~~N-~l~~l~~---------~~~~L~~L~Ls~N-~L~~lp--------~~l~~L~~L~Ls~N-~L~-~lp~~~~~L~~L~ 267 (622)
T 3g06_A 209 YNN-RLTSLPA---------LPSGLKELIVSGN-RLTSLP--------VLPSELKELMVSGN-RLT-SLPMLPSGLLSLS 267 (622)
T ss_dssp CSS-CCSSCCC---------CCTTCCEEECCSS-CCSCCC--------CCCTTCCEEECCSS-CCS-CCCCCCTTCCEEE
T ss_pred cCC-cccccCC---------CCCCCCEEEccCC-ccCcCC--------CCCCcCcEEECCCC-CCC-cCCcccccCcEEe
Confidence 765 3343332 2567888887765 233221 45677888888887 677 6777777888888
Q ss_pred Ecccc--cccccCCCCCCccEEEEcCCCC
Q 043855 912 IQSCE--ELLVSVTSLPTLCRFKIGGCKN 938 (946)
Q Consensus 912 i~~c~--~l~~~l~~l~~L~~L~l~~c~~ 938 (946)
+++|. .++..+.++++|+.|++++|+-
T Consensus 268 Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 268 VYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 87764 3345566778888888888753
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=1.3e-20 Score=204.14 Aligned_cols=250 Identities=16% Similarity=0.113 Sum_probs=195.6
Q ss_pred CceeEEEecCCCCc---cCCccccCCCCCcEEeccC-CCcc-ccccchhcCCCCcEEecCCCCchhhchhhhcccCccCe
Q 043855 593 QRLRVFSLCGYEIF---ELPDSIGELRHLRYLNLSR-TLIE-VLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHH 667 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~---~lp~~i~~l~~Lr~L~Ls~-~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 667 (946)
.+++.|+|++|.+. .+|..++++++|++|+|++ |.+. .+|..++++++|++|++++|.....+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999998 5899999999999999995 7777 78999999999999999999555588999999999999
Q ss_pred eecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCccc-ccCce
Q 043855 668 LNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKK-NLKVL 746 (946)
Q Consensus 668 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~-~L~~L 746 (946)
|++++|.....+|..++.+++|++|++..+.. ....+..+..++ +|+.|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l------------------------------~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRI------------------------------SGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCC------------------------------EEECCGGGGCCCTTCCEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcc------------------------------cCcCCHHHhhhhhcCcEE
Confidence 99999984447888899999998886533211 111223345555 88999
Q ss_pred EEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCC-CCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCC
Q 043855 747 LLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGT-EFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPS 825 (946)
Q Consensus 747 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 825 (946)
++++|.... ..+..+..++ |+.|++++|.+. ..|..+. .+++|+.|+|++|.+...+|.+..+++
T Consensus 180 ~L~~N~l~~-----------~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~l~~ 245 (313)
T 1ogq_A 180 TISRNRLTG-----------KIPPTFANLN-LAFVDLSRNMLEGDASVLFG--SDKNTQKIHLAKNSLAFDLGKVGLSKN 245 (313)
T ss_dssp ECCSSEEEE-----------ECCGGGGGCC-CSEEECCSSEEEECCGGGCC--TTSCCSEEECCSSEECCBGGGCCCCTT
T ss_pred ECcCCeeec-----------cCChHHhCCc-ccEEECcCCcccCcCCHHHh--cCCCCCEEECCCCceeeecCcccccCC
Confidence 998875542 1233444444 999999999866 4566665 789999999999998877888889999
Q ss_pred CceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccc
Q 043855 826 LKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQG 898 (946)
Q Consensus 826 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~ 898 (946)
|+.|+|++|.....++..+. .+++|+.|+++++.-...+. . .+.+++|+.|++.+|+.+.|
T Consensus 246 L~~L~Ls~N~l~~~~p~~l~------~l~~L~~L~Ls~N~l~~~ip-~-----~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQGLT------QLKFLHSLNVSFNNLCGEIP-Q-----GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCEEECCSSCCEECCCGGGG------GCTTCCEEECCSSEEEEECC-C-----STTGGGSCGGGTCSSSEEES
T ss_pred CCEEECcCCcccCcCChHHh------cCcCCCEEECcCCcccccCC-C-----CccccccChHHhcCCCCccC
Confidence 99999999865445555442 38999999999875322322 1 36799999999999987874
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=1.7e-19 Score=197.50 Aligned_cols=215 Identities=20% Similarity=0.200 Sum_probs=127.0
Q ss_pred CceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCcccc-ccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeec
Q 043855 593 QRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVL-PESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNN 670 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 670 (946)
+.|++|++++|.+..++ ..++++.+|++|+|++|.++.+ |..++++++|++|++++| .+..+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEEC
Confidence 57888888888888764 5788888888888888888876 677888888888888888 6777877665 78888888
Q ss_pred CCCCCccccccc-cCCCCCCcccCceecCCCC-CCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEE
Q 043855 671 SNTDSLEEMPIG-IGKLTSLQTLCSFVVGKDS-GSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLL 748 (946)
Q Consensus 671 ~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~-~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L 748 (946)
++|. +..+|.. ++.+++|++|++..+.... +.....+..+ +|+ .+.+....-. .++..+. ++|+.|++
T Consensus 131 ~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~-~L~l~~n~l~-----~l~~~~~--~~L~~L~l 200 (332)
T 2ft3_A 131 HDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN-YLRISEAKLT-----GIPKDLP--ETLNELHL 200 (332)
T ss_dssp CSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS-CCBCCSSBCS-----SCCSSSC--SSCSCCBC
T ss_pred CCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC-EEECcCCCCC-----ccCcccc--CCCCEEEC
Confidence 8887 6667654 7778888888654432210 0111111211 222 2222211100 0111111 45555566
Q ss_pred EecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCc-CcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCC
Q 043855 749 RWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPT-WLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSL 826 (946)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L 826 (946)
++|.... .....+..+++|+.|++++|.+..++. ++. .+++|+.|+|++|.+. .+| .++.+++|
T Consensus 201 ~~n~i~~-----------~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 201 DHNKIQA-----------IELEDLLRYSKLYRLGLGHNQIRMIENGSLS--FLPTLRELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp CSSCCCC-----------CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG--GCTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred CCCcCCc-----------cCHHHhcCCCCCCEEECCCCcCCcCChhHhh--CCCCCCEEECCCCcCe-ecChhhhcCccC
Confidence 5554433 112334455556666666655554443 332 4556666666655543 333 35555566
Q ss_pred ceeeeccc
Q 043855 827 KHLVVRRM 834 (946)
Q Consensus 827 ~~L~L~~~ 834 (946)
+.|++++|
T Consensus 267 ~~L~l~~N 274 (332)
T 2ft3_A 267 QVVYLHTN 274 (332)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 66666554
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=3.5e-19 Score=194.80 Aligned_cols=216 Identities=19% Similarity=0.186 Sum_probs=129.0
Q ss_pred CceeEEEecCCCCccCCc-cccCCCCCcEEeccCCCcccc-ccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeec
Q 043855 593 QRLRVFSLCGYEIFELPD-SIGELRHLRYLNLSRTLIEVL-PESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNN 670 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 670 (946)
+.|++|++++|.++.+|. .|+++++|++|+|++|.++.+ |..++++++|++|++++| .+..+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEEC
Confidence 578889999998888765 688899999999999988877 778889999999999988 6778887665 78999999
Q ss_pred CCCCCcccccc-ccCCCCCCcccCceecCCCC-CCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEE
Q 043855 671 SNTDSLEEMPI-GIGKLTSLQTLCSFVVGKDS-GSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLL 748 (946)
Q Consensus 671 ~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~-~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L 748 (946)
++|. +..++. .++.+++|++|++..+.... +.....+..+++|+ .+.+....-. .++..+ .++|+.|++
T Consensus 129 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~-~L~l~~n~l~-----~l~~~~--~~~L~~L~l 199 (330)
T 1xku_A 129 HENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS-YIRIADTNIT-----TIPQGL--PPSLTELHL 199 (330)
T ss_dssp CSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC-EEECCSSCCC-----SCCSSC--CTTCSEEEC
T ss_pred CCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC-EEECCCCccc-----cCCccc--cccCCEEEC
Confidence 9887 656654 37788888888664433211 11122233333343 3333322110 011111 145555555
Q ss_pred EecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCc-CcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCC
Q 043855 749 RWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPT-WLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSL 826 (946)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L 826 (946)
++|.... ..+..+..+++|+.|++++|.+..++. ++. .+++|++|+|++|.+. .+| .+..+++|
T Consensus 200 ~~n~l~~-----------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 200 DGNKITK-----------VDAASLKGLNNLAKLGLSFNSISAVDNGSLA--NTPHLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp TTSCCCE-----------ECTGGGTTCTTCCEEECCSSCCCEECTTTGG--GSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred CCCcCCc-----------cCHHHhcCCCCCCEEECCCCcCceeChhhcc--CCCCCCEEECCCCcCc-cCChhhccCCCc
Confidence 5544332 112334445555555555555544432 332 4455555555555543 333 35555555
Q ss_pred ceeeeccc
Q 043855 827 KHLVVRRM 834 (946)
Q Consensus 827 ~~L~L~~~ 834 (946)
+.|++++|
T Consensus 266 ~~L~l~~N 273 (330)
T 1xku_A 266 QVVYLHNN 273 (330)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 55555554
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=1.7e-18 Score=207.79 Aligned_cols=126 Identities=25% Similarity=0.294 Sum_probs=104.6
Q ss_pred ccceeeccCCCCCCCccchhHHhh-hhhcccCceeEEEecCCCCccCCc-cccCCCCCcEEeccCCCcccccc-chhcCC
Q 043855 563 VCLRTFLPVNLPNSSRGLLAFRVL-HQLLRLQRLRVFSLCGYEIFELPD-SIGELRHLRYLNLSRTLIEVLPE-SVNKLY 639 (946)
Q Consensus 563 ~~LrsL~~~~~~~~~~~~~~~~~~-~~l~~~~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~ 639 (946)
+.++.|.+.++. +. .++ ..+.++++|++|+|++|.++.+|. .|++|++|++|+|++|.++.+|. .|.+|+
T Consensus 52 ~~~~~LdLs~N~------i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNP------LR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TTCCEEECTTSC------CC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred cCCCEEEeeCCC------CC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 368899988764 22 233 345699999999999999998864 68999999999999999999976 589999
Q ss_pred CCcEEecCCCCchhhchh-hhcccCccCeeecCCCCCcc--ccccccCCCCCCcccCceec
Q 043855 640 KLQTLLLEDCDRLKKLCA-SLGNLINLHHLNNSNTDSLE--EMPIGIGKLTSLQTLCSFVV 697 (946)
Q Consensus 640 ~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~~~~~ 697 (946)
+|++|+|++| .+..+|. .++++++|++|++++|. +. .+|..++.+++|++|++..+
T Consensus 125 ~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 125 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCc
Confidence 9999999999 6777776 48999999999999997 54 35677889999999976554
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=9.6e-18 Score=196.57 Aligned_cols=234 Identities=19% Similarity=0.062 Sum_probs=123.0
Q ss_pred CceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCC
Q 043855 593 QRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSN 672 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 672 (946)
++|++|++++|.++.+|. .+++|++|+|++|.++.+|. .+++|++|++++| .+..+|. .+++|++|++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECCC
Confidence 567777777777777776 56777777777777777776 5677777777777 5666665 456777777777
Q ss_pred CCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecC
Q 043855 673 TDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTC 752 (946)
Q Consensus 673 ~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 752 (946)
|. +..+|.. +++|++|++..+...... . .+.+|+ .|.+.+..-. .++ ..+++|+.|++++|.
T Consensus 131 N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~--~---~~~~L~-~L~L~~N~l~-----~l~---~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 131 NQ-LTSLPVL---PPGLQELSVSDNQLASLP--A---LPSELC-KLWAYNNQLT-----SLP---MLPSGLQELSVSDNQ 192 (622)
T ss_dssp SC-CSCCCCC---CTTCCEEECCSSCCSCCC--C---CCTTCC-EEECCSSCCS-----CCC---CCCTTCCEEECCSSC
T ss_pred CC-CCcCCCC---CCCCCEEECcCCcCCCcC--C---ccCCCC-EEECCCCCCC-----CCc---ccCCCCcEEECCCCC
Confidence 76 6666654 355666644333211100 0 011121 2222211100 001 223455666665554
Q ss_pred CCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceeeec
Q 043855 753 STDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVR 832 (946)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 832 (946)
.... +. .+++|+.|++++|.+..+|. .+++|+.|+|++|.+. .+| ..+++|+.|+|+
T Consensus 193 l~~l------------~~---~~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~L~-~lp--~~l~~L~~L~Ls 249 (622)
T 3g06_A 193 LASL------------PT---LPSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNRLT-SLP--VLPSELKELMVS 249 (622)
T ss_dssp CSCC------------CC---CCTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSCCS-CCC--CCCTTCCEEECC
T ss_pred CCCC------------CC---ccchhhEEECcCCcccccCC-----CCCCCCEEEccCCccC-cCC--CCCCcCcEEECC
Confidence 4321 00 12456666666666555553 2355666666665543 244 344566666666
Q ss_pred cccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCC
Q 043855 833 RMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRC 893 (946)
Q Consensus 833 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c 893 (946)
+| .++.++. .+++|+.|+++++. +..+. .....+++|+.|++++|
T Consensus 250 ~N-~L~~lp~---------~~~~L~~L~Ls~N~-L~~lp-----~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 250 GN-RLTSLPM---------LPSGLLSLSVYRNQ-LTRLP-----ESLIHLSSETTVNLEGN 294 (622)
T ss_dssp SS-CCSCCCC---------CCTTCCEEECCSSC-CCSCC-----GGGGGSCTTCEEECCSC
T ss_pred CC-CCCcCCc---------ccccCcEEeCCCCC-CCcCC-----HHHhhccccCEEEecCC
Confidence 54 3333332 14556666665542 22221 11345556666666665
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=2.5e-21 Score=222.83 Aligned_cols=381 Identities=16% Similarity=0.074 Sum_probs=226.0
Q ss_pred cceeEEEEEeccCCCCccccc-ccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccC-Cccc-cC
Q 043855 538 QNLCHFSFIRGDYDGGKRFEN-LYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFEL-PDSI-GE 614 (946)
Q Consensus 538 ~~~r~ls~~~~~~~~~~~~~~-~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~l-p~~i-~~ 614 (946)
..++++.+...... ...+.. +..+++|++|.+.++.-.. .....++..+..+++|++|++++|.+... +..+ ..
T Consensus 3 ~~l~~L~Ls~~~l~-~~~~~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 3 LDIQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTE--ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQG 79 (461)
T ss_dssp EEEEEEEEESCCCC-HHHHHHHHHHHTTCSEEEEESSCCCH--HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred ccceehhhhhcccC-chhHHHHHhhcCCccEEEccCCCCCH--HHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHH
Confidence 45566666544322 112222 5678889999888765100 00113344455889999999999988642 2222 33
Q ss_pred CC----CCcEEeccCCCcc-----ccccchhcCCCCcEEecCCCCchhhchhhhc-----ccCccCeeecCCCCCccc--
Q 043855 615 LR----HLRYLNLSRTLIE-----VLPESVNKLYKLQTLLLEDCDRLKKLCASLG-----NLINLHHLNNSNTDSLEE-- 678 (946)
Q Consensus 615 l~----~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~-----~L~~L~~L~l~~~~~~~~-- 678 (946)
+. +|++|+|++|.+. .+|..+.++++|++|++++|......+..+. ..++|++|++++|. +..
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~ 158 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAAS 158 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGG
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHH
Confidence 44 6999999999887 4688889999999999999853322233222 35679999999997 443
Q ss_pred ---cccccCCCCCCcccCceecCCCCCCChhccc-----cccccCCeeEEecCCCCCCccccccccCCcccccCceEEEe
Q 043855 679 ---MPIGIGKLTSLQTLCSFVVGKDSGSGLRELK-----LLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRW 750 (946)
Q Consensus 679 ---~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~-----~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 750 (946)
++..+..+++|++|++..+.. ....+..+. .+++|+ .|.+.++.-.......+...+..+++|+.|++++
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDI-NEAGVRVLCQGLKDSPCQLE-ALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBC-HHHHHHHHHHHHHHSCCCCC-EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhhCCCCCEEECcCCCc-chHHHHHHHHHHhcCCCCce-EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 344566778898887654432 111122222 133565 6666655322222223455566778899999988
Q ss_pred cCCCCCCCchhhhhHHhHhc-cCCCCCCcceEEEeecCCCC-----CCcCcCCCCCCCccEEEEecCCCCCC----CC-C
Q 043855 751 TCSTDDSSLREAETEKGVLT-MLKPHKNLEQICISGYGGTE-----FPTWLGDFSFSNLVTLKFEDCGMCTS----LP-S 819 (946)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~~~~~----l~-~ 819 (946)
|.... .....+.. ....+++|+.|++++|.+.. +|..+. .+++|++|+|++|.+.+. +. .
T Consensus 237 n~l~~-------~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~ 307 (461)
T 1z7x_W 237 NKLGD-------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR--AKESLKELSLAGNELGDEGARLLCET 307 (461)
T ss_dssp SBCHH-------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH--HCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred CcCCh-------HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh--hCCCcceEECCCCCCchHHHHHHHHH
Confidence 75432 11111222 23357889999999887765 555554 478899999998875321 11 1
Q ss_pred -CCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCC-CCCCCcccEeeecCCcCcc
Q 043855 820 -VGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQG-IELFPNLREFRILRCPKLQ 897 (946)
Q Consensus 820 -l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~p~L~~L~l~~c~~L~ 897 (946)
....++|+.|++++|. ++..+...... ....+++|+.|+++++. +.+......... ....++|++|++++| +++
T Consensus 308 l~~~~~~L~~L~L~~n~-l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~ 383 (461)
T 1z7x_W 308 LLEPGCQLESLWVKSCS-FTAACCSHFSS-VLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVS 383 (461)
T ss_dssp HTSTTCCCCEEECTTSC-CBGGGHHHHHH-HHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred hccCCccceeeEcCCCC-CchHHHHHHHH-HHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCC
Confidence 1234689999998875 32221100000 01125889999998763 322110000000 012678999999998 666
Q ss_pred c----cCCC---CCCCCCEEEEcccccccc-------cC-CCCCCccEEEEcCCC
Q 043855 898 G----TLPE---RLPELKMFVIQSCEELLV-------SV-TSLPTLCRFKIGGCK 937 (946)
Q Consensus 898 ~----~lp~---~l~~L~~L~i~~c~~l~~-------~l-~~l~~L~~L~l~~c~ 937 (946)
+ .+|. .+++|++|++++|+.-.. .+ ...++|+.|.+.++.
T Consensus 384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 3 3452 478899999988753311 12 234578888887764
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=1.4e-18 Score=187.87 Aligned_cols=98 Identities=21% Similarity=0.202 Sum_probs=59.6
Q ss_pred CceeEEEecCCCCccCCcc-ccCCCCCcEEeccCCCcccc---ccchhcCCCCcEEecCCCCchhhchhhhcccCccCee
Q 043855 593 QRLRVFSLCGYEIFELPDS-IGELRHLRYLNLSRTLIEVL---PESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHL 668 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp~~-i~~l~~Lr~L~Ls~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 668 (946)
++|++|++++|.+..+|.. ++++++|++|+|++|.+..+ |..+..+++|++|++++| .+..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEE
Confidence 4566666666666666643 46666666666666666544 455556666666666666 455566666666666666
Q ss_pred ecCCCCCcccccc--ccCCCCCCccc
Q 043855 669 NNSNTDSLEEMPI--GIGKLTSLQTL 692 (946)
Q Consensus 669 ~l~~~~~~~~~p~--~i~~l~~L~~L 692 (946)
++++|. +..++. .+..+++|++|
T Consensus 107 ~l~~n~-l~~~~~~~~~~~l~~L~~L 131 (306)
T 2z66_A 107 DFQHSN-LKQMSEFSVFLSLRNLIYL 131 (306)
T ss_dssp ECTTSE-EESSTTTTTTTTCTTCCEE
T ss_pred ECCCCc-ccccccchhhhhccCCCEE
Confidence 666665 444443 34455555554
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=189.69 Aligned_cols=250 Identities=16% Similarity=0.118 Sum_probs=153.7
Q ss_pred CceeEEEecCCCCccCCc-cccCCCCCcEEeccCCCcccc-ccchhcCCCCcEEecCCCCchhhchhh-hcccCccCeee
Q 043855 593 QRLRVFSLCGYEIFELPD-SIGELRHLRYLNLSRTLIEVL-PESVNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLN 669 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 669 (946)
++|++|++++|.++.+|. .++++++|++|+|++|.++.+ |..+.++++|++|++++| .+..+|.. +.++++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEE
Confidence 478888888888887765 678888888888888888876 456888888888888887 66667665 77888888888
Q ss_pred cCCCCCcccccc--ccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceE
Q 043855 670 NSNTDSLEEMPI--GIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLL 747 (946)
Q Consensus 670 l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 747 (946)
+++|. +..+|. .++.+++|++|++..+.... ......+.++++|+.|+
T Consensus 131 L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~-----------------------------~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 131 LLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT-----------------------------KIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC-----------------------------EECTTTTTTCCEEEEEE
T ss_pred CCCCC-CcccCchhhhccCCCCcEEECCCCcccc-----------------------------ccCHHHccCCCCCCEEE
Confidence 88887 667776 46777777777554432111 11122345556667777
Q ss_pred EEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCC----CCCCCC
Q 043855 748 LRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSL----PSVGQL 823 (946)
Q Consensus 748 L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l----~~l~~l 823 (946)
+++|.... ..+..+..+++|+.|++++|.+..+|..+.. .+++|+.|++++|.+.+.. +.....
T Consensus 181 l~~n~l~~-----------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~~~~~ 248 (353)
T 2z80_A 181 IDASDLQS-----------YEPKSLKSIQNVSHLILHMKQHILLLEIFVD-VTSSVECLELRDTDLDTFHFSELSTGETN 248 (353)
T ss_dssp EEETTCCE-----------ECTTTTTTCSEEEEEEEECSCSTTHHHHHHH-HTTTEEEEEEESCBCTTCCCC------CC
T ss_pred CCCCCcCc-----------cCHHHHhccccCCeecCCCCccccchhhhhh-hcccccEEECCCCcccccccccccccccc
Confidence 76665443 1234455666777777777766655544321 3567777777777654321 123335
Q ss_pred CCCceeeeccccCce----eeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCcc
Q 043855 824 PSLKHLVVRRMSRVK----RLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQ 897 (946)
Q Consensus 824 ~~L~~L~L~~~~~l~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~ 897 (946)
+.++.+++.++..-. .++..+ ..+++|+.|+++++. +..+. .. ....+++|++|++++| .+.
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l------~~l~~L~~L~Ls~N~-l~~i~-~~---~~~~l~~L~~L~L~~N-~~~ 314 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLL------NQISGLLELEFSRNQ-LKSVP-DG---IFDRLTSLQKIWLHTN-PWD 314 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHH------HTCTTCCEEECCSSC-CCCCC-TT---TTTTCTTCCEEECCSS-CBC
T ss_pred chhhccccccccccCcchhhhHHHH------hcccCCCEEECCCCC-CCccC-HH---HHhcCCCCCEEEeeCC-Ccc
Confidence 556666666542111 111111 126677777777652 23222 11 0256778888888887 344
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=189.84 Aligned_cols=127 Identities=24% Similarity=0.252 Sum_probs=105.1
Q ss_pred ccceeeccCCCCCCCccchhHHhhh-hhcccCceeEEEecCCCCccC-CccccCCCCCcEEeccCCCccccccc-hhcCC
Q 043855 563 VCLRTFLPVNLPNSSRGLLAFRVLH-QLLRLQRLRVFSLCGYEIFEL-PDSIGELRHLRYLNLSRTLIEVLPES-VNKLY 639 (946)
Q Consensus 563 ~~LrsL~~~~~~~~~~~~~~~~~~~-~l~~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~ 639 (946)
++|+.|.+.++. +.. ++. .+.++++|++|++++|.++.+ |..++++++|++|+|++|.++.+|.. +++++
T Consensus 52 ~~L~~L~l~~n~------i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNR------ITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSC------CCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred ccCcEEECCCCc------Ccc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence 579999988764 222 233 466899999999999999976 46799999999999999999999877 89999
Q ss_pred CCcEEecCCCCchhhchh--hhcccCccCeeecCCCCCccccc-cccCCCCCCcccCceec
Q 043855 640 KLQTLLLEDCDRLKKLCA--SLGNLINLHHLNNSNTDSLEEMP-IGIGKLTSLQTLCSFVV 697 (946)
Q Consensus 640 ~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~ 697 (946)
+|++|++++| .+..+|. .+.++++|++|++++|..+..++ ..++.+++|++|++..+
T Consensus 125 ~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 125 SLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp TCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred cCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 9999999999 7778887 68999999999999995466665 45788888888866544
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=4.1e-18 Score=184.15 Aligned_cols=223 Identities=19% Similarity=0.107 Sum_probs=134.3
Q ss_pred ccceeeccCCCCCCCccchhHHhhhhh-cccCceeEEEecCCCCccC---CccccCCCCCcEEeccCCCccccccchhcC
Q 043855 563 VCLRTFLPVNLPNSSRGLLAFRVLHQL-LRLQRLRVFSLCGYEIFEL---PDSIGELRHLRYLNLSRTLIEVLPESVNKL 638 (946)
Q Consensus 563 ~~LrsL~~~~~~~~~~~~~~~~~~~~l-~~~~~Lr~L~L~~~~~~~l---p~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L 638 (946)
++++.|.+.++. + ..++..+ .++++|++|++++|.+..+ |..+..+.+|++|+|++|.+..+|..+..+
T Consensus 28 ~~l~~L~L~~n~------l-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l 100 (306)
T 2z66_A 28 SSATRLELESNK------L-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100 (306)
T ss_dssp TTCCEEECCSSC------C-CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred CCCCEEECCCCc------c-CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence 467777776553 1 1233333 3777888888888877654 456667778888888888877777777788
Q ss_pred CCCcEEecCCCCchhhchh--hhcccCccCeeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCC
Q 043855 639 YKLQTLLLEDCDRLKKLCA--SLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHG 716 (946)
Q Consensus 639 ~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~ 716 (946)
++|++|++++| .+..+|. .+.++++|++|++++|......|..++.+++|++|.+..+..
T Consensus 101 ~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l----------------- 162 (306)
T 2z66_A 101 EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF----------------- 162 (306)
T ss_dssp TTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE-----------------
T ss_pred CCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc-----------------
Confidence 88888888877 5555553 577778888888887763333334456666666664321100
Q ss_pred eeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCc-Cc
Q 043855 717 TLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPT-WL 795 (946)
Q Consensus 717 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~ 795 (946)
.....+..+..+++|+.|++++|.... ..+..+..+++|+.|++++|.+..+|. .+
T Consensus 163 ------------~~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 163 ------------QENFLPDIFTELRNLTFLDLSQCQLEQ-----------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp ------------GGGEECSCCTTCTTCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred ------------ccccchhHHhhCcCCCEEECCCCCcCC-----------cCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 000122334555666666666654443 113345556667777776666655543 23
Q ss_pred CCCCCCCccEEEEecCCCCCCCC-CCCCCC-CCceeeecccc
Q 043855 796 GDFSFSNLVTLKFEDCGMCTSLP-SVGQLP-SLKHLVVRRMS 835 (946)
Q Consensus 796 ~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~-~L~~L~L~~~~ 835 (946)
. .+++|+.|+|++|.+.+..| .+..+| +|+.|+|++|+
T Consensus 220 ~--~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 220 K--CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp T--TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred c--CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 2 45667777777666554444 355553 66666666653
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=1.3e-17 Score=190.62 Aligned_cols=220 Identities=25% Similarity=0.274 Sum_probs=139.1
Q ss_pred CceeEEEecCCCCccC-CccccCCCCCcEEeccCCCccccc-cchhcCCCCcEEecCCCCchhhchhh-hcccCccCeee
Q 043855 593 QRLRVFSLCGYEIFEL-PDSIGELRHLRYLNLSRTLIEVLP-ESVNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLN 669 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 669 (946)
++|++|+|++|.+..+ |..|+++.+|++|+|++|.+..++ ..|.++++|++|+|++| .+..+|.. +.++++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence 5789999999988876 567889999999999999988775 67888999999999998 56677654 78899999999
Q ss_pred cCCCCCcccccc-ccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEE
Q 043855 670 NSNTDSLEEMPI-GIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLL 748 (946)
Q Consensus 670 l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L 748 (946)
+++|. +..+|. .+.++++|+.|++..+....... ...+.++++|+.|+|
T Consensus 154 L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-----------------------------~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 154 LRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYIS-----------------------------EGAFEGLFNLKYLNL 203 (452)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEEC-----------------------------TTTTTTCTTCCEEEC
T ss_pred CCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccC-----------------------------hhhccCCCCCCEEEC
Confidence 99987 667765 47778888887654322211111 112344555555665
Q ss_pred EecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCC-CcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCC
Q 043855 749 RWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEF-PTWLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSL 826 (946)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L 826 (946)
++|.... ...+..+++|+.|++++|.+..+ |..+. .+++|+.|+|++|.+....+ .+..+++|
T Consensus 204 ~~n~l~~-------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 204 GMCNIKD-------------MPNLTPLVGLEELEMSGNHFPEIRPGSFH--GLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp TTSCCSS-------------CCCCTTCTTCCEEECTTSCCSEECGGGGT--TCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCcccc-------------cccccccccccEEECcCCcCcccCccccc--CccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 5554433 12344455666666666655544 33343 45566666666665543333 35556666
Q ss_pred ceeeeccccCceeeCccccCCCCCCcCCCcceeeccCC
Q 043855 827 KHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDM 864 (946)
Q Consensus 827 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 864 (946)
+.|+|++| .+..++...+. .+++|+.|+++++
T Consensus 269 ~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~L~~N 300 (452)
T 3zyi_A 269 VELNLAHN-NLSSLPHDLFT-----PLRYLVELHLHHN 300 (452)
T ss_dssp CEEECCSS-CCSCCCTTSST-----TCTTCCEEECCSS
T ss_pred CEEECCCC-cCCccChHHhc-----cccCCCEEEccCC
Confidence 66666654 33444333322 2555666666543
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=2.7e-19 Score=212.83 Aligned_cols=345 Identities=16% Similarity=0.130 Sum_probs=209.1
Q ss_pred cceeeccCCCCCCCccchhHHhhhhhc-ccCceeEEEecCCCCcc-----CCccccCCCCCcEEeccCCCcc-----ccc
Q 043855 564 CLRTFLPVNLPNSSRGLLAFRVLHQLL-RLQRLRVFSLCGYEIFE-----LPDSIGELRHLRYLNLSRTLIE-----VLP 632 (946)
Q Consensus 564 ~LrsL~~~~~~~~~~~~~~~~~~~~l~-~~~~Lr~L~L~~~~~~~-----lp~~i~~l~~Lr~L~Ls~~~i~-----~lp 632 (946)
+|+.|.+.++.. +....+..+. ++++|++|+|++|.+.. ++..+.++++|++|++++|.+. .++
T Consensus 139 ~L~~L~L~~~~~-----~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~ 213 (592)
T 3ogk_B 139 DLETLKLDKCSG-----FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE 213 (592)
T ss_dssp GCCEEEEESCEE-----EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH
T ss_pred cCcEEECcCCCC-----cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH
Confidence 388887766531 1222233333 78889999999887653 2334467888999999888875 455
Q ss_pred cchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCc---cccccccCCCCCCcccCceecCCCCCCChhccc
Q 043855 633 ESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSL---EEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELK 709 (946)
Q Consensus 633 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~---~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~ 709 (946)
..+.++++|++|++++| .+..+|..+.++++|++|+++++... ...+..++.+++|+.|.+.... .......+.
T Consensus 214 ~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~ 290 (592)
T 3ogk_B 214 TIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFP 290 (592)
T ss_dssp HHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGG
T ss_pred HHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHh
Confidence 56778899999999988 66778888888899999988754322 2333456677777777543321 111122344
Q ss_pred cccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEee----
Q 043855 710 LLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISG---- 785 (946)
Q Consensus 710 ~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~---- 785 (946)
.+++|+ .|.+..+. + ........+..+++|+.|++..+ .. ..........+++|++|++++
T Consensus 291 ~~~~L~-~L~Ls~~~-l--~~~~~~~~~~~~~~L~~L~L~~~-~~----------~~~l~~~~~~~~~L~~L~L~~g~~~ 355 (592)
T 3ogk_B 291 FAAQIR-KLDLLYAL-L--ETEDHCTLIQKCPNLEVLETRNV-IG----------DRGLEVLAQYCKQLKRLRIERGADE 355 (592)
T ss_dssp GGGGCC-EEEETTCC-C--CHHHHHHHHTTCTTCCEEEEEGG-GH----------HHHHHHHHHHCTTCCEEEEECCCCS
T ss_pred hcCCCc-EEecCCCc-C--CHHHHHHHHHhCcCCCEEeccCc-cC----------HHHHHHHHHhCCCCCEEEeecCccc
Confidence 566666 77776554 2 22233344677888999888742 11 112222334577899999983
Q ss_pred ------cC-CCC--CCcCcCCCCCCCccEEEEecCCCCCC-CCCCCC-CCCCceeeecc---ccCceeeCcc--ccCCCC
Q 043855 786 ------YG-GTE--FPTWLGDFSFSNLVTLKFEDCGMCTS-LPSVGQ-LPSLKHLVVRR---MSRVKRLGSE--FYGNDC 849 (946)
Q Consensus 786 ------~~-~~~--~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~-l~~L~~L~L~~---~~~l~~~~~~--~~~~~~ 849 (946)
+. +.. ++.... .+++|++|++..+.+.+. +..++. +++|+.|++++ |+.++..+.. +.. .
T Consensus 356 ~~~~~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~--~ 431 (592)
T 3ogk_B 356 QGMEDEEGLVSQRGLIALAQ--GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS--L 431 (592)
T ss_dssp STTSSTTCCCCHHHHHHHHH--HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH--H
T ss_pred cccccccCccCHHHHHHHHh--hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH--H
Confidence 32 211 111111 478899999966655432 223443 78899999874 4444433211 000 0
Q ss_pred CCcCCCcceeeccCCcc-cccccccCCCCCCCCCCcccEeeecCCcCccc-cCC---CCCCCCCEEEEcccccc----cc
Q 043855 850 PIPFLCLETLCFEDMRE-WEDWIPCGSSQGIELFPNLREFRILRCPKLQG-TLP---ERLPELKMFVIQSCEEL----LV 920 (946)
Q Consensus 850 ~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~-~lp---~~l~~L~~L~i~~c~~l----~~ 920 (946)
...+++|+.|++++|.+ +.+.. .... ...+|+|++|++++| ++++ .++ ..+++|+.|++++|+.- +.
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~-~~~~--~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLG-LSYI--GQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHH-HHHH--HHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHH-HHHH--HHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 12378899999876543 22111 0000 124788999999988 5653 122 56788999999988721 12
Q ss_pred cCCCCCCccEEEEcCCCCCC
Q 043855 921 SVTSLPTLCRFKIGGCKNVP 940 (946)
Q Consensus 921 ~l~~l~~L~~L~l~~c~~l~ 940 (946)
.+..+++|++|++++|+ ++
T Consensus 508 ~~~~l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYR-AS 526 (592)
T ss_dssp HHHHCSSCCEEEEESCB-CC
T ss_pred HHHhcCccCeeECcCCc-CC
Confidence 33468889999999886 44
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=187.99 Aligned_cols=220 Identities=24% Similarity=0.297 Sum_probs=138.9
Q ss_pred CceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCccccc-cchhcCCCCcEEecCCCCchhhchh-hhcccCccCeee
Q 043855 593 QRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVLP-ESVNKLYKLQTLLLEDCDRLKKLCA-SLGNLINLHHLN 669 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 669 (946)
+.+++|+|++|.+..++ ..|.++.+|++|+|++|.+..++ ..|.++++|++|+|++| .+..+|. .+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 67888999999888765 67888999999999999888775 56888999999999988 6777765 588889999999
Q ss_pred cCCCCCcccccc-ccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEE
Q 043855 670 NSNTDSLEEMPI-GIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLL 748 (946)
Q Consensus 670 l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L 748 (946)
+++|. +..+|. .+..+++|++|++..+....... ...+.++++|+.|+|
T Consensus 143 L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-----------------------------~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 143 LRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYIS-----------------------------EGAFEGLSNLRYLNL 192 (440)
T ss_dssp CCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEEC-----------------------------TTTTTTCSSCCEEEC
T ss_pred CCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeC-----------------------------cchhhcccccCeecC
Confidence 99887 666665 47778888877654322211111 112444555666666
Q ss_pred EecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCC-CcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCC
Q 043855 749 RWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEF-PTWLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSL 826 (946)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L 826 (946)
++|.... +..+..+++|+.|+|++|.+..+ |..+. .+++|+.|+|++|.+....+ .+..+++|
T Consensus 193 ~~n~l~~-------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 193 AMCNLRE-------------IPNLTPLIKLDELDLSGNHLSAIRPGSFQ--GLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp TTSCCSS-------------CCCCTTCSSCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred CCCcCcc-------------ccccCCCcccCEEECCCCccCccChhhhc--cCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 5554433 11244555666666666655544 33333 45666666666665443333 35556666
Q ss_pred ceeeeccccCceeeCccccCCCCCCcCCCcceeeccCC
Q 043855 827 KHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDM 864 (946)
Q Consensus 827 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 864 (946)
+.|+|++| .++.++...+. .+++|+.|++++.
T Consensus 258 ~~L~L~~N-~l~~~~~~~~~-----~l~~L~~L~L~~N 289 (440)
T 3zyj_A 258 VEINLAHN-NLTLLPHDLFT-----PLHHLERIHLHHN 289 (440)
T ss_dssp CEEECTTS-CCCCCCTTTTS-----SCTTCCEEECCSS
T ss_pred CEEECCCC-CCCccChhHhc-----cccCCCEEEcCCC
Confidence 66666654 34444433322 2556666666543
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=2.6e-20 Score=214.24 Aligned_cols=84 Identities=25% Similarity=0.273 Sum_probs=45.2
Q ss_pred ccCceeEEEecCCCCc-----cCCccccCCCCCcEEeccCCCcccc-ccch-hcCC----CCcEEecCCCCch----hhc
Q 043855 591 RLQRLRVFSLCGYEIF-----ELPDSIGELRHLRYLNLSRTLIEVL-PESV-NKLY----KLQTLLLEDCDRL----KKL 655 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~-----~lp~~i~~l~~Lr~L~Ls~~~i~~l-p~~i-~~L~----~L~~L~L~~~~~l----~~l 655 (946)
.+++|++|++++|.+. .+|..+..+++|++|+|++|.+... +..+ ..++ +|++|++++|... ..+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 5566666666666554 2345555566666666666655431 2222 2233 4666666666322 134
Q ss_pred hhhhcccCccCeeecCCCC
Q 043855 656 CASLGNLINLHHLNNSNTD 674 (946)
Q Consensus 656 p~~i~~L~~L~~L~l~~~~ 674 (946)
|..+.++++|++|++++|.
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHTTSCTTCCEEECCSSB
T ss_pred HHHHccCCceeEEECCCCc
Confidence 5556666666666666655
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=1.2e-17 Score=190.87 Aligned_cols=221 Identities=16% Similarity=0.160 Sum_probs=161.6
Q ss_pred ccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCccccccc-hhcCCC
Q 043855 563 VCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVLPES-VNKLYK 640 (946)
Q Consensus 563 ~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~ 640 (946)
++++.|.+.++. +....+..+.++++|++|+|++|.+..++ ..|.++.+|++|+|++|.++.+|.. +..+++
T Consensus 75 ~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMENN------IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148 (452)
T ss_dssp TTCSEEECCSSC------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred CCccEEECcCCc------CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence 578999988764 22323445669999999999999999765 7899999999999999999988765 889999
Q ss_pred CcEEecCCCCchhhchh-hhcccCccCeeecCCCCCccccccc-cCCCCCCcccCceecCCCCCCChhccccccccCCee
Q 043855 641 LQTLLLEDCDRLKKLCA-SLGNLINLHHLNNSNTDSLEEMPIG-IGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTL 718 (946)
Q Consensus 641 L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L 718 (946)
|++|+|++| .+..+|. .+.++++|++|++++|..+..+|.. +..+++|+.|++..+.... +.
T Consensus 149 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---~~------------ 212 (452)
T 3zyi_A 149 LRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---MP------------ 212 (452)
T ss_dssp CCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---CC------------
T ss_pred CCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---cc------------
Confidence 999999999 6777765 6889999999999998778888764 7888888888654332110 11
Q ss_pred EEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCC-CcCcCC
Q 043855 719 NISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEF-PTWLGD 797 (946)
Q Consensus 719 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~ 797 (946)
.+..+++|+.|+|++|.... ..+..+..+++|+.|++++|.+..+ |..+.
T Consensus 213 -----------------~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~- 263 (452)
T 3zyi_A 213 -----------------NLTPLVGLEELEMSGNHFPE-----------IRPGSFHGLSSLKKLWVMNSQVSLIERNAFD- 263 (452)
T ss_dssp -----------------CCTTCTTCCEEECTTSCCSE-----------ECGGGGTTCTTCCEEECTTSCCCEECTTTTT-
T ss_pred -----------------cccccccccEEECcCCcCcc-----------cCcccccCccCCCEEEeCCCcCceECHHHhc-
Confidence 13445667777777665543 1234556667777777777776654 33343
Q ss_pred CCCCCccEEEEecCCCCCCCC-CCCCCCCCceeeecccc
Q 043855 798 FSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMS 835 (946)
Q Consensus 798 ~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 835 (946)
.+++|+.|+|++|.+....+ .+..+++|+.|+|++|+
T Consensus 264 -~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 -GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred -CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 56778888888776543333 36677778888877664
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=1.9e-18 Score=187.60 Aligned_cols=270 Identities=14% Similarity=0.112 Sum_probs=181.1
Q ss_pred hhhhhc-ccCceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhccc
Q 043855 585 VLHQLL-RLQRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNL 662 (946)
Q Consensus 585 ~~~~l~-~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 662 (946)
.+..++ .+++|++|++++|.+..++ ..++++++|++|+|++|.+..++. +..+++|++|++++| .+..+| .+
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~ 98 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VG 98 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----EC
T ss_pred hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CC
Confidence 344444 6789999999999999876 679999999999999999987765 999999999999999 677665 34
Q ss_pred CccCeeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccc
Q 043855 663 INLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKN 742 (946)
Q Consensus 663 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~ 742 (946)
++|++|++++|. +..++.. .+++|++|.+..+... ...+..+..+++
T Consensus 99 ~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~------------------------------~~~~~~~~~l~~ 145 (317)
T 3o53_A 99 PSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKIT------------------------------MLRDLDEGCRSR 145 (317)
T ss_dssp TTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCC------------------------------SGGGBCTGGGSS
T ss_pred CCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCC------------------------------CccchhhhccCC
Confidence 899999999998 6666543 3566776654332111 011123445567
Q ss_pred cCceEEEecCCCCCCCchhhhhHHhHhccC-CCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCC
Q 043855 743 LKVLLLRWTCSTDDSSLREAETEKGVLTML-KPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVG 821 (946)
Q Consensus 743 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~ 821 (946)
|+.|++++|.... ..+..+ ..+++|+.|++++|.+..+|... .+++|++|+|++|.+....+.+.
T Consensus 146 L~~L~Ls~N~l~~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~ 211 (317)
T 3o53_A 146 VQYLDLKLNEIDT-----------VNFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQ 211 (317)
T ss_dssp EEEEECTTSCCCE-----------EEGGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGG
T ss_pred CCEEECCCCCCCc-----------ccHHHHhhccCcCCEEECCCCcCccccccc---ccccCCEEECCCCcCCcchhhhc
Confidence 7777777765543 112222 24577888888888777666544 36788888888887654444577
Q ss_pred CCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCC
Q 043855 822 QLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLP 901 (946)
Q Consensus 822 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp 901 (946)
.+++|+.|+|++| .++.++..+ ..+++|+.|++++++-....... ....+++|+.|++.+|+.+++..|
T Consensus 212 ~l~~L~~L~L~~N-~l~~l~~~~------~~l~~L~~L~l~~N~~~~~~~~~----~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 212 SAAGVTWISLRNN-KLVLIEKAL------RFSQNLEHFDLRGNGFHCGTLRD----FFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp GGTTCSEEECTTS-CCCEECTTC------CCCTTCCEEECTTCCCBHHHHHH----HHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred ccCcccEEECcCC-cccchhhHh------hcCCCCCEEEccCCCccCcCHHH----HHhccccceEEECCCchhccCCch
Confidence 7788888888876 455665543 23678888888875432111100 135678888888888877776555
Q ss_pred CCCCCCCEEEE--cccccc
Q 043855 902 ERLPELKMFVI--QSCEEL 918 (946)
Q Consensus 902 ~~l~~L~~L~i--~~c~~l 918 (946)
..+..-..... ..|..+
T Consensus 281 ~~~~~~~~~~~~~~cc~~l 299 (317)
T 3o53_A 281 EECTVPTLGHYGAYCCEDL 299 (317)
T ss_dssp CCCSSTTCEEETTEEEBCC
T ss_pred hccCCCceecccceeeccC
Confidence 54443333333 235554
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=188.45 Aligned_cols=221 Identities=14% Similarity=0.151 Sum_probs=163.7
Q ss_pred ccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCcccccc-chhcCCC
Q 043855 563 VCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVLPE-SVNKLYK 640 (946)
Q Consensus 563 ~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~ 640 (946)
++++.|.+.++. +....+..+.++++|++|+|++|.+..++ ..|.++.+|++|+|++|.++.+|. .+..+++
T Consensus 64 ~~l~~L~L~~n~------i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQ------IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCC------CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCcEEEccCCc------CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 578888887764 22222345669999999999999999876 679999999999999999999976 5999999
Q ss_pred CcEEecCCCCchhhchh-hhcccCccCeeecCCCCCccccccc-cCCCCCCcccCceecCCCCCCChhccccccccCCee
Q 043855 641 LQTLLLEDCDRLKKLCA-SLGNLINLHHLNNSNTDSLEEMPIG-IGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTL 718 (946)
Q Consensus 641 L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L 718 (946)
|++|+|++| .+..+|. .+.++++|++|++++|..+..++.. +..+++|++|++..+... .+.
T Consensus 138 L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---~~~------------ 201 (440)
T 3zyj_A 138 LKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIP------------ 201 (440)
T ss_dssp CCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS---SCC------------
T ss_pred CceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc---ccc------------
Confidence 999999999 6667765 6899999999999998778888764 788888888865433211 011
Q ss_pred EEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCc-CcCC
Q 043855 719 NISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPT-WLGD 797 (946)
Q Consensus 719 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~ 797 (946)
.+..+++|+.|+|++|.... .....+..+++|+.|++++|.+..++. .+.
T Consensus 202 -----------------~~~~l~~L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~- 252 (440)
T 3zyj_A 202 -----------------NLTPLIKLDELDLSGNHLSA-----------IRPGSFQGLMHLQKLWMIQSQIQVIERNAFD- 252 (440)
T ss_dssp -----------------CCTTCSSCCEEECTTSCCCE-----------ECTTTTTTCTTCCEEECTTCCCCEECTTSST-
T ss_pred -----------------ccCCCcccCEEECCCCccCc-----------cChhhhccCccCCEEECCCCceeEEChhhhc-
Confidence 14455677777777765543 123456667788888888877765543 343
Q ss_pred CCCCCccEEEEecCCCCCCCC-CCCCCCCCceeeecccc
Q 043855 798 FSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMS 835 (946)
Q Consensus 798 ~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 835 (946)
.+++|+.|+|++|.+....+ .+..+++|+.|+|++|+
T Consensus 253 -~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 253 -NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp -TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred -CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 57788888888887654333 36777888888887765
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=4.4e-19 Score=210.96 Aligned_cols=346 Identities=15% Similarity=0.138 Sum_probs=233.1
Q ss_pred ccccceeeccCCCCCCCccchhHHhhhhhcc-cCc-eeEEEecCCC-Cc--cCCccccCCCCCcEEeccCCCccc-----
Q 043855 561 DIVCLRTFLPVNLPNSSRGLLAFRVLHQLLR-LQR-LRVFSLCGYE-IF--ELPDSIGELRHLRYLNLSRTLIEV----- 630 (946)
Q Consensus 561 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~-~~~-Lr~L~L~~~~-~~--~lp~~i~~l~~Lr~L~Ls~~~i~~----- 630 (946)
.+++|+.|.+.++. +....+..+.. ++. |++|+|++|. +. .++..+.++++|++|+|++|.+..
T Consensus 110 ~~~~L~~L~L~~~~------i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI------VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp HCTTCCEEEEESCB------CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred hCCCCCeEEeeccE------ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence 67889999887653 33444555554 445 9999999986 22 234445688999999999998653
Q ss_pred cccchhcCCCCcEEecCCCCch----hhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCceecCCC--CCCC
Q 043855 631 LPESVNKLYKLQTLLLEDCDRL----KKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKD--SGSG 704 (946)
Q Consensus 631 lp~~i~~L~~L~~L~L~~~~~l----~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~--~~~~ 704 (946)
++..+..+++|++|++++|... ..++..+.++++|++|++++|. +..+|..++.+++|+.|.+...... ....
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHH
Confidence 4455678999999999998432 4677778899999999999987 7778888899999999976532211 1233
Q ss_pred hhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEe
Q 043855 705 LRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICIS 784 (946)
Q Consensus 705 ~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 784 (946)
...+..+++|+ .+.+... ....++..+..+++|++|+|++|.... ......+..+++|+.|+++
T Consensus 263 ~~~l~~~~~L~-~L~l~~~-----~~~~l~~~~~~~~~L~~L~Ls~~~l~~----------~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 263 YMNLVFPRKLC-RLGLSYM-----GPNEMPILFPFAAQIRKLDLLYALLET----------EDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp SSCCCCCTTCC-EEEETTC-----CTTTGGGGGGGGGGCCEEEETTCCCCH----------HHHHHHHTTCTTCCEEEEE
T ss_pred HHHhhcccccc-ccCcccc-----chhHHHHHHhhcCCCcEEecCCCcCCH----------HHHHHHHHhCcCCCEEecc
Confidence 34556666666 6666543 223455567788999999999876332 2233446778999999998
Q ss_pred ecCCC-CCCcCcCCCCCCCccEEEEec----------CCCCCC--CCC-CCCCCCCceeeeccccCceeeCccccCCCCC
Q 043855 785 GYGGT-EFPTWLGDFSFSNLVTLKFED----------CGMCTS--LPS-VGQLPSLKHLVVRRMSRVKRLGSEFYGNDCP 850 (946)
Q Consensus 785 ~~~~~-~~p~~~~~~~l~~L~~L~L~~----------~~~~~~--l~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 850 (946)
++... .++.... .+++|++|+|++ |...+. ++. ...+|+|+.|++. |+.++..+....+
T Consensus 327 ~~~~~~~l~~~~~--~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~---- 399 (592)
T 3ogk_B 327 NVIGDRGLEVLAQ--YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIG---- 399 (592)
T ss_dssp GGGHHHHHHHHHH--HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHH----
T ss_pred CccCHHHHHHHHH--hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHH----
Confidence 54221 1222222 578999999995 554432 222 3458999999994 4444432211111
Q ss_pred CcCCCcceeeccCCc---ccccccccC-C-CCCCCCCCcccEeeecCCcC-cccc----CCCCCCCCCEEEEcccccc--
Q 043855 851 IPFLCLETLCFEDMR---EWEDWIPCG-S-SQGIELFPNLREFRILRCPK-LQGT----LPERLPELKMFVIQSCEEL-- 918 (946)
Q Consensus 851 ~~~~~L~~L~l~~~~---~l~~~~~~~-~-~~~~~~~p~L~~L~l~~c~~-L~~~----lp~~l~~L~~L~i~~c~~l-- 918 (946)
..+++|+.|+++++. .+.+.. .. + ......+++|++|++++|.. +++. +...+++|+.|++++|..-
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p-~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 478 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLP-LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCC-CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH
T ss_pred hhCCCCcEEEEeecCCCccccCch-HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH
Confidence 127899999998543 333321 00 0 00023589999999998753 3321 2246899999999988632
Q ss_pred --cccCCCCCCccEEEEcCCC
Q 043855 919 --LVSVTSLPTLCRFKIGGCK 937 (946)
Q Consensus 919 --~~~l~~l~~L~~L~l~~c~ 937 (946)
+..+..+++|++|+|++|+
T Consensus 479 ~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 479 GLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHHHHTCCTTCCEEEEESCC
T ss_pred HHHHHHhcCcccCeeeccCCC
Confidence 2345788999999999997
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=8.8e-19 Score=190.18 Aligned_cols=260 Identities=15% Similarity=0.105 Sum_probs=190.3
Q ss_pred CceeEEEecCCCCccCCc-cccCCCCCcEEeccCCCccccc-cchhcCCCCcEEecCCCCchhhchhhhcccCccCeeec
Q 043855 593 QRLRVFSLCGYEIFELPD-SIGELRHLRYLNLSRTLIEVLP-ESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNN 670 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 670 (946)
..++.++++++.+...+. .+..+++|++|+|++|.++.++ ..+.++++|++|+|++| .+..++. +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEEC
Confidence 457777888887765443 3466789999999999999875 67999999999999999 5665555 899999999999
Q ss_pred CCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEe
Q 043855 671 SNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRW 750 (946)
Q Consensus 671 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 750 (946)
++|. +..+|. .++|++|.+..+. +. .+. ...+++|+.|++++
T Consensus 88 s~n~-l~~l~~----~~~L~~L~l~~n~---------------l~-~~~-----------------~~~~~~L~~L~l~~ 129 (317)
T 3o53_A 88 NNNY-VQELLV----GPSIETLHAANNN---------------IS-RVS-----------------CSRGQGKKNIYLAN 129 (317)
T ss_dssp CSSE-EEEEEE----CTTCCEEECCSSC---------------CS-EEE-----------------ECCCSSCEEEECCS
T ss_pred cCCc-cccccC----CCCcCEEECCCCc---------------cC-CcC-----------------ccccCCCCEEECCC
Confidence 9997 666553 3677776443221 10 000 11246799999999
Q ss_pred cCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCC-cCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCcee
Q 043855 751 TCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFP-TWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHL 829 (946)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 829 (946)
|.... .....+..+++|+.|++++|.+..++ ..+. ..+++|++|+|++|.+. .++....+++|+.|
T Consensus 130 N~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~-~~~~~~~l~~L~~L 196 (317)
T 3o53_A 130 NKITM-----------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTL 196 (317)
T ss_dssp SCCCS-----------GGGBCTGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCC-EEECCCCCTTCCEE
T ss_pred CCCCC-----------ccchhhhccCCCCEEECCCCCCCcccHHHHh-hccCcCCEEECCCCcCc-ccccccccccCCEE
Confidence 87765 22345667899999999999987653 3332 25799999999999864 34656669999999
Q ss_pred eeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCcc-ccCC---CCCC
Q 043855 830 VVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQ-GTLP---ERLP 905 (946)
Q Consensus 830 ~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~-~~lp---~~l~ 905 (946)
+|++| .+..++..+. .+++|+.|+++++. +..+. . ....+++|+.|++++|+ +. +.+| ..++
T Consensus 197 ~Ls~N-~l~~l~~~~~------~l~~L~~L~L~~N~-l~~l~-~----~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 197 DLSSN-KLAFMGPEFQ------SAAGVTWISLRNNK-LVLIE-K----ALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQ 262 (317)
T ss_dssp ECCSS-CCCEECGGGG------GGTTCSEEECTTSC-CCEEC-T----TCCCCTTCCEEECTTCC-CBHHHHHHHHHTCH
T ss_pred ECCCC-cCCcchhhhc------ccCcccEEECcCCc-ccchh-h----HhhcCCCCCEEEccCCC-ccCcCHHHHHhccc
Confidence 99986 5667766643 38999999999863 34332 1 14678999999999994 44 3444 3578
Q ss_pred CCCEEEEccccccc
Q 043855 906 ELKMFVIQSCEELL 919 (946)
Q Consensus 906 ~L~~L~i~~c~~l~ 919 (946)
+|+.|++.+|..+.
T Consensus 263 ~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 263 RVQTVAKQTVKKLT 276 (317)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cceEEECCCchhcc
Confidence 88888888776663
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=1.8e-17 Score=176.98 Aligned_cols=201 Identities=19% Similarity=0.195 Sum_probs=145.8
Q ss_pred cCceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCcccc-ccchhcCCCCcEEecCCCCchhhc-hhhhcccCccCee
Q 043855 592 LQRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVL-PESVNKLYKLQTLLLEDCDRLKKL-CASLGNLINLHHL 668 (946)
Q Consensus 592 ~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L 668 (946)
.+.|++|++++|.++.+| ..+.++++|++|+|++|.+..+ |..+.++++|++|++++|..+..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 357888888888888776 4678888899999988888876 667888888999999888546666 6678888889999
Q ss_pred ecCCCCCcccc-ccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceE
Q 043855 669 NNSNTDSLEEM-PIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLL 747 (946)
Q Consensus 669 ~l~~~~~~~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 747 (946)
++++|. +..+ |..++.+++|++|++..+... ......+..+++|+.|+
T Consensus 111 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------------~~~~~~~~~l~~L~~L~ 159 (285)
T 1ozn_A 111 HLDRCG-LQELGPGLFRGLAALQYLYLQDNALQ------------------------------ALPDDTFRDLGNLTHLF 159 (285)
T ss_dssp ECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCC------------------------------CCCTTTTTTCTTCCEEE
T ss_pred ECCCCc-CCEECHhHhhCCcCCCEEECCCCccc------------------------------ccCHhHhccCCCccEEE
Confidence 988887 5555 445677777777754332110 01112355667788888
Q ss_pred EEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCC-CcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCC
Q 043855 748 LRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEF-PTWLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPS 825 (946)
Q Consensus 748 L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~ 825 (946)
+++|.... .....+..+++|+.|++++|.+..+ |.++. .+++|+.|++++|.+.+..+ .+..+++
T Consensus 160 l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 160 LHGNRISS-----------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFR--DLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp CCSSCCCE-----------ECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred CCCCcccc-----------cCHHHhcCccccCEEECCCCcccccCHhHcc--CcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 88775543 1123466678899999998887765 66665 67899999999988665433 3788899
Q ss_pred CceeeeccccC
Q 043855 826 LKHLVVRRMSR 836 (946)
Q Consensus 826 L~~L~L~~~~~ 836 (946)
|+.|+|++|+.
T Consensus 227 L~~L~l~~N~~ 237 (285)
T 1ozn_A 227 LQYLRLNDNPW 237 (285)
T ss_dssp CCEEECCSSCE
T ss_pred cCEEeccCCCc
Confidence 99999988753
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=9.8e-19 Score=208.08 Aligned_cols=370 Identities=14% Similarity=0.104 Sum_probs=221.8
Q ss_pred cceeEEEEEeccCCCCccccccc-ccccceeeccCCCCCCCccchhHHhhhhhc-ccCceeEEEecCCCCcc-----CCc
Q 043855 538 QNLCHFSFIRGDYDGGKRFENLY-DIVCLRTFLPVNLPNSSRGLLAFRVLHQLL-RLQRLRVFSLCGYEIFE-----LPD 610 (946)
Q Consensus 538 ~~~r~ls~~~~~~~~~~~~~~~~-~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~-~~~~Lr~L~L~~~~~~~-----lp~ 610 (946)
..++++.+..... ....+..+. .+++|++|.+.++.. +....+..+. ++++|++|++++|.++. ++.
T Consensus 105 ~~L~~L~L~~~~~-~~~~~~~l~~~~~~L~~L~L~~~~~-----~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 105 TWLEEIRLKRMVV-TDDCLELIAKSFKNFKVLVLSSCEG-----FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp TTCCEEEEESCBC-CHHHHHHHHHHCTTCCEEEEESCEE-----EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred CCCCeEEeeCcEE-cHHHHHHHHHhCCCCcEEeCCCcCC-----CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 4567777765432 122233333 578899998876531 2233344455 78999999999987653 333
Q ss_pred cccCCCCCcEEeccCCC--cc--ccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCC------ccccc
Q 043855 611 SIGELRHLRYLNLSRTL--IE--VLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDS------LEEMP 680 (946)
Q Consensus 611 ~i~~l~~Lr~L~Ls~~~--i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~------~~~~p 680 (946)
....+++|++|++++|. +. .++..+.++++|++|++++|..+..+|..+.++++|++|++.++.. +..++
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 34577899999999886 22 3344456689999999999877778888889999999999776541 23444
Q ss_pred cccCCCCCCcccCceecCCCCCCChhc-cccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCc
Q 043855 681 IGIGKLTSLQTLCSFVVGKDSGSGLRE-LKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSL 759 (946)
Q Consensus 681 ~~i~~l~~L~~L~~~~~~~~~~~~~~~-L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~ 759 (946)
..++++++|+.|..+. ......+.. +..+++|+ .|.+..+. + ........+..+++|+.|.+.+| ..
T Consensus 259 ~~l~~~~~L~~Ls~~~--~~~~~~l~~~~~~~~~L~-~L~L~~~~-l--~~~~l~~~~~~~~~L~~L~l~~~-~~----- 326 (594)
T 2p1m_B 259 VALSGCKELRCLSGFW--DAVPAYLPAVYSVCSRLT-TLNLSYAT-V--QSYDLVKLLCQCPKLQRLWVLDY-IE----- 326 (594)
T ss_dssp HHHHTCTTCCEEECCB--TCCGGGGGGGHHHHTTCC-EEECTTCC-C--CHHHHHHHHTTCTTCCEEEEEGG-GH-----
T ss_pred HHHhcCCCcccccCCc--ccchhhHHHHHHhhCCCC-EEEccCCC-C--CHHHHHHHHhcCCCcCEEeCcCc-cC-----
Confidence 4567778887772111 111112221 22456666 67766554 2 22334444667889999999875 11
Q ss_pred hhhhhHHhHhccCCCCCCcceEEEeecC------CCCCCc----CcCCCCCCCccEEEEecCCCCCC-CCCCC-CCCCCc
Q 043855 760 REAETEKGVLTMLKPHKNLEQICISGYG------GTEFPT----WLGDFSFSNLVTLKFEDCGMCTS-LPSVG-QLPSLK 827 (946)
Q Consensus 760 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~------~~~~p~----~~~~~~l~~L~~L~L~~~~~~~~-l~~l~-~l~~L~ 827 (946)
..........+++|+.|+|.++. ...+.. .+. ..+++|+.|.+..+.+... +..+. .+|+|+
T Consensus 327 -----~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~-~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~ 400 (594)
T 2p1m_B 327 -----DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS-MGCPKLESVLYFCRQMTNAALITIARNRPNMT 400 (594)
T ss_dssp -----HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH-HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCC
T ss_pred -----HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH-HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcc
Confidence 11222222347789999996531 111110 010 1368899997766654322 22232 478999
Q ss_pred eeeec-----cccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCC-CCCcccEeeecCCcCccccCC
Q 043855 828 HLVVR-----RMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIE-LFPNLREFRILRCPKLQGTLP 901 (946)
Q Consensus 828 ~L~L~-----~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~p~L~~L~l~~c~~L~~~lp 901 (946)
.|+++ +|+.++..+..-.-......+++|+.|++++ .+.+.. .. ... .+++|+.|++++| .+++..+
T Consensus 401 ~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~-~~---~l~~~~~~L~~L~L~~~-~i~~~~~ 473 (594)
T 2p1m_B 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKV-FE---YIGTYAKKMEMLSVAFA-GDSDLGM 473 (594)
T ss_dssp EEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHH-HH---HHHHHCTTCCEEEEESC-CSSHHHH
T ss_pred eeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHH-HH---HHHHhchhccEeeccCC-CCcHHHH
Confidence 99998 4555553321100000012367899998866 332211 00 011 3788999999888 4543212
Q ss_pred ----CCCCCCCEEEEccccccc----ccCCCCCCccEEEEcCCCC
Q 043855 902 ----ERLPELKMFVIQSCEELL----VSVTSLPTLCRFKIGGCKN 938 (946)
Q Consensus 902 ----~~l~~L~~L~i~~c~~l~----~~l~~l~~L~~L~l~~c~~ 938 (946)
..+++|+.|++++|+.-. ..+..+++|+.|++++|+.
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 347889999998887531 2334578899999999864
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=2.5e-18 Score=186.19 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=52.1
Q ss_pred eeEEEecCCCCc--cCCcccc-------CCCCCcEEeccCCCcc-ccccch--hcCCCCcEEecCCCCchhhchhhhccc
Q 043855 595 LRVFSLCGYEIF--ELPDSIG-------ELRHLRYLNLSRTLIE-VLPESV--NKLYKLQTLLLEDCDRLKKLCASLGNL 662 (946)
Q Consensus 595 Lr~L~L~~~~~~--~lp~~i~-------~l~~Lr~L~Ls~~~i~-~lp~~i--~~L~~L~~L~L~~~~~l~~lp~~i~~L 662 (946)
|++|++++|.+. .+|..+. ++.+|++|+|++|.+. .+|..+ +.+++|++|++++| .+..+|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHH
Confidence 555566665553 2444443 5566666666666665 455554 56666666666665 444445555554
Q ss_pred -----CccCeeecCCCCCccccc-cccCCCCCCccc
Q 043855 663 -----INLHHLNNSNTDSLEEMP-IGIGKLTSLQTL 692 (946)
Q Consensus 663 -----~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L 692 (946)
++|++|++++|. +..++ ..++.+++|++|
T Consensus 144 ~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 178 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTL 178 (312)
T ss_dssp HTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEE
T ss_pred HHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEE
Confidence 566666666665 33333 334455554444
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=2.1e-17 Score=189.88 Aligned_cols=215 Identities=13% Similarity=0.137 Sum_probs=133.3
Q ss_pred ccCceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeee
Q 043855 591 RLQRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLN 669 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 669 (946)
.+++|++|+|++|.+..+| ..|+++++|++|+|++|.+..++. ++.+++|++|+|++| .+..+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEEE
Confidence 5668999999999998775 689999999999999999987665 899999999999998 6776664 38999999
Q ss_pred cCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEE
Q 043855 670 NSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLR 749 (946)
Q Consensus 670 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 749 (946)
+++|. +..+|.. .+++|+.|++..+.... ..+..+.++++|+.|+|+
T Consensus 106 L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~------------------------------~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 106 AANNN-ISRVSCS--RGQGKKNIYLANNKITM------------------------------LRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp CCSSC-CCCEEEC--CCSSCEEEECCSSCCCS------------------------------GGGBCGGGGSSEEEEECT
T ss_pred CcCCc-CCCCCcc--ccCCCCEEECCCCCCCC------------------------------CCchhhcCCCCCCEEECC
Confidence 99998 6666543 45677777554332111 111223344555555555
Q ss_pred ecCCCCCCCchhhhhHHhHhccCC-CCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCce
Q 043855 750 WTCSTDDSSLREAETEKGVLTMLK-PHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKH 828 (946)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 828 (946)
+|.... ..+..+. .+++|+.|++++|.+..+|... .+++|+.|+|++|.+.+..|.++.+++|+.
T Consensus 153 ~N~l~~-----------~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~ 218 (487)
T 3oja_A 153 LNEIDT-----------VNFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218 (487)
T ss_dssp TSCCCE-----------EEGGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCSE
T ss_pred CCCCCC-----------cChHHHhhhCCcccEEecCCCccccccccc---cCCCCCEEECCCCCCCCCCHhHcCCCCccE
Confidence 554332 1122222 3455666666665555544333 345666666666655443344555566666
Q ss_pred eeeccccCceeeCccccCCCCCCcCCCcceeeccCCc
Q 043855 829 LVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMR 865 (946)
Q Consensus 829 L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 865 (946)
|+|++| .+..+|..+ ..+++|+.|++++++
T Consensus 219 L~Ls~N-~l~~lp~~l------~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 219 ISLRNN-KLVLIEKAL------RFSQNLEHFDLRGNG 248 (487)
T ss_dssp EECTTS-CCCEECTTC------CCCTTCCEEECTTCC
T ss_pred EEecCC-cCcccchhh------ccCCCCCEEEcCCCC
Confidence 666654 233444332 124556666665543
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=3.5e-18 Score=184.97 Aligned_cols=202 Identities=19% Similarity=0.179 Sum_probs=146.6
Q ss_pred ccCceeEEEecCCCCc-cCCccc--cCCCCCcEEeccCCCccccccchhcC-----CCCcEEecCCCCchhhch-hhhcc
Q 043855 591 RLQRLRVFSLCGYEIF-ELPDSI--GELRHLRYLNLSRTLIEVLPESVNKL-----YKLQTLLLEDCDRLKKLC-ASLGN 661 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~-~lp~~i--~~l~~Lr~L~Ls~~~i~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp-~~i~~ 661 (946)
++++|++|++++|.+. .+|..+ +.+++|++|+|++|.++.+|..++.+ ++|++|++++| .+..+| ..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhcc
Confidence 6899999999999998 578776 89999999999999999888888887 99999999999 555555 78999
Q ss_pred cCccCeeecCCCCCccc--ccccc--CCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccC
Q 043855 662 LINLHHLNNSNTDSLEE--MPIGI--GKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQL 737 (946)
Q Consensus 662 L~~L~~L~l~~~~~~~~--~p~~i--~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l 737 (946)
+++|++|++++|...+. +|..+ +.+++|++|++..+.. ..+ .......+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l------~~~---------------------~~~~~~~~ 224 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM------ETP---------------------SGVCSALA 224 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC------CCH---------------------HHHHHHHH
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC------cch---------------------HHHHHHHH
Confidence 99999999999974433 33344 6777777775432211 100 01111123
Q ss_pred CcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCC
Q 043855 738 DGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSL 817 (946)
Q Consensus 738 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l 817 (946)
..+++|+.|++++|...... ....+..+++|+.|++++|.+..+|.++. ++|++|+|++|.+.+.
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~----------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~- 289 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAA----------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRN- 289 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSC----------CCSCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSC-
T ss_pred hcCCCCCEEECCCCcCCccc----------chhhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCCC-
Confidence 34567888888877655411 01234446788888888888888887663 7888888888876443
Q ss_pred CCCCCCCCCceeeecccc
Q 043855 818 PSVGQLPSLKHLVVRRMS 835 (946)
Q Consensus 818 ~~l~~l~~L~~L~L~~~~ 835 (946)
|.+..+++|+.|+|++|+
T Consensus 290 p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 290 PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCTTTSCEEEEEECTTCT
T ss_pred hhHhhCCCCCEEeccCCC
Confidence 668888888888888764
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=1.7e-16 Score=169.47 Aligned_cols=218 Identities=20% Similarity=0.197 Sum_probs=170.5
Q ss_pred eEEEecCCCCccCCccccCCCCCcEEeccCCCccccc-cchhcCCCCcEEecCCCCchhhc-hhhhcccCccCeeecCCC
Q 043855 596 RVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLP-ESVNKLYKLQTLLLEDCDRLKKL-CASLGNLINLHHLNNSNT 673 (946)
Q Consensus 596 r~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 673 (946)
++++++++.++.+|..+ ..+|++|+|++|.++.+| ..+.++++|++|++++| .+..+ |..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC
Confidence 68899999999999755 579999999999999887 46999999999999999 55555 778999999999999999
Q ss_pred CCcccc-ccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecC
Q 043855 674 DSLEEM-PIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTC 752 (946)
Q Consensus 674 ~~~~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 752 (946)
..+..+ |..+..+++|++|++..+.. ....+..+.++++|+.|++++|.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l------------------------------~~~~~~~~~~l~~L~~L~l~~n~ 140 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGL------------------------------QELGPGLFRGLAALQYLYLQDNA 140 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCC------------------------------CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcC------------------------------CEECHhHhhCCcCCCEEECCCCc
Confidence 656666 55678888888875432211 01112346677899999999987
Q ss_pred CCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcC-cCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceee
Q 043855 753 STDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTW-LGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLV 830 (946)
Q Consensus 753 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~ 830 (946)
... .....+..+++|+.|++++|.+..+|.. +. .+++|+.|+|++|.+.+..| .++.+++|+.|+
T Consensus 141 l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 207 (285)
T 1ozn_A 141 LQA-----------LPDDTFRDLGNLTHLFLHGNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207 (285)
T ss_dssp CCC-----------CCTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ccc-----------cCHhHhccCCCccEEECCCCcccccCHHHhc--CccccCEEECCCCcccccCHhHccCcccccEee
Confidence 664 1223467789999999999998887764 54 68999999999999876655 688999999999
Q ss_pred eccccCceeeCccccCCCCCCcCCCcceeeccCCc
Q 043855 831 VRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMR 865 (946)
Q Consensus 831 L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 865 (946)
+++| .+..++...+. .+++|+.|++++.+
T Consensus 208 l~~n-~l~~~~~~~~~-----~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 208 LFAN-NLSALPTEALA-----PLRALQYLRLNDNP 236 (285)
T ss_dssp CCSS-CCSCCCHHHHT-----TCTTCCEEECCSSC
T ss_pred CCCC-cCCcCCHHHcc-----cCcccCEEeccCCC
Confidence 9987 45555544333 38999999999865
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=1.7e-16 Score=171.15 Aligned_cols=195 Identities=19% Similarity=0.270 Sum_probs=142.8
Q ss_pred ccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeec
Q 043855 591 RLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNN 670 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 670 (946)
.+++|++|++++|.+..+| .+..+++|++|+|++|.+..+|. +..+++|++|++++| .+..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEEC
Confidence 5778888888888888887 58888889999998888888877 888888999999888 566665 5888888899988
Q ss_pred CCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEe
Q 043855 671 SNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRW 750 (946)
Q Consensus 671 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 750 (946)
++|. +..+|. ++.+++|++|++..+.... + ..+..+++|+.|+++.
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~---~-----------------------------~~l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLNQITN---I-----------------------------SPLAGLTNLQYLSIGN 160 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSSCCCC---C-----------------------------GGGGGCTTCCEEECCS
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCCccCc---C-----------------------------ccccCCCCccEEEccC
Confidence 8887 666654 7777777777543321100 0 0044556777777777
Q ss_pred cCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceee
Q 043855 751 TCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLV 830 (946)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 830 (946)
|.... ...+..+++|+.|++++|.+..+|. +. .+++|+.|+|++|.+. .++++..+++|+.|+
T Consensus 161 n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~-~~~~l~~l~~L~~L~ 223 (308)
T 1h6u_A 161 AQVSD-------------LTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQIS-DVSPLANTSNLFIVT 223 (308)
T ss_dssp SCCCC-------------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCC-BCGGGTTCTTCCEEE
T ss_pred CcCCC-------------ChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccC-ccccccCCCCCCEEE
Confidence 75543 1125667888899998888887775 33 6789999999988864 344588889999999
Q ss_pred eccccCceeeC
Q 043855 831 VRRMSRVKRLG 841 (946)
Q Consensus 831 L~~~~~l~~~~ 841 (946)
+++|+ +...+
T Consensus 224 l~~N~-i~~~~ 233 (308)
T 1h6u_A 224 LTNQT-ITNQP 233 (308)
T ss_dssp EEEEE-EECCC
T ss_pred ccCCe-eecCC
Confidence 98864 34433
No 76
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.66 E-value=7.5e-16 Score=174.04 Aligned_cols=312 Identities=11% Similarity=0.005 Sum_probs=187.5
Q ss_pred cccccchhHHHHHHHHH-hcCCCCCCCCcEEEEE--EecCCChHHHHHHHHhcccccc---ccCC-ceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELL-LRDDLMNDGGFSVLPI--VGMGGLGKTTLAQLVYNDDRVR---DHFD-LKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~F~-~~~wv~~~~~~~~~ 256 (946)
..++||++++++|.+++ .....+.......+.| +|++|+||||||+.+++..... ..|. .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999988 4321100013456777 9999999999999999843211 0122 35788877777889
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhC--CceEEEEEcCCCCCC------hhhHhhhhccCCCC---C--CCcE
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLS--GKKFLFVLDDVWNES------YNDWVELSHPFEAG---A--PGSK 323 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~w~~~~~~l~~~---~--~gs~ 323 (946)
.++..++.+++........+...+...+.+.+. +++++|||||+|... ...+..+...+... + ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 999999999866433223344555566666654 679999999997531 22333332322211 2 3445
Q ss_pred EEEEcCChhHHHhh--------CC-CCcEeCCCCChHHHHHHHHHhh---cCCCCCCCchhHHHHHHHHHHhcC------
Q 043855 324 IIVTTRNQGVAAIM--------GT-VPAYQLKKLSDHDCLALFARHS---LGTRDFSSHKSLEKIGREIVTKCD------ 385 (946)
Q Consensus 324 iivTtR~~~v~~~~--------~~-~~~~~l~~L~~~e~~~Lf~~~a---~~~~~~~~~~~l~~~~~~i~~~~~------ 385 (946)
||+||+...+...+ .. ...+.+.+++.++.+++|...+ +... .. -.+..+.|++.|+
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~---~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VW---EPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SC---CHHHHHHHHHHHCGGGTSC
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CC---ChHHHHHHHHHHHHhccCC
Confidence 88888766543211 11 1239999999999999997653 3211 11 1356778999999
Q ss_pred CChhHHHHHhhhhc------cC--CChHHHHHHHhhhcccCcccccccchhhhhhccCCChhHHHHhhhhccCC--CCCc
Q 043855 386 GLPLAAKTLGGLLR------GH--HDKCDWEGVLRAKIWELPEERASFIPDLAISYRHLPPTLKQCFAYCSLFP--KGYE 455 (946)
Q Consensus 386 GlPLai~~~~~~l~------~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~~ 455 (946)
|.|..+..+..... .. -+.+.+......... ...+.-++..||++.+.++..++.+. .+..
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 99976655543221 11 123333333221100 23355577899999999999888754 3345
Q ss_pred ccHHHHHHHHH--H-hCCccccCCCCcHHHHHHHHHHHHHhCcCCcccCC---CCCceEechhH
Q 043855 456 FEEKEIILLWS--A-VGFLDHVQSGNASEDLGRDIFRELCARSFFQESGE---DTSGFVMHDLV 513 (946)
Q Consensus 456 i~~~~li~~Wi--a-eg~i~~~~~~~~~e~~~~~~l~~L~~~~l~~~~~~---~~~~~~~Hdlv 513 (946)
+....+...|. + +- . ............|+++|+..++|..... ....|++|.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTM-Y---NVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp BCHHHHHHHHHHHHHHH-S---CCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred ccHHHHHHHHHHHHHhh-c---CCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 55555555442 2 11 1 0011224556789999999999977542 23456666655
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=7.4e-16 Score=164.34 Aligned_cols=199 Identities=21% Similarity=0.200 Sum_probs=127.5
Q ss_pred cccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCcccc-ccchhcCCCCcEEecCCCCchhhchhhhcccCccCee
Q 043855 590 LRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVL-PESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHL 668 (946)
Q Consensus 590 ~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 668 (946)
.++++|+.++++++.++.+|..+. .+|++|+|++|.+..+ |..+.++++|++|+|++| .+..+|.. ..+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 356677777777777777776554 5777777777777765 456777777777777777 56666553 677777777
Q ss_pred ecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEE
Q 043855 669 NNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLL 748 (946)
Q Consensus 669 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L 748 (946)
++++|. +..+|..+..+++|++|++..+... ...+..+.++++|+.|+|
T Consensus 83 ~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~------------------------------~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 83 DLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLT------------------------------SLPLGALRGLGELQELYL 131 (290)
T ss_dssp ECCSSC-CSSCCCCTTTCTTCCEEECCSSCCC------------------------------CCCSSTTTTCTTCCEEEC
T ss_pred ECCCCc-CCcCchhhccCCCCCEEECCCCcCc------------------------------ccCHHHHcCCCCCCEEEC
Confidence 777776 6677766666666666644322110 001122445566666676
Q ss_pred EecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCce
Q 043855 749 RWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKH 828 (946)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 828 (946)
++|..... ....+..+++|+.|++++|.+..+|..... .+++|+.|+|++|.+....+.+..+++|+.
T Consensus 132 ~~N~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~ 199 (290)
T 1p9a_G 132 KGNELKTL-----------PPGLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLYTIPKGFFGSHLLPF 199 (290)
T ss_dssp TTSCCCCC-----------CTTTTTTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCCCSE
T ss_pred CCCCCCcc-----------ChhhcccccCCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCCccChhhcccccCCe
Confidence 66655431 122345567777788877777777764432 567788888887776533335666677788
Q ss_pred eeecccc
Q 043855 829 LVVRRMS 835 (946)
Q Consensus 829 L~L~~~~ 835 (946)
|+|.+|+
T Consensus 200 l~L~~Np 206 (290)
T 1p9a_G 200 AFLHGNP 206 (290)
T ss_dssp EECCSCC
T ss_pred EEeCCCC
Confidence 8877664
No 78
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.66 E-value=1.2e-16 Score=141.69 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhc--ccCChHHHHHHHHHHHhHHhhhhhhhHHhhH
Q 043855 12 SVDLLLNKLASDEIRSFARQEQIQADLMKWEEMLVMSKAVLDDAEEK--KKTDNSVKLWLGELQSLVYDVEDLLDEFQTE 89 (946)
Q Consensus 12 ~v~~l~~~l~s~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lrd~ayd~ed~lD~~~~~ 89 (946)
+|+.+++||.+.+.+++....||++++++|+++|++|++||.+|+.+ +..|++++.|++||||+|||+|||||+|.|+
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888999999999999999999999999999999988 5679999999999999999999999999998
Q ss_pred H
Q 043855 90 A 90 (946)
Q Consensus 90 ~ 90 (946)
.
T Consensus 82 ~ 82 (115)
T 3qfl_A 82 V 82 (115)
T ss_dssp H
T ss_pred h
Confidence 6
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=3.6e-17 Score=188.03 Aligned_cols=241 Identities=16% Similarity=0.100 Sum_probs=173.8
Q ss_pred cCCccccCC----CCCcEEeccCCCccccc-cchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCcccccc
Q 043855 607 ELPDSIGEL----RHLRYLNLSRTLIEVLP-ESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPI 681 (946)
Q Consensus 607 ~lp~~i~~l----~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~ 681 (946)
.+|..+..+ ++|++|+|++|.+..+| ..|+++++|++|+|++| .+...++ +..+++|++|++++|. +..+|.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~ 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY-VQELLV 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSE-EEEEEE
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCc-CCCCCC
Confidence 345555444 48999999999999775 68999999999999999 5655554 8999999999999997 776664
Q ss_pred ccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchh
Q 043855 682 GIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLRE 761 (946)
Q Consensus 682 ~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~ 761 (946)
.++|++|++..+.. . .+ . ...+++|+.|+|++|....
T Consensus 98 ----~~~L~~L~L~~N~l---------------~-~~--------------~---~~~l~~L~~L~L~~N~l~~------ 134 (487)
T 3oja_A 98 ----GPSIETLHAANNNI---------------S-RV--------------S---CSRGQGKKNIYLANNKITM------ 134 (487)
T ss_dssp ----CTTCCEEECCSSCC---------------C-CE--------------E---ECCCSSCEEEECCSSCCCS------
T ss_pred ----CCCcCEEECcCCcC---------------C-CC--------------C---ccccCCCCEEECCCCCCCC------
Confidence 26677765432211 0 00 0 1124679999999987765
Q ss_pred hhhHHhHhccCCCCCCcceEEEeecCCCCC-CcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceeeeccccCceee
Q 043855 762 AETEKGVLTMLKPHKNLEQICISGYGGTEF-PTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVRRMSRVKRL 840 (946)
Q Consensus 762 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~ 840 (946)
..+..+..+++|+.|++++|.+... |..+.. .+++|+.|+|++|.+.+ +|....+++|+.|+|++| .+..+
T Consensus 135 -----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-~l~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~Ls~N-~l~~~ 206 (487)
T 3oja_A 135 -----LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-SSDTLEHLNLQYNFIYD-VKGQVVFAKLKTLDLSSN-KLAFM 206 (487)
T ss_dssp -----GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG-GTTTCCEEECTTSCCCE-EECCCCCTTCCEEECCSS-CCCEE
T ss_pred -----CCchhhcCCCCCCEEECCCCCCCCcChHHHhh-hCCcccEEecCCCcccc-ccccccCCCCCEEECCCC-CCCCC
Confidence 2344566789999999999998763 544431 57999999999999654 466667999999999986 56667
Q ss_pred CccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCC---CCCCCCCEEEEc
Q 043855 841 GSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLP---ERLPELKMFVIQ 913 (946)
Q Consensus 841 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp---~~l~~L~~L~i~ 913 (946)
+..+. .+++|+.|+++++. +..+. . ....+++|+.|++++|+-..+.+| ..++.|+.|.+.
T Consensus 207 ~~~~~------~l~~L~~L~Ls~N~-l~~lp-~----~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 207 GPEFQ------SAAGVTWISLRNNK-LVLIE-K----ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CGGGG------GGTTCSEEECTTSC-CCEEC-T----TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CHhHc------CCCCccEEEecCCc-Ccccc-h----hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 66643 38999999999854 33332 1 146789999999999954323444 345666666664
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=1.6e-15 Score=160.27 Aligned_cols=195 Identities=21% Similarity=0.268 Sum_probs=119.9
Q ss_pred ceeEEEecCCCCccCCccccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhchhh-hcccCccCeeecC
Q 043855 594 RLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLNNS 671 (946)
Q Consensus 594 ~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 671 (946)
.++.++++++.++.+|..+. .+|++|+|++|.+..+|. .+.++++|++|++++| .+..+|.. +.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence 35677777777777776554 567777777777777654 5777777777777777 55666654 4667777777777
Q ss_pred CCCCccccccc-cCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEe
Q 043855 672 NTDSLEEMPIG-IGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRW 750 (946)
Q Consensus 672 ~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 750 (946)
+|. +..+|.. +..+++|++|.+..+.. . ......+..+++|+.|+|++
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l---------------~---------------~~~~~~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 94 DNK-LQALPIGVFDQLVNLAELRLDRNQL---------------K---------------SLPPRVFDSLTKLTYLSLGY 142 (270)
T ss_dssp SSC-CCCCCTTTTTTCSSCCEEECCSSCC---------------C---------------CCCTTTTTTCTTCCEEECCS
T ss_pred CCc-CCcCCHhHcccccCCCEEECCCCcc---------------C---------------eeCHHHhCcCcCCCEEECCC
Confidence 776 5555543 45566666654322110 0 00111234555666666666
Q ss_pred cCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcC-cCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCce
Q 043855 751 TCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTW-LGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKH 828 (946)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~ 828 (946)
|..... ....+..+++|+.|++++|.+..+|.. +. .+++|+.|+|++|.+....+ .+..+++|+.
T Consensus 143 n~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 143 NELQSL-----------PKGVFDKLTSLKELRLYNNQLKRVPEGAFD--KLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp SCCCCC-----------CTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CcCCcc-----------CHhHccCCcccceeEecCCcCcEeChhHhc--cCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence 554431 112345567777777777777666653 32 56777777777776543333 3666777777
Q ss_pred eeecccc
Q 043855 829 LVVRRMS 835 (946)
Q Consensus 829 L~L~~~~ 835 (946)
|+|++|+
T Consensus 210 L~l~~N~ 216 (270)
T 2o6q_A 210 LQLQENP 216 (270)
T ss_dssp EECCSSC
T ss_pred EEecCCC
Confidence 7777664
No 81
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=5.2e-15 Score=163.17 Aligned_cols=292 Identities=15% Similarity=0.132 Sum_probs=178.3
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC------CH
Q 043855 182 NEAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF------DV 255 (946)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~------~~ 255 (946)
....++||++++++|.+++... +++.|+|++|+|||||++++++.. . .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 4567999999999999988531 689999999999999999999742 1 6777765432 55
Q ss_pred HHHHHHHHHHhcC-----------------CCCCCcccHHHHHHHHHHHhCC-ceEEEEEcCCCCCCh------hhHhhh
Q 043855 256 VRLIKVILRSFVA-----------------DPNVDNRDLILLQLQLKKQLSG-KKFLFVLDDVWNESY------NDWVEL 311 (946)
Q Consensus 256 ~~~~~~il~~l~~-----------------~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~------~~w~~~ 311 (946)
..++..+...+.. .......+...+...+.+.... ++.+|||||++..+. ..+...
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 5666666655432 0000123455566666665543 389999999976321 122222
Q ss_pred hccCCCCCCCcEEEEEcCChhH-HHh----------hCC-CCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHH
Q 043855 312 SHPFEAGAPGSKIIVTTRNQGV-AAI----------MGT-VPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGRE 379 (946)
Q Consensus 312 ~~~l~~~~~gs~iivTtR~~~v-~~~----------~~~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~ 379 (946)
...+.....+.++|+|++...+ ... .+. ...+++.+|+.+|+.+++......... ... .+.+..
T Consensus 155 L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~---~~~~~~ 230 (350)
T 2qen_A 155 FAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVP---ENEIEE 230 (350)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHH
T ss_pred HHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHH
Confidence 2221111247789999987654 221 011 236899999999999999875322111 111 356788
Q ss_pred HHHhcCCChhHHHHHhhhhccCCChHHHHH-HHhhhcccCcccccccchhhhhhccCC---ChhHHHHhhhhccCCCCCc
Q 043855 380 IVTKCDGLPLAAKTLGGLLRGHHDKCDWEG-VLRAKIWELPEERASFIPDLAISYRHL---PPTLKQCFAYCSLFPKGYE 455 (946)
Q Consensus 380 i~~~~~GlPLai~~~~~~l~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~cf~~~s~fp~~~~ 455 (946)
|++.|+|+|+++..++..+....+...+.. +.+. +...+.-.+..+ ++..+..+..+|. + .
T Consensus 231 i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~~~~~~~~~~l~~la~---g-~ 295 (350)
T 2qen_A 231 AVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV-----------AKGLIMGELEELRRRSPRYVDILRAIAL---G-Y 295 (350)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-C
T ss_pred HHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH-----------HHHHHHHHHHHHHhCChhHHHHHHHHHh---C-C
Confidence 999999999999999876532222222211 1110 111111111222 7888999999988 2 2
Q ss_pred ccHHHHHHHHHHhCCccccCCCCcHHHHHHHHHHHHHhCcCCcccCCCCCceE-echhHHHHH
Q 043855 456 FEEKEIILLWSAVGFLDHVQSGNASEDLGRDIFRELCARSFFQESGEDTSGFV-MHDLVNGLA 517 (946)
Q Consensus 456 i~~~~li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~~~l~~~~~~~~~~~~-~Hdlv~~~a 517 (946)
++...+....-+. . + .........+++.|++.+++...+ ..|. .|++++++.
T Consensus 296 ~~~~~l~~~~~~~-~-----~-~~~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 296 NRWSLIRDYLAVK-G-----T-KIPEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVL 348 (350)
T ss_dssp CSHHHHHHHHHHT-T-----C-CCCHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHH
T ss_pred CCHHHHHHHHHHH-h-----C-CCCHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHH
Confidence 3445554433221 1 0 112456778999999999998752 3454 577887764
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=1.3e-17 Score=182.93 Aligned_cols=82 Identities=24% Similarity=0.163 Sum_probs=56.5
Q ss_pred CceeEEEecCCCCccCCccccCCCCCcEEeccCCCccc--cccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeec
Q 043855 593 QRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEV--LPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNN 670 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 670 (946)
+.+++|++++|.+...+..+.++.+|++|+|++|.+.. +|..+.++++|++|++++|......|..+.++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 66777777777766655556677777777777776652 6666777777777777777434456666777777777777
Q ss_pred CCCC
Q 043855 671 SNTD 674 (946)
Q Consensus 671 ~~~~ 674 (946)
++|.
T Consensus 150 ~~~~ 153 (336)
T 2ast_B 150 SGCS 153 (336)
T ss_dssp TTCB
T ss_pred CCCC
Confidence 7763
No 83
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=1.3e-17 Score=198.50 Aligned_cols=373 Identities=15% Similarity=0.100 Sum_probs=221.4
Q ss_pred cceeEEEEEeccCCCCcccccc-cccccceeeccCCCCCCCccchhHHhhhhhc-ccCceeEEEecCCC--Cc--cCCcc
Q 043855 538 QNLCHFSFIRGDYDGGKRFENL-YDIVCLRTFLPVNLPNSSRGLLAFRVLHQLL-RLQRLRVFSLCGYE--IF--ELPDS 611 (946)
Q Consensus 538 ~~~r~ls~~~~~~~~~~~~~~~-~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~-~~~~Lr~L~L~~~~--~~--~lp~~ 611 (946)
.+.+++.+..+.......+..+ .++++|+.|.+.++.-.. .....+..+. .+++|++|++++|. +. .++..
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~---~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 206 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD---VSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC---CCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC---cchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence 5788888875422111122333 378999999998754100 1122233344 78899999999996 22 23333
Q ss_pred ccCCCCCcEEeccCC-CccccccchhcCCCCcEEecCCCC------chhhchhhhcccCccCee-ecCCCCCcccccccc
Q 043855 612 IGELRHLRYLNLSRT-LIEVLPESVNKLYKLQTLLLEDCD------RLKKLCASLGNLINLHHL-NNSNTDSLEEMPIGI 683 (946)
Q Consensus 612 i~~l~~Lr~L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~~~------~l~~lp~~i~~L~~L~~L-~l~~~~~~~~~p~~i 683 (946)
+.++++|++|+|++| .+..+|..+.++++|++|+++.|. .+..++..+.++++|+.| .+.+.. ...+|..+
T Consensus 207 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~ 285 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVY 285 (594)
T ss_dssp HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGH
T ss_pred HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHH
Confidence 456899999999998 566788899999999999977653 355677788889999988 454443 34555555
Q ss_pred CCCCCCcccCceecCCCCCCChhc-cccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCC---CCCCc
Q 043855 684 GKLTSLQTLCSFVVGKDSGSGLRE-LKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCST---DDSSL 759 (946)
Q Consensus 684 ~~l~~L~~L~~~~~~~~~~~~~~~-L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~---~~~~~ 759 (946)
..+++|++|++..+. ..+..+.. +..+++|+ .|.+.++ . ...........+++|+.|++..+... .....
T Consensus 286 ~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~-~L~l~~~--~--~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 286 SVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQ-RLWVLDY--I--EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp HHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCC-EEEEEGG--G--HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcC-EEeCcCc--c--CHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 677888888765554 22222222 34566676 7777654 1 12233333345788999988553100 00000
Q ss_pred hhhhhHHhHhccCCCCCCcceEEEeecCCCCC-CcCcCCCCCCCccEEEEe-----cCCCCCCCCC-------CCCCCCC
Q 043855 760 REAETEKGVLTMLKPHKNLEQICISGYGGTEF-PTWLGDFSFSNLVTLKFE-----DCGMCTSLPS-------VGQLPSL 826 (946)
Q Consensus 760 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~-----~~~~~~~l~~-------l~~l~~L 826 (946)
. ..........+++|+.|.+.++.+... +..+. ..+++|+.|+|+ +|...+..|. +..+++|
T Consensus 360 ~----~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~-~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L 434 (594)
T 2p1m_B 360 T----EQGLVSVSMGCPKLESVLYFCRQMTNAALITIA-RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL 434 (594)
T ss_dssp C----HHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH-HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC
T ss_pred C----HHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH-hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCc
Confidence 0 111111122367899997777665421 11111 146889999998 3444443332 4567889
Q ss_pred ceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCcccc----CCC
Q 043855 827 KHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGT----LPE 902 (946)
Q Consensus 827 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~----lp~ 902 (946)
+.|+|++ .+...+....+ ..+++|+.|+++++. +.+.. .... ...+|+|++|++++|+ +++. +..
T Consensus 435 ~~L~L~~--~l~~~~~~~l~----~~~~~L~~L~L~~~~-i~~~~-~~~l--~~~~~~L~~L~L~~n~-~~~~~~~~~~~ 503 (594)
T 2p1m_B 435 RRLSLSG--LLTDKVFEYIG----TYAKKMEMLSVAFAG-DSDLG-MHHV--LSGCDSLRKLEIRDCP-FGDKALLANAS 503 (594)
T ss_dssp CEEECCS--SCCHHHHHHHH----HHCTTCCEEEEESCC-SSHHH-HHHH--HHHCTTCCEEEEESCS-CCHHHHHHTGG
T ss_pred cEEeecC--cccHHHHHHHH----HhchhccEeeccCCC-CcHHH-HHHH--HhcCCCcCEEECcCCC-CcHHHHHHHHH
Confidence 9999965 33322111111 126789999998765 22111 0000 1358899999999995 3421 224
Q ss_pred CCCCCCEEEEccccccccc---C-CCCCCccEEEEcCC
Q 043855 903 RLPELKMFVIQSCEELLVS---V-TSLPTLCRFKIGGC 936 (946)
Q Consensus 903 ~l~~L~~L~i~~c~~l~~~---l-~~l~~L~~L~l~~c 936 (946)
.+++|+.|++++|+..... + ..+|+|+...+...
T Consensus 504 ~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 504 KLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp GGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred hCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 5788999999999764322 2 34677766665544
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=3.5e-15 Score=164.17 Aligned_cols=237 Identities=17% Similarity=0.119 Sum_probs=164.6
Q ss_pred eEEEecCCCCccCCccccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhchhh-hcccCccCeeecC-C
Q 043855 596 RVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLNNS-N 672 (946)
Q Consensus 596 r~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~-~ 672 (946)
++++.++++++++|..+ ..+|++|+|++|.|+.+|. .|.+|++|++|+|++|...+.+|.. +.++++|+++... +
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 67888899999999877 3689999999999999986 5899999999999999555667654 6788888775444 4
Q ss_pred CCCcccccc-ccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEec
Q 043855 673 TDSLEEMPI-GIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWT 751 (946)
Q Consensus 673 ~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 751 (946)
|. +..+|. .++.+++|++|.+..+....... ..+....++..|++..+
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~------------------------------~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 90 NN-LLYINPEAFQNLPNLQYLLISNTGIKHLPD------------------------------VHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp TT-CCEECTTSBCCCTTCCEEEEEEECCSSCCC------------------------------CTTCCBSSCEEEEEESC
T ss_pred Cc-ccccCchhhhhccccccccccccccccCCc------------------------------hhhcccchhhhhhhccc
Confidence 54 777754 47888888888665442211000 00112233445555442
Q ss_pred CCCCCCCchhhhhHHhHhccCCC-CCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC--CCCCCCCCce
Q 043855 752 CSTDDSSLREAETEKGVLTMLKP-HKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP--SVGQLPSLKH 828 (946)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~ 828 (946)
.... . .....+.. ...++.|++++|.+..+|.... ...+|+.|.+.+|...+.+| .++.+++|+.
T Consensus 139 ~~i~--~--------l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f--~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~ 206 (350)
T 4ay9_X 139 INIH--T--------IERNSFVGLSFESVILWLNKNGIQEIHNSAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206 (350)
T ss_dssp TTCC--E--------ECTTSSTTSBSSCEEEECCSSCCCEECTTSS--TTEEEEEEECTTCTTCCCCCTTTTTTEECCSE
T ss_pred cccc--c--------ccccchhhcchhhhhhccccccccCCChhhc--cccchhHHhhccCCcccCCCHHHhccCcccch
Confidence 1111 0 00112233 3468889999999988887665 45789999998877777777 3788999999
Q ss_pred eeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecC
Q 043855 829 LVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILR 892 (946)
Q Consensus 829 L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~ 892 (946)
|+|++| .++.++.. .|.+|+.|.+.++.+++.+.. ...+++|+.+++.+
T Consensus 207 LdLs~N-~l~~lp~~--------~~~~L~~L~~l~~~~l~~lP~------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 207 LDISRT-RIHSLPSY--------GLENLKKLRARSTYNLKKLPT------LEKLVALMEASLTY 255 (350)
T ss_dssp EECTTS-CCCCCCSS--------SCTTCCEEECTTCTTCCCCCC------TTTCCSCCEEECSC
T ss_pred hhcCCC-CcCccChh--------hhccchHhhhccCCCcCcCCC------chhCcChhhCcCCC
Confidence 999986 56766543 377888888888777766541 45788888888865
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=2.2e-15 Score=159.90 Aligned_cols=202 Identities=19% Similarity=0.132 Sum_probs=137.6
Q ss_pred CceeEEEecCCCCccCCc-cccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhch-hhhcccCccCeee
Q 043855 593 QRLRVFSLCGYEIFELPD-SIGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKLC-ASLGNLINLHHLN 669 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 669 (946)
+.|++|++++|.++.++. .+.++.+|++|+|++|.+..+|. .+.++++|++|++++| .+..++ ..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEE
Confidence 468888888888887764 78888888888888888887754 6888888888888888 455544 5688888888888
Q ss_pred cCCCCCcccccc-ccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEE
Q 043855 670 NSNTDSLEEMPI-GIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLL 748 (946)
Q Consensus 670 l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L 748 (946)
+++|. +..++. .++.+++|++|++..+.... ..++..+.++++|+.|++
T Consensus 107 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------------~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNLIQS-----------------------------FKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp CTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCC-----------------------------CCCCGGGGGCTTCCEEEC
T ss_pred CCCCC-ccccCchhcccCCCCCEEECcCCccce-----------------------------ecCchhhccCCCCCEEEC
Confidence 88887 555554 46777777777543321100 011234556677888888
Q ss_pred EecCCCCCCCchhhhhHHhHhccCCCCCCcc-eEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCC
Q 043855 749 RWTCSTDDSSLREAETEKGVLTMLKPHKNLE-QICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSL 826 (946)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L 826 (946)
++|.....+. ..+..+..++.|. .|++++|.+..+|.... ...+|+.|+|++|.+....+ .++.+++|
T Consensus 157 s~N~l~~~~~--------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 157 SSNKIQSIYC--------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp CSSCCCEECG--------GGGHHHHTCTTCCEEEECCSSCCCEECTTSS--CSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred CCCCCCcCCH--------HHhhhhhhccccceeeecCCCcccccCcccc--CCCcccEEECCCCceeecCHhHhcccccc
Confidence 7776543110 0111122223333 78888888887776554 44589999999988654433 36889999
Q ss_pred ceeeecccc
Q 043855 827 KHLVVRRMS 835 (946)
Q Consensus 827 ~~L~L~~~~ 835 (946)
+.|+|++|+
T Consensus 227 ~~L~l~~N~ 235 (276)
T 2z62_A 227 QKIWLHTNP 235 (276)
T ss_dssp CEEECCSSC
T ss_pred cEEEccCCc
Confidence 999999875
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=9.2e-16 Score=159.01 Aligned_cols=175 Identities=17% Similarity=0.162 Sum_probs=92.6
Q ss_pred ceeEEEecCCCCccCCc-cccCCCCCcEEeccCCC-cccccc-chhcCCCCcEEecCCCCchhhchh-hhcccCccCeee
Q 043855 594 RLRVFSLCGYEIFELPD-SIGELRHLRYLNLSRTL-IEVLPE-SVNKLYKLQTLLLEDCDRLKKLCA-SLGNLINLHHLN 669 (946)
Q Consensus 594 ~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~-i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 669 (946)
.|++|++++|.++.+|. .++++++|++|++++|. ++.+|. .+.++++|++|++++|+.+..+|. .+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45666666666665553 45566666666666664 555544 455666666666665224555543 355566666666
Q ss_pred cCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEE
Q 043855 670 NSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLR 749 (946)
Q Consensus 670 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 749 (946)
+++|. +..+|. ++.+++|+. |+.|+++
T Consensus 112 l~~n~-l~~lp~-~~~l~~L~~---------------------------------------------------L~~L~l~ 138 (239)
T 2xwt_C 112 IFNTG-LKMFPD-LTKVYSTDI---------------------------------------------------FFILEIT 138 (239)
T ss_dssp EEEEC-CCSCCC-CTTCCBCCS---------------------------------------------------EEEEEEE
T ss_pred CCCCC-Cccccc-ccccccccc---------------------------------------------------ccEEECC
Confidence 66655 444443 333332221 1234444
Q ss_pred ec-CCCCCCCchhhhhHHhHhccCCCCCCcc-eEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC--CCCCC-C
Q 043855 750 WT-CSTDDSSLREAETEKGVLTMLKPHKNLE-QICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP--SVGQL-P 824 (946)
Q Consensus 750 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l-~ 824 (946)
.| .... .....+..+++|+ .|++++|.+..+|.... ..++|+.|+|++|.....+| .+..+ +
T Consensus 139 ~N~~l~~-----------i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~ 205 (239)
T 2xwt_C 139 DNPYMTS-----------IPVNAFQGLCNETLTLKLYNNGFTSVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205 (239)
T ss_dssp SCTTCCE-----------ECTTTTTTTBSSEEEEECCSCCCCEECTTTT--TTCEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred CCcchhh-----------cCcccccchhcceeEEEcCCCCCcccCHhhc--CCCCCCEEEcCCCCCcccCCHHHhhcccc
Confidence 33 2221 0112244456666 77776666666665543 22567777777764223333 35566 6
Q ss_pred CCceeeeccc
Q 043855 825 SLKHLVVRRM 834 (946)
Q Consensus 825 ~L~~L~L~~~ 834 (946)
+|+.|++++|
T Consensus 206 ~L~~L~l~~N 215 (239)
T 2xwt_C 206 GPSLLDVSQT 215 (239)
T ss_dssp CCSEEECTTC
T ss_pred CCcEEECCCC
Confidence 7777777664
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=2.7e-15 Score=159.29 Aligned_cols=217 Identities=18% Similarity=0.192 Sum_probs=161.3
Q ss_pred EEEecCCCCccCCccccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhchh-hhcccCccCeeecCCCC
Q 043855 597 VFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKLCA-SLGNLINLHHLNNSNTD 674 (946)
Q Consensus 597 ~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 674 (946)
+.+..+..+..+|..+. .+|++|++++|.++.+|. .+.++++|++|++++| .+..+|. .+.++++|++|++++|.
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc
Confidence 45667778888998765 589999999999998876 7999999999999999 6666654 68999999999999998
Q ss_pred Cccccc-cccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCC
Q 043855 675 SLEEMP-IGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCS 753 (946)
Q Consensus 675 ~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 753 (946)
+..++ ..++.+++|++|.+..+... . .....+..+++|+.|++++|..
T Consensus 88 -l~~~~~~~~~~l~~L~~L~l~~n~l~---------------------~---------~~~~~~~~l~~L~~L~l~~n~l 136 (276)
T 2z62_A 88 -IQSLALGAFSGLSSLQKLVAVETNLA---------------------S---------LENFPIGHLKTLKELNVAHNLI 136 (276)
T ss_dssp -CCEECTTTTTTCTTCCEEECTTSCCC---------------------C---------STTCCCTTCTTCCEEECCSSCC
T ss_pred -cCccChhhhcCCccccEEECCCCCcc---------------------c---------cCchhcccCCCCCEEECcCCcc
Confidence 66665 45888888888854322110 0 0111256678899999998866
Q ss_pred CCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCc-CcCCCCCCCcc----EEEEecCCCCCCCCCCCCCCCCce
Q 043855 754 TDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPT-WLGDFSFSNLV----TLKFEDCGMCTSLPSVGQLPSLKH 828 (946)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~----~L~L~~~~~~~~l~~l~~l~~L~~ 828 (946)
... .++..+..+++|+.|++++|.+..+|. .+. .+++|+ +|++++|.+....+.....++|+.
T Consensus 137 ~~~----------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~ 204 (276)
T 2z62_A 137 QSF----------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR--VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE 204 (276)
T ss_dssp CCC----------CCCGGGGGCTTCCEEECCSSCCCEECGGGGH--HHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred cee----------cCchhhccCCCCCEEECCCCCCCcCCHHHhh--hhhhccccceeeecCCCcccccCccccCCCcccE
Confidence 541 123456678999999999999887653 332 344555 899999987655555555669999
Q ss_pred eeeccccCceeeCccccCCCCCCcCCCcceeeccCCc
Q 043855 829 LVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMR 865 (946)
Q Consensus 829 L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 865 (946)
|++++|. ++.++...+. .+++|+.|++++.+
T Consensus 205 L~L~~n~-l~~~~~~~~~-----~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 205 LALDTNQ-LKSVPDGIFD-----RLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSSC-CSCCCTTTTT-----TCCSCCEEECCSSC
T ss_pred EECCCCc-eeecCHhHhc-----ccccccEEEccCCc
Confidence 9999874 6666655433 38999999999764
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=2.9e-15 Score=155.23 Aligned_cols=73 Identities=21% Similarity=0.325 Sum_probs=56.5
Q ss_pred CCccCCccccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhchh-hhcccCccCeeecCC-CCCccccc
Q 043855 604 EIFELPDSIGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKLCA-SLGNLINLHHLNNSN-TDSLEEMP 680 (946)
Q Consensus 604 ~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~-~~~~~~~p 680 (946)
.++.+|. +. .+|++|++++|.++.+|. .+.++++|++|++++|..++.+|. .+.++++|++|++++ |. +..+|
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~ 97 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYID 97 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEEC
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcC
Confidence 4777887 54 389999999999988876 688899999999998844777765 578888888888887 54 55554
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.61 E-value=8.2e-16 Score=162.71 Aligned_cols=175 Identities=20% Similarity=0.223 Sum_probs=97.8
Q ss_pred ccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhh-hcccCccCeee
Q 043855 591 RLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLN 669 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 669 (946)
.+++|+.|++++|.+..++ .++.+++|++|++++|.+..++ .++++++|++|++++| .+..+|.. +.++++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEE
Confidence 5666777777777666654 3666777777777777766653 5666777777777766 44444433 56666677777
Q ss_pred cCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEE
Q 043855 670 NSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLR 749 (946)
Q Consensus 670 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 749 (946)
+++|. +..+|.. .+.++++|+.|+++
T Consensus 116 L~~n~-l~~~~~~-----------------------------------------------------~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 116 LVENQ-LQSLPDG-----------------------------------------------------VFDKLTNLTYLNLA 141 (272)
T ss_dssp CTTSC-CCCCCTT-----------------------------------------------------TTTTCTTCCEEECC
T ss_pred CCCCc-CCccCHH-----------------------------------------------------HhccCCCCCEEECC
Confidence 66665 3333321 12223344455555
Q ss_pred ecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCce
Q 043855 750 WTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKH 828 (946)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~ 828 (946)
+|.... .....+..+++|+.|++++|.+..+|.... ..+++|+.|++++|.+.+..+ .++.+++|+.
T Consensus 142 ~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (272)
T 3rfs_A 142 HNQLQS-----------LPKGVFDKLTNLTELDLSYNQLQSLPEGVF-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209 (272)
T ss_dssp SSCCCC-----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCccCc-----------cCHHHhccCccCCEEECCCCCcCccCHHHh-cCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence 543332 011223455666666666666555544321 145666666666665544333 2455666666
Q ss_pred eeeccc
Q 043855 829 LVVRRM 834 (946)
Q Consensus 829 L~L~~~ 834 (946)
|++++|
T Consensus 210 L~l~~N 215 (272)
T 3rfs_A 210 IWLHDN 215 (272)
T ss_dssp EECCSS
T ss_pred EEccCC
Confidence 666554
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=161.76 Aligned_cols=202 Identities=17% Similarity=0.129 Sum_probs=139.7
Q ss_pred ccCceeEEEecCCCCc-cCCccc--cCCCCCcEEeccCCCcccc-c----cchhcCCCCcEEecCCCCchhhchhhhccc
Q 043855 591 RLQRLRVFSLCGYEIF-ELPDSI--GELRHLRYLNLSRTLIEVL-P----ESVNKLYKLQTLLLEDCDRLKKLCASLGNL 662 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~-~lp~~i--~~l~~Lr~L~Ls~~~i~~l-p----~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 662 (946)
.++.|++|++++|.+. ..|..+ +++.+|++|+|++|.+... | ..+..+++|++|++++|......|..+.++
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 5677999999999987 456666 8999999999999998852 2 345679999999999994434444678899
Q ss_pred CccCeeecCCCCCccc--ccc--ccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCC
Q 043855 663 INLHHLNNSNTDSLEE--MPI--GIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLD 738 (946)
Q Consensus 663 ~~L~~L~l~~~~~~~~--~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~ 738 (946)
++|++|++++|...+. ++. .++.+++|++|.+..+.. ..+ .......+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l------~~l---------------------~~~~~~l~~ 221 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM------ETP---------------------TGVCAALAA 221 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC------CCH---------------------HHHHHHHHH
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC------Cch---------------------HHHHHHHHh
Confidence 9999999999973321 322 246777888775543211 000 000111134
Q ss_pred cccccCceEEEecCCCCCCCchhhhhHHhHhccCCC---CCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCC
Q 043855 739 GKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKP---HKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCT 815 (946)
Q Consensus 739 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 815 (946)
.+++|+.|+|++|..... .+..+.. +++|+.|++++|.+..+|..+. ++|+.|+|++|.+.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~-----------~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~----~~L~~L~Ls~N~l~- 285 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRAT-----------VNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP----AKLRVLDLSSNRLN- 285 (310)
T ss_dssp HTCCCSSEECTTSCCCCC-----------CCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC----SCCSCEECCSCCCC-
T ss_pred cCCCCCEEECCCCCCCcc-----------chhhHHhccCcCcCCEEECCCCCCCchhhhhc----CCCCEEECCCCcCC-
Confidence 556788888888766541 1222222 3688888888888888887663 68888888888754
Q ss_pred CCCCCCCCCCCceeeecccc
Q 043855 816 SLPSVGQLPSLKHLVVRRMS 835 (946)
Q Consensus 816 ~l~~l~~l~~L~~L~L~~~~ 835 (946)
.+|.+..+++|+.|+|++|+
T Consensus 286 ~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 286 RAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCTTSCCCCSCEECSSTT
T ss_pred CCchhhhCCCccEEECcCCC
Confidence 44556778888888888764
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=2.7e-15 Score=158.69 Aligned_cols=202 Identities=19% Similarity=0.271 Sum_probs=144.3
Q ss_pred cccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccc-hh
Q 043855 558 NLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPES-VN 636 (946)
Q Consensus 558 ~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~-i~ 636 (946)
....+++|+.|.+.++. ...++.+..+++|++|++++|.+..++ .++++++|++|+|++|.++.+|.. ++
T Consensus 36 ~~~~l~~L~~L~l~~~~--------i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~ 106 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSD--------IKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFD 106 (272)
T ss_dssp CHHHHTTCCEEECTTSC--------CCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred ccccccceeeeeeCCCC--------cccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhc
Confidence 44578889999887764 112345678999999999999998875 789999999999999999988665 79
Q ss_pred cCCCCcEEecCCCCchhhchhh-hcccCccCeeecCCCCCccccccc-cCCCCCCcccCceecCCCCCCChhcccccccc
Q 043855 637 KLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLNNSNTDSLEEMPIG-IGKLTSLQTLCSFVVGKDSGSGLRELKLLKHL 714 (946)
Q Consensus 637 ~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L 714 (946)
++++|++|++++| .+..+|.. +.++++|++|++++|. +..+|.. ++.+++|++|++
T Consensus 107 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l-------------------- 164 (272)
T 3rfs_A 107 KLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDL-------------------- 164 (272)
T ss_dssp TCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC--------------------
T ss_pred CCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEEC--------------------
Confidence 9999999999999 56666654 7899999999999997 6666654 455555555533
Q ss_pred CCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcC
Q 043855 715 HGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTW 794 (946)
Q Consensus 715 ~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~ 794 (946)
++|.... .....+..+++|+.|++++|.+..+|..
T Consensus 165 ----------------------------------~~n~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 165 ----------------------------------SYNQLQS-----------LPEGVFDKLTQLKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp ----------------------------------CSSCCCC-----------CCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ----------------------------------CCCCcCc-----------cCHHHhcCCccCCEEECCCCcCCccCHH
Confidence 2222211 0112234556777777777777666543
Q ss_pred cCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceeeeccccCceeeCc
Q 043855 795 LGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVRRMSRVKRLGS 842 (946)
Q Consensus 795 ~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~ 842 (946)
.. ..+++|+.|+|++|.+. +.+|+|+.|.++.+...+.+|.
T Consensus 200 ~~-~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 200 VF-DRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TT-TTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred HH-hCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccC
Confidence 22 15788888888888643 4466788888776654444443
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.59 E-value=3.5e-15 Score=160.77 Aligned_cols=194 Identities=19% Similarity=0.195 Sum_probs=148.8
Q ss_pred ccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcC
Q 043855 559 LYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKL 638 (946)
Q Consensus 559 ~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L 638 (946)
..++++|+.|.+.++. + ...+.+..+++|++|++++|.+..++. +.++++|++|+|++|.++.+| .+..+
T Consensus 37 ~~~l~~L~~L~l~~~~------i--~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l 106 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG------V--TTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGL 106 (308)
T ss_dssp HHHHHTCCEEECTTSC------C--CCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred HHHcCCcCEEEeeCCC------c--cCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCC
Confidence 3467788888887764 1 113356789999999999999999887 999999999999999999886 68999
Q ss_pred CCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCee
Q 043855 639 YKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTL 718 (946)
Q Consensus 639 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L 718 (946)
++|++|++++| .+..+|. +..+++|++|++++|. +..++. ++.+++|+.|++..+... .
T Consensus 107 ~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~------~----------- 165 (308)
T 1h6u_A 107 QSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVS------D----------- 165 (308)
T ss_dssp TTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCC------C-----------
T ss_pred CCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCC------C-----------
Confidence 99999999999 6777775 8999999999999998 777765 778888888755332110 0
Q ss_pred EEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCC
Q 043855 719 NISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDF 798 (946)
Q Consensus 719 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 798 (946)
... +..+++|+.|++++|..... ..+..+++|+.|++++|.+..+|. +.
T Consensus 166 --------------~~~-l~~l~~L~~L~l~~n~l~~~-------------~~l~~l~~L~~L~L~~N~l~~~~~-l~-- 214 (308)
T 1h6u_A 166 --------------LTP-LANLSKLTTLKADDNKISDI-------------SPLASLPNLIEVHLKNNQISDVSP-LA-- 214 (308)
T ss_dssp --------------CGG-GTTCTTCCEEECCSSCCCCC-------------GGGGGCTTCCEEECTTSCCCBCGG-GT--
T ss_pred --------------Chh-hcCCCCCCEEECCCCccCcC-------------hhhcCCCCCCEEEccCCccCcccc-cc--
Confidence 001 45567788888887766541 125567888899998888887774 43
Q ss_pred CCCCccEEEEecCCCC
Q 043855 799 SFSNLVTLKFEDCGMC 814 (946)
Q Consensus 799 ~l~~L~~L~L~~~~~~ 814 (946)
.+++|+.|+|++|.+.
T Consensus 215 ~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TCTTCCEEEEEEEEEE
T ss_pred CCCCCCEEEccCCeee
Confidence 6788999999988753
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=6e-14 Score=155.08 Aligned_cols=291 Identities=12% Similarity=0.103 Sum_probs=173.2
Q ss_pred cccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC-----CCHH
Q 043855 182 NEAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD-----FDVV 256 (946)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~ 256 (946)
....+|||+++++.|.+ +.. +++.|+|++|+|||||++++++. ... ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 44679999999999999 621 58999999999999999999974 222 2578887642 3444
Q ss_pred HHHHHHHHHhcC-------------CC-----CC----------CcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh---
Q 043855 257 RLIKVILRSFVA-------------DP-----NV----------DNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY--- 305 (946)
Q Consensus 257 ~~~~~il~~l~~-------------~~-----~~----------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--- 305 (946)
..+..+.+.+.. .. .. .......+...+.+..+ ++.+|||||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 444444433310 00 00 12344555555554433 499999999965321
Q ss_pred hhHhhhhccCCCCCCCcEEEEEcCChhHHHhh-----------CC-CCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhH
Q 043855 306 NDWVELSHPFEAGAPGSKIIVTTRNQGVAAIM-----------GT-VPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSL 373 (946)
Q Consensus 306 ~~w~~~~~~l~~~~~gs~iivTtR~~~v~~~~-----------~~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l 373 (946)
.+|......+.....+.++|+|++.......+ +. ...+.+.+|+.+|+.+++......... .. ..
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~-~~- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DF-KD- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CC-CC-
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CC-Cc-
Confidence 12222222222222467899999986542211 11 246899999999999999875321111 11 11
Q ss_pred HHHHHHHHHhcCCChhHHHHHhhhhccCCChHHHHHH-HhhhcccCcccccccchhhh-hhc--cCCChhHHHHhhhhcc
Q 043855 374 EKIGREIVTKCDGLPLAAKTLGGLLRGHHDKCDWEGV-LRAKIWELPEERASFIPDLA-ISY--RHLPPTLKQCFAYCSL 449 (946)
Q Consensus 374 ~~~~~~i~~~~~GlPLai~~~~~~l~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~k~cf~~~s~ 449 (946)
...|++.|+|+|+++..++..+....+...|..- .+.. ...+...+. +.+ ..||+..+..+..+|+
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-------KKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------HHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 1789999999999999998876533233333211 1100 000111111 111 1688899999999998
Q ss_pred CCCCCcccHHHHHHHHH-HhCCccccCCCCcHHHHHHHHHHHHHhCcCCcccCCCCCceE-echhHHHH
Q 043855 450 FPKGYEFEEKEIILLWS-AVGFLDHVQSGNASEDLGRDIFRELCARSFFQESGEDTSGFV-MHDLVNGL 516 (946)
Q Consensus 450 fp~~~~i~~~~li~~Wi-aeg~i~~~~~~~~~e~~~~~~l~~L~~~~l~~~~~~~~~~~~-~Hdlv~~~ 516 (946)
- . +...+....- ..|. .........+++.|++.++|...+ ..|+ .|++++++
T Consensus 302 g---~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~ 355 (357)
T 2fna_A 302 C---G--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLA 355 (357)
T ss_dssp C---B--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHH
T ss_pred C---C--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHh
Confidence 2 2 4444432210 1121 012345778999999999998753 3455 57888875
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=3.8e-14 Score=155.80 Aligned_cols=245 Identities=15% Similarity=0.056 Sum_probs=170.0
Q ss_pred ccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhh-hcccCccCeeecCCCCCccccccc-cCCCCCC
Q 043855 612 IGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLNNSNTDSLEEMPIG-IGKLTSL 689 (946)
Q Consensus 612 i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L 689 (946)
++.+. -++++.++++++++|..+ .++|++|+|++| .++.+|.. +.++++|++|++++|...+.+|.+ +.++++|
T Consensus 6 ~C~C~-~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 6 ICHCS-NRVFLCQESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp SSEEE-TTEEEEESTTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred ccEee-CCEEEecCCCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 34443 367889999999999877 479999999998 78899874 899999999999999855666654 5666666
Q ss_pred cccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHh
Q 043855 690 QTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVL 769 (946)
Q Consensus 690 ~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 769 (946)
.++.....+ +|. ...+..+..+++|+.|++++|.....+ .
T Consensus 82 ~~~l~~~~N--------------~l~---------------~l~~~~f~~l~~L~~L~l~~n~l~~~~-----------~ 121 (350)
T 4ay9_X 82 HEIRIEKAN--------------NLL---------------YINPEAFQNLPNLQYLLISNTGIKHLP-----------D 121 (350)
T ss_dssp CEEEEEEET--------------TCC---------------EECTTSBCCCTTCCEEEEEEECCSSCC-----------C
T ss_pred hhhhcccCC--------------ccc---------------ccCchhhhhccccccccccccccccCC-----------c
Confidence 554221111 010 111234677788999999988765421 1
Q ss_pred ccCCCCCCcceEEEeec-CCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceeeeccccCceeeCccccCCC
Q 043855 770 TMLKPHKNLEQICISGY-GGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVRRMSRVKRLGSEFYGND 848 (946)
Q Consensus 770 ~~l~~~~~L~~L~l~~~-~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 848 (946)
.......++..|++.++ .+..+|..........++.|+|++|.+....+.....++|+.|.+.+++.++.++...+..
T Consensus 122 ~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~- 200 (350)
T 4ay9_X 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG- 200 (350)
T ss_dssp CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTT-
T ss_pred hhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhcc-
Confidence 12233456777888664 4555554322112356889999998865433445566789999998888888887765443
Q ss_pred CCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCC--CCCCCCCEEEEcc
Q 043855 849 CPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLP--ERLPELKMFVIQS 914 (946)
Q Consensus 849 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp--~~l~~L~~L~i~~ 914 (946)
+++|+.|++++. ++..+. ...|.+|+.|.+.+|.+++ .+| ..+++|+.+++.+
T Consensus 201 ----l~~L~~LdLs~N-~l~~lp-------~~~~~~L~~L~~l~~~~l~-~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 201 ----ASGPVILDISRT-RIHSLP-------SYGLENLKKLRARSTYNLK-KLPTLEKLVALMEASLTY 255 (350)
T ss_dssp ----EECCSEEECTTS-CCCCCC-------SSSCTTCCEEECTTCTTCC-CCCCTTTCCSCCEEECSC
T ss_pred ----CcccchhhcCCC-CcCccC-------hhhhccchHhhhccCCCcC-cCCCchhCcChhhCcCCC
Confidence 789999999876 344443 3568889999998888888 788 4688888888854
No 95
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.56 E-value=2.8e-14 Score=150.76 Aligned_cols=198 Identities=17% Similarity=0.182 Sum_probs=139.7
Q ss_pred CCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchh-hhcccCccCeeecCCCCCccccccc-cCCCCCCcccC
Q 043855 616 RHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCA-SLGNLINLHHLNNSNTDSLEEMPIG-IGKLTSLQTLC 693 (946)
Q Consensus 616 ~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~ 693 (946)
.++++++++++.++.+|..+. ++|++|++++| .+..+|. .+.++++|++|++++|. +..+|.. +..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEE
Confidence 358899999999999998775 78999999999 6677765 68999999999999998 7788776 46788888875
Q ss_pred ceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCC
Q 043855 694 SFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLK 773 (946)
Q Consensus 694 ~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~ 773 (946)
+..+.. . ......+.++++|+.|++++|.... .....+.
T Consensus 92 l~~n~l---------------~---------------~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~~~ 130 (270)
T 2o6q_A 92 VTDNKL---------------Q---------------ALPIGVFDQLVNLAELRLDRNQLKS-----------LPPRVFD 130 (270)
T ss_dssp CCSSCC---------------C---------------CCCTTTTTTCSSCCEEECCSSCCCC-----------CCTTTTT
T ss_pred CCCCcC---------------C---------------cCCHhHcccccCCCEEECCCCccCe-----------eCHHHhC
Confidence 433211 0 0011234566788888888876554 1223456
Q ss_pred CCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceeeeccccCceeeCccccCCCCCCc
Q 043855 774 PHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIP 852 (946)
Q Consensus 774 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 852 (946)
.+++|+.|++++|.+..+|.... ..+++|+.|+|++|.+....+ .+..+++|+.|+|++| .++.++...+. .
T Consensus 131 ~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-----~ 203 (270)
T 2o6q_A 131 SLTKLTYLSLGYNELQSLPKGVF-DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFD-----S 203 (270)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTT-----T
T ss_pred cCcCCCEEECCCCcCCccCHhHc-cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhc-----c
Confidence 67888888888888877776532 167888888888887654433 3777888888888876 44555443322 2
Q ss_pred CCCcceeeccCCc
Q 043855 853 FLCLETLCFEDMR 865 (946)
Q Consensus 853 ~~~L~~L~l~~~~ 865 (946)
+++|+.|++++.+
T Consensus 204 l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 204 LEKLKMLQLQENP 216 (270)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEecCCC
Confidence 6677777776644
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=9.6e-17 Score=179.53 Aligned_cols=93 Identities=19% Similarity=0.157 Sum_probs=50.4
Q ss_pred cCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCC-----CCcCcCCCCCCCccEEEEec
Q 043855 736 QLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTE-----FPTWLGDFSFSNLVTLKFED 810 (946)
Q Consensus 736 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~ 810 (946)
.+..+++|+.|+|++|.... .....++..+..+++|+.|+|++|.+.. +|.++....+++|+.|+|++
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~-------~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTH-------LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY 283 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHH-------HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred HhhcCCCccEEECcCCCCCc-------HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcC
Confidence 44555666777776654321 1112344455566667777777666543 23333211356677777777
Q ss_pred CCCCC----CCC-CC-CCCCCCceeeecccc
Q 043855 811 CGMCT----SLP-SV-GQLPSLKHLVVRRMS 835 (946)
Q Consensus 811 ~~~~~----~l~-~l-~~l~~L~~L~L~~~~ 835 (946)
|.+.. .+| .+ .++|+|+.|+|++|+
T Consensus 284 n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 284 NEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp SCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 66544 244 23 446677777776653
No 97
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=3.1e-14 Score=151.69 Aligned_cols=199 Identities=18% Similarity=0.177 Sum_probs=151.1
Q ss_pred ccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhc-hhhhcccCccCeeecCCCCCccccccccCCCCCCc
Q 043855 612 IGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKL-CASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQ 690 (946)
Q Consensus 612 i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 690 (946)
++++.+|++++++++.++.+|..+. ++|++|++++| .+..+ |..+.++++|++|++++|. +..+|.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCC
Confidence 6788999999999999999998875 79999999999 45554 5679999999999999998 7777664 6777777
Q ss_pred ccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhc
Q 043855 691 TLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLT 770 (946)
Q Consensus 691 ~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 770 (946)
+|++..+.. . .++..+.++++|+.|++++|..... ...
T Consensus 81 ~L~Ls~N~l------~-------------------------~l~~~~~~l~~L~~L~l~~N~l~~l-----------~~~ 118 (290)
T 1p9a_G 81 TLDLSHNQL------Q-------------------------SLPLLGQTLPALTVLDVSFNRLTSL-----------PLG 118 (290)
T ss_dssp EEECCSSCC------S-------------------------SCCCCTTTCTTCCEEECCSSCCCCC-----------CSS
T ss_pred EEECCCCcC------C-------------------------cCchhhccCCCCCEEECCCCcCccc-----------CHH
Confidence 775533211 0 1122356678899999998876651 224
Q ss_pred cCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceeeeccccCceeeCccccCCCC
Q 043855 771 MLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDC 849 (946)
Q Consensus 771 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 849 (946)
.+..+++|+.|++++|.+..+|..... .+++|+.|+|++|.+....+ .+..+++|+.|+|++| .++.++..++.
T Consensus 119 ~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~--- 193 (290)
T 1p9a_G 119 ALRGLGELQELYLKGNELKTLPPGLLT-PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFG--- 193 (290)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT---
T ss_pred HHcCCCCCCEEECCCCCCCccChhhcc-cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcc---
Confidence 567788999999999998888765432 67899999999998654333 3678999999999986 56667665543
Q ss_pred CCcCCCcceeeccCCc
Q 043855 850 PIPFLCLETLCFEDMR 865 (946)
Q Consensus 850 ~~~~~~L~~L~l~~~~ 865 (946)
.++|+.|++.+.+
T Consensus 194 ---~~~L~~l~L~~Np 206 (290)
T 1p9a_G 194 ---SHLLPFAFLHGNP 206 (290)
T ss_dssp ---TCCCSEEECCSCC
T ss_pred ---cccCCeEEeCCCC
Confidence 5688888888654
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.55 E-value=1.6e-14 Score=154.20 Aligned_cols=98 Identities=20% Similarity=0.302 Sum_probs=77.6
Q ss_pred cccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeee
Q 043855 590 LRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLN 669 (946)
Q Consensus 590 ~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 669 (946)
..+++|+.|++++|.+..+|. +..+++|++|+|++|.++.+|. +.++++|++|++++| .+..+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 367788999999998888864 8888999999999999988876 888999999999988 6666654 88889999999
Q ss_pred cCCCCCccccccccCCCCCCcccC
Q 043855 670 NSNTDSLEEMPIGIGKLTSLQTLC 693 (946)
Q Consensus 670 l~~~~~~~~~p~~i~~l~~L~~L~ 693 (946)
+++|. +..++ .++.+++|+.|+
T Consensus 119 L~~n~-i~~~~-~l~~l~~L~~L~ 140 (291)
T 1h6t_A 119 LEHNG-ISDIN-GLVHLPQLESLY 140 (291)
T ss_dssp CTTSC-CCCCG-GGGGCTTCCEEE
T ss_pred CCCCc-CCCCh-hhcCCCCCCEEE
Confidence 99887 55553 355555555553
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=8.3e-16 Score=171.89 Aligned_cols=260 Identities=14% Similarity=0.089 Sum_probs=177.6
Q ss_pred ccccccccceeeccCCCCCCCccchhHHh----hhhhcccCceeEEEecCCCCcc----CCccc-------cCCCCCcEE
Q 043855 557 ENLYDIVCLRTFLPVNLPNSSRGLLAFRV----LHQLLRLQRLRVFSLCGYEIFE----LPDSI-------GELRHLRYL 621 (946)
Q Consensus 557 ~~~~~~~~LrsL~~~~~~~~~~~~~~~~~----~~~l~~~~~Lr~L~L~~~~~~~----lp~~i-------~~l~~Lr~L 621 (946)
..+..+++|++|.+.++. +.... ...+.++++|++|+|++|.+.. +|..+ .++++|++|
T Consensus 26 ~~l~~~~~L~~L~L~~n~------i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNT------IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHHHCSCCCEEECTTSE------ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHhcCCCccEEECCCCC------CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 345577889999988764 33332 2335589999999999986553 34444 789999999
Q ss_pred eccCCCccc-----cccchhcCCCCcEEecCCCCchh----hchhhhccc---------CccCeeecCCCCCcc--ccc-
Q 043855 622 NLSRTLIEV-----LPESVNKLYKLQTLLLEDCDRLK----KLCASLGNL---------INLHHLNNSNTDSLE--EMP- 680 (946)
Q Consensus 622 ~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~L---------~~L~~L~l~~~~~~~--~~p- 680 (946)
+|++|.+.. +|..+.++++|++|+|++|.... .++..+..+ ++|++|++++|. +. .+|
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~ 178 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKE 178 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHH
Confidence 999999886 78889999999999999995432 334445555 899999999998 43 444
Q ss_pred --cccCCCCCCcccCceecCCCCCC---Chh-ccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCC
Q 043855 681 --IGIGKLTSLQTLCSFVVGKDSGS---GLR-ELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCST 754 (946)
Q Consensus 681 --~~i~~l~~L~~L~~~~~~~~~~~---~~~-~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 754 (946)
..+..+++|++|.+..+...... .+. .+..+++|+ .|.+....-.......++..+..+++|+.|+|++|.+.
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~-~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK-VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC-EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCcc-EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 35678889999977655432111 122 455666776 77776543110011345567788999999999998765
Q ss_pred CCCCchhhhhHHhHhccC--CCCCCcceEEEeecCCCC-----CCcCcCCCCCCCccEEEEecCCCCCCCC---C-CCCC
Q 043855 755 DDSSLREAETEKGVLTML--KPHKNLEQICISGYGGTE-----FPTWLGDFSFSNLVTLKFEDCGMCTSLP---S-VGQL 823 (946)
Q Consensus 755 ~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~~~~~l~---~-l~~l 823 (946)
. .....++..+ ..+++|+.|+|++|.+.. +|.++.. .+++|++|+|++|.+....+ . ...+
T Consensus 258 ~-------~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~-~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 329 (386)
T 2ca6_A 258 A-------RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE-KMPDLLFLELNGNRFSEEDDVVDEIREVF 329 (386)
T ss_dssp H-------HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH-HCTTCCEEECTTSBSCTTSHHHHHHHHHH
T ss_pred h-------hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh-cCCCceEEEccCCcCCcchhHHHHHHHHh
Confidence 3 1112244555 348999999999999876 7776631 57999999999999765442 1 1224
Q ss_pred CCCceeeec
Q 043855 824 PSLKHLVVR 832 (946)
Q Consensus 824 ~~L~~L~L~ 832 (946)
+.++.+.+.
T Consensus 330 ~~~~~~~l~ 338 (386)
T 2ca6_A 330 STRGRGELD 338 (386)
T ss_dssp HHHTCCEEC
T ss_pred hhcCcchhh
Confidence 555545544
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=1.2e-15 Score=167.25 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=86.8
Q ss_pred ccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCcc--CCccccCCCCCcEEeccCCCcc-ccccchhcCC
Q 043855 563 VCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFE--LPDSIGELRHLRYLNLSRTLIE-VLPESVNKLY 639 (946)
Q Consensus 563 ~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~--lp~~i~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~ 639 (946)
++++.+.+.++. + ...++.++++++|++|++++|.+.. +|..+.++++|++|+|++|.+. ..|..+++++
T Consensus 70 ~~l~~L~l~~n~------l-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 142 (336)
T 2ast_B 70 QGVIAFRCPRSF------M-DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142 (336)
T ss_dssp TTCSEEECTTCE------E-CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred ccceEEEcCCcc------c-cccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence 667777766542 1 1123345678888888888887763 6777788888888888888877 5677788888
Q ss_pred CCcEEecCCCCchh--hchhhhcccCccCeeecCCCCCccc--cccccCCCC-CCcccCc
Q 043855 640 KLQTLLLEDCDRLK--KLCASLGNLINLHHLNNSNTDSLEE--MPIGIGKLT-SLQTLCS 694 (946)
Q Consensus 640 ~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~--~p~~i~~l~-~L~~L~~ 694 (946)
+|++|++++|..+. .+|..+.++++|++|++++|..+.. ++..++.++ +|++|++
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 88888888885444 3677778888888888888832443 344455565 6665543
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=1.2e-13 Score=144.01 Aligned_cols=97 Identities=26% Similarity=0.369 Sum_probs=75.9
Q ss_pred CceeEEEecCCCCccCCccccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhch-hhhcccCccCeeec
Q 043855 593 QRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKLC-ASLGNLINLHHLNN 670 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l 670 (946)
...++++++++.++.+|..+. .+|++|+|++|.+..++. .+.++++|++|+|++| .+..++ ..+.++++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence 457889999999999998776 689999999999987754 6899999999999998 555554 45788999999999
Q ss_pred CCCCCccccccc-cCCCCCCcccC
Q 043855 671 SNTDSLEEMPIG-IGKLTSLQTLC 693 (946)
Q Consensus 671 ~~~~~~~~~p~~-i~~l~~L~~L~ 693 (946)
++|. +..+|.. ++.+++|++|+
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCc-ccccChhHhcccCCCCEEE
Confidence 9987 6666543 45555555553
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=4.4e-14 Score=165.38 Aligned_cols=171 Identities=19% Similarity=0.223 Sum_probs=112.4
Q ss_pred cccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeee
Q 043855 590 LRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLN 669 (946)
Q Consensus 590 ~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 669 (946)
..+++|+.|++++|.+..+| .++.|++|++|+|++|.+..+|. +..|++|++|+|++| .+..+| .+..|++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 36677888888888887776 47788888888888888887766 778888888888887 566665 577888888888
Q ss_pred cCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEE
Q 043855 670 NSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLR 749 (946)
Q Consensus 670 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 749 (946)
+++|. +..+| .++.+++|+.|.+..+... . + ..+..+++|+.|+|+
T Consensus 116 Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~l~------~-------------------------l-~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 116 LEHNG-ISDIN-GLVHLPQLESLYLGNNKIT------D-------------------------I-TVLSRLTKLDTLSLE 161 (605)
T ss_dssp CTTSC-CCCCG-GGGGCTTCSEEECCSSCCC------C-------------------------C-GGGGSCTTCSEEECC
T ss_pred ecCCC-CCCCc-cccCCCccCEEECCCCccC------C-------------------------c-hhhcccCCCCEEECc
Confidence 88876 55543 3566666666643222100 0 0 124455667777777
Q ss_pred ecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCC
Q 043855 750 WTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMC 814 (946)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~ 814 (946)
.|.+.. ... +..+++|+.|+|++|.+..+|. +. .+++|+.|+|++|.+.
T Consensus 162 ~N~l~~------------~~~-l~~l~~L~~L~Ls~N~i~~l~~-l~--~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 162 DNQISD------------IVP-LAGLTKLQNLYLSKNHISDLRA-LA--GLKNLDVLELFSQECL 210 (605)
T ss_dssp SSCCCC------------CGG-GTTCTTCCEEECCSSCCCBCGG-GT--TCTTCSEEECCSEEEE
T ss_pred CCcCCC------------chh-hccCCCCCEEECcCCCCCCChH-Hc--cCCCCCEEEccCCcCc
Confidence 665543 111 4556677777777777666653 33 5677777777776653
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=8.2e-14 Score=161.14 Aligned_cols=180 Identities=19% Similarity=0.210 Sum_probs=130.1
Q ss_pred cCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecC
Q 043855 592 LQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNS 671 (946)
Q Consensus 592 ~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 671 (946)
+.+|++|+|++|.++.+|..+. .+|++|+|++|.++.+| ..+++|++|++++| .+..+|. +.+ +|++|+++
T Consensus 58 ~~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 58 INQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp HTTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred cCCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 3489999999999999998774 78999999999999998 56899999999998 6777888 665 99999999
Q ss_pred CCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEec
Q 043855 672 NTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWT 751 (946)
Q Consensus 672 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 751 (946)
+|. +..+|. .+++|+.|++..+... . ++. .+++|+.|+|++|
T Consensus 129 ~N~-l~~lp~---~l~~L~~L~Ls~N~l~------~-------------------------lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 129 NNQ-LTMLPE---LPALLEYINADNNQLT------M-------------------------LPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp SSC-CSCCCC---CCTTCCEEECCSSCCS------C-------------------------CCC---CCTTCCEEECCSS
T ss_pred CCc-CCCCCC---cCccccEEeCCCCccC------c-------------------------CCC---cCCCcCEEECCCC
Confidence 998 777876 5677777754332110 0 000 2356777888777
Q ss_pred CCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCc-------cEEEEecCCCCCCCC-CCCCC
Q 043855 752 CSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNL-------VTLKFEDCGMCTSLP-SVGQL 823 (946)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~l~-~l~~l 823 (946)
.... ++. +. ++|+.|+|++|.+..+|. +. .+| +.|+|++|.+. .+| .+..+
T Consensus 171 ~L~~------------lp~-l~--~~L~~L~Ls~N~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l 229 (571)
T 3cvr_A 171 QLTF------------LPE-LP--ESLEALDVSTNLLESLPA-VP----VRNHHSEETEIFFRCRENRIT-HIPENILSL 229 (571)
T ss_dssp CCSC------------CCC-CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred CCCC------------cch-hh--CCCCEEECcCCCCCchhh-HH----HhhhcccccceEEecCCCcce-ecCHHHhcC
Confidence 6554 112 22 678888888888888877 43 156 88888888765 455 46678
Q ss_pred CCCceeeeccccCcee
Q 043855 824 PSLKHLVVRRMSRVKR 839 (946)
Q Consensus 824 ~~L~~L~L~~~~~l~~ 839 (946)
++|+.|+|++|+..+.
T Consensus 230 ~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSR 245 (571)
T ss_dssp CTTEEEECCSSSCCHH
T ss_pred CCCCEEEeeCCcCCCc
Confidence 8888888887754333
No 104
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=2e-12 Score=144.28 Aligned_cols=295 Identities=12% Similarity=-0.014 Sum_probs=178.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc----cc--CCceEEEEeCCCC-CHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVR----DH--FDLKAWTCVSDDF-DVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~--F~~~~wv~~~~~~-~~~ 256 (946)
.+++||+++++++.+++..... ....+.+.|+|++|+||||||+.+++...-. .. ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988864211 1345689999999999999999999842111 01 2356788877766 888
Q ss_pred HHHHHHHHHhcCCCC-CCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhh-hccCCCCCCCcEEEEEcCChhHH
Q 043855 257 RLIKVILRSFVADPN-VDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVEL-SHPFEAGAPGSKIIVTTRNQGVA 334 (946)
Q Consensus 257 ~~~~~il~~l~~~~~-~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~-~~~l~~~~~gs~iivTtR~~~v~ 334 (946)
.++..++.++.+... ........+...+.+.+..++.+|||||++......+... ...+.....+..||+||+.....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 889999988843322 1223345566677777777666999999965321111111 11111111577899999875321
Q ss_pred ----Hhh--CCCCcEeCCCCChHHHHHHHHHhhcC-CCCCCCchhHHHHHHHHHHhcC---CChh-HHHHHhhhh--c--
Q 043855 335 ----AIM--GTVPAYQLKKLSDHDCLALFARHSLG-TRDFSSHKSLEKIGREIVTKCD---GLPL-AAKTLGGLL--R-- 399 (946)
Q Consensus 335 ----~~~--~~~~~~~l~~L~~~e~~~Lf~~~a~~-~~~~~~~~~l~~~~~~i~~~~~---GlPL-ai~~~~~~l--~-- 399 (946)
..+ .-...+.+.+++.++..++|...+.. -......+ +..+.|++.++ |.|. |+..+-... .
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 111 11238999999999999999987431 11111222 34566777777 8886 444433322 2
Q ss_pred -cCCChHHHHHHHhhhcccCcccccccchhhhhhccCCChhHHHHhhhhccCCCCCcccHHHHHHHHHHhCCccccCCCC
Q 043855 400 -GHHDKCDWEGVLRAKIWELPEERASFIPDLAISYRHLPPTLKQCFAYCSLFPKGYEFEEKEIILLWSAVGFLDHVQSGN 478 (946)
Q Consensus 400 -~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~Wiaeg~i~~~~~~~ 478 (946)
..-+.+++..++.... ...+.-++..|+++.+..+..++....+..+. +.. .-+++.+ ....
T Consensus 255 ~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~--~~~~~~~----g~~~ 317 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMY--TDLCNKF----KQKP 317 (384)
T ss_dssp SSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHH--HHHHHHT----TCCC
T ss_pred CCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHH--HHHHHHc----CCCC
Confidence 1235566666654421 12356677889988888777776611101111 111 1222211 0112
Q ss_pred cHHHHHHHHHHHHHhCcCCccc
Q 043855 479 ASEDLGRDIFRELCARSFFQES 500 (946)
Q Consensus 479 ~~e~~~~~~l~~L~~~~l~~~~ 500 (946)
.......++++.|...|+++..
T Consensus 318 ~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 318 LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEEE
Confidence 2346678899999999999864
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=5.2e-14 Score=147.60 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=62.5
Q ss_pred ccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeec
Q 043855 591 RLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNN 670 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 670 (946)
.+..+..++++++.++.++ .+.++.+|++|++++|.++.+| .+..+++|++|++++| .+..+|. +.++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 4555666677777777766 5677788888888888877776 6777888888888877 6666666 777888888888
Q ss_pred CCCCCccccc
Q 043855 671 SNTDSLEEMP 680 (946)
Q Consensus 671 ~~~~~~~~~p 680 (946)
++|. +..+|
T Consensus 93 ~~N~-l~~l~ 101 (263)
T 1xeu_A 93 NRNR-LKNLN 101 (263)
T ss_dssp CSSC-CSCCT
T ss_pred CCCc-cCCcC
Confidence 8776 55544
No 106
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.43 E-value=4.5e-12 Score=141.67 Aligned_cols=294 Identities=14% Similarity=0.050 Sum_probs=179.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc----ccCCceEEEEeCCCCCHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVR----DHFDLKAWTCVSDDFDVVRLI 259 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~ 259 (946)
..++||+.+++++..++...- .....+.+.|+|++|+||||+|+.+++...-. +.-...+|+++....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 679999999999999885431 12345688999999999999999999842111 001246788888888889999
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHh--CCceEEEEEcCCCCCChh--hHhhh---hccCCCC--CCCcEEEEEcCC
Q 043855 260 KVILRSFVADPNVDNRDLILLQLQLKKQL--SGKKFLFVLDDVWNESYN--DWVEL---SHPFEAG--APGSKIIVTTRN 330 (946)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~--~w~~~---~~~l~~~--~~gs~iivTtR~ 330 (946)
..++.+++............+...+.+.+ .+++.+|||||++..... ..+.+ ....... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 99999986644333344556566666666 356899999999653211 11222 2211111 345677888876
Q ss_pred hhHHH-----hhCCC--CcEeCCCCChHHHHHHHHHhhc---CCCCCCCchhHHHHHHHHHHhcC---CChh-HHHHHhh
Q 043855 331 QGVAA-----IMGTV--PAYQLKKLSDHDCLALFARHSL---GTRDFSSHKSLEKIGREIVTKCD---GLPL-AAKTLGG 396 (946)
Q Consensus 331 ~~v~~-----~~~~~--~~~~l~~L~~~e~~~Lf~~~a~---~~~~~~~~~~l~~~~~~i~~~~~---GlPL-ai~~~~~ 396 (946)
..... ..... ..+.+.+++.++..+++...+. .... ..+ +..+.|++.++ |.|- ++..+..
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~--~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGV--LDP---DVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTT--BCS---SHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCC--CCH---HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 53211 11112 4689999999999999987743 2211 122 34566777777 9993 3333332
Q ss_pred hhc-----c--CCChHHHHHHHhhhcccCcccccccchhhhhhccCCChhHHHHhhhhc-cCCCCCcccHHHHHHHHHH-
Q 043855 397 LLR-----G--HHDKCDWEGVLRAKIWELPEERASFIPDLAISYRHLPPTLKQCFAYCS-LFPKGYEFEEKEIILLWSA- 467 (946)
Q Consensus 397 ~l~-----~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s-~fp~~~~i~~~~li~~Wia- 467 (946)
... + .-+.+++..++.... ...+.-++..||.+.+..+..++ ++-....+....+.+....
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 221 1 124555555544321 12355577889998887776666 4432234555544333211
Q ss_pred ---hCCccccCCCCcHHHHHHHHHHHHHhCcCCccc
Q 043855 468 ---VGFLDHVQSGNASEDLGRDIFRELCARSFFQES 500 (946)
Q Consensus 468 ---eg~i~~~~~~~~~e~~~~~~l~~L~~~~l~~~~ 500 (946)
.| + .......+..++++|...|+++..
T Consensus 322 ~~~~~-~-----~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLG-L-----EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTT-C-----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcC-C-----CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 22 1 122356778899999999999874
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=3.5e-13 Score=143.70 Aligned_cols=121 Identities=21% Similarity=0.348 Sum_probs=97.7
Q ss_pred ccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcC
Q 043855 559 LYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKL 638 (946)
Q Consensus 559 ~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L 638 (946)
...+++|+.|.+.++. + ...+.+..+++|++|++++|.++.++. ++++++|++|+|++|.++.+|. +..+
T Consensus 42 ~~~l~~L~~L~l~~~~------i--~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l 111 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD------I--KSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDL 111 (291)
T ss_dssp HHHHHTCCEEECTTSC------C--CCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTC
T ss_pred hhhcCcccEEEccCCC------c--ccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccC
Confidence 4567888888887664 1 112456789999999999999999887 9999999999999999998765 9999
Q ss_pred CCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccC
Q 043855 639 YKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLC 693 (946)
Q Consensus 639 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 693 (946)
++|++|++++| .+..++ .+..+++|++|++++|. +..+ ..++.+++|++|+
T Consensus 112 ~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~ 162 (291)
T 1h6t_A 112 KKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLS 162 (291)
T ss_dssp TTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEE
T ss_pred CCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEE
Confidence 99999999999 677774 58899999999999997 6555 3455555555553
No 108
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.42 E-value=1.1e-11 Score=138.59 Aligned_cols=298 Identities=12% Similarity=-0.011 Sum_probs=185.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc-CCceEEEEeCCCCCHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDH-FDLKAWTCVSDDFDVVRLIKVI 262 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i 262 (946)
..++||+.+++++.+++.....+..+..+.+.|+|++|+||||||+.+++. .... -...+|+.++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 579999999999999886531101122348999999999999999999974 3222 1246788888888888999999
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHhC--CceEEEEEcCCCCCChhhHhhhhccCCCCC----CCcEEEEEcCChhHHHh
Q 043855 263 LRSFVADPNVDNRDLILLQLQLKKQLS--GKKFLFVLDDVWNESYNDWVELSHPFEAGA----PGSKIIVTTRNQGVAAI 336 (946)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~----~gs~iivTtR~~~v~~~ 336 (946)
+..++............+...+...+. +++.+|||||++..+......+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 998865433223345555555555553 568999999997765445555544443211 36678888877654332
Q ss_pred hC-------CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhc---------CCChhHHHHHhhhhc-
Q 043855 337 MG-------TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKC---------DGLPLAAKTLGGLLR- 399 (946)
Q Consensus 337 ~~-------~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~---------~GlPLai~~~~~~l~- 399 (946)
+. ....+.+.+++.++..+++...+....... .--.+..+.|++.+ +|.|-.+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 22 123699999999999999987653210000 11235677888888 788755444433211
Q ss_pred -----cC--CChHHHHHHHhhhcccCcccccccchhhhhhccCCChhHHHHhhhhccCC---CCCcccHHHHHHHHHH--
Q 043855 400 -----GH--HDKCDWEGVLRAKIWELPEERASFIPDLAISYRHLPPTLKQCFAYCSLFP---KGYEFEEKEIILLWSA-- 467 (946)
Q Consensus 400 -----~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp---~~~~i~~~~li~~Wia-- 467 (946)
+. -+.++...+..... ...+.-.+..||.+.+.++..++.+. .+..+....+...+-.
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 11 12222222222111 12234456778888888887777654 2225566666555433
Q ss_pred --hCCccccCCCCcHHHHHHHHHHHHHhCcCCcccC
Q 043855 468 --VGFLDHVQSGNASEDLGRDIFRELCARSFFQESG 501 (946)
Q Consensus 468 --eg~i~~~~~~~~~e~~~~~~l~~L~~~~l~~~~~ 501 (946)
.|.. ........+++++|...+++....
T Consensus 323 ~~~~~~------~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 323 EEYGER------PRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHTTCC------CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHcCCC------CCCHHHHHHHHHHHHhCCCeEEee
Confidence 1211 122456778999999999998753
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=4.6e-13 Score=156.76 Aligned_cols=178 Identities=22% Similarity=0.266 Sum_probs=138.6
Q ss_pred ccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcC
Q 043855 559 LYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKL 638 (946)
Q Consensus 559 ~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L 638 (946)
...+++|+.|.+.++. ...++.+..+++|+.|+|++|.+..+|. +++|.+|++|+|++|.+..+| .+..|
T Consensus 39 ~~~L~~L~~L~l~~n~--------i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l 108 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD--------IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDL 108 (605)
T ss_dssp HHHHTTCCCCBCTTCC--------CCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTC
T ss_pred hhcCCCCCEEECcCCC--------CCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccC
Confidence 4567788888887654 1123457789999999999999999887 999999999999999999887 79999
Q ss_pred CCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCee
Q 043855 639 YKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTL 718 (946)
Q Consensus 639 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L 718 (946)
++|++|+|++| .+..+| .+..|++|++|++++|. +..+ ..++.+++|+.|++..+...
T Consensus 109 ~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~------------------ 166 (605)
T 1m9s_A 109 KKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQIS------------------ 166 (605)
T ss_dssp TTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCC------------------
T ss_pred CCCCEEEecCC-CCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCC------------------
Confidence 99999999999 677765 58999999999999998 6666 45778888887754322110
Q ss_pred EEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCc
Q 043855 719 NISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWL 795 (946)
Q Consensus 719 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 795 (946)
. ... +..+++|+.|+|+.|.+.. +..+..+++|+.|+|++|.+...|...
T Consensus 167 ------------~-~~~-l~~l~~L~~L~Ls~N~i~~-------------l~~l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 167 ------------D-IVP-LAGLTKLQNLYLSKNHISD-------------LRALAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp ------------C-CGG-GTTCTTCCEEECCSSCCCB-------------CGGGTTCTTCSEEECCSEEEECCCCCC
T ss_pred ------------C-chh-hccCCCCCEEECcCCCCCC-------------ChHHccCCCCCEEEccCCcCcCCcccc
Confidence 0 001 5667889999999886654 234677899999999999877766543
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.41 E-value=3.4e-13 Score=134.90 Aligned_cols=100 Identities=16% Similarity=0.242 Sum_probs=66.4
Q ss_pred ccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeec
Q 043855 591 RLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNN 670 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 670 (946)
.+++|+.|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|......|..+.++++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 5667778888888777777 5777778888888877666554 6777777777777777433345666777777777777
Q ss_pred CCCCCccccccccCCCCCCccc
Q 043855 671 SNTDSLEEMPIGIGKLTSLQTL 692 (946)
Q Consensus 671 ~~~~~~~~~p~~i~~l~~L~~L 692 (946)
++|......|..++.+++|++|
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEE
T ss_pred cCCccCcHhHHHHhhCCCCCEE
Confidence 7776222233334444444444
No 111
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.41 E-value=9e-13 Score=142.23 Aligned_cols=203 Identities=14% Similarity=0.021 Sum_probs=120.9
Q ss_pred ccccceeeccCCCCCCCccchhHHhhhhh--cccCceeEEEecCCCCccC-C----ccccCCCCCcEEeccCCCccccc-
Q 043855 561 DIVCLRTFLPVNLPNSSRGLLAFRVLHQL--LRLQRLRVFSLCGYEIFEL-P----DSIGELRHLRYLNLSRTLIEVLP- 632 (946)
Q Consensus 561 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~l--~~~~~Lr~L~L~~~~~~~l-p----~~i~~l~~Lr~L~Ls~~~i~~lp- 632 (946)
.+++|+.|.+.++. +....+..+ ..+++|++|++++|.+... | ..+..+++|++|+|++|.+..+|
T Consensus 89 ~~~~L~~L~l~~n~------l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 162 (310)
T 4glp_A 89 AYSRLKELTLEDLK------ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC 162 (310)
T ss_dssp HHSCCCEEEEESCC------CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT
T ss_pred ccCceeEEEeeCCE------eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH
Confidence 34456777666543 222333344 5677777777777776642 2 23356777777777777777554
Q ss_pred cchhcCCCCcEEecCCCCchhh--chhh--hcccCccCeeecCCCCCccccccc----cCCCCCCcccCceecCCCCCCC
Q 043855 633 ESVNKLYKLQTLLLEDCDRLKK--LCAS--LGNLINLHHLNNSNTDSLEEMPIG----IGKLTSLQTLCSFVVGKDSGSG 704 (946)
Q Consensus 633 ~~i~~L~~L~~L~L~~~~~l~~--lp~~--i~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~~~~~~~~~~~~ 704 (946)
..++.+++|++|+|++|..... +|.. +.++++|++|++++|. +..+|.. ++.+++|++|++..+..... .
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~ 240 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRAT-V 240 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCC-C
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCcc-c
Confidence 4677777777777777733221 3222 3567777777777776 5544432 34556666664432211000 0
Q ss_pred hhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEe
Q 043855 705 LRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICIS 784 (946)
Q Consensus 705 ~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 784 (946)
.. ....+..+++|+.|+|++|.... ++..+ +++|+.|+++
T Consensus 241 p~--------------------------~~~~~~~~~~L~~L~Ls~N~l~~------------lp~~~--~~~L~~L~Ls 280 (310)
T 4glp_A 241 NP--------------------------SAPRCMWSSALNSLNLSFAGLEQ------------VPKGL--PAKLRVLDLS 280 (310)
T ss_dssp CS--------------------------CCSSCCCCTTCCCEECCSSCCCS------------CCSCC--CSCCSCEECC
T ss_pred hh--------------------------hHHhccCcCcCCEEECCCCCCCc------------hhhhh--cCCCCEEECC
Confidence 00 00012223577888887776654 22233 2689999999
Q ss_pred ecCCCCCCcCcCCCCCCCccEEEEecCCCC
Q 043855 785 GYGGTEFPTWLGDFSFSNLVTLKFEDCGMC 814 (946)
Q Consensus 785 ~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~ 814 (946)
+|.+..+|. +. .+++|+.|+|++|.+.
T Consensus 281 ~N~l~~~~~-~~--~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 281 SNRLNRAPQ-PD--ELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCCCSCCC-TT--SCCCCSCEECSSTTTS
T ss_pred CCcCCCCch-hh--hCCCccEEECcCCCCC
Confidence 999888776 33 6799999999998864
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.40 E-value=3.1e-14 Score=157.40 Aligned_cols=110 Identities=13% Similarity=0.118 Sum_probs=77.6
Q ss_pred hhhhhcccCceeEEEecCCCCccCC-----ccccCCC-CCcEEeccCCCcccc-ccchhcC-----CCCcEEecCCCCch
Q 043855 585 VLHQLLRLQRLRVFSLCGYEIFELP-----DSIGELR-HLRYLNLSRTLIEVL-PESVNKL-----YKLQTLLLEDCDRL 652 (946)
Q Consensus 585 ~~~~l~~~~~Lr~L~L~~~~~~~lp-----~~i~~l~-~Lr~L~Ls~~~i~~l-p~~i~~L-----~~L~~L~L~~~~~l 652 (946)
.+..+...++|++|+|++|.+...+ ..+.+++ +|++|+|++|.+... +..+..+ ++|++|+|++|...
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 3333335566999999999998776 5678888 899999999998865 5566665 99999999999433
Q ss_pred hhchhh----hccc-CccCeeecCCCCCccccccc-----cCC-CCCCcccCce
Q 043855 653 KKLCAS----LGNL-INLHHLNNSNTDSLEEMPIG-----IGK-LTSLQTLCSF 695 (946)
Q Consensus 653 ~~lp~~----i~~L-~~L~~L~l~~~~~~~~~p~~-----i~~-l~~L~~L~~~ 695 (946)
...+.. +..+ ++|++|++++|. ++..+.. +.. .++|++|++.
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEcc
Confidence 333443 4444 899999999998 6555432 223 2466666543
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=6.4e-13 Score=153.68 Aligned_cols=187 Identities=18% Similarity=0.159 Sum_probs=133.8
Q ss_pred cceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcE
Q 043855 564 CLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQT 643 (946)
Q Consensus 564 ~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~ 643 (946)
+++.|.+.++. +. .++..+ +++|++|+|++|.++.+| +.+.+|++|+|++|.++.+|. +.+ +|++
T Consensus 60 ~L~~L~Ls~n~------L~-~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLN------LS-SLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKH 124 (571)
T ss_dssp TCSEEECCSSC------CS-CCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCE
T ss_pred CccEEEeCCCC------CC-ccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCE
Confidence 67777776553 11 133334 378999999999999998 568899999999999999988 665 9999
Q ss_pred EecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecC
Q 043855 644 LLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKL 723 (946)
Q Consensus 644 L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l 723 (946)
|+|++| .+..+|. .+++|++|++++|. +..+|. .+++|++|++..+...
T Consensus 125 L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~----------------------- 173 (571)
T 3cvr_A 125 LDVDNN-QLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLT----------------------- 173 (571)
T ss_dssp EECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCS-----------------------
T ss_pred EECCCC-cCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCC-----------------------
Confidence 999998 6777887 68999999999998 777776 4667777754332110
Q ss_pred CCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccC-CCCCCcceEEEeecCCCCCCcCcCCCCCCC
Q 043855 724 ENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTML-KPHKNLEQICISGYGGTEFPTWLGDFSFSN 802 (946)
Q Consensus 724 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~ 802 (946)
. ++. +. ++|+.|+|++|.+...+.. ...+ ...+.|+.|++++|.+..+|.++. .+++
T Consensus 174 -~-------lp~-l~--~~L~~L~Ls~N~L~~lp~~---------~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~--~l~~ 231 (571)
T 3cvr_A 174 -F-------LPE-LP--ESLEALDVSTNLLESLPAV---------PVRNHHSEETEIFFRCRENRITHIPENIL--SLDP 231 (571)
T ss_dssp -C-------CCC-CC--TTCCEEECCSSCCSSCCCC---------C--------CCEEEECCSSCCCCCCGGGG--GSCT
T ss_pred -C-------cch-hh--CCCCEEECcCCCCCchhhH---------HHhhhcccccceEEecCCCcceecCHHHh--cCCC
Confidence 0 111 22 6788888888766542210 0011 222344999999999999999887 5899
Q ss_pred ccEEEEecCCCCCCCC
Q 043855 803 LVTLKFEDCGMCTSLP 818 (946)
Q Consensus 803 L~~L~L~~~~~~~~l~ 818 (946)
|+.|+|++|.+.+.+|
T Consensus 232 L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIR 247 (571)
T ss_dssp TEEEECCSSSCCHHHH
T ss_pred CCEEEeeCCcCCCcCH
Confidence 9999999999876554
No 114
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.37 E-value=4.8e-12 Score=131.87 Aligned_cols=173 Identities=17% Similarity=0.166 Sum_probs=119.7
Q ss_pred CCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhc-hhhhcccCccCeeecCCCCCccccccc-cCCCCCCcccC
Q 043855 616 RHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKL-CASLGNLINLHHLNNSNTDSLEEMPIG-IGKLTSLQTLC 693 (946)
Q Consensus 616 ~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~ 693 (946)
...++++++++.++.+|..+. ++|++|+|++| .+..+ |..+.++++|++|++++|. +..++.. +..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEE
Confidence 467899999999999998876 69999999999 45555 4568999999999999998 6665544 67777777775
Q ss_pred ceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCC
Q 043855 694 SFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLK 773 (946)
Q Consensus 694 ~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~ 773 (946)
+..+... ......+..+++|+.|+|++|..... ....+.
T Consensus 90 L~~n~l~------------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~~~ 128 (251)
T 3m19_A 90 LANNQLA------------------------------SLPLGVFDHLTQLDKLYLGGNQLKSL-----------PSGVFD 128 (251)
T ss_dssp CTTSCCC------------------------------CCCTTTTTTCTTCCEEECCSSCCCCC-----------CTTTTT
T ss_pred CCCCccc------------------------------ccChhHhcccCCCCEEEcCCCcCCCc-----------ChhHhc
Confidence 4322110 01112345567777788877765541 122345
Q ss_pred CCCCcceEEEeecCCCCCCc-CcCCCCCCCccEEEEecCCCCCCCC-CCCCCCCCceeeecccc
Q 043855 774 PHKNLEQICISGYGGTEFPT-WLGDFSFSNLVTLKFEDCGMCTSLP-SVGQLPSLKHLVVRRMS 835 (946)
Q Consensus 774 ~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 835 (946)
.+++|+.|++++|.+..+|. .+. .+++|+.|+|++|.+....+ .+..+++|+.|+|++|+
T Consensus 129 ~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 129 RLTKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 66778888888777777665 343 56778888887777654443 46777777777777764
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.37 E-value=6.8e-14 Score=154.63 Aligned_cols=232 Identities=10% Similarity=0.015 Sum_probs=136.2
Q ss_pred ccccceeeccCCCCCCCccchhHHhh----hhhcccC-ceeEEEecCCCCccC-CccccCC-----CCCcEEeccCCCcc
Q 043855 561 DIVCLRTFLPVNLPNSSRGLLAFRVL----HQLLRLQ-RLRVFSLCGYEIFEL-PDSIGEL-----RHLRYLNLSRTLIE 629 (946)
Q Consensus 561 ~~~~LrsL~~~~~~~~~~~~~~~~~~----~~l~~~~-~Lr~L~L~~~~~~~l-p~~i~~l-----~~Lr~L~Ls~~~i~ 629 (946)
..++|+.|.+.++. +....+ ..+.+++ +|++|+|++|.+... +..+..+ .+|++|+|++|.++
T Consensus 20 ~~~~L~~L~Ls~n~------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 20 IPHGVTSLDLSLNN------LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp SCTTCCEEECTTSC------GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred CCCCceEEEccCCC------CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 34458999888765 222222 4455777 899999999988764 4455554 89999999999988
Q ss_pred ccc-cc----hhcC-CCCcEEecCCCCchhhchh-h----hcc-cCccCeeecCCCCCcc-----ccccccCCCC-CCcc
Q 043855 630 VLP-ES----VNKL-YKLQTLLLEDCDRLKKLCA-S----LGN-LINLHHLNNSNTDSLE-----EMPIGIGKLT-SLQT 691 (946)
Q Consensus 630 ~lp-~~----i~~L-~~L~~L~L~~~~~l~~lp~-~----i~~-L~~L~~L~l~~~~~~~-----~~p~~i~~l~-~L~~ 691 (946)
..+ .. +..+ ++|++|++++| .+...+. . +.. .++|++|++++|. ++ .++..+..++ +|++
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~ 171 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNS 171 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccE
Confidence 554 33 4455 89999999998 4554432 2 334 3689999999987 54 2233334443 5666
Q ss_pred cCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcc-cccCceEEEecCCCCCCCchhhhhHHhHhc
Q 043855 692 LCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGK-KNLKVLLLRWTCSTDDSSLREAETEKGVLT 770 (946)
Q Consensus 692 L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 770 (946)
|++..+.. .. .....+...+..+ ++|+.|+|++|.... .....+..
T Consensus 172 L~Ls~n~l------~~--------------------~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~-------~~~~~l~~ 218 (362)
T 3goz_A 172 LNLRGNNL------AS--------------------KNCAELAKFLASIPASVTSLDLSANLLGL-------KSYAELAY 218 (362)
T ss_dssp EECTTSCG------GG--------------------SCHHHHHHHHHTSCTTCCEEECTTSCGGG-------SCHHHHHH
T ss_pred eeecCCCC------ch--------------------hhHHHHHHHHHhCCCCCCEEECCCCCCCh-------hHHHHHHH
Confidence 64322211 00 0011111223333 377777777765432 11112333
Q ss_pred cCCC-CCCcceEEEeecCCCCCCc-----CcCCCCCCCccEEEEecCCCCCC-------C-CCCCCCCCCceeeecccc
Q 043855 771 MLKP-HKNLEQICISGYGGTEFPT-----WLGDFSFSNLVTLKFEDCGMCTS-------L-PSVGQLPSLKHLVVRRMS 835 (946)
Q Consensus 771 ~l~~-~~~L~~L~l~~~~~~~~p~-----~~~~~~l~~L~~L~L~~~~~~~~-------l-~~l~~l~~L~~L~L~~~~ 835 (946)
.+.. +++|+.|+|++|.+...+. .+. .+++|+.|+|++|.+... + ..+..+++|+.|++++|.
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~--~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD--SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT--TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHh--cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3333 3578888888877665432 222 567788888887762211 1 135566777777777654
No 116
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=1.7e-11 Score=136.92 Aligned_cols=297 Identities=12% Similarity=0.037 Sum_probs=173.4
Q ss_pred ccccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccC---CceEEEEeCCCCCHHHHH
Q 043855 183 EAHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF---DLKAWTCVSDDFDVVRLI 259 (946)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~~~~~~~~ 259 (946)
+..++||+.+++.+.+++..... ......+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 36799999999999998864311 134568899999999999999999984 32221 246788877666777888
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHhC--CceEEEEEcCCCCCC----hhhHhhhhccCCC-CCCCcEEEEEcCChh
Q 043855 260 KVILRSFVADPNVDNRDLILLQLQLKKQLS--GKKFLFVLDDVWNES----YNDWVELSHPFEA-GAPGSKIIVTTRNQG 332 (946)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~w~~~~~~l~~-~~~gs~iivTtR~~~ 332 (946)
..++.+++........+...+...+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 888877754432223334555555555553 458999999995421 1222233222211 224556788887654
Q ss_pred HHHhhC-------CCCcEeCCCCChHHHHHHHHHhhcCCC-CCCCchhHHHHHHHHHHhcC---CChhHHHHH-hhhhc-
Q 043855 333 VAAIMG-------TVPAYQLKKLSDHDCLALFARHSLGTR-DFSSHKSLEKIGREIVTKCD---GLPLAAKTL-GGLLR- 399 (946)
Q Consensus 333 v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~a~~~~-~~~~~~~l~~~~~~i~~~~~---GlPLai~~~-~~~l~- 399 (946)
....+. ....+.+++++.++..+++...+.... ..... .++.+.|++.++ |.|..+..+ .....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 322211 114799999999999999987642111 11122 345566777776 999844433 22221
Q ss_pred ----c--CCChHHHHHHHhhhcccCcccccccchhhhhhccCCChhHHHHhhhhccCCC-C-CcccHHHHHHHH--HHhC
Q 043855 400 ----G--HHDKCDWEGVLRAKIWELPEERASFIPDLAISYRHLPPTLKQCFAYCSLFPK-G-YEFEEKEIILLW--SAVG 469 (946)
Q Consensus 400 ----~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s~fp~-~-~~i~~~~li~~W--iaeg 469 (946)
+ .-+.+++..++.... ...+.-++..+|.+.+..+..++...+ + ..+....+.+.+ +++.
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 123444544443321 123556677888888877776664222 1 223343332222 1211
Q ss_pred CccccCCCCcHHHHHHHHHHHHHhCcCCccc
Q 043855 470 FLDHVQSGNASEDLGRDIFRELCARSFFQES 500 (946)
Q Consensus 470 ~i~~~~~~~~~e~~~~~~l~~L~~~~l~~~~ 500 (946)
+ ............+++.|...++++..
T Consensus 322 ~----g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 L----GVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp H----TCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred c----CCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 0 00112235577899999999999764
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=1.4e-12 Score=136.69 Aligned_cols=100 Identities=25% Similarity=0.271 Sum_probs=84.9
Q ss_pred hhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCe
Q 043855 588 QLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHH 667 (946)
Q Consensus 588 ~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 667 (946)
.+..+++|++|++++|.+..+| .++.+.+|++|+|++|.++.+|. +.++++|++|++++| .+..+|.... ++|++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccE
Confidence 4557899999999999999998 68999999999999999999987 999999999999999 7777876433 89999
Q ss_pred eecCCCCCccccccccCCCCCCcccCc
Q 043855 668 LNNSNTDSLEEMPIGIGKLTSLQTLCS 694 (946)
Q Consensus 668 L~l~~~~~~~~~p~~i~~l~~L~~L~~ 694 (946)
|++++|. +..+| .++.+++|+.|++
T Consensus 111 L~L~~N~-l~~~~-~l~~l~~L~~L~L 135 (263)
T 1xeu_A 111 LFLDNNE-LRDTD-SLIHLKNLEILSI 135 (263)
T ss_dssp EECCSSC-CSBSG-GGTTCTTCCEEEC
T ss_pred EEccCCc-cCCCh-hhcCcccccEEEC
Confidence 9999997 66665 4777777777744
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=6.6e-12 Score=127.68 Aligned_cols=93 Identities=23% Similarity=0.361 Sum_probs=73.6
Q ss_pred eEEEecCCCCccCCccccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhc-hhhhcccCccCeeecCCC
Q 043855 596 RVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKL-CASLGNLINLHHLNNSNT 673 (946)
Q Consensus 596 r~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 673 (946)
+.++++++.++.+|..+. .+|++|+|++|.|+.+|. .|..+++|++|+|++| .+..+ |..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence 578899999999988765 689999999999998865 6888999999999998 55555 777899999999999998
Q ss_pred CCccccccc-cCCCCCCccc
Q 043855 674 DSLEEMPIG-IGKLTSLQTL 692 (946)
Q Consensus 674 ~~~~~~p~~-i~~l~~L~~L 692 (946)
. +..+|.. +..+++|++|
T Consensus 91 ~-l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 91 K-ITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp C-CCCCCTTTTTTCTTCCEE
T ss_pred c-CCccCHhHccCCCCCCEE
Confidence 7 6666654 3444444444
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.31 E-value=5.6e-12 Score=127.25 Aligned_cols=93 Identities=28% Similarity=0.422 Sum_probs=66.0
Q ss_pred eEEEecCCCCccCCccccCCCCCcEEeccCCCccccccc-hhcCCCCcEEecCCCCchhhchhh-hcccCccCeeecCCC
Q 043855 596 RVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPES-VNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLNNSNT 673 (946)
Q Consensus 596 r~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 673 (946)
+.++++++.++.+|..+ ..+|++|++++|.++.+|.. +.++++|++|++++| .+..+|.. +..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 46677777888787655 35888888888888877654 678888888888887 56666554 577888888888887
Q ss_pred CCccccccc-cCCCCCCccc
Q 043855 674 DSLEEMPIG-IGKLTSLQTL 692 (946)
Q Consensus 674 ~~~~~~p~~-i~~l~~L~~L 692 (946)
. +..+|.. ++.+++|++|
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 87 Q-LQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp C-CCCCCTTTTTTCTTCCEE
T ss_pred c-CCccCHhHhcCccCCCEE
Confidence 6 5555543 3455555544
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=4.1e-12 Score=126.92 Aligned_cols=126 Identities=12% Similarity=0.157 Sum_probs=89.8
Q ss_pred cccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccc-cccchhcC
Q 043855 560 YDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEV-LPESVNKL 638 (946)
Q Consensus 560 ~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~-lp~~i~~L 638 (946)
.++++|+.|.+.++. +. . .+.+..+++|++|++++|.+..++ .++.+++|++|++++|.+.. .|..++.+
T Consensus 41 ~~l~~L~~L~l~~n~------i~-~-l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 41 AQMNSLTYITLANIN------VT-D-LTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHHHTCCEEEEESSC------CS-C-CTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred hhcCCccEEeccCCC------cc-C-hHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCC
Confidence 356667777776543 11 1 224567788888888888776654 67788888888888888874 57778888
Q ss_pred CCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccCCCCCCcccCce
Q 043855 639 YKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSF 695 (946)
Q Consensus 639 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 695 (946)
++|++|++++|......|..+.++++|++|++++|..+..+| .++.+++|+.|++.
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence 888888888884444567778888888888888886566665 46777777777543
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=1.8e-14 Score=167.62 Aligned_cols=206 Identities=14% Similarity=0.031 Sum_probs=119.3
Q ss_pred cCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCC-------------chhhchhhhcccCccCeee-cCCCCCccc
Q 043855 613 GELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCD-------------RLKKLCASLGNLINLHHLN-NSNTDSLEE 678 (946)
Q Consensus 613 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~-------------~l~~lp~~i~~L~~L~~L~-l~~~~~~~~ 678 (946)
..+++|+.|+|++|.++.+|.+|++|++|+.|++++|. ..+..|..++++++|++|+ ++.|. +..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cch
Confidence 45667777777777777777777777777777776552 2334556667777777776 44332 222
Q ss_pred cccccCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEecCCCCCCC
Q 043855 679 MPIGIGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWTCSTDDSS 758 (946)
Q Consensus 679 ~p~~i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~ 758 (946)
++. +.+..+. +..+.. ..|+ .|.+.+..- . .++. +..+++|+.|+|++|.+..
T Consensus 425 L~~----------l~l~~n~------i~~l~~-~~L~-~L~Ls~n~l-~----~lp~-~~~l~~L~~L~Ls~N~l~~--- 477 (567)
T 1dce_A 425 LRS----------KFLLENS------VLKMEY-ADVR-VLHLAHKDL-T----VLCH-LEQLLLVTHLDLSHNRLRA--- 477 (567)
T ss_dssp HHH----------HHHHHHH------HHHHHH-TTCS-EEECTTSCC-S----SCCC-GGGGTTCCEEECCSSCCCC---
T ss_pred hhh----------hhhhccc------ccccCc-cCce-EEEecCCCC-C----CCcC-ccccccCcEeecCcccccc---
Confidence 221 1000000 000000 0011 222222110 0 1122 5566777777777776553
Q ss_pred chhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCC-C-CCCCCCCCceeeeccccC
Q 043855 759 LREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSL-P-SVGQLPSLKHLVVRRMSR 836 (946)
Q Consensus 759 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l-~-~l~~l~~L~~L~L~~~~~ 836 (946)
++..+..+++|+.|+|++|.+..+| .+. .+++|+.|+|++|.+.+.. | .++.+++|+.|+|++|+
T Consensus 478 ---------lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~--~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~- 544 (567)
T 1dce_A 478 ---------LPPALAALRCLEVLQASDNALENVD-GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS- 544 (567)
T ss_dssp ---------CCGGGGGCTTCCEEECCSSCCCCCG-GGT--TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-
T ss_pred ---------cchhhhcCCCCCEEECCCCCCCCCc-ccC--CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-
Confidence 3345667788888888888888888 554 6888999999888876653 4 68888899999998864
Q ss_pred ceeeCccccCCCCCCcCCCcceeec
Q 043855 837 VKRLGSEFYGNDCPIPFLCLETLCF 861 (946)
Q Consensus 837 l~~~~~~~~~~~~~~~~~~L~~L~l 861 (946)
+..++..... ....+|+|+.|++
T Consensus 545 l~~~~~~~~~--l~~~lp~L~~L~l 567 (567)
T 1dce_A 545 LCQEEGIQER--LAEMLPSVSSILT 567 (567)
T ss_dssp GGGSSSCTTH--HHHHCTTCSEEEC
T ss_pred CCCCccHHHH--HHHHCcccCccCC
Confidence 3333322110 0123778888753
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=1.7e-11 Score=125.66 Aligned_cols=83 Identities=22% Similarity=0.260 Sum_probs=64.9
Q ss_pred eeEEEecCCCCccCCccccCCCCCcEEeccCCCcccc-ccchhcCCCCcEEecCCCCchhhchhh-hcccCccCeeecCC
Q 043855 595 LRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVL-PESVNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLNNSN 672 (946)
Q Consensus 595 Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 672 (946)
.+.++++++.+..+|..+. .+|++|+|++|.+..+ |..+.++++|++|+|++| .+..+|.. +..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence 4568888888888887664 7889999999888877 666888888999999888 56777654 57888888888888
Q ss_pred CCCcccccc
Q 043855 673 TDSLEEMPI 681 (946)
Q Consensus 673 ~~~~~~~p~ 681 (946)
|. +..+|.
T Consensus 98 N~-l~~l~~ 105 (229)
T 3e6j_A 98 NQ-LTVLPS 105 (229)
T ss_dssp SC-CCCCCT
T ss_pred Cc-CCccCh
Confidence 86 555543
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=2.2e-12 Score=122.45 Aligned_cols=124 Identities=19% Similarity=0.165 Sum_probs=87.6
Q ss_pred cccceeeccCCCCCCCccchh-HHhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccc-cccchhcCC
Q 043855 562 IVCLRTFLPVNLPNSSRGLLA-FRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEV-LPESVNKLY 639 (946)
Q Consensus 562 ~~~LrsL~~~~~~~~~~~~~~-~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~ 639 (946)
.++++.|.+.++. +. ..++..+..+++|++|++++|.++.+ ..++++++|++|++++|.+.. +|..++.++
T Consensus 16 ~~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 3556666666543 22 22333345778888888888887777 667788888888888888876 677777788
Q ss_pred CCcEEecCCCCchhhch--hhhcccCccCeeecCCCCCcccccc----ccCCCCCCcccCc
Q 043855 640 KLQTLLLEDCDRLKKLC--ASLGNLINLHHLNNSNTDSLEEMPI----GIGKLTSLQTLCS 694 (946)
Q Consensus 640 ~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~ 694 (946)
+|++|++++| .+..+| ..+..+++|++|++++|. +..+|. .++.+++|+.|++
T Consensus 89 ~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 89 NLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 8888888887 555554 667888888888888886 666665 4677777777754
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=3.6e-12 Score=123.82 Aligned_cols=128 Identities=21% Similarity=0.191 Sum_probs=96.9
Q ss_pred cccceeeccCCCCCCCccchh-HHhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccc-cccchhcCC
Q 043855 562 IVCLRTFLPVNLPNSSRGLLA-FRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEV-LPESVNKLY 639 (946)
Q Consensus 562 ~~~LrsL~~~~~~~~~~~~~~-~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~-lp~~i~~L~ 639 (946)
.++|+.|.+.++. +. ..++..+..+++|++|++++|.+..+ ..++.+++|++|+|++|.+.. +|..+.+++
T Consensus 23 ~~~L~~L~l~~n~------l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNCK------SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSCB------CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred cccCCEEECCCCC------CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 3567777776653 21 23333445788888888888888877 678888888889888888887 677777788
Q ss_pred CCcEEecCCCCchhhch--hhhcccCccCeeecCCCCCcccccc----ccCCCCCCcccCceecC
Q 043855 640 KLQTLLLEDCDRLKKLC--ASLGNLINLHHLNNSNTDSLEEMPI----GIGKLTSLQTLCSFVVG 698 (946)
Q Consensus 640 ~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~~~~ 698 (946)
+|++|++++| .+..+| ..+..+++|++|++++|. +..+|. .+..+++|+.|++..+.
T Consensus 96 ~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 96 NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 8889988888 667765 678888888888888887 667776 57788888888776554
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.28 E-value=1.1e-11 Score=125.98 Aligned_cols=93 Identities=17% Similarity=0.252 Sum_probs=70.8
Q ss_pred eEEEecCCCCccCCccccCCCCCcEEeccCCCcccccc--chhcCCCCcEEecCCCCchhhchh-hhcccCccCeeecCC
Q 043855 596 RVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPE--SVNKLYKLQTLLLEDCDRLKKLCA-SLGNLINLHHLNNSN 672 (946)
Q Consensus 596 r~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~ 672 (946)
++++++++.++.+|..+. ..+++|+|++|.++.++. .+.++++|++|+|++| .+..+|. .+.++++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC
Confidence 588999999999987664 356899999999998743 4889999999999988 5666654 688899999999998
Q ss_pred CCCccccccc-cCCCCCCccc
Q 043855 673 TDSLEEMPIG-IGKLTSLQTL 692 (946)
Q Consensus 673 ~~~~~~~p~~-i~~l~~L~~L 692 (946)
|. +..+|.. ++.+++|++|
T Consensus 91 N~-l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 91 NR-LENVQHKMFKGLESLKTL 110 (220)
T ss_dssp SC-CCCCCGGGGTTCSSCCEE
T ss_pred Cc-cCccCHhHhcCCcCCCEE
Confidence 87 5555543 4455555444
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.27 E-value=5.3e-12 Score=139.22 Aligned_cols=95 Identities=22% Similarity=0.280 Sum_probs=73.8
Q ss_pred eEEEecCCCCccCCccccCCCCCcEEeccCCCccccccc-hh-cCCCCcEEecCCCCchhhch-hhhcccCccCeeecCC
Q 043855 596 RVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPES-VN-KLYKLQTLLLEDCDRLKKLC-ASLGNLINLHHLNNSN 672 (946)
Q Consensus 596 r~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~-i~-~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 672 (946)
++++++++.++.+|..+. ..|++|+|++|.|+.+|.. +. ++++|++|+|++| .+..+| ..+.++++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 578889988888887664 4688999999999888665 54 8899999999988 666665 4588899999999999
Q ss_pred CCCccccccc-cCCCCCCcccCc
Q 043855 673 TDSLEEMPIG-IGKLTSLQTLCS 694 (946)
Q Consensus 673 ~~~~~~~p~~-i~~l~~L~~L~~ 694 (946)
|. +..+|.. +..+++|+.|++
T Consensus 98 N~-l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 98 NH-LHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp SC-CCEECTTTTTTCTTCCEEEC
T ss_pred Cc-CCcCCHHHhCCCcCCCEEEC
Confidence 87 6666653 666666666644
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=5.7e-12 Score=123.34 Aligned_cols=128 Identities=21% Similarity=0.170 Sum_probs=102.4
Q ss_pred ccccccceeeccCCCCCCCccchhHHhhhhhcccC-ceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccch-h
Q 043855 559 LYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQ-RLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESV-N 636 (946)
Q Consensus 559 ~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~-~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i-~ 636 (946)
+.++++|+.|.+.++. +. . .+.+..+. +|++|++++|.++.+ ..++++++|++|+|++|.++.+|..+ .
T Consensus 15 ~~~~~~L~~L~l~~n~------l~-~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK------IP-V-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp EECTTSCEEEECTTSC------CC-S-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred cCCcCCceEEEeeCCC------Cc-h-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhh
Confidence 4467788888887764 11 1 23455444 899999999999887 67889999999999999999888665 8
Q ss_pred cCCCCcEEecCCCCchhhchh--hhcccCccCeeecCCCCCccccccc----cCCCCCCcccCceec
Q 043855 637 KLYKLQTLLLEDCDRLKKLCA--SLGNLINLHHLNNSNTDSLEEMPIG----IGKLTSLQTLCSFVV 697 (946)
Q Consensus 637 ~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~~~~~ 697 (946)
.+++|++|++++| .+..+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|+...+
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 9999999999998 6788887 78899999999999998 7777775 788888888876544
No 128
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.26 E-value=8.1e-11 Score=122.14 Aligned_cols=199 Identities=15% Similarity=0.103 Sum_probs=120.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++||+..++.+..++.... ..+++.|+|++|+||||||+.+++.......+.. ........ ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHh
Confidence 459999999999999996542 2358899999999999999999874321111100 00000000 00000
Q ss_pred HHhcC----CCCCCcccHHHHHHHHHHH----hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhH-H
Q 043855 264 RSFVA----DPNVDNRDLILLQLQLKKQ----LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGV-A 334 (946)
Q Consensus 264 ~~l~~----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v-~ 334 (946)
..... ...........+...+... ..+++.+|||||++..+...+..+...+.....+..+|+||+.... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 00000 0000111122222222211 2356899999999776656677776665554567788888876432 1
Q ss_pred -HhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhh
Q 043855 335 -AIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLL 398 (946)
Q Consensus 335 -~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 398 (946)
........+.+.+++.++..+++...+..... ... .+..+.|++.|+|.|..+..+...+
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12233467999999999999999887653221 111 3557789999999999988776544
No 129
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.25 E-value=9e-12 Score=125.74 Aligned_cols=99 Identities=29% Similarity=0.403 Sum_probs=80.6
Q ss_pred cCceeEEEecCCCCccCCc-cccCCCCCcEEeccCCCccccccc-hhcCCCCcEEecCCCCchhhchhh-hcccCccCee
Q 043855 592 LQRLRVFSLCGYEIFELPD-SIGELRHLRYLNLSRTLIEVLPES-VNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHL 668 (946)
Q Consensus 592 ~~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 668 (946)
.++|++|++++|.+..+|. .++++.+|++|++++|.++.+|.. +..+++|++|++++| .+..+|.. +.++++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 4579999999999998875 468999999999999999988765 689999999999999 66677655 6899999999
Q ss_pred ecCCCCCccccccc-cCCCCCCccc
Q 043855 669 NNSNTDSLEEMPIG-IGKLTSLQTL 692 (946)
Q Consensus 669 ~l~~~~~~~~~p~~-i~~l~~L~~L 692 (946)
++++|. +..+|.. ++.+++|++|
T Consensus 106 ~L~~N~-l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 106 ALNTNQ-LQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred EcCCCc-CcccCHhHhccCCcCCEE
Confidence 999987 6666554 4555555555
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.23 E-value=1.7e-11 Score=125.66 Aligned_cols=127 Identities=22% Similarity=0.295 Sum_probs=89.7
Q ss_pred ccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCc-cccCCCCCcEEeccCCCccccccc-hhcCCC
Q 043855 563 VCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPD-SIGELRHLRYLNLSRTLIEVLPES-VNKLYK 640 (946)
Q Consensus 563 ~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~ 640 (946)
++|+.|.+.++. +....+..+..+++|++|+|++|.+..+|. .+.++.+|++|+|++|.++.+|.. +..+++
T Consensus 40 ~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQ------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCEEEcCCCc------cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence 567777776654 222223334577888888888888877764 457788888888888888877654 577888
Q ss_pred CcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccc-cCCCCCCcccCceec
Q 043855 641 LQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIG-IGKLTSLQTLCSFVV 697 (946)
Q Consensus 641 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~ 697 (946)
|++|+|++| .+..+|..+.++++|++|++++|. +..+|.. +..+++|+.|.+..+
T Consensus 114 L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 114 LKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred hCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 888888887 667788778888888888888876 6666643 667777777755433
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=1.1e-11 Score=117.56 Aligned_cols=104 Identities=24% Similarity=0.283 Sum_probs=91.5
Q ss_pred ccCceeEEEecCCCCc--cCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhh-chhhhcccCccCe
Q 043855 591 RLQRLRVFSLCGYEIF--ELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKK-LCASLGNLINLHH 667 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~--~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~~ 667 (946)
..++|+.|++++|.+. .+|..++.+++|++|++++|.++.+ ..++++++|++|++++| .+.. +|..+.++++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence 5678999999999998 8999899999999999999999988 78999999999999999 5555 8888888999999
Q ss_pred eecCCCCCccccc--cccCCCCCCcccCceec
Q 043855 668 LNNSNTDSLEEMP--IGIGKLTSLQTLCSFVV 697 (946)
Q Consensus 668 L~l~~~~~~~~~p--~~i~~l~~L~~L~~~~~ 697 (946)
|++++|. +..+| ..++.+++|++|++..+
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTC
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCC
Confidence 9999998 77765 67888999998866443
No 132
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.20 E-value=2.7e-11 Score=123.15 Aligned_cols=127 Identities=26% Similarity=0.323 Sum_probs=90.9
Q ss_pred ccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccC-CccccCCCCCcEEeccCCCccccccc-hhcCCC
Q 043855 563 VCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFEL-PDSIGELRHLRYLNLSRTLIEVLPES-VNKLYK 640 (946)
Q Consensus 563 ~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~ 640 (946)
+.++.|.+.++. +..-.+..+..+++|++|+|++|.+..+ |..|.++.+|++|+|++|.++.+|.. +..+++
T Consensus 32 ~~l~~L~l~~n~------i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQNT------IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp TTCCEEECCSSC------CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCEEECCCCc------CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 467777776654 1111122344778888888888888765 67788888888888888888888765 577888
Q ss_pred CcEEecCCCCchhhc-hhhhcccCccCeeecCCCCCccccccc-cCCCCCCcccCceec
Q 043855 641 LQTLLLEDCDRLKKL-CASLGNLINLHHLNNSNTDSLEEMPIG-IGKLTSLQTLCSFVV 697 (946)
Q Consensus 641 L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~ 697 (946)
|++|+|++| .+..+ |..+..+++|++|++++|. +..+|.. +..+++|+.|++..+
T Consensus 106 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 106 LQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCC
Confidence 888888888 45554 5567888888888888887 6666654 777777777765443
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=4.7e-11 Score=115.85 Aligned_cols=137 Identities=24% Similarity=0.263 Sum_probs=109.2
Q ss_pred cccceeEEEEEeccCCCCcccccccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCcc-CCccccC
Q 043855 536 FSQNLCHFSFIRGDYDGGKRFENLYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFE-LPDSIGE 614 (946)
Q Consensus 536 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~-lp~~i~~ 614 (946)
.+..++++.+..+..........+..+++|+.|.+.++. +.. . ..+..+++|++|++++|.+.. +|..+.+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~------l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------LIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC------CCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC------CCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 456677887766543211122234678999999998765 111 1 556689999999999999998 7877888
Q ss_pred CCCCcEEeccCCCccccc--cchhcCCCCcEEecCCCCchhhchh----hhcccCccCeeecCCCCCccccccc
Q 043855 615 LRHLRYLNLSRTLIEVLP--ESVNKLYKLQTLLLEDCDRLKKLCA----SLGNLINLHHLNNSNTDSLEEMPIG 682 (946)
Q Consensus 615 l~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~~~~~p~~ 682 (946)
+++|++|+|++|.++.+| ..+..+++|++|++++| .+..+|. .+..+++|++|++++|. ...+|..
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 999999999999999987 78999999999999999 7777776 78999999999999997 7777754
No 134
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.13 E-value=6.8e-10 Score=113.25 Aligned_cols=187 Identities=13% Similarity=0.050 Sum_probs=117.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++.......-...+.+..+...+...+.. .+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRH-KI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHH-HH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHH-HH
Confidence 458999999999999996542 23489999999999999999987321111111234444444333332222 11
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhH--HHhhCCCC
Q 043855 264 RSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGV--AAIMGTVP 341 (946)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v--~~~~~~~~ 341 (946)
..+..... ...+++.+|||||++......+..+...+.....+.++|+||+.... ........
T Consensus 90 ~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 90 KEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 11111100 11357899999999776555555565555444567788888876532 11222344
Q ss_pred cEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhh
Q 043855 342 AYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGG 396 (946)
Q Consensus 342 ~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 396 (946)
.+.+.+++.++..+++.+.+..... .. -.+..+.|++.++|.|..+..+..
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGV-KI---TEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC-CB---CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 7999999999999999887642211 11 135567888999999986555443
No 135
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.13 E-value=6.5e-11 Score=120.32 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=93.1
Q ss_pred cceeeccCCCCCCCccchhHHhhhh-hcccCceeEEEecCCCCccCCc-cccCCCCCcEEeccCCCccccccc-hhcCCC
Q 043855 564 CLRTFLPVNLPNSSRGLLAFRVLHQ-LLRLQRLRVFSLCGYEIFELPD-SIGELRHLRYLNLSRTLIEVLPES-VNKLYK 640 (946)
Q Consensus 564 ~LrsL~~~~~~~~~~~~~~~~~~~~-l~~~~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~ 640 (946)
.++.|.+.++. +....+.. +..+++|++|+|++|.++.++. .|+++.+|++|+|++|.++.+|.. +..+++
T Consensus 33 ~~~~L~L~~N~------l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 106 (220)
T 2v70_A 33 YTAELRLNNNE------FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106 (220)
T ss_dssp TCSEEECCSSC------CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS
T ss_pred CCCEEEcCCCc------CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC
Confidence 45667666553 11111222 3478889999999998887764 788899999999999988877654 888899
Q ss_pred CcEEecCCCCchhhc-hhhhcccCccCeeecCCCCCcccc-ccccCCCCCCcccCceec
Q 043855 641 LQTLLLEDCDRLKKL-CASLGNLINLHHLNNSNTDSLEEM-PIGIGKLTSLQTLCSFVV 697 (946)
Q Consensus 641 L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~~~~~ 697 (946)
|++|+|++| .+..+ |..+..+++|++|++++|. +..+ |..+..+++|+.|++..+
T Consensus 107 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 107 LKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCEEECCCC-cCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCc
Confidence 999999988 45554 6678888999999999887 5555 566888888888866544
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.13 E-value=4.6e-11 Score=143.55 Aligned_cols=103 Identities=26% Similarity=0.326 Sum_probs=59.2
Q ss_pred ccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeec
Q 043855 591 RLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNN 670 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 670 (946)
.++.|++|+|++|.+..+|..+.++.+|++|+|++|.|+.+|..|++|++|++|+|++| .+..+|..+++|++|++|++
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEEC
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEEC
Confidence 55555556665555555555555555566666665555555555555556666666555 34455555555555666665
Q ss_pred CCCCCccccccccCCCCCCcccCce
Q 043855 671 SNTDSLEEMPIGIGKLTSLQTLCSF 695 (946)
Q Consensus 671 ~~~~~~~~~p~~i~~l~~L~~L~~~ 695 (946)
++|. ++.+|..|+.|++|++|++.
T Consensus 301 ~~N~-l~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 301 FDNM-VTTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CSSC-CCCCCSSTTSCTTCCCEECT
T ss_pred CCCC-CCccChhhhcCCCccEEeCC
Confidence 5554 45555555555555555443
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=1e-11 Score=149.28 Aligned_cols=118 Identities=25% Similarity=0.340 Sum_probs=99.3
Q ss_pred ccccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcC
Q 043855 559 LYDIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKL 638 (946)
Q Consensus 559 ~~~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L 638 (946)
+..++.|+.|.+.++. + ..++..++++++|++|+|++|.++.+|..|++|.+|++|+|++|.|+.+|..|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~------l-~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ------I-FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp --CCCCCCEEECTTSC------C-SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred hccCCCCcEEECCCCC------C-CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 4567788888888764 2 24566777899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEecCCCCchhhchhhhcccCccCeeecCCCCCccccccccC
Q 043855 639 YKLQTLLLEDCDRLKKLCASLGNLINLHHLNNSNTDSLEEMPIGIG 684 (946)
Q Consensus 639 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 684 (946)
++|++|+|++| .+..+|..|++|++|++|++++|...+.+|..++
T Consensus 293 ~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 293 FQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp TTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 99999999998 7789999999999999999999984445554443
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.10 E-value=9.1e-11 Score=136.47 Aligned_cols=84 Identities=29% Similarity=0.316 Sum_probs=41.3
Q ss_pred hcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhc--hhhhcccCccC
Q 043855 589 LLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKL--CASLGNLINLH 666 (946)
Q Consensus 589 l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L~ 666 (946)
+..+++|++|+|++|.++.+|..|+++++|++|+|++|.++.+| .+++|++|++|+|++| .+..+ |..+++|++|+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCC
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCC
Confidence 33444555555555555555544555555555555555554444 4445555555555544 33333 44455555555
Q ss_pred eeecCCCC
Q 043855 667 HLNNSNTD 674 (946)
Q Consensus 667 ~L~l~~~~ 674 (946)
+|++++|.
T Consensus 537 ~L~L~~N~ 544 (567)
T 1dce_A 537 LLNLQGNS 544 (567)
T ss_dssp EEECTTSG
T ss_pred EEEecCCc
Confidence 55555544
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.09 E-value=8.2e-11 Score=115.05 Aligned_cols=104 Identities=27% Similarity=0.377 Sum_probs=89.1
Q ss_pred hcccCceeEEEecCCCCccCCccccCCC-CCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhh-cccCccC
Q 043855 589 LLRLQRLRVFSLCGYEIFELPDSIGELR-HLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASL-GNLINLH 666 (946)
Q Consensus 589 l~~~~~Lr~L~L~~~~~~~lp~~i~~l~-~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~ 666 (946)
+..+..|++|++++|.++.+|. +..+. +|++|+|++|.++.+ ..++.+++|++|++++| .+..+|..+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 4478899999999999999875 55555 999999999999988 68999999999999999 777888665 8999999
Q ss_pred eeecCCCCCcccccc--ccCCCCCCcccCcee
Q 043855 667 HLNNSNTDSLEEMPI--GIGKLTSLQTLCSFV 696 (946)
Q Consensus 667 ~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~ 696 (946)
+|++++|. +..+|. .++.+++|+.|.+..
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCS
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecC
Confidence 99999998 788886 677888888875543
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.06 E-value=2.5e-10 Score=113.17 Aligned_cols=103 Identities=24% Similarity=0.376 Sum_probs=84.5
Q ss_pred CceeEEEecCCCCccCCccccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhchh-hhcccCccCeeec
Q 043855 593 QRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKLCA-SLGNLINLHHLNN 670 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l 670 (946)
+.|++|++++|.++.+|..+.++.+|++|+|++|.|+.++. .|.++++|++|+|++| .+..+|. .+..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEEC
Confidence 57889999999998888888999999999999999988764 5888999999999998 5666654 5888999999999
Q ss_pred CCCCCccccccc-cCCCCCCcccCceec
Q 043855 671 SNTDSLEEMPIG-IGKLTSLQTLCSFVV 697 (946)
Q Consensus 671 ~~~~~~~~~p~~-i~~l~~L~~L~~~~~ 697 (946)
++|. +..+|.. +..+++|+.|++..+
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCC-CCeeChhhhhcCccccEEEeCCC
Confidence 9987 7777765 777888888865443
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=3.5e-10 Score=122.91 Aligned_cols=118 Identities=11% Similarity=0.165 Sum_probs=72.8
Q ss_pred cccceeeccCCCCCCCccchhHHhhhhhcc-cCceeEEEecCCCCccCCccccCCCCCcEEeccCCCcccccc-chhc--
Q 043855 562 IVCLRTFLPVNLPNSSRGLLAFRVLHQLLR-LQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPE-SVNK-- 637 (946)
Q Consensus 562 ~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~-~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~-- 637 (946)
+.+++.|.+.+. +.......+.. +++|++|||++|.+......-+.+..++++.+..+. +|. .|.+
T Consensus 24 ~~~l~~L~l~g~-------i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~ 93 (329)
T 3sb4_A 24 ANSITHLTLTGK-------LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF---VPAYAFSNVV 93 (329)
T ss_dssp HHHCSEEEEEEE-------ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE---ECTTTTEEEE
T ss_pred hCceeEEEEecc-------ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccc---cCHHHhcccc
Confidence 445666666542 11222334443 788999999999887221112233335666666653 333 4666
Q ss_pred ------CCCCcEEecCCCCchhhchh-hhcccCccCeeecCCCCCccccccc-cCCCCCCccc
Q 043855 638 ------LYKLQTLLLEDCDRLKKLCA-SLGNLINLHHLNNSNTDSLEEMPIG-IGKLTSLQTL 692 (946)
Q Consensus 638 ------L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L 692 (946)
|++|+.|+|.+ .++.++. .+.+|++|+.|++++|. +..++.. +..+.++..+
T Consensus 94 ~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFI 153 (329)
T ss_dssp TTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEE
T ss_pred cccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEe
Confidence 89999999987 4666665 48889999999999887 5566554 5555555544
No 142
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.04 E-value=9.7e-10 Score=119.23 Aligned_cols=268 Identities=18% Similarity=0.117 Sum_probs=148.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|++..++.+..++..... .......+.|+|++|+|||++|+.+++. ... ...++..+......++
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l----- 80 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDL----- 80 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHH-----
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHH-----
Confidence 4699999999998888753210 0123356889999999999999999873 222 2234444332222111
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCC------------------CCCcEEE
Q 043855 264 RSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAG------------------APGSKII 325 (946)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~------------------~~gs~ii 325 (946)
...+...+ .++.+|+|||+..........+...+... .++.++|
T Consensus 81 -----------------~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 81 -----------------AAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp -----------------HHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred -----------------HHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 11111111 34568899999776543433333222110 0235677
Q ss_pred EEcCChh-HHHh-hCCC-CcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhhhccC-
Q 043855 326 VTTRNQG-VAAI-MGTV-PAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGLLRGH- 401 (946)
Q Consensus 326 vTtR~~~-v~~~-~~~~-~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~l~~~- 401 (946)
.||.... +... .... ..+.+.+++.++..+++...+..... ... .+..+.+++.++|.|-.+..+...+...
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 6666432 1111 1122 47899999999999999887643221 111 3567789999999998877665543211
Q ss_pred -------CChHHHHHHHhhhcccCcccccccchhhhhhccCCChhHHHHhhhhc-cCCCC----------CcccHHHH--
Q 043855 402 -------HDKCDWEGVLRAKIWELPEERASFIPDLAISYRHLPPTLKQCFAYCS-LFPKG----------YEFEEKEI-- 461 (946)
Q Consensus 402 -------~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cf~~~s-~fp~~----------~~i~~~~l-- 461 (946)
-+.+....+... +...+..++...+..+..+. .|..+ ..+++..+
T Consensus 219 ~~~~~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~ 283 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEE 283 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHH
Confidence 123333333322 11223344444444444333 22111 01233332
Q ss_pred --HHHHHHhCCccccCCCCcHHHHHHHHHH-HHHhCcCCcc
Q 043855 462 --ILLWSAVGFLDHVQSGNASEDLGRDIFR-ELCARSFFQE 499 (946)
Q Consensus 462 --i~~Wiaeg~i~~~~~~~~~e~~~~~~l~-~L~~~~l~~~ 499 (946)
-.+-+..|+|.....+...++.|.+||+ ++.+|+|||+
T Consensus 284 ~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 284 VHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 2245678999776677788899999998 9999999985
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.99 E-value=6.3e-10 Score=110.34 Aligned_cols=103 Identities=23% Similarity=0.272 Sum_probs=75.2
Q ss_pred ceeEEEecCCCCccCCcc--ccCCCCCcEEeccCCCcccc-ccchhcCCCCcEEecCCCCchhhchh-hhcccCccCeee
Q 043855 594 RLRVFSLCGYEIFELPDS--IGELRHLRYLNLSRTLIEVL-PESVNKLYKLQTLLLEDCDRLKKLCA-SLGNLINLHHLN 669 (946)
Q Consensus 594 ~Lr~L~L~~~~~~~lp~~--i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 669 (946)
.|++|++++|.+..++.. ++++.+|++|+|++|.++.+ |..|.++++|++|+|++| .+..+|. .+.++++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 678888888888777653 77888888888888888866 667888888888888887 4555544 477788888888
Q ss_pred cCCCCCccccccccCCCCCCcccCceec
Q 043855 670 NSNTDSLEEMPIGIGKLTSLQTLCSFVV 697 (946)
Q Consensus 670 l~~~~~~~~~p~~i~~l~~L~~L~~~~~ 697 (946)
+++|......|..++.+++|++|++..+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 8888733334556777777777765443
No 144
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.98 E-value=5.9e-10 Score=122.76 Aligned_cols=102 Identities=25% Similarity=0.369 Sum_probs=55.5
Q ss_pred ccCceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhc-hhhhcccCccCe
Q 043855 591 RLQRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKL-CASLGNLINLHH 667 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~ 667 (946)
.+++|++|+|++|.+..++ ..|.++.+|++|+|++|.++.+|. .|..+++|++|+|++| .+..+ |..+.++++|++
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~ 140 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQK 140 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCE
Confidence 5556666666666665554 345566666666666666655543 3555666666666665 33333 444556666666
Q ss_pred eecCCCCCcccccccc----CCCCCCcccCc
Q 043855 668 LNNSNTDSLEEMPIGI----GKLTSLQTLCS 694 (946)
Q Consensus 668 L~l~~~~~~~~~p~~i----~~l~~L~~L~~ 694 (946)
|++++|. +..+|..+ +.+++|+.|++
T Consensus 141 L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 141 LYLSQNQ-ISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp EECCSSC-CCSCCGGGTC----CTTCCEEEC
T ss_pred EECCCCc-CCeeCHHHhcCcccCCcCCEEEC
Confidence 6666655 55555442 34455555443
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.97 E-value=9.1e-10 Score=107.06 Aligned_cols=95 Identities=22% Similarity=0.361 Sum_probs=47.1
Q ss_pred eEEEecCCCCccCCccccCCCCCcEEeccCCCcccc-ccchhcCCCCcEEecCCCCchhhchhh-hcccCccCeeecCCC
Q 043855 596 RVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVL-PESVNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLNNSNT 673 (946)
Q Consensus 596 r~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 673 (946)
+.++++++.+..+|..+. .+|++|+|++|.+..+ |..|.++++|++|+|++| .+..+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 345555555555554443 4555555555555544 334555555555555555 44444443 345555555555555
Q ss_pred CCccccccc-cCCCCCCcccCc
Q 043855 674 DSLEEMPIG-IGKLTSLQTLCS 694 (946)
Q Consensus 674 ~~~~~~p~~-i~~l~~L~~L~~ 694 (946)
. +..+|.. ++.+++|+.|++
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEEC
T ss_pred c-cceeCHHHhccccCCCEEEe
Confidence 4 4444443 444555555543
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=1.1e-09 Score=106.22 Aligned_cols=99 Identities=24% Similarity=0.339 Sum_probs=65.5
Q ss_pred eeEEEecCCCCccCCccccCCCCCcEEeccCCCcccc-ccchhcCCCCcEEecCCCCchhhchhh-hcccCccCeeecCC
Q 043855 595 LRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVL-PESVNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLNNSN 672 (946)
Q Consensus 595 Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 672 (946)
.++|+++++.++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+|.. +.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 4567777777777776553 6777777777777766 445677777777777776 55566554 46777777777777
Q ss_pred CCCccccccc-cCCCCCCcccCceec
Q 043855 673 TDSLEEMPIG-IGKLTSLQTLCSFVV 697 (946)
Q Consensus 673 ~~~~~~~p~~-i~~l~~L~~L~~~~~ 697 (946)
|. +..+|.. ++.+++|+.|++..+
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence 76 5566654 666777776655443
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.95 E-value=1.8e-09 Score=107.01 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=98.9
Q ss_pred eEEEecCCCCccCCccccCCCCCcEEeccCCCccccccc--hhcCCCCcEEecCCCCchhhc-hhhhcccCccCeeecCC
Q 043855 596 RVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPES--VNKLYKLQTLLLEDCDRLKKL-CASLGNLINLHHLNNSN 672 (946)
Q Consensus 596 r~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~ 672 (946)
++++++++.++.+|..+.. +|++|++++|.+..+|.. ++++++|++|+|++| .+..+ |..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 7899999999999987755 999999999999998764 999999999999999 55555 77899999999999999
Q ss_pred CCCccccccc-cCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEec
Q 043855 673 TDSLEEMPIG-IGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRWT 751 (946)
Q Consensus 673 ~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 751 (946)
|. +..++.. ++.+++|++|++..+... ...+..+..+++|+.|+|++|
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~l~------------------------------~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 88 NK-IKEISNKMFLGLHQLKTLNLYDNQIS------------------------------CVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CC-CCEECSSSSTTCTTCCEEECCSSCCC------------------------------EECTTSSTTCTTCCEEECTTC
T ss_pred Cc-CCccCHHHhcCCCCCCEEECCCCcCC------------------------------eeCHHHhhcCCCCCEEEeCCC
Confidence 98 6666654 788888888865433210 111233556678888888877
Q ss_pred CCCC
Q 043855 752 CSTD 755 (946)
Q Consensus 752 ~~~~ 755 (946)
....
T Consensus 137 ~l~c 140 (192)
T 1w8a_A 137 PFNC 140 (192)
T ss_dssp CBCC
T ss_pred CccC
Confidence 6553
No 148
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.94 E-value=3e-09 Score=105.38 Aligned_cols=97 Identities=24% Similarity=0.287 Sum_probs=84.3
Q ss_pred eEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhch-hhhcccCccCeeecCCCC
Q 043855 596 RVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLC-ASLGNLINLHHLNNSNTD 674 (946)
Q Consensus 596 r~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 674 (946)
++++++++.++.+|..+. .+|++|+|++|.++.+|..+.++++|++|+|++| .+..++ ..+.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 689999999999998764 6999999999999999999999999999999999 666665 469999999999999998
Q ss_pred Ccccccc-ccCCCCCCcccCcee
Q 043855 675 SLEEMPI-GIGKLTSLQTLCSFV 696 (946)
Q Consensus 675 ~~~~~p~-~i~~l~~L~~L~~~~ 696 (946)
+..+|. .++.+++|++|++..
T Consensus 90 -l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 90 -LRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp -CCBCCTTTTTTCTTCCEEECCS
T ss_pred -cCEeCHHHhCCCCCCCEEECCC
Confidence 777765 488888888886543
No 149
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=5e-09 Score=113.53 Aligned_cols=186 Identities=16% Similarity=0.173 Sum_probs=116.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccC-CceEEEEeCCCCCHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF-DLKAWTCVSDDFDVVRLIKVI 262 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i 262 (946)
.+++|++..++.+.+++... ..+.+.|+|++|+||||+|+.+++... ...+ ...+++..+....... ++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 45899999999999998653 223389999999999999999997421 1111 1234444443323222 2222
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHh-CCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhH--HHhhCC
Q 043855 263 LRSFVADPNVDNRDLILLQLQLKKQL-SGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGV--AAIMGT 339 (946)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v--~~~~~~ 339 (946)
+..+.... ..+ .+++.++|+||++......+..+...+.....++++|+||+...- ......
T Consensus 93 ~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 93 IKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 22221000 011 456899999999876655666665555444466788888866431 122234
Q ss_pred CCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhH-HHHHhh
Q 043855 340 VPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLA-AKTLGG 396 (946)
Q Consensus 340 ~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLa-i~~~~~ 396 (946)
...+.+.+++.++..+++...+...+. .. -.+..+.|++.++|.|.. +..+..
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDV-KY---TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTC-CB---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 458999999999999999876532111 11 135567899999999954 444433
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=1e-11 Score=124.22 Aligned_cols=103 Identities=23% Similarity=0.315 Sum_probs=81.0
Q ss_pred hhcccCceeEEEecCCCCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCe
Q 043855 588 QLLRLQRLRVFSLCGYEIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHH 667 (946)
Q Consensus 588 ~l~~~~~Lr~L~L~~~~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 667 (946)
.+..+++|++|++++|.+..+| .++++++|++|++++|.++.+|..+..+++|++|++++| .+..+| .+.++++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 5567888888888888888887 788888888888888888888888888888888888888 666776 5788888888
Q ss_pred eecCCCCCcccccc--ccCCCCCCcccCc
Q 043855 668 LNNSNTDSLEEMPI--GIGKLTSLQTLCS 694 (946)
Q Consensus 668 L~l~~~~~~~~~p~--~i~~l~~L~~L~~ 694 (946)
|++++|. +..+|. .++.+++|++|++
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEEEE
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEEEe
Confidence 8888886 665553 4667777777654
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.89 E-value=2.2e-11 Score=121.71 Aligned_cols=99 Identities=24% Similarity=0.250 Sum_probs=82.2
Q ss_pred ceeEEEecCC--CCccCCccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecC
Q 043855 594 RLRVFSLCGY--EIFELPDSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNS 671 (946)
Q Consensus 594 ~Lr~L~L~~~--~~~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 671 (946)
.|+.+.+.++ .++.+|..++++++|++|+|++|.++.+| .+.++++|++|++++| .+..+|..+..+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECc
Confidence 3555555554 56667778999999999999999999998 9999999999999999 778899888889999999999
Q ss_pred CCCCccccccccCCCCCCcccCcee
Q 043855 672 NTDSLEEMPIGIGKLTSLQTLCSFV 696 (946)
Q Consensus 672 ~~~~~~~~p~~i~~l~~L~~L~~~~ 696 (946)
+|. +..+| .++.+++|+.|++..
T Consensus 102 ~N~-l~~l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 102 YNQ-IASLS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp EEE-CCCHH-HHHHHHHSSEEEESE
T ss_pred CCc-CCcCC-ccccCCCCCEEECCC
Confidence 997 77776 577777777775543
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.88 E-value=2.2e-09 Score=104.28 Aligned_cols=90 Identities=24% Similarity=0.287 Sum_probs=79.0
Q ss_pred CceeEEEecCCCCccC-CccccCCCCCcEEeccCCCccccccc-hhcCCCCcEEecCCCCchhhchhh-hcccCccCeee
Q 043855 593 QRLRVFSLCGYEIFEL-PDSIGELRHLRYLNLSRTLIEVLPES-VNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLN 669 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 669 (946)
+.|++|+|++|.+..+ |..|+++.+|++|+|++|.++.+|.. +.++++|++|+|++| .+..+|.. +.++++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEEE
Confidence 7899999999999987 56899999999999999999999876 589999999999999 77888876 89999999999
Q ss_pred cCCCCCccccccccC
Q 043855 670 NSNTDSLEEMPIGIG 684 (946)
Q Consensus 670 l~~~~~~~~~p~~i~ 684 (946)
+++|. +...+..+.
T Consensus 112 L~~N~-~~c~~~~~~ 125 (174)
T 2r9u_A 112 LYNNP-WDCECRDIM 125 (174)
T ss_dssp CCSSC-BCTTBGGGH
T ss_pred eCCCC-cccccccHH
Confidence 99998 655554443
No 153
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.87 E-value=4.4e-09 Score=102.74 Aligned_cols=103 Identities=29% Similarity=0.432 Sum_probs=77.0
Q ss_pred CceeEEEecCCCCccCCc-cccCCCCCcEEeccCCCccccccc-hhcCCCCcEEecCCCCchhhchhh-hcccCccCeee
Q 043855 593 QRLRVFSLCGYEIFELPD-SIGELRHLRYLNLSRTLIEVLPES-VNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLN 669 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~lp~-~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 669 (946)
+.|++|++++|.+..+|. .++++.+|++|++++|.++.+|.. +..+++|++|++++| .+..+|.. +.++++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEE
Confidence 578888888888877764 457888888888888888877654 578888888888887 56666554 57788888888
Q ss_pred cCCCCCccccccc-cCCCCCCcccCceec
Q 043855 670 NSNTDSLEEMPIG-IGKLTSLQTLCSFVV 697 (946)
Q Consensus 670 l~~~~~~~~~p~~-i~~l~~L~~L~~~~~ 697 (946)
+++|. +..+|.. +..+++|++|++..+
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence 88886 6677765 466777777765443
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=1.3e-09 Score=118.41 Aligned_cols=283 Identities=13% Similarity=0.088 Sum_probs=141.9
Q ss_pred ccCceeEEEecCCCC-ccCCccccC-CCCCcEEeccCCCccccccchhcCCCCcEEecCCCCchhhchh-hhcc------
Q 043855 591 RLQRLRVFSLCGYEI-FELPDSIGE-LRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLEDCDRLKKLCA-SLGN------ 661 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~-~~lp~~i~~-l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~------ 661 (946)
.+..|+.|.++|+-- ..+ ..+.. +.+|++|||++|.|......-+.++.+..+.+..+ .+|. .+.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVT 97 (329)
T ss_dssp HHHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEE
T ss_pred hhCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccc
Confidence 456788889887511 111 12333 88999999999998832222223334556666555 3443 3667
Q ss_pred --cCccCeeecCCCCCccccccc-cCCCCCCcccCceecCCC--CCCChhccccccccCCeeEEecCCCCCCcccccccc
Q 043855 662 --LINLHHLNNSNTDSLEEMPIG-IGKLTSLQTLCSFVVGKD--SGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQ 736 (946)
Q Consensus 662 --L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~--~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~ 736 (946)
|++|+.|++.. . +..++.+ +..+++|+.|.+...... ....+....++..+. .................
T Consensus 98 ~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~----~~~~~~~~~~~~i~~~~ 171 (329)
T 3sb4_A 98 KGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIP----LGSSDAYRFKNRWEHFA 171 (329)
T ss_dssp EECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC----TTCTHHHHTSTTTTTSC
T ss_pred cccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEec----Ccchhhhhccccccccc
Confidence 99999999998 4 7788765 888999999876543221 112222222222111 00000000000000111
Q ss_pred CCcccccC-ceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCC
Q 043855 737 LDGKKNLK-VLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCT 815 (946)
Q Consensus 737 l~~~~~L~-~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 815 (946)
+.++..|+ .+.+.. ... ........-..+.++..+.+.++-.......+. ..+++|+.|+|.+|.+ .
T Consensus 172 f~~~~~L~~~i~~~~--~~~--------l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~-~~~~~L~~l~L~~n~i-~ 239 (329)
T 3sb4_A 172 FIEGEPLETTIQVGA--MGK--------LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIR-DYMPNLVSLDISKTNA-T 239 (329)
T ss_dssp EEESCCCEEEEEECT--TCC--------HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHH-HHCTTCCEEECTTBCC-C
T ss_pred cccccccceeEEecC--CCc--------HHHHHhhcccCccccceEEEeeeecHHHHHHHH-HhcCCCeEEECCCCCc-c
Confidence 22333443 222221 110 011122222234566666666542111000010 0256777777777663 3
Q ss_pred CCC--CCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcc-eeeccCCcccccccccCCCCCCCCCCcccEeeecC
Q 043855 816 SLP--SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLE-TLCFEDMREWEDWIPCGSSQGIELFPNLREFRILR 892 (946)
Q Consensus 816 ~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~ 892 (946)
.+| .+..+++|+.|+|.++ ++.++...+.. +++|+ .+.+.+ ++..+. ......+++|+.|++.+
T Consensus 240 ~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~-----~~~L~~~l~l~~--~l~~I~----~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 240 TIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSN-----CGRLAGTLELPA--SVTAIE----FGAFMGCDNLRYVLATG 306 (329)
T ss_dssp EECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-----CTTCCEEEEECT--TCCEEC----TTTTTTCTTEEEEEECS
T ss_pred eecHhhhhCCCCCCEEECCcc--cceehHHHhhC-----ChhccEEEEEcc--cceEEc----hhhhhCCccCCEEEeCC
Confidence 344 4677777777777763 66666544332 66676 777765 333332 11145667777777766
Q ss_pred CcCccccCCC----CCCCCCEEE
Q 043855 893 CPKLQGTLPE----RLPELKMFV 911 (946)
Q Consensus 893 c~~L~~~lp~----~l~~L~~L~ 911 (946)
+ +++ .++. ++++|+.|.
T Consensus 307 n-~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 307 D-KIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp S-CCC-EECTTTTCTTCCCCEEE
T ss_pred C-ccC-ccchhhhcCCcchhhhc
Confidence 5 555 4442 344555443
No 155
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.82 E-value=6.3e-09 Score=101.61 Aligned_cols=106 Identities=24% Similarity=0.304 Sum_probs=87.7
Q ss_pred cccceeeccCCCCCCCccchhHHhhhh-hcccCceeEEEecCCCCccCCcc-ccCCCCCcEEeccCCCccccccc-hhcC
Q 043855 562 IVCLRTFLPVNLPNSSRGLLAFRVLHQ-LLRLQRLRVFSLCGYEIFELPDS-IGELRHLRYLNLSRTLIEVLPES-VNKL 638 (946)
Q Consensus 562 ~~~LrsL~~~~~~~~~~~~~~~~~~~~-l~~~~~Lr~L~L~~~~~~~lp~~-i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L 638 (946)
.++|+.|.+.++. +. .+++. +..+++|++|++++|.++.+|.. ++++.+|++|+|++|.++.+|.. +.++
T Consensus 27 ~~~l~~L~l~~n~------l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESNK------LQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99 (177)
T ss_dssp CTTCSEEECCSSC------CC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCcEEEeCCCc------cc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCC
Confidence 3578888887764 21 23333 34889999999999999988754 68999999999999999988765 6899
Q ss_pred CCCcEEecCCCCchhhchhh-hcccCccCeeecCCCCC
Q 043855 639 YKLQTLLLEDCDRLKKLCAS-LGNLINLHHLNNSNTDS 675 (946)
Q Consensus 639 ~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 675 (946)
++|++|++++| .+..+|.. +..+++|++|++++|..
T Consensus 100 ~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 100 TQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 99999999999 67788776 57899999999999973
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.77 E-value=1.1e-08 Score=98.86 Aligned_cols=81 Identities=31% Similarity=0.432 Sum_probs=73.9
Q ss_pred CceeEEEecCCCCccC-CccccCCCCCcEEeccCCCccccccc-hhcCCCCcEEecCCCCchhhchhh-hcccCccCeee
Q 043855 593 QRLRVFSLCGYEIFEL-PDSIGELRHLRYLNLSRTLIEVLPES-VNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLN 669 (946)
Q Consensus 593 ~~Lr~L~L~~~~~~~l-p~~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 669 (946)
+.|++|+|++|.++.+ |..|+++.+|++|+|++|.++.+|.. +.++++|++|+|++| .+..+|.. +.++++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEE
Confidence 7899999999999988 56799999999999999999999776 689999999999999 77778764 89999999999
Q ss_pred cCCCC
Q 043855 670 NSNTD 674 (946)
Q Consensus 670 l~~~~ 674 (946)
+++|.
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 99997
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=3.8e-08 Score=106.77 Aligned_cols=187 Identities=15% Similarity=0.110 Sum_probs=114.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccC-CceEEEEeCCCCCHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF-DLKAWTCVSDDFDVVRLIKVI 262 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i 262 (946)
.+++|++..++.+.+++... ..+.+.|+|++|+||||+|+.+++... ...+ ...+.+..+...... .+++.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGIN-VIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHH-TTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchH-HHHHH
Confidence 35899999999999998654 233489999999999999999997421 1111 123333333211111 11111
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhH-H-HhhCCC
Q 043855 263 LRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGV-A-AIMGTV 340 (946)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v-~-~~~~~~ 340 (946)
+..+.... ....+++.++|+||++......+..+...+.....++++|+||....- . ......
T Consensus 97 ~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 97 VKEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 11110000 011256889999999877655666666555544567788888876431 1 111123
Q ss_pred CcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhhh
Q 043855 341 PAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGGL 397 (946)
Q Consensus 341 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~~ 397 (946)
..+.+.+++.++..+++...+..... . --.+..+.|++.++|.|-.+..+...
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGL-E---LTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC-E---ECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 47899999999999999877643221 1 12356778899999999876555443
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.72 E-value=8.4e-08 Score=101.18 Aligned_cols=209 Identities=11% Similarity=-0.001 Sum_probs=126.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccc------cCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRD------HFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------~F~~~~wv~~~~~~~~~~ 257 (946)
..+.||++|.++|...|...- ..+....+.|+|++|+|||++|+.|++...... .| ..+.|++....+...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HH
T ss_pred cccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHH
Confidence 348899999999998886532 124567889999999999999999998532111 12 356777778788899
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHH--hCCceEEEEEcCCCCCChhhHhhhhccCCC-CCCCc--EEEEEcCChh
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQ--LSGKKFLFVLDDVWNESYNDWVELSHPFEA-GAPGS--KIIVTTRNQG 332 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~-~~~gs--~iivTtR~~~ 332 (946)
++..|++++.+...........+...+... -.++++++|||+++... +-+.+...+.. ....+ .||.++...+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 999999999765322223344444444432 24578999999996643 11122111110 01222 3333443321
Q ss_pred H---------HHhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCC-----------------------------------C
Q 043855 333 V---------AAIMGTVPAYQLKKLSDHDCLALFARHSLGTRDF-----------------------------------S 368 (946)
Q Consensus 333 v---------~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~-----------------------------------~ 368 (946)
. ...+ ....+.+.+++.+|-.+++.+++-..... -
T Consensus 175 ~~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (318)
T 3te6_A 175 TIREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKI 253 (318)
T ss_dssp CCHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEEC
T ss_pred cchhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc
Confidence 1 1122 12468999999999999998775321100 1
Q ss_pred CchhHHHHHHHHHHhcCCChhHHHHHhhhh
Q 043855 369 SHKSLEKIGREIVTKCDGLPLAAKTLGGLL 398 (946)
Q Consensus 369 ~~~~l~~~~~~i~~~~~GlPLai~~~~~~l 398 (946)
.+..++-++++++...|-.=.|+.++-...
T Consensus 254 ~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 254 NNKITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp CHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 233455666666666777777777665443
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.68 E-value=1.8e-07 Score=103.49 Aligned_cols=197 Identities=16% Similarity=0.149 Sum_probs=114.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|++..++.+.+++.... ..+.+.|+|++|+||||+|+.+++.......+. ...+........+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHh
Confidence 359999999999999986542 235788999999999999999987422111110 00000000001111
Q ss_pred HH-------hcCCCCCCcccHHHHHHHHHHH-hCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChh-H-
Q 043855 264 RS-------FVADPNVDNRDLILLQLQLKKQ-LSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQG-V- 333 (946)
Q Consensus 264 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~-v- 333 (946)
.. +.........+...+...+... ..+++.++|+||++..+...+..+...+.....+..+|++|.... +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00 0000000112222222222111 135678999999977665566666555544445667777776442 1
Q ss_pred HHhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhh
Q 043855 334 AAIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGG 396 (946)
Q Consensus 334 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 396 (946)
.........+++.+++.++..+++.+.+...+. .. -.+..+.|++.++|.|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~---~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AH---EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CB---CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 122234467999999999999999876532111 11 134567899999999988766543
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=3.5e-08 Score=108.02 Aligned_cols=93 Identities=19% Similarity=0.146 Sum_probs=46.6
Q ss_pred EecCC-CCccCCccccCCCCCcEEeccC-CCccccc-cchhcCCCCcEEecCCCCchhhchh-hhcccCccCeeecCCCC
Q 043855 599 SLCGY-EIFELPDSIGELRHLRYLNLSR-TLIEVLP-ESVNKLYKLQTLLLEDCDRLKKLCA-SLGNLINLHHLNNSNTD 674 (946)
Q Consensus 599 ~L~~~-~~~~lp~~i~~l~~Lr~L~Ls~-~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 674 (946)
+++++ .++.+|. |+.+.+|++|+|++ |.+..+| ..|++|++|++|+|++| .+..+|. .|.+|++|++|+|++|.
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence 55554 5555555 55555555555553 5555554 33555555555555555 3333332 34555555555555554
Q ss_pred CccccccccCCCCCCcccCc
Q 043855 675 SLEEMPIGIGKLTSLQTLCS 694 (946)
Q Consensus 675 ~~~~~p~~i~~l~~L~~L~~ 694 (946)
+..+|..+....+|+.|.+
T Consensus 92 -l~~~~~~~~~~~~L~~l~l 110 (347)
T 2ifg_A 92 -LESLSWKTVQGLSLQELVL 110 (347)
T ss_dssp -CSCCCSTTTCSCCCCEEEC
T ss_pred -cceeCHHHcccCCceEEEe
Confidence 4455544322222554443
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.60 E-value=3.2e-07 Score=98.91 Aligned_cols=182 Identities=13% Similarity=0.074 Sum_probs=112.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccC-CceEEEEeCCCCCHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF-DLKAWTCVSDDFDVVRLIKVI 262 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i 262 (946)
.+++|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++... ...+ ...+.++.+.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~----- 84 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDV----- 84 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTT-----
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHH-----
Confidence 35899999999998887543 223489999999999999999987311 1111 1123344433211100
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHH--h-CCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChh-H-HHhh
Q 043855 263 LRSFVADPNVDNRDLILLQLQLKKQ--L-SGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQG-V-AAIM 337 (946)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~-v-~~~~ 337 (946)
.......+... + .+++.++|+|+++.........+...+.....++++|+||.... + ....
T Consensus 85 --------------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 85 --------------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp --------------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred --------------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 00111111101 1 25688999999977665566667666655556778888876643 1 1122
Q ss_pred CCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 338 GTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 338 ~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
.....+.+.+++.++..+++...+...+- .. -.+..+.|++.++|.+-.+....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i---~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGV-KI---TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCC-CB---CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 33457999999999999999877643221 11 13556788899999987655443
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.48 E-value=6.6e-06 Score=91.11 Aligned_cols=120 Identities=9% Similarity=0.143 Sum_probs=65.1
Q ss_pred CCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCC----CCCC--CCCCCCCCceeeeccccCceeeCccccCCCC
Q 043855 776 KNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMC----TSLP--SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDC 849 (946)
Q Consensus 776 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~----~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 849 (946)
.+|+.+.|. +.+..++.... ..+++|+.+.+.++... ..++ .+..|++|+.+.|.+ .++.++...+.
T Consensus 248 ~~L~~i~lp-~~i~~I~~~aF-~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~--- 320 (401)
T 4fdw_A 248 SGITTVKLP-NGVTNIASRAF-YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG--- 320 (401)
T ss_dssp CCCSEEEEE-TTCCEECTTTT-TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT---
T ss_pred CCccEEEeC-CCccEEChhHh-hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc---
Confidence 356666663 23344433222 15677777777665542 1233 467778888888763 46666654433
Q ss_pred CCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCCC----CC-CCCCEEEEc
Q 043855 850 PIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLPE----RL-PELKMFVIQ 913 (946)
Q Consensus 850 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~----~l-~~L~~L~i~ 913 (946)
.+++|+.+.|.+ ++..+. ......+ +|+.|.+.++ .+. .++. .+ .+++.|.+-
T Consensus 321 --~c~~L~~l~lp~--~l~~I~----~~aF~~~-~L~~l~l~~n-~~~-~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 321 --GNRKVTQLTIPA--NVTQIN----FSAFNNT-GIKEVKVEGT-TPP-QVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp --TCCSCCEEEECT--TCCEEC----TTSSSSS-CCCEEEECCS-SCC-BCCCSSCCCSCTTCCEEEEC
T ss_pred --CCCCccEEEECc--cccEEc----HHhCCCC-CCCEEEEcCC-CCc-ccccccccCCCCCccEEEeC
Confidence 267777777753 233222 1113455 7888888776 343 3331 23 356666663
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.45 E-value=3.3e-06 Score=93.54 Aligned_cols=210 Identities=12% Similarity=0.080 Sum_probs=113.4
Q ss_pred ceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCccccc-cchhcCCCCcEEecCCCCchhhchhhhcccCccCeeecC
Q 043855 594 RLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVLP-ESVNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHLNNS 671 (946)
Q Consensus 594 ~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 671 (946)
+|+.+.+..+ ++.++ .+|.++ +|+.+.+.. .++.++ ..|.+|++|+.+++.+| .+..+|...-.+.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeC
Confidence 5777777654 55554 345553 577777775 566554 45777788888888776 666776654446777777776
Q ss_pred CCCCccccccc-cCCCCCCcccCceecCCCCCCChhccccccccCCeeEEecCCCCCCccccccccCCcccccCceEEEe
Q 043855 672 NTDSLEEMPIG-IGKLTSLQTLCSFVVGKDSGSGLRELKLLKHLHGTLNISKLENVKCIVDAEEAQLDGKKNLKVLLLRW 750 (946)
Q Consensus 672 ~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 750 (946)
.+ +..++.. +..+++|+.+.+... ++.+ ....+.+ .+|+.+.|..
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~l~~~-------------l~~I------------------~~~aF~~-~~L~~i~lp~ 257 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIEIPEN-------------VSTI------------------GQEAFRE-SGITTVKLPN 257 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEECCTT-------------CCEE------------------CTTTTTT-CCCSEEEEET
T ss_pred Cc--hheehhhHhhCCCCCCEEecCCC-------------ccCc------------------ccccccc-CCccEEEeCC
Confidence 43 5555543 556666666643210 0000 0011222 3455555532
Q ss_pred cCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCC-----CCCcCcCCCCCCCccEEEEecCCCCCCCC--CCCCC
Q 043855 751 TCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGT-----EFPTWLGDFSFSNLVTLKFEDCGMCTSLP--SVGQL 823 (946)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l 823 (946)
+ ... -....+..|++|+.+.+.++... .++.... ..+++|+.+.|.++ ...++ .+..|
T Consensus 258 ~-i~~-----------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF-~~c~~L~~l~l~~~--i~~I~~~aF~~c 322 (401)
T 4fdw_A 258 G-VTN-----------IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL-EGCPKLARFEIPES--IRILGQGLLGGN 322 (401)
T ss_dssp T-CCE-----------ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT-TTCTTCCEECCCTT--CCEECTTTTTTC
T ss_pred C-ccE-----------EChhHhhCCCCCCEEEeCCccccCCcccEECHHHh-hCCccCCeEEeCCc--eEEEhhhhhcCC
Confidence 1 111 01223455666666666655433 2332222 15667777777632 33333 46667
Q ss_pred CCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCC
Q 043855 824 PSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDM 864 (946)
Q Consensus 824 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 864 (946)
++|+.+.|.. .++.++...+. .+ +|+.+.+.+.
T Consensus 323 ~~L~~l~lp~--~l~~I~~~aF~-----~~-~L~~l~l~~n 355 (401)
T 4fdw_A 323 RKVTQLTIPA--NVTQINFSAFN-----NT-GIKEVKVEGT 355 (401)
T ss_dssp CSCCEEEECT--TCCEECTTSSS-----SS-CCCEEEECCS
T ss_pred CCccEEEECc--cccEEcHHhCC-----CC-CCCEEEEcCC
Confidence 7777777753 35555544333 25 6777777653
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.44 E-value=2.1e-07 Score=101.72 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=75.8
Q ss_pred hhhhhcccCceeEEEecC-CCCccCC-ccccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhchhhhcc
Q 043855 585 VLHQLLRLQRLRVFSLCG-YEIFELP-DSIGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKLCASLGN 661 (946)
Q Consensus 585 ~~~~l~~~~~Lr~L~L~~-~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 661 (946)
+|. +..+++|++|+|++ |.+..+| ..|++|.+|++|+|++|.++.+|. .|.+|++|++|+|++| .+..+|..+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcc
Confidence 455 77889999999996 9999887 579999999999999999998755 6899999999999999 78888876554
Q ss_pred cCccCeeecCCCC
Q 043855 662 LINLHHLNNSNTD 674 (946)
Q Consensus 662 L~~L~~L~l~~~~ 674 (946)
..+|++|++.+|.
T Consensus 102 ~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 102 GLSLQELVLSGNP 114 (347)
T ss_dssp SCCCCEEECCSSC
T ss_pred cCCceEEEeeCCC
Confidence 4459999999987
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.38 E-value=8e-08 Score=105.51 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=15.5
Q ss_pred CCCcEEeccCCCccc--cccchhcCCCCcEEecCCC
Q 043855 616 RHLRYLNLSRTLIEV--LPESVNKLYKLQTLLLEDC 649 (946)
Q Consensus 616 ~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~ 649 (946)
.+|++|+|++|.+.. +..-...+++|++|+|++|
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 455555555555431 1111223445555555555
No 166
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.37 E-value=8e-06 Score=88.69 Aligned_cols=178 Identities=19% Similarity=0.174 Sum_probs=104.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|++..++.+..++..... .......+.|+|++|+|||++|+.+++. ....| +.+.++.....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~~-------- 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEKS-------- 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCSH--------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccch--------
Confidence 4699999999999988865311 0123456899999999999999999873 32222 23333221111
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCC------------------CCCcEEE
Q 043855 264 RSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAG------------------APGSKII 325 (946)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~------------------~~gs~ii 325 (946)
......+.. ..+..+|+||++..........+...+... .++..+|
T Consensus 95 --------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 95 --------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp --------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred --------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 111111111 235678889998766543333333322211 1134566
Q ss_pred EEcCChhH-H-HhhCC-CCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 326 VTTRNQGV-A-AIMGT-VPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 326 vTtR~~~v-~-~~~~~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
.||..... . ..... ...+.+.+++.++...++.+.+..... .--.+..+.|++.+.|.|-.+..+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 66655321 1 11122 257999999999999999876642211 1123567788889999995554443
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.37 E-value=1.9e-05 Score=87.68 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=77.1
Q ss_pred CCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceeeeccccCceeeCccccCCCCCC
Q 043855 772 LKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPI 851 (946)
Q Consensus 772 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 851 (946)
+..+..|+.+.+..+.. .++.... ..+.+++.+.+......+ ..+..+++|+.+.+.+ .++.++...+.
T Consensus 249 f~~~~~l~~~~~~~~~~-~i~~~~F-~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~--~i~~I~~~aF~----- 317 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKL-RIGGSLF-YNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLD--SVKFIGEEAFE----- 317 (394)
T ss_dssp TTTCSSCCEEEECCTTC-EECSCTT-TTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECT--TCCEECTTTTT-----
T ss_pred ccccccceeEEcCCCcc-eeecccc-ccccccceeccCceeecc--cccccccccccccccc--ccceechhhhc-----
Confidence 44566777777755432 2222111 145666666665432111 1356677888888753 46666654333
Q ss_pred cCCCcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCC----CCCCCCCEEEEcc-cccccccCCCCC
Q 043855 852 PFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLP----ERLPELKMFVIQS-CEELLVSVTSLP 926 (946)
Q Consensus 852 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp----~~l~~L~~L~i~~-c~~l~~~l~~l~ 926 (946)
.+.+|+.+.|.+ +++.+. ......+.+|+.+.+..+ ++ .++ .++++|+.+++.. .......+.+++
T Consensus 318 ~c~~L~~i~lp~--~v~~I~----~~aF~~c~~L~~i~lp~~--l~-~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~~c~ 388 (394)
T 4fs7_A 318 SCTSLVSIDLPY--LVEEIG----KRSFRGCTSLSNINFPLS--LR-KIGANAFQGCINLKKVELPKRLEQYRYDFEDTT 388 (394)
T ss_dssp TCTTCCEECCCT--TCCEEC----TTTTTTCTTCCEECCCTT--CC-EECTTTBTTCTTCCEEEEEGGGGGGGGGBCTTC
T ss_pred CCCCCCEEEeCC--cccEEh----HHhccCCCCCCEEEECcc--cc-EehHHHhhCCCCCCEEEECCCCEEhhheecCCC
Confidence 267788887753 233222 111446677888887643 55 454 3567888888854 233334566666
Q ss_pred CccEE
Q 043855 927 TLCRF 931 (946)
Q Consensus 927 ~L~~L 931 (946)
+|+.+
T Consensus 389 ~L~~I 393 (394)
T 4fs7_A 389 KFKWI 393 (394)
T ss_dssp EEEEE
T ss_pred CCcEE
Confidence 66654
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.35 E-value=7.9e-07 Score=87.76 Aligned_cols=45 Identities=24% Similarity=0.376 Sum_probs=38.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..++||+++++++.+++... ..+.+.|+|++|+|||++|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999998653 3356789999999999999999874
No 169
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=2.4e-06 Score=93.47 Aligned_cols=196 Identities=12% Similarity=0.081 Sum_probs=112.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCC-ceEEEEeCCCCCHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFD-LKAWTCVSDDFDVVRLIKVI 262 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 262 (946)
.+++|+++.++.+..++.... ...+.|+|++|+||||+|+.+++.......+. ....+..+....... +++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHHH
Confidence 458999999999999985432 23388999999999999999997421111111 223344443323322 2222
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChh-HH-HhhCCC
Q 043855 263 LRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQG-VA-AIMGTV 340 (946)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~-v~-~~~~~~ 340 (946)
+..+........... .....-.+++-+|++|++..........+...+.......++|++|.... +. ......
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 222211100000000 00111124567999999976655455555554443344567777775432 11 111123
Q ss_pred CcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 341 PAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 341 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
..+.+.+++.++....+...+....- ... ++..+.|++.++|.|-.+..+.
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENV-KCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 47899999999999998876643221 111 3567889999999988655443
No 170
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.29 E-value=6.8e-07 Score=91.96 Aligned_cols=174 Identities=15% Similarity=0.090 Sum_probs=99.0
Q ss_pred ccccc---hhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHH
Q 043855 185 HVYGR---EIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKV 261 (946)
Q Consensus 185 ~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 261 (946)
+++|. +...+.+..+.... ..+.+.|+|++|+||||||+.+++. .......+.|+.++...+.
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~------ 94 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI------ 94 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS------
T ss_pred hccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH------
Confidence 46663 34555555555432 3467889999999999999999974 2222334567766442110
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhh--HhhhhccCCCC-CCC-cEEEEEcCCh------
Q 043855 262 ILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYND--WVELSHPFEAG-APG-SKIIVTTRNQ------ 331 (946)
Q Consensus 262 il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~--w~~~~~~l~~~-~~g-s~iivTtR~~------ 331 (946)
+ . . .+ +.+ .++.+|||||++...... ...+...+... ..+ .++|+||+..
T Consensus 95 ----~----~-~---------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 ----S----T-A---------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp ----C----G-G---------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred ----H----H-H---------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 0 0 0 00 011 346789999996543222 22232221110 112 2477777632
Q ss_pred ---hHHHhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhh
Q 043855 332 ---GVAAIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGG 396 (946)
Q Consensus 332 ---~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 396 (946)
.+...+.....+.+.+++.++..+++...+..... ... .+..+.|++.++|.+-.+..+..
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLP---EDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCC---HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHccCCHHHHHHHHH
Confidence 12222222257999999999999999887642211 111 35667888999998876655443
No 171
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.28 E-value=1.3e-05 Score=86.43 Aligned_cols=174 Identities=14% Similarity=0.088 Sum_probs=105.8
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc--------------------ccCCceEEEEe
Q 043855 190 EIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVR--------------------DHFDLKAWTCV 249 (946)
Q Consensus 190 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~~ 249 (946)
++..+.+.+.+... .-.+.+.++|+.|+||||+|+.+++.-.-. .|++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 44556677766543 234678999999999999999998632100 1122 223322
Q ss_pred C---CCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEE
Q 043855 250 S---DDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIV 326 (946)
Q Consensus 250 ~---~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iiv 326 (946)
. ....+.+ .+++.+.+...+ ..+++-++|+|+++..+......+...+.....++.+|+
T Consensus 82 ~~~~~~~~i~~-ir~l~~~~~~~~-----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 82 EKGKNTLGVDA-VREVTEKLNEHA-----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp CTTCSSBCHHH-HHHHHHHTTSCC-----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred cccCCCCCHHH-HHHHHHHHhhcc-----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 1 1112211 122222222111 135678999999987765566666666655445677777
Q ss_pred EcCChh-H-HHhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhh
Q 043855 327 TTRNQG-V-AAIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGG 396 (946)
Q Consensus 327 TtR~~~-v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 396 (946)
+|.+.+ + .........+.+.++++++..+.+.+.. . .. .+....+++.++|.|..+..+..
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~--~~---~~~~~~l~~~s~G~~r~a~~~l~ 206 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T--MS---QDALLAALRLSAGSPGAALALFQ 206 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C--CC---HHHHHHHHHHTTTCHHHHHHTTS
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C--CC---HHHHHHHHHHcCCCHHHHHHHhc
Confidence 776543 2 2223345689999999999999988764 1 11 24457789999999987765543
No 172
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.24 E-value=5.6e-06 Score=92.54 Aligned_cols=179 Identities=19% Similarity=0.192 Sum_probs=102.7
Q ss_pred cccccchhHH---HHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC-CCHHHHH
Q 043855 184 AHVYGREIEK---KEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD-FDVVRLI 259 (946)
Q Consensus 184 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~ 259 (946)
.+++|.+..+ ..+...+... ....+.|+|++|+||||+|+.+++. ....| +.++.. ....+ +
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH-H
Confidence 4588988877 6677777543 3467899999999999999999983 32222 222221 12222 1
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEE-EcCChh--H-HH
Q 043855 260 KVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIV-TTRNQG--V-AA 335 (946)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iiv-TtR~~~--v-~~ 335 (946)
++++... ......+++.+|+||++........+.+...+..+ ...+|. ||.+.. + ..
T Consensus 92 r~~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 REAIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHH
T ss_pred HHHHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHH
Confidence 2222111 11112467899999999776544444554444431 233443 555542 1 22
Q ss_pred hhCCCCcEeCCCCChHHHHHHHHHhhcCCCCC---CCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 336 IMGTVPAYQLKKLSDHDCLALFARHSLGTRDF---SSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 336 ~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~---~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
......++.+.+++.++...++.+.+...... ....--.+..+.|++.++|.+-.+..+-
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 23345678999999999999998876431110 1111224566778888999876554443
No 173
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.17 E-value=3e-05 Score=85.19 Aligned_cols=199 Identities=13% Similarity=0.093 Sum_probs=106.2
Q ss_pred cccccchhHHHH---HHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEe----CCCCCHH
Q 043855 184 AHVYGREIEKKE---IVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCV----SDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~----~~~~~~~ 256 (946)
.+++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+++.. .... ..+.+.. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l--~~~~-~~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQAL--GPDT-PFTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHH--CSSC-CEEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHh--cccC-Ccccccchhhhhcccchh
Confidence 469999988776 444444332 223688999999999999999999842 2211 1122222 1223344
Q ss_pred HHHHHHHHHhcCCC---------------------C-------C-CcccHHHHHHHHHHHh-----CCc----eEEEEEc
Q 043855 257 RLIKVILRSFVADP---------------------N-------V-DNRDLILLQLQLKKQL-----SGK----KFLFVLD 298 (946)
Q Consensus 257 ~~~~~il~~l~~~~---------------------~-------~-~~~~~~~~~~~l~~~l-----~~k----r~LlVlD 298 (946)
+.+.+.+....... . . .......+...+.... .++ +.+|+||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 44444433321100 0 0 0000112222221111 233 3599999
Q ss_pred CCCCCChhhHhhhhccCCCCCCCcEEEEEcCC-------------hhH-HHhhCCCCcEeCCCCChHHHHHHHHHhhcCC
Q 043855 299 DVWNESYNDWVELSHPFEAGAPGSKIIVTTRN-------------QGV-AAIMGTVPAYQLKKLSDHDCLALFARHSLGT 364 (946)
Q Consensus 299 dv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~-------------~~v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~ 364 (946)
++..........+...+...... .++++|.. ..+ .........+.+.+++.++..+++...+...
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHc
Confidence 99776655555555555443333 34444431 011 1122233458999999999999998776432
Q ss_pred CCCCCchhHHHHHHHHHHhcC-CChhHHHHH
Q 043855 365 RDFSSHKSLEKIGREIVTKCD-GLPLAAKTL 394 (946)
Q Consensus 365 ~~~~~~~~l~~~~~~i~~~~~-GlPLai~~~ 394 (946)
.. .. -.+..+.|++.+. |.|-.+..+
T Consensus 276 ~~-~~---~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 276 DV-EM---SEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TC-CB---CHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CC-CC---CHHHHHHHHHHhcCCCHHHHHHH
Confidence 21 11 1355677888887 777655443
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.16 E-value=6.9e-06 Score=86.79 Aligned_cols=185 Identities=16% Similarity=0.115 Sum_probs=100.2
Q ss_pred ccccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCH
Q 043855 183 EAHVYGREIEKKEIVELLLRDDL-------MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDV 255 (946)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 255 (946)
-.+++|.+..+++|.+.+..... .+-...+.+.|+|++|+|||+||+.+++. ....| +.+..+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~-- 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELV-- 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHH--
Confidence 35699999999999887743200 00123456889999999999999999984 22222 223222111
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCC-----------Chh---hHhhhhccCC--CCC
Q 043855 256 VRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNE-----------SYN---DWVELSHPFE--AGA 319 (946)
Q Consensus 256 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~---~w~~~~~~l~--~~~ 319 (946)
... .......+...+......++.+|+|||+... +.. ....+...+. ...
T Consensus 89 ------------~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 89 ------------KKF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp ------------CCS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred ------------Hhc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 000 1111122222333333456789999999532 100 1111111111 122
Q ss_pred CCcEEEEEcCChhHHH--hhC---CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCC-ChhHHHH
Q 043855 320 PGSKIIVTTRNQGVAA--IMG---TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDG-LPLAAKT 393 (946)
Q Consensus 320 ~gs~iivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~G-lPLai~~ 393 (946)
.+..||.||....... ... -...+.+...+.++..+++...+..... ..... ...|++.+.| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 4567777887543211 111 1236899999999999999887643221 11112 3567777777 4544443
No 175
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=8.3e-06 Score=89.19 Aligned_cols=198 Identities=14% Similarity=0.075 Sum_probs=106.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc---cccc-cCC-----------------
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDD---RVRD-HFD----------------- 242 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~-~F~----------------- 242 (946)
.+++|.+...+.+.+++.... .... +.|+|++|+||||+|+.++... .... .++
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhCC----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 458999998888888772221 1223 8999999999999999987621 1000 000
Q ss_pred ---ceEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCC
Q 043855 243 ---LKAWTCVSDDF-DVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAG 318 (946)
Q Consensus 243 ---~~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~ 318 (946)
..+.+..+... ......++++..+....... ... .+.. +.+++-++|||++...+......+...+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD-----FQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhcccc-----ccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 01111111100 00012223333322111100 000 0000 2346779999999876655555555544433
Q ss_pred CCCcEEEEEcCCh-hHH-HhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHhh
Q 043855 319 APGSKIIVTTRNQ-GVA-AIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLGG 396 (946)
Q Consensus 319 ~~gs~iivTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~~ 396 (946)
..+..+|++|... .+. ........+++.+++.++..+.+...+...+- ... -.+..+.|++.++|.+-.+..+..
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~--~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLE--TKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EEC--CSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCC--cHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3466777777653 221 22234467999999999999999876532111 111 024567888999998876655443
No 176
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.14 E-value=8.7e-06 Score=87.75 Aligned_cols=175 Identities=16% Similarity=0.158 Sum_probs=102.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
.+++|.+..++.+.+++.... ...++.+.|++|+|||++|+.+++. ... ..+.++.+. ... +.+++.+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~-~~~-~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSD-CKI-DFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTT-CCH-HHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEcccc-cCH-HHHHHHH
Confidence 468999999999999997542 3467888899999999999999974 221 234444433 222 2222222
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCC-hhhHhhhhccCCCCCCCcEEEEEcCChh-----HHHhh
Q 043855 264 RSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNES-YNDWVELSHPFEAGAPGSKIIVTTRNQG-----VAAIM 337 (946)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~w~~~~~~l~~~~~gs~iivTtR~~~-----v~~~~ 337 (946)
....... ...+++-++|+||+.... ......+...+.....+.++|+||.... +...
T Consensus 94 ~~~~~~~----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR- 156 (324)
T 3u61_B 94 TNFASAA----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR- 156 (324)
T ss_dssp HHHHHBC----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH-
T ss_pred HHHHhhc----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh-
Confidence 2211110 012478899999997665 4444444444433234567888887643 2222
Q ss_pred CCCCcEeCCCCChHHHHHHH-------HHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHH
Q 043855 338 GTVPAYQLKKLSDHDCLALF-------ARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAK 392 (946)
Q Consensus 338 ~~~~~~~l~~L~~~e~~~Lf-------~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 392 (946)
...+.+.+++.++-.+++ ...+.... ....+ .+....|++.++|.+-.+.
T Consensus 157 --~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~-~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 157 --CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEG-IAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp --SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT-CCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred --CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC-CCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 247899999988843332 22221111 11111 2556778888888765433
No 177
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.13 E-value=1e-05 Score=90.60 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=95.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF--DLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQL 288 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 288 (946)
...+.|+|++|+||||||+.+++. ....+ ..+++++.. .+..++...+.... . ..+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~------~----~~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEGK------L----NEFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTTC------H----HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHccc------H----HHHHHHh
Confidence 567899999999999999999983 32222 123444433 33444444443211 1 1233334
Q ss_pred CCceEEEEEcCCCCCCh--hhHhhhhccCCC-CCCCcEEEEEcCCh---------hHHHhhCCCCcEeCCCCChHHHHHH
Q 043855 289 SGKKFLFVLDDVWNESY--NDWVELSHPFEA-GAPGSKIIVTTRNQ---------GVAAIMGTVPAYQLKKLSDHDCLAL 356 (946)
Q Consensus 289 ~~kr~LlVlDdv~~~~~--~~w~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~L 356 (946)
..+.-+|+|||++.... ...+.+...+.. ...|..||+||... .+...+.....+.+.+++.++..++
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 44677999999965432 122233322211 12467888888762 2333333345789999999999999
Q ss_pred HHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHH
Q 043855 357 FARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKT 393 (946)
Q Consensus 357 f~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~ 393 (946)
+.+.+....- ..++ ++...|++.+.|.+-.+.-
T Consensus 272 L~~~~~~~~~-~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 272 ARKMLEIEHG-ELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHHTC-CCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHcCC-CCCH---HHHHHHHHhcCCCHHHHHH
Confidence 9887642111 1122 3466788889998855443
No 178
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.06 E-value=1.7e-06 Score=94.85 Aligned_cols=83 Identities=22% Similarity=0.155 Sum_probs=43.3
Q ss_pred ccCceeEEEecCCCCccC-----Cccc-cCCCCCcEEeccCCCccc-----cccchhcCCCCcEEecCCCCchh-----h
Q 043855 591 RLQRLRVFSLCGYEIFEL-----PDSI-GELRHLRYLNLSRTLIEV-----LPESVNKLYKLQTLLLEDCDRLK-----K 654 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~l-----p~~i-~~l~~Lr~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~-----~ 654 (946)
.+++|+.|+|++|.+... ...+ ....+|++|+|++|.++. ++..+..+++|++|+|++|. ++ .
T Consensus 124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~ 202 (372)
T 3un9_A 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLEL 202 (372)
T ss_dssp HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHH
T ss_pred HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHH
Confidence 344566666666655421 1112 234556666666665542 34444556666666666663 22 2
Q ss_pred chhhhcccCccCeeecCCCC
Q 043855 655 LCASLGNLINLHHLNNSNTD 674 (946)
Q Consensus 655 lp~~i~~L~~L~~L~l~~~~ 674 (946)
++..+...++|++|++++|.
T Consensus 203 L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 203 LAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHhcCCCcCeEECCCCC
Confidence 23445555566666666665
No 179
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=1.2e-06 Score=95.23 Aligned_cols=15 Identities=0% Similarity=-0.104 Sum_probs=9.4
Q ss_pred hcccCceeEEEecCC
Q 043855 589 LLRLQRLRVFSLCGY 603 (946)
Q Consensus 589 l~~~~~Lr~L~L~~~ 603 (946)
+.++++|+.|.+.+.
T Consensus 135 ~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDI 149 (362)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred hhhcchhhheeecCc
Confidence 336677777777543
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.05 E-value=1.4e-05 Score=83.26 Aligned_cols=187 Identities=12% Similarity=0.081 Sum_probs=98.3
Q ss_pred cccccchhHHHHHHHHHh---cCCCC---CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLL---RDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.+++|.+..++.+.+++. ..... +....+.+.|+|++|+|||++|+.+++. .... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--
Confidence 458999988877766543 21100 0123456789999999999999999983 2222 234444432110
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCC------------h---hhHhhhhccCCC--CCC
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNES------------Y---NDWVELSHPFEA--GAP 320 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~---~~w~~~~~~l~~--~~~ 320 (946)
. .......+...+.......+.+|+|||++... . .....+...+.. ...
T Consensus 79 ------------~--~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 ------------I--GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp ------------S--TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred ------------c--cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0 11112222233333334567899999996531 0 011122221111 123
Q ss_pred CcEEEEEcCChhHH-Hh-hC--C-CCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChh-HHHHH
Q 043855 321 GSKIIVTTRNQGVA-AI-MG--T-VPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPL-AAKTL 394 (946)
Q Consensus 321 gs~iivTtR~~~v~-~~-~~--~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~ 394 (946)
+..||.||...... .. .. . ...+.+...+.++-.+++...+..... . .........+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~--~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-T--QSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-C--BTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-C--cchhhHHHHHHHHCCCCCHHHHHHH
Confidence 45667777654321 11 11 1 246788999999999998876543221 1 1112234678888888754 44433
No 181
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.04 E-value=5.9e-05 Score=78.85 Aligned_cols=171 Identities=14% Similarity=0.097 Sum_probs=92.6
Q ss_pred ccccchhHHHHHHH-------HHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 185 HVYGREIEKKEIVE-------LLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 185 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.++|.....++++. .+.... ....+.+.|+|++|+|||+||+.+++. .... .+.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~---~~~i~~~~~----- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFP---FIKICSPDK----- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCS---EEEEECGGG-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEeCHHH-----
Confidence 46777777666665 332211 245678999999999999999999984 2222 122332221
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCC---------ChhhH-hhhhccCC---CCCCCcEE
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNE---------SYNDW-VELSHPFE---AGAPGSKI 324 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~w-~~~~~~l~---~~~~gs~i 324 (946)
+.+.. .......+...+......+..+|+|||+... ....+ ..+...+. .......|
T Consensus 101 --------~~g~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 --------MIGFS--ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp --------CTTCC--HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred --------hcCCc--hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 11100 1111122333344444567899999998431 01112 22222221 12233456
Q ss_pred EEEcCChhHHHhh---CC-CCcEeCCCCCh-HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCC
Q 043855 325 IVTTRNQGVAAIM---GT-VPAYQLKKLSD-HDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGL 387 (946)
Q Consensus 325 ivTtR~~~v~~~~---~~-~~~~~l~~L~~-~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~Gl 387 (946)
|.||...+..... +. ...+.+.++++ ++...++.... ... .+....|++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~------~~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG------NFK---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT------CSC---HHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC------CCC---HHHHHHHHHHhcCC
Confidence 7778776554331 22 34688999988 66666665531 111 24466788888873
No 182
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.03 E-value=2.4e-05 Score=83.71 Aligned_cols=161 Identities=14% Similarity=0.070 Sum_probs=88.7
Q ss_pred ccccchhHHHHHHHHHhcCC---------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCH
Q 043855 185 HVYGREIEKKEIVELLLRDD---------LMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDV 255 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 255 (946)
+++|.+..++.|.+++.... .........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47898888888876653210 001234457899999999999999988874221111111123333211
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCC---------ChhhHhhhhccCCCCCCCcEEEE
Q 043855 256 VRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNE---------SYNDWVELSHPFEAGAPGSKIIV 326 (946)
Q Consensus 256 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~w~~~~~~l~~~~~gs~iiv 326 (946)
.+.... .......+...+... +.-+|+||++... .......+...+.....+..||.
T Consensus 109 ---------~l~~~~--~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ---------DLVGQY--IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ---------GTCCSS--TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ---------Hhhhhc--ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 111110 111112222223222 2359999999733 33333445444444445667888
Q ss_pred EcCChhHHHhh--C------CCCcEeCCCCChHHHHHHHHHhhc
Q 043855 327 TTRNQGVAAIM--G------TVPAYQLKKLSDHDCLALFARHSL 362 (946)
Q Consensus 327 TtR~~~v~~~~--~------~~~~~~l~~L~~~e~~~Lf~~~a~ 362 (946)
||......... . ....+.+.+++.++..+++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 88654321111 1 125789999999999999887654
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=1.8e-05 Score=90.81 Aligned_cols=198 Identities=15% Similarity=0.157 Sum_probs=108.3
Q ss_pred cccccchhHHHHHHHHHhcCCC-----------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC
Q 043855 184 AHVYGREIEKKEIVELLLRDDL-----------MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD 252 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 252 (946)
.+++|++..++++.+|+..... ...+..+.+.|+|++|+||||+|+.+++.. . + ..+.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l--~--~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL--G--Y-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--T--C-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--C--C-CEEEEeCCCc
Confidence 4699999999999999965110 001234689999999999999999999843 1 2 2344455444
Q ss_pred CCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChh---hHhhhhccCCCCCCCcEEEEEcC
Q 043855 253 FDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYN---DWVELSHPFEAGAPGSKIIVTTR 329 (946)
Q Consensus 253 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~---~w~~~~~~l~~~~~gs~iivTtR 329 (946)
... .+....+........... -...... .....+++.+||||++...... .+..+...+.. .+..||+++.
T Consensus 114 ~~~-~~~~~~i~~~~~~~~~~~-~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~ 187 (516)
T 1sxj_A 114 RSK-TLLNAGVKNALDNMSVVG-YFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICN 187 (516)
T ss_dssp CCH-HHHHHTGGGGTTBCCSTT-TTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEES
T ss_pred chH-HHHHHHHHHHhccccHHH-HHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEc
Confidence 333 222332222211110000 0000000 0012357889999999654321 12333332222 2334555554
Q ss_pred Chh---HHHhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCC-ChhHHHHHhh
Q 043855 330 NQG---VAAIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDG-LPLAAKTLGG 396 (946)
Q Consensus 330 ~~~---v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~G-lPLai~~~~~ 396 (946)
... +.........+.+.+++.++..+++...+..... ...+ +....|++.++| ++-++..+..
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i~~---~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KLDP---NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CCCT---THHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CCCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 322 2222233457899999999999988776543221 1111 346678889999 4555555543
No 184
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.02 E-value=0.00017 Score=79.98 Aligned_cols=141 Identities=9% Similarity=0.067 Sum_probs=83.2
Q ss_pred CCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecCCCCCCCCCCCCCCCCceeeeccccCceeeCccccCCCCCCcCC
Q 043855 775 HKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFL 854 (946)
Q Consensus 775 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 854 (946)
+.+|+.+.+... ...+..... ..+.+|+.+.+..+...-.-..+..++.|+.+..... .++...+ ..+.
T Consensus 229 ~~~l~~i~ip~~-~~~i~~~~f-~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F-----~~~~ 297 (394)
T 4fs7_A 229 KTGVKNIIIPDS-FTELGKSVF-YGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSV----IVPEKTF-----YGCS 297 (394)
T ss_dssp TCCCCEEEECTT-CCEECSSTT-TTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSS----EECTTTT-----TTCT
T ss_pred cCCCceEEECCC-ceecccccc-cccccceeEEcCCCcceeeccccccccccceeccCce----eeccccc-----cccc
Confidence 456777776532 222222221 1567888888876542211224666777887776542 2333222 2377
Q ss_pred CcceeeccCCcccccccccCCCCCCCCCCcccEeeecCCcCccccCC----CCCCCCCEEEEccc-ccc-cccCCCCCCc
Q 043855 855 CLETLCFEDMREWEDWIPCGSSQGIELFPNLREFRILRCPKLQGTLP----ERLPELKMFVIQSC-EEL-LVSVTSLPTL 928 (946)
Q Consensus 855 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp----~~l~~L~~L~i~~c-~~l-~~~l~~l~~L 928 (946)
+|+.+.+.+ ++..+. ......+.+|+.++|.+ .++ .++ .++.+|+.+.+... ..+ ...+..|++|
T Consensus 298 ~L~~i~l~~--~i~~I~----~~aF~~c~~L~~i~lp~--~v~-~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 298 SLTEVKLLD--SVKFIG----EEAFESCTSLVSIDLPY--LVE-EIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINL 368 (394)
T ss_dssp TCCEEEECT--TCCEEC----TTTTTTCTTCCEECCCT--TCC-EECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTC
T ss_pred ccccccccc--ccceec----hhhhcCCCCCCEEEeCC--ccc-EEhHHhccCCCCCCEEEECccccEehHHHhhCCCCC
Confidence 888888864 233332 11145678899999864 355 565 35788999988542 233 2367789999
Q ss_pred cEEEEcC
Q 043855 929 CRFKIGG 935 (946)
Q Consensus 929 ~~L~l~~ 935 (946)
+.+.+..
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 9999854
No 185
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.01 E-value=4.7e-05 Score=82.48 Aligned_cols=182 Identities=13% Similarity=0.143 Sum_probs=103.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCC-ceEEEEeCCCCCHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFD-LKAWTCVSDDFDVVRLIKVI 262 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 262 (946)
.+++|.+..++.|..++... +...+.++|++|+||||+|+.++.... ...+. .+.-++.+.......+ +++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVV-RNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHH-HHH
Confidence 34789888888888888543 223388999999999999999987321 11111 1122222222222111 111
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChh-HH-HhhCCC
Q 043855 263 LRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQG-VA-AIMGTV 340 (946)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~-v~-~~~~~~ 340 (946)
+..+.... ....+.+-++|+|++..........+...+......+++|++|.... +. ......
T Consensus 97 i~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 97 IKDFASTR---------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHHBC---------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhhc---------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 11111000 00123477899999976655555555544443334567777765432 11 112234
Q ss_pred CcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHH
Q 043855 341 PAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAK 392 (946)
Q Consensus 341 ~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~ 392 (946)
..+.+.++++++..+.+...+-...- ... .+..+.|++.++|.+--+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~-~i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKL-KLS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC-CBC---HHHHHHHHHHHTTCHHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHH
Confidence 57899999999998888776532111 111 3456788888999886443
No 186
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=2.2e-06 Score=81.55 Aligned_cols=92 Identities=9% Similarity=0.026 Sum_probs=56.4
Q ss_pred CCccEEEEecCCCCC-CCCCCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCC
Q 043855 801 SNLVTLKFEDCGMCT-SLPSVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGI 879 (946)
Q Consensus 801 ~~L~~L~L~~~~~~~-~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 879 (946)
.+|++|++++|.+.+ .+..+..+++|+.|+|++|..+++.+....... ....++|++|+|++|+++++-. .. ..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-~~~~~~L~~L~Ls~C~~ITD~G-l~---~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-ENLQKSMLEMEIISCGNVTDKG-II---AL 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-HHHHHHCCEEEEESCTTCCHHH-HH---HG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-ccccCCCCEEEcCCCCcCCHHH-HH---HH
Confidence 468889998888543 455677888888888888877766543322210 0013457777777776655432 11 12
Q ss_pred CCCCcccEeeecCCcCcc
Q 043855 880 ELFPNLREFRILRCPKLQ 897 (946)
Q Consensus 880 ~~~p~L~~L~l~~c~~L~ 897 (946)
..+|+|++|+|++|++++
T Consensus 136 ~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGCTTCCEEEEESCTTCC
T ss_pred hcCCCCCEEECCCCCCCC
Confidence 356677777777776665
No 187
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.98 E-value=4e-06 Score=91.09 Aligned_cols=14 Identities=0% Similarity=-0.123 Sum_probs=8.8
Q ss_pred ccccccceeeccCC
Q 043855 559 LYDIVCLRTFLPVN 572 (946)
Q Consensus 559 ~~~~~~LrsL~~~~ 572 (946)
...+++||+|.+.+
T Consensus 135 ~~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 135 KEKFAHFEGLFWGD 148 (362)
T ss_dssp HHHHTTCSEEEECC
T ss_pred hhhcchhhheeecC
Confidence 34566777776644
No 188
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.94 E-value=1.3e-05 Score=74.75 Aligned_cols=115 Identities=12% Similarity=-0.055 Sum_probs=68.2
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHH
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILR 264 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 264 (946)
+++|+...++++.+.+..... ...-|.|+|++|+|||++|+.+++.... .... .+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCC-EE-EECCCCCcc---------
Confidence 478999999999988754321 2234689999999999999999974211 1112 23 555543221
Q ss_pred HhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh
Q 043855 265 SFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ 331 (946)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~ 331 (946)
.... ..+... +.-.|+||++..........+...+.......+||.||...
T Consensus 66 ----------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ----------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ----------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ----------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 0011 111111 22468999998776555555555554444456788777653
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.93 E-value=9e-06 Score=79.55 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=38.0
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..++||+.+++.+.+.+... ..+.+.|+|++|+||||||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999998653 2356789999999999999999874
No 190
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=3.8e-06 Score=79.83 Aligned_cols=84 Identities=12% Similarity=0.200 Sum_probs=48.4
Q ss_pred CCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCC----CCcccEeeecCCcCccc-
Q 043855 824 PSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIEL----FPNLREFRILRCPKLQG- 898 (946)
Q Consensus 824 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~----~p~L~~L~l~~c~~L~~- 898 (946)
.+|+.|++++|. +++.+.... ..+++|+.|+|++|..+++.. ... +.. .++|++|+|++|+++++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-----~~~~~L~~L~L~~C~~ItD~g-L~~---L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-----EGLQYVEKIRLCKCHYIEDGC-LER---LSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-----TTCSCCCEEEEESCTTCCHHH-HHH---HHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-----cCCCCCCEEEeCCCCccCHHH-HHH---HHhcccccCCCCEEEcCCCCcCCHH
Confidence 468999999886 555443322 236777777777776665532 110 112 24577777777766653
Q ss_pred ---cCCCCCCCCCEEEEcccccc
Q 043855 899 ---TLPERLPELKMFVIQSCEEL 918 (946)
Q Consensus 899 ---~lp~~l~~L~~L~i~~c~~l 918 (946)
.+ ..+++|+.|++++|+.+
T Consensus 131 Gl~~L-~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 131 GIIAL-HHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp HHHHG-GGCTTCCEEEEESCTTC
T ss_pred HHHHH-hcCCCCCEEECCCCCCC
Confidence 12 23566666666666655
No 191
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.84 E-value=0.00075 Score=72.07 Aligned_cols=187 Identities=18% Similarity=0.093 Sum_probs=101.0
Q ss_pred cccccchhHHHHHHHHHhc----CCC--CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLLR----DDL--MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.+++|.+..++.|.+.+.. .+. +.....+.+.|+|++|+|||+||+.+++... ... .+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHHh---
Confidence 5689999988888876632 110 0112346788999999999999999998420 111 22333332110
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCC-------hhhH----hhhhc---cCCCCCCCcE
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNES-------YNDW----VELSH---PFEAGAPGSK 323 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~~w----~~~~~---~l~~~~~gs~ 323 (946)
.. .......+...+...-..++.+|+||++.... .... ..+.. .+.....+..
T Consensus 85 -----------~~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 85 -----------KW--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp -----------SS--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred -----------hh--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 00 11112222222323334578899999996431 0001 11111 1111224455
Q ss_pred EEEEcCChh-----HHHhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCC-hhHHHHHhh
Q 043855 324 IIVTTRNQG-----VAAIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGL-PLAAKTLGG 396 (946)
Q Consensus 324 iivTtR~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~~~ 396 (946)
||.||.... +.. .-...+.+...+.++-.+++......... .. -......|++.+.|. +-.|..+..
T Consensus 152 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQN-SL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCB-CC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666665432 112 12246788888888888998876533211 11 124467788999887 444555443
No 192
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.84 E-value=4.5e-05 Score=82.07 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=86.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhC
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLS 289 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 289 (946)
....+.|+|++|+||||||+.+++..... . ..++++++ .++...+...+... ..... ...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~-~-~~~~~i~~------~~~~~~~~~~~~~~------~~~~~----~~~~- 96 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR-G-YRVIYSSA------DDFAQAMVEHLKKG------TINEF----RNMY- 96 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT-T-CCEEEEEH------HHHHHHHHHHHHHT------CHHHH----HHHH-
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC-C-CEEEEEEH------HHHHHHHHHHHHcC------cHHHH----HHHh-
Confidence 34678899999999999999999842111 1 12345543 23333444333211 11111 1122
Q ss_pred CceEEEEEcCCCCCCh--hhHhhhhccCCC-CCCCcEEEEEcCCh---------hHHHhhCCCCcEeCCCCChHHHHHHH
Q 043855 290 GKKFLFVLDDVWNESY--NDWVELSHPFEA-GAPGSKIIVTTRNQ---------GVAAIMGTVPAYQLKKLSDHDCLALF 357 (946)
Q Consensus 290 ~kr~LlVlDdv~~~~~--~~w~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf 357 (946)
.+.-+|+|||+..... .....+...+.. ...|..||+||... .+...+.....+.+.+ +.++..+++
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il 175 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII 175 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHH
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHH
Confidence 2366999999965432 112223222211 12355788877642 2223333335689999 999999999
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHHhcCCChh
Q 043855 358 ARHSLGTRDFSSHKSLEKIGREIVTKCDGLPL 389 (946)
Q Consensus 358 ~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPL 389 (946)
...+..... ..+ .+..+.|++.+ |.+-
T Consensus 176 ~~~~~~~~~-~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 176 KEKLKEFNL-ELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHHTTC-CCC---HHHHHHHHHHC-SSHH
T ss_pred HHHHHhcCC-CCC---HHHHHHHHHhC-CCHH
Confidence 887643221 122 34566788888 7654
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.83 E-value=0.00012 Score=79.47 Aligned_cols=185 Identities=16% Similarity=0.087 Sum_probs=99.4
Q ss_pred cccccchhHHHHHHHHHhcC----CC--CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLLRD----DL--MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.+++|.+..++.|.+.+... .. ......+-|.|+|++|+|||+||+.+++. ....| +.+..+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 45899999999998876321 00 01122356789999999999999999984 32222 222221 1
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChh-----------hHhhhhccC---CCCCCCcE
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYN-----------DWVELSHPF---EAGAPGSK 323 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~w~~~~~~l---~~~~~gs~ 323 (946)
+ ..... ......+...+...-..++.+|+||++...... ....+...+ .....+..
T Consensus 120 l----~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 120 L----VSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp H----HSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred H----hhhhc------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 1 11110 111122222233333457899999999643210 011121111 11224556
Q ss_pred EEEEcCChh-----HHHhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCC-hhHHHHHh
Q 043855 324 IIVTTRNQG-----VAAIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGL-PLAAKTLG 395 (946)
Q Consensus 324 iivTtR~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~~ 395 (946)
||.||.... +.. .-...+.+...+.++-.+++...+..... ... ......|++.+.|. +-.|..+.
T Consensus 190 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS-VLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 666776542 222 22346788888999999999877643221 111 23456788889884 54454443
No 194
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.80 E-value=0.00026 Score=75.86 Aligned_cols=185 Identities=16% Similarity=0.047 Sum_probs=101.9
Q ss_pred cccccchhHHHHHHHHHhcC----C--CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLLRD----D--LMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.+++|.+..++.|.+.+... . .......+-+.|+|++|+|||+||+.+++. ....| +.|+.+ +
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------H
Confidence 56899999999998877310 0 001223467899999999999999999983 33222 223221 1
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh-----------hhHhhhhcc---CCCCCCCcE
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY-----------NDWVELSHP---FEAGAPGSK 323 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~w~~~~~~---l~~~~~gs~ 323 (946)
+ .... .......+...+...-..++.+|+||++..... .....+... +.....+..
T Consensus 87 l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 L----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp H----HTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred H----hhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 1 1111 011112222223333345678999999964211 001222221 222234556
Q ss_pred EEEEcCChhH-----HHhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCC-hhHHHHHh
Q 043855 324 IIVTTRNQGV-----AAIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGL-PLAAKTLG 395 (946)
Q Consensus 324 iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~~ 395 (946)
||.||..... ... -...+.+...+.++-.+++...+..... ... ......|++.+.|. +-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~R--f~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRR--FERRIYIPLPDLAARTTMFEINVGDTPC-VLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHTTCCC-CCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcc--cCeEEEeCCCCHHHHHHHHHHHhccCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 6667765422 222 2245778888999999999887643221 111 23456788888874 54454443
No 195
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.80 E-value=0.00089 Score=74.08 Aligned_cols=121 Identities=12% Similarity=0.209 Sum_probs=66.2
Q ss_pred CCCCccEEEEecCCCCCCCCCCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCC
Q 043855 799 SFSNLVTLKFEDCGMCTSLPSVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQG 878 (946)
Q Consensus 799 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 878 (946)
.+.+|+.+.+.+....-.-..+.++++|+.+.+. ..+..++...+. .+.+|+.+.|.+ +++.+. ...
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~-----~c~~L~~i~lp~--~v~~I~----~~a 329 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS--SRITELPESVFA-----GCISLKSIDIPE--GITQIL----DDA 329 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTT-----TCTTCCEEECCT--TCCEEC----TTT
T ss_pred ecccccEEecccccceecCcccccccccccccCC--CcccccCceeec-----CCCCcCEEEeCC--cccEeh----HhH
Confidence 4566777776543221111146667778887775 345666554433 267788887753 222222 111
Q ss_pred CCCCCcccEeeecCCcCccccCC----CCCCCCCEEEEcccccccccCCCCCCccEEEEcC
Q 043855 879 IELFPNLREFRILRCPKLQGTLP----ERLPELKMFVIQSCEELLVSVTSLPTLCRFKIGG 935 (946)
Q Consensus 879 ~~~~p~L~~L~l~~c~~L~~~lp----~~l~~L~~L~i~~c~~l~~~l~~l~~L~~L~l~~ 935 (946)
...+.+|+.+.|-. +++ .++ .++.+|+.+++.+.......+..+.+|+.+.+..
T Consensus 330 F~~C~~L~~i~ip~--sv~-~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 330 FAGCEQLERIAIPS--SVT-KIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAP 387 (394)
T ss_dssp TTTCTTCCEEEECT--TCC-BCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-------
T ss_pred hhCCCCCCEEEECc--ccC-EEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCC
Confidence 45677888888854 355 455 3578888888876544334556667777776653
No 196
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.79 E-value=8.9e-05 Score=78.26 Aligned_cols=149 Identities=8% Similarity=-0.011 Sum_probs=93.2
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc-ccccCCceEEEEeCC-CCCHHHHHHHHHHH
Q 043855 188 GREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDR-VRDHFDLKAWTCVSD-DFDVVRLIKVILRS 265 (946)
Q Consensus 188 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~-~~~~~~~~~~il~~ 265 (946)
|-++.++.|.+.+... +.+++.++|++|+||||+|+.+.+... .........++..+. ...+.+ .+++++.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 3345566677776443 257899999999999999999986311 111122334454432 233333 2344444
Q ss_pred hcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh-hHHHhhCCCCcEe
Q 043855 266 FVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ-GVAAIMGTVPAYQ 344 (946)
Q Consensus 266 l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~ 344 (946)
+...+. .+++-++|+|+++..+....+.+...+......+.+|++|.+. .+...+..- .++
T Consensus 74 ~~~~p~-----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 74 LNYSPE-----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HTSCCS-----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred Hhhccc-----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 432221 2567789999998877667777777666555677777766543 333333333 899
Q ss_pred CCCCChHHHHHHHHHhh
Q 043855 345 LKKLSDHDCLALFARHS 361 (946)
Q Consensus 345 l~~L~~~e~~~Lf~~~a 361 (946)
+.++++++..+.+.+.+
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999988765
No 197
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.79 E-value=1.8e-05 Score=77.37 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=37.6
Q ss_pred ccCceeEEEecCCCCcc-----CCccccCCCCCcEEeccCCCccc-----cccchhcCCCCcEEec--CCCCchh----h
Q 043855 591 RLQRLRVFSLCGYEIFE-----LPDSIGELRHLRYLNLSRTLIEV-----LPESVNKLYKLQTLLL--EDCDRLK----K 654 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~-----lp~~i~~l~~Lr~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L--~~~~~l~----~ 654 (946)
..+.|++|+|++|.+.. +...+....+|++|+|++|.|.. +...+...++|++|+| ++|..-. .
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 44455555555554432 22333344455555555555442 3344444455555555 4442111 1
Q ss_pred chhhhcccCccCeeecCCCC
Q 043855 655 LCASLGNLINLHHLNNSNTD 674 (946)
Q Consensus 655 lp~~i~~L~~L~~L~l~~~~ 674 (946)
+...+...++|++|++++|.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCcCEEeccCCC
Confidence 22333344455555555543
No 198
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.78 E-value=1.2e-05 Score=78.65 Aligned_cols=106 Identities=16% Similarity=0.091 Sum_probs=79.6
Q ss_pred hhhcccCceeEEEecCC-CCcc-----CCccccCCCCCcEEeccCCCccc-----cccchhcCCCCcEEecCCCCchh--
Q 043855 587 HQLLRLQRLRVFSLCGY-EIFE-----LPDSIGELRHLRYLNLSRTLIEV-----LPESVNKLYKLQTLLLEDCDRLK-- 653 (946)
Q Consensus 587 ~~l~~~~~Lr~L~L~~~-~~~~-----lp~~i~~l~~Lr~L~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~-- 653 (946)
..+...+.|++|+|++| .+.. +...+....+|++|+|++|.|.. +...+...++|++|+|++| .++
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHH
Confidence 33448899999999999 8763 45667788999999999999873 5566777899999999999 443
Q ss_pred ---hchhhhcccCccCeeec--CCCCCccc-----cccccCCCCCCcccCc
Q 043855 654 ---KLCASLGNLINLHHLNN--SNTDSLEE-----MPIGIGKLTSLQTLCS 694 (946)
Q Consensus 654 ---~lp~~i~~L~~L~~L~l--~~~~~~~~-----~p~~i~~l~~L~~L~~ 694 (946)
.+...+...++|++|++ ++|. ++. +...+...++|++|++
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L 158 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGY 158 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEec
Confidence 25667788889999999 7776 433 2223445566777754
No 199
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.78 E-value=1.8e-05 Score=81.30 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=48.7
Q ss_pred ccCceeEEEecCCCCccCC---ccccCCCCCcEEeccCCCccccccchhcCC--CCcEEecCCCCchhhch-------hh
Q 043855 591 RLQRLRVFSLCGYEIFELP---DSIGELRHLRYLNLSRTLIEVLPESVNKLY--KLQTLLLEDCDRLKKLC-------AS 658 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp---~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp-------~~ 658 (946)
+++.|++|+|++|.+..++ ..+..+++|++|+|++|.|..+ ..+..+. +|++|+|++|.....+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 5777777777777776543 4455677777777777777765 3344444 77777777774333333 22
Q ss_pred hcccCccCeee
Q 043855 659 LGNLINLHHLN 669 (946)
Q Consensus 659 i~~L~~L~~L~ 669 (946)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55666666665
No 200
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.75 E-value=8.7e-05 Score=83.86 Aligned_cols=145 Identities=14% Similarity=0.153 Sum_probs=79.8
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccC------C-ceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF------D-LKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F------~-~~~wv~~~~~~~~~ 256 (946)
..++||+.+++.++..|.... ..-+.|+|++|+|||++|+.+++. +...+ . ..+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 359999999999999996532 234579999999999999999973 21111 1 11222222
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhHHHh
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGVAAI 336 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~~~ 336 (946)
....+. ...... ..+...-..++.+|++|. ..+....+...+.. ...++|.+|........
T Consensus 246 -------~~~~g~---~e~~~~---~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 246 -------TKYRGE---FEDRLK---KVMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKY 306 (468)
T ss_dssp -----------------CTTHH---HHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHH
T ss_pred -------ccccch---HHHHHH---HHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHH
Confidence 000000 011122 222233345678999991 11222334444432 23566666665542111
Q ss_pred -------hCCCCcEeCCCCChHHHHHHHHHhh
Q 043855 337 -------MGTVPAYQLKKLSDHDCLALFARHS 361 (946)
Q Consensus 337 -------~~~~~~~~l~~L~~~e~~~Lf~~~a 361 (946)
......+.+.+.+.++..+++...+
T Consensus 307 ~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1123468999999999999998754
No 201
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.74 E-value=0.00036 Score=75.85 Aligned_cols=188 Identities=12% Similarity=0.049 Sum_probs=101.0
Q ss_pred cccccchhHHHHHHHHHhcC----CCC--CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLLRD----DLM--NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~----~~~--~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.+++|.+..++.|.+.+... +.. .....+.+.|+|++|+|||+||+.+++. .... .+.+.++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc---
Confidence 46899999999998877421 000 0123467889999999999999999973 2222 23444432111
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCC-----------hhhHhhhhccCC----CCCCCc
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNES-----------YNDWVELSHPFE----AGAPGS 322 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~w~~~~~~l~----~~~~gs 322 (946)
.. .......+...+...-..++.+|+||++.... ......+...+. ....+.
T Consensus 156 -----------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00 00111112222222223567899999983210 001122222221 112344
Q ss_pred EEEEEcCChh-HHH-hhCC-CCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCC-ChhHHHHHhh
Q 043855 323 KIIVTTRNQG-VAA-IMGT-VPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDG-LPLAAKTLGG 396 (946)
Q Consensus 323 ~iivTtR~~~-v~~-~~~~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~G-lPLai~~~~~ 396 (946)
.||.||.... +.. .... ...+.+...+.++..+++...+..... ... .+..+.|++.+.| .+-.+..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~---~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CLS---EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-Ccc---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5666665532 111 1112 236788888899888888776533211 111 2456778888888 5555655543
No 202
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.71 E-value=6.3e-06 Score=84.69 Aligned_cols=96 Identities=19% Similarity=0.097 Sum_probs=68.7
Q ss_pred EEecCCCCccCCc----cccCCCCCcEEeccCCCcccc---ccchhcCCCCcEEecCCCCchhhchhhhcccC--ccCee
Q 043855 598 FSLCGYEIFELPD----SIGELRHLRYLNLSRTLIEVL---PESVNKLYKLQTLLLEDCDRLKKLCASLGNLI--NLHHL 668 (946)
Q Consensus 598 L~L~~~~~~~lp~----~i~~l~~Lr~L~Ls~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~--~L~~L 668 (946)
++++.|....++. ...++++|+.|+|++|.|..+ |..+..+++|++|+|++| .+..+ ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceE
Confidence 4555554333332 125688999999999998865 466789999999999999 66665 3355555 99999
Q ss_pred ecCCCCCcccccc-------ccCCCCCCcccCce
Q 043855 669 NNSNTDSLEEMPI-------GIGKLTSLQTLCSF 695 (946)
Q Consensus 669 ~l~~~~~~~~~p~-------~i~~l~~L~~L~~~ 695 (946)
++++|.....+|. .+..+++|+.|+..
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 9999984444542 25678888888643
No 203
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.71 E-value=4e-05 Score=74.49 Aligned_cols=122 Identities=20% Similarity=0.149 Sum_probs=64.0
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 043855 189 REIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVA 268 (946)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~ 268 (946)
.....+.+.+++..-.. .....+.|+|++|+||||||+.+++.......+ .++++ +..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcC
Confidence 33444555555543321 234689999999999999999999843212222 22333 344444444444332
Q ss_pred CCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhh--hhccCCCC-CCCcEEEEEcCCh
Q 043855 269 DPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVE--LSHPFEAG-APGSKIIVTTRNQ 331 (946)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~--~~~~l~~~-~~gs~iivTtR~~ 331 (946)
... . .....+ . +.-+|||||++....+.|.. +...+... ..|..||+||...
T Consensus 89 ~~~-~-----~~~~~~----~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GKD-T-----KFLKTV----L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCC-S-----HHHHHH----H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred chH-H-----HHHHHh----c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 211 1 111112 1 45689999997433344432 22222111 2466788888643
No 204
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.70 E-value=3e-05 Score=77.06 Aligned_cols=119 Identities=17% Similarity=0.144 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 043855 192 EKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPN 271 (946)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~ 271 (946)
..+.+.+++..... ......+.|+|++|+||||||+.+++. .......++|++++ ++...+.......
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~-- 104 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQDQ-- 104 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC---C--
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhccc--
Confidence 44555566654321 112267889999999999999999984 33333456666553 3344443322111
Q ss_pred CCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhh--hhc-cCCCC-CCCcEEEEEcCCh
Q 043855 272 VDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVE--LSH-PFEAG-APGSKIIVTTRNQ 331 (946)
Q Consensus 272 ~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~--~~~-~l~~~-~~gs~iivTtR~~ 331 (946)
........+.+ .-+|||||++......|.. +.. .+... ..+.++|+||...
T Consensus 105 ----~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 105 ----TMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ----CCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred ----hHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 11222222221 2399999997654434432 221 11111 2355788888753
No 205
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.65 E-value=0.00087 Score=70.91 Aligned_cols=184 Identities=13% Similarity=0.061 Sum_probs=97.8
Q ss_pred cccccchhHHHHHHHHHhcCC------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDD------LMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.+++|.+..++.+.+++.... .......+.+.|+|++|+||||+|+.+++. .... .+.+..+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 468999999999988774310 000123467889999999999999999973 2222 23344433211
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh-----------hhHhhhh---ccCCCC--CCC
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY-----------NDWVELS---HPFEAG--APG 321 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~w~~~~---~~l~~~--~~g 321 (946)
.. ...........+......++.+|+||++..... .....+. ..++.. +.+
T Consensus 93 -----------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 00 011111122222223345678999999954210 0001111 112211 134
Q ss_pred cEEEEEcCChh-----HHHhhCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChh-HHHHH
Q 043855 322 SKIIVTTRNQG-----VAAIMGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPL-AAKTL 394 (946)
Q Consensus 322 s~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~ 394 (946)
..||.||.... +...+ ...+.+...+.++..+++...+..... ... .+....|++.+.|.+- ++..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGS-PLD---TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSC-CSC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 45666776542 22222 245677777888888888766532211 111 2456678888988875 44444
No 206
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.62 E-value=0.001 Score=74.50 Aligned_cols=188 Identities=19% Similarity=0.170 Sum_probs=99.4
Q ss_pred cccccchhHHHHHHHHHhcC----CC--CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLLRD----DL--MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.+++|.+..++.|.+.+... .. ......+.+.|+|++|+|||+||+.+++... . .-++.++.. +
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-~-----~~~~~v~~~----~ 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-N-----STFFSISSS----D 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-S-----SEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-C-----CCEEEEeHH----H
Confidence 56899999999998876321 10 0012346788999999999999999998420 1 123333322 1
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh-------h----hHhhhhccCCC---CCCCcE
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY-------N----DWVELSHPFEA---GAPGSK 323 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~----~w~~~~~~l~~---~~~gs~ 323 (946)
+ .....+.. ......+. ...-..++.+|+||++..... . ....+...+.. ...+..
T Consensus 204 l----~~~~~g~~---~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 L----VSKWLGES---EKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ------------C---CCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred H----HhhhcchH---HHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 1 11111111 11222222 222235678999999965310 0 11222222221 234556
Q ss_pred EEEEcCChhHH--HhhCCC-CcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCC-hhHHHHHh
Q 043855 324 IIVTTRNQGVA--AIMGTV-PAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGL-PLAAKTLG 395 (946)
Q Consensus 324 iivTtR~~~v~--~~~~~~-~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~~ 395 (946)
||.||...... ...... ..+.+...+.++...+|...+..... .. -......|++.+.|. +-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-SL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-EC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-CC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 77677654221 111222 35778888888888888877633211 11 123456788889884 44454443
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.60 E-value=8.5e-05 Score=90.80 Aligned_cols=155 Identities=12% Similarity=0.125 Sum_probs=80.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc---ccccC-C-ceEEEEeCCCCCHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDR---VRDHF-D-LKAWTCVSDDFDVVRL 258 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~F-~-~~~wv~~~~~~~~~~~ 258 (946)
..++||+++++++++.|.... ...+.|+|++|+||||+|+.+++... +.... . .+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 458999999999999996532 23468999999999999999997421 11111 1 223333322100
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHhC-CceEEEEEcCCCCCCh-----hhHh---hhhccCCCCCCCcEEEEEcC
Q 043855 259 IKVILRSFVADPNVDNRDLILLQLQLKKQLS-GKKFLFVLDDVWNESY-----NDWV---ELSHPFEAGAPGSKIIVTTR 329 (946)
Q Consensus 259 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~-----~~w~---~~~~~l~~~~~gs~iivTtR 329 (946)
+... .......+...+...-. +++.+|+||++..... ..|+ .+...+.. .+..+|.+|.
T Consensus 240 ---------g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 240 ---------GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred ---------cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 0000 01111222222333323 3689999999965320 0011 12222211 2345666665
Q ss_pred ChhHHH------hhCCCCcEeCCCCChHHHHHHHHHh
Q 043855 330 NQGVAA------IMGTVPAYQLKKLSDHDCLALFARH 360 (946)
Q Consensus 330 ~~~v~~------~~~~~~~~~l~~L~~~e~~~Lf~~~ 360 (946)
...... .......+.+.+++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 443311 1112346899999999999988643
No 208
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.57 E-value=0.00096 Score=70.58 Aligned_cols=181 Identities=13% Similarity=0.127 Sum_probs=97.5
Q ss_pred cccccchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLRDD-------LMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
.+++|.+..++.|.+++...- ..+-...+.+.|+|++|+|||+||+.+++. .... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----hH
Confidence 468999998888887764310 000123467899999999999999999984 2222 22222 22
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh--------------hhHhhhhccCC--CCCC
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY--------------NDWVELSHPFE--AGAP 320 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~w~~~~~~l~--~~~~ 320 (946)
++. ....+... . .+...+.......+.+|+||++..... .....+...+. ....
T Consensus 84 ~l~----~~~~g~~~---~---~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 84 ELL----TMWFGESE---A---NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHH----HHHHTTCT---T---HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHH----hhhcCchH---H---HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 222 22222221 1 122233333345679999999953110 00122222221 1123
Q ss_pred CcEEEEEcCChhHH-Hh-hC---CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhH
Q 043855 321 GSKIIVTTRNQGVA-AI-MG---TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLA 390 (946)
Q Consensus 321 gs~iivTtR~~~v~-~~-~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLa 390 (946)
+..||.||...... .. .. -...+.+...+.++-.+++....-.... .....+ ..+++.+.|.|=+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCHH
Confidence 55677777655322 11 11 1246888999999888888776533211 111222 3456667777643
No 209
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.56 E-value=3.4e-05 Score=71.72 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=33.5
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 578999999888887754221 1234779999999999999999874
No 210
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.51 E-value=0.00027 Score=73.47 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=33.9
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++|.+..+.++.+.+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 478999999888877754321 2245779999999999999999974
No 211
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.50 E-value=0.0032 Score=67.60 Aligned_cols=178 Identities=17% Similarity=0.144 Sum_probs=92.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
..++|.+..++.+...+..... .......+.|+|++|+||||||+.+++. ....|. ....+-.....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~---~~sg~~~~~~~------- 91 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH---VTSGPVLVKQG------- 91 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE---EEETTTCCSHH-------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE---EEechHhcCHH-------
Confidence 3578888777777666643210 0123467899999999999999999983 222211 11111111111
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCC--------C----------CCcEEE
Q 043855 264 RSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAG--------A----------PGSKII 325 (946)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~--------~----------~gs~ii 325 (946)
.+...+ ..+. ++-++++|++........+.+...+... + ....++
T Consensus 92 ---------------~l~~~~-~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 92 ---------------DMAAIL-TSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ---------------HHHHHH-HHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred ---------------HHHHHH-HHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 111111 1122 3346777887544322222222111100 0 011222
Q ss_pred -EEcCChhHHHhh-CCC-CcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHHh
Q 043855 326 -VTTRNQGVAAIM-GTV-PAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTLG 395 (946)
Q Consensus 326 -vTtR~~~v~~~~-~~~-~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~~ 395 (946)
.|++...+.... ... ..+.+++.+.++..+++.+.+-.... . .-.+.+..|++.++|.|-.+..+-
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~---~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-E---IEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-C---BCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-C---cCHHHHHHHHHhcCCChHHHHHHH
Confidence 344443322111 112 25789999999999999876532111 1 123568889999999996554433
No 212
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.50 E-value=0.00032 Score=74.25 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=36.9
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 3589999999999888765321 2245779999999999999999973
No 213
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.49 E-value=0.00031 Score=75.02 Aligned_cols=121 Identities=13% Similarity=0.139 Sum_probs=65.2
Q ss_pred ccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHH
Q 043855 185 HVYGREIEKKEIVELLLRDDL---MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKV 261 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 261 (946)
.++|.+..++.+...+..... ........+.|+|++|+|||++|+.++.. ....-...+.+.++...+.. ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 478999998888887764311 01123468999999999999999999973 22211234555555432221 1111
Q ss_pred HHHHhcCCCCC-CcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhcc
Q 043855 262 ILRSFVADPNV-DNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHP 314 (946)
Q Consensus 262 il~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~ 314 (946)
+ ++..... .......+...+. ....-+++||++...+......+...
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~ 142 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQM 142 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHH
T ss_pred h---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHH
Confidence 1 1111110 0000012222222 13346999999977665555554443
No 214
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.46 E-value=0.0012 Score=72.75 Aligned_cols=187 Identities=14% Similarity=0.112 Sum_probs=97.9
Q ss_pred cccccchhHHHHHHHHHhcCC----C--CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDD----L--MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~----~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.+++|.+..++.|.+++.... . ......+.+.|+|++|+|||+||+.+++. .... .+.++++.-.+ .
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~--~ 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTS--K 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhc--c
Confidence 569999999999988773210 0 00122467899999999999999999873 2222 23333332111 0
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCC-----------hhhHhhhhccC---CC-CCCCc
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNES-----------YNDWVELSHPF---EA-GAPGS 322 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~w~~~~~~l---~~-~~~gs 322 (946)
. .......+...+...-..++.+|+||++.... ......+...+ .. .....
T Consensus 188 --------~------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 --------Y------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred --------c------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 0 00011112222222223456799999995320 00111111111 11 12234
Q ss_pred EEEEEcCChh-HH-HhhCCC-CcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCChh-HHHHHh
Q 043855 323 KIIVTTRNQG-VA-AIMGTV-PAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLPL-AAKTLG 395 (946)
Q Consensus 323 ~iivTtR~~~-v~-~~~~~~-~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlPL-ai~~~~ 395 (946)
.||.||.... +. ...... ..+.+...+.++..+++...+..... .. ..+....|++.+.|..- +|..+.
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~l---~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-PL---TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-CS---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5665665432 11 111222 35788889999999999877643221 11 12456788888888544 554443
No 215
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.43 E-value=0.00054 Score=77.21 Aligned_cols=99 Identities=10% Similarity=0.042 Sum_probs=60.8
Q ss_pred EEEEEcCCCCCChhhHhhhhccCCCCCCCcEEE-EE---------cC----ChhH-HHhhCCCCcEeCCCCChHHHHHHH
Q 043855 293 FLFVLDDVWNESYNDWVELSHPFEAGAPGSKII-VT---------TR----NQGV-AAIMGTVPAYQLKKLSDHDCLALF 357 (946)
Q Consensus 293 ~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~ii-vT---------tR----~~~v-~~~~~~~~~~~l~~L~~~e~~~Lf 357 (946)
-++++|++...+.+.+..+...+...... .+| .| |. ...+ .........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999887767777777766654334 344 34 32 1111 122234456899999999999999
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHHhc-CCChhHHHHHhh
Q 043855 358 ARHSLGTRDFSSHKSLEKIGREIVTKC-DGLPLAAKTLGG 396 (946)
Q Consensus 358 ~~~a~~~~~~~~~~~l~~~~~~i~~~~-~GlPLai~~~~~ 396 (946)
...+-.... .. -.+....|++.+ +|.|-.+..+..
T Consensus 376 ~~~~~~~~~-~~---~~~~~~~i~~~a~~g~~r~a~~ll~ 411 (456)
T 2c9o_A 376 KIRAQTEGI-NI---SEEALNHLGEIGTKTTLRYSVQLLT 411 (456)
T ss_dssp HHHHHHHTC-CB---CHHHHHHHHHHHHHSCHHHHHHTHH
T ss_pred HHHHHHhCC-CC---CHHHHHHHHHHccCCCHHHHHHHHH
Confidence 876531111 11 124566778887 788876555543
No 216
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.41 E-value=0.00093 Score=80.77 Aligned_cols=156 Identities=18% Similarity=0.221 Sum_probs=87.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccc---ccc-cCCceEEE-EeCCCCCHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDR---VRD-HFDLKAWT-CVSDDFDVVRL 258 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~-~F~~~~wv-~~~~~~~~~~~ 258 (946)
..++||+.+++++++.|... ...-+.|+|++|+||||+|+.+++... +.. .....+|. ..+. +
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H
Confidence 45899999999999999653 234568999999999999999987321 110 11223321 1111 0
Q ss_pred HHHHHHHhcCCCCCCcccHH-HHHHHHHHHhCCceEEEEEcCCCCC--------ChhhHhhhhccCCCCCCCcEEEEEcC
Q 043855 259 IKVILRSFVADPNVDNRDLI-LLQLQLKKQLSGKKFLFVLDDVWNE--------SYNDWVELSHPFEAGAPGSKIIVTTR 329 (946)
Q Consensus 259 ~~~il~~l~~~~~~~~~~~~-~~~~~l~~~l~~kr~LlVlDdv~~~--------~~~~w~~~~~~l~~~~~gs~iivTtR 329 (946)
+.+.. .....+ .+...+...-..++.+|+|||+... ...+...+...+... .+.++|.+|.
T Consensus 254 -------~~~~~--~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~ 323 (758)
T 1r6b_X 254 -------LAGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTT 323 (758)
T ss_dssp --------CCCC--CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEEC
T ss_pred -------hcccc--ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeC
Confidence 00011 111222 2233333333446799999999643 111222222232222 3456777776
Q ss_pred ChhHHHhhC-------CCCcEeCCCCChHHHHHHHHHhh
Q 043855 330 NQGVAAIMG-------TVPAYQLKKLSDHDCLALFARHS 361 (946)
Q Consensus 330 ~~~v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~a 361 (946)
..+...... ....+.+.+.+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 544322211 12358899999999888887543
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.37 E-value=0.00066 Score=76.57 Aligned_cols=185 Identities=11% Similarity=0.078 Sum_probs=100.1
Q ss_pred cccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDL-------MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
.+++|.+..+++|.+++...-. .+....+-|.|+|++|+|||++|+.+++. ....| +.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEch------
Confidence 4589999999999887753200 00123456889999999999999999873 32222 333321
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCC--------C---hhhHhhhhccCC--CCCCCcE
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNE--------S---YNDWVELSHPFE--AGAPGSK 323 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~---~~~w~~~~~~l~--~~~~gs~ 323 (946)
+ +...+ .......+...+.....+++.+|+||++... . ......+...+. ....+.+
T Consensus 273 ~----l~~~~------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 E----IMSKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp H----HHTSC------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred H----hhhhh------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 1 11111 1122223334444455567889999998321 0 001112222221 1123456
Q ss_pred EEEEcCChhH-HHhh----CCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCC-hhHHHHH
Q 043855 324 IIVTTRNQGV-AAIM----GTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGL-PLAAKTL 394 (946)
Q Consensus 324 iivTtR~~~v-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~Gl-PLai~~~ 394 (946)
||.||..... ...+ .-...+.+...+.++-.+++..++..... ..... ...+++.+.|. +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHHH
Confidence 6667765422 1111 11235889999999999999877532211 11112 24566677774 4444443
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.30 E-value=0.00063 Score=82.14 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=80.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc---cccccCCceEEEEeCCCCCHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDD---RVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~---~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
..++||+.++++++..|.... ..-+.++|++|+|||++|+.+++.. .+.......-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 459999999999999996542 2346799999999999999998741 0110100111111111
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCChhHHHhh---
Q 043855 261 VILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQGVAAIM--- 337 (946)
Q Consensus 261 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~~v~~~~--- 337 (946)
-....+. .... +...+......++.+|++|.. .+.-..+...+.. ...++|.||.........
T Consensus 245 --g~~~~G~---~e~~---l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 --GTKYRGE---FEDR---LKKVMDEIRQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp -------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTC
T ss_pred --cccccch---HHHH---HHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhcc
Confidence 0000000 1111 222333333467889999921 1122223333332 345677766655421111
Q ss_pred ----CCCCcEeCCCCChHHHHHHHHHhh
Q 043855 338 ----GTVPAYQLKKLSDHDCLALFARHS 361 (946)
Q Consensus 338 ----~~~~~~~l~~L~~~e~~~Lf~~~a 361 (946)
.....+.+...+.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 123568999999999999998654
No 219
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.002 Score=69.55 Aligned_cols=179 Identities=17% Similarity=0.134 Sum_probs=96.6
Q ss_pred cccccchhHHHHHHHHHhc----CCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLR----DDL---MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
.++.|-++.+++|.+.+.- ++. .+-..++-|.++|++|.|||.||+++++. ....| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc--
Confidence 5688999988888765532 100 01234566889999999999999999983 33333 3444433211
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh--------hh------HhhhhccCC--CCCC
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY--------ND------WVELSHPFE--AGAP 320 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------~~------w~~~~~~l~--~~~~ 320 (946)
.. .......+...+...-...+++|+||+++.... .. ...+...+. ....
T Consensus 221 ------------k~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 ------------KY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp ------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred ------------cc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 00 111122222223333345689999999864210 00 111111111 1234
Q ss_pred CcEEEEEcCChhHH---Hh--hCCCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 043855 321 GSKIIVTTRNQGVA---AI--MGTVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLP 388 (946)
Q Consensus 321 gs~iivTtR~~~v~---~~--~~~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlP 388 (946)
+..||.||...+.. -. ..-...+.+..-+.++-.++|..+.-... ....-+ ...|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMN-LTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSB-CCSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHCCCCC
Confidence 44566777655331 11 12345788888888888888876653221 111122 346777887753
No 220
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.19 E-value=0.0019 Score=66.58 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=92.0
Q ss_pred cccccchhHHHHHHHHH---hcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELL---LRDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L---~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.+++|.+..++++.+.+ ...... +....+-+.|+|++|+||||||+.+++. ....| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 46899988877766543 221100 0112345789999999999999999973 22222 3333222110
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh--------------hhHhhhhccCC--CCCCC
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY--------------NDWVELSHPFE--AGAPG 321 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~w~~~~~~l~--~~~~g 321 (946)
.. .......+...+.......+.++++|++..... .....+...+. ....+
T Consensus 84 -------~~------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 -------MF------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp -------SC------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred -------Hh------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 00 111122333344444455678999999832100 00111111111 11234
Q ss_pred cEEEEEcCChh-HHHhh-C---CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCC-ChhHHH
Q 043855 322 SKIIVTTRNQG-VAAIM-G---TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDG-LPLAAK 392 (946)
Q Consensus 322 s~iivTtR~~~-v~~~~-~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~G-lPLai~ 392 (946)
..||.||...+ +...+ . -...+.+...+.++-.+++....-... ...... ...+++.+.| .+--+.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCcccc----HHHHHHHcCCCCHHHHH
Confidence 56777776553 21111 1 123577777788887788776543211 111111 2356777777 554444
No 221
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.18 E-value=0.0019 Score=71.38 Aligned_cols=285 Identities=9% Similarity=0.067 Sum_probs=142.3
Q ss_pred hcccCceeEEEecCCC---CccCC-ccccCCCCCcEEeccCCCcccccc-chhcCCCCcEEecCCCCchhhchh-hhccc
Q 043855 589 LLRLQRLRVFSLCGYE---IFELP-DSIGELRHLRYLNLSRTLIEVLPE-SVNKLYKLQTLLLEDCDRLKKLCA-SLGNL 662 (946)
Q Consensus 589 l~~~~~Lr~L~L~~~~---~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L 662 (946)
+.+|.+|+.+.+..+. ++.+. .+|.++.+|+.+.+..+ ++.++. .+..+.+|+.+.+..+ +..++. .+..+
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c 159 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYC 159 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce--eeeecccceecc
Confidence 3488999999998763 45554 46778888988887754 555543 4778899999998754 444443 46778
Q ss_pred CccCeeecCCCCCccccccccCCCCCCcccCceecCC-CCCCChhccccccccCCeeEEecCCCCCCcccc---------
Q 043855 663 INLHHLNNSNTDSLEEMPIGIGKLTSLQTLCSFVVGK-DSGSGLRELKLLKHLHGTLNISKLENVKCIVDA--------- 732 (946)
Q Consensus 663 ~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~-~~~~~~~~L~~L~~L~~~L~i~~l~~~~~~~~~--------- 732 (946)
.+|+.+.+..+ +..+........+|..+.+..... .....+.....+. ........ .......
T Consensus 160 ~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~----~~~~~~~~-~~~~~~~~~~~~~~~~ 232 (394)
T 4gt6_A 160 YSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALS----TITSDSES-YPAIDNVLYEKSANGD 232 (394)
T ss_dssp TTCCEEECCTT--CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCC----EEEECCSS-SCBSSSCEEEECTTSC
T ss_pred cccccccccce--eeEeccccccccceeEEEECCcccccccchhhhccccc----eecccccc-cccccceeeccccccc
Confidence 88888888654 444544322334555543211100 0011111111111 11110000 0000000
Q ss_pred -ccccCCcccccCceEEEecCCCCCCCchhhhhHHhHhccCCCCCCcceEEEeecCCCCCCcCcCCCCCCCccEEEEecC
Q 043855 733 -EEAQLDGKKNLKVLLLRWTCSTDDSSLREAETEKGVLTMLKPHKNLEQICISGYGGTEFPTWLGDFSFSNLVTLKFEDC 811 (946)
Q Consensus 733 -~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~ 811 (946)
..........+..+.+... .. ......+..+.+|+.+.+.... ..+..... ..+++|+.+.+...
T Consensus 233 ~~~~~~~~~~~~~~~~ip~~-v~-----------~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF-~~c~~L~~i~l~~~ 298 (394)
T 4gt6_A 233 YALIRYPSQREDPAFKIPNG-VA-----------RIETHAFDSCAYLASVKMPDSV-VSIGTGAF-MNCPALQDIEFSSR 298 (394)
T ss_dssp EEEEECCTTCCCSEEECCTT-EE-----------EECTTTTTTCSSCCEEECCTTC-CEECTTTT-TTCTTCCEEECCTT
T ss_pred ccccccccccccceEEcCCc-ce-----------EcccceeeecccccEEeccccc-ceecCccc-ccccccccccCCCc
Confidence 0000111112222222110 00 0011245567778887775432 22332222 15678888888532
Q ss_pred CCCCCCC--CCCCCCCCceeeeccccCceeeCccccCCCCCCcCCCcceeeccCCcccccccccCCCCCCCCCCcccEee
Q 043855 812 GMCTSLP--SVGQLPSLKHLVVRRMSRVKRLGSEFYGNDCPIPFLCLETLCFEDMREWEDWIPCGSSQGIELFPNLREFR 889 (946)
Q Consensus 812 ~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~p~L~~L~ 889 (946)
...++ .+..+++|+.+.|.. .++.++...+. .+.+|+.+.|-. ++..+. ......+++|+.++
T Consensus 299 --i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~-----~C~~L~~i~ip~--sv~~I~----~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 299 --ITELPESVFAGCISLKSIDIPE--GITQILDDAFA-----GCEQLERIAIPS--SVTKIP----ESAFSNCTALNNIE 363 (394)
T ss_dssp --CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT-----TCTTCCEEEECT--TCCBCC----GGGGTTCTTCCEEE
T ss_pred --ccccCceeecCCCCcCEEEeCC--cccEehHhHhh-----CCCCCCEEEECc--ccCEEh----HhHhhCCCCCCEEE
Confidence 33444 477788888888864 46677655433 377888888853 222221 11145678888888
Q ss_pred ecCCcCccccCCCCCCCCCEEEEc
Q 043855 890 ILRCPKLQGTLPERLPELKMFVIQ 913 (946)
Q Consensus 890 l~~c~~L~~~lp~~l~~L~~L~i~ 913 (946)
+.++....+.+ ....+|+.+.+.
T Consensus 364 ~~~~~~~~~~~-~~~~~L~~i~i~ 386 (394)
T 4gt6_A 364 YSGSRSQWNAI-STDSGLQNLPVA 386 (394)
T ss_dssp ESSCHHHHHTC-BCCCCC------
T ss_pred ECCceeehhhh-hccCCCCEEEeC
Confidence 87753211111 234566666653
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.18 E-value=0.00029 Score=85.02 Aligned_cols=155 Identities=12% Similarity=0.128 Sum_probs=85.9
Q ss_pred cccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
..++|.+..++.+...+.....+ .......+.++|++|+|||++|+.+++. ....-...+.++++.-.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc-----
Confidence 46899999999988887643211 1123347999999999999999999973 2121223455555442211
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCC-----------CCCCcEEEEEcC
Q 043855 261 VILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEA-----------GAPGSKIIVTTR 329 (946)
Q Consensus 261 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~-----------~~~gs~iivTtR 329 (946)
.. . ....+...++. ...-+|+||++..........+...+.. .....+||+||.
T Consensus 564 ---------~~-~--~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 564 ---------HS-T--SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ---------CC-C--C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ---------cc-c--ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 00 0 01111111211 2334899999977665444444433321 113457888887
Q ss_pred C-----hh----HHHhh-----CCC-CcEeCCCCChHHHHHHHHHh
Q 043855 330 N-----QG----VAAIM-----GTV-PAYQLKKLSDHDCLALFARH 360 (946)
Q Consensus 330 ~-----~~----v~~~~-----~~~-~~~~l~~L~~~e~~~Lf~~~ 360 (946)
. .. +...+ ... ..+.+.++++++..+++...
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 3 11 11111 122 46888888888887777653
No 223
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.18 E-value=0.00071 Score=72.04 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=37.4
Q ss_pred cccccchhHHHHHHHHHhcC--CCC------CCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRD--DLM------NDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~--~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..++|.+..++.+...+... ... .......+.|+|++|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999998877541 000 0012356789999999999999999973
No 224
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.18 E-value=0.00015 Score=67.70 Aligned_cols=39 Identities=18% Similarity=0.071 Sum_probs=27.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSD 251 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 251 (946)
...+.|+|+.|+|||||++.++...... .+ .++++...+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 3588999999999999999999843221 11 255665543
No 225
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.07 E-value=0.00019 Score=74.80 Aligned_cols=51 Identities=29% Similarity=0.262 Sum_probs=34.8
Q ss_pred cccccchhHHHHHHHHHhcCCCC------CCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDDLM------NDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+++|.+..++.+.+.+..-..+ +....+-+.|+|++|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 46899998888777655310000 0011233779999999999999999984
No 226
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.07 E-value=0.013 Score=64.14 Aligned_cols=55 Identities=5% Similarity=0.070 Sum_probs=27.9
Q ss_pred ccCceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCccccccchhcCCCCcEEecCC
Q 043855 591 RLQRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVLPESVNKLYKLQTLLLED 648 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~ 648 (946)
+|.+|+.++|..+ ++.++ .+|.++ .|..+.+..+ ++.++.......+|+.+.+..
T Consensus 67 ~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 67 SCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEECCT
T ss_pred CCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCcccccCCC
Confidence 5666666666533 44443 344444 4555555432 444444332334666666654
No 227
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.003 Score=69.38 Aligned_cols=179 Identities=16% Similarity=0.171 Sum_probs=96.1
Q ss_pred cccccchhHHHHHHHHHhcC----CC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLRD----DL---MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~----~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
.++.|-++.+++|.+.+.-+ +. .+-..++-|.++|++|.|||+||+++++. ....| +.|..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc--
Confidence 56889999888887665321 00 01234577889999999999999999984 33332 3344433211
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh---------h-h----HhhhhccCC--CCCC
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY---------N-D----WVELSHPFE--AGAP 320 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~---------~-~----w~~~~~~l~--~~~~ 320 (946)
.. .......+...+...-...+++|++|+++.... . . ...+...+. ....
T Consensus 254 ------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 ------------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp ------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred ------------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 00 111112222223333345789999999964210 0 0 111222211 2224
Q ss_pred CcEEEEEcCChhHHHh-h-CC---CCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 043855 321 GSKIIVTTRNQGVAAI-M-GT---VPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLP 388 (946)
Q Consensus 321 gs~iivTtR~~~v~~~-~-~~---~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlP 388 (946)
+..||.||...+.... + .. ...+.+..-+.++-.++|..+.-.-.. ....+ ...|++.+.|+-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 5567778876543221 1 11 235777777777777888766533211 11112 345777887753
No 228
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.04 E-value=0.0034 Score=70.10 Aligned_cols=179 Identities=14% Similarity=0.111 Sum_probs=94.6
Q ss_pred cccccchhHHHHHHHHHhc---CC---CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLLR---DD---LMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~---~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.+++|.++.++++.+.+.. .. ..+..-.+-+.|+|++|+|||+||+.+++. ....| +.+++++-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 4689999887777665432 10 000112234789999999999999999983 22222 33443332110
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh----------h----hHhhhhccCC--CCCCC
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY----------N----DWVELSHPFE--AGAPG 321 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------~----~w~~~~~~l~--~~~~g 321 (946)
+ ...........+.......+.+|+||++..... . ....+...+. ....+
T Consensus 89 --------~------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 --------F------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp --------C------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred --------H------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 001112223334444456789999999954211 0 1122222111 11245
Q ss_pred cEEEEEcCChhHHH--hhC--C-CCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 043855 322 SKIIVTTRNQGVAA--IMG--T-VPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLP 388 (946)
Q Consensus 322 s~iivTtR~~~v~~--~~~--~-~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlP 388 (946)
..||.||...+... ... . ...+.+...+.++-.+++..++-...- ..... ...|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 56777777654322 111 1 236788888877777888766532211 11111 334778888876
No 229
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0025 Score=69.85 Aligned_cols=53 Identities=30% Similarity=0.280 Sum_probs=38.7
Q ss_pred cccccccchhHHHHHHHHHhcC----C---CCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 182 NEAHVYGREIEKKEIVELLLRD----D---LMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 182 ~~~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.=.++.|-++.+++|.+.+.-. + ..+-...+-|.++|++|.|||+||+++++.
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3357899999998887765321 0 001234567889999999999999999984
No 230
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.00 E-value=0.0015 Score=75.01 Aligned_cols=51 Identities=29% Similarity=0.333 Sum_probs=36.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+++|-+.-++.+.+.+.-..........++.|+|++|+||||||+.++..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 568898888777765443211001124568999999999999999999973
No 231
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.97 E-value=0.032 Score=60.97 Aligned_cols=78 Identities=12% Similarity=0.133 Sum_probs=52.9
Q ss_pred ccCceeEEEecCCCCccCC-ccccCCCCCcEEeccCCCccccccc-hhcCCCCcEEecCCCCchhhchhhhcccCccCee
Q 043855 591 RLQRLRVFSLCGYEIFELP-DSIGELRHLRYLNLSRTLIEVLPES-VNKLYKLQTLLLEDCDRLKKLCASLGNLINLHHL 668 (946)
Q Consensus 591 ~~~~Lr~L~L~~~~~~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 668 (946)
...+|+.+.+.. .++.++ .+|.++.+|+.++|..+ ++.++.. |.++ +|+.+.+..+ +..++...-...+|+.+
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i 118 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDF 118 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEE
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCcccc
Confidence 445677777753 456665 46899999999999754 6777554 6665 6888877653 56665543344578888
Q ss_pred ecCCC
Q 043855 669 NNSNT 673 (946)
Q Consensus 669 ~l~~~ 673 (946)
.+..+
T Consensus 119 ~lp~~ 123 (379)
T 4h09_A 119 EFPGA 123 (379)
T ss_dssp ECCTT
T ss_pred cCCCc
Confidence 88754
No 232
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0088 Score=65.48 Aligned_cols=178 Identities=15% Similarity=0.113 Sum_probs=94.8
Q ss_pred cccccchhHHHHHHHHHhc----CCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLR----DDL---MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
.++.|-++.+++|.+.+.- ++. .+-..++-|.++|++|.|||+||+++++. ....| +.|..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~--- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELV--- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhh---
Confidence 4688999988888765421 100 01234577889999999999999999983 33332 334433211
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh--------hh------HhhhhccCC--CCCC
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY--------ND------WVELSHPFE--AGAP 320 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------~~------w~~~~~~l~--~~~~ 320 (946)
... .......+...+...-...+++|++|++..... .. ...+...+. ....
T Consensus 281 -----------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 281 -----------QKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -----------CCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -----------ccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 000 111122222233333345789999999864210 00 011111111 1223
Q ss_pred CcEEEEEcCChhHHH--hh--C-CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCC
Q 043855 321 GSKIIVTTRNQGVAA--IM--G-TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGL 387 (946)
Q Consensus 321 gs~iivTtR~~~v~~--~~--~-~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~Gl 387 (946)
+..||.||...+... .. + -...+.+...+.++-.++|..+.-.-. ....-+ ...|++.|.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvd----l~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIR----WELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCC----HHHHHHHCCCC
Confidence 445666776543211 11 1 234678888888888888877653221 111122 34577788775
No 233
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.92 E-value=0.003 Score=63.24 Aligned_cols=87 Identities=21% Similarity=0.086 Sum_probs=53.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcC-----------CCCCCcccHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVA-----------DPNVDNRDLI 278 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~-----------~~~~~~~~~~ 278 (946)
...++.|+|++|+||||||..++. . .-..++|++....++..++.. +.+..+. .......+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 446999999999999999999987 1 123578888777666655433 3332211 1111122223
Q ss_pred HHHHHHHHHhCCceEEEEEcCCCC
Q 043855 279 LLQLQLKKQLSGKKFLFVLDDVWN 302 (946)
Q Consensus 279 ~~~~~l~~~l~~kr~LlVlDdv~~ 302 (946)
+....++..+..+.-+||+|.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344455555544577899998743
No 234
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.72 E-value=0.00074 Score=71.49 Aligned_cols=56 Identities=13% Similarity=0.002 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEe
Q 043855 190 EIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCV 249 (946)
Q Consensus 190 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 249 (946)
....+.+.+++..... .....+.|+|++|+|||+||+.+++.... ..-..++++++
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 3344455566654321 12467889999999999999999984220 22223455554
No 235
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.63 E-value=0.00095 Score=69.48 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=44.6
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEe--CCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCV--SDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQL 288 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 288 (946)
.+++.|+|++|+||||||.+++.. . -..++|++. .+..+. ...+.+.....+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~--G~~VlyIs~~~eE~v~~-----------------~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---L--GGKDKYATVRFGEPLSG-----------------YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---H--HTTSCCEEEEBSCSSTT-----------------CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---C--CCCEEEEEecchhhhhh-----------------hhcCHHHHHHHHHHHH
Confidence 367889999999999999999874 1 123456776 332111 0133445555555555
Q ss_pred CCceEEEEEcCCCC
Q 043855 289 SGKKFLFVLDDVWN 302 (946)
Q Consensus 289 ~~kr~LlVlDdv~~ 302 (946)
...+ +||+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 5555 999999953
No 236
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.60 E-value=0.002 Score=69.25 Aligned_cols=152 Identities=15% Similarity=0.115 Sum_probs=83.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVIL 263 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il 263 (946)
..++|+++.++.+...+... .-+.++|++|+|||+||+.+.+. ....| ..+.+.......++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g--- 90 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIG--- 90 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHE---
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCC---
Confidence 35889999999888887653 35789999999999999999873 32222 2344433333333211
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHHhCC--ceEEEEEcCCCCCChhhHhhhhccCCC-----------CCCCcEEEEEcCC
Q 043855 264 RSFVADPNVDNRDLILLQLQLKKQLSG--KKFLFVLDDVWNESYNDWVELSHPFEA-----------GAPGSKIIVTTRN 330 (946)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~w~~~~~~l~~-----------~~~gs~iivTtR~ 330 (946)
............ .-.+ ...++++|++..........+...+.. ......|+.|+..
T Consensus 91 -~~~~~~~~~~~~----------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 91 -TMIYNQHKGNFE----------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp -EEEEETTTTEEE----------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred -ceeecCCCCceE----------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 110000000000 0000 125899999976654443333322211 1223455556552
Q ss_pred hh------H-HHhhCCCC-cEeCCCCChHHHHHHHHHhhc
Q 043855 331 QG------V-AAIMGTVP-AYQLKKLSDHDCLALFARHSL 362 (946)
Q Consensus 331 ~~------v-~~~~~~~~-~~~l~~L~~~e~~~Lf~~~a~ 362 (946)
.+ + ........ .+.+.+.+.++-.+++.+.+.
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 21 1 11122223 488899999999888887654
No 237
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.60 E-value=0.0031 Score=76.18 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=37.9
Q ss_pred cccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..++|.+..++.+...+.....+ .......+.++|++|+|||++|+.+++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 45889999998888777532110 1123457899999999999999999973
No 238
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.54 E-value=0.0043 Score=75.71 Aligned_cols=137 Identities=14% Similarity=0.186 Sum_probs=71.7
Q ss_pred cccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHH
Q 043855 184 AHVYGREIEKKEIVELLLRDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIK 260 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 260 (946)
..++|.+..++.+...+.....+ .......+.|+|++|+|||++|+.+++. ....-...+.++++.......
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~~--- 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA--- 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSGG---
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchhH---
Confidence 35899999999888877543210 1123468899999999999999999973 211111234455444322100
Q ss_pred HHHHHhcCCCCC--CcccHHHHHHHHHHHhCCceEEEEEcCCCCCChhhHhhhhccCCCCC-----------CCcEEEEE
Q 043855 261 VILRSFVADPNV--DNRDLILLQLQLKKQLSGKKFLFVLDDVWNESYNDWVELSHPFEAGA-----------PGSKIIVT 327 (946)
Q Consensus 261 ~il~~l~~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~-----------~gs~iivT 327 (946)
...+.+.... .......+...++. ...-+|+||++...+.+....+...+..+. .+..||+|
T Consensus 633 --~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 633 --VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp --GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred --HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 0111111100 00001122222222 234689999997766555555554443221 24457777
Q ss_pred cCC
Q 043855 328 TRN 330 (946)
Q Consensus 328 tR~ 330 (946)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 764
No 239
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.36 E-value=0.007 Score=63.55 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999984
No 240
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.24 E-value=0.0067 Score=66.39 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+.++|++|+|||++|+.+++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999973
No 241
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.14 E-value=0.027 Score=66.68 Aligned_cols=179 Identities=12% Similarity=0.108 Sum_probs=97.4
Q ss_pred cccccchhHHHHHHHHHh----cCCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLL----RDDL---MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
.++.|-++.+++|.+++. .++. .+-..++-|.++|++|.|||+||+++++. ...+| +.|+.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH-----
Confidence 457888888887776653 2211 12234577899999999999999999984 33332 3343321
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh------hh-H----hhhhccCC--CCCCCcE
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY------ND-W----VELSHPFE--AGAPGSK 323 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~------~~-w----~~~~~~l~--~~~~gs~ 323 (946)
+. ... .......+...+....+..+.+|+||+++.... .. - ..+...+. ....+..
T Consensus 274 -----l~----sk~--~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 -----IM----SKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -----HH----SSC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -----hh----ccc--chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 11 111 122233344445555567799999999854210 00 0 11111111 1113344
Q ss_pred EEEEcCChhHH-HhhC----CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 043855 324 IIVTTRNQGVA-AIMG----TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLP 388 (946)
Q Consensus 324 iivTtR~~~v~-~~~~----~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlP 388 (946)
||.||...+.. ..+. -...+.+...+.++-.++|..+.-.... ....+ ...|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCC
Confidence 56666654322 1111 1235788888888888888876432111 11122 346778888764
No 242
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.12 E-value=0.0099 Score=63.55 Aligned_cols=86 Identities=20% Similarity=0.133 Sum_probs=55.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CcccHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV----DNRDLILLQLQLK 285 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 285 (946)
..+++.|+|++|+||||||.+++..... .=..++|++....++.. .+++++..... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4579999999999999999999874222 11347888888777654 34444433211 2234555555555
Q ss_pred HHhC-CceEEEEEcCCCC
Q 043855 286 KQLS-GKKFLFVLDDVWN 302 (946)
Q Consensus 286 ~~l~-~kr~LlVlDdv~~ 302 (946)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 4443 4556899999843
No 243
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.021 Score=61.84 Aligned_cols=178 Identities=18% Similarity=0.126 Sum_probs=92.5
Q ss_pred cccccchhHHHHHHHHHhc----CCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLR----DDL---MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
.++.|-++.+++|.+.+.- ++. .+-...+-|.++|++|.|||.||+++++. ....| +.+..++-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~--- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELI--- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGC---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhh---
Confidence 5688999988888775532 110 01234567889999999999999999984 33332 333332211
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh----------hh----HhhhhccCC--CCCC
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY----------ND----WVELSHPFE--AGAP 320 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----------~~----w~~~~~~l~--~~~~ 320 (946)
... .......+...+...-...+++|++|+++.... .. ...+...+. ....
T Consensus 254 -----------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 254 -----------QKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp -----------CSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred -----------hcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 000 111112222222222335689999999853210 00 111111111 1223
Q ss_pred CcEEEEEcCChhHHHh-h-C---CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCC
Q 043855 321 GSKIIVTTRNQGVAAI-M-G---TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGL 387 (946)
Q Consensus 321 gs~iivTtR~~~v~~~-~-~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~Gl 387 (946)
+..||.||...+.... + . -...+.+..-+.++-.++|..+.-.-. ....-+ ...|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCC----HHHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCC
Confidence 4456677766543221 1 1 123467777777777888876653221 111222 34566777765
No 244
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.00 E-value=0.018 Score=61.82 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=40.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRD----HFDLKAWTCVSDDFDVVRLIKVILRSFV 267 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~ 267 (946)
...++.|+|.+|+||||||.+++....... .-..++|++....++..++. +++..++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g 181 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFN 181 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcC
Confidence 457999999999999999999887422211 12468899998888776654 3444443
No 245
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.97 E-value=0.022 Score=63.90 Aligned_cols=175 Identities=14% Similarity=0.109 Sum_probs=89.1
Q ss_pred cccccchhHHHHHHHHHh---cCCCC---CCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHH
Q 043855 184 AHVYGREIEKKEIVELLL---RDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVR 257 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 257 (946)
.+++|.++.++++.+... ....- +-.-.+-+.|+|++|+||||||+.++... .. ..+.++.+.-.+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~---~~i~i~g~~~~~--- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGSDFVE--- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---CEEEEEGGGGTS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEehhHHHH---
Confidence 468999887776665442 21100 00112238999999999999999999742 22 234444332110
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHhC----CceEEEEEcCCCCCC----------hhhH----hhhhccCCCC-
Q 043855 258 LIKVILRSFVADPNVDNRDLILLQLQLKKQLS----GKKFLFVLDDVWNES----------YNDW----VELSHPFEAG- 318 (946)
Q Consensus 258 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~----~kr~LlVlDdv~~~~----------~~~w----~~~~~~l~~~- 318 (946)
.. .......++..++ ..+.++++|++.... ...+ ..+...+..+
T Consensus 103 -----------~~------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 103 -----------MF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp -----------SC------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred -----------hh------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 00 0011122333333 235799999984321 1112 2222222211
Q ss_pred -CCCcEEEEEcCChhHHHh--hC---CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCCh
Q 043855 319 -APGSKIIVTTRNQGVAAI--MG---TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGLP 388 (946)
Q Consensus 319 -~~gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~GlP 388 (946)
..+..|+.||...++... .. -...+.+...+.++-.+++..++-+. ....... ...|++.+.|..
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 233456666766654221 11 12467888888888888887664321 1111111 334666777754
No 246
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.95 E-value=0.018 Score=59.60 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=54.6
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CcccHHHH-HHHHHHH
Q 043855 213 VLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV----DNRDLILL-QLQLKKQ 287 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~-~~~l~~~ 287 (946)
++-|.|++|+||||||.+++.....+..=..++||+..+.++... +++++..... ...+.+++ ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY-----LRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH-----HHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH-----HHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 789999999999999999886432110123678999988887642 5666554321 12344444 3332222
Q ss_pred --h-CCceEEEEEcCCCC
Q 043855 288 --L-SGKKFLFVLDDVWN 302 (946)
Q Consensus 288 --l-~~kr~LlVlDdv~~ 302 (946)
+ +++.-+||+|-+..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 2 45688999999854
No 247
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.94 E-value=0.018 Score=58.46 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=53.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccc----cCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----------CCCc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRD----HFDLKAWTCVSDDFDVVRLIKVILRSFVADP-----------NVDN 274 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----------~~~~ 274 (946)
...++.|+|++|+|||||+..++....... .-..++|++....++..++ .++++.++... ....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346999999999999999999987321211 1246888888776665543 33444443221 0011
Q ss_pred ccHHHHHHHHHHHhC-CceEEEEEcCCC
Q 043855 275 RDLILLQLQLKKQLS-GKKFLFVLDDVW 301 (946)
Q Consensus 275 ~~~~~~~~~l~~~l~-~kr~LlVlDdv~ 301 (946)
.+.......+.+.+. .+.-+||+|++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 111122233444443 467788999884
No 248
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.83 E-value=0.082 Score=56.80 Aligned_cols=158 Identities=9% Similarity=-0.077 Sum_probs=97.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH-HHh
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLK-KQL 288 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~-~~l 288 (946)
-.++..++|+.|.||++.|+.+..... ...|+....+......++.++. ..+. .-+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~----------------------~~~~~~pl 73 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAIF----------------------SLCQAMSL 73 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHHH----------------------HHHHHHHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHHH----------------------HHhcCcCC
Confidence 346889999999999999999887321 1234321122232233333322 2221 123
Q ss_pred CCceEEEEEcCCCC-CChhhHhhhhccCCCCCCCcEEEEEcCC-------hhHHHhh-CCCCcEeCCCCChHHHHHHHHH
Q 043855 289 SGKKFLFVLDDVWN-ESYNDWVELSHPFEAGAPGSKIIVTTRN-------QGVAAIM-GTVPAYQLKKLSDHDCLALFAR 359 (946)
Q Consensus 289 ~~kr~LlVlDdv~~-~~~~~w~~~~~~l~~~~~gs~iivTtR~-------~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~ 359 (946)
-+++-++|+|++.. .+...++.+...+.....++.+|++|.. ..+...+ .....++..++++++....+.+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 46677889999876 4445677777666554567777766543 2344443 3456789999999999888777
Q ss_pred hhcCCCCCCCchhHHHHHHHHHHhcCCChhHHHHH
Q 043855 360 HSLGTRDFSSHKSLEKIGREIVTKCDGLPLAAKTL 394 (946)
Q Consensus 360 ~a~~~~~~~~~~~l~~~~~~i~~~~~GlPLai~~~ 394 (946)
.+-..+- .--.+.++.+++.++|.+.++...
T Consensus 154 ~~~~~g~----~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 154 RAKQLNL----ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHTTC----EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHcCC----CCCHHHHHHHHHHhchHHHHHHHH
Confidence 6532211 112356788999999988877654
No 249
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.80 E-value=0.024 Score=60.39 Aligned_cols=90 Identities=17% Similarity=0.150 Sum_probs=55.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccccccc----CCceEEEEeCCCCCHHHHHHHHHHHhcCCCC--------CCcccH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDH----FDLKAWTCVSDDFDVVRLIKVILRSFVADPN--------VDNRDL 277 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--------~~~~~~ 277 (946)
...++.|+|.+|+||||||.+++........ -..++|++....++..++. ++++.++.... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 3468999999999999999999864221110 2467899998888776654 34455533210 011112
Q ss_pred H---HHHHHHHHHhC--CceEEEEEcCC
Q 043855 278 I---LLQLQLKKQLS--GKKFLFVLDDV 300 (946)
Q Consensus 278 ~---~~~~~l~~~l~--~kr~LlVlDdv 300 (946)
+ ++...+...++ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 23334444443 45678888887
No 250
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.73 E-value=0.021 Score=61.58 Aligned_cols=85 Identities=18% Similarity=0.073 Sum_probs=55.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CcccHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV----DNRDLILLQLQLK 285 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 285 (946)
...++.|.|.+|+||||||.+++.... ..-..++|++....++... ++.++..... ...+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~~-----a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPVY-----ARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHHH-----HHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 346889999999999999999887422 2223689999988776542 3444332110 2234556666666
Q ss_pred HHhCC-ceEEEEEcCCC
Q 043855 286 KQLSG-KKFLFVLDDVW 301 (946)
Q Consensus 286 ~~l~~-kr~LlVlDdv~ 301 (946)
...+. +.-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 65543 45589999984
No 251
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.0056 Score=67.15 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=92.2
Q ss_pred cccccchhHHHHHHHHHhc----CCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLR----DDL---MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
.++.|-++.+++|.+.+.. ++. .+-..++-|.++|++|.|||.||+++++. ....| +.+..+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~--- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLV--- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhh---
Confidence 5689999999888765432 110 01234577889999999999999999983 33332 334433211
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCC-------Ch---hhH----hhhhccCCC--CCC
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNE-------SY---NDW----VELSHPFEA--GAP 320 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-------~~---~~w----~~~~~~l~~--~~~ 320 (946)
... .......+...+...-...+++|++|+++.. .. ... ..+...+.. ...
T Consensus 253 -----------~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 253 -----------QMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp -----------SSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred -----------hcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 000 1111111222222222346899999998421 00 001 112222211 123
Q ss_pred CcEEEEEcCChhHHH-hh-C---CCCcEeCCCCChHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhcCCC
Q 043855 321 GSKIIVTTRNQGVAA-IM-G---TVPAYQLKKLSDHDCLALFARHSLGTRDFSSHKSLEKIGREIVTKCDGL 387 (946)
Q Consensus 321 gs~iivTtR~~~v~~-~~-~---~~~~~~l~~L~~~e~~~Lf~~~a~~~~~~~~~~~l~~~~~~i~~~~~Gl 387 (946)
+..||.||...+... .+ . -...+.++.-+.++-.++|..+.-.-.. ...-+ ...|++.+.|+
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 445666777654322 11 1 1235778877877777888755422111 11112 34567777774
No 252
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.71 E-value=0.034 Score=66.89 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=84.0
Q ss_pred cccccchhHHHHHHHHHhc----CCC---CCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHH
Q 043855 184 AHVYGREIEKKEIVELLLR----DDL---MNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 256 (946)
.+++|.+..+++|.+++.. ... -.-.....|.|+|++|+||||||+.++.. ....| +.+..+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH-----
Confidence 5689999999998887753 100 01123457899999999999999999973 33222 3333211
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh--------------hhHhhhhccCCCCCCCc
Q 043855 257 RLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY--------------NDWVELSHPFEAGAPGS 322 (946)
Q Consensus 257 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~w~~~~~~l~~~~~gs 322 (946)
+.... .......+...++......+.++++|++..... ..+..+...+.. ..+.
T Consensus 274 ---------l~~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~~v 341 (806)
T 1ypw_A 274 ---------IMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHV 341 (806)
T ss_dssp ---------HSSSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TSCC
T ss_pred ---------hhhhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cccE
Confidence 11110 111122233334444445678999999842210 001111111211 1344
Q ss_pred EEEEEcCChh-HHHhhC---C-CCcEeCCCCChHHHHHHHHHhh
Q 043855 323 KIIVTTRNQG-VAAIMG---T-VPAYQLKKLSDHDCLALFARHS 361 (946)
Q Consensus 323 ~iivTtR~~~-v~~~~~---~-~~~~~l~~L~~~e~~~Lf~~~a 361 (946)
.||.||...+ +...+. . ...+.+...+.++-.+++...+
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 5666665542 211111 1 1346778888888888887664
No 253
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.70 E-value=0.0047 Score=61.35 Aligned_cols=114 Identities=11% Similarity=-0.158 Sum_probs=61.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-CcccHHHHHHHHHHHh
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV-DNRDLILLQLQLKKQL 288 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l 288 (946)
...++.|+|..|+||||++..+.+.. ..+-..++.+..... .+ ....+++.++..... ......++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~--~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 34799999999999999998888743 222223333332221 11 112333333322111 1122344555555555
Q ss_pred CCceE-EEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcCCh
Q 043855 289 SGKKF-LFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTRNQ 331 (946)
Q Consensus 289 ~~kr~-LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR~~ 331 (946)
.+.++ +||+|.+...+.+..+.+ ..+.+ .|..||+|-+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 54444 999999965443333333 22222 267899998854
No 254
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.68 E-value=0.011 Score=58.04 Aligned_cols=42 Identities=29% Similarity=0.249 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhc
Q 043855 189 REIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
|++.++.|.+.+.... .....+|+|+|+.|+||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5566778888876542 23568999999999999999999986
No 255
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.67 E-value=0.053 Score=56.03 Aligned_cols=156 Identities=14% Similarity=0.047 Sum_probs=76.5
Q ss_pred cccccchhHHHHHHHHHhcCC--------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCH
Q 043855 184 AHVYGREIEKKEIVELLLRDD--------LMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDV 255 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 255 (946)
.++.|-++.+++|.+.+...- ..-..... +.|+|++|.||||||+.++..... ..+++...+-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh
Confidence 346677776666655432100 00011122 899999999999999999974221 2344443321110
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCCCCh-----------hhHhhhhccCCCC--CCCc
Q 043855 256 VRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWNESY-----------NDWVELSHPFEAG--APGS 322 (946)
Q Consensus 256 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~w~~~~~~l~~~--~~gs 322 (946)
. .......+....+..-...+.++++|++..... .....+...+..+ ....
T Consensus 84 --------------~--~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 --------------Y--VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp --------------T--THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred --------------h--hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 0 000011111122222234578999999854210 0011111112211 1233
Q ss_pred EEEEEcCChhHHHh--h---CCCCcEeCCCCChHHHHHHHHHhh
Q 043855 323 KIIVTTRNQGVAAI--M---GTVPAYQLKKLSDHDCLALFARHS 361 (946)
Q Consensus 323 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~a 361 (946)
-++.+|...++... . .-...+.+...+.++-.++|....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 45567766654321 1 123457788888888888887654
No 256
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.55 E-value=0.023 Score=60.56 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=54.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccc---------cC-----CceEEEEeCCCCCHHHHHHHHHHHhcCCCC----
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRD---------HF-----DLKAWTCVSDDFDVVRLIKVILRSFVADPN---- 271 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---- 271 (946)
...++.|+|.+|+||||||.+++.+..... .. ..++|++....++..++.. +++.++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 457999999999999999999886421111 11 4688999888887776653 4455543210
Q ss_pred ----CCcccHH---HHHHHHHHHhC--CceEEEEEcCC
Q 043855 272 ----VDNRDLI---LLQLQLKKQLS--GKKFLFVLDDV 300 (946)
Q Consensus 272 ----~~~~~~~---~~~~~l~~~l~--~kr~LlVlDdv 300 (946)
....+.+ ++...+.+.++ .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0111222 23334444443 34568888887
No 257
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.53 E-value=0.018 Score=51.85 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=41.6
Q ss_pred eEEEecCCCCc--cCCccccCCCCCcEEeccCCCccccccc-hhcCCCCcEEecCCCC
Q 043855 596 RVFSLCGYEIF--ELPDSIGELRHLRYLNLSRTLIEVLPES-VNKLYKLQTLLLEDCD 650 (946)
Q Consensus 596 r~L~L~~~~~~--~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~ 650 (946)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+|.. |..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36788888888 8886543 4688999999999888765 6778888888888874
No 258
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.40 E-value=0.027 Score=60.37 Aligned_cols=86 Identities=17% Similarity=0.098 Sum_probs=54.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CcccHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV----DNRDLILLQLQLK 285 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 285 (946)
..+++.|+|.+|+||||||.+++.... ..=..++|++....++.. .++.++..... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 447899999999999999999986422 122357899988777653 23444432210 1234455555555
Q ss_pred HHhC-CceEEEEEcCCCC
Q 043855 286 KQLS-GKKFLFVLDDVWN 302 (946)
Q Consensus 286 ~~l~-~kr~LlVlDdv~~ 302 (946)
...+ .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 4444 3466999999843
No 259
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.30 E-value=0.067 Score=55.62 Aligned_cols=82 Identities=16% Similarity=0.081 Sum_probs=45.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccc-cCCceEEEEeCCCCCHHHHHHHHHHHh------cCCCCCCcccHHHHH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRD-HFDLKAWTCVSDDFDVVRLIKVILRSF------VADPNVDNRDLILLQ 281 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~il~~l------~~~~~~~~~~~~~~~ 281 (946)
....+|+|+|..|+||||||+.+..-..... ....+..|+...-+-.......+.... .........+...+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4678999999999999999999886322211 122344435444333333334333221 111112455666666
Q ss_pred HHHHHHhCC
Q 043855 282 LQLKKQLSG 290 (946)
Q Consensus 282 ~~l~~~l~~ 290 (946)
..+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666665444
No 260
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.10 E-value=0.03 Score=60.03 Aligned_cols=85 Identities=19% Similarity=0.066 Sum_probs=52.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CcccHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV----DNRDLILLQLQLK 285 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 285 (946)
..+++.|.|.+|+||||||.+++.... ..=..++|++....++... ++.++..... ...+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 346899999999999999999887422 2223688999988777542 3444332110 1123444444444
Q ss_pred HHhC-CceEEEEEcCCC
Q 043855 286 KQLS-GKKFLFVLDDVW 301 (946)
Q Consensus 286 ~~l~-~kr~LlVlDdv~ 301 (946)
...+ .+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 3332 345589999874
No 261
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.99 E-value=0.013 Score=56.42 Aligned_cols=114 Identities=18% Similarity=0.110 Sum_probs=57.9
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCC---CCCHHHHHHHHHHHhcC------CCC-CCc-------
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSD---DFDVVRLIKVILRSFVA------DPN-VDN------- 274 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~il~~l~~------~~~-~~~------- 274 (946)
..|-|++..|.||||.|-...- +..++=-.+..+.... .....+++ +.+.. ..- -..
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHHH
Confidence 4566677777999999987775 3222222344443322 22223333 33310 000 000
Q ss_pred ccHHHHHHHHHHHhCCceE-EEEEcCCCC---CChhhHhhhhccCCCCCCCcEEEEEcCCh
Q 043855 275 RDLILLQLQLKKQLSGKKF-LFVLDDVWN---ESYNDWVELSHPFEAGAPGSKIIVTTRNQ 331 (946)
Q Consensus 275 ~~~~~~~~~l~~~l~~kr~-LlVlDdv~~---~~~~~w~~~~~~l~~~~~gs~iivTtR~~ 331 (946)
......-...++.+.+.+| |||||++-. -.....+++...+........||+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1112223345556655555 999999822 11123344444444444567899999985
No 262
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.92 E-value=0.067 Score=53.60 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=32.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccccc---c-cCCceEEEEeCCCCCHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVR---D-HFDLKAWTCVSDDFDVV 256 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~~~ 256 (946)
.-.+++|+|++|+|||||++.++...... . .-...+|+.....+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 45799999999999999999997521111 1 12357788766554443
No 263
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.81 E-value=0.02 Score=56.57 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 192 EKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
-.++|.+.+... .....+|+|+|+.|.|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555432 235689999999999999999999863
No 264
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.73 E-value=0.054 Score=58.12 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=52.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccC----CceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----------CCc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHF----DLKAWTCVSDDFDVVRLIKVILRSFVADPN-----------VDN 274 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----------~~~ 274 (946)
...++.|+|++|+|||||+..++......... ..++|++....+...++ ..+.+....... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45899999999999999999998742111111 23488888766544433 334443322110 011
Q ss_pred ccHHHHHHHHHHHhC------CceEEEEEcCCCC
Q 043855 275 RDLILLQLQLKKQLS------GKKFLFVLDDVWN 302 (946)
Q Consensus 275 ~~~~~~~~~l~~~l~------~kr~LlVlDdv~~ 302 (946)
....++...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 112233333444443 4677999999843
No 265
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.73 E-value=0.056 Score=56.47 Aligned_cols=87 Identities=15% Similarity=0.056 Sum_probs=44.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHh
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDD-FDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQL 288 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 288 (946)
...++.|+|++|+||||++..++.-...... ..+..+..... ....+.+....+..+.... ...+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~-~~~~~~~l~~al~~-~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLE-VCYTKEEFQQAKEL-F 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC-BCSSHHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeE-ecCCHHHHHHHHHH-h
Confidence 4579999999999999999999863321111 13444444321 2232223333322222211 11233444444443 3
Q ss_pred CCceEEEEEcCC
Q 043855 289 SGKKFLFVLDDV 300 (946)
Q Consensus 289 ~~kr~LlVlDdv 300 (946)
.+.=++|+|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 34457888844
No 266
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.67 E-value=0.24 Score=54.26 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+.||.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988886
No 267
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.59 E-value=0.02 Score=55.58 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999873
No 268
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.51 E-value=0.1 Score=55.13 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=38.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSF 266 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 266 (946)
...++.|.|.+|+||||+|.+++.+...++ ..++|++.. .+..++...++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 447899999999999999999986432222 467777765 45677777766553
No 269
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.45 E-value=0.025 Score=63.57 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=35.5
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 185 HVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++|.+..++.+...+... .-|.|+|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 4789999998888777543 36789999999999999999984
No 270
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.44 E-value=0.017 Score=55.41 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 271
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.36 E-value=0.019 Score=54.79 Aligned_cols=20 Identities=45% Similarity=0.745 Sum_probs=18.8
Q ss_pred EEEEEEecCCChHHHHHHHH
Q 043855 212 SVLPIVGMGGLGKTTLAQLV 231 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v 231 (946)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 272
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.26 E-value=0.04 Score=57.43 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhc
Q 043855 193 KKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.++++..++.... ......+|.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 16 LNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443321 234568999999999999999999986
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.26 E-value=0.023 Score=54.59 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999986
No 274
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.21 E-value=0.022 Score=54.26 Aligned_cols=22 Identities=18% Similarity=0.150 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 275
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.20 E-value=0.093 Score=57.15 Aligned_cols=57 Identities=19% Similarity=0.132 Sum_probs=38.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcccccc----ccCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVR----DHFDLKAWTCVSDDFDVVRLIKVILRSFV 267 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 267 (946)
.-.++.|+|++|+|||||+..++-..... ..-..++|++....++...+ +.+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 44799999999999999999775321111 12245888888777666554 33555554
No 276
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.20 E-value=0.021 Score=55.93 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 277
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.15 E-value=0.029 Score=55.05 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+|+|+|++|.||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999873
No 278
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.12 E-value=0.044 Score=57.64 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=32.3
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhc
Q 043855 187 YGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
+|....+..+...+.... ......+|+|.|+.|+||||+|+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 454455555555554442 235678999999999999999999875
No 279
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.12 E-value=0.024 Score=54.48 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999863
No 280
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.06 E-value=0.036 Score=60.12 Aligned_cols=50 Identities=30% Similarity=0.284 Sum_probs=36.1
Q ss_pred ccccchhHHHHHHHHHhcC-------C--CCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 185 HVYGREIEKKEIVELLLRD-------D--LMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 185 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++|.+..++.+...+... . .........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4789999888888777210 0 001123457889999999999999999973
No 281
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.01 E-value=0.057 Score=48.55 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=44.7
Q ss_pred cEEeccCCCcc--ccccchhcCCCCcEEecCCCCchhhchhh-hcccCccCeeecCCCC
Q 043855 619 RYLNLSRTLIE--VLPESVNKLYKLQTLLLEDCDRLKKLCAS-LGNLINLHHLNNSNTD 674 (946)
Q Consensus 619 r~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 674 (946)
..++.+++.++ .+|..+. .+|++|+|++| .+..+|.. +..+++|++|+|.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 47889999998 8987643 47999999999 78888765 6789999999999987
No 282
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.99 E-value=0.057 Score=57.44 Aligned_cols=53 Identities=15% Similarity=-0.045 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccc-cccCCceEEEEeCCCC
Q 043855 195 EIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRV-RDHFDLKAWTCVSDDF 253 (946)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~ 253 (946)
++++.+..-. ....++|+|++|.|||||++.+.+.... ...+. ++++-+++..
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 4566665442 4468899999999999999998863211 12233 3456677653
No 283
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.97 E-value=0.042 Score=56.15 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhc
Q 043855 192 EKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 192 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..++++..+..... ......+|.|+|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 14 ALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555554332 334568999999999999999999987
No 284
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.93 E-value=0.054 Score=57.32 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=32.1
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhc
Q 043855 187 YGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 187 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
|+-+.-.+++++.+...- ..+....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 444555666766664322 123556789999999999999999887
No 285
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.91 E-value=0.069 Score=58.75 Aligned_cols=50 Identities=20% Similarity=0.273 Sum_probs=32.7
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC-CHHHHHHHH
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF-DVVRLIKVI 262 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i 262 (946)
+.++|+|.+|+|||||++.+..+.... +-+..+++.+.+.. ...+++.++
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l 202 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEM 202 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHh
Confidence 468899999999999999998743222 22345666666654 233444444
No 286
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.86 E-value=0.033 Score=52.95 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=20.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 347999999999999999997654
No 287
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.85 E-value=0.038 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 288
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.84 E-value=0.034 Score=54.05 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999986
No 289
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.83 E-value=0.085 Score=52.89 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=27.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCC
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSD 251 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 251 (946)
..++.|+|++|+|||||++.++...... =..+.|+....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~ 61 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE 61 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc
Confidence 3689999999999999999998532211 12456665443
No 290
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.77 E-value=0.026 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+|+|+|++|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 291
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.73 E-value=0.028 Score=54.22 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=20.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999987
No 292
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.68 E-value=0.033 Score=54.96 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3478999999999999999999874
No 293
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.67 E-value=0.032 Score=54.68 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999986
No 294
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.66 E-value=0.034 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 295
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.61 E-value=0.035 Score=54.59 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 36899999999999999999986
No 296
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.56 E-value=0.04 Score=54.45 Aligned_cols=24 Identities=42% Similarity=0.335 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 297
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.52 E-value=0.049 Score=53.63 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
....+|+|+|++|+||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999999873
No 298
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.47 E-value=0.03 Score=55.05 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+|.|+|++|+||||+++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999873
No 299
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.43 E-value=0.041 Score=53.32 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 300
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.37 E-value=0.039 Score=54.47 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+||.|.|++|+||||.|+.++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999974
No 301
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.37 E-value=0.063 Score=54.85 Aligned_cols=51 Identities=31% Similarity=0.292 Sum_probs=32.6
Q ss_pred cccccchhHHHHHHHHHhcCCC------CCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDDL------MNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+++|.+..++++.+....-.. .+-.-.+-+.|+|++|+||||||+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4688988766666544321100 00001122889999999999999999974
No 302
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.37 E-value=0.11 Score=50.24 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=28.0
Q ss_pred ccCceeEEEecCC-CCcc-----CCccccCCCCCcEEeccCCCcc-----ccccchhcCCCCcEEecCCC
Q 043855 591 RLQRLRVFSLCGY-EIFE-----LPDSIGELRHLRYLNLSRTLIE-----VLPESVNKLYKLQTLLLEDC 649 (946)
Q Consensus 591 ~~~~Lr~L~L~~~-~~~~-----lp~~i~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~ 649 (946)
+-+.|+.|+|+++ .+.. +-+.+..=.+|+.|+|++|.|. .+-+.+..-+.|++|+|++|
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 3445555555553 4331 2233444455555555555554 22333334455555555555
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.30 E-value=0.032 Score=54.76 Aligned_cols=24 Identities=17% Similarity=0.439 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+|.|.|++|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 304
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.30 E-value=0.042 Score=52.57 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.9
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 305
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.28 E-value=0.032 Score=53.92 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 306
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.27 E-value=0.048 Score=53.44 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
....+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 307
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.26 E-value=0.033 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46788999999999999999986
No 308
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.25 E-value=0.043 Score=53.98 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+++|+|++|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999863
No 309
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.25 E-value=0.042 Score=56.11 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+|.|+|++|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57899999999999999999863
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.23 E-value=0.04 Score=53.40 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 311
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.22 E-value=0.2 Score=54.91 Aligned_cols=65 Identities=22% Similarity=0.284 Sum_probs=44.3
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC-CHHHHHHHHHHH
Q 043855 195 EIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF-DVVRLIKVILRS 265 (946)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~ 265 (946)
+.++.|..- ++-.-++|+|.+|+|||+|++++.++. .+.+-+..+++-+.+.. .+.++.+++.+.
T Consensus 142 r~ID~l~pi-----gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY-----AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE-----ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc-----ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 456766543 244678999999999999999998742 12333567778888764 355666666554
No 312
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.22 E-value=0.18 Score=53.33 Aligned_cols=54 Identities=17% Similarity=0.018 Sum_probs=38.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFV 267 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 267 (946)
...++.|.|.+|+||||+|..++.+... .=..++|++. ..+..++...++....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 3468899999999999999999875322 1134666655 3467777777766543
No 313
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.21 E-value=0.052 Score=53.24 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
....+|.|.|++|+||||+|+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999986
No 314
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.18 E-value=0.028 Score=54.02 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.7
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999986
No 315
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.14 E-value=0.54 Score=63.20 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=46.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGK 291 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 291 (946)
+-|.++|++|.|||++|+.+.... ..+ ..+.++.+...+...+++.+-..+.........-. .-.-.++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~-------~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL-------LPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEE-------EEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccc-------cCCCCCc
Confidence 567899999999999997776532 122 34567777776776665555443321110000000 0001467
Q ss_pred eEEEEEcCCCC
Q 043855 292 KFLFVLDDVWN 302 (946)
Q Consensus 292 r~LlVlDdv~~ 302 (946)
+.++.+||+.-
T Consensus 1337 ~~VlFiDEinm 1347 (2695)
T 4akg_A 1337 NLVLFCDEINL 1347 (2695)
T ss_dssp CEEEEEETTTC
T ss_pred eEEEEeccccc
Confidence 89999999743
No 316
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.09 E-value=0.036 Score=54.22 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 317
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.08 E-value=0.046 Score=53.19 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 318
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.06 E-value=0.046 Score=52.68 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+|.|+|++|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 319
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.05 E-value=0.048 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 320
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.03 E-value=0.059 Score=52.00 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+|.|+|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 321
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.02 E-value=0.048 Score=52.80 Aligned_cols=25 Identities=20% Similarity=0.565 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..++++|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4578999999999999999999863
No 322
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.98 E-value=0.049 Score=51.25 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+++.|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999873
No 323
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.98 E-value=0.051 Score=55.76 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 324
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.95 E-value=0.046 Score=53.60 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999873
No 325
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.94 E-value=0.056 Score=56.92 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
....+|+|+|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3568999999999999999999986
No 326
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.93 E-value=0.04 Score=52.61 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~ 233 (946)
+|.|+|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 327
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.91 E-value=0.045 Score=51.78 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999987
No 328
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.88 E-value=0.05 Score=53.43 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999986
No 329
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.84 E-value=0.44 Score=52.20 Aligned_cols=25 Identities=32% Similarity=0.227 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+|.++|++|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999864
No 330
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.83 E-value=0.057 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...|.|.|++|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 331
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.82 E-value=0.065 Score=49.99 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|+.|.|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999986
No 332
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.81 E-value=0.053 Score=53.45 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346999999999999999999986
No 333
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.78 E-value=0.052 Score=55.19 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|++|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999994
No 334
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.75 E-value=0.059 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 335
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.74 E-value=0.082 Score=54.84 Aligned_cols=51 Identities=31% Similarity=0.292 Sum_probs=33.3
Q ss_pred cccccchhHHHHHHHHHhcCCC------CCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDDL------MNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+++|.+..++++.+....-.. .+-.-.+-+.|+|++|+||||||+.++..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 4688988777666554321100 00001122889999999999999999974
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.73 E-value=0.059 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=21.3
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 337
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.72 E-value=0.059 Score=56.45 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999986
No 338
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.72 E-value=0.054 Score=54.20 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+|+|+|++|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 339
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.71 E-value=0.075 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+|.|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999986
No 340
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.70 E-value=0.06 Score=52.71 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+|.|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999987
No 341
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.69 E-value=0.42 Score=52.64 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCC---CCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 193 KKEIVELLLRDDL---MNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 193 ~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+++.++|..... ......++|.|+|.+|+||||++..++..
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4556666643211 01235789999999999999999999864
No 342
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.59 E-value=0.26 Score=52.32 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc-ccCCceEEEEeCCC
Q 043855 194 KEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVR-DHFDLKAWTCVSDD 252 (946)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~ 252 (946)
-++++.+..- ++..-++|+|.+|+|||+|++++.+..... ..+. ++++-+++.
T Consensus 163 iraID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred chhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 3567777654 234577999999999999999998732111 1233 245666654
No 343
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.59 E-value=0.041 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999987
No 344
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.57 E-value=0.069 Score=54.22 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 447999999999999999999976
No 345
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.55 E-value=0.056 Score=52.75 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+|.|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 346
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.54 E-value=0.05 Score=54.10 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=21.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 347
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.44 E-value=0.063 Score=53.28 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3479999999999999999999863
No 348
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.42 E-value=0.069 Score=56.22 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=27.4
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCC
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSD 251 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 251 (946)
++.+||+|.|-|||||||.+-.+..-- ...=..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL--A~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH--HHCCCeEEEEecCC
Confidence 456999999999999999887776521 11112355566553
No 349
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.42 E-value=0.048 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 350
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.37 E-value=0.91 Score=50.82 Aligned_cols=42 Identities=31% Similarity=0.316 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 193 KKEIVELLLRDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 193 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++|.+.+.....+ ......+|.|+|.+|+||||++..++..
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35555665432211 1145789999999999999999999863
No 351
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.36 E-value=0.058 Score=58.13 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=32.6
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+++|.+..++.+...+.... ..-+.|+|++|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 358999886665544443221 123889999999999999999973
No 352
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.35 E-value=0.1 Score=52.81 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+|.|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 353
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.33 E-value=0.062 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=21.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 354
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.30 E-value=0.071 Score=54.38 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 355
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.30 E-value=0.075 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+|.|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999987
No 356
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.28 E-value=0.043 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=17.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 357
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.27 E-value=0.13 Score=49.71 Aligned_cols=113 Identities=17% Similarity=0.139 Sum_probs=65.5
Q ss_pred ccccceeeccCCCCCCCccchhHHhhhhhcccCceeEEEecCCCCcc-----CCccccCCCCCcEEeccCCCcc-----c
Q 043855 561 DIVCLRTFLPVNLPNSSRGLLAFRVLHQLLRLQRLRVFSLCGYEIFE-----LPDSIGELRHLRYLNLSRTLIE-----V 630 (946)
Q Consensus 561 ~~~~LrsL~~~~~~~~~~~~~~~~~~~~l~~~~~Lr~L~L~~~~~~~-----lp~~i~~l~~Lr~L~Ls~~~i~-----~ 630 (946)
+-+.|+.|.+.++..... .-...+...+..-+.|+.|+|++|.+.. +.+.+..=..|++|+|++|.|. .
T Consensus 39 ~n~~L~~L~L~~nn~igd-~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSK-ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCH-HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCH-HHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 456777887765311100 0001223334456778888888887762 3344555577888888888876 2
Q ss_pred cccchhcCCCCcEEecCCCCc--hh-----hchhhhcccCccCeeecCCCC
Q 043855 631 LPESVNKLYKLQTLLLEDCDR--LK-----KLCASLGNLINLHHLNNSNTD 674 (946)
Q Consensus 631 lp~~i~~L~~L~~L~L~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~~ 674 (946)
+-+.+..-+.|++|+|++|.. ++ .+-..+..=+.|..|+++.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 334455556688888875421 21 233344445677777776554
No 358
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.26 E-value=0.066 Score=50.58 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 359
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.24 E-value=0.36 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...++.|+|++|+||||++..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999874
No 360
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.22 E-value=0.15 Score=49.57 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 361
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.22 E-value=0.071 Score=52.75 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=21.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 362
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.19 E-value=0.32 Score=54.43 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+.+.|.|.+|+||||++..+...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHH
Confidence 38999999999999999998874
No 363
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.14 E-value=0.16 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
....+|+|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3458999999999999999999986
No 364
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.13 E-value=0.4 Score=52.84 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=44.6
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC-CHHHHHHHHHHH
Q 043855 196 IVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF-DVVRLIKVILRS 265 (946)
Q Consensus 196 l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~il~~ 265 (946)
.++.|..- .+-.-++|+|.+|+|||+|+..+.++. .+.+-+..+++-+.+.. .+.++.+++.+.
T Consensus 155 vID~l~pi-----gkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 155 VVNLLAPY-----RRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp THHHHSCC-----CTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred Eeeeeccc-----ccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 46666543 244568999999999999999998742 22344678888888775 355666666543
No 365
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.11 E-value=0.071 Score=52.63 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+|+|.|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 366
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.08 E-value=0.074 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999995
No 367
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.07 E-value=0.071 Score=51.73 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~ 233 (946)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 368
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.06 E-value=0.28 Score=56.32 Aligned_cols=104 Identities=14% Similarity=0.096 Sum_probs=55.6
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH-HHhC-
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNVDNRDLILLQLQLK-KQLS- 289 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~-~~l~- 289 (946)
+++.|.|.+|.||||++..+....... ...+.+...... ....+.+.++. .......+..... .+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~----Aa~~L~e~~~~----~a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGK----AARRLGEVTGR----TASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHH----HHHHHHHHHTS----CEEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHH----HHHHhHhhhcc----cHHHHHHHHcCCcchhhhh
Confidence 688899999999999999988632211 134445443321 12222222221 1112211100000 0000
Q ss_pred ----CceEEEEEcCCCCCChhhHhhhhccCCCCCCCcEEEEEcC
Q 043855 290 ----GKKFLFVLDDVWNESYNDWVELSHPFEAGAPGSKIIVTTR 329 (946)
Q Consensus 290 ----~kr~LlVlDdv~~~~~~~w~~~~~~l~~~~~gs~iivTtR 329 (946)
.+--+||+|++...+...+..+...++ .+.++|+.--
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 022489999998777667777777665 4667777543
No 369
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.05 E-value=0.13 Score=51.32 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4588999999999999999999874
No 370
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.96 E-value=0.058 Score=51.12 Aligned_cols=23 Identities=39% Similarity=0.432 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999863
No 371
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.93 E-value=0.095 Score=54.36 Aligned_cols=25 Identities=40% Similarity=0.676 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999983
No 372
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.90 E-value=0.13 Score=56.50 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=35.9
Q ss_pred cccccchhHHHHHHHHHhcC--------CCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRD--------DLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+++|-++.++.+...+... ........+-+.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45889888888887666321 0000113456889999999999999999973
No 373
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.88 E-value=0.085 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 374
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.88 E-value=0.074 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=21.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.85 E-value=0.048 Score=54.00 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999863
No 376
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.85 E-value=0.11 Score=50.16 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 193 KKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+..+..++... +....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45555655431 23356899999999999999998874
No 377
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.83 E-value=0.16 Score=53.02 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
....++.|+|++|+||||++..++.-
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 35689999999999999999999873
No 378
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.81 E-value=0.36 Score=48.41 Aligned_cols=91 Identities=20% Similarity=0.185 Sum_probs=47.0
Q ss_pred EEEEEEecCCChHHHHHHHHhcccc-ccccC-CceEEEEeCCCCCHHHHHHHHHHHhcCCCCC-----------------
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDR-VRDHF-DLKAWTCVSDDFDVVRLIKVILRSFVADPNV----------------- 272 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F-~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----------------- 272 (946)
+.+.|+|+.|.||||+...+.-+.. ..... ...+.+......-..++...+...++.....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 5789999999999987665543211 11111 2234444443333334444444333322100
Q ss_pred --CcccHHHHHHHHHHHhCCceEEEEEcCCCCC
Q 043855 273 --DNRDLILLQLQLKKQLSGKKFLFVLDDVWNE 303 (946)
Q Consensus 273 --~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~ 303 (946)
.....+.+...+...+.+- -+||+|.++..
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~-~~lVlDEah~~ 188 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGI-SHVIVDEIHER 188 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTC-CEEEECCTTSC
T ss_pred eEEEECHHHHHHHHHhhhcCC-cEEEEECCccC
Confidence 0123455555555544333 47899999763
No 379
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.75 E-value=0.094 Score=51.79 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+|.|.|+.|+||||+|+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999873
No 380
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.71 E-value=0.095 Score=54.84 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+++|+|+.|+||||+++.++.-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999873
No 381
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.71 E-value=0.073 Score=53.06 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...|.|.|++|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999873
No 382
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.69 E-value=0.4 Score=52.78 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999999873
No 383
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.67 E-value=0.23 Score=48.27 Aligned_cols=50 Identities=20% Similarity=0.186 Sum_probs=30.5
Q ss_pred EEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHH
Q 043855 213 VLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILR 264 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 264 (946)
.|+|-|.-|+||||.++.+++. .+..-..+++..-+......+.+++++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHhh
Confidence 3678899999999999999873 3333223444433333334445555543
No 384
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.67 E-value=0.18 Score=53.90 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
....+++|+|+.|+||||+++.++.-
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 35689999999999999999999873
No 385
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.61 E-value=0.085 Score=51.67 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=21.2
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+|+|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999974
No 386
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.61 E-value=0.21 Score=55.08 Aligned_cols=95 Identities=20% Similarity=0.261 Sum_probs=53.8
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHH-HHHhccccccccCC-ceEEEEeCCCC-CHHHHHHHHHHHhcCCC-
Q 043855 195 EIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLA-QLVYNDDRVRDHFD-LKAWTCVSDDF-DVVRLIKVILRSFVADP- 270 (946)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~il~~l~~~~- 270 (946)
+.++.|..- ++-.-++|+|.+|+|||+|| ..+.+.. +-+ ..+++-+++.. .+.++.+++.+.=..+.
T Consensus 151 raID~l~Pi-----grGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~t 221 (502)
T 2qe7_A 151 KAIDSMIPI-----GRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYT 221 (502)
T ss_dssp HHHHHSSCC-----BTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTE
T ss_pred eeccccccc-----ccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCccee
Confidence 346666543 23456789999999999995 5777732 234 34677777754 34455555543211110
Q ss_pred ------CCCcccHH--------HHHHHHHHHhCCceEEEEEcCC
Q 043855 271 ------NVDNRDLI--------LLQLQLKKQLSGKKFLFVLDDV 300 (946)
Q Consensus 271 ------~~~~~~~~--------~~~~~l~~~l~~kr~LlVlDdv 300 (946)
..++.... .+++.++. +++..|+++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLl~~Dsl 263 (502)
T 2qe7_A 222 IVVTASASEPAPLLYLAPYAGCAMGEYFMY--KGKHALVVYDDL 263 (502)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 00111111 12233333 578999999998
No 387
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.59 E-value=0.077 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+++|+|+.|+|||||++.++..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 36899999999999999999864
No 388
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.54 E-value=0.14 Score=50.88 Aligned_cols=40 Identities=25% Similarity=0.235 Sum_probs=28.9
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 189 REIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 189 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++..+.+.+.+.. ....+|.|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 33444555554432 24689999999999999999999874
No 389
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.53 E-value=0.088 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.5
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
No 390
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.51 E-value=0.093 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|.|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999986
No 391
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.47 E-value=0.091 Score=52.91 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+++|+|+.|.|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999986
No 392
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.42 E-value=0.11 Score=51.61 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.9
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 393
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.41 E-value=0.26 Score=63.82 Aligned_cols=85 Identities=19% Similarity=0.066 Sum_probs=54.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CcccHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV----DNRDLILLQLQLK 285 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 285 (946)
..+++.|+|++|+|||+||.++..... ..=..++|+++.+.++... ++.++.+... .....++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 457999999999999999999987432 2223578888888777665 3444322110 1223344444555
Q ss_pred HHhC-CceEEEEEcCCC
Q 043855 286 KQLS-GKKFLFVLDDVW 301 (946)
Q Consensus 286 ~~l~-~kr~LlVlDdv~ 301 (946)
...+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 4433 466799999983
No 394
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.38 E-value=0.097 Score=52.16 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|.|||||.+.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999986
No 395
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.32 E-value=0.095 Score=51.93 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 396
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.31 E-value=0.15 Score=49.20 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457889999999999999999875
No 397
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.27 E-value=0.12 Score=54.67 Aligned_cols=25 Identities=36% Similarity=0.310 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+++|+|+.|+||||+++.++.-
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999873
No 398
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.17 E-value=0.1 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 347999999999999999999884
No 399
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.12 E-value=0.57 Score=53.13 Aligned_cols=55 Identities=9% Similarity=-0.015 Sum_probs=38.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFV 267 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~ 267 (946)
...++.|.|.+|+||||||.+++.+...+ +=..++|++... +..++...++....
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHHc
Confidence 44788999999999999999998743222 113567776654 56677777765543
No 400
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.10 E-value=0.074 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=16.5
Q ss_pred cEEEEEEecCCChHHHHHHHHh-c
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVY-N 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~-~ 233 (946)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 5
No 401
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.09 E-value=0.11 Score=52.32 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+++|+|+.|.|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999863
No 402
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.06 E-value=0.12 Score=60.14 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=35.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 184 AHVYGREIEKKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 184 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+++|.+..++.+...+... ..+.|+|++|+||||||+.++.-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899988888877777432 47899999999999999999973
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.02 E-value=0.083 Score=53.52 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 404
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.01 E-value=0.098 Score=51.25 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+|.|.|++|+||||.|+.++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999974
No 405
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.00 E-value=0.11 Score=49.39 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+++.|+|+.|+|||||++.+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999873
No 406
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.90 E-value=0.12 Score=54.63 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=21.1
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+|+|.|+.|+||||||+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999873
No 407
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.90 E-value=0.11 Score=53.05 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|+.|.|||||.+.++.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999986
No 408
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.86 E-value=0.097 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999873
No 409
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.82 E-value=0.23 Score=53.45 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhc
Q 043855 193 KKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+.+.+.... +...+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 444555554322 4678999999999999999999875
No 410
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.80 E-value=0.14 Score=51.86 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|+.|.|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 347999999999999999999985
No 411
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.80 E-value=0.11 Score=53.34 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=21.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|.|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999985
No 412
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.74 E-value=0.12 Score=51.42 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 413
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.73 E-value=0.22 Score=49.78 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
....|.|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999984
No 414
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.70 E-value=0.12 Score=52.75 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|+.|.|||||++.++.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346899999999999999999986
No 415
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.69 E-value=0.15 Score=53.64 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..++|.|+|+.|+||||||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999973
No 416
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.64 E-value=0.12 Score=50.71 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~ 233 (946)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999986
No 417
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.60 E-value=0.094 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999853
No 418
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.57 E-value=0.27 Score=58.22 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=58.2
Q ss_pred ccccccchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCH
Q 043855 183 EAHVYGREIEKKEIVELLLRDD-------LMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDV 255 (946)
Q Consensus 183 ~~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 255 (946)
-.++.|.++.+++|.+.+.-.- ..+-...+-+.++|++|.|||.+|+++++. .... ++.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~-----f~~v~~---- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIKG---- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCE-----EEECCH----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCc-----eEEecc----
Confidence 3567788888888776654321 001223455789999999999999999984 2222 233321
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHhCCceEEEEEcCCCC
Q 043855 256 VRLIKVILRSFVADPNVDNRDLILLQLQLKKQLSGKKFLFVLDDVWN 302 (946)
Q Consensus 256 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 302 (946)
. +++....+ .....+...+...-+..+.+|+||+++.
T Consensus 545 ~----~l~s~~vG------ese~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 545 P----ELLTMWFG------ESEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp H----HHHTTTCS------SCHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred c----hhhccccc------hHHHHHHHHHHHHHHcCCceeechhhhH
Confidence 1 22222211 2223344444444456789999999853
No 419
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.53 E-value=0.73 Score=51.36 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=35.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILR 264 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~ 264 (946)
...++.|.|.+|+||||||..++.+.... .=..++|++... +..++...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHH
Confidence 34689999999999999999998753221 112577776544 45666666543
No 420
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.46 E-value=0.13 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|.|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999986
No 421
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.45 E-value=0.35 Score=50.55 Aligned_cols=53 Identities=13% Similarity=0.079 Sum_probs=33.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRS 265 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~ 265 (946)
...++.|+|++|+|||||++.++....... =..++|+.... ...++.+.+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHHHH
Confidence 346899999999999999999987432211 11355665433 444555554443
No 422
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.44 E-value=0.15 Score=52.94 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++|.|+|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 368999999999999999999873
No 423
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.44 E-value=0.13 Score=52.76 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999986
No 424
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.44 E-value=0.74 Score=51.15 Aligned_cols=54 Identities=15% Similarity=0.042 Sum_probs=37.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSF 266 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l 266 (946)
...++.|.|.+|+||||+|..++.+.... .=..++|++.. .+..++...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 34689999999999999999998753221 11357777665 35667777766544
No 425
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.44 E-value=0.13 Score=50.79 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 426
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.43 E-value=0.11 Score=51.19 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+++|+|+.|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 427
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.39 E-value=0.14 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|.|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 428
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.35 E-value=0.13 Score=52.43 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|.|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999986
No 429
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.33 E-value=0.13 Score=51.21 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 430
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.32 E-value=0.14 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
++|.|+|+.|+||||||+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 431
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.31 E-value=0.15 Score=51.03 Aligned_cols=25 Identities=28% Similarity=0.108 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
....+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999987
No 432
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.26 E-value=0.25 Score=54.76 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=30.8
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCH
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDV 255 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 255 (946)
....+++|+|..|+|||||++.++.-.+. ....+++...+.+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~---~~G~V~l~g~D~~r~ 334 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQ---QGKSVMLAAGDTFRA 334 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEECCCTTCH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhh---cCCeEEEecCcccch
Confidence 35689999999999999999999863221 134555554555543
No 433
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.26 E-value=0.14 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|.|||||.+.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999997
No 434
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.25 E-value=0.14 Score=51.23 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+++|+|+.|.|||||.+.++.-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 435
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.24 E-value=0.15 Score=52.42 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|.|||||++.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999997
No 436
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.24 E-value=0.14 Score=52.27 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|.|||||++.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999986
No 437
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.23 E-value=0.14 Score=51.88 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=21.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|.|||||++.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999986
No 438
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.20 E-value=0.14 Score=52.59 Aligned_cols=24 Identities=42% Similarity=0.510 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|+.|.|||||++.++.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999986
No 439
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.16 E-value=0.14 Score=51.31 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=21.3
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...|.|.|++|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999873
No 440
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.08 E-value=0.16 Score=55.35 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=54.2
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccc--------ccCC-ceEEEEeCCCC-CHHHHHHHHHHH
Q 043855 196 IVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVR--------DHFD-LKAWTCVSDDF-DVVRLIKVILRS 265 (946)
Q Consensus 196 l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~~~~-~~~~~~~~il~~ 265 (946)
.++.|..-. +-.-++|.|.+|+|||+|+.++++..... ++=+ ..+++-+.+.. .+.++..++.+.
T Consensus 137 aID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~ 211 (464)
T 3gqb_B 137 TIDVMNTLV-----RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERT 211 (464)
T ss_dssp HHHTTSCCB-----TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHT
T ss_pred eeecccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhc
Confidence 455554432 33456899999999999999998854331 1111 45666676553 344555544331
Q ss_pred --hcC-----CCCCCcccHHH----HHHHHHHHh---CCceEEEEEcCC
Q 043855 266 --FVA-----DPNVDNRDLIL----LQLQLKKQL---SGKKFLFVLDDV 300 (946)
Q Consensus 266 --l~~-----~~~~~~~~~~~----~~~~l~~~l---~~kr~LlVlDdv 300 (946)
+.. ....++..... ....+.+++ +++..|+++||+
T Consensus 212 g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 212 GALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp SGGGGEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred ccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 000 00001111111 122244444 378999999998
No 441
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.07 E-value=0.15 Score=49.29 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.4
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 442
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.02 E-value=0.58 Score=48.65 Aligned_cols=24 Identities=38% Similarity=0.325 Sum_probs=21.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..++.++|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 589999999999999999999863
No 443
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.00 E-value=0.2 Score=51.29 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
....++.+.|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3568899999999999999999985
No 444
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.96 E-value=0.15 Score=52.24 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=21.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|.|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999986
No 445
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.95 E-value=0.17 Score=53.32 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...++.|+|.+|+||||++..++.-
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999863
No 446
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.95 E-value=0.24 Score=54.66 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=54.0
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHH-HHHhccccccccCC-ceEEEEeCCCC-CHHHHHHHHHHHhcC---
Q 043855 195 EIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLA-QLVYNDDRVRDHFD-LKAWTCVSDDF-DVVRLIKVILRSFVA--- 268 (946)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~il~~l~~--- 268 (946)
+.++.|..- ++-.-++|+|.+|+|||+|| ..+.+.. .-+ ..+++-+++.. .+.++.+++.+.=..
T Consensus 164 raID~l~Pi-----grGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rt 234 (515)
T 2r9v_A 164 KAIDSMIPI-----GRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYT 234 (515)
T ss_dssp HHHHHHSCE-----ETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGE
T ss_pred ccccccccc-----ccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCccee
Confidence 446666543 23456789999999999995 5777732 234 34677777764 345555555432100
Q ss_pred ----CCCCCcccHHHH----HHHHHHHh--CCceEEEEEcCC
Q 043855 269 ----DPNVDNRDLILL----QLQLKKQL--SGKKFLFVLDDV 300 (946)
Q Consensus 269 ----~~~~~~~~~~~~----~~~l~~~l--~~kr~LlVlDdv 300 (946)
....++...... ...+.+++ +++..|+++||+
T Consensus 235 vvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 235 TVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 011011111111 11233333 578999999998
No 447
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.95 E-value=0.18 Score=51.50 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|+.|+|||||++.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 347999999999999999999886
No 448
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.93 E-value=0.15 Score=53.07 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 447899999999999999999986
No 449
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.91 E-value=0.19 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999987
No 450
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.88 E-value=0.15 Score=51.54 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|.|||||.+.++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36899999999999999999986
No 451
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.83 E-value=0.15 Score=48.95 Aligned_cols=22 Identities=50% Similarity=0.549 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 452
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.83 E-value=0.2 Score=47.06 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=20.8
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.73 E-value=0.16 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 454
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.72 E-value=0.16 Score=51.61 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.1
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..+++|+|+.|.|||||.+.++.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999986
No 455
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.67 E-value=0.16 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
-.+++|+|+.|.|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36899999999999999999986
No 456
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.63 E-value=0.45 Score=61.72 Aligned_cols=86 Identities=20% Similarity=0.074 Sum_probs=57.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CcccHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV----DNRDLILLQLQLK 285 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 285 (946)
..+++.|.|++|+||||||.+++.... ..=..++|++....++... ++.++..... ...+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 457999999999999999999987432 2223688988888776542 4455443221 2345566655555
Q ss_pred HHh-CCceEEEEEcCCCC
Q 043855 286 KQL-SGKKFLFVLDDVWN 302 (946)
Q Consensus 286 ~~l-~~kr~LlVlDdv~~ 302 (946)
... +.+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 444 24556999999853
No 457
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=89.60 E-value=0.31 Score=53.10 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=54.7
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCC----ceEEEEeCCCC-CHHHHHHHHHHHhcC--
Q 043855 196 IVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFD----LKAWTCVSDDF-DVVRLIKVILRSFVA-- 268 (946)
Q Consensus 196 l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~----~~~wv~~~~~~-~~~~~~~~il~~l~~-- 268 (946)
.++.|..-. +-.-++|.|.+|+|||+|+.++.+.... +-+ ..+++-+.+.. .+.++.+++.+.=..
T Consensus 141 aID~l~pig-----rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~r 213 (465)
T 3vr4_D 141 AIDHLNTLV-----RGQKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDR 213 (465)
T ss_dssp HHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGG
T ss_pred EEecccccc-----cCCEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccc
Confidence 455554432 2344689999999999999999985332 222 55666676653 355555554432100
Q ss_pred -----CCCCCcccHHH----HHHHHHHHh---CCceEEEEEcCC
Q 043855 269 -----DPNVDNRDLIL----LQLQLKKQL---SGKKFLFVLDDV 300 (946)
Q Consensus 269 -----~~~~~~~~~~~----~~~~l~~~l---~~kr~LlVlDdv 300 (946)
....++..... ....+.+++ +++..|+++||+
T Consensus 214 tvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 214 SVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 00001111111 112244444 378999999998
No 458
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.50 E-value=0.23 Score=50.16 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=28.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCC
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSD 251 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 251 (946)
...++.|.|++|+||||||.+++.... ..=..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 346899999999999999988875321 1123567777554
No 459
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.46 E-value=0.2 Score=55.25 Aligned_cols=42 Identities=33% Similarity=0.363 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 193 KKEIVELLLRDDLM---NDGGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 193 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.++|.+++.....+ ..+...+|.|+|.+|+||||++..++..
T Consensus 78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35566655432110 1134579999999999999999998874
No 460
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.44 E-value=0.09 Score=54.74 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=18.7
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
+..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 461
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.37 E-value=0.51 Score=46.40 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.7
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...|.|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999999999874
No 462
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.27 E-value=0.2 Score=52.67 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=28.9
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCC
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDF 253 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 253 (946)
...++|+|+|-||+||||+|..++.-....+ ..++-|+.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 4568999999999999999988876322111 235556655433
No 463
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.26 E-value=0.22 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.-|.|+|.+|+|||||++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999874
No 464
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.15 E-value=0.7 Score=51.43 Aligned_cols=58 Identities=10% Similarity=0.163 Sum_probs=40.6
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCC-HHHHHHH
Q 043855 195 EIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFD-VVRLIKV 261 (946)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~ 261 (946)
++++.|..- ++-.-++|.|..|+|||+|++++.+. .+-+..+++-+.+..+ +.+++++
T Consensus 216 rvID~l~Pi-----gkGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 216 RVIDTFFPQ-----AKGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHHSCE-----ETTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred chhhccCCc-----ccCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 456777543 24467899999999999999999863 2235678888887764 4444444
No 465
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.11 E-value=0.2 Score=51.46 Aligned_cols=21 Identities=38% Similarity=0.735 Sum_probs=19.6
Q ss_pred EEEEEecCCChHHHHHHHHhc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999996
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.11 E-value=0.2 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.9
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+.|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999999873
No 467
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.05 E-value=0.17 Score=52.87 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|+.|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 346899999999999999999986
No 468
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.04 E-value=0.22 Score=51.92 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=21.6
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+++|+|.+|+||||++..++.-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999999874
No 469
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.01 E-value=0.57 Score=51.53 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHH-HHHhccccccccCC-ceEEEEeCCCCC-HHHHHHHHHHHhcCCC-
Q 043855 195 EIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLA-QLVYNDDRVRDHFD-LKAWTCVSDDFD-VVRLIKVILRSFVADP- 270 (946)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~il~~l~~~~- 270 (946)
+.++.|..-. +-.-++|.|..|+|||+|| ..+.+. .+-+ .++++-+++..+ +.++.+++.+.=..+.
T Consensus 151 kaID~l~Pig-----rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~t 221 (513)
T 3oaa_A 151 KAVDSMIPIG-----RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANT 221 (513)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTE
T ss_pred eeeccccccc-----cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccce
Confidence 3466665432 3356789999999999996 567762 1223 357788887643 4555555433211110
Q ss_pred ------CCCcccHH--------HHHHHHHHHhCCceEEEEEcCC
Q 043855 271 ------NVDNRDLI--------LLQLQLKKQLSGKKFLFVLDDV 300 (946)
Q Consensus 271 ------~~~~~~~~--------~~~~~l~~~l~~kr~LlVlDdv 300 (946)
..++.... .+++.+++ +++..||++||+
T Consensus 222 vvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 222 IVVVATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 00111111 22333443 589999999998
No 470
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.94 E-value=0.2 Score=51.80 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=21.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
..++.|+|++|+|||||+..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999886
No 471
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.88 E-value=0.25 Score=54.16 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=56.1
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhcccccccc--CCceEEEEeCCCC-CHHHHHHHHHHHhcCC--
Q 043855 195 EIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDDRVRDH--FDLKAWTCVSDDF-DVVRLIKVILRSFVAD-- 269 (946)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~-~~~~~~~~il~~l~~~-- 269 (946)
+.++.|..-. +-.-++|+|.+|+|||+|+.+++++...... =+..+++-+.+.. .+.++..++...=..+
T Consensus 141 r~ID~l~pig-----rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rt 215 (469)
T 2c61_A 141 STIDGTNTLV-----RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERA 215 (469)
T ss_dssp HHHHTTSCCB-----TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGE
T ss_pred Eeeeeeeccc-----cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccce
Confidence 3456554432 3345678899999999999999985443211 1345666666653 3555565555431110
Q ss_pred -----CCCCcccHH----HHHHHHHHHhC---CceEEEEEcCC
Q 043855 270 -----PNVDNRDLI----LLQLQLKKQLS---GKKFLFVLDDV 300 (946)
Q Consensus 270 -----~~~~~~~~~----~~~~~l~~~l~---~kr~LlVlDdv 300 (946)
...++.... .....+.++++ ++..|+++||+
T Consensus 216 vvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 216 VVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 000111111 11122334443 78999999997
No 472
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.88 E-value=0.21 Score=48.60 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999875
No 473
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.86 E-value=0.3 Score=46.83 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
....|+|+|.+|+|||||.+.+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 474
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.83 E-value=0.21 Score=53.88 Aligned_cols=24 Identities=29% Similarity=0.152 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|++|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456999999999999999999996
No 475
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.76 E-value=0.21 Score=51.03 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+++|+|+.|.|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 476
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.76 E-value=0.45 Score=60.90 Aligned_cols=82 Identities=21% Similarity=0.129 Sum_probs=0.0
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC----CcccHHHHHHHHHHH
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV----DNRDLILLQLQLKKQ 287 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~~~ 287 (946)
+++.|.|.+|+||||||.+++. .....=..++|++....++... ++.++.+... ...+.+++...+...
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Q ss_pred h-CCceEEEEEcCC
Q 043855 288 L-SGKKFLFVLDDV 300 (946)
Q Consensus 288 l-~~kr~LlVlDdv 300 (946)
. +.+.-+||+|-+
T Consensus 457 v~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHTCCSEEEESCS
T ss_pred HHhcCCCEEEECCH
No 477
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.69 E-value=0.22 Score=51.62 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...+++|+|+.|.|||||.+.++.-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3468999999999999999999863
No 478
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.60 E-value=0.64 Score=51.41 Aligned_cols=101 Identities=20% Similarity=0.259 Sum_probs=54.8
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCChHHHH-HHHHhccccc----cccCC-ceEEEEeCCCC-CHHHHHHHHHHHhc
Q 043855 195 EIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTL-AQLVYNDDRV----RDHFD-LKAWTCVSDDF-DVVRLIKVILRSFV 267 (946)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtL-a~~v~~~~~~----~~~F~-~~~wv~~~~~~-~~~~~~~~il~~l~ 267 (946)
+.++.|..-. +-.-++|+|.+|+|||+| ...+.+.... ..+-+ ..+++-+++.. .+.++.+++...=.
T Consensus 151 raID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~ 225 (510)
T 2ck3_A 151 KAVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADA 225 (510)
T ss_dssp HHHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTC
T ss_pred eeeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCC
Confidence 4566665442 345678999999999999 4567763221 01233 36777787764 34455555543110
Q ss_pred C-------CCCCCcccHHHH----HHHHHHHh--CCceEEEEEcCC
Q 043855 268 A-------DPNVDNRDLILL----QLQLKKQL--SGKKFLFVLDDV 300 (946)
Q Consensus 268 ~-------~~~~~~~~~~~~----~~~l~~~l--~~kr~LlVlDdv 300 (946)
. ....++...... ...+.+++ +++..|+++||+
T Consensus 226 m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 226 MKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 0 001011111111 11223333 578999999998
No 479
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.59 E-value=0.22 Score=46.32 Aligned_cols=22 Identities=36% Similarity=0.681 Sum_probs=19.8
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
-|.|+|.+|+|||||++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 480
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.59 E-value=0.23 Score=49.91 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999999986
No 481
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.58 E-value=1.2 Score=49.25 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=35.3
Q ss_pred CcEEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHH
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRS 265 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~ 265 (946)
...++.|.|.+|+||||+|.+++.+...++ ..++|++... +..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSS--CTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCC--CHHHHHHHHHHH
Confidence 346899999999999999999987533221 2466665543 455566655544
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.54 E-value=0.25 Score=49.81 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
...|.|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 483
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=88.52 E-value=0.33 Score=45.93 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
+...|.|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999874
No 484
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.49 E-value=0.25 Score=54.55 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=48.0
Q ss_pred cEEEEEEecCCChHHHHH-HHHhccccccccCC-ceEEEEeCCCCC-HHHHHHHHHHHhcC-------CCCCCcc-----
Q 043855 211 FSVLPIVGMGGLGKTTLA-QLVYNDDRVRDHFD-LKAWTCVSDDFD-VVRLIKVILRSFVA-------DPNVDNR----- 275 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~il~~l~~-------~~~~~~~----- 275 (946)
-.-++|+|.+|+|||+|| ..+.+.. . -+ ..+++-+++..+ +.++.+++...=.. ....++.
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 456789999999999995 5777742 2 34 346777777543 33444443321000 0000111
Q ss_pred ---cHHHHHHHHHHHhCCceEEEEEcCC
Q 043855 276 ---DLILLQLQLKKQLSGKKFLFVLDDV 300 (946)
Q Consensus 276 ---~~~~~~~~l~~~l~~kr~LlVlDdv 300 (946)
..-.+++.++. +++..|+++||+
T Consensus 239 a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 11223444544 589999999998
No 485
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.46 E-value=0.5 Score=46.65 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCChHHHHHHHHhcc
Q 043855 209 GGFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 209 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.....|.|.|+.|+||||+++.+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999974
No 486
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.21 E-value=0.46 Score=46.69 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=54.2
Q ss_pred EEEEEEecCCChHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC---------CcccHHHHHH
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTCVSDDFDVVRLIKVILRSFVADPNV---------DNRDLILLQL 282 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~---------~~~~~~~~~~ 282 (946)
-.|.+.|.||+||||+|..+..... ...++ +..+.+...-+.... ..+..+...+.. ...+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~-~~G~~-V~v~d~D~q~~~~~~--al~~gl~~~~~~~~~~~~~~~~e~~l~~--- 79 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL-RQGVR-VMAGVVETHGRAETE--ALLNGLPQQPLLRTEYRGMTLEEMDLDA--- 79 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-HTTCC-EEEEECCCTTCHHHH--HHHTTSCBCCCEEEEETTEEEEECCHHH---
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH-HCCCC-EEEEEeCCCCChhHH--HHhcCccccCcceeecCCcccccccHHH---
Confidence 3478899999999999888886322 22233 445555544333321 122222211100 0122222
Q ss_pred HHHHHhCCceEEEEEcCCCCCC------hhhHhhhhccCCCCCCCcEEEEEcCCh
Q 043855 283 QLKKQLSGKKFLFVLDDVWNES------YNDWVELSHPFEAGAPGSKIIVTTRNQ 331 (946)
Q Consensus 283 ~l~~~l~~kr~LlVlDdv~~~~------~~~w~~~~~~l~~~~~gs~iivTtR~~ 331 (946)
.+ ..+.=++|+|+.-... ..-|..+...++ .|-.|+.|+.-.
T Consensus 80 ~L----~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 80 LL----KAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp HH----HHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred HH----hcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 12 2245589999874321 124555544332 455688777644
No 487
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.13 E-value=0.27 Score=47.04 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
.+.+|+|+.|.|||||+++++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999999975
No 488
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.05 E-value=0.26 Score=52.51 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=21.2
Q ss_pred cEEEEEEecCCChHHHHHHHHhc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
-.+++|+|+.|.|||||.+.++-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 36899999999999999999996
No 489
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.98 E-value=0.26 Score=53.00 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.7
Q ss_pred EEEEEEecCCChHHHHHHHHhc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
++|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 6899999999999999999987
No 490
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.93 E-value=0.24 Score=52.32 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..+++.|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999999964
No 491
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=87.83 E-value=0.27 Score=52.50 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCChHHHHHHHHhc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYN 233 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~ 233 (946)
...+++|+|+.|.|||||.+.+..
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 346899999999999999999985
No 492
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=87.81 E-value=0.26 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.3
Q ss_pred EEEEEecCCChHHHHHHHHhcc
Q 043855 213 VLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 213 vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4689999999999999998753
No 493
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.78 E-value=0.32 Score=45.44 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=20.8
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.--|.|+|.+|+|||||++.+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999999874
No 494
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.69 E-value=0.36 Score=50.51 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCChHHHHHHHHhccc
Q 043855 193 KKEIVELLLRDDLMNDGGFSVLPIVGMGGLGKTTLAQLVYNDD 235 (946)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 235 (946)
++++.+.+. -.+++|+|+.|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---------GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 455666552 2588999999999999999998 53
No 495
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.69 E-value=0.26 Score=47.38 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.4
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999865
No 496
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.65 E-value=0.36 Score=45.44 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.0
Q ss_pred cEEEEEEecCCChHHHHHHHHhcc
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.--|.|+|.+|+|||||++.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356889999999999999999874
No 497
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.60 E-value=0.42 Score=45.15 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
..--|.|+|.+|+|||||++.+.+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999999864
No 498
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.59 E-value=0.27 Score=45.81 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.5
Q ss_pred EEEEEEecCCChHHHHHHHHhcc
Q 043855 212 SVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 212 ~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
.-|.|+|.+|+|||||.+.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46789999999999999999865
No 499
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.58 E-value=0.59 Score=46.66 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=26.5
Q ss_pred cEEEEEEecCCChHHHHHHHHhccccccccCCceEEEE
Q 043855 211 FSVLPIVGMGGLGKTTLAQLVYNDDRVRDHFDLKAWTC 248 (946)
Q Consensus 211 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 248 (946)
...|.|.|+.|+||||+++.+...... ..+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeec
Confidence 468999999999999999999874322 2344344333
No 500
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.55 E-value=0.36 Score=46.06 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCChHHHHHHHHhcc
Q 043855 210 GFSVLPIVGMGGLGKTTLAQLVYND 234 (946)
Q Consensus 210 ~~~vi~I~G~~GiGKTtLa~~v~~~ 234 (946)
....|.|+|.+|+|||||.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4467889999999999999999875
Done!