BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043856
         (275 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 32.3 bits (72), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 205 NKLKALPDYLLQTTALQELSIYSCENLEELPIP-----EDRRTTDIPRLSSLRI---GLK 256
           N L+ALP  +     L+ELSI +C  L ELP P            +  L SLR+   G++
Sbjct: 137 NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

Query: 257 VLPDYLLRTTMLQELSI 273
            LP  +     L+ L I
Sbjct: 197 SLPASIANLQNLKSLKI 213



 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 58/162 (35%), Gaps = 24/162 (14%)

Query: 90  LPKWLTSLTNLRDLKLVFCENCEHXXXXXXXXXXXXXXRDLKSVKRVGNEFLGIEEISED 149
           LP  + SL  LR+L +  C                   + L +++ +  E+ GI  +   
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201

Query: 150 DPXXXXXXXXVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA 209
                     +     LKSL+I+   L             I  +P+L  L +  C  L+ 
Sbjct: 202 ----------IANLQNLKSLKIRNSPL-------SALGPAIHHLPKLEELDLRGCTALRN 244

Query: 210 LPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSL 251
            P        L+ L +  C NL  LP+       DI RL+ L
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPL-------DIHRLTQL 279


>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
           Binding Of A Tri-Acylated Lipopeptide
          Length = 520

 Score = 27.7 bits (60), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 194 PRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRL 248
           PR+  L + S NK+K++P  +++  ALQEL++ S   L+ +P     R T + ++
Sbjct: 421 PRIKVLDLHS-NKIKSIPKQVVKLEALQELNVAS-NQLKSVPDGIFDRLTSLQKI 473


>pdb|2OQC|A Chain A, Crystal Structure Of Penicillin V Acylase From Bacillus
           Subtilis
 pdb|2OQC|B Chain B, Crystal Structure Of Penicillin V Acylase From Bacillus
           Subtilis
          Length = 327

 Score = 27.7 bits (60), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 9/69 (13%)

Query: 165 KLKSLEI--KELDLLE-----EWNYRITRKENISIMPRLSSLKV--GSCNKLKALPDYLL 215
           K++SL I  K+LDLL+      W        N++I PR   LKV       +   PD++ 
Sbjct: 120 KIRSLTIVEKKLDLLDTVLPLHWILSDRTGRNLTIEPRADGLKVYDNQPGVMTNSPDFIW 179

Query: 216 QTTALQELS 224
             T LQ+ +
Sbjct: 180 HVTNLQQYT 188


>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
           Inducing Factor (Aif)
          Length = 514

 Score = 27.7 bits (60), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 128 RDLKSVKRVGNEFLGIE-EISEDDPXXXXXXXXVTAFPKLKSLEIKELDLLEEWNYRITR 186
           R++KS+  +G  FLG E   +            +  FP+  ++     + L  W     R
Sbjct: 196 REVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVR 255

Query: 187 KENISIMPRLSSLKVG-SCNKL 207
           +E + +MP      VG S  KL
Sbjct: 256 REGVKVMPNAIVQSVGVSSGKL 277


>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
          Length = 493

 Score = 27.7 bits (60), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 128 RDLKSVKRVGNEFLGIE-EISEDDPXXXXXXXXVTAFPKLKSLEIKELDLLEEWNYRITR 186
           R++KS+  +G  FLG E   +            +  FP+  ++     + L  W     R
Sbjct: 178 REVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVR 237

Query: 187 KENISIMPRLSSLKVG-SCNKL 207
           +E + +MP      VG S  KL
Sbjct: 238 REGVKVMPNAIVQSVGVSSGKL 259


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.139    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,465,680
Number of Sequences: 62578
Number of extensions: 162703
Number of successful extensions: 311
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 10
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)