Query 043856
Match_columns 275
No_of_seqs 352 out of 2252
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:56:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.6 1.3E-15 2.9E-20 153.7 13.1 196 63-274 622-877 (1153)
2 PLN03210 Resistant to P. syrin 99.6 5.1E-15 1.1E-19 149.5 11.4 193 74-274 610-854 (1153)
3 PLN00113 leucine-rich repeat r 99.6 4.8E-15 1E-19 148.0 9.7 79 192-274 282-364 (968)
4 PLN00113 leucine-rich repeat r 99.6 1.3E-14 2.8E-19 145.0 10.7 198 67-275 85-293 (968)
5 KOG0444 Cytoskeletal regulator 99.3 3.1E-14 6.8E-19 129.5 -3.9 71 67-139 95-168 (1255)
6 KOG0617 Ras suppressor protein 99.3 3.5E-14 7.7E-19 110.1 -4.3 161 71-265 29-195 (264)
7 KOG0444 Cytoskeletal regulator 99.2 2.8E-13 6.2E-18 123.3 -3.8 207 61-275 112-371 (1255)
8 KOG0617 Ras suppressor protein 99.2 4.6E-13 1E-17 104.0 -4.9 145 96-275 31-182 (264)
9 KOG0472 Leucine-rich repeat pr 99.1 9.1E-14 2E-18 120.5 -12.0 76 192-274 226-305 (565)
10 KOG0472 Leucine-rich repeat pr 99.1 8E-13 1.7E-17 114.7 -6.5 196 65-274 81-283 (565)
11 PRK15387 E3 ubiquitin-protein 99.0 2.4E-09 5.2E-14 102.9 10.8 190 62-275 232-454 (788)
12 KOG4194 Membrane glycoprotein 99.0 2.7E-10 5.9E-15 103.4 3.5 70 68-139 95-167 (873)
13 KOG0618 Serine/threonine phosp 99.0 2.5E-11 5.4E-16 114.9 -3.5 108 154-275 373-485 (1081)
14 PRK15370 E3 ubiquitin-protein 99.0 1.2E-09 2.6E-14 105.2 7.1 187 65-274 191-396 (754)
15 KOG4194 Membrane glycoprotein 98.9 2.5E-10 5.3E-15 103.7 1.8 203 62-274 159-424 (873)
16 PRK15370 E3 ubiquitin-protein 98.9 2.8E-09 6E-14 102.7 8.2 175 75-275 178-376 (754)
17 PRK15387 E3 ubiquitin-protein 98.9 1E-08 2.2E-13 98.8 9.2 55 76-137 223-278 (788)
18 cd00116 LRR_RI Leucine-rich re 98.6 6.3E-09 1.4E-13 90.9 -0.2 68 64-131 70-148 (319)
19 cd00116 LRR_RI Leucine-rich re 98.6 1.1E-08 2.5E-13 89.3 1.3 67 64-131 40-119 (319)
20 PF14580 LRR_9: Leucine-rich r 98.6 2.6E-08 5.7E-13 79.3 2.8 134 65-227 10-149 (175)
21 KOG0532 Leucine-rich repeat (L 98.5 1.5E-09 3.2E-14 98.3 -6.4 76 62-139 85-161 (722)
22 KOG3207 Beta-tubulin folding c 98.5 1.1E-08 2.5E-13 90.0 -0.9 87 161-254 219-309 (505)
23 COG4886 Leucine-rich repeat (L 98.5 8.8E-08 1.9E-12 86.5 3.8 169 70-274 111-285 (394)
24 KOG0618 Serine/threonine phosp 98.5 1.4E-08 3E-13 96.7 -1.6 197 61-274 77-318 (1081)
25 PRK15386 type III secretion pr 98.4 5.1E-07 1.1E-11 80.6 6.6 140 68-228 45-187 (426)
26 PF14580 LRR_9: Leucine-rich r 98.4 2.1E-07 4.5E-12 74.2 3.1 128 96-254 17-148 (175)
27 KOG4658 Apoptotic ATPase [Sign 98.3 3.3E-07 7.1E-12 90.0 2.7 65 71-136 567-634 (889)
28 KOG0532 Leucine-rich repeat (L 98.2 1.6E-07 3.5E-12 85.4 -1.4 144 60-236 106-251 (722)
29 KOG3207 Beta-tubulin folding c 98.2 3E-07 6.5E-12 81.2 -0.2 174 72-274 118-309 (505)
30 COG4886 Leucine-rich repeat (L 98.2 7E-07 1.5E-11 80.7 1.5 76 62-139 126-204 (394)
31 KOG4237 Extracellular matrix p 98.1 2.6E-07 5.6E-12 80.7 -2.0 55 62-116 77-133 (498)
32 PRK15386 type III secretion pr 98.1 1E-05 2.3E-10 72.4 8.1 32 76-109 73-105 (426)
33 KOG1259 Nischarin, modulator o 98.1 3E-07 6.5E-12 77.9 -1.8 35 74-108 181-224 (490)
34 PF13855 LRR_8: Leucine rich r 98.0 9.4E-06 2E-10 53.0 4.5 58 164-228 1-59 (61)
35 KOG4658 Apoptotic ATPase [Sign 98.0 3.7E-06 7.9E-11 82.8 3.3 82 162-254 569-650 (889)
36 KOG2120 SCF ubiquitin ligase, 97.9 9.5E-07 2.1E-11 74.7 -1.9 63 161-228 310-373 (419)
37 KOG1259 Nischarin, modulator o 97.9 1.3E-06 2.8E-11 74.1 -1.4 56 193-253 351-406 (490)
38 KOG2120 SCF ubiquitin ligase, 97.9 5.7E-07 1.2E-11 76.1 -3.6 160 70-254 205-371 (419)
39 KOG4237 Extracellular matrix p 97.8 1.6E-06 3.5E-11 75.9 -2.5 77 62-141 56-136 (498)
40 PF13855 LRR_8: Leucine rich r 97.8 2.7E-05 5.8E-10 50.8 3.6 56 194-254 1-57 (61)
41 KOG0531 Protein phosphatase 1, 97.8 6.1E-06 1.3E-10 75.1 0.5 111 65-204 85-196 (414)
42 PLN03150 hypothetical protein; 97.8 5.3E-05 1.1E-09 72.5 6.8 110 100-235 420-532 (623)
43 PF12799 LRR_4: Leucine Rich r 97.7 4.7E-05 1E-09 46.1 3.3 41 75-116 1-41 (44)
44 PF12799 LRR_4: Leucine Rich r 97.7 5.1E-05 1.1E-09 46.0 3.2 40 194-235 1-40 (44)
45 KOG3665 ZYG-1-like serine/thre 97.7 1.3E-05 2.8E-10 77.0 0.6 104 162-275 146-259 (699)
46 PLN03150 hypothetical protein; 97.6 0.00014 3E-09 69.7 6.8 71 160-236 438-508 (623)
47 KOG1859 Leucine-rich repeat pr 97.5 4.6E-06 1E-10 78.3 -4.7 175 61-254 73-262 (1096)
48 KOG1909 Ran GTPase-activating 97.5 3.3E-05 7.3E-10 66.7 0.5 204 61-274 44-278 (382)
49 KOG1909 Ran GTPase-activating 97.1 4.2E-05 9.1E-10 66.1 -2.3 193 62-275 79-307 (382)
50 KOG3665 ZYG-1-like serine/thre 97.1 0.00024 5.1E-09 68.5 1.7 100 164-275 122-229 (699)
51 KOG0531 Protein phosphatase 1, 97.0 6E-05 1.3E-09 68.7 -2.8 125 73-229 70-197 (414)
52 KOG2982 Uncharacterized conser 96.8 0.0012 2.6E-08 56.3 3.7 69 62-130 84-156 (418)
53 KOG1644 U2-associated snRNP A' 96.6 0.0044 9.6E-08 50.0 5.5 103 97-228 41-150 (233)
54 KOG2982 Uncharacterized conser 96.3 0.0014 3E-08 56.0 1.0 57 73-130 69-131 (418)
55 KOG2123 Uncharacterized conser 95.7 0.00058 1.3E-08 57.7 -3.9 106 74-201 18-124 (388)
56 KOG1859 Leucine-rich repeat pr 95.7 0.00057 1.2E-08 64.7 -4.6 70 64-136 176-247 (1096)
57 KOG3864 Uncharacterized conser 95.5 0.0017 3.8E-08 52.3 -1.8 69 160-232 121-190 (221)
58 KOG4341 F-box protein containi 95.4 0.007 1.5E-07 53.9 1.3 167 66-253 285-459 (483)
59 KOG2739 Leucine-rich acidic nu 94.9 0.014 3.1E-07 48.8 1.8 35 193-229 90-127 (260)
60 KOG1947 Leucine rich repeat pr 94.9 0.0032 6.9E-08 58.0 -2.3 131 74-226 187-329 (482)
61 KOG2739 Leucine-rich acidic nu 94.9 0.013 2.8E-07 49.1 1.4 95 163-272 42-149 (260)
62 KOG1644 U2-associated snRNP A' 94.7 0.041 8.8E-07 44.6 3.7 64 68-131 57-124 (233)
63 PF00560 LRR_1: Leucine Rich R 94.5 0.023 5E-07 28.6 1.4 20 195-215 1-20 (22)
64 PF13504 LRR_7: Leucine rich r 94.2 0.034 7.4E-07 26.1 1.4 16 195-211 2-17 (17)
65 KOG4341 F-box protein containi 94.1 0.015 3.3E-07 51.8 0.2 133 96-253 292-433 (483)
66 PF00560 LRR_1: Leucine Rich R 94.1 0.029 6.3E-07 28.3 1.1 21 76-96 1-21 (22)
67 KOG2123 Uncharacterized conser 94.0 0.0017 3.8E-08 54.9 -5.6 35 192-228 39-73 (388)
68 KOG1947 Leucine rich repeat pr 93.6 0.012 2.6E-07 54.2 -1.4 116 96-231 186-308 (482)
69 KOG4579 Leucine-rich repeat (L 93.6 0.007 1.5E-07 46.1 -2.4 81 162-254 51-131 (177)
70 KOG4579 Leucine-rich repeat (L 93.0 0.015 3.2E-07 44.4 -1.5 71 67-139 45-118 (177)
71 COG5238 RNA1 Ran GTPase-activa 92.5 0.12 2.6E-06 44.0 3.0 47 62-108 79-130 (388)
72 COG5238 RNA1 Ran GTPase-activa 91.8 0.044 9.4E-07 46.5 -0.3 184 60-254 43-250 (388)
73 KOG3864 Uncharacterized conser 91.6 0.033 7.2E-07 45.0 -1.1 60 192-254 123-184 (221)
74 smart00370 LRR Leucine-rich re 84.4 0.68 1.5E-05 24.0 1.4 19 194-213 2-20 (26)
75 smart00369 LRR_TYP Leucine-ric 84.4 0.68 1.5E-05 24.0 1.4 19 194-213 2-20 (26)
76 PF13306 LRR_5: Leucine rich r 83.5 7 0.00015 28.6 7.2 31 193-225 34-65 (129)
77 smart00367 LRR_CC Leucine-rich 83.4 0.74 1.6E-05 24.0 1.3 15 194-208 2-16 (26)
78 PF13306 LRR_5: Leucine rich r 73.1 14 0.0003 26.9 6.1 77 190-273 8-88 (129)
79 smart00364 LRR_BAC Leucine-ric 62.9 4.8 0.0001 21.2 1.1 18 194-212 2-19 (26)
80 PF03066 Nucleoplasmin: Nucleo 56.2 6.8 0.00015 30.3 1.5 12 6-17 100-111 (149)
81 smart00365 LRR_SD22 Leucine-ri 53.1 13 0.00027 19.5 1.7 10 98-107 2-11 (26)
82 PF13516 LRR_6: Leucine Rich r 49.8 9.8 0.00021 19.0 1.0 12 218-229 2-13 (24)
83 PF10446 DUF2457: Protein of u 48.4 9.3 0.0002 34.7 1.2 7 122-128 206-212 (458)
84 KOG3130 Uncharacterized conser 43.0 11 0.00024 33.7 0.9 6 13-18 264-269 (514)
85 KOG3763 mRNA export factor TAP 41.1 6.7 0.00014 36.8 -0.8 62 73-134 216-284 (585)
86 PF12253 CAF1A: Chromatin asse 41.0 16 0.00035 24.8 1.3 7 20-26 48-54 (77)
87 PF04931 DNA_pol_phi: DNA poly 37.4 41 0.00089 33.6 3.9 7 66-72 707-713 (784)
88 KOG3130 Uncharacterized conser 27.2 35 0.00076 30.7 1.4 14 15-28 269-282 (514)
89 KOG4264 Nucleo-cytoplasmic pro 24.7 52 0.0011 30.8 2.0 14 4-17 56-69 (694)
90 PF08595 RXT2_N: RXT2-like, N- 24.2 32 0.00069 26.6 0.5 7 71-77 94-100 (149)
91 KOG3763 mRNA export factor TAP 21.6 32 0.00069 32.5 0.1 85 162-252 216-307 (585)
92 smart00368 LRR_RI Leucine rich 21.0 72 0.0016 16.6 1.4 11 76-86 3-13 (28)
93 KOG0473 Leucine-rich repeat pr 20.8 3.7 8.1E-05 34.4 -5.4 90 70-181 37-128 (326)
94 KOG1999 RNA polymerase II tran 20.3 52 0.0011 33.1 1.2 23 8-30 68-90 (1024)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.64 E-value=1.3e-15 Score=153.72 Aligned_cols=196 Identities=22% Similarity=0.329 Sum_probs=106.7
Q ss_pred hHHHHHHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCC-CCCcc-cceeeccccccccccCcc
Q 043856 63 KDEQLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 63 ~~~~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
.+..+|+++..+++|+.|+++++.... +| .++.+++|++|++++|..+..+|. ++.++ |+.|++++|..++.+|..
T Consensus 622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred cccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 344556666666677777776654333 44 355666666666666655555553 45555 666666666555555543
Q ss_pred ccccccccCCCCCCCC-----------------------CCCC-------------------------------CCCCCc
Q 043856 140 FLGIEEISEDDPSSSS-----------------------SSSS-------------------------------VTAFPK 165 (275)
Q Consensus 140 ~~~~~~~~~~~~~~~~-----------------------~~~~-------------------------------l~~l~~ 165 (275)
. ....+..+.+..+. ..+. ...+++
T Consensus 701 i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 701 I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcccc
Confidence 2 11111100000000 0000 001234
Q ss_pred ccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCC
Q 043856 166 LKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDI 245 (275)
Q Consensus 166 L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l 245 (275)
|+.|++++|+.+..+|..+ ..+++|+.|++.+|++++.+|..+ ++++|+.|++++|..+..+|. ..
T Consensus 780 L~~L~Ls~n~~l~~lP~si------~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-------~~ 845 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSI------QNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-------IS 845 (1153)
T ss_pred chheeCCCCCCccccChhh------hCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-------cc
Confidence 5555555554444444322 256777777777777777777655 467777777777766665554 13
Q ss_pred Ccccceecc---ccccchhhcCCCCccEEEec
Q 043856 246 PRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 246 ~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
++|+.|+++ ++.+|.+++.+++|+.|+++
T Consensus 846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~ 877 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMN 877 (1153)
T ss_pred cccCEeECCCCCCccChHHHhcCCCCCEEECC
Confidence 466666664 66677777777777777664
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.59 E-value=5.1e-15 Score=149.49 Aligned_cols=193 Identities=25% Similarity=0.339 Sum_probs=120.0
Q ss_pred CCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 74 PLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
+.+|+.|++.++....+|..+..+++|+.|++++|..++.+|.+..++ |+.|++++|..+..+|..+.....+..+.+.
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 456777777666655566667788899999999888888888888888 9999999998888888765444333333332
Q ss_pred CCC---CCCCCCCCCcccEeeccccccccccccc--------ccccc--c------------------------------
Q 043856 153 SSS---SSSSVTAFPKLKSLEIKELDLLEEWNYR--------ITRKE--N------------------------------ 189 (275)
Q Consensus 153 ~~~---~~~~l~~l~~L~~L~l~~~~~l~~l~~~--------i~~~~--~------------------------------ 189 (275)
.+. ..+....+++|+.|.+.+|..++.++.. +.... .
T Consensus 690 ~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 690 RCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred CCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccccccc
Confidence 211 1111125667888888777665544320 00000 0
Q ss_pred ----cCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc----ccccchh
Q 043856 190 ----ISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG----LKVLPDY 261 (275)
Q Consensus 190 ----~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~----l~~lp~~ 261 (275)
...+++|+.|++++|+.+..+|..++++++|+.|+|++|+.++.+|. .+ .+++|+.|+++ ++.+|..
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~----~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT----GI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC----CC-CccccCEEECCCCCcccccccc
Confidence 00124566666666666666777777777777777777777776665 22 46677777775 4444432
Q ss_pred hcCCCCccEEEec
Q 043856 262 LLRTTMLQELSIS 274 (275)
Q Consensus 262 l~~L~~L~~L~l~ 274 (275)
.++|+.|+++
T Consensus 845 ---~~nL~~L~Ls 854 (1153)
T PLN03210 845 ---STNISDLNLS 854 (1153)
T ss_pred ---ccccCEeECC
Confidence 3466666664
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.58 E-value=4.8e-15 Score=147.98 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=49.4
Q ss_pred CCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---c-cccchhhcCCCC
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---L-KVLPDYLLRTTM 267 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l-~~lp~~l~~L~~ 267 (275)
.+++|+.|++++|.....+|..+.++++|+.|++.+|.....+|. .+..+++|+.|+++ + ..+|..++.+++
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~ 357 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV----ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357 (968)
T ss_pred hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh----hHhcCCCCCEEECcCCCCcCcCChHHhCCCC
Confidence 456666666666632234565566666666666666654444444 45567777777775 3 356777777777
Q ss_pred ccEEEec
Q 043856 268 LQELSIS 274 (275)
Q Consensus 268 L~~L~l~ 274 (275)
|+.|+++
T Consensus 358 L~~L~Ls 364 (968)
T PLN00113 358 LTVLDLS 364 (968)
T ss_pred CcEEECC
Confidence 8777775
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.56 E-value=1.3e-14 Score=144.96 Aligned_cols=198 Identities=18% Similarity=0.193 Sum_probs=131.9
Q ss_pred HHHhcCCCCCCCeEEecccCCcc-cccccC-CCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcccccc
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNI-LPKWLT-SLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~-~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
++..+..+++|+.|++++|.... +|..+. .+++|++|++++|+....+|. +.++ |++|+++++.....+|..+...
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcC
Confidence 46677888999999999887653 777665 889999999998765555553 5677 8888888776434555554333
Q ss_pred ccccCCCCCC----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCC
Q 043856 144 EEISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTA 219 (275)
Q Consensus 144 ~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 219 (275)
..+..+.++. ......+..+++|+.|++.++.-...++.. +..+++|+.|++.+|.-...+|..++++++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE------LGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH------HcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 3332222221 112233556677777777665433333322 225778888888877433457777788888
Q ss_pred ccEEEEecCCCCccCCccccccCCCCCcccceecc----ccccchhhcCCCCccEEEecC
Q 043856 220 LQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG----LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 220 L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~----l~~lp~~l~~L~~L~~L~l~~ 275 (275)
|++|++++|.....+|. .+..+++|++|+++ .+.+|..+.++++|+.|++++
T Consensus 238 L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPS----SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred CCEEECcCceeccccCh----hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence 88888887755455665 56678888888885 346777888888888888753
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.35 E-value=3.1e-14 Score=129.46 Aligned_cols=71 Identities=18% Similarity=0.165 Sum_probs=35.8
Q ss_pred HHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcc
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
||..+..+..|..|+++.++....|..+..-.++-.|+|++ +.+..+|. +-+|. |-+|+++++. ++.+|..
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ 168 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ 168 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccch-hhhcCHH
Confidence 44444445555555555555444555555555555555555 44555553 22344 5556665432 5555543
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.32 E-value=3.5e-14 Score=110.14 Aligned_cols=161 Identities=29% Similarity=0.387 Sum_probs=100.4
Q ss_pred cCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccccccccC
Q 043856 71 LQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
+..+.+...|.++.+....+|..|..+.+|+.|++++ +.++.+| .+..+| |+.|++. ++.+..+|.+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvg-mnrl~~lprg--------- 97 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVG-MNRLNILPRG--------- 97 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecc-hhhhhcCccc---------
Confidence 3445566677777776666777777777777777776 5556565 366677 7777776 4556666665
Q ss_pred CCCCCCCCCCCCCCCCcccEeecccccccc-ccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEec
Q 043856 149 DDPSSSSSSSSVTAFPKLKSLEIKELDLLE-EWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYS 227 (275)
Q Consensus 149 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~-~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 227 (275)
++.||.|+.|++....--+ .+|. ++..+..|+.|+++++ ..+-+|..++++++|+.|.+++
T Consensus 98 -----------fgs~p~levldltynnl~e~~lpg------nff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 98 -----------FGSFPALEVLDLTYNNLNENSLPG------NFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRD 159 (264)
T ss_pred -----------cCCCchhhhhhccccccccccCCc------chhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeecc
Confidence 3467777777776432111 2221 2234566777777766 5666777777777777777776
Q ss_pred CCCCccCCccccccCCCCCcccceecc---ccccchhhcCC
Q 043856 228 CENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRT 265 (275)
Q Consensus 228 c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L 265 (275)
+ .+-++|. .++.+..|+.|.|. +..+|..++++
T Consensus 160 n-dll~lpk----eig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 160 N-DLLSLPK----EIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred C-chhhCcH----HHHHHHHHHHHhcccceeeecChhhhhh
Confidence 5 4445666 56667777777764 66666655544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.24 E-value=2.8e-13 Score=123.33 Aligned_cols=207 Identities=20% Similarity=0.277 Sum_probs=122.4
Q ss_pred hhhHHHHHHhcCCCCCCCeEEecccCCcccccccC-CCCCCcEEeeecCCCCCcCCC-CCCcc-cceeeccccc------
Q 043856 61 NEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLT-SLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLK------ 131 (275)
Q Consensus 61 ~~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~L~l~~~~------ 131 (275)
.+...++|..+..-+++-.|++++++..++|..+. +++-|-.|+|+. +.+..+|+ +..|. |+.|.+++++
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence 35566777777777777777777777766776554 666666667766 45555553 33344 4444444332
Q ss_pred -------------------cccccCccccccccccCCCCCCC---CCCCCCCCCCcccEeeccccccccccccccc----
Q 043856 132 -------------------SVKRVGNEFLGIEEISEDDPSSS---SSSSSVTAFPKLKSLEIKELDLLEEWNYRIT---- 185 (275)
Q Consensus 132 -------------------~l~~l~~~~~~~~~~~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~---- 185 (275)
.+..+|.+.-+...++.+.+++. .....+-.+++|+.|.+++.. ++++...++
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~ 269 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWEN 269 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhh
Confidence 12223333222222222222211 122344566777777776532 222211000
Q ss_pred -------------cccccCCCCcccEEeEccCcccC--cCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccc
Q 043856 186 -------------RKENISIMPRLSSLKVGSCNKLK--ALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSS 250 (275)
Q Consensus 186 -------------~~~~~~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~ 250 (275)
-+...+.+++|+.|++.++ ++. .+|.+++.+.+|+.+...++ .++-.|. .+.++++|+.
T Consensus 270 lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN-~LElVPE----glcRC~kL~k 343 (1255)
T KOG0444|consen 270 LETLNLSRNQLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANN-KLELVPE----GLCRCVKLQK 343 (1255)
T ss_pred hhhhccccchhccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhcc-ccccCch----hhhhhHHHHH
Confidence 0112234566666666655 443 47777777777777766553 6666676 6888999999
Q ss_pred eecc---ccccchhhcCCCCccEEEecC
Q 043856 251 LRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 251 L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
|.++ +-.+|++|.-|+.|+.|++.+
T Consensus 344 L~L~~NrLiTLPeaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 344 LKLDHNRLITLPEAIHLLPDLKVLDLRE 371 (1255)
T ss_pred hcccccceeechhhhhhcCCcceeeccC
Confidence 9996 778999999999999999863
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=4.6e-13 Score=103.97 Aligned_cols=145 Identities=25% Similarity=0.396 Sum_probs=119.8
Q ss_pred CCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccc
Q 043856 96 SLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKE 173 (275)
Q Consensus 96 ~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 173 (275)
.+++.+.|.++. +++..+| .+..+. |+.|+++++ .++.+|.. +..+|.|+.|.+.
T Consensus 31 ~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nn-qie~lp~~--------------------issl~klr~lnvg- 87 (264)
T KOG0617|consen 31 NMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNN-QIEELPTS--------------------ISSLPKLRILNVG- 87 (264)
T ss_pred chhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccc-hhhhcChh--------------------hhhchhhhheecc-
Confidence 778888899999 5555554 688888 999999965 48899876 6689999999886
Q ss_pred cccccccccccccccccCCCCcccEEeEccCcccC--cCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccce
Q 043856 174 LDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLK--ALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSL 251 (275)
Q Consensus 174 ~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L 251 (275)
+..+..+|.. ++.||.|+.|++.++ ++. ++|..+..++.|+.|.++++ .++.+|. .++.+++|+.|
T Consensus 88 mnrl~~lprg------fgs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dn-dfe~lp~----dvg~lt~lqil 155 (264)
T KOG0617|consen 88 MNRLNILPRG------FGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDN-DFEILPP----DVGKLTNLQIL 155 (264)
T ss_pred hhhhhcCccc------cCCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCC-CcccCCh----hhhhhcceeEE
Confidence 4556666653 338999999999997 564 38988888999999999886 7888888 78899999999
Q ss_pred ecc---ccccchhhcCCCCccEEEecC
Q 043856 252 RIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 252 ~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.++ +-++|..++.|+.|++|.|.+
T Consensus 156 ~lrdndll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 156 SLRDNDLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred eeccCchhhCcHHHHHHHHHHHHhccc
Confidence 986 788999999999999998864
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.13 E-value=9.1e-14 Score=120.50 Aligned_cols=76 Identities=25% Similarity=0.312 Sum_probs=53.2
Q ss_pred CCCcccEEeEccCcccCcCccccC-CCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCC
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLL-QTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTM 267 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~-~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~ 267 (275)
.+..|+.|.++.+ .++.+|+.++ ++++|..|+++++ ++++.|. .+.-+.+|.+|+++ ++.+|..+|++ .
T Consensus 226 gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN-klke~Pd----e~clLrsL~rLDlSNN~is~Lp~sLgnl-h 298 (565)
T KOG0472|consen 226 GCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPD----EICLLRSLERLDLSNNDISSLPYSLGNL-H 298 (565)
T ss_pred ccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc-ccccCch----HHHHhhhhhhhcccCCccccCCcccccc-e
Confidence 3455666665554 4555665554 6788888888875 6777777 66677888888886 88888888888 7
Q ss_pred ccEEEec
Q 043856 268 LQELSIS 274 (275)
Q Consensus 268 L~~L~l~ 274 (275)
|+.|-+.
T Consensus 299 L~~L~le 305 (565)
T KOG0472|consen 299 LKFLALE 305 (565)
T ss_pred eeehhhc
Confidence 7776553
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.12 E-value=8e-13 Score=114.69 Aligned_cols=196 Identities=23% Similarity=0.279 Sum_probs=80.2
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcccccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
..+|.+++.+..++.|+++.+....+|..++.+.+|+.++++.+......+.++.+- |..++..++ .+..+|.+++..
T Consensus 81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~ 159 (565)
T KOG0472|consen 81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNL 159 (565)
T ss_pred hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHH
Confidence 344555555555555555555444455555555555555555533322223344444 444444322 244444333222
Q ss_pred ccccCCCCC---CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCc
Q 043856 144 EEISEDDPS---SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTAL 220 (275)
Q Consensus 144 ~~~~~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L 220 (275)
..+..+... .....+....+..|++|+... ..++.+|..++ .+.+|..|++..+ ++..+| +++.+..|
T Consensus 160 ~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg------~l~~L~~LyL~~N-ki~~lP-ef~gcs~L 230 (565)
T KOG0472|consen 160 SKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELG------GLESLELLYLRRN-KIRFLP-EFPGCSLL 230 (565)
T ss_pred HHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhc------chhhhHHHHhhhc-ccccCC-CCCccHHH
Confidence 111110000 000000011233444444322 12334443222 3444555555444 444454 34445555
Q ss_pred cEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 221 QELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 221 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
++|++..+ .++.+|.+ ...++++|..|+++ ++++|..+..+.+|.+|++|
T Consensus 231 ~Elh~g~N-~i~~lpae---~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 231 KELHVGEN-QIEMLPAE---HLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred HHHHhccc-HHHhhHHH---HhcccccceeeeccccccccCchHHHHhhhhhhhccc
Confidence 55554332 34444431 12244555555553 55555555555555555544
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.00 E-value=2.4e-09 Score=102.93 Aligned_cols=190 Identities=19% Similarity=0.218 Sum_probs=106.2
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccCCcccccccCC-----------------CCCCcEEeeecCCCCCcCCCCCCcc-cc
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTS-----------------LTNLRDLKLVFCENCEHLPPLGKLP-LE 123 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~-----------------l~~L~~L~L~~c~~~~~lp~l~~L~-L~ 123 (275)
+.+..+|.. +++|++|++++|....+|....+ +++|+.|++++ +.+..+|. .++ |+
T Consensus 232 N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~-N~Lt~LP~--~p~~L~ 305 (788)
T PRK15387 232 NNLTSLPAL---PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG-NQLTSLPV--LPPGLQ 305 (788)
T ss_pred CcCCCCCCC---CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcC-Cccccccc--cccccc
Confidence 334445663 46778888887777666653221 13455556655 34455553 235 89
Q ss_pred eeeccccccccccCccccccccccCCCCCCCCCCCCCCCC-CcccEeeccccccccccccc---c-----ccc--ccc-C
Q 043856 124 KLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAF-PKLKSLEIKELDLLEEWNYR---I-----TRK--ENI-S 191 (275)
Q Consensus 124 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~l~~~---i-----~~~--~~~-~ 191 (275)
.|+++++ .+..+|.... .+..+.+..... ..+..+ ++|+.|+++++ .+..+|.. + ... ..+ .
T Consensus 306 ~LdLS~N-~L~~Lp~lp~---~L~~L~Ls~N~L-~~LP~lp~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L~~LP~ 379 (788)
T PRK15387 306 ELSVSDN-QLASLPALPS---ELCKLWAYNNQL-TSLPTLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPA 379 (788)
T ss_pred eeECCCC-ccccCCCCcc---cccccccccCcc-ccccccccccceEecCCC-ccCCCCCCCcccceehhhccccccCcc
Confidence 9999876 4666654211 111111111000 011112 26777777653 33333320 0 000 000 0
Q ss_pred CCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCc
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTML 268 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L 268 (275)
..++|+.|++++| +++.+|.. .++|+.|++++| .+..+|. . ..+|+.|+++ ++.+|..+.++++|
T Consensus 380 l~~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N-~LssIP~----l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L 447 (788)
T PRK15387 380 LPSGLKELIVSGN-RLTSLPVL---PSELKELMVSGN-RLTSLPM----L---PSGLLSLSVYRNQLTRLPESLIHLSSE 447 (788)
T ss_pred cccccceEEecCC-cccCCCCc---ccCCCEEEccCC-cCCCCCc----c---hhhhhhhhhccCcccccChHHhhccCC
Confidence 1246777777776 56667653 357788888776 4666664 1 3467788885 88999999999999
Q ss_pred cEEEecC
Q 043856 269 QELSISE 275 (275)
Q Consensus 269 ~~L~l~~ 275 (275)
+.|++++
T Consensus 448 ~~LdLs~ 454 (788)
T PRK15387 448 TTVNLEG 454 (788)
T ss_pred CeEECCC
Confidence 9999874
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.98 E-value=2.7e-10 Score=103.37 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=53.0
Q ss_pred HHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
++.+..+++|+.+++..|....+|....-..+|+.|+|.. +.+.++.. +..+| |+.|+++.+ .+..++..
T Consensus 95 ~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~ 167 (873)
T KOG4194|consen 95 FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLDLSRN-LISEIPKP 167 (873)
T ss_pred HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhhhhhc-hhhcccCC
Confidence 6677788999999998888777888777777899999988 55555542 66677 888888855 36666654
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.98 E-value=2.5e-11 Score=114.88 Aligned_cols=108 Identities=26% Similarity=0.367 Sum_probs=70.4
Q ss_pred CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCcc
Q 043856 154 SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEE 233 (275)
Q Consensus 154 ~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~ 233 (275)
..+++.+.+|++||.|++++. .+..++. .....++.|+.|.++++ +++.+|..+.+++.|++|...++ .+..
T Consensus 373 d~c~p~l~~~~hLKVLhLsyN-rL~~fpa-----s~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN-~l~~ 444 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYN-RLNSFPA-----SKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSN-QLLS 444 (1081)
T ss_pred ccchhhhccccceeeeeeccc-ccccCCH-----HHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCC-ceee
Confidence 345666777888888888753 3444443 12225777788888887 67778877777777777765443 5556
Q ss_pred CCccccccCCCCCcccceecc---cc--ccchhhcCCCCccEEEecC
Q 043856 234 LPIPEDRRTTDIPRLSSLRIG---LK--VLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 234 l~~~~~~~~~~l~~L~~L~l~---l~--~lp~~l~~L~~L~~L~l~~ 275 (275)
+|. +..++.|+.++++ ++ .+|..... ++|++|++++
T Consensus 445 fPe-----~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSG 485 (1081)
T KOG0618|consen 445 FPE-----LAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSG 485 (1081)
T ss_pred chh-----hhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccC
Confidence 664 5678888888886 22 33433322 6888888764
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.96 E-value=1.2e-09 Score=105.17 Aligned_cols=187 Identities=20% Similarity=0.282 Sum_probs=97.7
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc--cceeeccccccccccCccccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP--LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~--L~~L~l~~~~~l~~l~~~~~~ 142 (275)
..+|..+ +++|+.|++++|....+|..+. ++|++|++++| .+..+|. .++ |+.|++++|. +..+|..+..
T Consensus 191 tsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~--~l~~~L~~L~Ls~N~-L~~LP~~l~s 262 (754)
T PRK15370 191 TTIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPA--TLPDTIQEMELSINR-ITELPERLPS 262 (754)
T ss_pred CcCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCCh--hhhccccEEECcCCc-cCcCChhHhC
Confidence 3455554 2478899998888777887654 58888888874 4566664 233 7888887664 5666644321
Q ss_pred cccccCCCCCCCCCCCCC-CCCCcccEeeccccccccccccccc---------ccc----ccCCCCcccEEeEccCcccC
Q 043856 143 IEEISEDDPSSSSSSSSV-TAFPKLKSLEIKELDLLEEWNYRIT---------RKE----NISIMPRLSSLKVGSCNKLK 208 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~i~---------~~~----~~~~l~~L~~L~l~~c~~l~ 208 (275)
.+..+.++........ .-+++|+.|+++++ ++..++..+. ... .....++|+.|.+.+| .++
T Consensus 263 --~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt 338 (754)
T PRK15370 263 --ALQSLDLFHNKISCLPENLPEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALT 338 (754)
T ss_pred --CCCEEECcCCccCccccccCCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCC-ccc
Confidence 1111111100000000 01236777777654 3333332100 000 0002345666666666 466
Q ss_pred cCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 209 ALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 209 ~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
.+|..+. ++|+.|++++| .+..+|. .+ .++|++|+++ +..+|..+. ++|+.|+++
T Consensus 339 ~LP~~l~--~sL~~L~Ls~N-~L~~LP~----~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs 396 (754)
T PRK15370 339 SLPASLP--PELQVLDVSKN-QITVLPE----TL--PPTITTLDVSRNALTNLPENLP--AALQIMQAS 396 (754)
T ss_pred cCChhhc--CcccEEECCCC-CCCcCCh----hh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhc
Confidence 6665443 56777777665 3445554 22 2566777774 566665543 245544443
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.95 E-value=2.5e-10 Score=103.65 Aligned_cols=203 Identities=21% Similarity=0.304 Sum_probs=108.0
Q ss_pred hhHHHHHHhc-CCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeecccccccccc
Q 043856 62 EKDEQLLEAL-QPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRV 136 (275)
Q Consensus 62 ~~~~~l~~~l-~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l 136 (275)
+.+.+++..- ..-.++++|++++|....+ -..+..|.+|..|.|+. +.++.+|. +.+|| |+.|++..+. ++.+
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~-iriv 236 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNR-IRIV 236 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccc-eeee
Confidence 3444554433 3336899999999887663 34456778888888888 66777774 55677 8888776443 3333
Q ss_pred -CccccccccccCCCCC------------------------C----CCCCCCCCCCCcccEeeccccccccccccccccc
Q 043856 137 -GNEFLGIEEISEDDPS------------------------S----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRK 187 (275)
Q Consensus 137 -~~~~~~~~~~~~~~~~------------------------~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~ 187 (275)
...|.+...+.++.++ . ....-.+.+++.|+.|+++... +..+..
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~----- 310 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHI----- 310 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-hheeec-----
Confidence 3333333333332221 0 0111223445556666655421 111110
Q ss_pred cccCCCCcccEEeEccCcccCcCccc-cC------------------------CCCCccEEEEecCCCCccCCccccccC
Q 043856 188 ENISIMPRLSSLKVGSCNKLKALPDY-LL------------------------QTTALQELSIYSCENLEELPIPEDRRT 242 (275)
Q Consensus 188 ~~~~~l~~L~~L~l~~c~~l~~lp~~-l~------------------------~l~~L~~L~l~~c~~l~~l~~~~~~~~ 242 (275)
..-...++|+.|+++++ ++++++.+ +. .+.+|++|+++.+. +.-........+
T Consensus 311 d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa~~f 388 (873)
T KOG4194|consen 311 DSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAAVAF 388 (873)
T ss_pred chhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecchhhh
Confidence 00013567777777665 56655432 12 23445555554432 111111111234
Q ss_pred CCCCcccceecc---ccccch-hhcCCCCccEEEec
Q 043856 243 TDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSIS 274 (275)
Q Consensus 243 ~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~ 274 (275)
..|++|++|.+. ++.+|. ++..+.+|+.|++.
T Consensus 389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred ccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence 557777777774 777774 66777778777764
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.92 E-value=2.8e-09 Score=102.73 Aligned_cols=175 Identities=20% Similarity=0.238 Sum_probs=100.2
Q ss_pred CCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCCC
Q 043856 75 LNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSS 153 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 153 (275)
.+...|+++++....+|..+. ++|+.|++++ +.+..+|.. ..+ |+.|++++|. ++.+|..+.. .+..+.++.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~-N~LtsLP~~-l~~nL~~L~Ls~N~-LtsLP~~l~~--~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDN-NELKSLPEN-LQGNIKTLYANSNQ-LTSIPATLPD--TIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecC-CCCCcCChh-hccCCCEEECCCCc-cccCChhhhc--cccEEECcC
Confidence 467899999887777887664 5899999998 567777752 235 9999999774 7788764321 111111111
Q ss_pred CCCCCC-CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccC-----------------
Q 043856 154 SSSSSS-VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLL----------------- 215 (275)
Q Consensus 154 ~~~~~~-l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~----------------- 215 (275)
...... .....+|+.|++++ .++..++.. .+++|+.|++++| +++.+|..+.
T Consensus 251 N~L~~LP~~l~s~L~~L~Ls~-N~L~~LP~~--------l~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 251 NRITELPERLPSALQSLDLFH-NKISCLPEN--------LPEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALP 320 (754)
T ss_pred CccCcCChhHhCCCCEEECcC-CccCccccc--------cCCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCC
Confidence 100000 00123678888874 345555431 1346777777776 5666654332
Q ss_pred --CCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 216 --QTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 216 --~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
-.++|+.|++.+| .+..+|. .+ .++|+.|+++ +..+|..+. ++|+.|+|++
T Consensus 321 ~~l~~sL~~L~Ls~N-~Lt~LP~----~l--~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~ 376 (754)
T PRK15370 321 ETLPPGLKTLEAGEN-ALTSLPA----SL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSR 376 (754)
T ss_pred ccccccceeccccCC-ccccCCh----hh--cCcccEEECCCCCCCcCChhhc--CCcCEEECCC
Confidence 0134455554444 2333443 11 2567777775 666666553 5677777753
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.85 E-value=1e-08 Score=98.75 Aligned_cols=55 Identities=24% Similarity=0.231 Sum_probs=29.1
Q ss_pred CCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccC
Q 043856 76 NVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVG 137 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~ 137 (275)
+|+.|.+.+|....+|. ..++|++|++++ +.++.+|.+ .+ |+.|+++++. +..+|
T Consensus 223 ~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~-N~LtsLP~l--p~sL~~L~Ls~N~-L~~Lp 278 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA---LPPELRTLEVSG-NQLTSLPVL--PPGLLELSIFSNP-LTHLP 278 (788)
T ss_pred CCCEEEccCCcCCCCCC---CCCCCcEEEecC-CccCcccCc--ccccceeeccCCc-hhhhh
Confidence 55666666555554553 245666666666 345555531 23 6666665543 44443
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.61 E-value=6.3e-09 Score=90.90 Aligned_cols=68 Identities=29% Similarity=0.209 Sum_probs=40.7
Q ss_pred HHHHHHhcCCCCCCCeEEecccCCcc-cccccCCC---CCCcEEeeecCCCCC-cCC----CCCCc-c-cceeeccccc
Q 043856 64 DEQLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSL---TNLRDLKLVFCENCE-HLP----PLGKL-P-LEKLELRDLK 131 (275)
Q Consensus 64 ~~~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l---~~L~~L~L~~c~~~~-~lp----~l~~L-~-L~~L~l~~~~ 131 (275)
...++..+..+++|++|++++|.... .+..+..+ ++|++|++++|.... ..+ .+..+ + |+.|++++|.
T Consensus 70 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 70 LQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 34566677777788888887776542 33344333 348888888764321 111 13345 5 7888887765
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.61 E-value=1.1e-08 Score=89.25 Aligned_cols=67 Identities=22% Similarity=0.186 Sum_probs=47.5
Q ss_pred HHHHHHhcCCCCCCCeEEecccCCcc-------cccccCCCCCCcEEeeecCCCCCcCCC-----CCCcc-cceeecccc
Q 043856 64 DEQLLEALQPPLNVEKLWIIFYGGNI-------LPKWLTSLTNLRDLKLVFCENCEHLPP-----LGKLP-LEKLELRDL 130 (275)
Q Consensus 64 ~~~l~~~l~~l~~L~~L~l~~~~~~~-------lp~~l~~l~~L~~L~L~~c~~~~~lp~-----l~~L~-L~~L~l~~~ 130 (275)
...+++.+...++|++|+++++.... ++..+..+++|++|++++|......+. ... + |++|++++|
T Consensus 40 ~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~ 118 (319)
T cd00116 40 AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNN 118 (319)
T ss_pred HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCC
Confidence 45678888888899999998765441 344566788999999999765432221 123 6 899999877
Q ss_pred c
Q 043856 131 K 131 (275)
Q Consensus 131 ~ 131 (275)
.
T Consensus 119 ~ 119 (319)
T cd00116 119 G 119 (319)
T ss_pred c
Confidence 5
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=2.6e-08 Score=79.29 Aligned_cols=134 Identities=20% Similarity=0.255 Sum_probs=42.7
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcccccccC-CCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNILPKWLT-SLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~ 142 (275)
+.++... .+.++++|+++++....+ ..++ .+.+|+.|++++ +.++.+..+..++ |+.|+++++. ++.++..+
T Consensus 10 ~~~~~~~-n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~-N~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l-- 83 (175)
T PF14580_consen 10 EQIAQYN-NPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSN-NQITKLEGLPGLPRLKTLDLSNNR-ISSISEGL-- 83 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TT-S--S--TT----TT--EEE--SS----S-CHHH--
T ss_pred ccccccc-cccccccccccccccccc-cchhhhhcCCCEEECCC-CCCccccCccChhhhhhcccCCCC-CCccccch--
Confidence 3344433 344789999999987754 4566 688999999999 6777788888888 9999998664 76665321
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc----cccCCCC
Q 043856 143 IEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP----DYLLQTT 218 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp----~~l~~l~ 218 (275)
...+|+|+.|++.+.. +..+.. ......+|+|+.|++.++|- ..-+ .-+..+|
T Consensus 84 -----------------~~~lp~L~~L~L~~N~-I~~l~~----l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP 140 (175)
T PF14580_consen 84 -----------------DKNLPNLQELYLSNNK-ISDLNE----LEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLP 140 (175)
T ss_dssp -----------------HHH-TT--EEE-TTS----SCCC----CGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-T
T ss_pred -----------------HHhCCcCCEEECcCCc-CCChHH----hHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcC
Confidence 1257888888887532 322221 11222578888888888763 3222 1244577
Q ss_pred CccEEEEec
Q 043856 219 ALQELSIYS 227 (275)
Q Consensus 219 ~L~~L~l~~ 227 (275)
+|+.|+-..
T Consensus 141 ~Lk~LD~~~ 149 (175)
T PF14580_consen 141 SLKVLDGQD 149 (175)
T ss_dssp T-SEETTEE
T ss_pred hhheeCCEE
Confidence 777776443
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.53 E-value=1.5e-09 Score=98.30 Aligned_cols=76 Identities=24% Similarity=0.285 Sum_probs=53.3
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcccceeeccccccccccCcc
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLPLEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~L~~L~l~~~~~l~~l~~~ 139 (275)
+...++|+.+..+..|..+.++.|....+|..+..+..|.+|+|+. +.+..+| .+..|||+.|-++++ +++.+|.+
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lpLkvli~sNN-kl~~lp~~ 161 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLPLKVLIVSNN-KLTSLPEE 161 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCcceeEEEecC-ccccCCcc
Confidence 3445677777777777777777666666777788888888888887 4555555 366667777777754 47777766
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.1e-08 Score=89.99 Aligned_cols=87 Identities=21% Similarity=0.293 Sum_probs=47.5
Q ss_pred CCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc--cccCCCCCccEEEEecCC--CCccCCc
Q 043856 161 TAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP--DYLLQTTALQELSIYSCE--NLEELPI 236 (275)
Q Consensus 161 ~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~c~--~l~~l~~ 236 (275)
..||+|+.|++.....+..... ....+..|+.|+|++++ +..++ ...+.+|.|+.|.++.|. .+...+.
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~------~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~ 291 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKAT------STKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV 291 (505)
T ss_pred HhCCcHHHhhhhcccccceecc------hhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccCcchhcCCCc
Confidence 3567777777765532111110 11145677788887774 44444 346778888888777763 2222222
Q ss_pred cccccCCCCCcccceecc
Q 043856 237 PEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 237 ~~~~~~~~l~~L~~L~l~ 254 (275)
+.......+++|++|++.
T Consensus 292 ~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 292 ESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred cchhhhcccccceeeecc
Confidence 112223457888888885
No 23
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.49 E-value=8.8e-08 Score=86.50 Aligned_cols=169 Identities=24% Similarity=0.342 Sum_probs=100.3
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCC-CCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccccccc
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLT-NLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEI 146 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~-~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~ 146 (275)
.+.+.+.++.|.+.++....+|.....+. +|+.|++++ +.+..+| .++.++ |+.|.+++++ +..++..
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~------- 181 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND-LSDLPKL------- 181 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCch-hhhhhhh-------
Confidence 34445778888888877777887777774 888888888 5666664 677788 8888888765 6666643
Q ss_pred cCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEe
Q 043856 147 SEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIY 226 (275)
Q Consensus 147 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 226 (275)
....++|+.|++++. .+..++..+. ....|+.|.+.+++ +..++..+.++..+..+.+.
T Consensus 182 -------------~~~~~~L~~L~ls~N-~i~~l~~~~~------~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~ 240 (394)
T COG4886 182 -------------LSNLSNLNNLDLSGN-KISDLPPEIE------LLSALEELDLSNNS-IIELLSSLSNLKNLSGLELS 240 (394)
T ss_pred -------------hhhhhhhhheeccCC-ccccCchhhh------hhhhhhhhhhcCCc-ceecchhhhhcccccccccC
Confidence 224566667766653 2333332110 22336666666552 33344455555555555544
Q ss_pred cCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 227 SCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 227 ~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
++ .+..++. .+..++++++|+++ +..++. ++.+.+|+.|+++
T Consensus 241 ~n-~~~~~~~----~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s 285 (394)
T COG4886 241 NN-KLEDLPE----SIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLS 285 (394)
T ss_pred Cc-eeeeccc----hhccccccceecccccccccccc-ccccCccCEEecc
Confidence 33 2222222 34456666666664 555543 5666666666654
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.49 E-value=1.4e-08 Score=96.71 Aligned_cols=197 Identities=20% Similarity=0.247 Sum_probs=116.8
Q ss_pred hhhHHHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCc
Q 043856 61 NEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGN 138 (275)
Q Consensus 61 ~~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~ 138 (275)
.+.+..+|.+...+.+|++|.|.++....+|..+..+.+|++|+++++++ ..+| .+..+. +..+..+++..+..++.
T Consensus 77 ~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~ 155 (1081)
T KOG0618|consen 77 RNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQ 155 (1081)
T ss_pred hhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhcc
Confidence 46677888888899999999998888877999999999999999999544 4444 333333 44444443322222221
Q ss_pred cc-------------------cccccccCCCCCC-CCCCCCCCCCCcccEe--------------------ecccccccc
Q 043856 139 EF-------------------LGIEEISEDDPSS-SSSSSSVTAFPKLKSL--------------------EIKELDLLE 178 (275)
Q Consensus 139 ~~-------------------~~~~~~~~~~~~~-~~~~~~l~~l~~L~~L--------------------~l~~~~~l~ 178 (275)
.+ ..... .+.+.. ...-..+..+++|+.| +...++-.+
T Consensus 156 ~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~ 233 (1081)
T KOG0618|consen 156 TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT 233 (1081)
T ss_pred ccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCccee
Confidence 11 00000 000000 0000112223333333 322222111
Q ss_pred ccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---c
Q 043856 179 EWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---L 255 (275)
Q Consensus 179 ~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l 255 (275)
.. ....-.+|++++++.+ +++.+|.+++.+.+|+.|.+..+ .+..+|. ++..+.+|++|.+. +
T Consensus 234 ~~--------~~p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~----ri~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 234 LD--------VHPVPLNLQYLDISHN-NLSNLPEWIGACANLEALNANHN-RLVALPL----RISRITSLVSLSAAYNEL 299 (1081)
T ss_pred ec--------cccccccceeeecchh-hhhcchHHHHhcccceEecccch-hHHhhHH----HHhhhhhHHHHHhhhhhh
Confidence 00 0112346788888776 67788888888888888888765 5567776 66677788887774 7
Q ss_pred cccchhhcCCCCccEEEec
Q 043856 256 KVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 256 ~~lp~~l~~L~~L~~L~l~ 274 (275)
+.+|...+.+++|+.|++.
T Consensus 300 ~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 300 EYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred hhCCCcccccceeeeeeeh
Confidence 7777777778888888764
No 25
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.42 E-value=5.1e-07 Score=80.60 Aligned_cols=140 Identities=24% Similarity=0.369 Sum_probs=85.0
Q ss_pred HHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc--cceeeccccccccccCcccccccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP--LEKLELRDLKSVKRVGNEFLGIEE 145 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~--L~~L~l~~~~~l~~l~~~~~~~~~ 145 (275)
...+..+.++++|++++|....+|. --++|++|.+++|..+..+|. .+| |++|.+++|..+..+|..+....
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~--~LP~nLe~L~Ls~Cs~L~sLP~sLe~L~- 118 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPG--SIPEGLEKLTVCHCPEISGLPESVRSLE- 118 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCc--hhhhhhhheEccCcccccccccccceEE-
Confidence 3335556899999999997666882 224699999999999888884 356 99999999977877775432111
Q ss_pred ccCCCCCCCCCCCCCCCCC-cccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEE
Q 043856 146 ISEDDPSSSSSSSSVTAFP-KLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELS 224 (275)
Q Consensus 146 ~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 224 (275)
+. ...+..+..+| +|+.|.+.++....... + . ..-.++|+.|.+.+|..+ .+|..+. .+|+.|.
T Consensus 119 -----L~-~n~~~~L~~LPssLk~L~I~~~n~~~~~~--l--p--~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 119 -----IK-GSATDSIKNVPNGLTSLSINSYNPENQAR--I--D--NLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred -----eC-CCCCcccccCcchHhheeccccccccccc--c--c--cccCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 00 01111233443 46666654332111111 0 0 001257888888888544 3555444 5788888
Q ss_pred EecC
Q 043856 225 IYSC 228 (275)
Q Consensus 225 l~~c 228 (275)
+..+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 7654
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.39 E-value=2.1e-07 Score=74.19 Aligned_cols=128 Identities=22% Similarity=0.285 Sum_probs=44.0
Q ss_pred CCCCCcEEeeecCCCCCcCCCCC-Ccc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccc
Q 043856 96 SLTNLRDLKLVFCENCEHLPPLG-KLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKE 173 (275)
Q Consensus 96 ~l~~L~~L~L~~c~~~~~lp~l~-~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 173 (275)
+..+++.|+|.+ +.+..+..++ .+. |+.|+++++. ++.++. +..+++|+.|++++
T Consensus 17 n~~~~~~L~L~~-n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~---------------------l~~L~~L~~L~L~~ 73 (175)
T PF14580_consen 17 NPVKLRELNLRG-NQISTIENLGATLDKLEVLDLSNNQ-ITKLEG---------------------LPGLPRLKTLDLSN 73 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--TT-------------------------TT--EEE--S
T ss_pred cccccccccccc-cccccccchhhhhcCCCEEECCCCC-CccccC---------------------ccChhhhhhcccCC
Confidence 556789999999 6677777776 477 9999999775 766642 44688999999986
Q ss_pred cccccccccccccccccCCCCcccEEeEccCcccCcCc--cccCCCCCccEEEEecCCCCccCCccccccCCCCCcccce
Q 043856 174 LDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP--DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSL 251 (275)
Q Consensus 174 ~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L 251 (275)
.. +..+...+ ...+|+|+.|+++++ ++..+- ..+..+++|+.|++.+||--.. +.-...-+..+|+|+.|
T Consensus 74 N~-I~~i~~~l-----~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 74 NR-ISSISEGL-----DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp S----S-CHHH-----HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEE
T ss_pred CC-CCccccch-----HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhhee
Confidence 43 33332100 014899999999887 676642 3456789999999998874322 11011124457888888
Q ss_pred ecc
Q 043856 252 RIG 254 (275)
Q Consensus 252 ~l~ 254 (275)
+-.
T Consensus 146 D~~ 148 (175)
T PF14580_consen 146 DGQ 148 (175)
T ss_dssp TTE
T ss_pred CCE
Confidence 753
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.30 E-value=3.3e-07 Score=90.00 Aligned_cols=65 Identities=26% Similarity=0.266 Sum_probs=34.8
Q ss_pred cCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCC-CCCcc-cceeecccccccccc
Q 043856 71 LQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLKSVKRV 136 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~L~l~~~~~l~~l 136 (275)
+..++.|+.|++++|.... +|..|+.|-+|++|++++ ..+..+|. +++|. |.+|++..+..+..+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccc
Confidence 4445566666666544333 666666666666666665 34445552 55555 555555544433333
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.21 E-value=1.6e-07 Score=85.40 Aligned_cols=144 Identities=21% Similarity=0.240 Sum_probs=110.2
Q ss_pred chhhHHHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccC
Q 043856 60 KNEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVG 137 (275)
Q Consensus 60 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~ 137 (275)
+.+.+..+|+.++.+..|.+|+++.++...+|..+..|+ |+.|.+++ ++++.+| .++.++ |..|+.+.|. +..+|
T Consensus 106 y~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slp 182 (722)
T KOG0532|consen 106 YHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLP 182 (722)
T ss_pred HhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhh-hhhch
Confidence 445666789999999999999999999888998886554 89999988 7788887 488667 9999999664 88888
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCC
Q 043856 138 NEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQT 217 (275)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l 217 (275)
.. ++.+.+|+.|.+.... +..++... ..-.|..|+++.+ ++..||..+.+|
T Consensus 183 sq--------------------l~~l~slr~l~vrRn~-l~~lp~El-------~~LpLi~lDfScN-kis~iPv~fr~m 233 (722)
T KOG0532|consen 183 SQ--------------------LGYLTSLRDLNVRRNH-LEDLPEEL-------CSLPLIRLDFSCN-KISYLPVDFRKM 233 (722)
T ss_pred HH--------------------hhhHHHHHHHHHhhhh-hhhCCHHH-------hCCceeeeecccC-ceeecchhhhhh
Confidence 77 5567788888887643 44555322 1235778888654 899999999999
Q ss_pred CCccEEEEecCCCCccCCc
Q 043856 218 TALQELSIYSCENLEELPI 236 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~ 236 (275)
+.|++|.+.++| +++-|.
T Consensus 234 ~~Lq~l~LenNP-LqSPPA 251 (722)
T KOG0532|consen 234 RHLQVLQLENNP-LQSPPA 251 (722)
T ss_pred hhheeeeeccCC-CCCChH
Confidence 999999988765 444443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3e-07 Score=81.22 Aligned_cols=174 Identities=19% Similarity=0.222 Sum_probs=112.1
Q ss_pred CCCCCCCeEEecccCCcccc--cccCCCCCCcEEeeecCCCCCcCC----CCCCcc-cceeeccccccccccCccccccc
Q 043856 72 QPPLNVEKLWIIFYGGNILP--KWLTSLTNLRDLKLVFCENCEHLP----PLGKLP-LEKLELRDLKSVKRVGNEFLGIE 144 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~lp--~~l~~l~~L~~L~L~~c~~~~~lp----~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~ 144 (275)
..+.+|+...+.++.....+ .....|++++.|+|+.+ .+..+. ...+|| |+.|+++.+. +.....+ .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s-~--- 191 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISS-N--- 191 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCCccc-c---
Confidence 35678889999887654333 24558999999999995 333222 245788 9999999764 3221111 0
Q ss_pred cccCCCCCCCCCCCCCCCCCcccEeeccccccc-cccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEE
Q 043856 145 EISEDDPSSSSSSSSVTAFPKLKSLEIKELDLL-EEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQEL 223 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l-~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 223 (275)
....+++|+.|.++.|.-- ..+.. ....||+|+.|++..+..+...-.....+..|+.|
T Consensus 192 --------------~~~~l~~lK~L~l~~CGls~k~V~~------~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~L 251 (505)
T KOG3207|consen 192 --------------TTLLLSHLKQLVLNSCGLSWKDVQW------ILLTFPSLEVLYLEANEIILIKATSTKILQTLQEL 251 (505)
T ss_pred --------------chhhhhhhheEEeccCCCCHHHHHH------HHHhCCcHHHhhhhcccccceecchhhhhhHHhhc
Confidence 0225889999999998632 11111 12269999999999985333222223346889999
Q ss_pred EEecCCCCccCCccccccCCCCCcccceecc---cccc--chh-----hcCCCCccEEEec
Q 043856 224 SIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVL--PDY-----LLRTTMLQELSIS 274 (275)
Q Consensus 224 ~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~l--p~~-----l~~L~~L~~L~l~ 274 (275)
+|++++.+. ++. ....+.+|.|+.|+++ +.++ |++ ...+++|++|++.
T Consensus 252 dLs~N~li~-~~~--~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~ 309 (505)
T KOG3207|consen 252 DLSNNNLID-FDQ--GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNIS 309 (505)
T ss_pred cccCCcccc-ccc--ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecc
Confidence 999986543 331 1246789999999996 3322 332 2457788888875
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.15 E-value=7e-07 Score=80.67 Aligned_cols=76 Identities=26% Similarity=0.313 Sum_probs=60.4
Q ss_pred hhHHHHHHhcCCCC-CCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCC-Ccc-cceeeccccccccccCc
Q 043856 62 EKDEQLLEALQPPL-NVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLG-KLP-LEKLELRDLKSVKRVGN 138 (275)
Q Consensus 62 ~~~~~l~~~l~~l~-~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~-~L~-L~~L~l~~~~~l~~l~~ 138 (275)
..+..++....... +|+.|+++++....+|..+..+++|+.|++.+ +.+..+|... .++ |+.|+++++. +..+|.
T Consensus 126 n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~ 203 (394)
T COG4886 126 NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPP 203 (394)
T ss_pred cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccCCc-cccCch
Confidence 44455677777775 99999999998888888899999999999999 5666777654 777 9999999764 777775
Q ss_pred c
Q 043856 139 E 139 (275)
Q Consensus 139 ~ 139 (275)
.
T Consensus 204 ~ 204 (394)
T COG4886 204 E 204 (394)
T ss_pred h
Confidence 4
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.12 E-value=2.6e-07 Score=80.74 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=38.6
Q ss_pred hhHHHHHH-hcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCC
Q 043856 62 EKDEQLLE-ALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP 116 (275)
Q Consensus 62 ~~~~~l~~-~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~ 116 (275)
+.+..||+ +++++++||.|+++.|.... -|..+..+.+|.+|.+.++++++.+|.
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 34445543 46777888888888777655 577777778887777777777777774
No 32
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=1e-05 Score=72.35 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=14.1
Q ss_pred CCCeEEecccCCcc-cccccCCCCCCcEEeeecCC
Q 043856 76 NVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCE 109 (275)
Q Consensus 76 ~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~ 109 (275)
+|+.|.+++|.... +|..+ .++|++|.+++|.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs 105 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCP 105 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCcc
Confidence 45555555443332 33322 1345555555543
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.10 E-value=3e-07 Score=77.85 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=22.0
Q ss_pred CCCCCeEEecccCCcc---------cccccCCCCCCcEEeeecC
Q 043856 74 PLNVEKLWIIFYGGNI---------LPKWLTSLTNLRDLKLVFC 108 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~---------lp~~l~~l~~L~~L~L~~c 108 (275)
+.+|.+|.+++..+-- +|-.+.-|.+|..+.++.|
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~ 224 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSAL 224 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeecc
Confidence 5677888877654211 3333446778888888876
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.02 E-value=9.4e-06 Score=52.96 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=33.1
Q ss_pred CcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecC
Q 043856 164 PKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSC 228 (275)
Q Consensus 164 ~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c 228 (275)
|+|+.|++.++ .+..++. +.+..+++|+.|++++| +++.+|. .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~-----~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP-----DSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECT-----TTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCH-----HHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 45666666654 4444442 12235666666666655 5665543 4466666666666665
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.00 E-value=3.7e-06 Score=82.76 Aligned_cols=82 Identities=22% Similarity=0.275 Sum_probs=51.1
Q ss_pred CCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCcccccc
Q 043856 162 AFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRR 241 (275)
Q Consensus 162 ~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 241 (275)
.+|.|+.|+++++..+..+|.+|+ .+-+|++|++++. .++.+|.+++++..|.+|++..+..+..++. .
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~------~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~----i 637 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIG------ELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPG----I 637 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHh------hhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccc----h
Confidence 466666666666666666665443 4666666766665 5666777777777777776666655555543 3
Q ss_pred CCCCCcccceecc
Q 043856 242 TTDIPRLSSLRIG 254 (275)
Q Consensus 242 ~~~l~~L~~L~l~ 254 (275)
...+++|++|.+.
T Consensus 638 ~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 638 LLELQSLRVLRLP 650 (889)
T ss_pred hhhcccccEEEee
Confidence 3346666666663
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=9.5e-07 Score=74.74 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=35.9
Q ss_pred CCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-CccccCCCCCccEEEEecC
Q 043856 161 TAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 161 ~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c 228 (275)
..+|+|..|+++++..++.-.. ..+..|+.|++|+++.|..+-- .--.+...|+|.+|++.+|
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~-----~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCF-----QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHH-----HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 3577777777777766553111 0112577777777777753321 0013455677777777776
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.91 E-value=1.3e-06 Score=74.07 Aligned_cols=56 Identities=27% Similarity=0.409 Sum_probs=25.6
Q ss_pred CCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceec
Q 043856 193 MPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRI 253 (275)
Q Consensus 193 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l 253 (275)
+.+.+.|.++.+ .++.+. +++.+-+|..|+++++. ++.+.. -..++++|+|+.+.+
T Consensus 351 LGNIKtL~La~N-~iE~LS-GL~KLYSLvnLDl~~N~-Ie~lde--V~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 351 LGNIKTLKLAQN-KIETLS-GLRKLYSLVNLDLSSNQ-IEELDE--VNHIGNLPCLETLRL 406 (490)
T ss_pred hcCEeeeehhhh-hHhhhh-hhHhhhhheeccccccc-hhhHHH--hcccccccHHHHHhh
Confidence 445555555554 344442 44555555555555542 222111 113455555555544
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=5.7e-07 Score=76.07 Aligned_cols=160 Identities=17% Similarity=0.117 Sum_probs=89.7
Q ss_pred hcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCC---CCCcc-cceeeccccccccccCccccccc
Q 043856 70 ALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP---LGKLP-LEKLELRDLKSVKRVGNEFLGIE 144 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~---l~~L~-L~~L~l~~~~~l~~l~~~~~~~~ 144 (275)
-+.+|.+|+.|.+.|..... +-..+.+-.+|+.|+|+.|+-++.... +..+. |..|+++-|...+..-..
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv----- 279 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV----- 279 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH-----
Confidence 34456666666666655432 333445666777777777655443321 23333 555555544321111000
Q ss_pred cccCCCCCCCCCCCCCC-CCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-CccccCCCCCccE
Q 043856 145 EISEDDPSSSSSSSSVT-AFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQTTALQE 222 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~ 222 (275)
++. --++|+.|.++++...-.... + ......+|+|..|++++|..++. .-..+.+++-|++
T Consensus 280 --------------~V~hise~l~~LNlsG~rrnl~~sh-~--~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 280 --------------AVAHISETLTQLNLSGYRRNLQKSH-L--STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred --------------HHhhhchhhhhhhhhhhHhhhhhhH-H--HHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 011 235788888887654211000 0 00112689999999999977765 2234667899999
Q ss_pred EEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 223 LSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 223 L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
|.++.|..+ ++.....+..+|+|.+|++.
T Consensus 343 lSlsRCY~i---~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 343 LSLSRCYDI---IPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred eehhhhcCC---ChHHeeeeccCcceEEEEec
Confidence 999998643 33222356778999999884
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.82 E-value=1.6e-06 Score=75.86 Aligned_cols=77 Identities=17% Similarity=0.174 Sum_probs=57.3
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccC
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVG 137 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~ 137 (275)
....+||..+. ..-..+++..|+...+|+ .++.+.+|+.|+|+. +.++.|.+ +..|+ |..|.+.+.++++.+|
T Consensus 56 ~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 56 KGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 34456777764 356777888888888775 567999999999999 55665543 66788 8888888877899998
Q ss_pred cccc
Q 043856 138 NEFL 141 (275)
Q Consensus 138 ~~~~ 141 (275)
.+.+
T Consensus 133 k~~F 136 (498)
T KOG4237|consen 133 KGAF 136 (498)
T ss_pred hhHh
Confidence 7643
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.79 E-value=2.7e-05 Score=50.78 Aligned_cols=56 Identities=27% Similarity=0.476 Sum_probs=39.9
Q ss_pred CcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 194 PRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
|+|+.|++++| +++.+|. .+.++++|++|++++| .+..++.. .+..+++|++|+++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~---~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPD---AFSNLPNLRYLDLS 57 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETT---TTTTSTTESEEEET
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHH---HHcCCCCCCEEeCc
Confidence 57888999888 7888874 5677899999998866 55555542 45556666666653
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.78 E-value=6.1e-06 Score=75.14 Aligned_cols=111 Identities=23% Similarity=0.316 Sum_probs=74.7
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcccccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
..+...+..+.+|..|++.++....+...+..+++|++|++++ +.+..+..+..++ |+.|+++++. +..+..
T Consensus 85 ~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~l~~N~-i~~~~~----- 157 (414)
T KOG0531|consen 85 AKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEGLSTLTLLKELNLSGNL-ISDISG----- 157 (414)
T ss_pred hhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccchhhccchhhheeccCc-chhccC-----
Confidence 3344557888899999998888776655577899999999999 7888888888888 9999998765 555432
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccC
Q 043856 144 EEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSC 204 (275)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c 204 (275)
+..+++|+.+++.++... .+... . ...+++++.+.+.++
T Consensus 158 ----------------~~~l~~L~~l~l~~n~i~-~ie~~----~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 158 ----------------LESLKSLKLLDLSYNRIV-DIEND----E-LSELISLEELDLGGN 196 (414)
T ss_pred ----------------CccchhhhcccCCcchhh-hhhhh----h-hhhccchHHHhccCC
Confidence 224667777777654321 11100 0 114666666666655
No 42
>PLN03150 hypothetical protein; Provisional
Probab=97.77 E-value=5.3e-05 Score=72.52 Aligned_cols=110 Identities=14% Similarity=0.135 Sum_probs=72.7
Q ss_pred CcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccccccc
Q 043856 100 LRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLL 177 (275)
Q Consensus 100 L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 177 (275)
++.|+|.+|.....+| .++.++ |+.|+|+++.....+|.. +..+++|+.|+++++.-.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~--------------------~~~l~~L~~LdLs~N~ls 479 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS--------------------LGSITSLEVLDLSYNSFN 479 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH--------------------HhCCCCCCEEECCCCCCC
Confidence 6777888765555565 367777 888888877533455544 457788888888876533
Q ss_pred cccccccccccccCCCCcccEEeEccCcccCcCccccCCC-CCccEEEEecCCCCccCC
Q 043856 178 EEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQT-TALQELSIYSCENLEELP 235 (275)
Q Consensus 178 ~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c~~l~~l~ 235 (275)
..++..+ ..+++|+.|++++|.....+|..++.+ .++..+++.+|+.+...|
T Consensus 480 g~iP~~l------~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 480 GSIPESL------GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCchHH------hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 3444322 268888888888885334578776543 466778888776555443
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=4.7e-05 Score=46.15 Aligned_cols=41 Identities=29% Similarity=0.266 Sum_probs=32.3
Q ss_pred CCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC
Q 043856 75 LNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP 116 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~ 116 (275)
++|++|+++++....+|..+++|++|+.|++++| .+..++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4799999999988888888999999999999995 5555544
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=5.1e-05 Score=45.99 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=31.4
Q ss_pred CcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCC
Q 043856 194 PRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELP 235 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~ 235 (275)
++|++|+++++ +++.+|..++++++|+.|++++| .+..++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 57899999998 79999887999999999999988 354443
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=1.3e-05 Score=77.03 Aligned_cols=104 Identities=21% Similarity=0.200 Sum_probs=69.9
Q ss_pred CCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCcccccc
Q 043856 162 AFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRR 241 (275)
Q Consensus 162 ~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 241 (275)
-||+|++|.+.+..-...... ....+||+|..|+|+++ +++.+ .+++++++|+.|.+++.+ +.... ....
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~-----~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe-~e~~~--~l~~ 215 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFS-----QLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLE-FESYQ--DLID 215 (699)
T ss_pred hCcccceEEecCceecchhHH-----HHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCC-CCchh--hHHH
Confidence 589999999987433222111 01227999999999998 68888 689999999999888753 22211 1113
Q ss_pred CCCCCcccceecc---ccccc---h----hhcCCCCccEEEecC
Q 043856 242 TTDIPRLSSLRIG---LKVLP---D----YLLRTTMLQELSISE 275 (275)
Q Consensus 242 ~~~l~~L~~L~l~---l~~lp---~----~l~~L~~L~~L~l~~ 275 (275)
+..+++|+.|+|+ ...-+ . .-..|++|+.|+.|+
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 5679999999997 11111 1 123488999998764
No 46
>PLN03150 hypothetical protein; Provisional
Probab=97.60 E-value=0.00014 Score=69.74 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=38.7
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPI 236 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~ 236 (275)
+..+++|+.|+++++.-...++..+ ..+++|+.|++++|.-...+|..++++++|+.|++++|.....+|.
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~------~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSL------GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHH------hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence 3456666666666543222333211 2566666666666632224666666666666666666654444554
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.49 E-value=4.6e-06 Score=78.25 Aligned_cols=175 Identities=22% Similarity=0.261 Sum_probs=83.5
Q ss_pred hhhHHHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc--cceeeccccccccccCc
Q 043856 61 NEKDEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP--LEKLELRDLKSVKRVGN 138 (275)
Q Consensus 61 ~~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~--L~~L~l~~~~~l~~l~~ 138 (275)
....+.|.+.+.+.+-|+.+..-+-.... |-.|..|.+|++|.+++|+.-. ...+..+. |+.|--.+ ++..+..
T Consensus 73 l~qLq~i~d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~--Sl~Al~~ 148 (1096)
T KOG1859|consen 73 LEQLQRILDFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHN--SLDALRH 148 (1096)
T ss_pred HHHHHHHHHHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhc--cHHHHHH
Confidence 44555667776666555555544332222 6677799999999999985433 22222222 44433211 1111111
Q ss_pred ccc---cccc-------ccCCCCC-C--CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCc
Q 043856 139 EFL---GIEE-------ISEDDPS-S--SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCN 205 (275)
Q Consensus 139 ~~~---~~~~-------~~~~~~~-~--~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~ 205 (275)
.|. +... +...+++ . ...-.++.-+|.|+.|+++.+. +.... .+..+++|+.|+|+++
T Consensus 149 v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~-------~Lr~l~~LkhLDlsyN- 219 (1096)
T KOG1859|consen 149 VFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD-------NLRRLPKLKHLDLSYN- 219 (1096)
T ss_pred HHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH-------HHHhcccccccccccc-
Confidence 110 0000 0000000 0 0000123445666777766532 11111 1115677777777776
Q ss_pred ccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 206 KLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 206 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.+..+|..-.--..|+.|.+++| .++.+-. +.++.+|+.|+++
T Consensus 220 ~L~~vp~l~~~gc~L~~L~lrnN-~l~tL~g-----ie~LksL~~LDls 262 (1096)
T KOG1859|consen 220 CLRHVPQLSMVGCKLQLLNLRNN-ALTTLRG-----IENLKSLYGLDLS 262 (1096)
T ss_pred hhccccccchhhhhheeeeeccc-HHHhhhh-----HHhhhhhhccchh
Confidence 56666642221223777777665 3444432 5567777777775
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.46 E-value=3.3e-05 Score=66.70 Aligned_cols=204 Identities=18% Similarity=0.188 Sum_probs=106.3
Q ss_pred hhhHHHHHHhcCCCCCCCeEEecccCCc----cccccc-------CCCCCCcEEeeecCCCCC-cCCC----CCCcc-cc
Q 043856 61 NEKDEQLLEALQPPLNVEKLWIIFYGGN----ILPKWL-------TSLTNLRDLKLVFCENCE-HLPP----LGKLP-LE 123 (275)
Q Consensus 61 ~~~~~~l~~~l~~l~~L~~L~l~~~~~~----~lp~~l-------~~l~~L~~L~L~~c~~~~-~lp~----l~~L~-L~ 123 (275)
..+.+.+-+.+...++|+..+++..... .+|..+ ...++|++|+|+.|-.-. .++. +.... |+
T Consensus 44 ~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~ 123 (382)
T KOG1909|consen 44 TEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLE 123 (382)
T ss_pred HHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHH
Confidence 4455667777777778888888753211 144433 256789999998853332 3333 33444 88
Q ss_pred eeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEcc
Q 043856 124 KLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGS 203 (275)
Q Consensus 124 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~ 203 (275)
+|++.+|. +........+.. +. +.-....+..-+.|+.+...++. +....... -...+...|.|+.+.+..
T Consensus 124 eL~L~N~G-lg~~ag~~l~~a-l~-----~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~-~A~~~~~~~~leevr~~q 194 (382)
T KOG1909|consen 124 ELYLNNCG-LGPEAGGRLGRA-LF-----ELAVNKKAASKPKLRVFICGRNR-LENGGATA-LAEAFQSHPTLEEVRLSQ 194 (382)
T ss_pred HHhhhcCC-CChhHHHHHHHH-HH-----HHHHHhccCCCcceEEEEeeccc-cccccHHH-HHHHHHhccccceEEEec
Confidence 88888875 443332211000 00 00000113445678887776533 21111000 000122457888888877
Q ss_pred CcccCc-----CccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---cc-----ccchhh-cCCCCcc
Q 043856 204 CNKLKA-----LPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LK-----VLPDYL-LRTTMLQ 269 (275)
Q Consensus 204 c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~-----~lp~~l-~~L~~L~ 269 (275)
+ .+.. +-.++.++++|+.|++++|-.-..-.......+..|++|+.|+++ ++ .+-+.+ ...++|+
T Consensus 195 N-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~ 273 (382)
T KOG1909|consen 195 N-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLE 273 (382)
T ss_pred c-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCc
Confidence 6 3331 233466789999999988732111000011135568888888886 11 122222 3367777
Q ss_pred EEEec
Q 043856 270 ELSIS 274 (275)
Q Consensus 270 ~L~l~ 274 (275)
.|.+.
T Consensus 274 vl~l~ 278 (382)
T KOG1909|consen 274 VLELA 278 (382)
T ss_pred eeccC
Confidence 77764
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.14 E-value=4.2e-05 Score=66.09 Aligned_cols=193 Identities=20% Similarity=0.191 Sum_probs=113.0
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccCCcc-cc----cccCCCCCCcEEeeecCCCCCcC--------------CCCCCcc-
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYGGNI-LP----KWLTSLTNLRDLKLVFCENCEHL--------------PPLGKLP- 121 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~-lp----~~l~~l~~L~~L~L~~c~~~~~l--------------p~l~~L~- 121 (275)
.....+.+++..+++|++|+++.|-... .+ .-+.+++.|++|.+.+|.....- ..++.-+
T Consensus 79 e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~ 158 (382)
T KOG1909|consen 79 EALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPK 158 (382)
T ss_pred HHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcc
Confidence 4455566777788899999999875432 22 33458999999999998532210 0133334
Q ss_pred cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeecccccccc-ccccccccccccCCCCcccEEe
Q 043856 122 LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLE-EWNYRITRKENISIMPRLSSLK 200 (275)
Q Consensus 122 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~-~l~~~i~~~~~~~~l~~L~~L~ 200 (275)
|+.+...++. +..-+..... ..++..|.|+.+.+....-.. ...- -...+.++|+|+.|+
T Consensus 159 Lrv~i~~rNr-len~ga~~~A---------------~~~~~~~~leevr~~qN~I~~eG~~a---l~eal~~~~~LevLd 219 (382)
T KOG1909|consen 159 LRVFICGRNR-LENGGATALA---------------EAFQSHPTLEEVRLSQNGIRPEGVTA---LAEALEHCPHLEVLD 219 (382)
T ss_pred eEEEEeeccc-cccccHHHHH---------------HHHHhccccceEEEecccccCchhHH---HHHHHHhCCcceeee
Confidence 7777777553 4433322111 114456788888886533211 1100 001223799999999
Q ss_pred EccCcccCc-----CccccCCCCCccEEEEecCCCCccCC-cccccc-CCCCCcccceecc--------ccccchhhcCC
Q 043856 201 VGSCNKLKA-----LPDYLLQTTALQELSIYSCENLEELP-IPEDRR-TTDIPRLSSLRIG--------LKVLPDYLLRT 265 (275)
Q Consensus 201 l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~l~-~~~~~~-~~~l~~L~~L~l~--------l~~lp~~l~~L 265 (275)
++++. ++. +-..+..+++|++|++.+|. ++.-- ...... -...|+|+.|.+. ...+-..+...
T Consensus 220 l~DNt-ft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek 297 (382)
T KOG1909|consen 220 LRDNT-FTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEK 297 (382)
T ss_pred cccch-hhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcc
Confidence 99984 432 33445567899999999994 32210 000000 1237889999885 22233355667
Q ss_pred CCccEEEecC
Q 043856 266 TMLQELSISE 275 (275)
Q Consensus 266 ~~L~~L~l~~ 275 (275)
+.|..|.|++
T Consensus 298 ~dL~kLnLng 307 (382)
T KOG1909|consen 298 PDLEKLNLNG 307 (382)
T ss_pred hhhHHhcCCc
Confidence 7888887753
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.07 E-value=0.00024 Score=68.52 Aligned_cols=100 Identities=22% Similarity=0.383 Sum_probs=71.6
Q ss_pred CcccEeeccccccc-cccccccccccccCCCCcccEEeEccCcccCc--CccccCCCCCccEEEEecCCCCccCCccccc
Q 043856 164 PKLKSLEIKELDLL-EEWNYRITRKENISIMPRLSSLKVGSCNKLKA--LPDYLLQTTALQELSIYSCENLEELPIPEDR 240 (275)
Q Consensus 164 ~~L~~L~l~~~~~l-~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~ 240 (275)
.+|+.|++++...+ ..|+..++ ..||+|+.|.+.+- .+.. +-....++|+|..|+|+++ ++..+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig-----~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~----- 189 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIG-----TMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNLS----- 189 (699)
T ss_pred HhhhhcCccccchhhccHHHHHh-----hhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCcH-----
Confidence 47999999885553 46765443 26999999999874 2321 3334567999999999997 455553
Q ss_pred cCCCCCcccceecc---ccccc--hhhcCCCCccEEEecC
Q 043856 241 RTTDIPRLSSLRIG---LKVLP--DYLLRTTMLQELSISE 275 (275)
Q Consensus 241 ~~~~l~~L~~L~l~---l~~lp--~~l~~L~~L~~L~l~~ 275 (275)
++.++++|+.|.+. +..-. ..+-+|++|+.||||.
T Consensus 190 GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 47789999999886 33222 2567899999999973
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.01 E-value=6e-05 Score=68.68 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=89.4
Q ss_pred CCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC-CCCcc-cceeeccccccccccCccccccccccCCC
Q 043856 73 PPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDD 150 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 150 (275)
.+..++.+.++.+.....-..+..+++|..|++.+ +.+..+.. +..++ |+.|+++++. ++.+..
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~------------ 135 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG------------ 135 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheeccccc-cccccc------------
Confidence 44556666666655544334466899999999999 67777777 88899 9999999764 666542
Q ss_pred CCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCC
Q 043856 151 PSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCE 229 (275)
Q Consensus 151 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 229 (275)
+..++.|+.|++.++. +..+.. ...+++|+.+++.++ .+..+... +..+.+|+.+++.++.
T Consensus 136 ---------l~~l~~L~~L~l~~N~-i~~~~~-------~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 136 ---------LSTLTLLKELNLSGNL-ISDISG-------LESLKSLKLLDLSYN-RIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ---------hhhccchhhheeccCc-chhccC-------CccchhhhcccCCcc-hhhhhhhhhhhhccchHHHhccCCc
Confidence 4467779999998754 333332 225889999999998 57766542 4678899999988764
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.0012 Score=56.34 Aligned_cols=69 Identities=22% Similarity=0.112 Sum_probs=40.4
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccCCccccccc-CCCCCCcEEeeecCCC-CCcCC-CCCCcc-cceeecccc
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYGGNILPKWL-TSLTNLRDLKLVFCEN-CEHLP-PLGKLP-LEKLELRDL 130 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l-~~l~~L~~L~L~~c~~-~~~lp-~l~~L~-L~~L~l~~~ 130 (275)
.+..+|...+.+++.|+.|+++.|+....-..+ ..+.+|++|.|.+... ++... .+..+| ++.|+++.+
T Consensus 84 SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 84 SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 445566666777888888888776643311111 2456788887777432 11221 255677 777777754
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.64 E-value=0.0044 Score=50.03 Aligned_cols=103 Identities=21% Similarity=0.329 Sum_probs=66.5
Q ss_pred CCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccccc
Q 043856 97 LTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELD 175 (275)
Q Consensus 97 l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 175 (275)
+.+...++|++ +.+..++.+..++ |..|.+.+++ +..|.... ...+|+|+.|.+.+..
T Consensus 41 ~d~~d~iDLtd-Ndl~~l~~lp~l~rL~tLll~nNr-It~I~p~L-------------------~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 41 LDQFDAIDLTD-NDLRKLDNLPHLPRLHTLLLNNNR-ITRIDPDL-------------------DTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccceecccc-cchhhcccCCCccccceEEecCCc-ceeeccch-------------------hhhccccceEEecCcc
Confidence 44667788888 5666666677777 8899888654 77776542 1246788888887632
Q ss_pred --cccccccccccccccCCCCcccEEeEccCcccCcCc----cccCCCCCccEEEEecC
Q 043856 176 --LLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP----DYLLQTTALQELSIYSC 228 (275)
Q Consensus 176 --~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp----~~l~~l~~L~~L~l~~c 228 (275)
.+.++. ....+|+|++|.+-++| .+.-. .-+..+|+|+.|++.+-
T Consensus 100 i~~l~dl~-------pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQELGDLD-------PLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhhcc-------hhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 222222 22268888888888875 32211 12456788888887653
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.0014 Score=56.00 Aligned_cols=57 Identities=23% Similarity=0.155 Sum_probs=36.2
Q ss_pred CCCCCCeEEecccCCcc---cccccCCCCCCcEEeeecCCCCCcCCCCCCcc---cceeecccc
Q 043856 73 PPLNVEKLWIIFYGGNI---LPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP---LEKLELRDL 130 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~---L~~L~l~~~ 130 (275)
..+.++.+++.+|.... +-.-+.+++.|++|+|+.|.....+..+. +| |+.|.+.+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGT 131 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCC
Confidence 46688999998887543 11223489999999999864433332222 23 777777643
No 55
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.00058 Score=57.71 Aligned_cols=106 Identities=23% Similarity=0.259 Sum_probs=69.8
Q ss_pred CCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 74 PLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
+.+.+.|+..||....+. -..+++.|+.|.|+- ++++++.++.... |++|+|..+. +..+..-++
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN~-I~sldEL~Y----------- 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKNC-IESLDELEY----------- 83 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeec-cccccchhHHHHHHHHHHHHHhcc-cccHHHHHH-----------
Confidence 457788888888765322 233899999999998 7888888887788 9999998553 666554333
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeE
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKV 201 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l 201 (275)
+.++|+|+.|.|...+.-..-...- ....+..+|+|++|+=
T Consensus 84 -------LknlpsLr~LWL~ENPCc~~ag~nY-R~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 84 -------LKNLPSLRTLWLDENPCCGEAGQNY-RRKVLRVLPNLKKLDN 124 (388)
T ss_pred -------HhcCchhhhHhhccCCcccccchhH-HHHHHHHcccchhccC
Confidence 6688999999887655432211100 0001125788888753
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.66 E-value=0.00057 Score=64.69 Aligned_cols=70 Identities=24% Similarity=0.262 Sum_probs=43.8
Q ss_pred HHHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc--cceeecccccccccc
Q 043856 64 DEQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP--LEKLELRDLKSVKRV 136 (275)
Q Consensus 64 ~~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~--L~~L~l~~~~~l~~l 136 (275)
...+=+++.-++.|++|+++.|+....- .+..+++|++|+|++ |.+..+|.++.-. |..|.|+++. ++.+
T Consensus 176 L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~L~~L~lrnN~-l~tL 247 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCKLQLLNLRNNA-LTTL 247 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhhhheeeeecccH-HHhh
Confidence 3334445555667777777777665433 566777788888877 5666666655443 7777777553 4443
No 57
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.0017 Score=52.28 Aligned_cols=69 Identities=19% Similarity=0.414 Sum_probs=51.4
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc-cccCCCCCccEEEEecCCCCc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP-DYLLQTTALQELSIYSCENLE 232 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~ 232 (275)
+..++.++.|.+.+|..+..|..+. .....|+|+.|.|++|+++++-- ..+..+++|+.|.+.+.+.+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~----l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLER----LGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHHH----hcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 4467888889999999888877521 11157899999999999998731 346678999999888766443
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.36 E-value=0.007 Score=53.95 Aligned_cols=167 Identities=18% Similarity=0.261 Sum_probs=101.5
Q ss_pred HHHHhcCCCCCCCeEEecccCCcc-cccc-c-CCCCCCcEEeeecCCCCCcCC--CCC-Ccc-cceeeccccccccccCc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNI-LPKW-L-TSLTNLRDLKLVFCENCEHLP--PLG-KLP-LEKLELRDLKSVKRVGN 138 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~-lp~~-l-~~l~~L~~L~L~~c~~~~~lp--~l~-~L~-L~~L~l~~~~~l~~l~~ 138 (275)
.+...-..+..|+.|..+++.... .+-| + .+..+|+.|.+..|...+... .++ +.+ |+.+++..|.....-
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-- 362 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-- 362 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--
Confidence 355555567788999888877643 2222 2 277899999999987654332 233 233 777777666422211
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-CccccCCC
Q 043856 139 EFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQT 217 (275)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l 217 (275)
.+. ....+++.|+.|.++.|..+..--- ..-......+..|+.+.+.+||.+.. .-..+..+
T Consensus 363 tL~----------------sls~~C~~lr~lslshce~itD~gi-~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 363 TLA----------------SLSRNCPRLRVLSLSHCELITDEGI-RHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred hHh----------------hhccCCchhccCChhhhhhhhhhhh-hhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence 111 0133688999999988776543300 00011223577899999999987765 33446667
Q ss_pred CCccEEEEecCCCCccCCccccccCCCCCcccceec
Q 043856 218 TALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRI 253 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l 253 (275)
++|+.+++.+|..+..-+... ...++|++++...
T Consensus 426 ~~Leri~l~~~q~vtk~~i~~--~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 426 RNLERIELIDCQDVTKEAISR--FATHLPNIKVHAY 459 (483)
T ss_pred cccceeeeechhhhhhhhhHH--HHhhCccceehhh
Confidence 899999999998765543321 1235777776655
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.94 E-value=0.014 Score=48.84 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=16.4
Q ss_pred CCcccEEeEccCcccCc---CccccCCCCCccEEEEecCC
Q 043856 193 MPRLSSLKVGSCNKLKA---LPDYLLQTTALQELSIYSCE 229 (275)
Q Consensus 193 l~~L~~L~l~~c~~l~~---lp~~l~~l~~L~~L~l~~c~ 229 (275)
+|+|++|.++++ +++- ++ .+..+.+|..|++..|+
T Consensus 90 ~P~l~~l~ls~N-ki~~lstl~-pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 90 APNLKVLNLSGN-KIKDLSTLR-PLKELENLKSLDLFNCS 127 (260)
T ss_pred CCceeEEeecCC-ccccccccc-hhhhhcchhhhhcccCC
Confidence 356666665554 3332 22 13334455555555554
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.93 E-value=0.0032 Score=57.97 Aligned_cols=131 Identities=22% Similarity=0.252 Sum_probs=68.2
Q ss_pred CCCCCeEEecccCCcc---cccccCCCCCCcEEeeecC-CCCCcCCC-----CCCcc-cceeeccccccccccCcccccc
Q 043856 74 PLNVEKLWIIFYGGNI---LPKWLTSLTNLRDLKLVFC-ENCEHLPP-----LGKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~c-~~~~~lp~-----l~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
+++|+.|.+.++.... +-......++|+.|++++| ......+. ....+ |+.|+++.+..+........
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l-- 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL-- 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH--
Confidence 6777788777765543 2233347788888888773 33222221 11223 67777776654333222111
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc--CccccCCCCCcc
Q 043856 144 EEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA--LPDYLLQTTALQ 221 (275)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~ 221 (275)
...+++|+.|.+.+|..+..--. ......+++|+.|++++|..++. +.....++++|+
T Consensus 265 ----------------~~~c~~L~~L~l~~c~~lt~~gl----~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~ 324 (482)
T KOG1947|consen 265 ----------------ASRCPNLETLSLSNCSNLTDEGL----VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLR 324 (482)
T ss_pred ----------------HhhCCCcceEccCCCCccchhHH----HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchh
Confidence 12367788887777765322111 00112577788888887766532 222233345544
Q ss_pred EEEEe
Q 043856 222 ELSIY 226 (275)
Q Consensus 222 ~L~l~ 226 (275)
.|.+.
T Consensus 325 ~l~~~ 329 (482)
T KOG1947|consen 325 ELKLL 329 (482)
T ss_pred hhhhh
Confidence 44433
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.87 E-value=0.013 Score=49.10 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=56.5
Q ss_pred CCcccEeecccccc--ccccccccccccccCCCCcccEEeEccC--cccCcCccccCCCCCccEEEEecCCC--CccCCc
Q 043856 163 FPKLKSLEIKELDL--LEEWNYRITRKENISIMPRLSSLKVGSC--NKLKALPDYLLQTTALQELSIYSCEN--LEELPI 236 (275)
Q Consensus 163 l~~L~~L~l~~~~~--l~~l~~~i~~~~~~~~l~~L~~L~l~~c--~~l~~lp~~l~~l~~L~~L~l~~c~~--l~~l~~ 236 (275)
|..|+.|++.++.- +..+| .+|+|++|.++.+ .-...++...-.+|+|++|.++++.. +.++..
T Consensus 42 ~~~le~ls~~n~gltt~~~~P----------~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFP----------KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred ccchhhhhhhccceeecccCC----------CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 55667776665432 23333 6899999999877 22233555555669999999998751 233332
Q ss_pred cccccCCCCCcccceeccccccch-------hhcCCCCccEEE
Q 043856 237 PEDRRTTDIPRLSSLRIGLKVLPD-------YLLRTTMLQELS 272 (275)
Q Consensus 237 ~~~~~~~~l~~L~~L~l~l~~lp~-------~l~~L~~L~~L~ 272 (275)
...+++|..|++.....+. .+.-+++|++|+
T Consensus 112 -----l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 112 -----LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred -----hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 4456677777775222221 234466666665
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.67 E-value=0.041 Score=44.61 Aligned_cols=64 Identities=27% Similarity=0.211 Sum_probs=40.2
Q ss_pred HHhcCCCCCCCeEEecccCCcccccccC-CCCCCcEEeeecCC--CCCcCCCCCCcc-cceeeccccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNILPKWLT-SLTNLRDLKLVFCE--NCEHLPPLGKLP-LEKLELRDLK 131 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~c~--~~~~lp~l~~L~-L~~L~l~~~~ 131 (275)
.+.+..+++|..|.+.+|....+-..+. .+++|+.|.+.+|+ .+..+-++..+| |++|.+-+++
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 4556667777888887777666544444 56678888877742 223344455566 7777766554
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.52 E-value=0.023 Score=28.63 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=13.3
Q ss_pred cccEEeEccCcccCcCccccC
Q 043856 195 RLSSLKVGSCNKLKALPDYLL 215 (275)
Q Consensus 195 ~L~~L~l~~c~~l~~lp~~l~ 215 (275)
+|++|++++| +++.+|.+++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 4677777777 6667776544
No 64
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.18 E-value=0.034 Score=26.13 Aligned_cols=16 Identities=31% Similarity=0.644 Sum_probs=6.7
Q ss_pred cccEEeEccCcccCcCc
Q 043856 195 RLSSLKVGSCNKLKALP 211 (275)
Q Consensus 195 ~L~~L~l~~c~~l~~lp 211 (275)
+|+.|++++| +++++|
T Consensus 2 ~L~~L~l~~n-~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNN-RLTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCC-CCCCCc
Confidence 4555566555 355443
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.10 E-value=0.015 Score=51.83 Aligned_cols=133 Identities=19% Similarity=0.285 Sum_probs=82.4
Q ss_pred CCCCCcEEeeecCCCCCcCC--CCCC-cc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeec
Q 043856 96 SLTNLRDLKLVFCENCEHLP--PLGK-LP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEI 171 (275)
Q Consensus 96 ~l~~L~~L~L~~c~~~~~lp--~l~~-L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 171 (275)
.+..|+.|+.++|..+...+ .+++ -+ |+.|.++.|..+.......+ -.+.+.|+.+++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l------------------~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTML------------------GRNCPHLERLDL 353 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhh------------------hcCChhhhhhcc
Confidence 46677888888876655443 2332 34 88888888776554433222 225778888888
Q ss_pred cccccccccccccccccccCCCCcccEEeEccCcccCcC-----ccccCCCCCccEEEEecCCCCccCCccccccCCCCC
Q 043856 172 KELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-----PDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIP 246 (275)
Q Consensus 172 ~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~ 246 (275)
.+|.....-.. ......+|.|+.|.++.|..++.- ...-..+..|+.+.+.+||.+...-. ..+...+
T Consensus 354 e~~~~~~d~tL----~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L---e~l~~c~ 426 (483)
T KOG4341|consen 354 EECGLITDGTL----ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL---EHLSICR 426 (483)
T ss_pred cccceehhhhH----hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH---HHHhhCc
Confidence 77765433211 112236899999999988766542 22334567889999999986654322 1345577
Q ss_pred cccceec
Q 043856 247 RLSSLRI 253 (275)
Q Consensus 247 ~L~~L~l 253 (275)
+|+.+++
T Consensus 427 ~Leri~l 433 (483)
T KOG4341|consen 427 NLERIEL 433 (483)
T ss_pred ccceeee
Confidence 8888766
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.06 E-value=0.029 Score=28.28 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=14.2
Q ss_pred CCCeEEecccCCcccccccCC
Q 043856 76 NVEKLWIIFYGGNILPKWLTS 96 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp~~l~~ 96 (275)
+|++|++++|....+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477788887766667766543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=0.0017 Score=54.90 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=18.3
Q ss_pred CCCcccEEeEccCcccCcCccccCCCCCccEEEEecC
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 228 (275)
.||.|+.|.++-+ +++++- .+..++.|++|.++.+
T Consensus 39 kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 39 KMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKN 73 (388)
T ss_pred hcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhc
Confidence 4566666666554 455543 2444555555555543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.65 E-value=0.012 Score=54.17 Aligned_cols=116 Identities=27% Similarity=0.354 Sum_probs=72.0
Q ss_pred CCCCCcEEeeecCCCCCc--C-CCCCCcc-cceeecccc-ccccccCccccccccccCCCCCCCCCCCCCCCCCcccEee
Q 043856 96 SLTNLRDLKLVFCENCEH--L-PPLGKLP-LEKLELRDL-KSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLE 170 (275)
Q Consensus 96 ~l~~L~~L~L~~c~~~~~--l-p~l~~L~-L~~L~l~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 170 (275)
.+++|+.|.+.+|..+.. + +.....+ |+.|+++++ ......+.... .....+++|+.|+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----------------~~~~~~~~L~~l~ 249 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL----------------LLLSICRKLKSLD 249 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh----------------hhhhhcCCcCccc
Confidence 467888888888766554 2 2344456 888888763 22222111100 0134568899999
Q ss_pred ccccccccccccccccccccCCCCcccEEeEccCcccCc--CccccCCCCCccEEEEecCCCC
Q 043856 171 IKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA--LPDYLLQTTALQELSIYSCENL 231 (275)
Q Consensus 171 l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l 231 (275)
+..+..+...-... ....+++|+.|.+.+|..++. +-.....+++|++|++++|..+
T Consensus 250 l~~~~~isd~~l~~----l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 250 LSGCGLVTDIGLSA----LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhhhhccCchhHHH----HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 98877544322100 111488999999999976553 3344456889999999999875
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.60 E-value=0.007 Score=46.08 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=55.4
Q ss_pred CCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCcccccc
Q 043856 162 AFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRR 241 (275)
Q Consensus 162 ~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 241 (275)
....|+..++++. .++.++..+. ..||.++.|++.++ .+..+|..+..++.|+.|+++.++ +...|. -
T Consensus 51 ~~~el~~i~ls~N-~fk~fp~kft-----~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~-l~~~p~----v 118 (177)
T KOG4579|consen 51 KGYELTKISLSDN-GFKKFPKKFT-----IKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNP-LNAEPR----V 118 (177)
T ss_pred CCceEEEEecccc-hhhhCCHHHh-----hccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCc-cccchH----H
Confidence 4556777788763 3555554222 15778889999887 788899889899999999998875 333443 3
Q ss_pred CCCCCcccceecc
Q 043856 242 TTDIPRLSSLRIG 254 (275)
Q Consensus 242 ~~~l~~L~~L~l~ 254 (275)
+..+.++..|+..
T Consensus 119 i~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 119 IAPLIKLDMLDSP 131 (177)
T ss_pred HHHHHhHHHhcCC
Confidence 4446666666653
No 70
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.03 E-value=0.015 Score=44.37 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=49.0
Q ss_pred HHHhcCCCCCCCeEEecccCCcccccccC-CCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCcc
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNILPKWLT-SLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~lp~~l~-~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
.+-.+.....|...++++|....+|..+. +++.++.|++.+ +.+..+| .+..+| |+.|+++.++ +...|..
T Consensus 45 avy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~v 118 (177)
T KOG4579|consen 45 AVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP-LNAEPRV 118 (177)
T ss_pred HHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc-cccchHH
Confidence 34445555677777888887777777665 677888888887 6677777 366777 8888888654 4444443
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.47 E-value=0.12 Score=44.01 Aligned_cols=47 Identities=26% Similarity=0.147 Sum_probs=29.4
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccCCcc-ccc----ccCCCCCCcEEeeecC
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYGGNI-LPK----WLTSLTNLRDLKLVFC 108 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~-lp~----~l~~l~~L~~L~L~~c 108 (275)
.+..-+..++-+|++|+..+++.|-... +|. .|++-+.|++|.+.+|
T Consensus 79 ~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 79 SNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred HHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 3444556677777777777777654322 443 3346677777777775
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.76 E-value=0.044 Score=46.54 Aligned_cols=184 Identities=15% Similarity=0.080 Sum_probs=93.7
Q ss_pred chhhHHHHHHhcCCCCCCCeEEecccC-Cc---ccccc-------cCCCCCCcEEeeecCCCCCcCCC-----CCCcc-c
Q 043856 60 KNEKDEQLLEALQPPLNVEKLWIIFYG-GN---ILPKW-------LTSLTNLRDLKLVFCENCEHLPP-----LGKLP-L 122 (275)
Q Consensus 60 ~~~~~~~l~~~l~~l~~L~~L~l~~~~-~~---~lp~~-------l~~l~~L~~L~L~~c~~~~~lp~-----l~~L~-L 122 (275)
.-.+.+.+...+..-.+|+..+++... +. .+|+. +.++++|+..+|+.|-.....|. +.+-. |
T Consensus 43 gtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l 122 (388)
T COG5238 43 GTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDL 122 (388)
T ss_pred cHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCc
Confidence 334556667777777777777776421 11 13332 34788999999998655544443 33334 8
Q ss_pred ceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEc
Q 043856 123 EKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVG 202 (275)
Q Consensus 123 ~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~ 202 (275)
..|.+++|. +..+..+-.+..-. . --.......=|.|+.......+ +...+...... .+..-.+|+.+.+.
T Consensus 123 ~HL~l~NnG-lGp~aG~rigkal~-~-----la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~-~l~sh~~lk~vki~ 193 (388)
T COG5238 123 VHLKLNNNG-LGPIAGGRIGKALF-H-----LAYNKKAADKPKLEVVICGRNR-LENGSKELSAA-LLESHENLKEVKIQ 193 (388)
T ss_pred eeEEeecCC-CCccchhHHHHHHH-H-----HHHHhhhccCCCceEEEeccch-hccCcHHHHHH-HHHhhcCceeEEee
Confidence 888888774 55443321110000 0 0000012345566666654422 22111100000 00112478888887
Q ss_pred cCcccCc------CccccCCCCCccEEEEecCCCCccCCc-cccccCCCCCcccceecc
Q 043856 203 SCNKLKA------LPDYLLQTTALQELSIYSCENLEELPI-PEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 203 ~c~~l~~------lp~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~~l~~L~~L~l~ 254 (275)
.+ .++. +-.++..+.+|+.|++.++.. +..-. .-...+..|+.|+.|.++
T Consensus 194 qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtf-t~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 194 QN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF-TLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred ec-CcCcchhHHHHHHHHHHhCcceeeeccccch-hhhhHHHHHHHhcccchhhhcccc
Confidence 76 3441 112345678999999988742 11100 001134567888888885
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.60 E-value=0.033 Score=45.05 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=43.3
Q ss_pred CCCcccEEeEccCcccCc--CccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 192 IMPRLSSLKVGSCNKLKA--LPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.++.++.|++.+|..+.. +-.--+-.++|+.|+|++|+.+++.-. ..+..+++|+.|.+.
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL---~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL---ACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH---HHHHHhhhhHHHHhc
Confidence 678899999999976653 111112468999999999998876433 245678888888885
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.39 E-value=0.68 Score=24.00 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=12.0
Q ss_pred CcccEEeEccCcccCcCccc
Q 043856 194 PRLSSLKVGSCNKLKALPDY 213 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~~lp~~ 213 (275)
++|+.|++.+| +++.+|..
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 46666777666 56666654
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.39 E-value=0.68 Score=24.00 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=12.0
Q ss_pred CcccEEeEccCcccCcCccc
Q 043856 194 PRLSSLKVGSCNKLKALPDY 213 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~~lp~~ 213 (275)
++|+.|++.+| +++.+|..
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 46666777666 56666654
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=83.50 E-value=7 Score=28.60 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=10.6
Q ss_pred CCcccEEeEccCcccCcCcc-ccCCCCCccEEEE
Q 043856 193 MPRLSSLKVGSCNKLKALPD-YLLQTTALQELSI 225 (275)
Q Consensus 193 l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l 225 (275)
+++|+.+.+.. .+..++. .+.++++|+.+.+
T Consensus 34 ~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 34 CTSLKSINFPN--NLTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp -TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEE
T ss_pred ccccccccccc--cccccceeeeecccccccccc
Confidence 44455555433 2333332 1233334555544
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.42 E-value=0.74 Score=23.98 Aligned_cols=15 Identities=27% Similarity=0.771 Sum_probs=7.9
Q ss_pred CcccEEeEccCcccC
Q 043856 194 PRLSSLKVGSCNKLK 208 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~ 208 (275)
|+|+.|+|++|++++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 455555555555444
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=73.12 E-value=14 Score=26.94 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=39.1
Q ss_pred cCCCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc--ccccch-hhcCC
Q 043856 190 ISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG--LKVLPD-YLLRT 265 (275)
Q Consensus 190 ~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~--l~~lp~-~l~~L 265 (275)
+..+++|+.+.+.. .++.++. .+.++++|+.+.+.+ .+..++.. .+..+++|+.+.+. +..++. .+.++
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~---~F~~~~~l~~i~~~~~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDN---AFSNCKSLESITFPNNLKSIGDNAFSNC 80 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TT---TTTT-TT-EEEEETSTT-EE-TTTTTT-
T ss_pred HhCCCCCCEEEECC--CeeEeChhhcccccccccccccc--ccccccee---eeeccccccccccccccccccccccccc
Confidence 33577888888864 4666654 356677899998865 35555542 45556667777774 444443 44556
Q ss_pred CCccEEEe
Q 043856 266 TMLQELSI 273 (275)
Q Consensus 266 ~~L~~L~l 273 (275)
++|+.+.+
T Consensus 81 ~~l~~i~~ 88 (129)
T PF13306_consen 81 TNLKNIDI 88 (129)
T ss_dssp TTECEEEE
T ss_pred cccccccc
Confidence 67776665
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=62.94 E-value=4.8 Score=21.16 Aligned_cols=18 Identities=39% Similarity=0.748 Sum_probs=11.2
Q ss_pred CcccEEeEccCcccCcCcc
Q 043856 194 PRLSSLKVGSCNKLKALPD 212 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~~lp~ 212 (275)
++|+.|.++++ +++++|.
T Consensus 2 ~~L~~L~vs~N-~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNN-QLTSLPE 19 (26)
T ss_pred cccceeecCCC-ccccCcc
Confidence 35666666665 5666664
No 80
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=56.19 E-value=6.8 Score=30.32 Aligned_cols=12 Identities=25% Similarity=0.041 Sum_probs=4.5
Q ss_pred eeeeeeeeecCC
Q 043856 6 HLYLWFEVVDRE 17 (275)
Q Consensus 6 ~~~~~~~~~~~~ 17 (275)
|+.-.+.+...+
T Consensus 100 hisG~~~~~~~~ 111 (149)
T PF03066_consen 100 HISGQHLVAMEE 111 (149)
T ss_dssp EEEEEEEEE---
T ss_pred EeeCcccccccc
Confidence 555555443333
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=53.10 E-value=13 Score=19.53 Aligned_cols=10 Identities=50% Similarity=0.611 Sum_probs=6.1
Q ss_pred CCCcEEeeec
Q 043856 98 TNLRDLKLVF 107 (275)
Q Consensus 98 ~~L~~L~L~~ 107 (275)
++|+.|++++
T Consensus 2 ~~L~~L~L~~ 11 (26)
T smart00365 2 TNLEELDLSQ 11 (26)
T ss_pred CccCEEECCC
Confidence 4566666665
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=49.82 E-value=9.8 Score=19.02 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=6.2
Q ss_pred CCccEEEEecCC
Q 043856 218 TALQELSIYSCE 229 (275)
Q Consensus 218 ~~L~~L~l~~c~ 229 (275)
++|++|+|++|+
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 566677766653
No 83
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=48.38 E-value=9.3 Score=34.71 Aligned_cols=7 Identities=29% Similarity=0.283 Sum_probs=2.6
Q ss_pred cceeecc
Q 043856 122 LEKLELR 128 (275)
Q Consensus 122 L~~L~l~ 128 (275)
|+.-+|+
T Consensus 206 LE~AY~S 212 (458)
T PF10446_consen 206 LEAAYIS 212 (458)
T ss_pred HHHHHHH
Confidence 3333333
No 84
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.97 E-value=11 Score=33.71 Aligned_cols=6 Identities=17% Similarity=0.241 Sum_probs=2.5
Q ss_pred eecCCC
Q 043856 13 VVDRED 18 (275)
Q Consensus 13 ~~~~~~ 18 (275)
-|++..
T Consensus 264 sv~~~s 269 (514)
T KOG3130|consen 264 SVNGSS 269 (514)
T ss_pred cccCCC
Confidence 344443
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.14 E-value=6.7 Score=36.79 Aligned_cols=62 Identities=19% Similarity=0.081 Sum_probs=40.2
Q ss_pred CCCCCCeEEecccCCccc---ccccCCCCCCcEEeeecC-CCCCcCCC---CCCcccceeecccccccc
Q 043856 73 PPLNVEKLWIIFYGGNIL---PKWLTSLTNLRDLKLVFC-ENCEHLPP---LGKLPLEKLELRDLKSVK 134 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~L~~c-~~~~~lp~---l~~L~L~~L~l~~~~~l~ 134 (275)
+.+.+..+++++|+...+ ..--...++|+.|+|+++ ..+...+. ++.+||++|.+.+++-.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 456778888888776552 222237789999999985 24443333 444448999988876443
No 86
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=41.00 E-value=16 Score=24.78 Aligned_cols=7 Identities=71% Similarity=1.616 Sum_probs=2.8
Q ss_pred ccccccc
Q 043856 20 DWEDEEE 26 (275)
Q Consensus 20 ~~~~~~~ 26 (275)
.|+++++
T Consensus 48 EWeE~e~ 54 (77)
T PF12253_consen 48 EWEEEEE 54 (77)
T ss_pred ccccCCC
Confidence 3443333
No 87
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=37.41 E-value=41 Score=33.59 Aligned_cols=7 Identities=43% Similarity=0.439 Sum_probs=3.0
Q ss_pred HHHHhcC
Q 043856 66 QLLEALQ 72 (275)
Q Consensus 66 ~l~~~l~ 72 (275)
.+.++++
T Consensus 707 ~l~~aL~ 713 (784)
T PF04931_consen 707 ALAKALG 713 (784)
T ss_pred HHHHHhc
Confidence 3444444
No 88
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.19 E-value=35 Score=30.71 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=5.9
Q ss_pred cCCCcccccccccc
Q 043856 15 DREDEDWEDEEEDE 28 (275)
Q Consensus 15 ~~~~~~~~~~~~~~ 28 (275)
+.+.++++|+|+++
T Consensus 269 ss~~edD~Dddd~d 282 (514)
T KOG3130|consen 269 SSYHEDDDDDDDDD 282 (514)
T ss_pred CCcccccccccccc
Confidence 34444444443333
No 89
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=24.66 E-value=52 Score=30.79 Aligned_cols=14 Identities=29% Similarity=0.078 Sum_probs=7.4
Q ss_pred hheeeeeeeeecCC
Q 043856 4 LLHLYLWFEVVDRE 17 (275)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (275)
-+||+..--.-+.+
T Consensus 56 alHlrrvesa~~~e 69 (694)
T KOG4264|consen 56 ALHLRRVESAKPAE 69 (694)
T ss_pred ccchhcccccCccc
Confidence 36776655444433
No 90
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=24.21 E-value=32 Score=26.63 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=2.8
Q ss_pred cCCCCCC
Q 043856 71 LQPPLNV 77 (275)
Q Consensus 71 l~~l~~L 77 (275)
+.|++++
T Consensus 94 LaPlt~p 100 (149)
T PF08595_consen 94 LAPLTHP 100 (149)
T ss_pred hcccCCH
Confidence 3444433
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.59 E-value=32 Score=32.50 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=44.8
Q ss_pred CCCcccEeeccccc--cccccccccccccccCCCCcccEEeEccCcccCcCccccCC--CCCccEEEEecCCCCccCCcc
Q 043856 162 AFPKLKSLEIKELD--LLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQ--TTALQELSIYSCENLEELPIP 237 (275)
Q Consensus 162 ~l~~L~~L~l~~~~--~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~--l~~L~~L~l~~c~~l~~l~~~ 237 (275)
++|.+..+.+++.. .+..+.. .....|+|+.|+|+++.....--.++.+ ...|++|.+.|+|-.+.+-..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~ss------lsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~ 289 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSS------LSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDR 289 (585)
T ss_pred CCcceeeeecccchhhchhhhhH------HHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhh
Confidence 57777777776532 2222221 1125789999999887322211112222 356788988888755544331
Q ss_pred cc---ccCCCCCccccee
Q 043856 238 ED---RRTTDIPRLSSLR 252 (275)
Q Consensus 238 ~~---~~~~~l~~L~~L~ 252 (275)
.. .....+|+|..|+
T Consensus 290 s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 290 SEYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHHhcchheeec
Confidence 10 0011366666654
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=20.97 E-value=72 Score=16.64 Aligned_cols=11 Identities=9% Similarity=-0.042 Sum_probs=5.6
Q ss_pred CCCeEEecccC
Q 043856 76 NVEKLWIIFYG 86 (275)
Q Consensus 76 ~L~~L~l~~~~ 86 (275)
+|++|+|++|.
T Consensus 3 ~L~~LdL~~N~ 13 (28)
T smart00368 3 SLRELDLSNNK 13 (28)
T ss_pred ccCEEECCCCC
Confidence 45555555443
No 93
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=20.80 E-value=3.7 Score=34.40 Aligned_cols=90 Identities=17% Similarity=0.041 Sum_probs=0.0
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCcccccccccc
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEIS 147 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~ 147 (275)
.+......+.|+++.++...+-..++.++.|..|+++. +.+..+| ..+++. +..+..+++. ....|.+
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-------- 106 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-------- 106 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc--------
Q ss_pred CCCCCCCCCCCCCCCCCcccEeeccccccccccc
Q 043856 148 EDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWN 181 (275)
Q Consensus 148 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~ 181 (275)
.+..|+++.++..+.+-...|.
T Consensus 107 ------------~~k~~~~k~~e~k~~~~~~~~~ 128 (326)
T KOG0473|consen 107 ------------QKKEPHPKKNEQKKTEFFRKLF 128 (326)
T ss_pred ------------ccccCCcchhhhccCcchHHHH
No 94
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=20.25 E-value=52 Score=33.13 Aligned_cols=23 Identities=43% Similarity=0.429 Sum_probs=10.8
Q ss_pred eeeeeeecCCCcccccccccccc
Q 043856 8 YLWFEVVDREDEDWEDEEEDEDE 30 (275)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~ 30 (275)
|.|-..+|.+.+++++++|+|+|
T Consensus 68 ~~~e~dvDdeveddd~~~edEed 90 (1024)
T KOG1999|consen 68 IDREADVDDEVEDDDDDEEDEED 90 (1024)
T ss_pred cccccccccccccccchhccCcc
Confidence 44555555554444444444433
Done!