Query 043856
Match_columns 275
No_of_seqs 352 out of 2252
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 15:23:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 5.6E-20 1.9E-24 160.7 11.6 197 66-274 95-309 (328)
2 4fcg_A Uncharacterized protein 99.8 6.9E-20 2.4E-24 160.1 11.9 179 65-254 117-309 (328)
3 1ozn_A Reticulon 4 receptor; N 99.7 1.3E-15 4.4E-20 130.0 16.1 176 69-275 50-234 (285)
4 3rgz_A Protein brassinosteroid 99.7 3.7E-16 1.3E-20 151.0 13.8 206 66-275 433-713 (768)
5 1ogq_A PGIP-2, polygalacturona 99.7 3.5E-16 1.2E-20 135.6 10.2 195 67-274 68-276 (313)
6 3zyi_A Leucine-rich repeat-con 99.6 2.3E-15 7.8E-20 136.8 15.7 193 68-275 92-299 (452)
7 3zyj_A Leucine-rich repeat-con 99.6 3E-15 1E-19 135.5 16.2 193 68-275 81-288 (440)
8 1p9a_G Platelet glycoprotein I 99.6 2.2E-15 7.4E-20 129.3 14.1 175 66-275 24-204 (290)
9 3rgz_A Protein brassinosteroid 99.6 8E-16 2.7E-20 148.7 12.7 55 217-275 631-689 (768)
10 1ogq_A PGIP-2, polygalacturona 99.6 4.3E-16 1.5E-20 135.0 9.2 189 75-275 50-253 (313)
11 1h6u_A Internalin H; cell adhe 99.6 2.4E-15 8.1E-20 130.1 13.4 165 70-275 58-226 (308)
12 2o6q_A Variable lymphocyte rec 99.6 6.7E-15 2.3E-19 124.7 16.0 176 66-275 30-214 (270)
13 2xwt_C Thyrotropin receptor; s 99.6 1.7E-15 5.8E-20 126.0 11.6 173 70-275 50-235 (239)
14 4eco_A Uncharacterized protein 99.6 2.3E-16 7.8E-21 149.4 6.9 159 90-274 198-385 (636)
15 3zyj_A Leucine-rich repeat-con 99.6 6.4E-15 2.2E-19 133.4 15.5 175 68-254 105-287 (440)
16 4ecn_A Leucine-rich repeat pro 99.6 5.3E-16 1.8E-20 151.0 8.1 194 67-274 440-681 (876)
17 4eco_A Uncharacterized protein 99.6 2.2E-16 7.7E-21 149.5 5.3 196 67-275 198-442 (636)
18 3zyi_A Leucine-rich repeat-con 99.6 1.1E-14 3.9E-19 132.2 15.1 175 68-254 116-298 (452)
19 1ozn_A Reticulon 4 receptor; N 99.6 1.8E-14 6.2E-19 122.8 15.5 176 67-275 26-210 (285)
20 3o6n_A APL1; leucine-rich repe 99.6 8.5E-15 2.9E-19 130.4 14.0 77 192-274 246-326 (390)
21 4ecn_A Leucine-rich repeat pro 99.6 1.7E-15 5.9E-20 147.4 9.9 158 90-274 440-627 (876)
22 3vq2_A TLR4, TOLL-like recepto 99.6 3.8E-15 1.3E-19 139.8 11.8 193 70-275 345-554 (606)
23 2id5_A Lingo-1, leucine rich r 99.6 1.9E-14 6.6E-19 131.3 15.8 198 68-274 49-280 (477)
24 2z66_A Variable lymphocyte rec 99.6 7.8E-15 2.7E-19 126.3 11.7 105 160-275 146-257 (306)
25 3oja_B Anopheles plasmodium-re 99.6 1.2E-14 4E-19 136.6 13.7 77 192-274 252-332 (597)
26 3o6n_A APL1; leucine-rich repe 99.6 1.8E-14 6.1E-19 128.3 13.9 101 161-275 245-348 (390)
27 3rfs_A Internalin B, repeat mo 99.6 3E-14 1E-18 120.8 14.7 170 73-275 39-214 (272)
28 4fmz_A Internalin; leucine ric 99.6 1.7E-14 5.7E-19 126.3 13.4 185 70-275 61-252 (347)
29 2z66_A Variable lymphocyte rec 99.6 6.7E-15 2.3E-19 126.7 10.4 173 71-275 48-232 (306)
30 1xku_A Decorin; proteoglycan, 99.6 2E-14 6.7E-19 125.1 13.5 188 70-274 71-271 (330)
31 1h6u_A Internalin H; cell adhe 99.6 1.4E-14 4.8E-19 125.2 12.4 161 74-275 40-204 (308)
32 2z80_A TOLL-like receptor 2, v 99.6 5E-15 1.7E-19 130.1 9.1 196 70-275 71-310 (353)
33 4fmz_A Internalin; leucine ric 99.6 4.5E-14 1.6E-18 123.5 15.0 76 192-275 241-320 (347)
34 2z80_A TOLL-like receptor 2, v 99.6 7.9E-15 2.7E-19 128.9 9.8 198 64-275 43-286 (353)
35 1h6t_A Internalin B; cell adhe 99.6 2E-14 6.9E-19 123.2 11.9 160 74-274 45-208 (291)
36 3v47_A TOLL-like receptor 5B a 99.6 4.2E-14 1.4E-18 128.1 14.5 78 192-275 321-404 (455)
37 3vq2_A TLR4, TOLL-like recepto 99.6 2.1E-14 7.1E-19 134.8 12.1 196 65-275 320-530 (606)
38 2xwt_C Thyrotropin receptor; s 99.5 3.4E-14 1.2E-18 118.1 12.1 169 75-275 31-214 (239)
39 1wwl_A Monocyte differentiatio 99.5 1.5E-14 5.2E-19 125.1 9.9 189 73-275 93-305 (312)
40 4ezg_A Putative uncharacterize 99.5 3.4E-14 1.1E-18 114.8 10.9 146 73-254 42-189 (197)
41 2id5_A Lingo-1, leucine rich r 99.5 7.8E-14 2.7E-18 127.3 14.6 202 66-274 94-328 (477)
42 3v47_A TOLL-like receptor 5B a 99.5 4.8E-14 1.7E-18 127.7 13.0 79 192-275 297-380 (455)
43 3t6q_A CD180 antigen; protein- 99.5 6.5E-14 2.2E-18 131.4 13.8 38 71-108 274-311 (606)
44 2ft3_A Biglycan; proteoglycan, 99.5 8.4E-14 2.9E-18 121.3 13.3 68 68-138 71-140 (332)
45 3oja_B Anopheles plasmodium-re 99.5 7.2E-14 2.4E-18 131.3 13.6 196 71-275 71-310 (597)
46 3bz5_A Internalin-J, INLJ; leu 99.5 2.1E-13 7.3E-18 124.1 16.2 178 70-274 59-241 (457)
47 3oja_A Leucine-rich immune mol 99.5 2E-14 6.7E-19 132.0 9.3 190 72-275 31-246 (487)
48 3t6q_A CD180 antigen; protein- 99.5 9.9E-14 3.4E-18 130.2 14.0 181 66-275 292-485 (606)
49 3o53_A Protein LRIM1, AGAP0063 99.5 3.8E-14 1.3E-18 122.8 9.7 190 72-275 31-246 (317)
50 1p9a_G Platelet glycoprotein I 99.5 1.6E-13 5.6E-18 117.5 13.2 168 71-275 6-181 (290)
51 1m9s_A Internalin B; cell inva 99.5 8.3E-14 2.8E-18 130.9 12.2 145 70-254 60-205 (605)
52 1xku_A Decorin; proteoglycan, 99.5 1.8E-13 6E-18 119.1 13.5 194 66-275 45-249 (330)
53 3bz5_A Internalin-J, INLJ; leu 99.5 1.4E-13 4.8E-18 125.3 12.9 179 70-274 37-220 (457)
54 3oja_A Leucine-rich immune mol 99.5 5.6E-14 1.9E-18 129.0 10.0 189 68-273 51-269 (487)
55 2ft3_A Biglycan; proteoglycan, 99.5 3.2E-13 1.1E-17 117.6 14.2 200 65-275 46-273 (332)
56 1o6v_A Internalin A; bacterial 99.5 1.7E-13 5.8E-18 124.9 13.0 189 71-274 86-295 (466)
57 4ezg_A Putative uncharacterize 99.5 8.5E-14 2.9E-18 112.4 9.3 145 95-275 41-190 (197)
58 2z62_A TOLL-like receptor 4, v 99.5 1.4E-13 4.9E-18 116.6 11.0 186 75-275 28-233 (276)
59 3m19_A Variable lymphocyte rec 99.5 9.7E-13 3.3E-17 110.1 15.8 155 66-254 28-187 (251)
60 2z63_A TOLL-like receptor 4, v 99.5 8.6E-14 2.9E-18 129.4 10.0 189 73-275 323-527 (570)
61 2z62_A TOLL-like receptor 4, v 99.5 3.4E-13 1.2E-17 114.3 12.4 174 70-254 47-232 (276)
62 3o53_A Protein LRIM1, AGAP0063 99.5 5.9E-14 2E-18 121.6 7.8 166 94-275 30-223 (317)
63 4glp_A Monocyte differentiatio 99.5 2E-13 6.8E-18 117.9 10.8 189 74-275 90-303 (310)
64 2z7x_B TOLL-like receptor 1, v 99.5 2.3E-13 8E-18 125.4 11.8 61 69-131 39-101 (520)
65 3rfs_A Internalin B, repeat mo 99.5 8.1E-13 2.8E-17 112.0 14.1 151 70-253 58-212 (272)
66 2z81_A CD282 antigen, TOLL-lik 99.5 1.8E-13 6.1E-18 126.8 11.0 55 75-130 26-84 (549)
67 1wwl_A Monocyte differentiatio 99.5 1.7E-13 5.7E-18 118.5 9.9 187 77-275 65-283 (312)
68 1o6v_A Internalin A; bacterial 99.5 6.4E-13 2.2E-17 121.1 14.0 75 192-275 307-384 (466)
69 4glp_A Monocyte differentiatio 99.5 1.9E-13 6.4E-18 118.1 9.7 191 75-275 64-281 (310)
70 2o6q_A Variable lymphocyte rec 99.5 2.8E-12 9.7E-17 108.4 16.5 166 76-275 17-190 (270)
71 2ast_B S-phase kinase-associat 99.4 8.8E-15 3E-19 127.4 0.7 174 71-274 89-280 (336)
72 1h6t_A Internalin B; cell adhe 99.4 4.7E-13 1.6E-17 114.7 11.3 145 70-254 63-208 (291)
73 3m19_A Variable lymphocyte rec 99.4 1.3E-12 4.3E-17 109.4 13.7 166 76-275 15-188 (251)
74 2z7x_B TOLL-like receptor 1, v 99.4 5.4E-13 1.8E-17 122.9 11.3 188 74-275 246-477 (520)
75 2o6s_A Variable lymphocyte rec 99.4 2E-12 6.7E-17 105.0 13.3 155 74-267 27-190 (208)
76 1jl5_A Outer protein YOPM; leu 99.4 1.8E-13 6E-18 124.6 7.8 184 62-274 21-223 (454)
77 1m9s_A Internalin B; cell inva 99.4 9.5E-13 3.3E-17 123.7 12.9 162 73-275 41-206 (605)
78 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.2E-12 4E-17 122.0 12.7 67 68-137 69-137 (562)
79 4ay9_X Follicle-stimulating ho 99.4 6.6E-13 2.3E-17 116.6 9.6 79 192-275 175-255 (350)
80 3g06_A SSPH2 (leucine-rich rep 99.4 6.9E-12 2.3E-16 118.2 16.9 71 193-275 220-293 (622)
81 2z63_A TOLL-like receptor 4, v 99.4 9.8E-13 3.3E-17 122.3 11.1 192 67-275 274-479 (570)
82 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 3.6E-12 1.2E-16 118.7 14.8 103 160-275 399-506 (562)
83 1ziw_A TOLL-like receptor 3; i 99.4 4.7E-12 1.6E-16 120.4 15.5 202 68-275 398-618 (680)
84 3cvr_A Invasion plasmid antige 99.4 5.3E-12 1.8E-16 117.7 15.4 174 75-275 59-239 (571)
85 3j0a_A TOLL-like receptor 5; m 99.4 3E-12 1E-16 124.9 14.3 177 65-274 17-212 (844)
86 3j0a_A TOLL-like receptor 5; m 99.4 1E-11 3.4E-16 121.2 17.8 78 192-275 288-371 (844)
87 2ast_B S-phase kinase-associat 99.4 1.8E-14 6.3E-19 125.4 -1.5 171 75-275 70-256 (336)
88 1jl5_A Outer protein YOPM; leu 99.4 7.5E-12 2.6E-16 113.8 15.4 57 160-228 149-205 (454)
89 2z81_A CD282 antigen, TOLL-lik 99.4 1.1E-12 3.8E-17 121.5 9.8 133 68-228 43-182 (549)
90 1xeu_A Internalin C; cellular 99.4 3.2E-12 1.1E-16 107.9 11.8 143 71-254 37-180 (263)
91 3g06_A SSPH2 (leucine-rich rep 99.4 1.1E-11 3.9E-16 116.7 15.8 64 66-138 54-118 (622)
92 2ell_A Acidic leucine-rich nuc 99.4 3.8E-12 1.3E-16 99.8 10.4 137 71-236 20-164 (168)
93 1xeu_A Internalin C; cellular 99.4 1E-12 3.6E-17 110.9 7.6 159 75-275 19-181 (263)
94 1ziw_A TOLL-like receptor 3; i 99.4 9.5E-12 3.3E-16 118.2 14.9 35 241-275 475-513 (680)
95 4g8a_A TOLL-like receptor 4; l 99.3 4.6E-12 1.6E-16 118.8 9.6 142 64-236 43-190 (635)
96 2ca6_A RAN GTPase-activating p 99.3 1.5E-13 5.3E-18 122.1 -1.1 199 64-275 49-312 (386)
97 4ay9_X Follicle-stimulating ho 99.3 3.2E-11 1.1E-15 105.8 12.8 177 64-254 42-254 (350)
98 4g8a_A TOLL-like receptor 4; l 99.3 3E-11 1E-15 113.2 13.4 194 72-275 368-576 (635)
99 3e6j_A Variable lymphocyte rec 99.3 2.2E-11 7.4E-16 100.6 11.0 134 65-229 32-170 (229)
100 1dce_A Protein (RAB geranylger 99.3 3.8E-14 1.3E-18 132.4 -6.5 175 62-273 359-567 (567)
101 3e6j_A Variable lymphocyte rec 99.3 7.4E-11 2.5E-15 97.3 13.8 145 76-254 20-167 (229)
102 2ca6_A RAN GTPase-activating p 99.3 4.4E-13 1.5E-17 119.1 -0.4 204 63-275 20-283 (386)
103 1dce_A Protein (RAB geranylger 99.2 2.7E-14 9.4E-19 133.3 -9.4 174 72-275 346-542 (567)
104 2v70_A SLIT-2, SLIT homolog 2 99.2 1.2E-10 4.2E-15 95.4 13.2 143 77-254 13-161 (220)
105 2je0_A Acidic leucine-rich nuc 99.2 7.4E-12 2.5E-16 96.1 5.4 127 72-226 14-148 (149)
106 2xot_A Amphoterin-induced prot 99.2 8.7E-11 3E-15 103.5 12.1 131 76-235 40-179 (361)
107 2v9t_B SLIT homolog 2 protein 99.2 7.3E-11 2.5E-15 96.8 10.7 134 66-229 25-163 (220)
108 2v9t_B SLIT homolog 2 protein 99.2 2.3E-10 7.9E-15 93.8 13.3 143 78-254 14-160 (220)
109 1a9n_A U2A', U2A'; complex (nu 99.2 2.4E-11 8.2E-16 96.1 6.1 132 71-229 15-151 (176)
110 2je0_A Acidic leucine-rich nuc 99.2 3E-11 1E-15 92.7 6.1 102 160-275 38-149 (149)
111 2o6s_A Variable lymphocyte rec 99.2 5.9E-10 2E-14 90.2 14.2 143 78-254 10-156 (208)
112 2ell_A Acidic leucine-rich nuc 99.2 4.7E-11 1.6E-15 93.5 7.3 135 96-260 22-164 (168)
113 2v70_A SLIT-2, SLIT homolog 2 99.1 4.9E-10 1.7E-14 91.8 12.6 134 66-229 25-164 (220)
114 2xot_A Amphoterin-induced prot 99.1 2.2E-10 7.5E-15 100.9 10.2 167 77-274 20-197 (361)
115 3cvr_A Invasion plasmid antige 99.1 4.3E-10 1.5E-14 104.8 10.6 167 67-265 74-253 (571)
116 3goz_A Leucine-rich repeat-con 99.1 1.6E-11 5.4E-16 108.2 0.1 74 195-274 168-261 (362)
117 1ds9_A Outer arm dynein; leuci 99.0 1.3E-12 4.5E-17 105.4 -8.2 123 76-229 24-151 (198)
118 4b8c_D Glucose-repressible alc 99.0 3E-10 1E-14 109.0 6.4 146 75-254 173-324 (727)
119 1z7x_W Ribonuclease inhibitor; 99.0 4E-11 1.4E-15 108.5 -0.0 205 65-274 46-292 (461)
120 1a9n_A U2A', U2A'; complex (nu 99.0 4.5E-10 1.5E-14 88.7 6.0 130 94-254 15-148 (176)
121 2p1m_B Transport inhibitor res 99.0 1.4E-11 4.7E-16 115.0 -3.7 182 72-275 102-323 (594)
122 3goz_A Leucine-rich repeat-con 99.0 8.4E-11 2.9E-15 103.6 0.5 204 66-275 41-293 (362)
123 1w8a_A SLIT protein; signaling 98.9 5.6E-09 1.9E-13 83.6 10.4 122 78-229 11-137 (192)
124 4b8c_D Glucose-repressible alc 98.9 7.2E-10 2.5E-14 106.4 5.9 134 67-230 188-328 (727)
125 1w8a_A SLIT protein; signaling 98.9 6E-09 2E-13 83.4 10.2 102 164-275 29-135 (192)
126 3ogk_B Coronatine-insensitive 98.9 1.1E-10 3.6E-15 109.1 -0.2 35 192-227 218-252 (592)
127 1z7x_W Ribonuclease inhibitor; 98.9 3.6E-11 1.2E-15 108.8 -3.6 206 65-275 160-407 (461)
128 2wfh_A SLIT homolog 2 protein 98.9 1.5E-08 5E-13 81.3 11.2 122 78-229 13-137 (193)
129 2wfh_A SLIT homolog 2 protein 98.9 1.6E-08 5.6E-13 81.0 11.2 101 163-275 30-135 (193)
130 2o6r_A Variable lymphocyte rec 98.9 2.6E-08 8.9E-13 78.4 11.9 123 77-229 9-135 (177)
131 2o6r_A Variable lymphocyte rec 98.8 4E-08 1.4E-12 77.3 11.5 102 163-275 27-133 (177)
132 3ogk_B Coronatine-insensitive 98.8 1E-09 3.4E-14 102.4 1.7 30 245-274 402-444 (592)
133 1ds9_A Outer arm dynein; leuci 98.8 1.1E-10 3.8E-15 94.0 -5.4 129 66-224 39-180 (198)
134 3sb4_A Hypothetical leucine ri 98.7 1.2E-07 4.1E-12 82.1 12.0 98 163-273 225-328 (329)
135 2p1m_B Transport inhibitor res 98.7 9.4E-10 3.2E-14 102.6 -1.9 175 73-273 128-345 (594)
136 2r9u_A Variable lymphocyte rec 98.6 2E-07 6.7E-12 73.4 9.9 50 78-130 15-67 (174)
137 3g39_A Variable lymphocyte rec 98.6 2.9E-07 1E-11 72.0 9.9 37 192-229 76-113 (170)
138 2r9u_A Variable lymphocyte rec 98.5 3.9E-07 1.3E-11 71.7 9.0 57 192-253 55-112 (174)
139 3g39_A Variable lymphocyte rec 98.5 6.4E-07 2.2E-11 70.1 8.9 76 194-274 30-110 (170)
140 2ra8_A Uncharacterized protein 98.4 7.1E-08 2.4E-12 84.9 2.3 162 63-254 127-315 (362)
141 2ra8_A Uncharacterized protein 98.4 7.6E-08 2.6E-12 84.7 1.5 146 67-229 164-318 (362)
142 4fdw_A Leucine rich hypothetic 98.3 1.3E-05 4.4E-10 71.5 14.3 31 76-107 158-189 (401)
143 2ifg_A High affinity nerve gro 98.3 2.4E-06 8.1E-11 74.3 9.3 98 79-204 12-113 (347)
144 3sb4_A Hypothetical leucine ri 98.3 6.9E-06 2.4E-10 70.9 11.9 81 160-253 246-328 (329)
145 2ifg_A High affinity nerve gro 98.2 4.2E-06 1.4E-10 72.7 7.8 84 160-254 27-111 (347)
146 3e4g_A ATP synthase subunit S, 98.1 3.9E-06 1.3E-10 65.9 4.9 71 160-233 81-154 (176)
147 4fdw_A Leucine rich hypothetic 98.0 0.00019 6.3E-09 63.9 14.7 92 76-172 136-234 (401)
148 3e4g_A ATP synthase subunit S, 97.9 2.3E-06 8E-11 67.2 1.5 38 74-112 60-99 (176)
149 3un9_A NLR family member X1; l 97.9 2.5E-07 8.4E-12 81.8 -5.7 160 74-254 71-247 (372)
150 3un9_A NLR family member X1; l 97.5 4.6E-06 1.6E-10 73.6 -2.7 144 65-229 90-250 (372)
151 4fs7_A Uncharacterized protein 97.3 0.0022 7.7E-08 56.5 11.9 75 192-273 295-373 (394)
152 3rw6_A Nuclear RNA export fact 96.8 0.00034 1.2E-08 58.6 1.5 60 72-132 167-232 (267)
153 1io0_A Tropomodulin; LRR prote 96.6 0.00028 9.6E-09 55.6 -0.6 112 160-275 32-160 (185)
154 3rw6_A Nuclear RNA export fact 96.5 0.0014 4.6E-08 54.9 2.8 76 192-272 168-257 (267)
155 1io0_A Tropomodulin; LRR prote 96.4 0.001 3.5E-08 52.4 1.9 45 65-109 26-76 (185)
156 4gt6_A Cell surface protein; l 96.4 0.063 2.1E-06 47.1 13.5 76 192-274 286-365 (394)
157 4fs7_A Uncharacterized protein 96.1 0.079 2.7E-06 46.4 12.6 98 160-271 293-393 (394)
158 4h09_A Hypothetical leucine ri 94.6 0.72 2.5E-05 39.8 13.5 56 192-253 284-340 (379)
159 4h09_A Hypothetical leucine ri 93.7 0.87 3E-05 39.3 12.1 77 191-273 260-340 (379)
160 4gt6_A Cell surface protein; l 90.8 1.3 4.3E-05 38.6 9.4 121 94-253 261-385 (394)
161 3rfe_A Platelet glycoprotein I 89.6 0.29 1E-05 35.8 3.6 35 194-229 31-66 (130)
162 3rfe_A Platelet glycoprotein I 82.8 1.1 3.8E-05 32.5 3.6 33 76-108 32-65 (130)
163 1pgv_A TMD-1, tropomodulin TMD 73.9 0.58 2E-05 36.9 -0.3 106 161-274 38-165 (197)
164 1pgv_A TMD-1, tropomodulin TMD 48.2 8.8 0.0003 30.0 2.1 46 63-108 58-108 (197)
165 2lz0_A Uncharacterized protein 20.7 91 0.0031 21.0 3.4 43 207-254 8-51 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=5.6e-20 Score=160.66 Aligned_cols=197 Identities=21% Similarity=0.318 Sum_probs=131.4
Q ss_pred HHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccc-
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLG- 142 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~- 142 (275)
.+|..+..+++|++|++++|....+|..++++++|++|++++| .+..+| .++.++ |++|++++|+.+..+|..+..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 173 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLAST 173 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence 4566677777888888887776667877788888888888875 344666 466777 888888877767777655432
Q ss_pred --------cccccCCCCC---CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc
Q 043856 143 --------IEEISEDDPS---SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP 211 (275)
Q Consensus 143 --------~~~~~~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp 211 (275)
...+..+.++ -......+..+++|+.|+++++. +..++.. +..+++|+.|++++|.....+|
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~------l~~l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA------IHHLPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG------GGGCTTCCEEECTTCTTCCBCC
T ss_pred cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh------hccCCCCCEEECcCCcchhhhH
Confidence 1111111111 00122235556677777776543 3333321 2257788888888876666677
Q ss_pred cccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc----ccccchhhcCCCCccEEEec
Q 043856 212 DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG----LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 212 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~----l~~lp~~l~~L~~L~~L~l~ 274 (275)
..++.+++|++|++++|+..+.+|. .+..+++|++|+++ .+.+|.+++++++|+.+++.
T Consensus 247 ~~~~~l~~L~~L~L~~n~~~~~~p~----~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 247 PIFGGRAPLKRLILKDCSNLLTLPL----DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCTTCCCCCCEEECTTCTTCCBCCT----TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred HHhcCCCCCCEEECCCCCchhhcch----hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 7777788888888888877777776 56678888888885 66788888888888887764
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=6.9e-20 Score=160.08 Aligned_cols=179 Identities=22% Similarity=0.345 Sum_probs=145.2
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC-CC---------Ccc-cceeeccccccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP-LG---------KLP-LEKLELRDLKSV 133 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~-l~---------~L~-L~~L~l~~~~~l 133 (275)
..+|..++.+++|++|++++|....+|..++++++|++|++++|+....+|. ++ .++ |+.|+++++. +
T Consensus 117 ~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l 195 (328)
T 4fcg_A 117 MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-I 195 (328)
T ss_dssp CCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-C
T ss_pred cchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-c
Confidence 3578888999999999999998878999999999999999999988888875 33 377 9999999874 7
Q ss_pred cccCccccccccccCCCCCC---CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC
Q 043856 134 KRVGNEFLGIEEISEDDPSS---SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL 210 (275)
Q Consensus 134 ~~l~~~~~~~~~~~~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l 210 (275)
+.+|..+.....+..+.++. ......+..+++|+.|++++|.....++. .+..+++|+.|++++|..+..+
T Consensus 196 ~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~------~~~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 196 RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP------IFGGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCC------CTTCCCCCCEEECTTCTTCCBC
T ss_pred CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHH------HhcCCCCCCEEECCCCCchhhc
Confidence 78877655444333332221 12233567899999999999887766664 2337999999999999888889
Q ss_pred ccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 211 PDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 211 p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
|..+.++++|++|++++|+.++.+|. .+..+++|+.+.+.
T Consensus 270 p~~~~~l~~L~~L~L~~n~~~~~iP~----~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 270 PLDIHRLTQLEKLDLRGCVNLSRLPS----LIAQLPANCIILVP 309 (328)
T ss_dssp CTTGGGCTTCCEEECTTCTTCCCCCG----GGGGSCTTCEEECC
T ss_pred chhhhcCCCCCEEeCCCCCchhhccH----HHhhccCceEEeCC
Confidence 99999999999999999999999998 78889999999875
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=1.3e-15 Score=129.97 Aligned_cols=176 Identities=19% Similarity=0.225 Sum_probs=126.1
Q ss_pred HhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccc
Q 043856 69 EALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIE 144 (275)
Q Consensus 69 ~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~ 144 (275)
..+..+++|++|+++++....+ |..+..+++|++|++++|..+..++ .+..++ |++|+++++. +..++..
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~----- 123 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPG----- 123 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT-----
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHh-----
Confidence 4567777888888877766553 6667777888888887765455553 366677 8888887664 4444322
Q ss_pred cccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCccEE
Q 043856 145 EISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQEL 223 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L 223 (275)
.+..+++|+.|+++++. +..++. ..+..+++|+.|++++| +++.+|. .+..+++|++|
T Consensus 124 --------------~~~~l~~L~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 124 --------------LFRGLAALQYLYLQDNA-LQALPD-----DTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRL 182 (285)
T ss_dssp --------------TTTTCTTCCEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred --------------HhhCCcCCCEEECCCCc-ccccCH-----hHhccCCCccEEECCCC-cccccCHHHhcCccccCEE
Confidence 14578899999998764 333332 12336899999999998 6888775 47889999999
Q ss_pred EEecCCCCccCCccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 224 SIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 224 ~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
++++|......+. .+..+++|+.|+++ ++.+|. .+..+++|+.|++++
T Consensus 183 ~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 183 LLHQNRVAHVHPH----AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp ECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred ECCCCcccccCHh----HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence 9999853333344 67789999999996 777764 589999999999874
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.67 E-value=3.7e-16 Score=150.99 Aligned_cols=206 Identities=15% Similarity=0.117 Sum_probs=137.7
Q ss_pred HHHHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCC-CCCcc-cceeeccccccccccCccccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~L~l~~~~~l~~l~~~~~~ 142 (275)
.+|..+..+++|++|++++|.... +|..+..+++|++|++++|.....+|. ++.++ |++|++++|.....+|..+..
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 345666667777777777766553 666666777777777777554445553 55666 777777766533355555443
Q ss_pred cccccCCCCCCC----CCCCCCCCCCcccEeecccccccccccccccc--------------------------------
Q 043856 143 IEEISEDDPSSS----SSSSSVTAFPKLKSLEIKELDLLEEWNYRITR-------------------------------- 186 (275)
Q Consensus 143 ~~~~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~-------------------------------- 186 (275)
...+..+.++.. .....+..+++|+.|+++++.-...+|..+..
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 333333222211 12334667888888888766433222221100
Q ss_pred --------------------------------ccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccC
Q 043856 187 --------------------------------KENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEEL 234 (275)
Q Consensus 187 --------------------------------~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l 234 (275)
...+..+++|+.|++++|.-...+|..++++++|+.|++++|...+.+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 011234678999999998433469999999999999999999766688
Q ss_pred CccccccCCCCCcccceecc----ccccchhhcCCCCccEEEecC
Q 043856 235 PIPEDRRTTDIPRLSSLRIG----LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 235 ~~~~~~~~~~l~~L~~L~l~----l~~lp~~l~~L~~L~~L~l~~ 275 (275)
|. .++.+++|++|+++ .+.+|..++++++|++|++++
T Consensus 673 p~----~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 673 PD----EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CG----GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred Ch----HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 87 78889999999997 448899999999999999974
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.65 E-value=3.5e-16 Score=135.56 Aligned_cols=195 Identities=14% Similarity=0.107 Sum_probs=107.5
Q ss_pred HHHhcCCCCCCCeEEecc-cCCcc-cccccCCCCCCcEEeeecCCCCCcCCC-CCCcc-cceeeccccccccccCccccc
Q 043856 67 LLEALQPPLNVEKLWIIF-YGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~-~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~L~l~~~~~l~~l~~~~~~ 142 (275)
+|..+..+++|++|++++ +.... +|..++++++|++|++++|.....+|. +..++ |++|+++++.....+|..+..
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence 566777777888888874 44432 677777788888888877544445553 66677 777777766522245544333
Q ss_pred cccccCCCCCCC----CCCCCCCCCC-cccEeeccccccccccccccccccccCCCCcccEEeEccCcccC-cCccccCC
Q 043856 143 IEEISEDDPSSS----SSSSSVTAFP-KLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLK-ALPDYLLQ 216 (275)
Q Consensus 143 ~~~~~~~~~~~~----~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~-~lp~~l~~ 216 (275)
...+..+.++.. .....+..++ +|+.|+++++.-....+..+ ..++ |+.|++++| +++ .+|..+..
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~------~~l~-L~~L~Ls~N-~l~~~~~~~~~~ 219 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF------ANLN-LAFVDLSRN-MLEGDASVLFGS 219 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG------GGCC-CSEEECCSS-EEEECCGGGCCT
T ss_pred CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH------hCCc-ccEEECcCC-cccCcCCHHHhc
Confidence 222222222110 1122244454 66666666543222222211 1233 666666665 333 34555666
Q ss_pred CCCccEEEEecCCCCccCCccccccCCCCCcccceecc---cc-ccchhhcCCCCccEEEec
Q 043856 217 TTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LK-VLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 217 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~-~lp~~l~~L~~L~~L~l~ 274 (275)
+++|+.|++++|.. ...+. .+..+++|++|+++ +. .+|.++..+++|+.|+++
T Consensus 220 l~~L~~L~L~~N~l-~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 220 DKNTQKIHLAKNSL-AFDLG----KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp TSCCSEEECCSSEE-CCBGG----GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred CCCCCEEECCCCce-eeecC----cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 66666666666532 22222 24456677777775 43 566667777777777765
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=2.3e-15 Score=136.77 Aligned_cols=193 Identities=16% Similarity=0.205 Sum_probs=109.7
Q ss_pred HHhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccc-cc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEF-LG 142 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~-~~ 142 (275)
+..+..+++|++|++++|....+ |..+..+++|++|+|++| .+..+|. +..++ |++|+++++. +..++... ..
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 169 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNR 169 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTT
T ss_pred HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhc
Confidence 45677778888888887776653 466777888888888874 4555553 66677 8888887664 55555421 11
Q ss_pred cccccCCCCCC-----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCC
Q 043856 143 IEEISEDDPSS-----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQ 216 (275)
Q Consensus 143 ~~~~~~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~ 216 (275)
...+..+.+.. ......+..+++|+.|+++++. +..++ ....+++|+.|++++| .++.+ |..+..
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 240 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP-------NLTPLVGLEELEMSGN-HFPEIRPGSFHG 240 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCC-------CCTTCTTCCEEECTTS-CCSEECGGGGTT
T ss_pred CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccc-------cccccccccEEECcCC-cCcccCcccccC
Confidence 11111111110 0011123344555555554432 22222 1224566666666666 45443 455666
Q ss_pred CCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 217 TTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 217 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
+++|++|++++|. +..++.. .+..+++|+.|+++ ++.+|. .+..+++|+.|++++
T Consensus 241 l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 241 LSSLKKLWVMNSQ-VSLIERN---AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred ccCCCEEEeCCCc-CceECHH---HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 7777777776653 3333221 45667888888885 666664 456778888888763
No 7
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=3e-15 Score=135.51 Aligned_cols=193 Identities=18% Similarity=0.249 Sum_probs=112.9
Q ss_pred HHhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcc-ccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNE-FLG 142 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~-~~~ 142 (275)
+..+..+++|++|++++|....+ |..+..+++|++|+|++| .+..++. +..++ |++|+++++. +..++.. |..
T Consensus 81 ~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~ 158 (440)
T 3zyj_A 81 VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNR 158 (440)
T ss_dssp TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTT
T ss_pred HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhh
Confidence 35677788888888888876664 456778888888888884 5555553 66777 8888888764 5555542 111
Q ss_pred cccccCCCCCC-----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCC
Q 043856 143 IEEISEDDPSS-----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQ 216 (275)
Q Consensus 143 ~~~~~~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~ 216 (275)
...+..+.+.. ......+..+++|+.|+++++ .+..++ .+..+++|+.|++++| +++.+ |..+..
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 229 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-------NLTPLIKLDELDLSGN-HLSAIRPGSFQG 229 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-------CCTTCSSCCEEECTTS-CCCEECTTTTTT
T ss_pred CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-------ccCCCcccCEEECCCC-ccCccChhhhcc
Confidence 11111111110 001112334555555555543 222222 1224566666666666 45543 455666
Q ss_pred CCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 217 TTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 217 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
+++|++|++++| .+..++.. .+..+++|+.|+++ ++.+|. .+..+++|+.|++++
T Consensus 230 l~~L~~L~L~~n-~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 230 LMHLQKLWMIQS-QIQVIERN---AFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CTTCCEEECTTC-CCCEECTT---SSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred CccCCEEECCCC-ceeEEChh---hhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 677777776665 33333321 45667888888885 666664 457788888888763
No 8
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=2.2e-15 Score=129.27 Aligned_cols=175 Identities=23% Similarity=0.227 Sum_probs=135.2
Q ss_pred HHHHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcccccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
.+|..+. ++++.|+++++.... .|..+..+++|++|++++ +.+..++..+.++ |+.|+++++. ++.+|..
T Consensus 24 ~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~---- 95 (290)
T 1p9a_G 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVDGTLPVLGTLDLSHNQ-LQSLPLL---- 95 (290)
T ss_dssp SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEECCSCCTTCCEEECCSSC-CSSCCCC----
T ss_pred cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccCCCCCCcCCEEECCCCc-CCcCchh----
Confidence 3555543 689999999988776 456788999999999998 4566666667788 9999999774 7777654
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccE
Q 043856 144 EEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQE 222 (275)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~ 222 (275)
+..+++|+.|+++++. +..++. +.+..+++|+.|++++| +++.+|.. +..+++|+.
T Consensus 96 ----------------~~~l~~L~~L~l~~N~-l~~l~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 96 ----------------GQTLPALTVLDVSFNR-LTSLPL-----GALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp ----------------TTTCTTCCEEECCSSC-CCCCCS-----STTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred ----------------hccCCCCCEEECCCCc-CcccCH-----HHHcCCCCCCEEECCCC-CCCccChhhcccccCCCE
Confidence 4578899999998753 444432 22347899999999998 68887765 467899999
Q ss_pred EEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 223 LSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 223 L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
|++++| .+..+|.. .+..+++|++|+++ ++.+|.++..+++|+.|++++
T Consensus 153 L~L~~N-~l~~l~~~---~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 153 LSLANN-NLTELPAG---LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp EECTTS-CCSCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred EECCCC-cCCccCHH---HhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence 999887 56677762 35678999999996 889999888889999998864
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.64 E-value=8e-16 Score=148.66 Aligned_cols=55 Identities=20% Similarity=0.214 Sum_probs=35.8
Q ss_pred CCCccEEEEecCCCCccCCccccccCCCCCcccceecc---c-cccchhhcCCCCccEEEecC
Q 043856 217 TTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---L-KVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 217 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l-~~lp~~l~~L~~L~~L~l~~ 275 (275)
+++|+.|++++|...+.+|. .++.+++|+.|+++ + +.+|..++++++|+.|++++
T Consensus 631 l~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPK----EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred cccccEEECcCCcccccCCH----HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 44556666666544445555 56667777777775 3 36777777788888887763
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=4.3e-16 Score=135.03 Aligned_cols=189 Identities=13% Similarity=0.106 Sum_probs=114.2
Q ss_pred CCCCeEEecccCCc---ccccccCCCCCCcEEeeec-CCCCCcCC-CCCCcc-cceeeccccccccccCccccccccccC
Q 043856 75 LNVEKLWIIFYGGN---ILPKWLTSLTNLRDLKLVF-CENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 75 ~~L~~L~l~~~~~~---~lp~~l~~l~~L~~L~L~~-c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
.+++.|+++++... .+|..+.++++|++|++++ +.....+| .++.++ |++|+++++.....+|..+.....+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 58999999998876 4899999999999999996 55555666 488899 999999988633366665443332222
Q ss_pred CCCCC----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCC-cccEEeEccCcccC-cCccccCCCCCccE
Q 043856 149 DDPSS----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMP-RLSSLKVGSCNKLK-ALPDYLLQTTALQE 222 (275)
Q Consensus 149 ~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~-~L~~L~l~~c~~l~-~lp~~l~~l~~L~~ 222 (275)
+.++. ......+..+++|+.|+++++.-...++..+ ..++ +|+.|++++| ++. .+|..+..++ |++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l------~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY------GSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG------GCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH------hhhhhcCcEEECcCC-eeeccCChHHhCCc-ccE
Confidence 22221 1122334445555555555443221222211 1344 5666666655 333 3555555554 666
Q ss_pred EEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 223 LSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 223 L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
|++++|..-...+. .+..+++|++|+++ +...+..+..+++|++|++++
T Consensus 202 L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 202 VDLSRNMLEGDASV----LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253 (313)
T ss_dssp EECCSSEEEECCGG----GCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCS
T ss_pred EECcCCcccCcCCH----HHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcC
Confidence 66665532222232 45667888888885 544444577778888888763
No 11
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=2.4e-15 Score=130.09 Aligned_cols=165 Identities=16% Similarity=0.230 Sum_probs=122.2
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccC
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
.+..+++|++|++++|....+|. +..+++|++|++++| .+..++.+..++ |+.|++++|. +..++.
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~---------- 124 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTSTQ-ITDVTP---------- 124 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCGGGTTCTTCCEEECTTSC-CCCCGG----------
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCchhhcCCCCCCEEECCCCC-CCCchh----------
Confidence 46667788888888877666666 778888888888884 456667777777 8888888764 544432
Q ss_pred CCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecC
Q 043856 149 DDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 149 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 228 (275)
+..+++|+.|+++++. +..++. ...+++|+.|++++| +++.++. +..+++|+.|++++|
T Consensus 125 -----------l~~l~~L~~L~l~~n~-l~~~~~-------l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 125 -----------LAGLSNLQVLYLDLNQ-ITNISP-------LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp -----------GTTCTTCCEEECCSSC-CCCCGG-------GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred -----------hcCCCCCCEEECCCCc-cCcCcc-------ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCC
Confidence 4478889999998763 333332 226889999999988 6888876 788999999999887
Q ss_pred CCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 229 ENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 229 ~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.+..++. +..+++|++|+++ +..+| .+..+++|+.|++++
T Consensus 184 -~l~~~~~-----l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 184 -KISDISP-----LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN 226 (308)
T ss_dssp -CCCCCGG-----GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred -ccCcChh-----hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccC
Confidence 4555543 5678899999996 77776 478899999998863
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=6.7e-15 Score=124.70 Aligned_cols=176 Identities=24% Similarity=0.318 Sum_probs=131.1
Q ss_pred HHHHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFL 141 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~ 141 (275)
.+|..+. ++|++|+++++....+|. .+.++++|++|++++| .+..+|. +..++ |++|+++++. +..++...
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~- 104 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK-LQALPIGV- 104 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTT-
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhH-
Confidence 3555443 689999999988777654 6889999999999984 5556664 56788 9999999775 66665431
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCc
Q 043856 142 GIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTAL 220 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L 220 (275)
+..+++|+.|++.++. +..++. ..+..+++|+.|++++| +++.+|.. +..+++|
T Consensus 105 ------------------~~~l~~L~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 159 (270)
T 2o6q_A 105 ------------------FDQLVNLAELRLDRNQ-LKSLPP-----RVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSL 159 (270)
T ss_dssp ------------------TTTCSSCCEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred ------------------cccccCCCEEECCCCc-cCeeCH-----HHhCcCcCCCEEECCCC-cCCccCHhHccCCccc
Confidence 3468899999998753 333332 12336899999999998 68887765 6789999
Q ss_pred cEEEEecCCCCccCCccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 221 QELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 221 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
++|++++| .+..++.. .+..+++|++|+++ ++.+|. .+..+++|+.|++++
T Consensus 160 ~~L~L~~n-~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 160 KELRLYNN-QLKRVPEG---AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CEEECCSS-CCSCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ceeEecCC-cCcEeChh---HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 99999887 45555542 46678999999996 777775 478899999998864
No 13
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=1.7e-15 Score=125.99 Aligned_cols=173 Identities=17% Similarity=0.203 Sum_probs=109.5
Q ss_pred hcCCCCCCCeEEecccC-Cccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccccccc
Q 043856 70 ALQPPLNVEKLWIIFYG-GNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFLGIE 144 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~-~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~~~~ 144 (275)
.+..+++|++|+++++. ...+|. .+..+++|++|++++|+.+..++. +..++ |++|+++++. ++.+|.
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~------ 122 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD------ 122 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC------
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc------
Confidence 34455555555555554 333332 344555555555555444444442 33455 5555555443 444432
Q ss_pred cccCCCCCCCCCCCCCCCCCccc---EeeccccccccccccccccccccCCCCccc-EEeEccCcccCcCccccCCCCCc
Q 043856 145 EISEDDPSSSSSSSSVTAFPKLK---SLEIKELDLLEEWNYRITRKENISIMPRLS-SLKVGSCNKLKALPDYLLQTTAL 220 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~l~~L~---~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~-~L~l~~c~~l~~lp~~l~~l~~L 220 (275)
+..+++|+ .|++++++.+..++. ..+..+++|+ .|+++++ +++.+|......++|
T Consensus 123 ---------------~~~l~~L~~L~~L~l~~N~~l~~i~~-----~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L 181 (239)
T 2xwt_C 123 ---------------LTKVYSTDIFFILEITDNPYMTSIPV-----NAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKL 181 (239)
T ss_dssp ---------------CTTCCBCCSEEEEEEESCTTCCEECT-----TTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEE
T ss_pred ---------------cccccccccccEEECCCCcchhhcCc-----ccccchhcceeEEEcCCC-CCcccCHhhcCCCCC
Confidence 23455555 888887655655553 1233688899 9999887 678888766556889
Q ss_pred cEEEEecCCCCccCCccccccCCCC-Ccccceecc---ccccchhhcCCCCccEEEecC
Q 043856 221 QELSIYSCENLEELPIPEDRRTTDI-PRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 221 ~~L~l~~c~~l~~l~~~~~~~~~~l-~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
++|++++|+.++.++.. .+..+ ++|+.|+++ ++.+|.. .+++|+.|++++
T Consensus 182 ~~L~L~~n~~l~~i~~~---~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKD---AFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp EEEECTTCTTCCEECTT---TTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTT
T ss_pred CEEEcCCCCCcccCCHH---HhhccccCCcEEECCCCccccCChh--HhccCceeeccC
Confidence 99999988667777652 45667 899999996 7788865 688888888864
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.63 E-value=2.3e-16 Score=149.41 Aligned_cols=159 Identities=17% Similarity=0.222 Sum_probs=98.1
Q ss_pred cccccCCCCCCcEEeeecCCCCCc-----------------CCC-CC--Ccc-cceeeccccccccccCccccccccccC
Q 043856 90 LPKWLTSLTNLRDLKLVFCENCEH-----------------LPP-LG--KLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 90 lp~~l~~l~~L~~L~L~~c~~~~~-----------------lp~-l~--~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
+|.+++++++|++|++++|..... +|. ++ .++ |++|++++|.....+|..
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~--------- 268 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF--------- 268 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT---------
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH---------
Confidence 677788888888888888653332 664 66 788 888888888766666655
Q ss_pred CCCCCCCCCCCCCCCCcccEeecccccccc--ccccccccccccCCCCcccEEeEccCcccCcCcc--ccCCCCCccEEE
Q 043856 149 DDPSSSSSSSSVTAFPKLKSLEIKELDLLE--EWNYRITRKENISIMPRLSSLKVGSCNKLKALPD--YLLQTTALQELS 224 (275)
Q Consensus 149 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~--~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~ 224 (275)
+..+++|+.|+++++..+. .+|..++.-.....+++|+.|++++| +++.+|. .++++++|++|+
T Consensus 269 -----------l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~ 336 (636)
T 4eco_A 269 -----------LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLE 336 (636)
T ss_dssp -----------TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEE
T ss_pred -----------HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEe
Confidence 4467778888877765333 24432221000112367777777776 5667776 677777777777
Q ss_pred EecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCC-ccEEEec
Q 043856 225 IYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTM-LQELSIS 274 (275)
Q Consensus 225 l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~-L~~L~l~ 274 (275)
+++|..-..+| .+..+++|++|+++ +..+|..+..+++ |+.|+++
T Consensus 337 L~~N~l~g~ip-----~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 337 CLYNQLEGKLP-----AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp CCSCCCEEECC-----CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECC
T ss_pred CcCCcCccchh-----hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEcc
Confidence 77664322454 13445555555554 4455555555555 5555554
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.62 E-value=6.4e-15 Score=133.36 Aligned_cols=175 Identities=19% Similarity=0.272 Sum_probs=128.2
Q ss_pred HHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcc-ccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNE-FLG 142 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~-~~~ 142 (275)
+..+..+++|++|++++|....+|. .+..+++|++|++++| .+..++. +..++ |+.|++++++.+..++.. |.+
T Consensus 105 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 183 (440)
T 3zyj_A 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183 (440)
T ss_dssp GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred hhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc
Confidence 4678889999999999998777665 6789999999999994 4555553 67788 999999988777777654 333
Q ss_pred cccccCCCCCC--CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCC
Q 043856 143 IEEISEDDPSS--SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTA 219 (275)
Q Consensus 143 ~~~~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~ 219 (275)
...+..+.++. ....+.+..+++|+.|+++++. +..+.. ..+..+++|+.|++.+| +++.+ |..+..+++
T Consensus 184 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNH-LSAIRP-----GSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQS 256 (440)
T ss_dssp CSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSC-CCEECT-----TTTTTCTTCCEEECTTC-CCCEECTTSSTTCTT
T ss_pred ccccCeecCCCCcCccccccCCCcccCEEECCCCc-cCccCh-----hhhccCccCCEEECCCC-ceeEEChhhhcCCCC
Confidence 33333333321 1122346778899999999873 444431 23347899999999998 67775 556888999
Q ss_pred ccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 220 LQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 220 L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
|+.|++++| .+..++.. .+..+++|+.|+++
T Consensus 257 L~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 257 LVEINLAHN-NLTLLPHD---LFTPLHHLERIHLH 287 (440)
T ss_dssp CCEEECTTS-CCCCCCTT---TTSSCTTCCEEECC
T ss_pred CCEEECCCC-CCCccChh---HhccccCCCEEEcC
Confidence 999999997 56666652 45678999999995
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=5.3e-16 Score=151.03 Aligned_cols=194 Identities=16% Similarity=0.214 Sum_probs=121.6
Q ss_pred HHHhcCCCCCCCeEEecccCCcc------------------cccccC--CCCCCcEEeeecCCCCCcCCC-CCCcc-cce
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNI------------------LPKWLT--SLTNLRDLKLVFCENCEHLPP-LGKLP-LEK 124 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~------------------lp~~l~--~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~ 124 (275)
+|..++.+++|++|++++|.... +|..++ ++++|++|++++|.....+|. ++.++ |+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78899999999999999998887 899988 999999999999888888884 88899 999
Q ss_pred eecccccccc--ccCccccccc-------cccCCCCCC---CCCCC--CCCCCCcccEeecccccccccccccccccccc
Q 043856 125 LELRDLKSVK--RVGNEFLGIE-------EISEDDPSS---SSSSS--SVTAFPKLKSLEIKELDLLEEWNYRITRKENI 190 (275)
Q Consensus 125 L~l~~~~~l~--~l~~~~~~~~-------~~~~~~~~~---~~~~~--~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~ 190 (275)
|+++++..+. .+|..+.... .+..+.++. ..... .+..+++|+.|+++++. +..++ .+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-------~~ 591 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-------AF 591 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-------CC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-------hh
Confidence 9999886344 3665443221 111111111 01122 34556666666666543 22332 12
Q ss_pred CCCCcccEEeEccCcccCcCccccCCCCC-ccEEEEecCCCCccCCccccccCCCC--Ccccceecc---cc----ccch
Q 043856 191 SIMPRLSSLKVGSCNKLKALPDYLLQTTA-LQELSIYSCENLEELPIPEDRRTTDI--PRLSSLRIG---LK----VLPD 260 (275)
Q Consensus 191 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~-L~~L~l~~c~~l~~l~~~~~~~~~~l--~~L~~L~l~---l~----~lp~ 260 (275)
..+++|+.|++++| ++..+|..+..+++ |+.|++++|. +..+|. .+..+ ++|+.|+++ +. .+|.
T Consensus 592 ~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~----~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 592 GTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPN----IFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp CTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCS----CCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred cCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCC-CCcCch----hhhccccCCCCEEECcCCcCCCccccchh
Confidence 25666667777666 45566666666666 7777766653 445554 33333 336666664 22 1222
Q ss_pred hhc--CCCCccEEEec
Q 043856 261 YLL--RTTMLQELSIS 274 (275)
Q Consensus 261 ~l~--~L~~L~~L~l~ 274 (275)
.++ .+++|+.|+++
T Consensus 666 ~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 666 SMDDYKGINASTVTLS 681 (876)
T ss_dssp CTTTCCCCCEEEEECC
T ss_pred hhccccCCCcCEEEcc
Confidence 222 23467777765
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.61 E-value=2.2e-16 Score=149.48 Aligned_cols=196 Identities=16% Similarity=0.213 Sum_probs=145.0
Q ss_pred HHHhcCCCCCCCeEEecccCCcc------------------cccccC--CCCCCcEEeeecCCCCCcCCC-CCCcc-cce
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNI------------------LPKWLT--SLTNLRDLKLVFCENCEHLPP-LGKLP-LEK 124 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~------------------lp~~l~--~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~ 124 (275)
+|..++.+++|++|++++|.... +|..++ ++++|++|++++|.....+|. ++.++ |+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 78899999999999999999888 899999 999999999999888888884 88899 999
Q ss_pred eecccccccc--ccCcccccc------ccccCCCCCC---CCCCC--CCCCCCcccEeeccccccccccccccccccccC
Q 043856 125 LELRDLKSVK--RVGNEFLGI------EEISEDDPSS---SSSSS--SVTAFPKLKSLEIKELDLLEEWNYRITRKENIS 191 (275)
Q Consensus 125 L~l~~~~~l~--~l~~~~~~~------~~~~~~~~~~---~~~~~--~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~ 191 (275)
|+++++..+. .+|..+... ..+..+.++. ..... .+..+++|+.|+++++.-...++ .+ .
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~------~ 350 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF------G 350 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC------E
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh------C
Confidence 9999886344 466554332 2222222221 12223 46678888888888764322444 12 2
Q ss_pred CCCcccEEeEccCcccCcCccccCCCCC-ccEEEEecCCCCccCCccccccCCC--CCcccceecc---c-cccchhhc-
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLLQTTA-LQELSIYSCENLEELPIPEDRRTTD--IPRLSSLRIG---L-KVLPDYLL- 263 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~-L~~L~l~~c~~l~~l~~~~~~~~~~--l~~L~~L~l~---l-~~lp~~l~- 263 (275)
.+++|+.|++++| +++.+|..+..+++ |++|++++|. +..+|. .+.. +++|++|+++ + +.+|..+.
T Consensus 351 ~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~----~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 424 (636)
T 4eco_A 351 SEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPN----IFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424 (636)
T ss_dssp EEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC-CSSCCS----CCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred CCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc-Ccccch----hhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence 5788999999888 67788888888998 9999998874 557776 3444 4489999996 3 34566677
Q ss_pred ------CCCCccEEEecC
Q 043856 264 ------RTTMLQELSISE 275 (275)
Q Consensus 264 ------~L~~L~~L~l~~ 275 (275)
.+++|+.|++++
T Consensus 425 ~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSN 442 (636)
T ss_dssp TCSSCCCCCCEEEEECCS
T ss_pred cccccccCCCCCEEECcC
Confidence 778999998864
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.60 E-value=1.1e-14 Score=132.19 Aligned_cols=175 Identities=21% Similarity=0.261 Sum_probs=128.8
Q ss_pred HHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcc-ccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNE-FLG 142 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~-~~~ 142 (275)
+..+..+++|++|++++|....+|. .+..+++|++|++++| .+..+|. +..++ |+.|++++|+.++.++.. +.+
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 194 (452)
T 3zyi_A 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC
Confidence 4678889999999999998777665 4778999999999995 4556654 77888 999999988888888764 333
Q ss_pred cccccCCCCCC--CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCC
Q 043856 143 IEEISEDDPSS--SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTA 219 (275)
Q Consensus 143 ~~~~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~ 219 (275)
...+..+.++. ....+.+..+++|+.|+++++. +..+.. ..+..+++|+.|++++| ++..+ |..+..+++
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH-FPEIRP-----GSFHGLSSLKKLWVMNS-QVSLIERNAFDGLAS 267 (452)
T ss_dssp CTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC-CSEECG-----GGGTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred CCCCCEEECCCCcccccccccccccccEEECcCCc-CcccCc-----ccccCccCCCEEEeCCC-cCceECHHHhcCCCC
Confidence 33333333221 1122456778999999999864 333321 12337899999999998 67765 567888999
Q ss_pred ccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 220 LQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 220 L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
|+.|++++| .+..++.. .+..+++|+.|+++
T Consensus 268 L~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 268 LVELNLAHN-NLSSLPHD---LFTPLRYLVELHLH 298 (452)
T ss_dssp CCEEECCSS-CCSCCCTT---SSTTCTTCCEEECC
T ss_pred CCEEECCCC-cCCccChH---HhccccCCCEEEcc
Confidence 999999998 56666652 45678999999995
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=1.8e-14 Score=122.81 Aligned_cols=176 Identities=18% Similarity=0.210 Sum_probs=135.2
Q ss_pred HHHhcCCCCCCCeEEecccCCcccc-cccCCCCCCcEEeeecCCCCCcC-C-CCCCcc-cceeeccccccccccCccccc
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNILP-KWLTSLTNLRDLKLVFCENCEHL-P-PLGKLP-LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~c~~~~~l-p-~l~~L~-L~~L~l~~~~~l~~l~~~~~~ 142 (275)
+|..+ .++|++|+++++....+| ..+..+++|++|++++| .+..+ | .+..++ |++|+++++..++.++...
T Consensus 26 ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~-- 100 (285)
T 1ozn_A 26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT-- 100 (285)
T ss_dssp CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT--
T ss_pred CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHH--
Confidence 45443 469999999999887755 56889999999999996 44444 3 477889 9999999886566664321
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCcc
Q 043856 143 IEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQ 221 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~ 221 (275)
+..+++|+.|++.++. +..++. ..+..+++|+.|++++| .++.+|.. +..+++|+
T Consensus 101 -----------------~~~l~~L~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 101 -----------------FHGLGRLHTLHLDRCG-LQELGP-----GLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLT 156 (285)
T ss_dssp -----------------TTTCTTCCEEECTTSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred -----------------hcCCcCCCEEECCCCc-CCEECH-----hHhhCCcCCCEEECCCC-cccccCHhHhccCCCcc
Confidence 4578999999999865 333321 12336899999999998 68887654 78899999
Q ss_pred EEEEecCCCCccCCccccccCCCCCcccceecc---cccc-chhhcCCCCccEEEecC
Q 043856 222 ELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVL-PDYLLRTTMLQELSISE 275 (275)
Q Consensus 222 ~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~l-p~~l~~L~~L~~L~l~~ 275 (275)
+|++++| .+..++.. .+..+++|++|+++ +..+ |..+..+++|+.|++++
T Consensus 157 ~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 157 HLFLHGN-RISSVPER---AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp EEECCSS-CCCEECTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEECCCC-cccccCHH---HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 9999987 56666652 46779999999996 5555 78899999999999874
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.60 E-value=8.5e-15 Score=130.36 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=43.4
Q ss_pred CCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCC
Q 043856 192 IMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTM 267 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~ 267 (275)
.+++|+.|++++| .++.+ |..+..+++|++|++++| .+..++. ....+++|++|+++ +..+|..++.+++
T Consensus 246 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 246 NYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVALNL----YGQPIPTLKVLDLSHNHLLHVERNQPQFDR 319 (390)
T ss_dssp GCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CCCEEEC----SSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred CCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cCcccCc----ccCCCCCCCEEECCCCcceecCccccccCc
Confidence 3556666666665 34443 445556666666666655 3444443 33456666666664 5566655555666
Q ss_pred ccEEEec
Q 043856 268 LQELSIS 274 (275)
Q Consensus 268 L~~L~l~ 274 (275)
|+.|+++
T Consensus 320 L~~L~L~ 326 (390)
T 3o6n_A 320 LENLYLD 326 (390)
T ss_dssp CSEEECC
T ss_pred CCEEECC
Confidence 6666654
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=1.7e-15 Score=147.43 Aligned_cols=158 Identities=19% Similarity=0.233 Sum_probs=100.1
Q ss_pred cccccCCCCCCcEEeeecCCCCC-----------------cCCC-CC--Ccc-cceeeccccccccccCccccccccccC
Q 043856 90 LPKWLTSLTNLRDLKLVFCENCE-----------------HLPP-LG--KLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 90 lp~~l~~l~~L~~L~L~~c~~~~-----------------~lp~-l~--~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
+|..++++++|++|+|++|.... .+|. ++ .++ |+.|++++|.....+|..
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~--------- 510 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF--------- 510 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG---------
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH---------
Confidence 78888999999999999965444 1774 66 899 999999998877778866
Q ss_pred CCCCCCCCCCCCCCCCcccEeeccccccccc--ccccccccc-ccCCCCcccEEeEccCcccCcCcc--ccCCCCCccEE
Q 043856 149 DDPSSSSSSSSVTAFPKLKSLEIKELDLLEE--WNYRITRKE-NISIMPRLSSLKVGSCNKLKALPD--YLLQTTALQEL 223 (275)
Q Consensus 149 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~i~~~~-~~~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L 223 (275)
+..+++|+.|+++++..+.. +|..++... ....+++|+.|++++| ++..+|. .++++++|+.|
T Consensus 511 -----------l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 511 -----------LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLL 578 (876)
T ss_dssp -----------GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEE
T ss_pred -----------HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEE
Confidence 44677777777776652322 332221110 1224556666666666 4556666 66666666666
Q ss_pred EEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCC-ccEEEec
Q 043856 224 SIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTM-LQELSIS 274 (275)
Q Consensus 224 ~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~-L~~L~l~ 274 (275)
++++|. +..+| .+..+++|+.|+++ +..+|..+..+++ |+.|+++
T Consensus 579 ~Ls~N~-l~~lp-----~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 579 DCVHNK-VRHLE-----AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp ECTTSC-CCBCC-----CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECC
T ss_pred ECCCCC-cccch-----hhcCCCcceEEECcCCccccchHHHhhccccCCEEECc
Confidence 666653 33444 24455666666664 4555655555655 6666554
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.60 E-value=3.8e-15 Score=139.77 Aligned_cols=193 Identities=17% Similarity=0.129 Sum_probs=118.1
Q ss_pred hcCCCCCCCeEEecccCCccc---ccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCc--cccc
Q 043856 70 ALQPPLNVEKLWIIFYGGNIL---PKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGN--EFLG 142 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~--~~~~ 142 (275)
.+..+++|++|++++|..... |..+..+++|++|++++|. +..+| .+..++ |+.|+++++. +..++. .+..
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~ 422 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHST-LKRVTEFSAFLS 422 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSE-EESTTTTTTTTT
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCc-cCCccChhhhhc
Confidence 445566677777766654432 5555566666666666643 22233 355556 6666666554 322221 2222
Q ss_pred cccccCCCCCC----CCCCCCCCCCCcccEeeccccccccc-cccccccccccCCCCcccEEeEccCcccCc-CccccCC
Q 043856 143 IEEISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLEE-WNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQ 216 (275)
Q Consensus 143 ~~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~-l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~ 216 (275)
...+..+.++. ......+..+++|+.|++.++.-... .+. .+..+++|+.|++++| +++. .|..+..
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 495 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN------VFANTTNLTFLDLSKC-QLEQISWGVFDT 495 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS------CCTTCTTCCEEECTTS-CCCEECTTTTTT
T ss_pred cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH------hhccCCCCCEEECCCC-cCCccChhhhcc
Confidence 22111111111 01122355778888888887653321 222 2336889999999998 5665 4566888
Q ss_pred CCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCC-CccEEEecC
Q 043856 217 TTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTT-MLQELSISE 275 (275)
Q Consensus 217 l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~-~L~~L~l~~ 275 (275)
+++|++|++++|+.....|. .+..+++|++|+++ ++.+|..+..++ +|+.|++++
T Consensus 496 l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 496 LHRLQLLNMSHNNLLFLDSS----HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CTTCCEEECCSSCCSCEEGG----GTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCS
T ss_pred cccCCEEECCCCcCCCcCHH----HccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccC
Confidence 99999999998854433354 67788999999996 888888888886 599998864
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.59 E-value=1.9e-14 Score=131.30 Aligned_cols=198 Identities=18% Similarity=0.182 Sum_probs=104.9
Q ss_pred HHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeecccccccccc-Cccccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRV-GNEFLG 142 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l-~~~~~~ 142 (275)
+..+..+++|++|++++|.... .|..+.++++|++|++++| .+..+|. +..++ |++|+++++. +..+ +..+..
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~ 126 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQD 126 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTT
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCc-cccCChhHccc
Confidence 4567788888888888887666 4777888888888888884 4555653 56778 8888888765 4443 333322
Q ss_pred cccccCCCCCC----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc-cccCCC
Q 043856 143 IEEISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP-DYLLQT 217 (275)
Q Consensus 143 ~~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l 217 (275)
...+..+.+.. ......+..+++|+.|++.++. +..++. ..+..+++|+.|++.++ .+..++ ..+..+
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-----~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l 199 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPT-----EALSHLHGLIVLRLRHL-NINAIRDYSFKRL 199 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCH-----HHHTTCTTCCEEEEESC-CCCEECTTCSCSC
T ss_pred cccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccCh-----hHhcccCCCcEEeCCCC-cCcEeChhhcccC
Confidence 22222221111 0112234556677777766542 222221 01113445555555444 233322 234444
Q ss_pred CCccEEEEecCCCCccCCcccc--------------------ccCCCCCcccceecc---ccccc-hhhcCCCCccEEEe
Q 043856 218 TALQELSIYSCENLEELPIPED--------------------RRTTDIPRLSSLRIG---LKVLP-DYLLRTTMLQELSI 273 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~~~~--------------------~~~~~l~~L~~L~l~---l~~lp-~~l~~L~~L~~L~l 273 (275)
++|+.|++++|+.+..++.... ..+..+++|++|+++ +..++ ..+..+++|+.|++
T Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (477)
T 2id5_A 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279 (477)
T ss_dssp TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEEC
T ss_pred cccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEEC
Confidence 5555555555444333332100 023445666666664 44443 24556666666666
Q ss_pred c
Q 043856 274 S 274 (275)
Q Consensus 274 ~ 274 (275)
+
T Consensus 280 ~ 280 (477)
T 2id5_A 280 V 280 (477)
T ss_dssp C
T ss_pred C
Confidence 4
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.59 E-value=7.8e-15 Score=126.27 Aligned_cols=105 Identities=17% Similarity=0.194 Sum_probs=72.3
Q ss_pred CCCCCcccEeecccccccc-ccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCccCCcc
Q 043856 160 VTAFPKLKSLEIKELDLLE-EWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEELPIP 237 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~-~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~ 237 (275)
+..+++|+.|++.++.-.. ..+. .+..+++|+.|++++| +++.+ |..+..+++|++|++++|. +..++..
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~------~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 217 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPD------IFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTF 217 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECS------CCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSG
T ss_pred cccCcCCCEEECCCCccccccchh------HHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChh
Confidence 4567888888887764222 1221 2336888999999888 57665 6677888899999988874 4444432
Q ss_pred ccccCCCCCcccceecc---cc-ccchhhcCC-CCccEEEecC
Q 043856 238 EDRRTTDIPRLSSLRIG---LK-VLPDYLLRT-TMLQELSISE 275 (275)
Q Consensus 238 ~~~~~~~l~~L~~L~l~---l~-~lp~~l~~L-~~L~~L~l~~ 275 (275)
.+..+++|++|+++ +. ..|..+..+ ++|+.|++++
T Consensus 218 ---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 218 ---PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp ---GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred ---hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 45678889999986 44 345667777 4889888864
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=1.2e-14 Score=136.63 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=48.6
Q ss_pred CCCcccEEeEccCcccCc-CccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCC
Q 043856 192 IMPRLSSLKVGSCNKLKA-LPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTM 267 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~ 267 (275)
.+++|+.|++++| .+.. .|..++.+++|+.|++++| .+..+|. .+..+++|++|+++ +..+|..++.+++
T Consensus 252 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~ 325 (597)
T 3oja_B 252 NYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVALNL----YGQPIPTLKVLDLSHNHLLHVERNQPQFDR 325 (597)
T ss_dssp GCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTS-CCCEEEC----SSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred cCCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCC-CCCCCCc----ccccCCCCcEEECCCCCCCccCcccccCCC
Confidence 4566666666666 3444 3556666777777777665 4444544 34556777777775 6667766666666
Q ss_pred ccEEEec
Q 043856 268 LQELSIS 274 (275)
Q Consensus 268 L~~L~l~ 274 (275)
|+.|+++
T Consensus 326 L~~L~L~ 332 (597)
T 3oja_B 326 LENLYLD 332 (597)
T ss_dssp CSEEECC
T ss_pred CCEEECC
Confidence 6666665
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.58 E-value=1.8e-14 Score=128.26 Aligned_cols=101 Identities=23% Similarity=0.299 Sum_probs=75.6
Q ss_pred CCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccc
Q 043856 161 TAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDR 240 (275)
Q Consensus 161 ~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~ 240 (275)
..+++|+.|+++++. +.... ...+..+++|+.|++++| +++.+|..+..+++|++|++++| .+..+|.
T Consensus 245 ~~l~~L~~L~Ls~n~-l~~~~-----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~---- 312 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNE-LEKIM-----YHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER---- 312 (390)
T ss_dssp GGCTTCSEEECCSSC-CCEEE-----SGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG----
T ss_pred cCCCCccEEECCCCc-CCCcC-----hhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCc----
Confidence 345556666665543 22221 112347899999999998 78889888888999999999998 5667776
Q ss_pred cCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 241 RTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 241 ~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.+..+++|++|+++ +..+| +..+++|+.|++++
T Consensus 313 ~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 313 NQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 348 (390)
T ss_dssp GHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred cccccCcCCEEECCCCccceeC--chhhccCCEEEcCC
Confidence 45678999999996 77776 77899999999874
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=3e-14 Score=120.81 Aligned_cols=170 Identities=23% Similarity=0.253 Sum_probs=114.6
Q ss_pred CCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCC
Q 043856 73 PPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDP 151 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 151 (275)
.+++|+.|.++++....++ .+..+++|++|++++| .+..++.+..++ |++|+++++. ++.++...
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~----------- 104 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGN-KLHDISALKELTNLTYLILTGNQ-LQSLPNGV----------- 104 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTSC-CCCCCTTT-----------
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCCc-cCccChhH-----------
Confidence 3567888888877655443 4677888888888884 455566777788 8888888764 55554331
Q ss_pred CCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCCC
Q 043856 152 SSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCEN 230 (275)
Q Consensus 152 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~ 230 (275)
+..+++|+.|++.++. +..++. ..+..+++|+.|++++| +++.+|.. +..+++|++|++++| .
T Consensus 105 --------~~~l~~L~~L~L~~n~-l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~ 168 (272)
T 3rfs_A 105 --------FDKLTNLKELVLVENQ-LQSLPD-----GVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-Q 168 (272)
T ss_dssp --------TTTCTTCCEEECTTSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred --------hcCCcCCCEEECCCCc-CCccCH-----HHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-C
Confidence 3467788888887754 333332 11235788888888887 67776654 467888888888877 4
Q ss_pred CccCCccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 231 LEELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 231 l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
+..++.. .+..+++|++|+++ +..+|. .++.+++|+.|++++
T Consensus 169 l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 169 LQSLPEG---VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCccCHH---HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 5555541 34667888888885 555554 467788888888753
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.58 E-value=1.7e-14 Score=126.27 Aligned_cols=185 Identities=19% Similarity=0.264 Sum_probs=109.2
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccC
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
.+..+++|++|++++|....+|. +..+++|++|++++| .+..++.+..++ |++|+++++. +..++. +.....+..
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDN-ISDISP-LANLTKMYS 136 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTSC-CCCCGG-GTTCTTCCE
T ss_pred hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCCc-ccCchh-hccCCceeE
Confidence 35667788888888877666665 778888888888874 555666677777 8888887664 444432 211111111
Q ss_pred CCCCC---CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEE
Q 043856 149 DDPSS---SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSI 225 (275)
Q Consensus 149 ~~~~~---~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 225 (275)
+.+.. ......+..+++|+.|++.++. +..++. +..+++|+.|++++| .+..++. +..+++|+.|++
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-------~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l 206 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-------IANLTDLYSLSLNYN-QIEDISP-LASLTSLHYFTA 206 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-------GGGCTTCSEEECTTS-CCCCCGG-GGGCTTCCEEEC
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-------hccCCCCCEEEccCC-ccccccc-ccCCCccceeec
Confidence 11110 0111123345555555555433 111111 124666666666666 4555554 556667777776
Q ss_pred ecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 226 YSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 226 ~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
++| .+..++. +..+++|++|+++ +..+|. +..+++|++|++++
T Consensus 207 ~~n-~l~~~~~-----~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 207 YVN-QITDITP-----VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGT 252 (347)
T ss_dssp CSS-CCCCCGG-----GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred ccC-CCCCCch-----hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCC
Confidence 665 3333322 4568888998886 677765 78889999998864
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.58 E-value=6.7e-15 Score=126.72 Aligned_cols=173 Identities=22% Similarity=0.250 Sum_probs=111.7
Q ss_pred cCCCCCCCeEEecccCCccc---ccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCcccccccc
Q 043856 71 LQPPLNVEKLWIIFYGGNIL---PKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEE 145 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~ 145 (275)
+..+++|++|+++++..... |..+..+++|++|++++| .+..+| .+..++ |++|+++++. +..++.
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~------- 118 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSN-LKQMSE------- 118 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSE-EESSTT-------
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCEEECCCCc-cccccc-------
Confidence 34555566666555544322 333445555666665553 222333 244455 6666665543 333332
Q ss_pred ccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc--CccccCCCCCccEE
Q 043856 146 ISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA--LPDYLLQTTALQEL 223 (275)
Q Consensus 146 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L 223 (275)
...+..+++|+.|+++++.-....+. .+..+++|+.|++++| .+.. +|..+..+++|++|
T Consensus 119 -----------~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 119 -----------FSVFLSLRNLIYLDISHTHTRVAFNG------IFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp -----------TTTTTTCTTCCEEECTTSCCEECSTT------TTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEE
T ss_pred -----------chhhhhccCCCEEECCCCcCCccchh------hcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEE
Confidence 11255788999999987653222221 2336899999999998 5654 78889999999999
Q ss_pred EEecCCCCccC-CccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 224 SIYSCENLEEL-PIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 224 ~l~~c~~l~~l-~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
++++|. +..+ +. .+..+++|++|+++ +..+|. .+..+++|+.|++++
T Consensus 181 ~Ls~n~-l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 181 DLSQCQ-LEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp ECTTSC-CCEECTT----TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred ECCCCC-cCCcCHH----HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence 999984 4554 44 57789999999996 666654 678899999999874
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=2e-14 Score=125.13 Aligned_cols=188 Identities=17% Similarity=0.256 Sum_probs=97.6
Q ss_pred hcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcc-ccccccc
Q 043856 70 ALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNE-FLGIEEI 146 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~-~~~~~~~ 146 (275)
.+..+++|++|++++|....+ |..+..+++|++|++++| .+..+|.- ..+ |++|+++++. +..++.. +.....+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L 147 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEK-MPKTLQELRVHENE-ITKVRKSVFNGLNQM 147 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSS-CCTTCCEEECCSSC-CCBBCHHHHTTCTTC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChh-hcccccEEECCCCc-ccccCHhHhcCCccc
Confidence 456666777777766665553 566666777777777663 34444431 114 6666665543 3333322 1111111
Q ss_pred cCCCCCCC------CCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCC
Q 043856 147 SEDDPSSS------SSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTA 219 (275)
Q Consensus 147 ~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~ 219 (275)
..+.++.. .....+..+++|+.|++.++. +..++.. .+++|+.|++++| +++.+ |..+..+++
T Consensus 148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~--------~~~~L~~L~l~~n-~l~~~~~~~~~~l~~ 217 (330)
T 1xku_A 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG--------LPPSLTELHLDGN-KITKVDAASLKGLNN 217 (330)
T ss_dssp CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS--------CCTTCSEEECTTS-CCCEECTGGGTTCTT
T ss_pred cEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcc--------ccccCCEEECCCC-cCCccCHHHhcCCCC
Confidence 11111100 111223445666666665532 2222210 2356666666666 45543 455666677
Q ss_pred ccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 220 LQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 220 L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
|++|++++|. +..++.. .+..+++|++|+++ +..+|.++..+++|++|+++
T Consensus 218 L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 218 LAKLGLSFNS-ISAVDNG---SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp CCEEECCSSC-CCEECTT---TGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred CCEEECCCCc-CceeChh---hccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence 7777776653 3333321 34556677777775 66677667777777777765
No 31
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=1.4e-14 Score=125.23 Aligned_cols=161 Identities=20% Similarity=0.280 Sum_probs=131.1
Q ss_pred CCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 74 PLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
+++|++|+++++....+| .+..+++|++|++++| .+..++.+..++ |++|+++++. ++.++ .
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~-l~~~~-~------------- 102 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP-LKNVS-A------------- 102 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCC-CSCCG-G-------------
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCc-CCCch-h-------------
Confidence 568999999999877776 5889999999999995 566676688899 9999999875 66553 2
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCc
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLE 232 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 232 (275)
+..+++|+.|+++++. +..++. +..+++|+.|++++| .++.++. +..+++|+.|++++| .+.
T Consensus 103 -------~~~l~~L~~L~l~~n~-l~~~~~-------l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~ 164 (308)
T 1h6u_A 103 -------IAGLQSIKTLDLTSTQ-ITDVTP-------LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNA-QVS 164 (308)
T ss_dssp -------GTTCTTCCEEECTTSC-CCCCGG-------GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCC
T ss_pred -------hcCCCCCCEEECCCCC-CCCchh-------hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCC-cCC
Confidence 5578999999999864 444432 337999999999998 7888876 888999999999998 555
Q ss_pred cCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 233 ELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 233 ~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.++. +..+++|+.|+++ ++.+|. +..+++|+.|++++
T Consensus 165 ~~~~-----l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 165 DLTP-----LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKN 204 (308)
T ss_dssp CCGG-----GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTT
T ss_pred CChh-----hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccC
Confidence 5543 6679999999996 777775 88999999999874
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.57 E-value=5e-15 Score=130.15 Aligned_cols=196 Identities=22% Similarity=0.274 Sum_probs=108.4
Q ss_pred hcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCc--ccccc
Q 043856 70 ALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGN--EFLGI 143 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~--~~~~~ 143 (275)
.+..+++|++|++++|....+ |..+.++++|++|++++| .+..+|. ++.++ |++|+++++. ++.++. .+...
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l 148 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHL 148 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTC
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccC
Confidence 678888999999988876664 566888899999999884 5556664 67788 8888888764 666654 21111
Q ss_pred ccccCCCCCC-----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcccc-CCC
Q 043856 144 EEISEDDPSS-----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYL-LQT 217 (275)
Q Consensus 144 ~~~~~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l 217 (275)
..+..+.++. ......+..+++|+.|+++++. +.... ...+..+++|+.|++++| +++.+|..+ ..+
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-----~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~ 221 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYE-----PKSLKSIQNVSHLILHMK-QHILLLEIFVDVT 221 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEEC-----TTTTTTCSEEEEEEEECS-CSTTHHHHHHHHT
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccC-----HHHHhccccCCeecCCCC-ccccchhhhhhhc
Confidence 1111100000 0001112334444444444332 11110 011224555555555555 344444322 235
Q ss_pred CCccEEEEecCCCCccCCcccc----------------------------ccCCCCCcccceecc---ccccchhh-cCC
Q 043856 218 TALQELSIYSCENLEELPIPED----------------------------RRTTDIPRLSSLRIG---LKVLPDYL-LRT 265 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~~~~----------------------------~~~~~l~~L~~L~l~---l~~lp~~l-~~L 265 (275)
++|++|++++|. +..++.... ..+..+++|++|+++ ++.+|..+ +.+
T Consensus 222 ~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l 300 (353)
T 2z80_A 222 SSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL 300 (353)
T ss_dssp TTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcC
Confidence 666666666653 222221100 013457788888886 77888764 788
Q ss_pred CCccEEEecC
Q 043856 266 TMLQELSISE 275 (275)
Q Consensus 266 ~~L~~L~l~~ 275 (275)
++|++|++++
T Consensus 301 ~~L~~L~L~~ 310 (353)
T 2z80_A 301 TSLQKIWLHT 310 (353)
T ss_dssp TTCCEEECCS
T ss_pred CCCCEEEeeC
Confidence 8899888864
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.57 E-value=4.5e-14 Score=123.46 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=43.3
Q ss_pred CCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---cc-ccchhhcCCCC
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LK-VLPDYLLRTTM 267 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~-~lp~~l~~L~~ 267 (275)
.+++|+.|++++| .++.++ .+..+++|++|++++| .+..++ .+..+++|++|+++ +. ..|..++.+++
T Consensus 241 ~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 241 NLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDIS-----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp TCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCG-----GGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred cCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCCh-----hhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 4555555555555 444443 3455566666666555 333332 24556777777775 33 33456777777
Q ss_pred ccEEEecC
Q 043856 268 LQELSISE 275 (275)
Q Consensus 268 L~~L~l~~ 275 (275)
|+.|++++
T Consensus 313 L~~L~L~~ 320 (347)
T 4fmz_A 313 LTTLFLSQ 320 (347)
T ss_dssp CSEEECCS
T ss_pred CCEEEccC
Confidence 77777753
No 34
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.56 E-value=7.9e-15 Score=128.90 Aligned_cols=198 Identities=17% Similarity=0.155 Sum_probs=125.2
Q ss_pred HHHHHHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCcc
Q 043856 64 DEQLLEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 64 ~~~l~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
...+|..+. ++|++|+++++....+|. .+.++++|++|++++| .+..++ .+..++ |++|+++++. ++.++..
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 118 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSS 118 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHH
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHh
Confidence 344666654 489999999998877665 7889999999999996 455443 378889 9999999875 7777655
Q ss_pred -ccccccccCCCCCCC---CC-C-CCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-Ccc
Q 043856 140 -FLGIEEISEDDPSSS---SS-S-SSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPD 212 (275)
Q Consensus 140 -~~~~~~~~~~~~~~~---~~-~-~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~ 212 (275)
+.....+..+.++.. .. . ..+..+++|+.|++.++..+..++. ..+..+++|+.|++++| .+.. .|.
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~ 192 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-----KDFAGLTFLEELEIDAS-DLQSYEPK 192 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-----TTTTTCCEEEEEEEEET-TCCEECTT
T ss_pred HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH-----HHccCCCCCCEEECCCC-CcCccCHH
Confidence 333333332222211 11 1 2355677777777776654444331 12235777777777777 4554 366
Q ss_pred ccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---cc--------------------------------c
Q 043856 213 YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LK--------------------------------V 257 (275)
Q Consensus 213 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~--------------------------------~ 257 (275)
.+..+++|++|++++|. +..++.. .+..+++|++|+++ ++ .
T Consensus 193 ~l~~l~~L~~L~l~~n~-l~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQ-HILLLEI---FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp TTTTCSEEEEEEEECSC-STTHHHH---HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred HHhccccCCeecCCCCc-cccchhh---hhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 67777777777777763 3444331 11235566666553 22 3
Q ss_pred cchhhcCCCCccEEEecC
Q 043856 258 LPDYLLRTTMLQELSISE 275 (275)
Q Consensus 258 lp~~l~~L~~L~~L~l~~ 275 (275)
+|.++..+++|+.|++++
T Consensus 269 l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSR 286 (353)
T ss_dssp HHHHHHTCTTCCEEECCS
T ss_pred hHHHHhcccCCCEEECCC
Confidence 566677888888888864
No 35
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=2e-14 Score=123.23 Aligned_cols=160 Identities=23% Similarity=0.278 Sum_probs=91.9
Q ss_pred CCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 74 PLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
+++|++|+++++....+| .+..+++|++|++++| .+..++.+..++ |++|+++++. +..++.
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-------------- 107 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENK-VKDLSS-------------- 107 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCGGG--------------
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCc-CCCChh--------------
Confidence 456777777766655554 3566777777777763 444455566666 7777777653 444331
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCc
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLE 232 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 232 (275)
+..+++|+.|+++++. +..++ ....+++|+.|++++| +++.+ ..+..+++|+.|++++| .+.
T Consensus 108 -------l~~l~~L~~L~L~~n~-i~~~~-------~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N-~l~ 169 (291)
T 1h6t_A 108 -------LKDLKKLKSLSLEHNG-ISDIN-------GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QIS 169 (291)
T ss_dssp -------GTTCTTCCEEECTTSC-CCCCG-------GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS-CCC
T ss_pred -------hccCCCCCEEECCCCc-CCCCh-------hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCC-ccc
Confidence 3356666666666542 32222 1124666666666666 45555 34556666666666665 333
Q ss_pred cCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 233 ELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 233 ~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
.++. +..+++|+.|+++ ++.+| .+..+++|+.|+++
T Consensus 170 ~~~~-----l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 170 DIVP-----LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELF 208 (291)
T ss_dssp CCGG-----GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEE
T ss_pred cchh-----hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECc
Confidence 3332 4456666666664 55555 35666666666654
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.56 E-value=4.2e-14 Score=128.12 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=51.2
Q ss_pred CCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCccC-CccccccCCCCCcccceecc---ccccch-hhcCC
Q 043856 192 IMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEEL-PIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRT 265 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L 265 (275)
.+++|+.|++++| +++.+ |..+..+++|++|++++|. +..+ |. .+..+++|++|+++ ++.+|. .+..+
T Consensus 321 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 321 GLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQ----SFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp TCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSC-CCEECTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCc-ccccChh----hccccccccEEECCCCccccCCHhHhccC
Confidence 4666777777666 45554 4456667777777777663 3333 33 56677888888885 666665 45778
Q ss_pred CCccEEEecC
Q 043856 266 TMLQELSISE 275 (275)
Q Consensus 266 ~~L~~L~l~~ 275 (275)
++|++|++++
T Consensus 395 ~~L~~L~l~~ 404 (455)
T 3v47_A 395 TSLQKIWLHT 404 (455)
T ss_dssp TTCCEEECCS
T ss_pred CcccEEEccC
Confidence 8888888763
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.55 E-value=2.1e-14 Score=134.77 Aligned_cols=196 Identities=20% Similarity=0.146 Sum_probs=140.0
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCc--CC-CCCCcc-cceeeccccccccccCccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEH--LP-PLGKLP-LEKLELRDLKSVKRVGNEF 140 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~--lp-~l~~L~-L~~L~l~~~~~l~~l~~~~ 140 (275)
..+| .+ .+++|++|++++|.... +..+..+++|++|++++|..... +| .+..++ |++|++++|. +..+|..+
T Consensus 320 ~~lp-~~-~l~~L~~L~l~~n~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~ 395 (606)
T 3vq2_A 320 KQFP-TL-DLPFLKSLTLTMNKGSI-SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANF 395 (606)
T ss_dssp SSCC-CC-CCSSCCEEEEESCSSCE-ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCC
T ss_pred cccc-cC-CCCccceeeccCCcCcc-chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhc
Confidence 3455 45 88999999999986553 33567999999999999643222 13 356788 9999999876 77777555
Q ss_pred cccccccCCCCCC-----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc--Cccc
Q 043856 141 LGIEEISEDDPSS-----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA--LPDY 213 (275)
Q Consensus 141 ~~~~~~~~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~ 213 (275)
.....+..+.++. ......+..+++|+.|+++++.-....+. .+..+++|+.|++++| .+.. +|..
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n-~l~~~~~~~~ 468 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG------IFLGLTSLNTLKMAGN-SFKDNTLSNV 468 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT------TTTTCTTCCEEECTTC-EEGGGEECSC
T ss_pred cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh------hhcCCCCCCEEECCCC-cCCCcchHHh
Confidence 5444443333331 11113566788889998887763332322 2337899999999998 4654 6888
Q ss_pred cCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---cccc-chhhcCCCCccEEEecC
Q 043856 214 LLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVL-PDYLLRTTMLQELSISE 275 (275)
Q Consensus 214 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~l-p~~l~~L~~L~~L~l~~ 275 (275)
+..+++|++|++++|......|. .+..+++|++|+++ +..+ |..++++++|+.|++++
T Consensus 469 ~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQLEQISWG----VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp CTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred hccCCCCCEEECCCCcCCccChh----hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC
Confidence 89999999999999854333344 57789999999996 5554 78899999999999874
No 38
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.55 E-value=3.4e-14 Score=118.07 Aligned_cols=169 Identities=15% Similarity=0.210 Sum_probs=132.1
Q ss_pred CCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccccccccccCCC
Q 043856 75 LNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDD 150 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 150 (275)
++|++|+++++....+|. .+..+++|++|++++|..++.++. +..++ |++|++++|+.++.++...
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~---------- 100 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA---------- 100 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS----------
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH----------
Confidence 489999999998877665 788999999999999765777763 67888 9999999866688877532
Q ss_pred CCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCccc---EEeEccCcccCcCccc-cCCCCCcc-EEEE
Q 043856 151 PSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLS---SLKVGSCNKLKALPDY-LLQTTALQ-ELSI 225 (275)
Q Consensus 151 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~---~L~l~~c~~l~~lp~~-l~~l~~L~-~L~l 225 (275)
+..+++|+.|++.++. +..++. +..+++|+ .|++++|++++.+|.. +..+++|+ +|++
T Consensus 101 ---------f~~l~~L~~L~l~~n~-l~~lp~-------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 101 ---------LKELPLLKFLGIFNTG-LKMFPD-------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp ---------EECCTTCCEEEEEEEC-CCSCCC-------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred ---------hCCCCCCCEEeCCCCC-Cccccc-------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 3478999999998764 444442 22566776 9999998778888754 78899999 9999
Q ss_pred ecCCCCccCCccccccCCCCCcccceecc----ccccc-hhhcCC-CCccEEEecC
Q 043856 226 YSCENLEELPIPEDRRTTDIPRLSSLRIG----LKVLP-DYLLRT-TMLQELSISE 275 (275)
Q Consensus 226 ~~c~~l~~l~~~~~~~~~~l~~L~~L~l~----l~~lp-~~l~~L-~~L~~L~l~~ 275 (275)
++| .+..+|. .....++|++|+++ ++.+| ..+..+ ++|+.|++++
T Consensus 164 ~~n-~l~~i~~----~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 164 YNN-GFTSVQG----YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp CSC-CCCEECT----TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred CCC-CCcccCH----hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 987 5667776 33334899999995 66775 467888 9999999874
No 39
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=1.5e-14 Score=125.08 Aligned_cols=189 Identities=18% Similarity=0.168 Sum_probs=115.1
Q ss_pred CCCCCCeEEecccCCcc-ccccc--CCCCCCcEEeeecCCCCCcCCC-CCCc-----c-cceeeccccccccccC-cccc
Q 043856 73 PPLNVEKLWIIFYGGNI-LPKWL--TSLTNLRDLKLVFCENCEHLPP-LGKL-----P-LEKLELRDLKSVKRVG-NEFL 141 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~-lp~~l--~~l~~L~~L~L~~c~~~~~lp~-l~~L-----~-L~~L~l~~~~~l~~l~-~~~~ 141 (275)
.+++|++|++++|.... +|..+ ..+++|++|++++|. +..+|. ++.+ + |++|+++++. +..++ ..+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhc
Confidence 57788888888887664 67765 788888888888853 443343 3334 6 8888888665 55554 3332
Q ss_pred ccccccCCCCCCCCC------CCC--CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc--
Q 043856 142 GIEEISEDDPSSSSS------SSS--VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP-- 211 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~------~~~--l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-- 211 (275)
....+..+.++.... ... ...+++|+.|+++++. +..++. + .......+++|+.|++++| +++..+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 246 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSG-V-CSALAAARVQLQGLDLSHN-SLRDAAGA 246 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHH-H-HHHHHHTTCCCSEEECTTS-CCCSSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHH-H-HHHHHhcCCCCCEEECCCC-cCCcccch
Confidence 222222222221110 001 1456777777776653 221111 0 0001114678888888887 566643
Q ss_pred cccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 212 DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 212 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
..+..+++|++|++++| .++.+|. .+. ++|++|+++ ++.+|. +..+++|++|++++
T Consensus 247 ~~~~~l~~L~~L~Ls~N-~l~~ip~----~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFT-GLKQVPK----GLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp SCCCCCTTCCEEECTTS-CCSSCCS----SCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTT
T ss_pred hhhhhcCCCCEEECCCC-ccChhhh----hcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccC
Confidence 34556788888888887 4567766 333 788888886 777776 88889999988864
No 40
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=3.4e-14 Score=114.76 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=102.1
Q ss_pred CCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccc-cCccccccccccCCC
Q 043856 73 PPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKR-VGNEFLGIEEISEDD 150 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~-l~~~~~~~~~~~~~~ 150 (275)
.+++|++|+++++....+| .+..+++|++|++++| .+..++.+..++ |++|+++++. +.. .+..
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~----------- 107 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPN----------- 107 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCC-----------
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChh-----------
Confidence 3568899999888777677 6788899999999986 666777778888 8889888765 443 3322
Q ss_pred CCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCC
Q 043856 151 PSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCEN 230 (275)
Q Consensus 151 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~ 230 (275)
+..+++|+.|+++++.-....+. .+..+++|+.|++++|..++.+| .+..+++|++|++++|.
T Consensus 108 ---------l~~l~~L~~L~Ls~n~i~~~~~~------~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~- 170 (197)
T 4ezg_A 108 ---------LSGLTSLTLLDISHSAHDDSILT------KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG- 170 (197)
T ss_dssp ---------CTTCTTCCEEECCSSBCBGGGHH------HHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-
T ss_pred ---------hcCCCCCCEEEecCCccCcHhHH------HHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-
Confidence 44678888888887643222222 12267888888888885477776 57778888888888773
Q ss_pred CccCCccccccCCCCCcccceecc
Q 043856 231 LEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 231 l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
+..++ .+..+++|++|+++
T Consensus 171 i~~~~-----~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 171 VHDYR-----GIEDFPKLNQLYAF 189 (197)
T ss_dssp CCCCT-----TGGGCSSCCEEEEC
T ss_pred CcChH-----HhccCCCCCEEEee
Confidence 44443 24456777777664
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.54 E-value=7.8e-14 Score=127.27 Aligned_cols=202 Identities=18% Similarity=0.157 Sum_probs=107.7
Q ss_pred HHHH-hcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCcc-c
Q 043856 66 QLLE-ALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNE-F 140 (275)
Q Consensus 66 ~l~~-~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~-~ 140 (275)
.++. .+..+++|++|++++|.... .|..+..+++|++|++++|......+ .+..++ |+.|+++++. +..++.. +
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l 172 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEAL 172 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHH
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHh
Confidence 3443 36778888888888887766 46667788888888888853322222 366777 8888888664 5555432 1
Q ss_pred cccccccCCCCC----CCCCCCCCCCCCcccEeecccccccccccccccc------------------ccccCCCCcccE
Q 043856 141 LGIEEISEDDPS----SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITR------------------KENISIMPRLSS 198 (275)
Q Consensus 141 ~~~~~~~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~------------------~~~~~~l~~L~~ 198 (275)
.....+..+.+. .......+..+++|+.|++.++..+..++..... ...+..+++|+.
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 252 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCE
T ss_pred cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCe
Confidence 111111111111 0011123456677777777766554443321100 001123445555
Q ss_pred EeEccCcccCcCc-cccCCCCCccEEEEecCCCCccC-CccccccCCCCCcccceecc---ccccch-hhcCCCCccEEE
Q 043856 199 LKVGSCNKLKALP-DYLLQTTALQELSIYSCENLEEL-PIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELS 272 (275)
Q Consensus 199 L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~ 272 (275)
|++++| .++.++ ..+..+++|++|++++|. +..+ +. .+..+++|++|+++ ++.+|. .+..+++|+.|+
T Consensus 253 L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 253 LNLSYN-PISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPY----AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp EECCSS-CCCEECTTSCTTCTTCCEEECCSSC-CSEECTT----TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred eECCCC-cCCccChhhccccccCCEEECCCCc-cceECHH----HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence 555554 244332 234445555555555542 2222 22 45566777777775 555554 346667777777
Q ss_pred ec
Q 043856 273 IS 274 (275)
Q Consensus 273 l~ 274 (275)
++
T Consensus 327 l~ 328 (477)
T 2id5_A 327 LD 328 (477)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 42
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.54 E-value=4.8e-14 Score=127.68 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=52.2
Q ss_pred CCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---cccc-chhhcCCC
Q 043856 192 IMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVL-PDYLLRTT 266 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~l-p~~l~~L~ 266 (275)
.+++|+.|++++| ++..+ |..+..+++|++|++++| .+..++.. .+..+++|++|+++ +..+ |.+++.++
T Consensus 297 ~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 297 HFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSR---MFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGG---GGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred cCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCC-ccCCcChh---HhcCcccCCEEECCCCcccccChhhccccc
Confidence 5667777777776 45553 446667777777777776 33444321 45667888888885 5544 56777888
Q ss_pred CccEEEecC
Q 043856 267 MLQELSISE 275 (275)
Q Consensus 267 ~L~~L~l~~ 275 (275)
+|++|++++
T Consensus 372 ~L~~L~L~~ 380 (455)
T 3v47_A 372 NLKELALDT 380 (455)
T ss_dssp TCCEEECCS
T ss_pred cccEEECCC
Confidence 888888763
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.53 E-value=6.5e-14 Score=131.40 Aligned_cols=38 Identities=21% Similarity=0.134 Sum_probs=21.9
Q ss_pred cCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecC
Q 043856 71 LQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFC 108 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c 108 (275)
+..+++|++|++++|....+|.++..+++|++|++++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n 311 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN 311 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccC
Confidence 45555666666665555555555555556666665554
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.53 E-value=8.4e-14 Score=121.28 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=48.5
Q ss_pred HHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGN 138 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~ 138 (275)
+..+..+++|++|++++|.... .|..++.+++|++|++++| .+..+|.-. .+ |++|+++++. +..++.
T Consensus 71 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~-~~~L~~L~l~~n~-i~~~~~ 140 (332)
T 2ft3_A 71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNL-PSSLVELRIHDNR-IRKVPK 140 (332)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSC-CTTCCEEECCSSC-CCCCCS
T ss_pred HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCccc-cccCCEEECCCCc-cCccCH
Confidence 4567888899999998887766 4777888999999999884 455565421 15 7777777654 555544
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=7.2e-14 Score=131.30 Aligned_cols=196 Identities=19% Similarity=0.177 Sum_probs=117.6
Q ss_pred cCCCCCCCeEEecccCCcccc-cccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccc-ccccc
Q 043856 71 LQPPLNVEKLWIIFYGGNILP-KWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEF-LGIEE 145 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~-~~~~~ 145 (275)
+..+++|++|++++|....+| ..++.+++|++|++++|. +..+|+ ++.++ |++|+++++. +..+|... .....
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~ 148 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPK 148 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCC
Confidence 455678888888877766643 467788888888888754 444442 56777 8888888764 66666543 23333
Q ss_pred ccCCCCCC----CCCCCCCCCCCcccEeeccccccccccccc----c-----c--cccc---------------------
Q 043856 146 ISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLEEWNYR----I-----T--RKEN--------------------- 189 (275)
Q Consensus 146 ~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~----i-----~--~~~~--------------------- 189 (275)
+..+.++. ......+..+++|+.|+++++. +..++.. + . ....
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~ 227 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVR 227 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEE
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccc
Confidence 33222221 1122346678889999887653 2221110 0 0 0000
Q ss_pred cCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCC
Q 043856 190 ISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTT 266 (275)
Q Consensus 190 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~ 266 (275)
...+++|+.|++++| .++.. ..+..+++|+.|++++|..-...|. .+..+++|++|+++ +..+|..++.++
T Consensus 228 ~~~~~~L~~L~L~~n-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 301 (597)
T 3oja_B 228 GPVNVELTILKLQHN-NLTDT-AWLLNYPGLVEVDLSYNELEKIMYH----PFVKMQRLERLYISNNRLVALNLYGQPIP 301 (597)
T ss_dssp CSCCSCCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSCCCEEESG----GGTTCSSCCEEECTTSCCCEEECSSSCCT
T ss_pred cccCCCCCEEECCCC-CCCCC-hhhccCCCCCEEECCCCccCCCCHH----HhcCccCCCEEECCCCCCCCCCcccccCC
Confidence 001234555555555 34443 3466778888888887743333344 56678888888886 777787777888
Q ss_pred CccEEEecC
Q 043856 267 MLQELSISE 275 (275)
Q Consensus 267 ~L~~L~l~~ 275 (275)
+|+.|++++
T Consensus 302 ~L~~L~Ls~ 310 (597)
T 3oja_B 302 TLKVLDLSH 310 (597)
T ss_dssp TCCEEECCS
T ss_pred CCcEEECCC
Confidence 888888864
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.53 E-value=2.1e-13 Score=124.13 Aligned_cols=178 Identities=17% Similarity=0.139 Sum_probs=97.0
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccC
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
++..+++|++|++++|....+| ++.+++|++|++++| .+..++ ++.++ |++|+++++. ++.++ +.....+..
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~-~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD-VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTY 131 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC-CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCE
T ss_pred hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee-cCCCCcCCEEECCCCc-CCeec--CCCCCcCCE
Confidence 5667778888888877766665 677788888888874 344454 66777 7888877664 55554 222111111
Q ss_pred CCCCCC-CCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEec
Q 043856 149 DDPSSS-SSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYS 227 (275)
Q Consensus 149 ~~~~~~-~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 227 (275)
+.++.. .....+..+++|+.|++.++..+..+. +..+++|+.|++++| +++.+| +..+++|+.|++++
T Consensus 132 L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~--------~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 132 LNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD--------VTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDT 200 (457)
T ss_dssp EECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCC--------CTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCS
T ss_pred EECCCCccceeccccCCcCCEEECCCCCcccccc--------cccCCcCCEEECCCC-ccceec--cccCCCCCEEECcC
Confidence 111100 000124456667777666654443332 114566666666665 455555 45556666666655
Q ss_pred CCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 228 CENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 228 c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
| .+..++ +..+++|++|+++ ++.+| ++.+++|+.|+++
T Consensus 201 N-~l~~~~------l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 201 N-NITKLD------LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCS 241 (457)
T ss_dssp S-CCSCCC------CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECC
T ss_pred C-cCCeec------cccCCCCCEEECcCCcccccC--ccccCCCCEEEee
Confidence 4 233221 3345555555554 44444 4455555555543
No 47
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=2e-14 Score=132.02 Aligned_cols=190 Identities=15% Similarity=0.072 Sum_probs=117.5
Q ss_pred CCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccc---------
Q 043856 72 QPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEF--------- 140 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~--------- 140 (275)
..+++|++|++++|....+ |..++.+++|++|+|++|. +...++++.++ |++|++++|. +..++...
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~~~L~~L~L~~ 108 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLVGPSIETLHAAN 108 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEECTTCCEEECCS
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCCCCCcCEEECcC
Confidence 3445899999999887764 5688899999999999854 44344477888 8888888764 55444210
Q ss_pred cc--------cccccCCCCCC----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccC
Q 043856 141 LG--------IEEISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLK 208 (275)
Q Consensus 141 ~~--------~~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~ 208 (275)
.. ...+..+.++. ......+..+++|+.|+++++. +..... ......+++|+.|++++| .++
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~----~~l~~~l~~L~~L~Ls~N-~l~ 182 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNF----AELAASSDTLEHLNLQYN-FIY 182 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEG----GGGGGGTTTCCEEECTTS-CCC
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcCh----HHHhhhCCcccEEecCCC-ccc
Confidence 00 00000000110 0011123445556666665542 221111 001114677888888777 576
Q ss_pred cCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 209 ALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 209 ~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.+|. ...+++|+.|++++| .+..+|. .+..+++|+.|+++ +..+|..++.+++|+.|++++
T Consensus 183 ~~~~-~~~l~~L~~L~Ls~N-~l~~~~~----~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 183 DVKG-QVVFAKLKTLDLSSN-KLAFMGP----EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp EEEC-CCCCTTCCEEECCSS-CCCEECG----GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred cccc-cccCCCCCEEECCCC-CCCCCCH----hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCC
Confidence 6654 335788888888876 4666666 46678888888886 777888888888888888864
No 48
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.52 E-value=9.9e-14 Score=130.16 Aligned_cols=181 Identities=17% Similarity=0.112 Sum_probs=100.6
Q ss_pred HHHHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFL 141 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~ 141 (275)
.+|..+..+++|++|++++|.... .|..+..+++|++|++++|.....+|. ++.++ |++|+++++. +..++..
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-- 368 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCC-- 368 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEES--
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCc--
Confidence 345555555556666665555444 244555555566666555443333332 44555 5555555543 2222100
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-Cc-cccCCCCC
Q 043856 142 GIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LP-DYLLQTTA 219 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp-~~l~~l~~ 219 (275)
...+..+++|+.|+++++.- ..+. ...+..+++|+.|++++| ++.. .| ..+..+++
T Consensus 369 ---------------~~~~~~l~~L~~L~l~~n~l-~~~~-----~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 369 ---------------NLQLRNLSHLQSLNLSYNEP-LSLK-----TEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHL 426 (606)
T ss_dssp ---------------TTTTTTCTTCCEEECCSCSC-EEEC-----TTTTTTCTTCSEEECTTC-CEECCTTCCTTTTCTT
T ss_pred ---------------chhcccCCCCCEEECCCCcC-CcCC-----HHHhcCCccCCeEECCCC-cCCCcccchhhhCccc
Confidence 00144566677776665532 2221 112235777888888777 4443 23 23677888
Q ss_pred ccEEEEecCCCCccCCccccccCCCCCcccceecc---ccc--c--chhhcCCCCccEEEecC
Q 043856 220 LQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKV--L--PDYLLRTTMLQELSISE 275 (275)
Q Consensus 220 L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~--l--p~~l~~L~~L~~L~l~~ 275 (275)
|++|++++|......+. .+..+++|++|+++ +.. + +..++.+++|++|++++
T Consensus 427 L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQ----LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp CCEEECTTCCCBTTCTT----TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred CCEEECCCCccCCcCHH----HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 88888887753333333 56678888888886 332 2 24678888888888864
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.51 E-value=3.8e-14 Score=122.83 Aligned_cols=190 Identities=15% Similarity=0.070 Sum_probs=114.6
Q ss_pred CCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccc---------
Q 043856 72 QPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEF--------- 140 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~--------- 140 (275)
..+++|++|++++|....+ |..+..+++|++|++++|. +..++++..++ |++|+++++. ++.++...
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~L~~L~l~~ 108 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLVGPSIETLHAAN 108 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSE-EEEEEECTTCCEEECCS
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCc-cccccCCCCcCEEECCC
Confidence 4566788888887776654 3567778888888887743 33333466667 7777777653 44333110
Q ss_pred c--------ccccccCCCCCC----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccC
Q 043856 141 L--------GIEEISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLK 208 (275)
Q Consensus 141 ~--------~~~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~ 208 (275)
. ....+..+.++. ......+..+++|+.|+++++. +..... ......+++|+.|++++| .++
T Consensus 109 n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~----~~~~~~l~~L~~L~L~~N-~l~ 182 (317)
T 3o53_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNF----AELAASSDTLEHLNLQYN-FIY 182 (317)
T ss_dssp SCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEG----GGGGGGTTTCCEEECTTS-CCC
T ss_pred CccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccH----HHHhhccCcCCEEECCCC-cCc
Confidence 0 000000000110 0011123445667777776543 222221 001114678888888887 577
Q ss_pred cCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 209 ALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 209 ~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.+|. ...+++|++|++++| .+..++. .+..+++|++|+++ ++.+|..+..+++|+.|++++
T Consensus 183 ~~~~-~~~l~~L~~L~Ls~N-~l~~l~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 183 DVKG-QVVFAKLKTLDLSSN-KLAFMGP----EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp EEEC-CCCCTTCCEEECCSS-CCCEECG----GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred cccc-ccccccCCEEECCCC-cCCcchh----hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC
Confidence 7754 334888888888887 5666666 46678889999986 778888888889999998864
No 50
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.51 E-value=1.6e-13 Score=117.54 Aligned_cols=168 Identities=23% Similarity=0.217 Sum_probs=132.1
Q ss_pred cCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCcccccccccc
Q 043856 71 LQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEIS 147 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~ 147 (275)
+..+++++.++++++....+|..+. +++++|++++|. +..++ .+..++ |++|+++++. ++.++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~--------- 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQV--------- 72 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEEC---------
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccC---------
Confidence 4567899999999988777887664 789999999954 44443 377888 9999999875 666543
Q ss_pred CCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc-cccCCCCCccEEEEe
Q 043856 148 EDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP-DYLLQTTALQELSIY 226 (275)
Q Consensus 148 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~ 226 (275)
...+++|+.|+++++ .+..++. ....+++|+.|+++++ +++.+| ..+..+++|++|+++
T Consensus 73 ------------~~~l~~L~~L~Ls~N-~l~~l~~------~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 73 ------------DGTLPVLGTLDLSHN-QLQSLPL------LGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132 (290)
T ss_dssp ------------CSCCTTCCEEECCSS-CCSSCCC------CTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECT
T ss_pred ------------CCCCCcCCEEECCCC-cCCcCch------hhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECC
Confidence 236899999999975 3555553 2237899999999998 788887 458889999999999
Q ss_pred cCCCCccCCccccccCCCCCcccceecc---ccccchh-hcCCCCccEEEecC
Q 043856 227 SCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDY-LLRTTMLQELSISE 275 (275)
Q Consensus 227 ~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~-l~~L~~L~~L~l~~ 275 (275)
+| .+..++.. .+..+++|+.|+++ ++.+|.. +..+++|+.|++++
T Consensus 133 ~N-~l~~~~~~---~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 133 GN-ELKTLPPG---LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp TS-CCCCCCTT---TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CC-CCCccChh---hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 87 56666652 45679999999996 8888865 57899999999864
No 51
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.51 E-value=8.3e-14 Score=130.92 Aligned_cols=145 Identities=23% Similarity=0.263 Sum_probs=77.9
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccC
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
.+..+++|+.|++++|....+|. +..+++|+.|+|++| .+..+|.+..++ |+.|+|++|. +..++ .
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~l~-~--------- 126 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLSLEHNG-ISDIN-G--------- 126 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCTTSTTCTTCCEEECTTSC-CCCCG-G---------
T ss_pred HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCChhhccCCCCCEEEecCCC-CCCCc-c---------
Confidence 34555566666666655544443 556666666666653 344455555555 6666666543 33322 1
Q ss_pred CCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecC
Q 043856 149 DDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 149 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 228 (275)
+..+++|+.|+++++. +..+. .+..+++|+.|++++| .+..++. +..+++|+.|+|++|
T Consensus 127 -----------l~~l~~L~~L~Ls~N~-l~~l~-------~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 127 -----------LVHLPQLESLYLGNNK-ITDIT-------VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN 185 (605)
T ss_dssp -----------GGGCTTCSEEECCSSC-CCCCG-------GGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred -----------ccCCCccCEEECCCCc-cCCch-------hhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCC
Confidence 3356666666666542 22221 1124666666666666 4555544 556666666666665
Q ss_pred CCCccCCccccccCCCCCcccceecc
Q 043856 229 ENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 229 ~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.+..++ .+..+++|+.|+++
T Consensus 186 -~i~~l~-----~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 186 -HISDLR-----ALAGLKNLDVLELF 205 (605)
T ss_dssp -CCCBCG-----GGTTCTTCSEEECC
T ss_pred -CCCCCh-----HHccCCCCCEEEcc
Confidence 333332 24556666666664
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.51 E-value=1.8e-13 Score=119.08 Aligned_cols=194 Identities=17% Similarity=0.229 Sum_probs=131.6
Q ss_pred HHHHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~ 142 (275)
.+|..+. ++|++|+++++....+|. .+..+++|++|++++|......| .++.++ |++|+++++. ++.+|..+.
T Consensus 45 ~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~- 120 (330)
T 1xku_A 45 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP- 120 (330)
T ss_dssp SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC-
T ss_pred ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc-
Confidence 3555443 689999999998777654 78899999999999965443334 478899 9999999775 777776543
Q ss_pred cccccCCCCCCCC----CCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCC
Q 043856 143 IEEISEDDPSSSS----SSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTT 218 (275)
Q Consensus 143 ~~~~~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 218 (275)
..+..+.++... ....+..+++|+.|++.++.- ..... ....+..+++|+.|++++| .++.+|..+. +
T Consensus 121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~---~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~--~ 192 (330)
T 1xku_A 121 -KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-KSSGI---ENGAFQGMKKLSYIRIADT-NITTIPQGLP--P 192 (330)
T ss_dssp -TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC-CGGGB---CTTGGGGCTTCCEEECCSS-CCCSCCSSCC--T
T ss_pred -ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC-CccCc---ChhhccCCCCcCEEECCCC-ccccCCcccc--c
Confidence 112222111111 111245677888888876542 11100 0112336889999999888 6888887654 8
Q ss_pred CccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccc-hhhcCCCCccEEEecC
Q 043856 219 ALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLP-DYLLRTTMLQELSISE 275 (275)
Q Consensus 219 ~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp-~~l~~L~~L~~L~l~~ 275 (275)
+|++|++++|. +..++.. .+..+++|++|+++ ++.++ ..+..+++|++|++++
T Consensus 193 ~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 193 SLTELHLDGNK-ITKVDAA---SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp TCSEEECTTSC-CCEECTG---GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred cCCEEECCCCc-CCccCHH---HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 99999998874 4444321 56789999999996 66665 4788899999999874
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.50 E-value=1.4e-13 Score=125.33 Aligned_cols=179 Identities=19% Similarity=0.136 Sum_probs=107.0
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccC
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
.++.+++|++|+++++....+| .++.+++|++|++++| .+..+| ++.++ |++|+++++. ++.++ +.....+..
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCC-Cceee--cCCCCcCCE
Confidence 3445789999999999877777 6889999999999995 466666 88899 9999999875 66654 222111111
Q ss_pred CCCCCCC-CCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEec
Q 043856 149 DDPSSSS-SSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYS 227 (275)
Q Consensus 149 ~~~~~~~-~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 227 (275)
+.++... ..-.+..+++|+.|+++++. +..++ ...+++|+.|++++|..+..+ .+..+++|++|++++
T Consensus 111 L~L~~N~l~~l~~~~l~~L~~L~l~~N~-l~~l~--------l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 111 LNCDTNKLTKLDVSQNPLLTYLNCARNT-LTEID--------VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp EECCSSCCSCCCCTTCTTCCEEECTTSC-CSCCC--------CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred EECCCCcCCeecCCCCCcCCEEECCCCc-cceec--------cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 1111000 00013444555555554432 22211 114556666666665545544 245566666666665
Q ss_pred CCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 228 CENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 228 c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
| .++.+| +..+++|+.|+++ ++.++ ++.+++|+.|+++
T Consensus 180 n-~l~~l~------l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls 220 (457)
T 3bz5_A 180 N-KITELD------VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCS 220 (457)
T ss_dssp S-CCCCCC------CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECC
T ss_pred C-ccceec------cccCCCCCEEECcCCcCCeec--cccCCCCCEEECc
Confidence 5 344433 3456677777775 55553 6677777777775
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.50 E-value=5.6e-14 Score=129.00 Aligned_cols=189 Identities=15% Similarity=0.090 Sum_probs=132.0
Q ss_pred HHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC------------------CCCcc-cceeecc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP------------------LGKLP-LEKLELR 128 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~------------------l~~L~-L~~L~l~ 128 (275)
|..+..+++|++|++++|.....++ ++.+++|++|++++|. +..+|. ...++ |+.|+++
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~ 128 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128 (487)
T ss_dssp GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECC
T ss_pred HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECC
Confidence 5678889999999999988765444 7888999999888863 322221 12345 7777887
Q ss_pred cccccccc-CccccccccccCCCCCCCC----CCCCCC-CCCcccEeeccccccccccccccccccccCCCCcccEEeEc
Q 043856 129 DLKSVKRV-GNEFLGIEEISEDDPSSSS----SSSSVT-AFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVG 202 (275)
Q Consensus 129 ~~~~l~~l-~~~~~~~~~~~~~~~~~~~----~~~~l~-~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~ 202 (275)
++. +..+ |..+.....+..+.++... ....+. .+++|+.|+++++. +..++. ...+++|+.|+++
T Consensus 129 ~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-------~~~l~~L~~L~Ls 199 (487)
T 3oja_A 129 NNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-------QVVFAKLKTLDLS 199 (487)
T ss_dssp SSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-------CCCCTTCCEEECC
T ss_pred CCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc-------cccCCCCCEEECC
Confidence 665 4444 3333333333333333211 122233 68999999999865 444432 1258999999999
Q ss_pred cCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---c--cccchhhcCCCCccEEEe
Q 043856 203 SCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---L--KVLPDYLLRTTMLQELSI 273 (275)
Q Consensus 203 ~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l--~~lp~~l~~L~~L~~L~l 273 (275)
+| +++.+|..+..+++|+.|++++| .+..+|. .+..+++|+.|+++ + ..+|.++..+++|+.+++
T Consensus 200 ~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~----~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 200 SN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEK----ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp SS-CCCEECGGGGGGTTCSEEECTTS-CCCEECT----TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CC-CCCCCCHhHcCCCCccEEEecCC-cCcccch----hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 98 79999888999999999999997 5667887 57789999999996 3 377888888887776554
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.50 E-value=3.2e-13 Score=117.63 Aligned_cols=200 Identities=15% Similarity=0.154 Sum_probs=132.7
Q ss_pred HHHHHhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcC-C-CCCCcc-cceeeccccccccccCccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHL-P-PLGKLP-LEKLELRDLKSVKRVGNEF 140 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~l-p-~l~~L~-L~~L~l~~~~~l~~l~~~~ 140 (275)
..+|..+ .++|++|+++++....+ |..+.++++|++|++++|. +..+ | .++.++ |++|+++++. +..+|..+
T Consensus 46 ~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~ 121 (332)
T 2ft3_A 46 KAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNL 121 (332)
T ss_dssp SSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSC-CCSCCSSC
T ss_pred cccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCc-CCccCccc
Confidence 3456555 36899999999987775 5578899999999999964 4444 3 478889 9999999775 77777654
Q ss_pred cccccccCCCCCC----CCCCCCCCCCCcccEeecccccccc--ccccccc----------ccc----ccCCCCcccEEe
Q 043856 141 LGIEEISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLE--EWNYRIT----------RKE----NISIMPRLSSLK 200 (275)
Q Consensus 141 ~~~~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~--~l~~~i~----------~~~----~~~~l~~L~~L~ 200 (275)
. ..+..+.++. ......+..+++|+.|++.++.--. ..+..+. ... ....+++|+.|+
T Consensus 122 ~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~ 199 (332)
T 2ft3_A 122 P--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH 199 (332)
T ss_dssp C--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCB
T ss_pred c--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEE
Confidence 3 2222222221 1122235678888888887653210 1110000 000 000235777888
Q ss_pred EccCcccCcCc-cccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 201 VGSCNKLKALP-DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 201 l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
+++| +++.++ ..+..+++|++|++++| .+..++.. .+..+++|++|+++ ++.+|.++..+++|+.|++++
T Consensus 200 l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 200 LDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIENG---SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp CCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTT---GGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCS
T ss_pred CCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCChh---HhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCC
Confidence 8777 566654 56778889999998887 44444431 46678999999996 889999999999999999874
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.50 E-value=1.7e-13 Score=124.89 Aligned_cols=189 Identities=19% Similarity=0.316 Sum_probs=87.9
Q ss_pred cCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCC
Q 043856 71 LQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISED 149 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 149 (275)
+..+++|++|++++|....++. ++++++|++|++++| .+..++.+..++ |++|++++|. +..++. +.....+..+
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L 161 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQL 161 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEE-ECCCGG-GTTCTTCSEE
T ss_pred hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChHHcCCCCCCEEECCCCc-cCCChh-hccCCcccEe
Confidence 4555556666665555444443 556666666666653 344444455566 6666666543 333321 1111110000
Q ss_pred CCC-CCCCCCCCCCCCcccEeeccccccccccccccc----------------cccccCCCCcccEEeEccCcccCcCcc
Q 043856 150 DPS-SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRIT----------------RKENISIMPRLSSLKVGSCNKLKALPD 212 (275)
Q Consensus 150 ~~~-~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~----------------~~~~~~~l~~L~~L~l~~c~~l~~lp~ 212 (275)
.+. .......+..+++|+.|+++++. +..+.. +. .......+++|+.|++++| .++.++
T Consensus 162 ~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~- 237 (466)
T 1o6v_A 162 SFGNQVTDLKPLANLTTLERLDISSNK-VSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN-QLKDIG- 237 (466)
T ss_dssp EEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCG-
T ss_pred ecCCcccCchhhccCCCCCEEECcCCc-CCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCC-Ccccch-
Confidence 000 00011123445555555555432 111110 00 0000113455555555554 344443
Q ss_pred ccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 213 YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 213 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
.+..+++|++|++++|. +..++. +..+++|++|+++ +..+|. +..+++|+.|+++
T Consensus 238 ~l~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQ-ISNLAP-----LSGLTKLTELKLGANQISNISP-LAGLTALTNLELN 295 (466)
T ss_dssp GGGGCTTCSEEECCSSC-CCCCGG-----GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECC
T ss_pred hhhcCCCCCEEECCCCc-cccchh-----hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcC
Confidence 34455566666665552 222221 4456777777775 555554 6677777777775
No 57
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=8.5e-14 Score=112.35 Aligned_cols=145 Identities=14% Similarity=0.186 Sum_probs=114.9
Q ss_pred CCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccc
Q 043856 95 TSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKE 173 (275)
Q Consensus 95 ~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 173 (275)
..+++|++|++++ +.+..+|.+..++ |++|++++| .+..++ . +..+++|+.|++++
T Consensus 41 ~~l~~L~~L~l~~-n~i~~l~~l~~l~~L~~L~l~~n-~~~~~~-~--------------------l~~l~~L~~L~l~~ 97 (197)
T 4ezg_A 41 AQMNSLTYITLAN-INVTDLTGIEYAHNIKDLTINNI-HATNYN-P--------------------ISGLSNLERLRIMG 97 (197)
T ss_dssp HHHHTCCEEEEES-SCCSCCTTGGGCTTCSEEEEESC-CCSCCG-G--------------------GTTCTTCCEEEEEC
T ss_pred hhcCCccEEeccC-CCccChHHHhcCCCCCEEEccCC-CCCcch-h--------------------hhcCCCCCEEEeEC
Confidence 4778999999999 4566888888899 999999988 354443 2 55799999999998
Q ss_pred cccccccccccccccccCCCCcccEEeEccCcccCc-CccccCCCCCccEEEEecCCCCccCCccccccCCCCCccccee
Q 043856 174 LDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLR 252 (275)
Q Consensus 174 ~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~ 252 (275)
+.--...+. .+..+++|+.|++++| ++.. .|..+..+++|++|++++|..+..++. +..+++|++|+
T Consensus 98 n~l~~~~~~------~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~-----l~~l~~L~~L~ 165 (197)
T 4ezg_A 98 KDVTSDKIP------NLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLN 165 (197)
T ss_dssp TTCBGGGSC------CCTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG-----GGGCSSCCEEE
T ss_pred CccCcccCh------hhcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccHh-----hcCCCCCCEEE
Confidence 642222222 2337999999999998 5664 677789999999999999975776653 67799999999
Q ss_pred cc---ccccchhhcCCCCccEEEecC
Q 043856 253 IG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 253 l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
++ +..+| .+..+++|+.|++++
T Consensus 166 l~~n~i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 166 IQFDGVHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CTTBCCCCCT-TGGGCSSCCEEEECB
T ss_pred CCCCCCcChH-HhccCCCCCEEEeeC
Confidence 97 77777 788999999999874
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=1.4e-13 Score=116.63 Aligned_cols=186 Identities=19% Similarity=0.217 Sum_probs=91.8
Q ss_pred CCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCcc-ccccccccCC
Q 043856 75 LNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNE-FLGIEEISED 149 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~-~~~~~~~~~~ 149 (275)
++|++|+++++....++. .+.++++|++|++++| .+..++ .+..++ |++|+++++. +..++.. +.....+..+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEE
Confidence 356777776666555433 5666677777777664 333333 255666 7777776554 4444322 1111111000
Q ss_pred CCCC----CCCCCCCCCCCcccEeeccccccccc--cccccccccccCCCCcccEEeEccCcccCcCc-cccCCCCCcc-
Q 043856 150 DPSS----SSSSSSVTAFPKLKSLEIKELDLLEE--WNYRITRKENISIMPRLSSLKVGSCNKLKALP-DYLLQTTALQ- 221 (275)
Q Consensus 150 ~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~- 221 (275)
.+.. ......+..+++|+.|+++++. +.. ++. .+..+++|+.|++++| +++.++ ..+..+++|+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPE------YFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCG------GGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTT
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCc-cceecCch------hhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccc
Confidence 0000 0000013345555555555432 111 111 1113555555555555 344432 2233333333
Q ss_pred ---EEEEecCCCCccCCccccccCCCCCcccceecc---ccccchh-hcCCCCccEEEecC
Q 043856 222 ---ELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDY-LLRTTMLQELSISE 275 (275)
Q Consensus 222 ---~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~-l~~L~~L~~L~l~~ 275 (275)
.|+++++ .+..++. ......+|++|+++ ++.+|.. +..+++|+.|++++
T Consensus 178 l~l~L~ls~n-~l~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 178 LNLSLDLSLN-PMNFIQP----GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CCEEEECCSS-CCCEECT----TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred cceeeecCCC-cccccCc----cccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 4555544 3333333 23344589999996 7777764 58899999999874
No 59
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=9.7e-13 Score=110.09 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=94.7
Q ss_pred HHHHhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFL 141 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~ 141 (275)
.+|..+. +++++|+++++....+ |..+.++++|++|++++| .+..++. +..++ |+.|+++++. ++.++...
T Consensus 28 ~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~- 102 (251)
T 3m19_A 28 SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGV- 102 (251)
T ss_dssp SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT-
T ss_pred ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCc-ccccChhH-
Confidence 3454443 4777777777766553 345667777777777774 3443432 56677 7777777654 55554321
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCc
Q 043856 142 GIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTAL 220 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L 220 (275)
+..+++|+.|+++++ .+..++. ..+..+++|+.|++++| +++.+|. .+..+++|
T Consensus 103 ------------------~~~l~~L~~L~L~~N-~l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 103 ------------------FDHLTQLDKLYLGGN-QLKSLPS-----GVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNL 157 (251)
T ss_dssp ------------------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred ------------------hcccCCCCEEEcCCC-cCCCcCh-----hHhccCCcccEEECcCC-cCCccCHHHcCcCcCC
Confidence 335677777777764 3443332 11225677777777776 5666665 46677777
Q ss_pred cEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 221 QELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 221 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
++|++++| .+..++.. .+..+++|++|+++
T Consensus 158 ~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 158 QTLSLSTN-QLQSVPHG---AFDRLGKLQTITLF 187 (251)
T ss_dssp CEEECCSS-CCSCCCTT---TTTTCTTCCEEECC
T ss_pred CEEECCCC-cCCccCHH---HHhCCCCCCEEEee
Confidence 77777776 34444431 35567777777774
No 60
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.48 E-value=8.6e-14 Score=129.40 Aligned_cols=189 Identities=21% Similarity=0.205 Sum_probs=112.9
Q ss_pred CCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcC---C-CCCCcc-cceeeccccccccccCcccccccccc
Q 043856 73 PPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHL---P-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEIS 147 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~l---p-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~ 147 (275)
.+++|++|+++++....... ...+++|++|++++|. +... | .+..++ |++|+++++. +..++..+.....+.
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~ 399 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLE 399 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCC-CCBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCC
T ss_pred cccccCEEeCcCCccccccc-cccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccccccccccCCCC
Confidence 45566666666655433111 1455666666666542 2211 1 133444 5555555443 333333222222222
Q ss_pred CCCCCC-----CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccC--cCccccCCCCCc
Q 043856 148 EDDPSS-----SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLK--ALPDYLLQTTAL 220 (275)
Q Consensus 148 ~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L 220 (275)
.+.+.. ......+..+++|+.|+++++.-....+. .+..+++|+.|++++|. +. .+|..+..+++|
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG------IFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNL 472 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT------TTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTC
T ss_pred EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh------hhhcCCcCcEEECcCCc-CccccchhhhhcccCC
Confidence 111110 00112355788999999988753332222 23368999999999984 54 588889999999
Q ss_pred cEEEEecCCCCccCCccccccCCCCCcccceecc---ccccc-hhhcCCCCccEEEecC
Q 043856 221 QELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLP-DYLLRTTMLQELSISE 275 (275)
Q Consensus 221 ~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp-~~l~~L~~L~~L~l~~ 275 (275)
++|++++|......|. .+..+++|++|+++ +..+| ..+.++++|+.|++++
T Consensus 473 ~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPT----AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccccCChh----hhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence 9999999854333354 67789999999996 66665 4678999999999874
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.47 E-value=3.4e-13 Score=114.29 Aligned_cols=174 Identities=15% Similarity=0.176 Sum_probs=109.4
Q ss_pred hcCCCCCCCeEEecccCCcccc-cccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCc-cccccc
Q 043856 70 ALQPPLNVEKLWIIFYGGNILP-KWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGN-EFLGIE 144 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~-~~~~~~ 144 (275)
.+..+++|++|++++|....++ ..+..+++|++|++++|. +..++ .+..++ |++|+++++. +..++. .+....
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 124 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLK 124 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCC-ccccCchhcccCC
Confidence 5667778888888777665543 356677788888887743 33333 356677 7777777654 444433 222222
Q ss_pred cccCCCCCCC-----CCCCCCCCCCcccEeecccccccccccc-ccccccccCCCCccc-EEeEccCcccCcCccccCCC
Q 043856 145 EISEDDPSSS-----SSSSSVTAFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLS-SLKVGSCNKLKALPDYLLQT 217 (275)
Q Consensus 145 ~~~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~-~L~l~~c~~l~~lp~~l~~l 217 (275)
.+..+.++.. .....+..+++|+.|+++++. +..++. .+. ....++.|. .|+++++ .++.+|......
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~---~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~ 199 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR---VLHQMPLLNLSLDLSLN-PMNFIQPGAFKE 199 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH---HHHTCTTCCEEEECCSS-CCCEECTTSSCS
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhh---hhhhccccceeeecCCC-cccccCccccCC
Confidence 2222222211 123346778999999999864 333321 111 111333443 8999998 688888777777
Q ss_pred CCccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 218 TALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.+|++|++++|. ++.++.. .+..+++|++|+++
T Consensus 200 ~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 200 IRLKELALDTNQ-LKSVPDG---IFDRLTSLQKIWLH 232 (276)
T ss_dssp CCEEEEECCSSC-CSCCCTT---TTTTCCSCCEEECC
T ss_pred CcccEEECCCCc-eeecCHh---HhcccccccEEEcc
Confidence 799999999884 7777662 45679999999996
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.47 E-value=5.9e-14 Score=121.65 Aligned_cols=166 Identities=13% Similarity=0.111 Sum_probs=99.0
Q ss_pred cCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccccccCCCCCCCC---------------
Q 043856 94 LTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSS--------------- 155 (275)
Q Consensus 94 l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~--------------- 155 (275)
+..+++|++|++++| .+..++ .+..++ |++|+++++. +..++. +.....+..+.++...
T Consensus 30 ~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l 106 (317)
T 3o53_A 30 RQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHA 106 (317)
T ss_dssp HTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEEC
T ss_pred hccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEEC
Confidence 346789999999995 455555 378899 9999999875 444332 3222222221111000
Q ss_pred -----CCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-cccc-CCCCCccEEEEecC
Q 043856 156 -----SSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYL-LQTTALQELSIYSC 228 (275)
Q Consensus 156 -----~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l-~~l~~L~~L~l~~c 228 (275)
.......+++|+.|+++++. +..++. ..+..+++|+.|++++| .+..+ |..+ ..+++|++|++++|
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~-l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNK-ITMLRD-----LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSC-CCSGGG-----BCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CCCccCCcCccccCCCCEEECCCCC-CCCccc-----hhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC
Confidence 00001123444444444432 222111 11224677888888777 56654 3333 35788888888876
Q ss_pred CCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 229 ENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 229 ~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.+..++. ...+++|++|+++ ++.+|..+..+++|+.|++++
T Consensus 180 -~l~~~~~-----~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 180 -FIYDVKG-----QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223 (317)
T ss_dssp -CCCEEEC-----CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT
T ss_pred -cCccccc-----ccccccCCEEECCCCcCCcchhhhcccCcccEEECcC
Confidence 3555543 3358899999996 888888899999999999874
No 63
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=2e-13 Score=117.88 Aligned_cols=189 Identities=15% Similarity=0.122 Sum_probs=112.7
Q ss_pred CCCCCeEEecccCCcc-ccccc--CCCCCCcEEeeecCCCCCcCCC-----CCCcc-cceeeccccccccccCc-ccccc
Q 043856 74 PLNVEKLWIIFYGGNI-LPKWL--TSLTNLRDLKLVFCENCEHLPP-----LGKLP-LEKLELRDLKSVKRVGN-EFLGI 143 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~-lp~~l--~~l~~L~~L~L~~c~~~~~lp~-----l~~L~-L~~L~l~~~~~l~~l~~-~~~~~ 143 (275)
+++|++|++++|.... .|..+ ..+++|++|++++|......+. +..++ |++|+++++. +..++. .+...
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccC
Confidence 3568888888877654 56555 6788888888888644433332 23466 7888887665 444432 22222
Q ss_pred ccccCCCCCCCCC--------CCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-cccc
Q 043856 144 EEISEDDPSSSSS--------SSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYL 214 (275)
Q Consensus 144 ~~~~~~~~~~~~~--------~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l 214 (275)
..+..+.++.... ......+++|+.|+++++. +..++... ......+++|+.|++++| +++.+ |..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~--~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~ 244 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVC--AALAAAGVQPHSLDLSHN-SLRATVNPSA 244 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHH--HHHHHHTCCCSSEECTTS-CCCCCCCSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHH--HHHHhcCCCCCEEECCCC-CCCccchhhH
Confidence 2222222221110 1112456777777776653 32222100 000114688888888887 56664 6666
Q ss_pred CCC---CCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 215 LQT---TALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 215 ~~l---~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
..+ ++|++|++++| .++.+|. .+ .++|++|+++ ++.+|. +..+++|+.|++++
T Consensus 245 ~~~~~~~~L~~L~Ls~N-~l~~lp~----~~--~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFA-GLEQVPK----GL--PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp SSCCCCTTCCCEECCSS-CCCSCCS----CC--CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSS
T ss_pred HhccCcCcCCEEECCCC-CCCchhh----hh--cCCCCEEECCCCcCCCCch-hhhCCCccEEECcC
Confidence 665 68888888876 5567766 33 3788888886 777764 67788888888864
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.47 E-value=2.3e-13 Score=125.36 Aligned_cols=61 Identities=15% Similarity=0.000 Sum_probs=39.4
Q ss_pred HhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccc
Q 043856 69 EALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLK 131 (275)
Q Consensus 69 ~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~ 131 (275)
..+..+++|++|++++|....+ |..++++++|++|++++| .+..+|.. .++ |++|+++++.
T Consensus 39 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 39 SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH-PTVNLKHLDLSFNA 101 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC-CCCCCSEEECCSSC
T ss_pred hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc-ccCCccEEeccCCc
Confidence 4566677777777777766553 566777777777777773 44455544 555 6666666554
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.47 E-value=8.1e-13 Score=111.97 Aligned_cols=151 Identities=22% Similarity=0.251 Sum_probs=89.4
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccccccccc
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFLGIEEI 146 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~ 146 (275)
.+..+++|++|++++|....++ .+..+++|++|++++| .+..++. ++.++ |++|+++++. +..++...
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------ 128 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGV------ 128 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT------
T ss_pred ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHHH------
Confidence 4666788888888887766543 6778888888888885 4444543 56777 8888888764 55554331
Q ss_pred cCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEE
Q 043856 147 SEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSI 225 (275)
Q Consensus 147 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l 225 (275)
+..+++|+.|++.++ .+..++. ..+..+++|+.|++++| +++.+|.. +..+++|++|++
T Consensus 129 -------------~~~l~~L~~L~L~~n-~l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 129 -------------FDKLTNLTYLNLAHN-QLQSLPK-----GVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp -------------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred -------------hccCCCCCEEECCCC-ccCccCH-----HHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEEC
Confidence 235566666666654 2333331 11224566666666666 45555433 355666666666
Q ss_pred ecCCCCccCCccccccCCCCCcccceec
Q 043856 226 YSCENLEELPIPEDRRTTDIPRLSSLRI 253 (275)
Q Consensus 226 ~~c~~l~~l~~~~~~~~~~l~~L~~L~l 253 (275)
++|. +..++.. .+..+++|++|++
T Consensus 189 ~~N~-l~~~~~~---~~~~l~~L~~L~l 212 (272)
T 3rfs_A 189 YQNQ-LKSVPDG---VFDRLTSLQYIWL 212 (272)
T ss_dssp CSSC-CSCCCTT---TTTTCTTCCEEEC
T ss_pred CCCc-CCccCHH---HHhCCcCCCEEEc
Confidence 6653 3333331 2344555555555
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.47 E-value=1.8e-13 Score=126.83 Aligned_cols=55 Identities=24% Similarity=0.151 Sum_probs=27.3
Q ss_pred CCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeecccc
Q 043856 75 LNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDL 130 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~ 130 (275)
++|++|+++++.... .|..+.++++|++|++++|. +..++ .++.++ |++|+++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n 84 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDN 84 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCC
Confidence 455555555555444 23445555555555555532 22222 244555 555555544
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.46 E-value=1.7e-13 Score=118.51 Aligned_cols=187 Identities=21% Similarity=0.256 Sum_probs=126.2
Q ss_pred CCeEEecccCCcc--cccccC-------CCCCCcEEeeecCCCCCcCCC-C--CCcc-cceeeccccccccccCcccccc
Q 043856 77 VEKLWIIFYGGNI--LPKWLT-------SLTNLRDLKLVFCENCEHLPP-L--GKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 77 L~~L~l~~~~~~~--lp~~l~-------~l~~L~~L~L~~c~~~~~lp~-l--~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
|+.|+++++.... +|..+. .+++|++|++++|.....+|. + ..++ |++|+++++. +..+|..+...
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHH
Confidence 7777887766533 666655 799999999999765556664 3 7888 9999999875 66555433322
Q ss_pred -----ccccCCCCC----CCCCCCCCCCCCcccEeeccccccccc--cccccccccccCCCCcccEEeEccCcccCcCc-
Q 043856 144 -----EEISEDDPS----SSSSSSSVTAFPKLKSLEIKELDLLEE--WNYRITRKENISIMPRLSSLKVGSCNKLKALP- 211 (275)
Q Consensus 144 -----~~~~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp- 211 (275)
..+..+.++ .......+..+++|+.|+++++.-... ++..+ ....+++|+.|++++| +++.++
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----~~~~l~~L~~L~L~~N-~l~~~~~ 218 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL----CPLKFPTLQVLALRNA-GMETPSG 218 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS----CTTSCTTCCEEECTTS-CCCCHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH----HhccCCCCCEEECCCC-cCcchHH
Confidence 222222111 122334567889999999988763322 11111 1136899999999998 677443
Q ss_pred --cc-cCCCCCccEEEEecCCCCccCC-ccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 212 --DY-LLQTTALQELSIYSCENLEELP-IPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 212 --~~-l~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
.. +..+++|++|++++|. +...+ .. .+..+++|++|+++ ++.+|..+. ++|++|++++
T Consensus 219 ~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~ 283 (312)
T 1wwl_A 219 VCSALAAARVQLQGLDLSHNS-LRDAAGAP---SCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSY 283 (312)
T ss_dssp HHHHHHHTTCCCSEEECTTSC-CCSSCCCS---CCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCS
T ss_pred HHHHHHhcCCCCCEEECCCCc-CCcccchh---hhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCC
Confidence 22 3467999999999885 44433 21 34567999999996 888998776 8999999874
No 68
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.46 E-value=6.4e-13 Score=121.07 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=47.8
Q ss_pred CCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCc
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTML 268 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L 268 (275)
.+++|+.|++++| ++..++. +..+++|++|++++| .+..++ .+..+++|+.|+++ +..++. +..+++|
T Consensus 307 ~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 377 (466)
T 1o6v_A 307 NLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDVS-----SLANLTNINWLSAGHNQISDLTP-LANLTRI 377 (466)
T ss_dssp GCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCG-----GGTTCTTCCEEECCSSCCCBCGG-GTTCTTC
T ss_pred CCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCch-----hhccCCCCCEEeCCCCccCccch-hhcCCCC
Confidence 4666777777666 4555544 556677777777766 343332 35567778888775 544443 6777888
Q ss_pred cEEEecC
Q 043856 269 QELSISE 275 (275)
Q Consensus 269 ~~L~l~~ 275 (275)
+.|++++
T Consensus 378 ~~L~l~~ 384 (466)
T 1o6v_A 378 TQLGLND 384 (466)
T ss_dssp CEEECCC
T ss_pred CEEeccC
Confidence 8877753
No 69
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=118.07 Aligned_cols=191 Identities=19% Similarity=0.160 Sum_probs=120.3
Q ss_pred CCCCeEEecccCCcc--cccc--cCCCCCCcEEeeecCCCCCcCCC-C--CCcc-cceeeccccccccc-cC----cccc
Q 043856 75 LNVEKLWIIFYGGNI--LPKW--LTSLTNLRDLKLVFCENCEHLPP-L--GKLP-LEKLELRDLKSVKR-VG----NEFL 141 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~--lp~~--l~~l~~L~~L~L~~c~~~~~lp~-l--~~L~-L~~L~l~~~~~l~~-l~----~~~~ 141 (275)
..++.+.+.++.... +... ...+++|++|++++|......|. + ..++ |+.|+++++. +.. .+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhh
Confidence 357888888765432 1111 11457799999999766656654 3 7788 9999999875 332 11 1111
Q ss_pred ccccccCCCCC----CCCCCCCCCCCCcccEeeccccccccc--cccccccccccCCCCcccEEeEccCcccCcCccc--
Q 043856 142 GIEEISEDDPS----SSSSSSSVTAFPKLKSLEIKELDLLEE--WNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-- 213 (275)
Q Consensus 142 ~~~~~~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-- 213 (275)
....+..+.++ .......+..+++|+.|+++++.-... ++. ......+++|+.|++++| +++.+|..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~ 217 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA----ALCPHKFPAIQNLALRNT-GMETPTGVCA 217 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT----TSCTTSSCCCCSCBCCSS-CCCCHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH----HHhhhcCCCCCEEECCCC-CCCchHHHHH
Confidence 11112111111 122334566788999999988753221 211 111236889999999998 67766542
Q ss_pred --cCCCCCccEEEEecCCCCccC-CccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 214 --LLQTTALQELSIYSCENLEEL-PIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 214 --l~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
+..+++|++|++++|. +... |.... ....+++|++|+++ ++.+|..+. ++|+.|++++
T Consensus 218 ~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~ 281 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNS-LRATVNPSAP-RCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSS 281 (310)
T ss_dssp HHHHHTCCCSSEECTTSC-CCCCCCSCCS-SCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCS
T ss_pred HHHhcCCCCCEEECCCCC-CCccchhhHH-hccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCC
Confidence 4678999999999885 4444 54111 22224799999996 888888765 7999999874
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.45 E-value=2.8e-12 Score=108.43 Aligned_cols=166 Identities=22% Similarity=0.280 Sum_probs=128.6
Q ss_pred CCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 76 NVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
+.+.++++++....+|..+. ++|++|++++| .+..++ .+..++ |++|+++++. ++.++...
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~------------ 80 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGI------------ 80 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTT------------
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhh------------
Confidence 57889999888777887654 68999999995 456665 378899 9999999875 66666542
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCC
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENL 231 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l 231 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.+|. .+..+++|++|++++| .+
T Consensus 81 -------~~~l~~L~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l 145 (270)
T 2o6q_A 81 -------FKELKNLETLWVTDNK-LQALPI-----GVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-EL 145 (270)
T ss_dssp -------TSSCTTCCEEECCSSC-CCCCCT-----TTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred -------hcCCCCCCEEECCCCc-CCcCCH-----hHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cC
Confidence 3478999999998764 444442 12336899999999998 6877764 4688999999999998 56
Q ss_pred ccCCccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 232 EELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 232 ~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
..++.. .+..+++|++|+++ ++.+|. .+..+++|+.|++++
T Consensus 146 ~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 146 QSLPKG---VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHh---HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCC
Confidence 666652 46789999999996 777775 578999999999864
No 71
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.45 E-value=8.8e-15 Score=127.36 Aligned_cols=174 Identities=16% Similarity=0.174 Sum_probs=79.8
Q ss_pred cCCCCCCCeEEecccCCcc--cccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccc--cCccccccc
Q 043856 71 LQPPLNVEKLWIIFYGGNI--LPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKR--VGNEFLGIE 144 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~--l~~~~~~~~ 144 (275)
+..+++|++|++++|.... +|..+..+++|++|++++|......+ .++.++ |++|++++|..++. ++..
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~----- 163 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL----- 163 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-----
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-----
Confidence 3345566666666554322 44455556666666666543221111 244455 66666665533331 2211
Q ss_pred cccCCCCCCCCCCCCCCCCCcccEeeccccccccc--cccccccccccCCCC-cccEEeEccCc-cc--CcCccccCCCC
Q 043856 145 EISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEE--WNYRITRKENISIMP-RLSSLKVGSCN-KL--KALPDYLLQTT 218 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~i~~~~~~~~l~-~L~~L~l~~c~-~l--~~lp~~l~~l~ 218 (275)
+..+++|+.|++.+|..+.. ++.. ...++ +|+.|++++|. .+ ..+|..+.+++
T Consensus 164 ---------------~~~~~~L~~L~l~~~~~l~~~~~~~~------~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~ 222 (336)
T 2ast_B 164 ---------------LSSCSRLDELNLSWCFDFTEKHVQVA------VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222 (336)
T ss_dssp ---------------HHHCTTCCEEECCCCTTCCHHHHHHH------HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred ---------------HhcCCCCCEEcCCCCCCcChHHHHHH------HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence 22455556665555533332 1110 11355 55666655553 22 22444444555
Q ss_pred CccEEEEecCCCCc-cCCccccccCCCCCcccceecc-cccc-ch---hhcCCCCccEEEec
Q 043856 219 ALQELSIYSCENLE-ELPIPEDRRTTDIPRLSSLRIG-LKVL-PD---YLLRTTMLQELSIS 274 (275)
Q Consensus 219 ~L~~L~l~~c~~l~-~l~~~~~~~~~~l~~L~~L~l~-l~~l-p~---~l~~L~~L~~L~l~ 274 (275)
+|++|++++|..+. ..+. .+..+++|++|+++ ...+ |. .++++++|+.|+++
T Consensus 223 ~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQ----EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp TCSEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred CCCEEeCCCCCcCCHHHHH----HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 56666655554332 1222 34445555555554 1122 11 34555556655554
No 72
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=4.7e-13 Score=114.67 Aligned_cols=145 Identities=22% Similarity=0.261 Sum_probs=111.1
Q ss_pred hcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccC
Q 043856 70 ALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 70 ~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
.+..+++|++|++++|....++. +..+++|++|++++| .+..++.+..++ |+.|++++|. +..++ .
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~-i~~~~-~--------- 129 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHNG-ISDIN-G--------- 129 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTSC-CCCCG-G---------
T ss_pred hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChhhccCCCCCEEECCCCc-CCCCh-h---------
Confidence 46778999999999998877776 889999999999994 566778888899 9999999875 55543 1
Q ss_pred CCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecC
Q 043856 149 DDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 149 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 228 (275)
+..+++|+.|+++++. +..+. .+..+++|+.|++++| +++.++. +..+++|+.|++++|
T Consensus 130 -----------l~~l~~L~~L~l~~n~-l~~~~-------~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 130 -----------LVHLPQLESLYLGNNK-ITDIT-------VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp -----------GGGCTTCCEEECCSSC-CCCCG-------GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred -----------hcCCCCCCEEEccCCc-CCcch-------hhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC
Confidence 4468888888888753 33332 2226888888888888 6777765 778888888888887
Q ss_pred CCCccCCccccccCCCCCcccceecc
Q 043856 229 ENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 229 ~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.+..++ .+..+++|+.|+++
T Consensus 189 -~i~~l~-----~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 189 -HISDLR-----ALAGLKNLDVLELF 208 (291)
T ss_dssp -CCCBCG-----GGTTCTTCSEEEEE
T ss_pred -cCCCCh-----hhccCCCCCEEECc
Confidence 455554 35678888888885
No 73
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.44 E-value=1.3e-12 Score=109.42 Aligned_cols=166 Identities=19% Similarity=0.249 Sum_probs=102.2
Q ss_pred CCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 76 NVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
+.++++++++....+|..+. +++++|++++|. +..++ .+..++ |++|+++++. +..++...
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~------------ 78 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGV------------ 78 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT------------
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCHhH------------
Confidence 45667777666666676554 577777777743 33333 266677 7777777654 54443321
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCCCC
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCENL 231 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l 231 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.+|.. +..+++|++|++++| .+
T Consensus 79 -------~~~l~~L~~L~L~~n~-l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l 143 (251)
T 3m19_A 79 -------FDDLTELGTLGLANNQ-LASLPL-----GVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QL 143 (251)
T ss_dssp -------TTTCTTCCEEECTTSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred -------hccCCcCCEEECCCCc-ccccCh-----hHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cC
Confidence 3456777777777643 333331 12235677777777776 56666654 466777777777776 45
Q ss_pred ccCCccccccCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 232 EELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 232 ~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
..++.. .+..+++|++|+++ ++.+|. .+..+++|+.|++++
T Consensus 144 ~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 144 QSIPAG---AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CccCHH---HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 555541 35567777777775 565554 566777777777753
No 74
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.43 E-value=5.4e-13 Score=122.93 Aligned_cols=188 Identities=19% Similarity=0.123 Sum_probs=99.2
Q ss_pred CCCCCeEEecccCCc-cccccc-----CCCCCCcEEeeecCCCCCcCC---------------------------CCCCc
Q 043856 74 PLNVEKLWIIFYGGN-ILPKWL-----TSLTNLRDLKLVFCENCEHLP---------------------------PLGKL 120 (275)
Q Consensus 74 l~~L~~L~l~~~~~~-~lp~~l-----~~l~~L~~L~L~~c~~~~~lp---------------------------~l~~L 120 (275)
.++|++|++++|... .+|.++ +++++|+.+++++|.. .+| ....+
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l 323 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSC
T ss_pred hCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhC
Confidence 357888888877655 367766 5666666666655332 222 11445
Q ss_pred c-cceeeccccccccccCccccccccccCCCCCCCCCC------CCCCCCCcccEeeccccccccccccccccccccCCC
Q 043856 121 P-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSS------SSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIM 193 (275)
Q Consensus 121 ~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~------~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l 193 (275)
+ |++|+++++.....+|..+.....+..+.++..... ..+..+++|+.|+++++.-...++. ..+..+
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-----~~~~~l 398 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-----GDCSWT 398 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-----CSCCCC
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc-----chhccC
Confidence 5 666666665422223333221111111111111000 1133455555555554432111221 112245
Q ss_pred CcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchh-hcCCCCcc
Q 043856 194 PRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDY-LLRTTMLQ 269 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~-l~~L~~L~ 269 (275)
++|+.|++++|.-...+|..+. ++|++|++++| .+..+|. .+..+++|++|+++ ++.+|.. +..+++|+
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPK----QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccch----hhhcCCCCCEEECCCCcCCccCHHHhccCCccc
Confidence 6666666666632123444332 56777777766 4556665 45578888888886 7778775 77888888
Q ss_pred EEEecC
Q 043856 270 ELSISE 275 (275)
Q Consensus 270 ~L~l~~ 275 (275)
+|++++
T Consensus 472 ~L~l~~ 477 (520)
T 2z7x_B 472 KIWLHT 477 (520)
T ss_dssp EEECCS
T ss_pred EEECcC
Confidence 888764
No 75
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=2e-12 Score=105.03 Aligned_cols=155 Identities=21% Similarity=0.205 Sum_probs=116.8
Q ss_pred CCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccccccccccCC
Q 043856 74 PLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISED 149 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 149 (275)
.++|++|+++++....+|. .+..+++|++|++++| .+..++. +..++ |++|+++++. +..++...
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~--------- 95 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGV--------- 95 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhH---------
Confidence 4589999999998777654 4679999999999995 5566664 67888 9999999875 66665431
Q ss_pred CCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecC
Q 043856 150 DPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSC 228 (275)
Q Consensus 150 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c 228 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ .++.+|.. +..+++|++|++++|
T Consensus 96 ----------~~~l~~L~~L~L~~N~-l~~~~~-----~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 96 ----------FDKLTQLKELALNTNQ-LQSLPD-----GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ----------TTTCTTCCEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred ----------hcCccCCCEEEcCCCc-CcccCH-----hHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 3478999999998753 444442 12336899999999998 68887765 678999999999998
Q ss_pred CCCccCCccccccCCCCCcccceecc----ccccchhhcCCCC
Q 043856 229 ENLEELPIPEDRRTTDIPRLSSLRIG----LKVLPDYLLRTTM 267 (275)
Q Consensus 229 ~~l~~l~~~~~~~~~~l~~L~~L~l~----l~~lp~~l~~L~~ 267 (275)
+. ...+++|++|+++ .+.+|.+++.++.
T Consensus 159 ~~-----------~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 159 PW-----------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CB-----------CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred Ce-----------ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 42 2346788888885 4477877776653
No 76
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.43 E-value=1.8e-13 Score=124.57 Aligned_cols=184 Identities=20% Similarity=0.229 Sum_probs=96.5
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccCCcc-cccccCCCCCC-------------cEEeeecCCCCCcCCCCCCcc-cceee
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNL-------------RDLKLVFCENCEHLPPLGKLP-LEKLE 126 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L-------------~~L~L~~c~~~~~lp~l~~L~-L~~L~ 126 (275)
+....+|++++.+++|++|++++|.... +|..++.+++| ++|++++| .+..+|.+ .+ |+.|+
T Consensus 21 n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~--~~~L~~L~ 97 (454)
T 1jl5_A 21 SNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL--PPHLESLV 97 (454)
T ss_dssp -------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSC--CTTCSEEE
T ss_pred CchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCCC--cCCCCEEE
Confidence 3446789999999999999999887654 88888888765 88888885 45666652 34 99999
Q ss_pred ccccccccccCccccccccccCCCCCCCCCCCCCCCC-CcccEeeccccccccccccccccccccCCCCcccEEeEccCc
Q 043856 127 LRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAF-PKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCN 205 (275)
Q Consensus 127 l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~ 205 (275)
++++. ++.+|.... .+..+.++.. ....+..+ ++|+.|+++++. +..++ .+..+++|++|++++|
T Consensus 98 l~~n~-l~~lp~~~~---~L~~L~l~~n-~l~~l~~~~~~L~~L~L~~n~-l~~lp-------~~~~l~~L~~L~l~~N- 163 (454)
T 1jl5_A 98 ASCNS-LTELPELPQ---SLKSLLVDNN-NLKALSDLPPLLEYLGVSNNQ-LEKLP-------ELQNSSFLKIIDVDNN- 163 (454)
T ss_dssp CCSSC-CSSCCCCCT---TCCEEECCSS-CCSCCCSCCTTCCEEECCSSC-CSSCC-------CCTTCTTCCEEECCSS-
T ss_pred ccCCc-CCccccccC---CCcEEECCCC-ccCcccCCCCCCCEEECcCCC-CCCCc-------ccCCCCCCCEEECCCC-
Confidence 98664 666664211 1111111100 00011112 456666665542 32232 1225666666666666
Q ss_pred ccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEec
Q 043856 206 KLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 206 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~ 274 (275)
+++.+|.. .++|++|++++| .+..+|. +..+++|++|+++ ++.+|.. .++|++|+++
T Consensus 164 ~l~~lp~~---~~~L~~L~L~~n-~l~~l~~-----~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 164 SLKKLPDL---PPSLEFIAAGNN-QLEELPE-----LQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAG 223 (454)
T ss_dssp CCSCCCCC---CTTCCEEECCSS-CCSSCCC-----CTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECC
T ss_pred cCcccCCC---cccccEEECcCC-cCCcCcc-----ccCCCCCCEEECCCCcCCcCCCC---cCcccEEECc
Confidence 45556543 246666666665 3444442 4566777777765 5555533 2466666664
No 77
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=9.5e-13 Score=123.72 Aligned_cols=162 Identities=22% Similarity=0.269 Sum_probs=127.9
Q ss_pred CCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCC
Q 043856 73 PPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDP 151 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 151 (275)
.+++|+.|.++++....+| .+..+++|+.|+|++| .+..++.+..++ |+.|+|++|. +..++ .
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~-~------------ 104 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENK-IKDLS-S------------ 104 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCCT-T------------
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCCC-CCCCh-h------------
Confidence 4678999999998877666 5789999999999995 556666688888 9999999875 65554 2
Q ss_pred CCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCC
Q 043856 152 SSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENL 231 (275)
Q Consensus 152 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 231 (275)
+..+++|+.|+++++. +..++ .+..+++|+.|++++| .+..+ ..+..+++|+.|+|++| .+
T Consensus 105 --------l~~l~~L~~L~Ls~N~-l~~l~-------~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N-~l 165 (605)
T 1m9s_A 105 --------LKDLKKLKSLSLEHNG-ISDIN-------GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QI 165 (605)
T ss_dssp --------STTCTTCCEEECTTSC-CCCCG-------GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSS-CC
T ss_pred --------hccCCCCCEEEecCCC-CCCCc-------cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCC-cC
Confidence 5578999999998764 33333 1236899999999998 68888 46888999999999988 45
Q ss_pred ccCCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 232 EELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 232 ~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
..++. +..+++|+.|+++ +..+| .+..+++|+.|+|++
T Consensus 166 ~~~~~-----l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 166 SDIVP-----LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 206 (605)
T ss_dssp CCCGG-----GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCS
T ss_pred CCchh-----hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccC
Confidence 54443 5678999999996 77776 688999999999864
No 78
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.42 E-value=1.2e-12 Score=122.01 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=48.5
Q ss_pred HHhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccC
Q 043856 68 LEALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVG 137 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~ 137 (275)
+..+..+++|++|++++|....+ |..+..+++|++|++++| .+..+|.. .++ |++|+++++. +..++
T Consensus 69 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~L~Ls~N~-l~~l~ 137 (562)
T 3a79_B 69 MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC-PMASLRHLDLSFND-FDVLP 137 (562)
T ss_dssp GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC-CCTTCSEEECCSSC-CSBCC
T ss_pred hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc-ccccCCEEECCCCC-ccccC
Confidence 35778888888888888876664 667778888888888884 45567655 677 8888888765 55543
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.40 E-value=6.6e-13 Score=116.61 Aligned_cols=79 Identities=24% Similarity=0.284 Sum_probs=57.9
Q ss_pred CCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc-ccccchhhcCCCCcc
Q 043856 192 IMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG-LKVLPDYLLRTTMLQ 269 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~-l~~lp~~l~~L~~L~ 269 (275)
..++|+.|.+.++..++.+|.. +..+++|++|++++| .++.+|.. .+..+++|+.+... ++.+| .+.++++|+
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~---~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~ 249 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY---GLENLKKLRARSTYNLKKLP-TLEKLVALM 249 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS---SCTTCCEEECTTCTTCCCCC-CTTTCCSCC
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh---hhccchHhhhccCCCcCcCC-CchhCcChh
Confidence 4567888888877788888864 577889999998887 67777762 34455555555554 88888 478899999
Q ss_pred EEEecC
Q 043856 270 ELSISE 275 (275)
Q Consensus 270 ~L~l~~ 275 (275)
.+++.+
T Consensus 250 ~l~l~~ 255 (350)
T 4ay9_X 250 EASLTY 255 (350)
T ss_dssp EEECSC
T ss_pred hCcCCC
Confidence 988753
No 80
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.40 E-value=6.9e-12 Score=118.17 Aligned_cols=71 Identities=27% Similarity=0.374 Sum_probs=56.8
Q ss_pred CCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccchhhcCCCCcc
Q 043856 193 MPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQ 269 (275)
Q Consensus 193 l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~ 269 (275)
+++|+.|++++| +++.+| ..+++|++|++++| .+..+|. .+++|++|+++ ++.+|..+.++++|+
T Consensus 220 ~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~-------~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~ 287 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM-------LPSGLLSLSVYRNQLTRLPESLIHLSSET 287 (622)
T ss_dssp CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSSCCCSCCGGGGGSCTTC
T ss_pred CCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc-------ccccCcEEeCCCCCCCcCCHHHhhccccC
Confidence 467888888777 677777 34678888888887 5666665 47889999996 889999999999999
Q ss_pred EEEecC
Q 043856 270 ELSISE 275 (275)
Q Consensus 270 ~L~l~~ 275 (275)
.|++++
T Consensus 288 ~L~L~~ 293 (622)
T 3g06_A 288 TVNLEG 293 (622)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 999874
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.40 E-value=9.8e-13 Score=122.25 Aligned_cols=192 Identities=18% Similarity=0.214 Sum_probs=125.3
Q ss_pred HHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcccccccc
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEE 145 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~ 145 (275)
+++.+..+++|+.|+++++....+|.++..+ +|++|++++|. +..+|. ..++ |+.|+++++......+. .....
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-~~~l~~-~~l~~L~~L~l~~n~~~~~~~~--~~~~~ 348 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK-FGQFPT-LKLKSLKRLTFTSNKGGNAFSE--VDLPS 348 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB-CSSCCB-CBCSSCCEEEEESCBSCCBCCC--CBCTT
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCc-ccccCc-ccccccCEEeCcCCcccccccc--ccCCC
Confidence 4566777889999999988877789888888 99999999854 446665 4566 77777776643222221 00000
Q ss_pred ccCCCCCCCCC------CCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc--cccCCC
Q 043856 146 ISEDDPSSSSS------SSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP--DYLLQT 217 (275)
Q Consensus 146 ~~~~~~~~~~~------~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~l~~l 217 (275)
+..+.++.... ...+..+++|+.|+++++. +..++.. +..+++|+.|++++| .+..++ ..+..+
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~------~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l 420 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN------FLGLEQLEHLDFQHS-NLKQMSEFSVFLSL 420 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE------EETCTTCCEEECTTS-EEESCTTSCTTTTC
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCc-ccccccc------ccccCCCCEEEccCC-ccccccchhhhhcC
Confidence 11111110000 0113356677777776653 2223221 226888999999887 455543 357788
Q ss_pred CCccEEEEecCCCCccCCccccccCCCCCcccceecc---cc--ccchhhcCCCCccEEEecC
Q 043856 218 TALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LK--VLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~--~lp~~l~~L~~L~~L~l~~ 275 (275)
++|++|++++|......+. .+..+++|++|+++ +. .+|..++.+++|++|++++
T Consensus 421 ~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~ 479 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479 (570)
T ss_dssp TTCCEEECTTSCCEECCTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred CCCCEEeCcCCcccccchh----hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC
Confidence 9999999988854444444 56789999999996 43 6888899999999999874
No 82
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.40 E-value=3.6e-12 Score=118.69 Aligned_cols=103 Identities=19% Similarity=0.241 Sum_probs=68.4
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccC-cCccccCCCCCccEEEEecCCCCccCCccc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLK-ALPDYLLQTTALQELSIYSCENLEELPIPE 238 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~ 238 (275)
+..+++|+.|+++++.-...++. .....+++|+.|++++| +++ .+|..+. ++|++|++++| .++.+|.
T Consensus 399 ~~~l~~L~~L~l~~N~l~~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~-- 467 (562)
T 3a79_B 399 TKNMSSLETLDVSLNSLNSHAYD-----RTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNN-RIMSIPK-- 467 (562)
T ss_dssp TTTCTTCCEEECTTSCCBSCCSS-----CCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSS-CCCCCCT--
T ss_pred hcCCCCCCEEECCCCcCCCccCh-----hhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCC-cCcccCh--
Confidence 34567777777766542221331 12235677777777777 343 3444332 67888888877 5667776
Q ss_pred cccCCCCCcccceecc---ccccchh-hcCCCCccEEEecC
Q 043856 239 DRRTTDIPRLSSLRIG---LKVLPDY-LLRTTMLQELSISE 275 (275)
Q Consensus 239 ~~~~~~l~~L~~L~l~---l~~lp~~-l~~L~~L~~L~l~~ 275 (275)
.+..+++|++|+++ ++.+|.. +..+++|+.|++++
T Consensus 468 --~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 468 --DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp --TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCS
T ss_pred --hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecC
Confidence 55678888888886 7788876 78888888888864
No 83
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.39 E-value=4.7e-12 Score=120.35 Aligned_cols=202 Identities=17% Similarity=0.165 Sum_probs=98.8
Q ss_pred HHhcCCCCCCCeEEecccCCcc-cc-cccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeecccccc--ccccCcccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNI-LP-KWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKS--VKRVGNEFL 141 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~-lp-~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~--l~~l~~~~~ 141 (275)
+..+..+++|++|++++|.... +| ..+..+++|++|++++|......+ .+..++ |+.|+++++.. +..+|..+.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 3445555566666665555432 33 344555566666665543211111 233444 55555554421 122233322
Q ss_pred ccccccCCCCCC----CCCCCCCCCCCcccEeeccccccccccccc-cc--cccccCCCCcccEEeEccCcccCcCccc-
Q 043856 142 GIEEISEDDPSS----SSSSSSVTAFPKLKSLEIKELDLLEEWNYR-IT--RKENISIMPRLSSLKVGSCNKLKALPDY- 213 (275)
Q Consensus 142 ~~~~~~~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~-i~--~~~~~~~l~~L~~L~l~~c~~l~~lp~~- 213 (275)
....+..+.++. ......+..+++|+.|+++++. +..++.. +. ....+..+++|+.|++++| +++.+|..
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~ 555 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEV 555 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHH
Confidence 222222222111 1111224456666666666543 2222110 00 0011235677777777776 56666653
Q ss_pred cCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccch-hhc-CCCCccEEEecC
Q 043856 214 LLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLL-RTTMLQELSISE 275 (275)
Q Consensus 214 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~-~L~~L~~L~l~~ 275 (275)
+..+++|+.|++++| .++.+|.. .+..+++|+.|+++ ++.+|. .++ .+++|+.|++++
T Consensus 556 ~~~l~~L~~L~Ls~N-~l~~l~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 556 FKDLFELKIIDLGLN-NLNTLPAS---VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred cccccCcceeECCCC-CCCcCCHh---HhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence 566777777777665 45555552 34566777777775 555554 344 567777777653
No 84
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=5.3e-12 Score=117.73 Aligned_cols=174 Identities=18% Similarity=0.179 Sum_probs=121.0
Q ss_pred CCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCCC
Q 043856 75 LNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSS 153 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 153 (275)
.+|+.|+++++....+|..+ +++|++|++++| .+..+| ..++ |+.|+++++. ++.+|. +.. .+..+.++.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCC
Confidence 38899999888777788766 378999999884 556777 5567 9999998774 667776 332 222222221
Q ss_pred CC--CCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCC
Q 043856 154 SS--SSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENL 231 (275)
Q Consensus 154 ~~--~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l 231 (275)
.. ..+. .+++|+.|+++++. +..++. .+++|+.|++++| +++.+|. +. ++|+.|++++| .+
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---------~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N-~L 192 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQ-LTMLPE---------LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTN-LL 192 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSC-CSCCCC---------CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSS-CC
T ss_pred CcCCCCCC--cCccccEEeCCCCc-cCcCCC---------cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCC-CC
Confidence 11 1111 57789999998764 444442 4789999999998 6888988 65 89999999987 56
Q ss_pred ccCCccccccC-CCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 232 EELPIPEDRRT-TDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 232 ~~l~~~~~~~~-~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
+.+|. ....+ ...+.|+.|+++ ++.+|..+..+++|+.|++++
T Consensus 193 ~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 193 ESLPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp SSCCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCS
T ss_pred Cchhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeC
Confidence 67765 11000 111223999996 889999998999999999874
No 85
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.39 E-value=3e-12 Score=124.92 Aligned_cols=177 Identities=15% Similarity=0.100 Sum_probs=116.0
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcc-cccccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeecccccccccc-Ccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNI-LPKWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRV-GNE 139 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l-~~~ 139 (275)
..+|. -+++|++|++++|.... .|..+.++++|++|++++|.....++ .++.++ |+.|+++++. +..+ |..
T Consensus 17 ~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~ 92 (844)
T 3j0a_A 17 TQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDA 92 (844)
T ss_dssp SCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTS
T ss_pred CCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhH
Confidence 34565 35789999999988766 57788899999999999986666663 378888 9999999876 5555 433
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC--ccccCCC
Q 043856 140 FLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL--PDYLLQT 217 (275)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l--p~~l~~l 217 (275)
+..+++|+.|+++++.-....+. ...+..+++|+.|++++| .+..+ +..++++
T Consensus 93 --------------------~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L 147 (844)
T 3j0a_A 93 --------------------FQGLFHLFELRLYFCGLSDAVLK----DGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKL 147 (844)
T ss_dssp --------------------SCSCSSCCCEECTTCCCSSCCST----TCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTC
T ss_pred --------------------ccCCcccCEeeCcCCCCCccccc----CccccccCCCCEEECCCC-cccccccchhHhhC
Confidence 45788888888887643222221 112336888888888887 56554 2457888
Q ss_pred CCccEEEEecCCCCccCCccccccCCCC--Ccccceecc----ccccchhhcCCCC------ccEEEec
Q 043856 218 TALQELSIYSCENLEELPIPEDRRTTDI--PRLSSLRIG----LKVLPDYLLRTTM------LQELSIS 274 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~~~~~~~~~l--~~L~~L~l~----l~~lp~~l~~L~~------L~~L~l~ 274 (275)
++|++|++++|..-...+. .+..+ ++|+.|+++ ....|..++.+++ |+.|+++
T Consensus 148 ~~L~~L~Ls~N~i~~~~~~----~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls 212 (844)
T 3j0a_A 148 NSLKSIDFSSNQIFLVCEH----ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVS 212 (844)
T ss_dssp SSCCEEEEESSCCCCCCSG----GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCS
T ss_pred CCCCEEECCCCcCCeeCHH----HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecC
Confidence 8888888888643222222 23333 566666664 2223333333333 6666654
No 86
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.39 E-value=1e-11 Score=121.18 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=50.9
Q ss_pred CCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCccC-CccccccCCCCCcccceecc---ccccch-hhcCC
Q 043856 192 IMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEEL-PIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRT 265 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L 265 (275)
.+++|+.|++++| ++..+ |..+..+++|++|++++|. +..+ +. .+..+++|++|+++ +..+|. .+..+
T Consensus 288 ~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 288 TLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYNL-LGELYSS----NFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp SCCCCCEEEEESC-CCCEECTTTTTTCSSCCEEEEESCC-CSCCCSC----SCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred cCCCCCEEECCCC-cCCCCChHHhcCCCCCCEEECCCCC-CCccCHH----HhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 5667777777776 45553 4456677777777777763 3333 33 56667788888775 555543 46777
Q ss_pred CCccEEEecC
Q 043856 266 TMLQELSISE 275 (275)
Q Consensus 266 ~~L~~L~l~~ 275 (275)
++|+.|++++
T Consensus 362 ~~L~~L~Ls~ 371 (844)
T 3j0a_A 362 EKLQTLDLRD 371 (844)
T ss_dssp CCCCEEEEET
T ss_pred CCCCEEECCC
Confidence 7888877753
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.39 E-value=1.8e-14 Score=125.35 Aligned_cols=171 Identities=18% Similarity=0.162 Sum_probs=122.8
Q ss_pred CCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCc-CC-CCCCcc-cceeeccccccccccCccccccccccCCCC
Q 043856 75 LNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEH-LP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDP 151 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~-lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 151 (275)
++++.|+++++.....+..+.++++|++|++++|..... ++ .+..++ |++|++++|..-...+..
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~------------ 137 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT------------ 137 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH------------
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH------------
Confidence 578888888876655555566889999999998753222 44 256778 999999887522223322
Q ss_pred CCCCCCCCCCCCCcccEeeccccccccc--cccccccccccCCCCcccEEeEccCcccCc--CccccCCCC-CccEEEEe
Q 043856 152 SSSSSSSSVTAFPKLKSLEIKELDLLEE--WNYRITRKENISIMPRLSSLKVGSCNKLKA--LPDYLLQTT-ALQELSIY 226 (275)
Q Consensus 152 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~-~L~~L~l~ 226 (275)
+..+++|+.|++++|..+.. ++.. ...+++|+.|++++|+.++. ++..+..++ +|++|+++
T Consensus 138 --------l~~~~~L~~L~L~~~~~l~~~~l~~~------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 138 --------LAKNSNLVRLNLSGCSGFSEFALQTL------LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp --------HTTCTTCSEEECTTCBSCCHHHHHHH------HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred --------HhcCCCCCEEECCCCCCCCHHHHHHH------HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 44689999999999866553 3321 12689999999999966775 677778899 99999999
Q ss_pred cCC-CCc--cCCccccccCCCCCcccceecc----c-cccchhhcCCCCccEEEecC
Q 043856 227 SCE-NLE--ELPIPEDRRTTDIPRLSSLRIG----L-KVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 227 ~c~-~l~--~l~~~~~~~~~~l~~L~~L~l~----l-~~lp~~l~~L~~L~~L~l~~ 275 (275)
+|. .+. .++. .+..+++|++|+++ + ...+..+..+++|+.|++++
T Consensus 204 ~~~~~~~~~~l~~----~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 204 GYRKNLQKSDLST----LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp SCGGGSCHHHHHH----HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCcccCCHHHHHH----HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 985 332 2333 34568999999996 2 24566888999999999874
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.38 E-value=7.5e-12 Score=113.80 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=30.9
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecC
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 228 (275)
+..+++|+.|+++++. +..++. .+++|+.|++++| +++.+| .++.+++|++|++++|
T Consensus 149 ~~~l~~L~~L~l~~N~-l~~lp~---------~~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNS-LKKLPD---------LPPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp CTTCTTCCEEECCSSC-CSCCCC---------CCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS
T ss_pred cCCCCCCCEEECCCCc-CcccCC---------CcccccEEECcCC-cCCcCc-cccCCCCCCEEECCCC
Confidence 4556667777776542 333332 2345666666655 455555 3555555555555554
No 89
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.38 E-value=1.1e-12 Score=121.47 Aligned_cols=133 Identities=18% Similarity=0.206 Sum_probs=87.9
Q ss_pred HHhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeecccccccccc--Ccccc
Q 043856 68 LEALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRV--GNEFL 141 (275)
Q Consensus 68 ~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l--~~~~~ 141 (275)
+..+..+++|++|++++|....+ |..++.+++|++|++++|. +..++. ++.++ |++|+++++. +..+ +..
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-- 118 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSL-- 118 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCS--
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCc-ccccchhhh--
Confidence 45678889999999998887664 4678899999999999854 444443 77888 9999998775 5433 222
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-CccccCCCCCc
Q 043856 142 GIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQTTAL 220 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L 220 (275)
+..+++|+.|++.++..+..++. ..+..+++|+.|++++| +++. +|..+..+++|
T Consensus 119 ------------------~~~l~~L~~L~L~~n~~~~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 119 ------------------FPNLTNLQTLRIGNVETFSEIRR-----IDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDI 174 (549)
T ss_dssp ------------------CTTCTTCCEEEEEESSSCCEECT-----TTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEE
T ss_pred ------------------hhccCCccEEECCCCccccccCH-----hhhhcccccCeeeccCC-cccccChhhhhccccC
Confidence 44677777777776654444431 12225677777777776 3443 55555555555
Q ss_pred cEEEEecC
Q 043856 221 QELSIYSC 228 (275)
Q Consensus 221 ~~L~l~~c 228 (275)
++|++.++
T Consensus 175 ~~L~l~~n 182 (549)
T 2z81_A 175 HHLTLHLS 182 (549)
T ss_dssp EEEEEECS
T ss_pred ceEecccC
Confidence 55555544
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=3.2e-12 Score=107.88 Aligned_cols=143 Identities=19% Similarity=0.212 Sum_probs=100.3
Q ss_pred cCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCC
Q 043856 71 LQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISED 149 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 149 (275)
+..+++|++|++++|....+| .+..+++|++|++++| .+..++.+..++ |+.|+++++. ++.++..
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~L~~N~-l~~l~~~---------- 103 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSPLKDLTKLEELSVNRNR-LKNLNGI---------- 103 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSC-CSCCTTC----------
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChhhccCCCCCEEECCCCc-cCCcCcc----------
Confidence 445678999999888776677 6778899999999884 566666688888 9999998774 6655431
Q ss_pred CCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCC
Q 043856 150 DPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCE 229 (275)
Q Consensus 150 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 229 (275)
.. ++|+.|+++++. +..++ .+..+++|+.|++++| +++.+| .+..+++|+.|++++|
T Consensus 104 -----------~~-~~L~~L~L~~N~-l~~~~-------~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N- 160 (263)
T 1xeu_A 104 -----------PS-ACLSRLFLDNNE-LRDTD-------SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGN- 160 (263)
T ss_dssp -----------CC-SSCCEEECCSSC-CSBSG-------GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTS-
T ss_pred -----------cc-CcccEEEccCCc-cCCCh-------hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCC-
Confidence 12 678888887653 33332 1226778888888777 577776 5677788888888776
Q ss_pred CCccCCccccccCCCCCcccceecc
Q 043856 230 NLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 230 ~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.+..+ . .+..+++|+.|+++
T Consensus 161 ~i~~~-~----~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 161 EITNT-G----GLTRLKKVNWIDLT 180 (263)
T ss_dssp CCCBC-T----TSTTCCCCCEEEEE
T ss_pred cCcch-H----HhccCCCCCEEeCC
Confidence 34444 2 46667777777774
No 91
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.36 E-value=1.1e-11 Score=116.69 Aligned_cols=64 Identities=22% Similarity=0.191 Sum_probs=40.8
Q ss_pred HHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGN 138 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~ 138 (275)
.+|..+. ++|++|++++|....+|. .+++|++|++++| .++.+|. .++ |++|+++++. +..+|.
T Consensus 54 ~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~l~~ 118 (622)
T 3g06_A 54 TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV--LPPGLLELSIFSNP-LTHLPA 118 (622)
T ss_dssp CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CCCCCC
T ss_pred ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC--CCCCCCEEECcCCc-CCCCCC
Confidence 3444443 577777777777666665 5677777777774 4556665 456 7777777653 555554
No 92
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=3.8e-12 Score=99.77 Aligned_cols=137 Identities=25% Similarity=0.284 Sum_probs=101.7
Q ss_pred cCCCCCCCeEEecccCCc--ccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccc-cCccccccccc
Q 043856 71 LQPPLNVEKLWIIFYGGN--ILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKR-VGNEFLGIEEI 146 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~-l~~~~~~~~~~ 146 (275)
-..+++|++|++++|... .+|..+..+++|++|++++|. +..++.+..++ |++|++++|. +.. +|..
T Consensus 20 ~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~------- 90 (168)
T 2ell_A 20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDML------- 90 (168)
T ss_dssp TSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCHH-------
T ss_pred cCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHHH-------
Confidence 345689999999999877 588888899999999999965 55557788888 9999999875 444 4432
Q ss_pred cCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc----ccCCCCCccE
Q 043856 147 SEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD----YLLQTTALQE 222 (275)
Q Consensus 147 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~ 222 (275)
...+++|+.|+++++ .+..++. ...+..+++|+.|++++| .+..+|. .+..+++|++
T Consensus 91 -------------~~~l~~L~~L~Ls~N-~l~~~~~----~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 91 -------------AEKLPNLTHLNLSGN-KLKDIST----LEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp -------------HHHCTTCCEEECBSS-SCCSSGG----GGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCE
T ss_pred -------------HhhCCCCCEEeccCC-ccCcchh----HHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcE
Confidence 335888999998876 3444431 012336888999999888 5777776 6778888999
Q ss_pred EEEecCCCCccCCc
Q 043856 223 LSIYSCENLEELPI 236 (275)
Q Consensus 223 L~l~~c~~l~~l~~ 236 (275)
|++++|. ...+|.
T Consensus 152 L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 152 LDGYDRE-DQEAPD 164 (168)
T ss_dssp ETTEETT-SCBCCS
T ss_pred ecCCCCC-hhhccc
Confidence 9888874 444554
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=1e-12 Score=110.89 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=123.7
Q ss_pred CCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCCC
Q 043856 75 LNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSS 153 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 153 (275)
.++..+.++++....++ .+..+++|++|++++| .+..++.+..++ |+.|+++++. +..++.
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N~-i~~~~~--------------- 80 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHNQ-ISDLSP--------------- 80 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG---------------
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-CcccchHHhhCCCCCEEECCCCc-cCCChh---------------
Confidence 34555666666655555 4668999999999995 677888888899 9999999875 666543
Q ss_pred CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCcc
Q 043856 154 SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEE 233 (275)
Q Consensus 154 ~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~ 233 (275)
+..+++|+.|+++++. +..++. ... ++|+.|++++| +++.++ .+..+++|+.|++++| .++.
T Consensus 81 ------l~~l~~L~~L~L~~N~-l~~l~~-------~~~-~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N-~i~~ 142 (263)
T 1xeu_A 81 ------LKDLTKLEELSVNRNR-LKNLNG-------IPS-ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNN-KLKS 142 (263)
T ss_dssp ------GTTCSSCCEEECCSSC-CSCCTT-------CCC-SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTS-CCCB
T ss_pred ------hccCCCCCEEECCCCc-cCCcCc-------ccc-CcccEEEccCC-ccCCCh-hhcCcccccEEECCCC-cCCC
Confidence 3378999999999864 444442 113 89999999999 788886 5889999999999987 4666
Q ss_pred CCccccccCCCCCcccceecc---ccccchhhcCCCCccEEEecC
Q 043856 234 LPIPEDRRTTDIPRLSSLRIG---LKVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 234 l~~~~~~~~~~l~~L~~L~l~---l~~lp~~l~~L~~L~~L~l~~ 275 (275)
++ .+..+++|++|+++ ++.+ ..+..+++|+.|++++
T Consensus 143 ~~-----~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 143 IV-----MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CG-----GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEE
T ss_pred Ch-----HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCC
Confidence 54 36679999999997 6666 5788999999999863
No 94
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.35 E-value=9.5e-12 Score=118.23 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=24.4
Q ss_pred cCCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 241 RTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 241 ~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
.+..+++|++|+++ ++.+|. .+..+++|++|++++
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~ 513 (680)
T 1ziw_A 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCC
Confidence 45667778888875 666654 467788888887763
No 95
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.31 E-value=4.6e-12 Score=118.77 Aligned_cols=142 Identities=20% Similarity=0.272 Sum_probs=109.0
Q ss_pred HHHHHHhcCCCCCCCeEEecccCCcccc-cccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCcc
Q 043856 64 DEQLLEALQPPLNVEKLWIIFYGGNILP-KWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 64 ~~~l~~~l~~l~~L~~L~l~~~~~~~lp-~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
...||..+ ++++++|+++++....+| ..+.++++|++|+|++| .+..++. +..++ |++|+|+++. ++.+|..
T Consensus 43 l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~ 118 (635)
T 4g8a_A 43 FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALG 118 (635)
T ss_dssp CSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGG
T ss_pred cCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHH
Confidence 34577766 358999999999888765 57899999999999995 5666653 78899 9999999875 8888754
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc--CccccCCC
Q 043856 140 FLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA--LPDYLLQT 217 (275)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l 217 (275)
. +.++++|+.|+++++. +..++. ..+..+++|+.|++++| .++. +|..++.+
T Consensus 119 ~-------------------f~~L~~L~~L~Ls~N~-l~~l~~-----~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l 172 (635)
T 4g8a_A 119 A-------------------FSGLSSLQKLVAVETN-LASLEN-----FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNL 172 (635)
T ss_dssp G-------------------GTTCTTCCEEECTTSC-CCCSTT-----CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGC
T ss_pred H-------------------hcCCCCCCEEECCCCc-CCCCCh-----hhhhcCcccCeeccccC-ccccCCCchhhccc
Confidence 2 3478999999998863 444442 12347899999999998 5664 57778889
Q ss_pred CCccEEEEecCCCCccCCc
Q 043856 218 TALQELSIYSCENLEELPI 236 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~ 236 (275)
++|++|++++| .+..++.
T Consensus 173 ~~L~~L~L~~N-~l~~~~~ 190 (635)
T 4g8a_A 173 TNLEHLDLSSN-KIQSIYC 190 (635)
T ss_dssp TTCCEEECCSS-CCCEECG
T ss_pred hhhhhhcccCc-ccccccc
Confidence 99999999987 4444443
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.30 E-value=1.5e-13 Score=122.06 Aligned_cols=199 Identities=16% Similarity=0.117 Sum_probs=117.5
Q ss_pred HHHHHHhcCCCCCCCeEEecccCCcc----ccccc-------CCCCCCcEEeeecCCCCC----cCC-CCCCcc-cceee
Q 043856 64 DEQLLEALQPPLNVEKLWIIFYGGNI----LPKWL-------TSLTNLRDLKLVFCENCE----HLP-PLGKLP-LEKLE 126 (275)
Q Consensus 64 ~~~l~~~l~~l~~L~~L~l~~~~~~~----lp~~l-------~~l~~L~~L~L~~c~~~~----~lp-~l~~L~-L~~L~ 126 (275)
...+...+..+++|++|++++|.... +|..+ ..+++|++|++++|.... .+| .+..++ |+.|+
T Consensus 49 ~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~ 128 (386)
T 2ca6_A 49 ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128 (386)
T ss_dssp HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEE
Confidence 34466667777888888887763321 34433 577788888887754322 122 244556 77777
Q ss_pred ccccccccccCcc-ccc----c---------ccccCCCCCCCCCC--------CCCCCCCcccEeeccccccccc-----
Q 043856 127 LRDLKSVKRVGNE-FLG----I---------EEISEDDPSSSSSS--------SSVTAFPKLKSLEIKELDLLEE----- 179 (275)
Q Consensus 127 l~~~~~l~~l~~~-~~~----~---------~~~~~~~~~~~~~~--------~~l~~l~~L~~L~l~~~~~l~~----- 179 (275)
+++|. +...+.. +.. . ..+..+.++..... ..+..+++|+.|++.++. +..
T Consensus 129 L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~ 206 (386)
T 2ca6_A 129 LHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEH 206 (386)
T ss_dssp CCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHH
T ss_pred CcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHH
Confidence 77664 3211110 000 0 11111111111100 123457788888888764 221
Q ss_pred cccccccccccCCCCcccEEeEccCccc-----CcCccccCCCCCccEEEEecCCCCccC-----CccccccC--CCCCc
Q 043856 180 WNYRITRKENISIMPRLSSLKVGSCNKL-----KALPDYLLQTTALQELSIYSCENLEEL-----PIPEDRRT--TDIPR 247 (275)
Q Consensus 180 l~~~i~~~~~~~~l~~L~~L~l~~c~~l-----~~lp~~l~~l~~L~~L~l~~c~~l~~l-----~~~~~~~~--~~l~~ 247 (275)
+.. ..+..+++|+.|++++| .+ ..+|..+..+++|++|++++|. +... +. .+ ..+++
T Consensus 207 l~~-----~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~----~l~~~~~~~ 275 (386)
T 2ca6_A 207 LLL-----EGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVD----AFSKLENIG 275 (386)
T ss_dssp HHH-----TTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHH----HHHTCSSCC
T ss_pred HHH-----HHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHH----HHhhccCCC
Confidence 111 02226889999999988 46 4577778889999999998885 3322 22 22 34889
Q ss_pred ccceecc---ccc-----cchhh-cCCCCccEEEecC
Q 043856 248 LSSLRIG---LKV-----LPDYL-LRTTMLQELSISE 275 (275)
Q Consensus 248 L~~L~l~---l~~-----lp~~l-~~L~~L~~L~l~~ 275 (275)
|++|+++ ++. +|..+ .++++|+.|++++
T Consensus 276 L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 276 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp CCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred eEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 9999996 554 88777 6789999999864
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.28 E-value=3.2e-11 Score=105.85 Aligned_cols=177 Identities=18% Similarity=0.184 Sum_probs=97.5
Q ss_pred HHHHHH-hcCCCCCCCeEEecccCCcc-ccc-ccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccC
Q 043856 64 DEQLLE-ALQPPLNVEKLWIIFYGGNI-LPK-WLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVG 137 (275)
Q Consensus 64 ~~~l~~-~l~~l~~L~~L~l~~~~~~~-lp~-~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~ 137 (275)
+..+|. ++..+++|++|++++|.... +|. .+.++++|+.+.+.+++.+..++. +..++ |++|+++++. +..++
T Consensus 42 i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~ 120 (350)
T 4ay9_X 42 LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLP 120 (350)
T ss_dssp CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCC
T ss_pred CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccCC
Confidence 345664 57889999999999988655 553 456888888776666677776653 67788 8888888664 55554
Q ss_pred ccc-cccccccC--------------------------CCCCCC---CCCCCCCCCCcccEeeccccccccccccccccc
Q 043856 138 NEF-LGIEEISE--------------------------DDPSSS---SSSSSVTAFPKLKSLEIKELDLLEEWNYRITRK 187 (275)
Q Consensus 138 ~~~-~~~~~~~~--------------------------~~~~~~---~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~ 187 (275)
... ........ +.++.. .........++|+.|.+.++..++.++.
T Consensus 121 ~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~----- 195 (350)
T 4ay9_X 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN----- 195 (350)
T ss_dssp CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCT-----
T ss_pred chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCH-----
Confidence 321 10000000 000000 0001111223444444444444444332
Q ss_pred cccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 188 ENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 188 ~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
..+..+++|+.|+++++ +++.+|.. .+.+|+.|.+.++..++.+|. +..+++|+.+++.
T Consensus 196 ~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-----l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 196 DVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPT-----LEKLVALMEASLT 254 (350)
T ss_dssp TTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCC-----TTTCCSCCEEECS
T ss_pred HHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCC-----chhCcChhhCcCC
Confidence 12234566666666666 56666653 255666666666666666664 4456666666653
No 98
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.28 E-value=3e-11 Score=113.20 Aligned_cols=194 Identities=18% Similarity=0.153 Sum_probs=118.9
Q ss_pred CCCCCCCeEEecccCCcc---cccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCcc-ccccccc
Q 043856 72 QPPLNVEKLWIIFYGGNI---LPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNE-FLGIEEI 146 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~-~~~~~~~ 146 (275)
..+++|+.|.++.+.... .|.....+.+|+++++..+......+.+..++ |+.+++..+......+.. +.....+
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 346677777777665432 33444466667777666643333333344455 666666544432222211 1111100
Q ss_pred cCCCCC----CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCCcc
Q 043856 147 SEDDPS----SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTALQ 221 (275)
Q Consensus 147 ~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~ 221 (275)
....++ ..........+++|+.|++.++.....+.. ..+..+++|+.|++++| +++.+ |..+.++++|+
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~-----~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-----SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCC
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCc-----hhhhhccccCEEECCCC-ccCCcChHHHcCCCCCC
Confidence 000000 001122345678999999988765544332 13347899999999999 68775 56788999999
Q ss_pred EEEEecCCCCccCCccccccCCCCCcccceecc---cccc-chhhcCC-CCccEEEecC
Q 043856 222 ELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVL-PDYLLRT-TMLQELSISE 275 (275)
Q Consensus 222 ~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~l-p~~l~~L-~~L~~L~l~~ 275 (275)
+|++++| .+..++.. .+..+++|++|+++ +..+ |..+.++ ++|+.|++++
T Consensus 522 ~L~Ls~N-~l~~l~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 522 VLNMSHN-NFFSLDTF---PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp EEECTTS-CCCBCCCG---GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred EEECCCC-cCCCCChh---HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 9999987 56666552 56779999999996 6655 5577777 6899999874
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.28 E-value=2.2e-11 Score=100.58 Aligned_cols=134 Identities=21% Similarity=0.247 Sum_probs=97.1
Q ss_pred HHHHHhcCCCCCCCeEEecccCCccc-ccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEF 140 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~ 140 (275)
..+|..+. ++|++|+++++....+ |..+..+++|++|++++| .+..+|. +..++ |+.|+++++. ++.++...
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~ 107 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAV 107 (229)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCc-CCccChhH
Confidence 34555443 7899999998887774 677888999999999984 4566664 56788 9999998764 66665431
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCC
Q 043856 141 LGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTA 219 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~ 219 (275)
+..+++|+.|+++++. +..++..+ ..+++|+.|+++++ +++.+|. .+..+++
T Consensus 108 -------------------~~~l~~L~~L~Ls~N~-l~~lp~~~------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 160 (229)
T 3e6j_A 108 -------------------FDRLVHLKELFMCCNK-LTELPRGI------ERLTHLTHLALDQN-QLKSIPHGAFDRLSS 160 (229)
T ss_dssp -------------------TTTCTTCCEEECCSSC-CCSCCTTG------GGCTTCSEEECCSS-CCCCCCTTTTTTCTT
T ss_pred -------------------hCcchhhCeEeccCCc-ccccCccc------ccCCCCCEEECCCC-cCCccCHHHHhCCCC
Confidence 3467888888888653 54554322 26788889988887 6777764 4677888
Q ss_pred ccEEEEecCC
Q 043856 220 LQELSIYSCE 229 (275)
Q Consensus 220 L~~L~l~~c~ 229 (275)
|+.|++.+++
T Consensus 161 L~~L~l~~N~ 170 (229)
T 3e6j_A 161 LTHAYLFGNP 170 (229)
T ss_dssp CCEEECTTSC
T ss_pred CCEEEeeCCC
Confidence 8888888875
No 100
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=3.8e-14 Score=132.36 Aligned_cols=175 Identities=15% Similarity=0.116 Sum_probs=109.5
Q ss_pred hhHHHHHHhcCCCCCCCeEEecccC-------------Ccc-cccccCCCCCCcEEe-eecCCCCCcCCC-------CCC
Q 043856 62 EKDEQLLEALQPPLNVEKLWIIFYG-------------GNI-LPKWLTSLTNLRDLK-LVFCENCEHLPP-------LGK 119 (275)
Q Consensus 62 ~~~~~l~~~l~~l~~L~~L~l~~~~-------------~~~-lp~~l~~l~~L~~L~-L~~c~~~~~lp~-------l~~ 119 (275)
+.+..+|+.++.+++|+.|+++++. ... .|..++.+++|+.|+ ++. +.+..++. +..
T Consensus 359 n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~~L~~l~l~~n~i~~ 437 (567)
T 1dce_A 359 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLDDLRSKFLLENSVLK 437 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccchhhhhhhhcccccc
Confidence 3445666666666666666665442 111 344445555555555 222 21111111 122
Q ss_pred cc---cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcc
Q 043856 120 LP---LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRL 196 (275)
Q Consensus 120 L~---L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L 196 (275)
++ |+.|+++++. ++.+|. +..+++|+.|+++++. +..+|..+ ..+++|
T Consensus 438 l~~~~L~~L~Ls~n~-l~~lp~---------------------~~~l~~L~~L~Ls~N~-l~~lp~~~------~~l~~L 488 (567)
T 1dce_A 438 MEYADVRVLHLAHKD-LTVLCH---------------------LEQLLLVTHLDLSHNR-LRALPPAL------AALRCL 488 (567)
T ss_dssp HHHTTCSEEECTTSC-CSSCCC---------------------GGGGTTCCEEECCSSC-CCCCCGGG------GGCTTC
T ss_pred cCccCceEEEecCCC-CCCCcC---------------------ccccccCcEeecCccc-ccccchhh------hcCCCC
Confidence 22 5666666553 555542 4467889999988753 54555433 268899
Q ss_pred cEEeEccCcccCcCccccCCCCCccEEEEecCCCCccC--CccccccCCCCCcccceecc---ccccchh----hcCCCC
Q 043856 197 SSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLEEL--PIPEDRRTTDIPRLSSLRIG---LKVLPDY----LLRTTM 267 (275)
Q Consensus 197 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l--~~~~~~~~~~l~~L~~L~l~---l~~lp~~----l~~L~~ 267 (275)
+.|++++| +++.+| .++.+++|+.|++++| .+..+ |. .+..+++|+.|+++ +..+|.. +..+++
T Consensus 489 ~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~----~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 489 EVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQ----PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp CEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTG----GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred CEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcH----HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 99999888 688888 7888999999999887 55555 55 57778899999986 6666543 244788
Q ss_pred ccEEEe
Q 043856 268 LQELSI 273 (275)
Q Consensus 268 L~~L~l 273 (275)
|+.|++
T Consensus 562 L~~L~l 567 (567)
T 1dce_A 562 VSSILT 567 (567)
T ss_dssp CSEEEC
T ss_pred cCccCC
Confidence 888864
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.27 E-value=7.4e-11 Score=97.35 Aligned_cols=145 Identities=18% Similarity=0.139 Sum_probs=110.9
Q ss_pred CCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcC-C-CCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 76 NVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHL-P-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~l-p-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
..+.++.+++....+|..+. ++|++|++++|. +..+ | .+..++ |+.|+++++. ++.++...
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~------------ 83 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGV------------ 83 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT------------
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCC-CCCcChhh------------
Confidence 35567777777666887654 899999999954 4444 3 377888 9999999875 67666431
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecCCCCc
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSCENLE 232 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 232 (275)
+..+++|+.|+++++ .+..++. ..+..+++|+.|+++++ +++.+|..+..+++|+.|++++| .+.
T Consensus 84 -------~~~l~~L~~L~Ls~N-~l~~l~~-----~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~ 148 (229)
T 3e6j_A 84 -------FDSLTQLTVLDLGTN-QLTVLPS-----AVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLK 148 (229)
T ss_dssp -------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCC
T ss_pred -------cccCCCcCEEECCCC-cCCccCh-----hHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCC
Confidence 347899999999886 4555442 12336899999999998 79999999999999999999987 566
Q ss_pred cCCccccccCCCCCcccceecc
Q 043856 233 ELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 233 ~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.++.. .+..+++|+.|+++
T Consensus 149 ~~~~~---~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 149 SIPHG---AFDRLSSLTHAYLF 167 (229)
T ss_dssp CCCTT---TTTTCTTCCEEECT
T ss_pred ccCHH---HHhCCCCCCEEEee
Confidence 66652 46778999999985
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=4.4e-13 Score=119.10 Aligned_cols=204 Identities=16% Similarity=0.131 Sum_probs=125.4
Q ss_pred hHHHHHHhcCCCCCCCeEEecccCCcc-----cccccCCCCCCcEEeeecCC--CCC-cCCC--------CCCcc-ccee
Q 043856 63 KDEQLLEALQPPLNVEKLWIIFYGGNI-----LPKWLTSLTNLRDLKLVFCE--NCE-HLPP--------LGKLP-LEKL 125 (275)
Q Consensus 63 ~~~~l~~~l~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~c~--~~~-~lp~--------l~~L~-L~~L 125 (275)
....++..+..+++|++|++++|.... ++..+.++++|++|++++|. .+. .+|. +..++ |++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 445677888889999999999987544 34457789999999999962 222 2332 35678 9999
Q ss_pred eccccccccc-----cCccccccccccCCCCCCCCCC--------CCCCCC---------CcccEeeccccccc-ccccc
Q 043856 126 ELRDLKSVKR-----VGNEFLGIEEISEDDPSSSSSS--------SSVTAF---------PKLKSLEIKELDLL-EEWNY 182 (275)
Q Consensus 126 ~l~~~~~l~~-----l~~~~~~~~~~~~~~~~~~~~~--------~~l~~l---------~~L~~L~l~~~~~l-~~l~~ 182 (275)
+++++. +.. ++..+.....+..+.++..... ..+..+ ++|+.|+++++.-- ..++.
T Consensus 100 ~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 100 RLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp ECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred ECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 999875 433 3322222222222222111110 001112 67777777765421 11110
Q ss_pred ccccccccCCCCcccEEeEccCcccC------cCccccCCCCCccEEEEecCCCC----ccCCccccccCCCCCccccee
Q 043856 183 RITRKENISIMPRLSSLKVGSCNKLK------ALPDYLLQTTALQELSIYSCENL----EELPIPEDRRTTDIPRLSSLR 252 (275)
Q Consensus 183 ~i~~~~~~~~l~~L~~L~l~~c~~l~------~lp~~l~~l~~L~~L~l~~c~~l----~~l~~~~~~~~~~l~~L~~L~ 252 (275)
+. ..+..+++|+.|++++| .++ -+|..+..+++|++|++++|..- ..++. .+..+++|++|+
T Consensus 179 -l~--~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~----~l~~~~~L~~L~ 250 (386)
T 2ca6_A 179 -WA--KTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRELG 250 (386)
T ss_dssp -HH--HHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH----HGGGCTTCCEEE
T ss_pred -HH--HHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH----HHccCCCcCEEE
Confidence 00 01125788999999988 566 23446778899999999888521 34444 456788999999
Q ss_pred cc---cc-----ccchhhc--CCCCccEEEecC
Q 043856 253 IG---LK-----VLPDYLL--RTTMLQELSISE 275 (275)
Q Consensus 253 l~---l~-----~lp~~l~--~L~~L~~L~l~~ 275 (275)
++ ++ .+|.++. .+++|+.|++++
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~ 283 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY 283 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcC
Confidence 96 33 2566773 489999999864
No 103
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=2.7e-14 Score=133.30 Aligned_cols=174 Identities=18% Similarity=0.188 Sum_probs=125.6
Q ss_pred CCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCC-------------CCCcCC-CCCCcc-cceee-ccccccccc
Q 043856 72 QPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCE-------------NCEHLP-PLGKLP-LEKLE-LRDLKSVKR 135 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~-------------~~~~lp-~l~~L~-L~~L~-l~~~~~l~~ 135 (275)
..+++|+.|+++++....+|..++.+++|+.|++.+|. .....| .++.++ |+.|+ ++ ++.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~-~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-AAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh-hcccch
Confidence 56789999999998877799999999999999986542 122222 144556 77766 33 222333
Q ss_pred cCccccccccccCCCCCCCCCCCCCC--CCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc
Q 043856 136 VGNEFLGIEEISEDDPSSSSSSSSVT--AFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY 213 (275)
Q Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~ 213 (275)
++.-+..... +. ....|+.|+++++ .+..++. +..+++|+.|++++| +++.+|..
T Consensus 425 L~~l~l~~n~--------------i~~l~~~~L~~L~Ls~n-~l~~lp~-------~~~l~~L~~L~Ls~N-~l~~lp~~ 481 (567)
T 1dce_A 425 LRSKFLLENS--------------VLKMEYADVRVLHLAHK-DLTVLCH-------LEQLLLVTHLDLSHN-RLRALPPA 481 (567)
T ss_dssp HHHHHHHHHH--------------HHHHHHTTCSEEECTTS-CCSSCCC-------GGGGTTCCEEECCSS-CCCCCCGG
T ss_pred hhhhhhhccc--------------ccccCccCceEEEecCC-CCCCCcC-------ccccccCcEeecCcc-cccccchh
Confidence 3211110000 11 1236889999876 4555542 236899999999998 78899999
Q ss_pred cCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---cccc--chhhcCCCCccEEEecC
Q 043856 214 LLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVL--PDYLLRTTMLQELSISE 275 (275)
Q Consensus 214 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~l--p~~l~~L~~L~~L~l~~ 275 (275)
++.+++|+.|++++| .++.+| .+..+++|+.|+++ ++.+ |..++.+++|+.|++++
T Consensus 482 ~~~l~~L~~L~Ls~N-~l~~lp-----~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 482 LAALRCLEVLQASDN-ALENVD-----GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp GGGCTTCCEEECCSS-CCCCCG-----GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred hhcCCCCCEEECCCC-CCCCCc-----ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 999999999999987 566666 37789999999996 7777 89999999999999974
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.23 E-value=1.2e-10 Score=95.43 Aligned_cols=143 Identities=17% Similarity=0.222 Sum_probs=100.4
Q ss_pred CCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC---CCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 77 VEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP---LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 77 L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~---l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
-+.++++++....+|..+. ..+++|++++| .+..++. +..++ |++|+++++. ++.++...
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~------------ 76 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGA------------ 76 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTT------------
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHH------------
Confidence 4578888877777887653 45689999984 4555432 66788 9999998765 66665421
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCC
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENL 231 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l 231 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.+ |..+..+++|++|++++| .+
T Consensus 77 -------~~~l~~L~~L~Ls~N~-l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l 141 (220)
T 2v70_A 77 -------FEGASGVNEILLTSNR-LENVQH-----KMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN-QI 141 (220)
T ss_dssp -------TTTCTTCCEEECCSSC-CCCCCG-----GGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS-CC
T ss_pred -------hCCCCCCCEEECCCCc-cCccCH-----hHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCC-cC
Confidence 4478889999988754 333332 12336888999999888 57765 567788899999998887 45
Q ss_pred ccC-CccccccCCCCCcccceecc
Q 043856 232 EEL-PIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 232 ~~l-~~~~~~~~~~l~~L~~L~l~ 254 (275)
..+ |. .+..+++|++|+++
T Consensus 142 ~~~~~~----~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 142 TTVAPG----AFDTLHSLSTLNLL 161 (220)
T ss_dssp CCBCTT----TTTTCTTCCEEECC
T ss_pred CEECHH----HhcCCCCCCEEEec
Confidence 555 43 56678888888885
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=7.4e-12 Score=96.13 Aligned_cols=127 Identities=24% Similarity=0.290 Sum_probs=83.9
Q ss_pred CCCCCCCeEEecccCCc--ccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccc-cCcccccccccc
Q 043856 72 QPPLNVEKLWIIFYGGN--ILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKR-VGNEFLGIEEIS 147 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~--~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~-l~~~~~~~~~~~ 147 (275)
...++|++|++++|... .+|..+..+++|++|++++| .+..++.++.++ |++|+++++. +.. +|..
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-------- 83 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNR-VSGGLEVL-------- 83 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSC-CCSCTHHH--------
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCc-ccchHHHH--------
Confidence 34578999999999877 58888889999999999985 455556677788 8888888765 443 3322
Q ss_pred CCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc----ccCCCCCccEE
Q 043856 148 EDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD----YLLQTTALQEL 223 (275)
Q Consensus 148 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~L 223 (275)
...+++|+.|+++++. +..++. ...+..+++|+.|++++| .++.+|. .+..+++|+.|
T Consensus 84 ------------~~~l~~L~~L~ls~N~-i~~~~~----~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 84 ------------AEKCPNLTHLNLSGNK-IKDLST----IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp ------------HHHCTTCCEEECTTSC-CCSHHH----HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEE
T ss_pred ------------hhhCCCCCEEECCCCc-CCChHH----HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccc
Confidence 2246677777776653 333220 011225677777777776 4666554 45566677766
Q ss_pred EEe
Q 043856 224 SIY 226 (275)
Q Consensus 224 ~l~ 226 (275)
+++
T Consensus 146 ~l~ 148 (149)
T 2je0_A 146 DGY 148 (149)
T ss_dssp TTB
T ss_pred cCC
Confidence 543
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.21 E-value=8.7e-11 Score=103.50 Aligned_cols=131 Identities=20% Similarity=0.264 Sum_probs=69.6
Q ss_pred CCCeEEecccCCcccc-cccC-CCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccccccCCC
Q 043856 76 NVEKLWIIFYGGNILP-KWLT-SLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDD 150 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp-~~l~-~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 150 (275)
.++.|+++++....+| .++. .+++|++|+|++| .+..++ .+..++ |++|+++++. ++.++...
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---------- 107 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFL---------- 107 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT----------
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHH----------
Confidence 4666666666655533 3344 6666666666663 344443 255566 6666666553 55444321
Q ss_pred CCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcccc----CCCCCccEEEEe
Q 043856 151 PSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYL----LQTTALQELSIY 226 (275)
Q Consensus 151 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l----~~l~~L~~L~l~ 226 (275)
+..+++|+.|+++++. +..+. ...+..+++|+.|++++| +++.+|..+ ..+++|+.|+++
T Consensus 108 ---------~~~l~~L~~L~L~~N~-i~~~~-----~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 108 ---------FSDLQALEVLLLYNNH-IVVVD-----RNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp ---------TTTCTTCCEEECCSSC-CCEEC-----TTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECC
T ss_pred ---------hCCCcCCCEEECCCCc-ccEEC-----HHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECC
Confidence 2355666666666543 22221 112224666666666665 566665543 346666666666
Q ss_pred cCCCCccCC
Q 043856 227 SCENLEELP 235 (275)
Q Consensus 227 ~c~~l~~l~ 235 (275)
+| .+..++
T Consensus 172 ~N-~l~~l~ 179 (361)
T 2xot_A 172 SN-KLKKLP 179 (361)
T ss_dssp SS-CCCCCC
T ss_pred CC-CCCccC
Confidence 55 344444
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.21 E-value=7.3e-11 Score=96.82 Aligned_cols=134 Identities=15% Similarity=0.207 Sum_probs=96.1
Q ss_pred HHHHhcCCCCCCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcC-C-CCCCcc-cceeeccccccccccCcccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHL-P-PLGKLP-LEKLELRDLKSVKRVGNEFL 141 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~l-p-~l~~L~-L~~L~l~~~~~l~~l~~~~~ 141 (275)
.+|..+. ++|+.|+++++....+|. .+..+++|++|++++| .+..+ | .+..++ |++|+++++. ++.+|...
T Consensus 25 ~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~- 99 (220)
T 2v9t_B 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK-ITELPKSL- 99 (220)
T ss_dssp SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTT-
T ss_pred cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhH-
Confidence 3455443 689999999888777554 6778899999999985 44444 3 477788 9999998764 76766542
Q ss_pred ccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCc
Q 043856 142 GIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTAL 220 (275)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L 220 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.++. .+..+++|
T Consensus 100 ------------------f~~l~~L~~L~L~~N~-l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 154 (220)
T 2v9t_B 100 ------------------FEGLFSLQLLLLNANK-INCLRV-----DAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAI 154 (220)
T ss_dssp ------------------TTTCTTCCEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred ------------------ccCCCCCCEEECCCCC-CCEeCH-----HHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCC
Confidence 3468889999988753 433321 12336889999999888 6777765 47778899
Q ss_pred cEEEEecCC
Q 043856 221 QELSIYSCE 229 (275)
Q Consensus 221 ~~L~l~~c~ 229 (275)
++|++++++
T Consensus 155 ~~L~L~~N~ 163 (220)
T 2v9t_B 155 QTMHLAQNP 163 (220)
T ss_dssp CEEECCSSC
T ss_pred CEEEeCCCC
Confidence 999988875
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.20 E-value=2.3e-10 Score=93.82 Aligned_cols=143 Identities=15% Similarity=0.224 Sum_probs=99.8
Q ss_pred CeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccccccCCCCCCC
Q 043856 78 EKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSS 154 (275)
Q Consensus 78 ~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 154 (275)
+.++.+++....+|..+. ++|+.|++++| .+..++ .+..++ |+.|+++++. +..++..
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~--------------- 74 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPD--------------- 74 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECTT---------------
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHH---------------
Confidence 566777776666787654 68999999984 555555 367788 9999998775 5555322
Q ss_pred CCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCcc
Q 043856 155 SSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEE 233 (275)
Q Consensus 155 ~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~ 233 (275)
.+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.+ |..+..+++|+.|++++| .+..
T Consensus 75 ----~~~~l~~L~~L~Ls~N~-l~~l~~-----~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 142 (220)
T 2v9t_B 75 ----AFQGLRSLNSLVLYGNK-ITELPK-----SLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQT 142 (220)
T ss_dssp ----TTTTCSSCCEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSC
T ss_pred ----HhhCCcCCCEEECCCCc-CCccCH-----hHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCE
Confidence 14478889999888753 444442 12236888999999888 67775 456778889999998887 4555
Q ss_pred CCccccccCCCCCcccceecc
Q 043856 234 LPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 234 l~~~~~~~~~~l~~L~~L~l~ 254 (275)
++.. .+..+++|++|+++
T Consensus 143 ~~~~---~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 143 IAKG---TFSPLRAIQTMHLA 160 (220)
T ss_dssp CCTT---TTTTCTTCCEEECC
T ss_pred ECHH---HHhCCCCCCEEEeC
Confidence 5542 46678888888885
No 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=2.4e-11 Score=96.06 Aligned_cols=132 Identities=14% Similarity=0.193 Sum_probs=87.5
Q ss_pred cCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCC
Q 043856 71 LQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISED 149 (275)
Q Consensus 71 l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 149 (275)
+..+.+|+.|++++|....+|......++|++|++++| .+..++.++.++ |++|+++++. +..+|..+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~--------- 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGL--------- 83 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECSCH---------
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCc-ccccCcch---------
Confidence 45677899999998877667543333348999999885 455556777788 8888888764 66665431
Q ss_pred CCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc----cCCCCCccEEEE
Q 043856 150 DPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY----LLQTTALQELSI 225 (275)
Q Consensus 150 ~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~----l~~l~~L~~L~l 225 (275)
+..+++|+.|+++++. +..++. ......+++|+.|++++| .+..+|.. +..+++|+.|++
T Consensus 84 ----------~~~l~~L~~L~L~~N~-i~~~~~----~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 84 ----------DQALPDLTELILTNNS-LVELGD----LDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp ----------HHHCTTCCEEECCSCC-CCCGGG----GGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETT
T ss_pred ----------hhcCCCCCEEECCCCc-CCcchh----hHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCC
Confidence 1357778888877653 333332 011225777888888777 46666664 667777777777
Q ss_pred ecCC
Q 043856 226 YSCE 229 (275)
Q Consensus 226 ~~c~ 229 (275)
++++
T Consensus 148 ~~n~ 151 (176)
T 1a9n_A 148 QKVK 151 (176)
T ss_dssp EECC
T ss_pred CcCC
Confidence 7664
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.17 E-value=3e-11 Score=92.72 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=71.3
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-CccccCCCCCccEEEEecCCCCccCC--c
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQTTALQELSIYSCENLEELP--I 236 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~~l~~l~--~ 236 (275)
+..+++|+.|+++++. +..+. .+..+++|+.|++++| .++. +|..+..+++|++|++++|. +..++ .
T Consensus 38 ~~~l~~L~~L~l~~n~-l~~~~-------~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~ 107 (149)
T 2je0_A 38 TDEFEELEFLSTINVG-LTSIA-------NLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIE 107 (149)
T ss_dssp CTTCTTCCEEECTTSC-CCCCT-------TCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHG
T ss_pred HhhcCCCcEEECcCCC-CCCch-------hhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCCc-CCChHHHH
Confidence 3467788888887653 33331 2236788888888887 5666 77666668888888888774 44443 3
Q ss_pred cccccCCCCCcccceecc---ccccch----hhcCCCCccEEEecC
Q 043856 237 PEDRRTTDIPRLSSLRIG---LKVLPD----YLLRTTMLQELSISE 275 (275)
Q Consensus 237 ~~~~~~~~l~~L~~L~l~---l~~lp~----~l~~L~~L~~L~l~~ 275 (275)
.+..+++|++|+++ +..+|. .+..+++|+.|++++
T Consensus 108 ----~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 108 ----PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ----GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ----HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 45678888888885 666664 678899999998874
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.17 E-value=5.9e-10 Score=90.24 Aligned_cols=143 Identities=20% Similarity=0.269 Sum_probs=104.4
Q ss_pred CeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccccccccccCCCCCCC
Q 043856 78 EKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSS 154 (275)
Q Consensus 78 ~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 154 (275)
+.++.+++....+|..+ .++|++|++++| .+..++. +..++ |++|+++++. ++.++...
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-------------- 71 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGV-------------- 71 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTT--------------
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCc-cCccChhh--------------
Confidence 45666666666677554 568999999995 4555554 67888 9999999764 66665431
Q ss_pred CCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCCCCcc
Q 043856 155 SSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCENLEE 233 (275)
Q Consensus 155 ~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~ 233 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.+|.. +..+++|++|++++| .+..
T Consensus 72 -----~~~l~~L~~L~Ls~n~-l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~ 138 (208)
T 2o6s_A 72 -----FNKLTSLTYLNLSTNQ-LQSLPN-----GVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKS 138 (208)
T ss_dssp -----TTTCTTCCEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSC
T ss_pred -----cCCCCCcCEEECCCCc-CCccCH-----hHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccce
Confidence 3478899999998763 444432 12336899999999998 68887765 678999999999987 5556
Q ss_pred CCccccccCCCCCcccceecc
Q 043856 234 LPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 234 l~~~~~~~~~~l~~L~~L~l~ 254 (275)
++.. .+..+++|++|+++
T Consensus 139 ~~~~---~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 139 VPDG---VFDRLTSLQYIWLH 156 (208)
T ss_dssp CCTT---TTTTCTTCCEEECC
T ss_pred eCHH---HhccCCCccEEEec
Confidence 6652 46678999999986
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=4.7e-11 Score=93.50 Aligned_cols=135 Identities=25% Similarity=0.386 Sum_probs=76.1
Q ss_pred CCCCCcEEeeecCCCC-CcCCCCCC-cc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeecc
Q 043856 96 SLTNLRDLKLVFCENC-EHLPPLGK-LP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIK 172 (275)
Q Consensus 96 ~l~~L~~L~L~~c~~~-~~lp~l~~-L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 172 (275)
..++|++|++++|... ..+|..-. ++ |+.|++++|. ++.+ .. +..+++|+.|+++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~--------------------~~~l~~L~~L~Ls 79 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SN--------------------LPKLPKLKKLELS 79 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SS--------------------CCCCSSCCEEEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hh--------------------hccCCCCCEEECc
Confidence 4577888888885432 25555432 34 7777777664 4444 11 4467777777776
Q ss_pred ccccccccccccccccccCCCCcccEEeEccCcccCcCc--cccCCCCCccEEEEecCCCCccCCccccccCCCCCcccc
Q 043856 173 ELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP--DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSS 250 (275)
Q Consensus 173 ~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~ 250 (275)
++.-...++.. ...+++|+.|++++| +++.+| ..+..+++|+.|++++|+ +..++......+..+++|++
T Consensus 80 ~N~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~ 151 (168)
T 2ell_A 80 ENRIFGGLDML------AEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTY 151 (168)
T ss_dssp SCCCCSCCCHH------HHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCE
T ss_pred CCcCchHHHHH------HhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcE
Confidence 65422112211 113677777777777 566665 566677777777777763 33333200013445677777
Q ss_pred eecc---ccccch
Q 043856 251 LRIG---LKVLPD 260 (275)
Q Consensus 251 L~l~---l~~lp~ 260 (275)
|+++ +..+|.
T Consensus 152 L~l~~n~~~~~~~ 164 (168)
T 2ell_A 152 LDGYDREDQEAPD 164 (168)
T ss_dssp ETTEETTSCBCCS
T ss_pred ecCCCCChhhccc
Confidence 7664 445553
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.14 E-value=4.9e-10 Score=91.84 Aligned_cols=134 Identities=12% Similarity=0.198 Sum_probs=101.0
Q ss_pred HHHHhcCCCCCCCeEEecccCCccc-c-cccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNIL-P-KWLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEF 140 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~l-p-~~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~ 140 (275)
.+|..+ ...+++|+++++....+ | ..+..+++|++|++++| .+..++ .+..++ |++|+++++. +..++...
T Consensus 25 ~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 100 (220)
T 2v70_A 25 KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR-LENVQHKM 100 (220)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGG
T ss_pred cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc-cCccCHhH
Confidence 456555 34678999999987775 3 34779999999999995 455555 378888 9999999875 66665432
Q ss_pred cccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCC
Q 043856 141 LGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTA 219 (275)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~ 219 (275)
+..+++|+.|+++++. +..+.. ..+..+++|+.|++++| +++.+ |..+..+++
T Consensus 101 -------------------~~~l~~L~~L~Ls~N~-l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 154 (220)
T 2v70_A 101 -------------------FKGLESLKTLMLRSNR-ITCVGN-----DSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHS 154 (220)
T ss_dssp -------------------GTTCSSCCEEECTTSC-CCCBCT-----TSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTT
T ss_pred -------------------hcCCcCCCEEECCCCc-CCeECH-----hHcCCCccCCEEECCCC-cCCEECHHHhcCCCC
Confidence 4478999999998764 433321 12337899999999998 68776 778889999
Q ss_pred ccEEEEecCC
Q 043856 220 LQELSIYSCE 229 (275)
Q Consensus 220 L~~L~l~~c~ 229 (275)
|++|++++|+
T Consensus 155 L~~L~L~~N~ 164 (220)
T 2v70_A 155 LSTLNLLANP 164 (220)
T ss_dssp CCEEECCSCC
T ss_pred CCEEEecCcC
Confidence 9999999875
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=2.2e-10 Score=100.90 Aligned_cols=167 Identities=19% Similarity=0.195 Sum_probs=117.4
Q ss_pred CCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC--CC-Ccc-cceeeccccccccccCccccccccccCCCCC
Q 043856 77 VEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LG-KLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 77 L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~-~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
-+.++.+++....+|..+. ..++.|+|++| .+..++. +. .++ |+.|+++++. +..++...
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~------------ 83 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEA------------ 83 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTT------------
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCccChhh------------
Confidence 3577887777766887653 46899999994 5555553 44 788 9999999775 76665431
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCC
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENL 231 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l 231 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|++++| ++..+ |..+..+++|+.|++++| .+
T Consensus 84 -------~~~l~~L~~L~Ls~N~-l~~~~~-----~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l 148 (361)
T 2xot_A 84 -------FVPVPNLRYLDLSSNH-LHTLDE-----FLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QI 148 (361)
T ss_dssp -------TTTCTTCCEEECCSSC-CCEECT-----TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred -------ccCCCCCCEEECCCCc-CCcCCH-----HHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cC
Confidence 4478899999998754 554442 12336899999999998 67775 567888999999999887 67
Q ss_pred ccCCccccccCCCCCcccceecc---ccccch-hhcCCCC--ccEEEec
Q 043856 232 EELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTM--LQELSIS 274 (275)
Q Consensus 232 ~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~--L~~L~l~ 274 (275)
..+|......+..+++|+.|+++ ++.+|. .+..+++ |+.|+++
T Consensus 149 ~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 149 SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred CeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence 77776321112568999999996 777773 5666665 3667765
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.08 E-value=4.3e-10 Score=104.81 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=106.8
Q ss_pred HHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc--cceeeccccccccccCccccccc
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP--LEKLELRDLKSVKRVGNEFLGIE 144 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~--L~~L~l~~~~~l~~l~~~~~~~~ 144 (275)
+|..+ +++|++|++++|....+| ..+++|++|++++| .+..+|. ++ |+.|+++++. ++.+|. ...
T Consensus 74 lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~---l~~~L~~L~Ls~N~-l~~lp~---~l~ 140 (571)
T 3cvr_A 74 LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE---LPASLKHLDVDNNQ-LTMLPE---LPA 140 (571)
T ss_dssp CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCT
T ss_pred cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch---hhcCCCEEECCCCc-CCCCCC---cCc
Confidence 45444 367888888888776677 45778888888874 4555665 33 7788887664 555664 111
Q ss_pred cccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCc----
Q 043856 145 EISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTAL---- 220 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L---- 220 (275)
.+..+.++.......-..+++|+.|+++++. +..++. + . ++|+.|++++| +++.+|. +.. +|
T Consensus 141 ~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~-L~~lp~-l-------~-~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~ 206 (571)
T 3cvr_A 141 LLEYINADNNQLTMLPELPTSLEVLSVRNNQ-LTFLPE-L-------P-ESLEALDVSTN-LLESLPA-VPV--RNHHSE 206 (571)
T ss_dssp TCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCCC-C-------C-TTCCEEECCSS-CCSSCCC-CC---------
T ss_pred cccEEeCCCCccCcCCCcCCCcCEEECCCCC-CCCcch-h-------h-CCCCEEECcCC-CCCchhh-HHH--hhhccc
Confidence 1222222111100001146799999998864 444442 1 2 89999999998 7889988 553 77
Q ss_pred ---cEEEEecCCCCccCCccccccCCCCCcccceecc---c-cccchhhcCC
Q 043856 221 ---QELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---L-KVLPDYLLRT 265 (275)
Q Consensus 221 ---~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l-~~lp~~l~~L 265 (275)
+.|++++| .+..+|. .+..+++|++|+++ + +.+|..++.+
T Consensus 207 ~~L~~L~Ls~N-~l~~lp~----~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 207 ETEIFFRCREN-RITHIPE----NILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -CCEEEECCSS-CCCCCCG----GGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ccceEEecCCC-cceecCH----HHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 99999987 6778887 56679999999996 3 3456555543
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.06 E-value=1.6e-11 Score=108.21 Aligned_cols=74 Identities=16% Similarity=0.109 Sum_probs=44.1
Q ss_pred cccEEeEccCcccCcCcc-----ccCCC-CCccEEEEecCCCCcc-----CCccccccCCC-CCcccceecc---cccc-
Q 043856 195 RLSSLKVGSCNKLKALPD-----YLLQT-TALQELSIYSCENLEE-----LPIPEDRRTTD-IPRLSSLRIG---LKVL- 258 (275)
Q Consensus 195 ~L~~L~l~~c~~l~~lp~-----~l~~l-~~L~~L~l~~c~~l~~-----l~~~~~~~~~~-l~~L~~L~l~---l~~l- 258 (275)
+|+.|++++| +++..+. .+..+ ++|++|++++|. +.. ++. .+.. .++|++|+++ ++..
T Consensus 168 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~----~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 168 NVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAY----IFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHH----HHHHSCTTCCEEECCSSCCCCCC
T ss_pred cccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHH----HHhcCCCCceEEECcCCCCCcHH
Confidence 7888888877 4654331 33444 478888887774 333 222 2222 3578888885 3332
Q ss_pred ----chhhcCCCCccEEEec
Q 043856 259 ----PDYLLRTTMLQELSIS 274 (275)
Q Consensus 259 ----p~~l~~L~~L~~L~l~ 274 (275)
+..+..+++|+.|+++
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEE
T ss_pred HHHHHHHHhcCCCccEEEec
Confidence 3345677888888875
No 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=1.3e-12 Score=105.40 Aligned_cols=123 Identities=20% Similarity=0.160 Sum_probs=86.6
Q ss_pred CCCeEEeccc--CCcccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccccccccCccccccccccCCCCC
Q 043856 76 NVEKLWIIFY--GGNILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPS 152 (275)
Q Consensus 76 ~L~~L~l~~~--~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 152 (275)
.|+...+.+. ....+|..+..+++|++|++++| .+..+|.+..++ |+.|+++++. +..+|..
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~~~~~l~~L~~L~l~~n~-l~~l~~~------------- 88 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKISSLSGMENLRILSLGRNL-IKKIENL------------- 88 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCCCHHHHTTCCEEEEEEEE-ECSCSSH-------------
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCccccccccCCCCCEEECCCCC-cccccch-------------
Confidence 3445555443 12225557888999999999985 556677777778 9999999775 6666643
Q ss_pred CCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc--ccCCCCCccEEEEecCC
Q 043856 153 SSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD--YLLQTTALQELSIYSCE 229 (275)
Q Consensus 153 ~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~c~ 229 (275)
...+++|+.|+++++ .+..++. + ..+++|+.|++++| +++.+|. .+..+++|++|++++|+
T Consensus 89 -------~~~~~~L~~L~L~~N-~l~~l~~-~------~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 89 -------DAVADTLEELWISYN-QIASLSG-I------EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp -------HHHHHHCSEEEEEEE-ECCCHHH-H------HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred -------hhcCCcCCEEECcCC-cCCcCCc-c------ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 335678999999875 3444432 1 15788999999888 6777654 67788999999998875
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.00 E-value=3e-10 Score=109.00 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=76.2
Q ss_pred CCCCeEEecccCCcccccccCCCCCCcEEeeecC----CCCCcCC-CCCCcc-cceeeccccccccccCccccccccccC
Q 043856 75 LNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFC----ENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISE 148 (275)
Q Consensus 75 ~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c----~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~ 148 (275)
+.++.|.+.++.....|..+.....|..+.|... +.+...+ .+..++ |+.|+|+++. +..+|..
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~--------- 242 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISAN--------- 242 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSC-CSCCCGG---------
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChh---------
Confidence 3567777766655444544444444444444331 2222222 255667 8888888765 6666655
Q ss_pred CCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccEEEEecC
Q 043856 149 DDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYSC 228 (275)
Q Consensus 149 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 228 (275)
+..+++|+.|+++++. +..++..+ ..+++|+.|+|++| +++.+|..++.+++|++|++++|
T Consensus 243 -----------~~~l~~L~~L~Ls~N~-l~~lp~~~------~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 243 -----------IFKYDFLTRLYLNGNS-LTELPAEI------KNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp -----------GGGCCSCSCCBCTTSC-CSCCCGGG------GGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSS
T ss_pred -----------hcCCCCCCEEEeeCCc-CcccChhh------hCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCC
Confidence 3467888888888753 44555422 26888888888888 67788888888888888888877
Q ss_pred CCCccCCccccccCCCCCcccceecc
Q 043856 229 ENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 229 ~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
.++.+|. .+..+++|++|+++
T Consensus 304 -~l~~lp~----~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 304 -MVTTLPW----EFGNLCNLQFLGVE 324 (727)
T ss_dssp -CCCCCCS----STTSCTTCCCEECT
T ss_pred -CCCccCh----hhhcCCCccEEeCC
Confidence 5677777 57788888888886
No 119
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.99 E-value=4e-11 Score=108.53 Aligned_cols=205 Identities=22% Similarity=0.237 Sum_probs=95.6
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcc-ccccc-CCCC----CCcEEeeecCCCCC----cCC-CCCCcc-cceeecccccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNI-LPKWL-TSLT----NLRDLKLVFCENCE----HLP-PLGKLP-LEKLELRDLKS 132 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l-~~l~----~L~~L~L~~c~~~~----~lp-~l~~L~-L~~L~l~~~~~ 132 (275)
..++..+..+++|++|+++++.... .+..+ ..++ +|++|++++|.... .++ .+..++ |++|+++++.
T Consensus 46 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~- 124 (461)
T 1z7x_W 46 KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL- 124 (461)
T ss_dssp HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-
T ss_pred HHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-
Confidence 3456666666777777776665432 11111 2333 57777777653221 122 245566 6666666554
Q ss_pred ccccCcc-ccc-----cccccCCCCCCCCC--------CCCCCCCCcccEeecccccccccccc-ccccccccCCCCccc
Q 043856 133 VKRVGNE-FLG-----IEEISEDDPSSSSS--------SSSVTAFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLS 197 (275)
Q Consensus 133 l~~l~~~-~~~-----~~~~~~~~~~~~~~--------~~~l~~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~ 197 (275)
+...... +.. ...+..+.++.... ...+..+++|+.|+++++. +..... .+. ......+++|+
T Consensus 125 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~-~~l~~~~~~L~ 202 (461)
T 1z7x_W 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLC-QGLKDSPCQLE 202 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHH-HHHHHSCCCCC
T ss_pred CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHH-HHHhcCCCCce
Confidence 3221100 000 00011111110000 0112345677777777654 221110 000 00000245777
Q ss_pred EEeEccCcccCc-----CccccCCCCCccEEEEecCCCCccCCccc--cccCCCCCcccceecc---ccc-----cchhh
Q 043856 198 SLKVGSCNKLKA-----LPDYLLQTTALQELSIYSCENLEELPIPE--DRRTTDIPRLSSLRIG---LKV-----LPDYL 262 (275)
Q Consensus 198 ~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~~~~l~~L~~L~l~---l~~-----lp~~l 262 (275)
.|++++| .++. ++..+..+++|++|++++|. +....... ......+++|++|+++ ++. +|..+
T Consensus 203 ~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 203 ALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280 (461)
T ss_dssp EEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred EEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH
Confidence 7777777 4554 45555667777777777763 22210000 0012236677777774 333 56666
Q ss_pred cCCCCccEEEec
Q 043856 263 LRTTMLQELSIS 274 (275)
Q Consensus 263 ~~L~~L~~L~l~ 274 (275)
.++++|++|+++
T Consensus 281 ~~~~~L~~L~Ls 292 (461)
T 1z7x_W 281 RAKESLKELSLA 292 (461)
T ss_dssp HHCTTCCEEECT
T ss_pred hhCCCcceEECC
Confidence 666777777765
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.99 E-value=4.5e-10 Score=88.66 Aligned_cols=130 Identities=17% Similarity=0.205 Sum_probs=94.0
Q ss_pred cCCCCCCcEEeeecCCCCCcCCCCCCcc--cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEeec
Q 043856 94 LTSLTNLRDLKLVFCENCEHLPPLGKLP--LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEI 171 (275)
Q Consensus 94 l~~l~~L~~L~L~~c~~~~~lp~l~~L~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 171 (275)
+..+++|++|++++| .+..+|.+..+. |++|+++++. ++.++ . +..+++|+.|++
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~~-~--------------------l~~l~~L~~L~L 71 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNE-IRKLD-G--------------------FPLLRRLKTLLV 71 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSC-CCEEC-C--------------------CCCCSSCCEEEC
T ss_pred cCCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCC-CCccc-c--------------------cccCCCCCEEEC
Confidence 347889999999995 556677766654 9999999875 65552 2 557899999999
Q ss_pred cccccccccccccccccccCCCCcccEEeEccCcccCcCcc--ccCCCCCccEEEEecCCCCccCCccccccCCCCCccc
Q 043856 172 KELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD--YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLS 249 (275)
Q Consensus 172 ~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~ 249 (275)
+++. +..++..+ +..+++|+.|++++| +++.+|. .+..+++|+.|++++|+ +..+|......+..+++|+
T Consensus 72 s~N~-l~~~~~~~-----~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 72 NNNR-ICRIGEGL-----DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVR 143 (176)
T ss_dssp CSSC-CCEECSCH-----HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCS
T ss_pred CCCc-ccccCcch-----hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccc
Confidence 8764 44444211 126899999999998 6888886 78889999999999885 4455541111255688888
Q ss_pred ceecc
Q 043856 250 SLRIG 254 (275)
Q Consensus 250 ~L~l~ 254 (275)
+|+++
T Consensus 144 ~Ld~~ 148 (176)
T 1a9n_A 144 VLDFQ 148 (176)
T ss_dssp EETTE
T ss_pred eeCCC
Confidence 88885
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.98 E-value=1.4e-11 Score=115.05 Aligned_cols=182 Identities=23% Similarity=0.253 Sum_probs=110.0
Q ss_pred CCCCCCCeEEecccCCcc-cccccC-CCCCCcEEeeecCCCCCc--CCCC-CCcc-cceeeccccccccccCcccccccc
Q 043856 72 QPPLNVEKLWIIFYGGNI-LPKWLT-SLTNLRDLKLVFCENCEH--LPPL-GKLP-LEKLELRDLKSVKRVGNEFLGIEE 145 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~-lp~~l~-~l~~L~~L~L~~c~~~~~--lp~l-~~L~-L~~L~l~~~~~l~~l~~~~~~~~~ 145 (275)
..+++|++|+++++.... .+..+. .+++|++|++.+|..+.. ++.+ ..++ |++|++++|. +..........
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~-- 178 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSH-- 178 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGG--
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHH--
Confidence 456788899988876433 333443 678899999988754443 3333 2567 8899988875 44332221111
Q ss_pred ccCCCCCCCCCCCCCCCCCcccEeeccccc-ccc--ccccccccccccCCCCcccEEeEccCcccCcCccccCCCCCccE
Q 043856 146 ISEDDPSSSSSSSSVTAFPKLKSLEIKELD-LLE--EWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTALQE 222 (275)
Q Consensus 146 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~l~--~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 222 (275)
....+++|+.|++.++. .+. .+.. ....+++|+.|++.+|..+..+|..+..+++|++
T Consensus 179 -------------~~~~~~~L~~L~l~~~~~~~~~~~l~~------l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 239 (594)
T 2p1m_B 179 -------------FPDTYTSLVSLNISCLASEVSFSALER------LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEE 239 (594)
T ss_dssp -------------SCTTCCCCCEEECTTCCSCCCHHHHHH------HHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSE
T ss_pred -------------HhhcCCcCcEEEecccCCcCCHHHHHH------HHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceE
Confidence 03367789999888775 111 1111 0114788999999888666667777777888888
Q ss_pred EEEecC-------------------CCCccC------Cccccc-cCCCCCcccceeccccc-----cchhhcCCCCccEE
Q 043856 223 LSIYSC-------------------ENLEEL------PIPEDR-RTTDIPRLSSLRIGLKV-----LPDYLLRTTMLQEL 271 (275)
Q Consensus 223 L~l~~c-------------------~~l~~l------~~~~~~-~~~~l~~L~~L~l~l~~-----lp~~l~~L~~L~~L 271 (275)
|.+..| +.++.+ ...... .+..+++|++|+++-.. ++..+.++++|++|
T Consensus 240 L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L 319 (594)
T 2p1m_B 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRL 319 (594)
T ss_dssp EECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEE
T ss_pred cccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEE
Confidence 875443 323222 000000 11246889999986221 23345688999999
Q ss_pred EecC
Q 043856 272 SISE 275 (275)
Q Consensus 272 ~l~~ 275 (275)
++++
T Consensus 320 ~l~~ 323 (594)
T 2p1m_B 320 WVLD 323 (594)
T ss_dssp EEEG
T ss_pred eCcC
Confidence 8863
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.96 E-value=8.4e-11 Score=103.58 Aligned_cols=204 Identities=13% Similarity=0.102 Sum_probs=105.8
Q ss_pred HHHHhcCCCC-CCCeEEecccCCcc-cccccCCC-----CCCcEEeeecCCCCCcCCC-----CCCc-c-cceeeccccc
Q 043856 66 QLLEALQPPL-NVEKLWIIFYGGNI-LPKWLTSL-----TNLRDLKLVFCENCEHLPP-----LGKL-P-LEKLELRDLK 131 (275)
Q Consensus 66 ~l~~~l~~l~-~L~~L~l~~~~~~~-lp~~l~~l-----~~L~~L~L~~c~~~~~lp~-----l~~L-~-L~~L~l~~~~ 131 (275)
.+.+.+..++ +|++|++++|.... .+..+..+ ++|++|++++|......+. +..+ + |+.|++++|.
T Consensus 41 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 41 ELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp HHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 3445555555 67777776665443 23333332 6677777766432211111 2233 4 6666666554
Q ss_pred cccccCccccc------cccccCCCCCCCCC--------CCCCCCCC-cccEeecccccccccccc-ccccccccCCC-C
Q 043856 132 SVKRVGNEFLG------IEEISEDDPSSSSS--------SSSVTAFP-KLKSLEIKELDLLEEWNY-RITRKENISIM-P 194 (275)
Q Consensus 132 ~l~~l~~~~~~------~~~~~~~~~~~~~~--------~~~l~~l~-~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l-~ 194 (275)
+...+..... ...+..+.++.... ...+..++ +|+.|+++++. +..... .+. .....+ +
T Consensus 121 -l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~--~~l~~~~~ 196 (362)
T 3goz_A 121 -FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELA--KFLASIPA 196 (362)
T ss_dssp -GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHH--HHHHTSCT
T ss_pred -CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHH--HHHHhCCC
Confidence 4433322110 00111111110000 00112343 77777777653 221111 000 011135 5
Q ss_pred cccEEeEccCcccCc-----CccccCC-CCCccEEEEecCCCCccCCcc-ccccCCCCCcccceecc-----------cc
Q 043856 195 RLSSLKVGSCNKLKA-----LPDYLLQ-TTALQELSIYSCENLEELPIP-EDRRTTDIPRLSSLRIG-----------LK 256 (275)
Q Consensus 195 ~L~~L~l~~c~~l~~-----lp~~l~~-l~~L~~L~l~~c~~l~~l~~~-~~~~~~~l~~L~~L~l~-----------l~ 256 (275)
+|+.|++++| .++. ++..+.. .++|++|++++|. +...+.. ....+..+++|++|+++ +.
T Consensus 197 ~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 197 SVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp TCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred CCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 9999999998 5766 5655655 3599999999884 4443321 01134568899999995 22
Q ss_pred ccchhhcCCCCccEEEecC
Q 043856 257 VLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 257 ~lp~~l~~L~~L~~L~l~~ 275 (275)
.++..+.++++|+.|++++
T Consensus 275 ~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHTTSTTCCEEEEECTTS
T ss_pred HHHHHhccCCceEEEecCC
Confidence 3444667888899998864
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.93 E-value=5.6e-09 Score=83.59 Aligned_cols=122 Identities=17% Similarity=0.246 Sum_probs=82.3
Q ss_pred CeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC---CCCcc-cceeeccccccccccCccccccccccCCCCCC
Q 043856 78 EKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP---LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSS 153 (275)
Q Consensus 78 ~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~---l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 153 (275)
+.++++++....+|..+.. +|++|++++| .+..++. ++.++ |++|+++++. ++.++..
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-------------- 72 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN-------------- 72 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT--------------
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHh--------------
Confidence 6777777776667765543 7888888884 4454443 56777 8888888764 5554221
Q ss_pred CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-CccccCCCCCccEEEEecCC
Q 043856 154 SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-LPDYLLQTTALQELSIYSCE 229 (275)
Q Consensus 154 ~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c~ 229 (275)
.+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++. .|..+..+++|++|++++++
T Consensus 73 -----~~~~l~~L~~L~Ls~N~-l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 73 -----AFEGASHIQELQLGENK-IKEISN-----KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp -----TTTTCTTCCEEECCSCC-CCEECS-----SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred -----HcCCcccCCEEECCCCc-CCccCH-----HHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 14467888888887653 443332 12336788888888887 5665 46677888888888888875
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.93 E-value=7.2e-10 Score=106.36 Aligned_cols=134 Identities=14% Similarity=0.022 Sum_probs=76.7
Q ss_pred HHHhcCCCCCCCeEEeccc-----CCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCcc
Q 043856 67 LLEALQPPLNVEKLWIIFY-----GGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNE 139 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~-----~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~ 139 (275)
++..+....+|+.+.|... .....|..+..+++|+.|+|++|. +..+| .+..++ |++|+|+++. +..+|..
T Consensus 188 ~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~ 265 (727)
T 4b8c_D 188 ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNS-LTELPAE 265 (727)
T ss_dssp ----------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSC-CSCCCGG
T ss_pred chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCc-CcccChh
Confidence 4444444445555544332 222245566688888888888844 44565 366777 8888888764 6677655
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccccCCCCC
Q 043856 140 FLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYLLQTTA 219 (275)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 219 (275)
+..+++|+.|+++++. +..++..+ ..+++|+.|++++| .++.+|..++.+++
T Consensus 266 --------------------~~~l~~L~~L~Ls~N~-l~~lp~~~------~~l~~L~~L~L~~N-~l~~lp~~~~~l~~ 317 (727)
T 4b8c_D 266 --------------------IKNLSNLRVLDLSHNR-LTSLPAEL------GSCFQLKYFYFFDN-MVTTLPWEFGNLCN 317 (727)
T ss_dssp --------------------GGGGTTCCEEECTTSC-CSSCCSSG------GGGTTCSEEECCSS-CCCCCCSSTTSCTT
T ss_pred --------------------hhCCCCCCEEeCcCCc-CCccChhh------cCCCCCCEEECCCC-CCCccChhhhcCCC
Confidence 4467888888888754 44555422 26788888888887 67888888888888
Q ss_pred ccEEEEecCCC
Q 043856 220 LQELSIYSCEN 230 (275)
Q Consensus 220 L~~L~l~~c~~ 230 (275)
|+.|+|++|+.
T Consensus 318 L~~L~L~~N~l 328 (727)
T 4b8c_D 318 LQFLGVEGNPL 328 (727)
T ss_dssp CCCEECTTSCC
T ss_pred ccEEeCCCCcc
Confidence 88888888753
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.92 E-value=6e-09 Score=83.43 Aligned_cols=102 Identities=16% Similarity=0.269 Sum_probs=71.2
Q ss_pred CcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCccCCccccccC
Q 043856 164 PKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEELPIPEDRRT 242 (275)
Q Consensus 164 ~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 242 (275)
++|+.|++.++. +..++. .+.+..+++|+.|+++++ +++.+ |..+..+++|++|++++| .+..++.. .+
T Consensus 29 ~~l~~L~l~~n~-i~~~~~----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~---~~ 98 (192)
T 1w8a_A 29 LHTTELLLNDNE-LGRISS----DGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISNK---MF 98 (192)
T ss_dssp TTCSEEECCSCC-CCSBCC----SCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECSS---SS
T ss_pred CCCCEEECCCCc-CCccCC----ccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-cCCccCHH---Hh
Confidence 478888887653 444332 111336888888888887 57665 667888888888888887 45555542 46
Q ss_pred CCCCcccceecc---cccc-chhhcCCCCccEEEecC
Q 043856 243 TDIPRLSSLRIG---LKVL-PDYLLRTTMLQELSISE 275 (275)
Q Consensus 243 ~~l~~L~~L~l~---l~~l-p~~l~~L~~L~~L~l~~ 275 (275)
..+++|++|+++ ++.+ |..+..+++|+.|++++
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 678888888886 5544 66788888888888864
No 126
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.92 E-value=1.1e-10 Score=109.06 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=21.4
Q ss_pred CCCcccEEeEccCcccCcCccccCCCCCccEEEEec
Q 043856 192 IMPRLSSLKVGSCNKLKALPDYLLQTTALQELSIYS 227 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 227 (275)
.+++|+.|.+.+| .+..+|..+..+++|++|.+.+
T Consensus 218 ~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 218 NCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECB
T ss_pred hCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccc
Confidence 4566777777666 4555555555566666666654
No 127
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.91 E-value=3.6e-11 Score=108.82 Aligned_cols=206 Identities=24% Similarity=0.192 Sum_probs=101.2
Q ss_pred HHHHHhcCCCCCCCeEEecccCCcc-cccccC-----CCCCCcEEeeecCCCCCc----CC-CCCCcc-cceeecccccc
Q 043856 65 EQLLEALQPPLNVEKLWIIFYGGNI-LPKWLT-----SLTNLRDLKLVFCENCEH----LP-PLGKLP-LEKLELRDLKS 132 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~~~~~-lp~~l~-----~l~~L~~L~L~~c~~~~~----lp-~l~~L~-L~~L~l~~~~~ 132 (275)
..++..+..+++|++|++++|.... -+..+. ..++|++|++++|..... ++ .+..++ |+.|+++++.
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~- 238 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK- 238 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-
Confidence 3456666667777777777765432 112221 345677777776532210 11 133345 6666666553
Q ss_pred ccccC-----cccc-ccccccCCCCCCCCC--------CCCCCCCCcccEeecccccccccccc-ccccccccCCCCccc
Q 043856 133 VKRVG-----NEFL-GIEEISEDDPSSSSS--------SSSVTAFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLS 197 (275)
Q Consensus 133 l~~l~-----~~~~-~~~~~~~~~~~~~~~--------~~~l~~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~ 197 (275)
+.... ..+. ....+..+.++.... ...+..+++|+.|+++++. +..... .+. .......++|+
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~-~~l~~~~~~L~ 316 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLC-ETLLEPGCQLE 316 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHH-HHHTSTTCCCC
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHH-HHhccCCccce
Confidence 32211 0000 000000010000000 0112346677777776653 211100 000 00011246788
Q ss_pred EEeEccCcccCc-----CccccCCCCCccEEEEecCCCCccCCcc-ccccCC-CCCcccceecc---cc-----ccchhh
Q 043856 198 SLKVGSCNKLKA-----LPDYLLQTTALQELSIYSCENLEELPIP-EDRRTT-DIPRLSSLRIG---LK-----VLPDYL 262 (275)
Q Consensus 198 ~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~-~l~~L~~L~l~---l~-----~lp~~l 262 (275)
.|++++| .++. +|..+..+++|++|++++|. +...... ....+. ..++|++|+++ ++ .+|..+
T Consensus 317 ~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 394 (461)
T 1z7x_W 317 SLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL 394 (461)
T ss_dssp EEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred eeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH
Confidence 8888887 3543 45556667888888888773 3322110 000111 25688888885 44 677778
Q ss_pred cCCCCccEEEecC
Q 043856 263 LRTTMLQELSISE 275 (275)
Q Consensus 263 ~~L~~L~~L~l~~ 275 (275)
..+++|++|++++
T Consensus 395 ~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 395 LANHSLRELDLSN 407 (461)
T ss_dssp HHCCCCCEEECCS
T ss_pred HhCCCccEEECCC
Confidence 8888888888864
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.88 E-value=1.5e-08 Score=81.30 Aligned_cols=122 Identities=17% Similarity=0.211 Sum_probs=67.0
Q ss_pred CeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCC-CCCCcc-cceeeccccccccccCccccccccccCCCCCCCC
Q 043856 78 EKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLP-PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSS 155 (275)
Q Consensus 78 ~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp-~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 155 (275)
+.++++++....+|..+. ++|++|++++ +.+..+| .+..++ |+.|+++++. ++.++...
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~--------------- 73 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQS--------------- 73 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTT---------------
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCC-CcCchhHHHhhcccCCCEEECCCCc-CCEeCHhH---------------
Confidence 345555555444554432 4566666666 3344444 344555 6666666543 44443221
Q ss_pred CCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCC
Q 043856 156 SSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCE 229 (275)
Q Consensus 156 ~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 229 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.+|.. +..+++|+.|++.+++
T Consensus 74 ----f~~l~~L~~L~Ls~N~-l~~i~~-----~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 74 ----FSNMTQLLTLILSYNR-LRCIPP-----RTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp ----TTTCTTCCEEECCSSC-CCBCCT-----TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ----ccCCCCCCEEECCCCc-cCEeCH-----HHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 3356666666666543 333321 12235677777777776 56666653 5667777777777654
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.87 E-value=1.6e-08 Score=80.99 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=71.7
Q ss_pred CCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCCccCCcccccc
Q 043856 163 FPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENLEELPIPEDRR 241 (275)
Q Consensus 163 l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 241 (275)
+++|+.|++.++. +..++. .+..+++|+.|+++++ +++.++. .+..+++|++|++++| .+..++.. .
T Consensus 30 ~~~l~~L~L~~n~-i~~ip~------~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~---~ 97 (193)
T 2wfh_A 30 PRDVTELYLDGNQ-FTLVPK------ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPR---T 97 (193)
T ss_dssp CTTCCEEECCSSC-CCSCCG------GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTT---T
T ss_pred CCCCCEEECCCCc-CchhHH------HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHH---H
Confidence 4578888887643 444442 2236788888888887 6777653 5778888888888887 45555542 4
Q ss_pred CCCCCcccceecc---ccccch-hhcCCCCccEEEecC
Q 043856 242 TTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSISE 275 (275)
Q Consensus 242 ~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l~~ 275 (275)
+..+++|++|+++ ++.+|. .+..+++|+.|++++
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 6678888888886 777776 477888888888763
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.87 E-value=2.6e-08 Score=78.38 Aligned_cols=123 Identities=21% Similarity=0.267 Sum_probs=81.8
Q ss_pred CCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccccccccccCCCCCC
Q 043856 77 VEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSS 153 (275)
Q Consensus 77 L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 153 (275)
.+.++++++....+|..+ .++|++|++++| .+..++. ++.++ |++|+++++. +..++...
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~------------- 71 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGV------------- 71 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTT-------------
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCc-ceEeChhH-------------
Confidence 456777766666566443 367888888884 3445553 56677 8888888664 55555431
Q ss_pred CCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcccc-CCCCCccEEEEecCC
Q 043856 154 SSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDYL-LQTTALQELSIYSCE 229 (275)
Q Consensus 154 ~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 229 (275)
+..+++|+.|+++++. +..++. ..+..+++|+.|+++++ +++.+|... ..+++|++|++++|+
T Consensus 72 ------~~~l~~L~~L~l~~N~-l~~~~~-----~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 72 ------FDKLTKLTILYLHENK-LQSLPN-----GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ------TTTCTTCCEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------ccCCCccCEEECCCCC-ccccCH-----HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 3467788888887653 433332 11236788888888887 677777653 678888888888875
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.82 E-value=4e-08 Score=77.31 Aligned_cols=102 Identities=24% Similarity=0.308 Sum_probs=69.4
Q ss_pred CCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCCCCccCCcccccc
Q 043856 163 FPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCENLEELPIPEDRR 241 (275)
Q Consensus 163 l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 241 (275)
+++|+.|++.++. +..++. ..+..+++|+.|+++++ +++.+|.. +..+++|++|++++| .+..++.. .
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~---~ 95 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPH-----GVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNG---V 95 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCT-----TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---T
T ss_pred CCCCcEEEeCCCc-ccEeCH-----HHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHH---H
Confidence 4678888887653 443332 12236788888888887 67777654 467888888888876 45555542 3
Q ss_pred CCCCCcccceecc---ccccchh-hcCCCCccEEEecC
Q 043856 242 TTDIPRLSSLRIG---LKVLPDY-LLRTTMLQELSISE 275 (275)
Q Consensus 242 ~~~l~~L~~L~l~---l~~lp~~-l~~L~~L~~L~l~~ 275 (275)
+..+++|++|+++ ++.+|.. +..+++|+.|++++
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 4567888888885 7777764 47788888888763
No 132
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.79 E-value=1e-09 Score=102.41 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=18.3
Q ss_pred CCcccceecc-------ccc------cchhhcCCCCccEEEec
Q 043856 245 IPRLSSLRIG-------LKV------LPDYLLRTTMLQELSIS 274 (275)
Q Consensus 245 l~~L~~L~l~-------l~~------lp~~l~~L~~L~~L~l~ 274 (275)
+++|+.|+++ ++. ++..+..+++|+.|+++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 6677777773 222 33335567888888773
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.76 E-value=1.1e-10 Score=93.96 Aligned_cols=129 Identities=15% Similarity=0.175 Sum_probs=96.1
Q ss_pred HHHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC-CCCcc-cceeeccccccccccCcccccc
Q 043856 66 QLLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP-LGKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 66 ~l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~-l~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
.+|..+..+++|++|++++|....+| .+..+++|++|++++| .+..+|. +..++ |+.|+++++. +..+| .
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~---- 110 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQ-IASLS-G---- 110 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEE-CCCHH-H----
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCc-CCcCC-c----
Confidence 45567788999999999999877788 8889999999999995 4557775 34457 9999999874 66665 2
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcC-cc----------
Q 043856 144 EEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKAL-PD---------- 212 (275)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~l-p~---------- 212 (275)
+..+++|+.|++.++. +..++. ......+++|+.|++++|+ +... |.
T Consensus 111 ----------------~~~l~~L~~L~l~~N~-i~~~~~----~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 111 ----------------IEKLVNLRVLYMSNNK-ITNWGE----IDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIE 168 (198)
T ss_dssp ----------------HHHHHHSSEEEESEEE-CCCHHH----HHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHH
T ss_pred ----------------cccCCCCCEEECCCCc-CCchhH----HHHHhcCCCCCEEEecCCc-cccccccccchHHHHHH
Confidence 4468899999998754 433331 0122379999999999984 5443 32
Q ss_pred ccCCCCCccEEE
Q 043856 213 YLLQTTALQELS 224 (275)
Q Consensus 213 ~l~~l~~L~~L~ 224 (275)
.+..+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 166789999886
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=1.2e-07 Score=82.13 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=60.4
Q ss_pred CCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCcc-EEEEecCCCCccCCccccc
Q 043856 163 FPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQ-ELSIYSCENLEELPIPEDR 240 (275)
Q Consensus 163 l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~-~L~l~~c~~l~~l~~~~~~ 240 (275)
+++|+.+++.++. +..++ ...+..+++|+.+.+.++ ++.++. .+.++++|+ .+.+.+ .++.++..
T Consensus 225 ~~~L~~l~L~~n~-i~~I~-----~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~--- 291 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIP-----DFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG--- 291 (329)
T ss_dssp CTTCCEEECTTBC-CCEEC-----TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTT---
T ss_pred cCCCeEEECCCCC-cceec-----HhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchh---
Confidence 4556666665421 33322 123345677777777663 666653 356677777 777765 55555542
Q ss_pred cCCCCCcccceecc---ccccch-hhcCCCCccEEEe
Q 043856 241 RTTDIPRLSSLRIG---LKVLPD-YLLRTTMLQELSI 273 (275)
Q Consensus 241 ~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L~~L~l 273 (275)
.+..+++|+.+.+. ++.++. .+.++++|+.++.
T Consensus 292 aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 56678888888873 677764 6777888887763
No 135
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.69 E-value=9.4e-10 Score=102.58 Aligned_cols=175 Identities=22% Similarity=0.241 Sum_probs=106.7
Q ss_pred CCCCCCeEEecccCCcc---cccccCCCCCCcEEeeecCCCCC----cCCCC-CCcc-cceeeccccccccccCcccccc
Q 043856 73 PPLNVEKLWIIFYGGNI---LPKWLTSLTNLRDLKLVFCENCE----HLPPL-GKLP-LEKLELRDLKSVKRVGNEFLGI 143 (275)
Q Consensus 73 ~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~c~~~~----~lp~l-~~L~-L~~L~l~~~~~l~~l~~~~~~~ 143 (275)
.+++|++|++++|.... ++....++++|++|++++|.... .++.+ ..++ |+.|++++|. ..++......
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~ 205 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALER 205 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHH
Confidence 47899999999885332 44445589999999999975211 12222 3567 9999999775 2222110000
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccC-------------------
Q 043856 144 EEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSC------------------- 204 (275)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c------------------- 204 (275)
. ...+++|+.|++.+|..+..++..+. .+++|+.|.+..|
T Consensus 206 l---------------~~~~~~L~~L~L~~~~~~~~l~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 206 L---------------VTRCPNLKSLKLNRAVPLEKLATLLQ------RAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp H---------------HHHCTTCCEEECCTTSCHHHHHHHHH------HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred H---------------HHhCCCCcEEecCCCCcHHHHHHHHh------cCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 0 23478899999988765554433111 4666777654333
Q ss_pred cccC-----------cCccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc--c--cccchhhcCCCCcc
Q 043856 205 NKLK-----------ALPDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG--L--KVLPDYLLRTTMLQ 269 (275)
Q Consensus 205 ~~l~-----------~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~--l--~~lp~~l~~L~~L~ 269 (275)
++++ .+|..+..+++|++|++++|. +..... ...+..+++|++|+++ + ..++.....+++|+
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l--~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDL--VKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHH--HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHH--HHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCC
Confidence 2222 233333457899999999986 432111 0124568999999996 2 22333345689999
Q ss_pred EEEe
Q 043856 270 ELSI 273 (275)
Q Consensus 270 ~L~l 273 (275)
+|+|
T Consensus 342 ~L~L 345 (594)
T 2p1m_B 342 ELRV 345 (594)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9988
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.62 E-value=2e-07 Score=73.40 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=25.6
Q ss_pred CeEEecccCCcccccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeecccc
Q 043856 78 EKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDL 130 (275)
Q Consensus 78 ~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~ 130 (275)
+.++++++....+|..+. ++|++|++++| .+..+++ ++.++ |++|+++++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 67 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN 67 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC
Confidence 455665555555555443 56666666663 3333321 44455 555555544
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.59 E-value=2.9e-07 Score=72.05 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=20.9
Q ss_pred CCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCC
Q 043856 192 IMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCE 229 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 229 (275)
.+++|+.|+++++ +++.+|.. +..+++|++|++++++
T Consensus 76 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 76 KLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 4555666666555 45555443 5556666666666553
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.52 E-value=3.9e-07 Score=71.67 Aligned_cols=57 Identities=23% Similarity=0.333 Sum_probs=26.1
Q ss_pred CCCcccEEeEccCcccCcCccc-cCCCCCccEEEEecCCCCccCCccccccCCCCCcccceec
Q 043856 192 IMPRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRI 253 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l 253 (275)
.+++|+.|+++++ +++.+|.. +..+++|++|++++| .+..++.. .+..+++|++|++
T Consensus 55 ~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~---~~~~l~~L~~L~L 112 (174)
T 2r9u_A 55 HLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRG---AFDNLKSLTHIYL 112 (174)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCSEEEC
T ss_pred CCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHH---HhccccCCCEEEe
Confidence 3455555555554 44444443 244555555555443 33333331 2334455555555
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.47 E-value=6.4e-07 Score=70.08 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=35.1
Q ss_pred CcccEEeEccCcccCcC-ccccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---ccccch-hhcCCCCc
Q 043856 194 PRLSSLKVGSCNKLKAL-PDYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---LKVLPD-YLLRTTML 268 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l~~lp~-~l~~L~~L 268 (275)
++|+.|+++++ +++.+ |..+..+++|++|++++| .+..++.. .+..+++|++|+++ ++.+|. .+..+++|
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~---~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAG---VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSL 104 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChh---hccCCCCCCEEECCCCccCEeCHHHhcCCCCC
Confidence 44555555554 34443 333444555555555544 33344331 22345555555553 444443 24455555
Q ss_pred cEEEec
Q 043856 269 QELSIS 274 (275)
Q Consensus 269 ~~L~l~ 274 (275)
+.|+++
T Consensus 105 ~~L~L~ 110 (170)
T 3g39_A 105 THIWLL 110 (170)
T ss_dssp CEEECC
T ss_pred CEEEeC
Confidence 555543
No 140
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.41 E-value=7.1e-08 Score=84.90 Aligned_cols=162 Identities=16% Similarity=0.097 Sum_probs=89.4
Q ss_pred hHHHHHHhcCCCCCCCeEEecccCCc----------ccccccCCCCCCcEEeeecCCCCCcCCCCCCcc-cceeeccccc
Q 043856 63 KDEQLLEALQPPLNVEKLWIIFYGGN----------ILPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP-LEKLELRDLK 131 (275)
Q Consensus 63 ~~~~l~~~l~~l~~L~~L~l~~~~~~----------~lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~-L~~L~l~~~~ 131 (275)
..+.+.+++..+++|+.|.|...... .++..+..+++|+.|.|++|... .++.+. ++ |+.|.|..|.
T Consensus 127 ~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 127 IADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGG 204 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSB
T ss_pred HHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCC
Confidence 34456666667789999988653211 13344557889999999886332 344443 66 8888887553
Q ss_pred cccccCccccccccccCCCCCCCCCCCCCCCCCcccEeecccccc-------ccccccccccccccCCCCcccEEeEccC
Q 043856 132 SVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDL-------LEEWNYRITRKENISIMPRLSSLKVGSC 204 (275)
Q Consensus 132 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-------l~~l~~~i~~~~~~~~l~~L~~L~l~~c 204 (275)
+..-...... ...+|+|+.|++....+ +..+...+ ....+|+|+.|.+.+|
T Consensus 205 -l~~~~l~~l~-----------------~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l----~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 205 -LPDSVVEDIL-----------------GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF----SKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -CCHHHHHHHH-----------------HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS----CTTTCTTCCEEEEESC
T ss_pred -CChHHHHHHH-----------------HccCCCCcEEEEeccccccccchhHHHHHHHH----hcCCCCCcCEEeCCCC
Confidence 2211100000 12588888888742111 11111100 1125788888888877
Q ss_pred cccCc-Cccc---cCCCCCccEEEEecCCCCcc-----CCccccccCCCCCcccceecc
Q 043856 205 NKLKA-LPDY---LLQTTALQELSIYSCENLEE-----LPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 205 ~~l~~-lp~~---l~~l~~L~~L~l~~c~~l~~-----l~~~~~~~~~~l~~L~~L~l~ 254 (275)
. +.. .+.. ...+++|++|+++.| .++. ++. .+..+++|+.|+++
T Consensus 263 ~-i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~----~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 263 E-EQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLD----HVDKIKHLKFINMK 315 (362)
T ss_dssp T-THHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHT----THHHHTTCSEEECC
T ss_pred C-CchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHh----hcccCCcceEEECC
Confidence 3 331 1111 134678888888665 3433 111 22346777887775
No 141
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=7.6e-08 Score=84.72 Aligned_cols=146 Identities=20% Similarity=0.156 Sum_probs=88.7
Q ss_pred HHHhcCCCCCCCeEEecccCCcccccccCCCCCCcEEeeecCCCCC-cCCCC--CCcc-cceeeccccccccccCccccc
Q 043856 67 LLEALQPPLNVEKLWIIFYGGNILPKWLTSLTNLRDLKLVFCENCE-HLPPL--GKLP-LEKLELRDLKSVKRVGNEFLG 142 (275)
Q Consensus 67 l~~~l~~l~~L~~L~l~~~~~~~lp~~l~~l~~L~~L~L~~c~~~~-~lp~l--~~L~-L~~L~l~~~~~l~~l~~~~~~ 142 (275)
+...+.++++|+.|.++++....+|. + .+++|++|.|..|.... .+..+ ..+| |+.|+|+.+.+...-......
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 33445677899999999886555665 4 48999999999764211 11112 3678 999988632111000000000
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCc-----CccccCCC
Q 043856 143 IEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKA-----LPDYLLQT 217 (275)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l 217 (275)
.... .....||+|+.|.+.+|.........+... ..+|+|+.|+++.| .+.. ++..+.++
T Consensus 242 l~~~-----------l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a---~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l 306 (362)
T 2ra8_A 242 FRPL-----------FSKDRFPNLKWLGIVDAEEQNVVVEMFLES---DILPQLETMDISAG-VLTDEGARLLLDHVDKI 306 (362)
T ss_dssp TGGG-----------SCTTTCTTCCEEEEESCTTHHHHHHHHHHC---SSGGGCSEEECCSS-CCBHHHHHHHHTTHHHH
T ss_pred HHHH-----------HhcCCCCCcCEEeCCCCCCchHHHHHHHhC---ccCCCCCEEECCCC-CCChHHHHHHHhhcccC
Confidence 0000 002368999999998765432222111111 25899999999876 5654 45555678
Q ss_pred CCccEEEEecCC
Q 043856 218 TALQELSIYSCE 229 (275)
Q Consensus 218 ~~L~~L~l~~c~ 229 (275)
++|+.|++++|.
T Consensus 307 ~~L~~L~L~~n~ 318 (362)
T 2ra8_A 307 KHLKFINMKYNY 318 (362)
T ss_dssp TTCSEEECCSBB
T ss_pred CcceEEECCCCc
Confidence 999999998874
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.30 E-value=1.3e-05 Score=71.47 Aligned_cols=31 Identities=16% Similarity=0.036 Sum_probs=17.0
Q ss_pred CCCeEEecccCCccc-ccccCCCCCCcEEeeec
Q 043856 76 NVEKLWIIFYGGNIL-PKWLTSLTNLRDLKLVF 107 (275)
Q Consensus 76 ~L~~L~l~~~~~~~l-p~~l~~l~~L~~L~L~~ 107 (275)
+|+.+.+.. ....+ +..+..+++|+.+++..
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence 566666654 22222 23455667777777765
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.30 E-value=2.4e-06 Score=74.28 Aligned_cols=98 Identities=20% Similarity=0.217 Sum_probs=61.2
Q ss_pred eEEeccc-CCcccccccCCCCCCcEEeeecCCCCCcCCC--CCCcc-cceeeccccccccccCccccccccccCCCCCCC
Q 043856 79 KLWIIFY-GGNILPKWLTSLTNLRDLKLVFCENCEHLPP--LGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSS 154 (275)
Q Consensus 79 ~L~l~~~-~~~~lp~~l~~l~~L~~L~L~~c~~~~~lp~--l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 154 (275)
.++.++. ....+|. +..+++|++|+|++++.+..++. ++.++ |+.|+|+++. +..++...
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~-------------- 75 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDA-------------- 75 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTG--------------
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHH--------------
Confidence 4566665 4555888 88888888888886456666663 67777 8888888664 66655431
Q ss_pred CCCCCCCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccC
Q 043856 155 SSSSSVTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSC 204 (275)
Q Consensus 155 ~~~~~l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c 204 (275)
+..+++|+.|+|+++ .+..++..+ +..+ .|+.|.+.++
T Consensus 76 -----~~~l~~L~~L~l~~N-~l~~~~~~~-----~~~~-~L~~l~l~~N 113 (347)
T 2ifg_A 76 -----FHFTPRLSRLNLSFN-ALESLSWKT-----VQGL-SLQELVLSGN 113 (347)
T ss_dssp -----GGSCSCCCEEECCSS-CCSCCCSTT-----TCSC-CCCEEECCSS
T ss_pred -----hcCCcCCCEEeCCCC-ccceeCHHH-----cccC-CceEEEeeCC
Confidence 335777777777764 344444211 1122 2777777766
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=6.9e-06 Score=70.94 Aligned_cols=81 Identities=11% Similarity=0.042 Sum_probs=60.0
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCccc-EEeEccCcccCcCc-cccCCCCCccEEEEecCCCCccCCcc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLS-SLKVGSCNKLKALP-DYLLQTTALQELSIYSCENLEELPIP 237 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~-~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~ 237 (275)
+..+++|+.|.+.+. +..+. ...+..+++|+ .+.+.+ +++.++ ..+.++++|+.|++.++ .+..++..
T Consensus 246 F~~~~~L~~l~l~~n--i~~I~-----~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~ 315 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN--LKTIG-----QRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDE 315 (329)
T ss_dssp TTTCTTCCEEECCTT--CCEEC-----TTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTT
T ss_pred hhCCCCCCEEECCcc--cceeh-----HHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchh
Confidence 557889999999763 44443 23445789999 999987 577775 56788999999998764 66676653
Q ss_pred ccccCCCCCcccceec
Q 043856 238 EDRRTTDIPRLSSLRI 253 (275)
Q Consensus 238 ~~~~~~~l~~L~~L~l 253 (275)
.+..+++|+.++.
T Consensus 316 ---aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 316 ---LFGNGVPSKLIYK 328 (329)
T ss_dssp ---TTCTTCCCCEEEC
T ss_pred ---hhcCCcchhhhcc
Confidence 6777889988753
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.16 E-value=4.2e-06 Score=72.72 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=44.9
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCCccCCccc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENLEELPIPE 238 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~ 238 (275)
+..+++|+.|++++...+..++. ..+..+++|+.|+|+++ +++.+|. .+.++++|+.|+|++| .+..+|..
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~-----~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~- 98 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLEL-----RDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK- 98 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG-----GGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCCST-
T ss_pred CCCCCCeeEEEccCCCCCCCcCh-----hHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccceeCHH-
Confidence 44555666666665344444442 11225666666766666 5665443 4566666666666664 45555542
Q ss_pred cccCCCCCcccceecc
Q 043856 239 DRRTTDIPRLSSLRIG 254 (275)
Q Consensus 239 ~~~~~~l~~L~~L~l~ 254 (275)
.+..++ |+.|++.
T Consensus 99 --~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 99 --TVQGLS-LQELVLS 111 (347)
T ss_dssp --TTCSCC-CCEEECC
T ss_pred --HcccCC-ceEEEee
Confidence 112222 6666663
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=3.9e-06 Score=65.90 Aligned_cols=71 Identities=11% Similarity=0.227 Sum_probs=48.3
Q ss_pred CCCCCcccEeecccccccccccc-ccccccccCCCCcccEEeEccCcccCc--CccccCCCCCccEEEEecCCCCcc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLSSLKVGSCNKLKA--LPDYLLQTTALQELSIYSCENLEE 233 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~ 233 (275)
+..+++|+.|++++|..++..-. .+... ....++|+.|+|++|++++. +- .+.++++|++|+|++|+.++.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~--~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQL--ENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTC--HHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhc--ccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 34788899999988887654321 11100 00135799999999988875 32 355689999999999987764
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.96 E-value=0.00019 Score=63.91 Aligned_cols=92 Identities=14% Similarity=0.093 Sum_probs=49.1
Q ss_pred CCCeEEecccCCccccc-ccCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccccccCCCC
Q 043856 76 NVEKLWIIFYGGNILPK-WLTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDP 151 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp~-~l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 151 (275)
+|+.+.+..+ ...++. .+.. .+|+.+.+.. .+..++ .+..++ |+.+.+.++ .++.++...+....+..+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence 6777777544 222333 2333 5788888875 444444 256677 899988754 37777665443222222211
Q ss_pred CC---CCCCCCCCCCCcccEeecc
Q 043856 152 SS---SSSSSSVTAFPKLKSLEIK 172 (275)
Q Consensus 152 ~~---~~~~~~l~~l~~L~~L~l~ 172 (275)
.. .....+...+++|+.+.+.
T Consensus 211 p~~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 211 PVTLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CTTCCEECTTTTTTCTTCCCEECC
T ss_pred CCchheehhhHhhCCCCCCEEecC
Confidence 11 1112234456667777664
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=2.3e-06 Score=67.15 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=19.7
Q ss_pred CCCCCeEEecccCCcc--cccccCCCCCCcEEeeecCCCCC
Q 043856 74 PLNVEKLWIIFYGGNI--LPKWLTSLTNLRDLKLVFCENCE 112 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~L~~c~~~~ 112 (275)
-.+|++|++++|.... + ..+..+++|++|+|++|..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CCCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCC
T ss_pred CceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccC
Confidence 3456666666655321 1 123456666666666665443
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.87 E-value=2.5e-07 Score=81.79 Aligned_cols=160 Identities=16% Similarity=0.088 Sum_probs=95.6
Q ss_pred CCCCCeEEecccCCcc-----cccccC-CCCCCcEEeeecCCCCC-cCCCC-CCcc-cceeeccccccccccCccccccc
Q 043856 74 PLNVEKLWIIFYGGNI-----LPKWLT-SLTNLRDLKLVFCENCE-HLPPL-GKLP-LEKLELRDLKSVKRVGNEFLGIE 144 (275)
Q Consensus 74 l~~L~~L~l~~~~~~~-----lp~~l~-~l~~L~~L~L~~c~~~~-~lp~l-~~L~-L~~L~l~~~~~l~~l~~~~~~~~ 144 (275)
+++|++|++++|.... +...+. ..++|++|+|++|.... .+..+ ..++ |+.|++++|. +...+.......
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence 4579999999987643 222233 34799999999974311 11122 2356 9999999874 443322111000
Q ss_pred cccCCCCCCCCCCCCC-CCCCcccEeecccccccccccc-ccccccccCCCCcccEEeEccCcccCc-----CccccCCC
Q 043856 145 EISEDDPSSSSSSSSV-TAFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLSSLKVGSCNKLKA-----LPDYLLQT 217 (275)
Q Consensus 145 ~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l 217 (275)
+ ...++|+.|++++|. +..... .+. .....+++|+.|++++| .++. ++..+...
T Consensus 150 ---------------L~~~~~~L~~L~Ls~n~-l~~~~~~~l~--~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 150 ---------------LLHDQCQITTLRLSNNP-LTAAGVAVLM--EGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRN 210 (372)
T ss_dssp ---------------HHSTTCCCCEEECCSSC-CHHHHHHHHH--HHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGC
T ss_pred ---------------HHhcCCccceeeCCCCC-CChHHHHHHH--HHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcC
Confidence 1 246789999999875 322110 000 01125789999999998 4653 45566778
Q ss_pred CCccEEEEecCCCCccCCcc-ccccCCCCCcccceecc
Q 043856 218 TALQELSIYSCENLEELPIP-EDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 218 ~~L~~L~l~~c~~l~~l~~~-~~~~~~~l~~L~~L~l~ 254 (275)
++|++|++++|. ++..... ....+...++|++|+++
T Consensus 211 ~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 211 RQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLY 247 (372)
T ss_dssp SCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred CCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEecc
Confidence 899999999984 3321110 00123346889999996
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.53 E-value=4.6e-06 Score=73.57 Aligned_cols=144 Identities=15% Similarity=0.116 Sum_probs=89.3
Q ss_pred HHHHHhcCC-CCCCCeEEecccCCcc--cccccCCCCCCcEEeeecCCCCCcCC--CC-----CCcc-cceeeccccccc
Q 043856 65 EQLLEALQP-PLNVEKLWIIFYGGNI--LPKWLTSLTNLRDLKLVFCENCEHLP--PL-----GKLP-LEKLELRDLKSV 133 (275)
Q Consensus 65 ~~l~~~l~~-l~~L~~L~l~~~~~~~--lp~~l~~l~~L~~L~L~~c~~~~~lp--~l-----~~L~-L~~L~l~~~~~l 133 (275)
..+...+.. .++|++|++++|.... +..-...+++|++|+|++|. +.... .+ ...+ |+.|++++|. +
T Consensus 90 ~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l 167 (372)
T 3un9_A 90 TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-L 167 (372)
T ss_dssp HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-C
T ss_pred HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-C
Confidence 345555543 3699999999987543 22222256789999999963 32111 11 2345 9999999885 5
Q ss_pred cccCccccccccccCCCCCCCCCCCCCCCCCcccEeecccccccccccc-ccccccccCCCCcccEEeEccCcccCc---
Q 043856 134 KRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLSSLKVGSCNKLKA--- 209 (275)
Q Consensus 134 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~~L~l~~c~~l~~--- 209 (275)
+..+...... .+...++|+.|+++++. +..... .+ .......++|+.|++++| .++.
T Consensus 168 ~~~~~~~l~~---------------~L~~~~~L~~L~Ls~N~-l~~~g~~~L--~~~L~~~~~L~~L~Ls~N-~i~~~g~ 228 (372)
T 3un9_A 168 TAAGVAVLME---------------GLAGNTSVTHLSLLHTG-LGDEGLELL--AAQLDRNRQLQELNVAYN-GAGDTAA 228 (372)
T ss_dssp HHHHHHHHHH---------------HHHTCSSCCEEECTTSS-CHHHHHHHH--HHHGGGCSCCCEEECCSS-CCCHHHH
T ss_pred ChHHHHHHHH---------------HHhcCCCcCEEeCCCCC-CCcHHHHHH--HHHHhcCCCcCeEECCCC-CCCHHHH
Confidence 4432211100 13468899999999875 322110 00 001125679999999998 5663
Q ss_pred --CccccCCCCCccEEEEecCC
Q 043856 210 --LPDYLLQTTALQELSIYSCE 229 (275)
Q Consensus 210 --lp~~l~~l~~L~~L~l~~c~ 229 (275)
++..+...++|++|++++|+
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHhCCCCCEEeccCCC
Confidence 44455567899999999985
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.31 E-value=0.0022 Score=56.46 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=35.1
Q ss_pred CCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc--ccccch-hhcCCCC
Q 043856 192 IMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG--LKVLPD-YLLRTTM 267 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~--l~~lp~-~l~~L~~ 267 (275)
.+.+|+.+.+.. .++.++. .+.++++|+.+.|.. .++.+.. .++..+++|+.+.+. ++.++. ++.++++
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~---~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGK---RSFRGCTSLSNINFPLSLRKIGANAFQGCIN 367 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECT---TTTTTCTTCCEECCCTTCCEECTTTBTTCTT
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhH---HhccCCCCCCEEEECccccEehHHHhhCCCC
Confidence 445555555543 2444332 234455566555532 2333332 134445555555553 444432 4455555
Q ss_pred ccEEEe
Q 043856 268 LQELSI 273 (275)
Q Consensus 268 L~~L~l 273 (275)
|+.+++
T Consensus 368 L~~i~l 373 (394)
T 4fs7_A 368 LKKVEL 373 (394)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 555554
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.80 E-value=0.00034 Score=58.61 Aligned_cols=60 Identities=18% Similarity=0.053 Sum_probs=44.4
Q ss_pred CCCCCCCeEEecccCCcc---cccccCCCCCCcEEeeecCCCCCcCCCCCCcc---cceeecccccc
Q 043856 72 QPPLNVEKLWIIFYGGNI---LPKWLTSLTNLRDLKLVFCENCEHLPPLGKLP---LEKLELRDLKS 132 (275)
Q Consensus 72 ~~l~~L~~L~l~~~~~~~---lp~~l~~l~~L~~L~L~~c~~~~~lp~l~~L~---L~~L~l~~~~~ 132 (275)
..+++|+.|++++|.... +|..+..+++|++|+|++ +.+..+..+..+. |++|.+++++-
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTSTT
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCcC
Confidence 357789999999988765 345566899999999998 5555555555554 88888888763
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.57 E-value=0.00028 Score=55.64 Aligned_cols=112 Identities=15% Similarity=0.151 Sum_probs=69.7
Q ss_pred CCCCCcccEeecccccccccccc-ccccccccCCCCcccEEeEccCcccCc-----CccccCCCCCccEEEEecCCCCcc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNY-RITRKENISIMPRLSSLKVGSCNKLKA-----LPDYLLQTTALQELSIYSCENLEE 233 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~-~i~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~ 233 (275)
+...++|+.|+++++..+..--. .+. ......++|+.|++++| .+.. +...+...++|++|++++|. +..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~--~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACA--EALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHH--HHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHH--HHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 44678999999988733432110 000 01225688999999998 4653 34445566889999999874 332
Q ss_pred CCc-cccccCCCCCcccceec--c---c-----cccchhhcCCCCccEEEecC
Q 043856 234 LPI-PEDRRTTDIPRLSSLRI--G---L-----KVLPDYLLRTTMLQELSISE 275 (275)
Q Consensus 234 l~~-~~~~~~~~l~~L~~L~l--~---l-----~~lp~~l~~L~~L~~L~l~~ 275 (275)
--. .....+...++|++|++ + + ..+...+...++|++|++++
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 100 00114556788999999 5 2 23455667778999999863
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.45 E-value=0.0014 Score=54.94 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=38.3
Q ss_pred CCCcccEEeEccCcccCcCc---cccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc---c-cccc-----
Q 043856 192 IMPRLSSLKVGSCNKLKALP---DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG---L-KVLP----- 259 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp---~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~---l-~~lp----- 259 (275)
.+|+|+.|+++++ ++..++ ..+..+++|+.|++++| .+..+.. ...+..+ +|+.|.+. + ..+|
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--hhhcccC-CcceEEccCCcCccccCcchhH
Confidence 3666666666666 455433 33445666666666655 3333311 0112222 66666664 2 2233
Q ss_pred --hhhcCCCCccEEE
Q 043856 260 --DYLLRTTMLQELS 272 (275)
Q Consensus 260 --~~l~~L~~L~~L~ 272 (275)
..+..+++|+.|+
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 1345666666664
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.43 E-value=0.001 Score=52.35 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=32.8
Q ss_pred HHHHHhcCCCCCCCeEEeccc-CCcc-----cccccCCCCCCcEEeeecCC
Q 043856 65 EQLLEALQPPLNVEKLWIIFY-GGNI-----LPKWLTSLTNLRDLKLVFCE 109 (275)
Q Consensus 65 ~~l~~~l~~l~~L~~L~l~~~-~~~~-----lp~~l~~l~~L~~L~L~~c~ 109 (275)
+.+...+...++|++|++++| .... +...+...++|++|+|++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~ 76 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR 76 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 456677788899999999988 5432 34455577888888888853
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.40 E-value=0.063 Score=47.06 Aligned_cols=76 Identities=17% Similarity=0.325 Sum_probs=43.7
Q ss_pred CCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc--ccccch-hhcCCCC
Q 043856 192 IMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG--LKVLPD-YLLRTTM 267 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~--l~~lp~-~l~~L~~ 267 (275)
.+++|+.+.+.. .++.++. .+.++++|+.+.|.. .++.+.. .++..+.+|+.+.|. ++.++. ++.++++
T Consensus 286 ~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~---~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 286 NCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILD---DAFAGCEQLERIAIPSSVTKIPESAFSNCTA 358 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECT---TTTTTCTTCCEEEECTTCCBCCGGGGTTCTT
T ss_pred cccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehH---hHhhCCCCCCEEEECcccCEEhHhHhhCCCC
Confidence 344555555432 2444432 344567777776643 3444443 255667777777774 666653 6677777
Q ss_pred ccEEEec
Q 043856 268 LQELSIS 274 (275)
Q Consensus 268 L~~L~l~ 274 (275)
|+.+++.
T Consensus 359 L~~i~~~ 365 (394)
T 4gt6_A 359 LNNIEYS 365 (394)
T ss_dssp CCEEEES
T ss_pred CCEEEEC
Confidence 8777764
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.12 E-value=0.079 Score=46.39 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=66.5
Q ss_pred CCCCCcccEeeccccccccccccccccccccCCCCcccEEeEccCcccCcCc-cccCCCCCccEEEEecCCCCccCCccc
Q 043856 160 VTAFPKLKSLEIKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP-DYLLQTTALQELSIYSCENLEELPIPE 238 (275)
Q Consensus 160 l~~l~~L~~L~l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~ 238 (275)
...+.+|+.+.+.. +++.+. ...+..+++|+.+.|.. .++.++ ..+.++++|+.+.+.. .++.+..
T Consensus 293 F~~~~~L~~i~l~~--~i~~I~-----~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~-- 359 (394)
T 4fs7_A 293 FYGCSSLTEVKLLD--SVKFIG-----EEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGA-- 359 (394)
T ss_dssp TTTCTTCCEEEECT--TCCEEC-----TTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECT--
T ss_pred cccccccccccccc--ccceec-----hhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehH--
Confidence 33566777777643 222222 22344688999998864 466664 4567789999998854 3666654
Q ss_pred cccCCCCCcccceecc--ccccchhhcCCCCccEE
Q 043856 239 DRRTTDIPRLSSLRIG--LKVLPDYLLRTTMLQEL 271 (275)
Q Consensus 239 ~~~~~~l~~L~~L~l~--l~~lp~~l~~L~~L~~L 271 (275)
.++..+++|+.+.+. ++.+...+.++++|+.+
T Consensus 360 -~aF~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 360 -NAFQGCINLKKVELPKRLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp -TTBTTCTTCCEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred -HHhhCCCCCCEEEECCCCEEhhheecCCCCCcEE
Confidence 267789999999985 66776778888888865
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.59 E-value=0.72 Score=39.76 Aligned_cols=56 Identities=11% Similarity=0.235 Sum_probs=32.8
Q ss_pred CCCcccEEeEccCcccCcCc-cccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceec
Q 043856 192 IMPRLSSLKVGSCNKLKALP-DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRI 253 (275)
Q Consensus 192 ~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l 253 (275)
.+++|+.+.+.++ .++.++ ..+.++++|+.+.+.. .++.+.. .++..+++|+.+.+
T Consensus 284 ~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~---~aF~~C~~L~~i~i 340 (379)
T 4h09_A 284 GCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQV---YAFKNCKALSTISY 340 (379)
T ss_dssp TCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECT---TTTTTCTTCCCCCC
T ss_pred ccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHH---HHhhCCCCCCEEEE
Confidence 5677777777554 455554 3455667777776642 3444443 24556667776666
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.70 E-value=0.87 Score=39.26 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=56.5
Q ss_pred CCCCcccEEeEccCcccCcCcc-ccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc--ccccch-hhcCCC
Q 043856 191 SIMPRLSSLKVGSCNKLKALPD-YLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG--LKVLPD-YLLRTT 266 (275)
Q Consensus 191 ~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~--l~~lp~-~l~~L~ 266 (275)
..+.+|+.+.+.. +++.++. .+..+++|+.+.+.++ .++.++.. .+..+++|+.+.+. ++.++. ++.+++
T Consensus 260 ~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~---aF~~c~~L~~i~lp~~l~~I~~~aF~~C~ 333 (379)
T 4h09_A 260 QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPR---VFMDCVKLSSVTLPTALKTIQVYAFKNCK 333 (379)
T ss_dssp TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEECTT---TTTTCTTCCEEECCTTCCEECTTTTTTCT
T ss_pred ceeehhccccccc--cceecccccccccccccccccccc-ccceehhh---hhcCCCCCCEEEcCccccEEHHHHhhCCC
Confidence 3577888888854 4666654 4567899999998653 46666542 66788999999994 777764 678888
Q ss_pred CccEEEe
Q 043856 267 MLQELSI 273 (275)
Q Consensus 267 ~L~~L~l 273 (275)
+|+.+.|
T Consensus 334 ~L~~i~i 340 (379)
T 4h09_A 334 ALSTISY 340 (379)
T ss_dssp TCCCCCC
T ss_pred CCCEEEE
Confidence 8988776
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.80 E-value=1.3 Score=38.59 Aligned_cols=121 Identities=16% Similarity=0.239 Sum_probs=69.6
Q ss_pred cCCCCCCcEEeeecCCCCCcCC--CCCCcc-cceeeccccccccccCccccccccccCCCCCCCCCCCCCCCCCcccEee
Q 043856 94 LTSLTNLRDLKLVFCENCEHLP--PLGKLP-LEKLELRDLKSVKRVGNEFLGIEEISEDDPSSSSSSSSVTAFPKLKSLE 170 (275)
Q Consensus 94 l~~l~~L~~L~L~~c~~~~~lp--~l~~L~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 170 (275)
+..+++|+.+.+... +..+. .+...+ |+.+.+.. .++.++... ...+.+|+.+.
T Consensus 261 F~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~a-------------------F~~c~~L~~i~ 317 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFSS--RITELPESV-------------------FAGCISLKSID 317 (394)
T ss_dssp TTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTT-------------------TTTCTTCCEEE
T ss_pred eeecccccEEecccc--cceecCcccccccccccccCCC--cccccCcee-------------------ecCCCCcCEEE
Confidence 446778888887652 22222 244556 77777753 366665431 34677888888
Q ss_pred ccccccccccccccccccccCCCCcccEEeEccCcccCcCc-cccCCCCCccEEEEecCCCCccCCccccccCCCCCccc
Q 043856 171 IKELDLLEEWNYRITRKENISIMPRLSSLKVGSCNKLKALP-DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLS 249 (275)
Q Consensus 171 l~~~~~l~~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~ 249 (275)
+.. +++.+. ...+..+.+|+.+.|.. .++.++ ..+.++++|+.+.+.+... .+ . .+....+|+
T Consensus 318 lp~--~v~~I~-----~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~--~~-~----~~~~~~~L~ 381 (394)
T 4gt6_A 318 IPE--GITQIL-----DDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRS--QW-N----AISTDSGLQ 381 (394)
T ss_dssp CCT--TCCEEC-----TTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHH--HH-H----TCBCCCCC-
T ss_pred eCC--cccEeh-----HhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCcee--eh-h----hhhccCCCC
Confidence 853 232222 22344688999999964 466775 3567889999999876421 11 1 233456666
Q ss_pred ceec
Q 043856 250 SLRI 253 (275)
Q Consensus 250 ~L~l 253 (275)
.+.+
T Consensus 382 ~i~i 385 (394)
T 4gt6_A 382 NLPV 385 (394)
T ss_dssp ----
T ss_pred EEEe
Confidence 6554
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.60 E-value=0.29 Score=35.78 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=27.8
Q ss_pred CcccEEeEccCcccCcCccc-cCCCCCccEEEEecCC
Q 043856 194 PRLSSLKVGSCNKLKALPDY-LLQTTALQELSIYSCE 229 (275)
Q Consensus 194 ~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 229 (275)
++|+.|+|+++ +++.+|.. +..+++|+.|+|.+|+
T Consensus 31 ~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 47889999887 78888764 4668889999988875
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=82.77 E-value=1.1 Score=32.54 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=18.3
Q ss_pred CCCeEEecccCCcccccc-cCCCCCCcEEeeecC
Q 043856 76 NVEKLWIIFYGGNILPKW-LTSLTNLRDLKLVFC 108 (275)
Q Consensus 76 ~L~~L~l~~~~~~~lp~~-l~~l~~L~~L~L~~c 108 (275)
+|++|+|++|....+|.. +..+++|++|+|.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 566666666655555433 335556666666653
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=73.90 E-value=0.58 Score=36.95 Aligned_cols=106 Identities=12% Similarity=0.076 Sum_probs=61.4
Q ss_pred CCCCcccEeecccccccc-----ccccccccccccCCCCcccEEeEccCcccCc-----CccccCCCCCccEEEEecCCC
Q 043856 161 TAFPKLKSLEIKELDLLE-----EWNYRITRKENISIMPRLSSLKVGSCNKLKA-----LPDYLLQTTALQELSIYSCEN 230 (275)
Q Consensus 161 ~~l~~L~~L~l~~~~~l~-----~l~~~i~~~~~~~~l~~L~~L~l~~c~~l~~-----lp~~l~~l~~L~~L~l~~c~~ 230 (275)
..-+.|+.|+++++..+. .+.. ....-+.|+.|++++| .+.. |-..+..=++|++|+|++|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~------aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~- 109 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIE------AACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF- 109 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHH------HHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHH------HHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc-
Confidence 356789999998753332 1221 1114578999999998 5653 22333345789999998874
Q ss_pred CccCC-ccccccCCCCCcccceecc---c---c-----ccchhhcCCCCccEEEec
Q 043856 231 LEELP-IPEDRRTTDIPRLSSLRIG---L---K-----VLPDYLLRTTMLQELSIS 274 (275)
Q Consensus 231 l~~l~-~~~~~~~~~l~~L~~L~l~---l---~-----~lp~~l~~L~~L~~L~l~ 274 (275)
++.-- ......+..-+.|+.|+++ . + .+.+.+..=++|+.|+++
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 22100 0001134445678888884 1 1 233345555678888775
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=48.19 E-value=8.8 Score=30.05 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=27.5
Q ss_pred hHHHHHHhcCCCCCCCeEEecccCCcc-----cccccCCCCCCcEEeeecC
Q 043856 63 KDEQLLEALQPPLNVEKLWIIFYGGNI-----LPKWLTSLTNLRDLKLVFC 108 (275)
Q Consensus 63 ~~~~l~~~l~~l~~L~~L~l~~~~~~~-----lp~~l~~l~~L~~L~L~~c 108 (275)
....+-+++..-+.|+.|+|++|.... +-..+..-+.|++|+|++|
T Consensus 58 ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 58 RIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 345566677766777777777665432 2222334466777777774
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.70 E-value=91 Score=21.02 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=29.2
Q ss_pred cCcCc-cccCCCCCccEEEEecCCCCccCCccccccCCCCCcccceecc
Q 043856 207 LKALP-DYLLQTTALQELSIYSCENLEELPIPEDRRTTDIPRLSSLRIG 254 (275)
Q Consensus 207 l~~lp-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~~L~~L~l~ 254 (275)
++.|. ..+.++++|+.+.|-. .++.+.. ..+..+.+|+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~--~v~~Ig~---~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP--NIGLLYD---GMFSGCTALEKLILT 51 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT--TSSCCCT---TSSTTCTTCCCEEEC
T ss_pred cCEecHHHhcCCCCCcEEEcCC--chheEcH---HHHhccCCccEEEEc
Confidence 34443 3466789999998864 4555544 267788999988885
Done!