BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043857
(539 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A4U|B Chain B, Crystal Structure Of Mcfd2 In Complex With Carbohydrate
Recognition Domain Of Ergic-53
Length = 143
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 398 YWFRCIDLDGNGLLTPNELQYFYEEQLHRMECMAQEPVLFEDVLCQIVDMI----GPENQ 453
++F+ D DGN LL EL +H+ E Q P++ ED L I+D + N
Sbjct: 72 HYFKMHDYDGNNLLDGLELSTAIT-HVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNND 130
Query: 454 GYI 456
GYI
Sbjct: 131 GYI 133
>pdb|3LI6|A Chain A, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|D Chain D, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|G Chain G, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
pdb|3LI6|J Chain J, Crystal Structure And Trimer-Monomer Transition Of
N-Terminal Domain Of Ehcabp1 From Entamoeba Histolytica
Length = 66
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 373 GKMCYEDFVYFMLSEEDKSSEPALEYWFRCIDLDGNGLLTPNELQYFY 420
G + YE+ F+ + +E L+ F+ ID DGNG + NE FY
Sbjct: 15 GAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
>pdb|1JFJ|A Chain A, Nmr Solution Structure Of An Ef-Hand Calcium Binding
Protein From Entamoeba Histolytica
pdb|1JFK|A Chain A, Minimum Energy Representative Structure Of A Calcium Bound
Ef-hand Protein From Entamoeba Histolytica
Length = 134
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 373 GKMCYEDFVYFMLSEEDKSSEPALEYWFRCIDLDGNGLLTPNELQYFY 420
G + YE+ F+ + +E L+ F+ ID DGNG + NE FY
Sbjct: 15 GAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
>pdb|2NXQ|A Chain A, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|2NXQ|B Chain B, Crystal Structure Of Calcium Binding Protein 1 From
Entamoeba Histolytica: A Novel Arrangement Of Ef Hand
Motifs
pdb|3PX1|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3PX1|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Strontium
pdb|3QJK|A Chain A, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3QJK|B Chain B, Structure Of Calcium Binding Protein-1 From Entamoeba
Histolytica In Complex With Lead
pdb|3ULG|A Chain A, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
pdb|3ULG|B Chain B, Crystal Structure Of Calcium-Binding Protein-1 From
Entamoeba Histolytica In Complex With Barium
Length = 134
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 373 GKMCYEDFVYFMLSEEDKSSEPALEYWFRCIDLDGNGLLTPNELQYFY 420
G + YE+ F+ + +E L+ F+ ID DGNG + NE FY
Sbjct: 15 GAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
>pdb|3PM8|A Chain A, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
pdb|3PM8|B Chain B, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
Length = 197
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Query: 283 GHLTLRELKRGNLIAAMQHVDEEEDINKVLKYFSYEHFYVIYCK-----FWELDTDHDFF 337
GH+ L L+ +++ +E ++ K+ +H + F LD D+
Sbjct: 18 GHVELS----STLLKNLKNFKKENELKKIALTIIAKHLCDVEINNLRNIFIALDVDNSGT 73
Query: 338 IDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVVGKMCYEDFVYFMLSEEDKSSEPALE 397
+ + ++ G + Y+ + QV R S G++ Y DF+ + ++ +
Sbjct: 74 LSSQEILD-GLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCL 132
Query: 398 YWFRCIDLDGNGLLTPNELQYFY 420
F+ D+DGNG ++ EL+ +
Sbjct: 133 IPFKFFDIDGNGKISVEELKRIF 155
>pdb|3LCP|C Chain C, Crystal Structure Of The Carbohydrate Recognition Domain
Of Complex With Mcfd2
pdb|3LCP|D Chain D, Crystal Structure Of The Carbohydrate Recognition Domain
Of Complex With Mcfd2
Length = 93
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 387 EEDKSSEPALEYWFRCIDLDGNGLLTPNELQYFYEEQLHRMECMAQEPVLFEDVLCQIVD 446
E + S + ++F+ D DGN LL EL +H+ E Q P++ ED L I+D
Sbjct: 11 EAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAIT-HVHKEEGSEQAPLMSEDELINIID 69
Query: 447 MI----GPENQGYI 456
+ N GYI
Sbjct: 70 GVLRDDDKNNDGYI 83
>pdb|2D8N|A Chain A, Crystal Structure Of Human Recoverin At 2.2 A Resolution
Length = 207
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 363 VPRKFTSKVVGKMCYEDFVYFMLSEEDKSSEPALEYWFRCIDLDGNGLLTPNEL 416
V R F S + G + ++++V + + LE+ F D+DGNG ++ NE+
Sbjct: 76 VFRSFDSNLDGTLDFKEYVIALHXTTAGKTNQKLEWAFSLYDVDGNGTISKNEV 129
>pdb|2VRG|A Chain A, Structure Of Human Mcfd2
Length = 124
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 387 EEDKSSEPALEYWFRCIDLDGNGLLTPNELQYFYEEQLHRMECMAQEPVLFEDVLCQIVD 446
E + S + ++F+ D DGN LL EL +H+ E Q P++ ED L I+D
Sbjct: 42 EAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAIT-HVHKEEGSEQAPLMSEDELINIID 100
Query: 447 MI----GPENQGYI 456
+ N GYI
Sbjct: 101 GVLRDDDKNNDGYI 114
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 42/206 (20%)
Query: 236 DDFKPVLRELLTSHPGLEFLQST----PEFQERYAETVIYRIFYYINRSGTGHLTL---R 288
DD K ++R++LT HP L + P Q+ +ET + + T +
Sbjct: 251 DDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYSSETPTISDLPSLESAMTNIRQFQAEK 310
Query: 289 ELKRGNLI---AAMQHVDEEEDINKVLKYFSYEHFYVIYCKFWELDTDHDFFIDKENLIR 345
+L + L+ + + +DE + + ++ F +LDT++D +D++ L+R
Sbjct: 311 KLAQAALLYMASKLTTLDETKQLTEI---------------FRKLDTNNDGMLDRDELVR 355
Query: 346 YGNHALT---------------YRIVDRIFSQVPRKFTSKVVGKMCYEDFVYFMLSEEDK 390
G H I D+I S +P G + Y +F+ +
Sbjct: 356 -GYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPL-LDMDGSGSIEYSEFIASAIDRTIL 413
Query: 391 SSEPALEYWFRCIDLDGNGLLTPNEL 416
S +E F+ D DG+G ++ EL
Sbjct: 414 LSRERMERAFKMFDKDGSGKISTKEL 439
>pdb|2HET|A Chain A, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|B Chain B, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|C Chain C, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
pdb|2HET|D Chain D, Non-Myristoylated Bovine Recoverin (Truncated At
C-Terminus) With Calcium Bound To Ef-Hand 3
Length = 189
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 362 QVPRKFTSKVVGKMCYEDFVYFMLSEEDKSSEPALEYWFRCIDLDGNGLLTPNEL 416
V R F + G + ++++V + + LE+ F D+DGNG ++ NE+
Sbjct: 67 HVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEV 121
>pdb|1OMR|A Chain A, Non-Myristoylated Wild-Type Bovine Recoverin With Calcium
Bound To Ef- Hand 3
pdb|1REC|A Chain A, Three-Dimensional Structure Of Recoverin, A Calcium Sensor
In Vision
pdb|1IKU|A Chain A, Myristoylated Recoverin In The Calcium-Free State, Nmr, 22
Structures
Length = 201
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 362 QVPRKFTSKVVGKMCYEDFVYFMLSEEDKSSEPALEYWFRCIDLDGNGLLTPNEL 416
V R F + G + ++++V + + LE+ F D+DGNG ++ NE+
Sbjct: 67 HVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEV 121
>pdb|1JSA|A Chain A, Myristoylated Recoverin With Two Calciums Bound, Nmr, 24
Structures
Length = 201
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 362 QVPRKFTSKVVGKMCYEDFVYFMLSEEDKSSEPALEYWFRCIDLDGNGLLTPNEL 416
V R F + G + ++++V + + LE+ F D+DGNG ++ NE+
Sbjct: 67 HVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEV 121
>pdb|2JNX|A Chain A, Nmr Derived Solution Structure Of An Ef-Hand Calcium
Binding Protein From Entamoeba Histolytica
Length = 134
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 373 GKMCYEDFVYFMLSEEDKSSEPALEYWFRCIDLDGNGLLTPNELQYF 419
G + YE+ F+ S+ +E L+ F+ ID+DGNG + E F
Sbjct: 15 GSVSYEEVKAFVSSKRPIKNEQLLQLIFKAIDIDGNGEIDLAEFTKF 61
>pdb|2I94|A Chain A, Nmr Structure Of Recoverin Bound To Rhodopsin Kinase
Length = 202
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 362 QVPRKFTSKVVGKMCYEDFVYFMLSEEDKSSEPALEYWFRCIDLDGNGLLTPNEL 416
V R F + G + ++++V + + LE+ F D+DGNG ++ NE+
Sbjct: 68 HVFRSFDANSDGTLDFKEYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEV 122
>pdb|1OMV|A Chain A, Non-Myristoylated Bovine Recoverin (E85q Mutant) With
Calcium Bound To Ef-Hand 3
Length = 201
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 362 QVPRKFTSKVVGKMCYEDFVYFMLSEEDKSSEPALEYWFRCIDLDGNGLLTPNEL 416
V R F + G + ++ +V + + LE+ F D+DGNG ++ NE+
Sbjct: 67 HVFRSFDANSDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEV 121
>pdb|1LA3|A Chain A, Solution Structure Of Recoverin Mutant, E85q
Length = 201
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 362 QVPRKFTSKVVGKMCYEDFVYFMLSEEDKSSEPALEYWFRCIDLDGNGLLTPNEL 416
V R F + G + ++ +V + + LE+ F D+DGNG ++ NE+
Sbjct: 67 HVFRSFDANSDGTLDFKQYVIALHMTSAGKTNQKLEWAFSLYDVDGNGTISKNEV 121
>pdb|3E3R|A Chain A, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
pdb|3E3R|B Chain B, Crystal Structure And Biochemical Characterization Of
Recombinant Human Calcyphosine Delineates A Novel
Ef-hand-containing Protein Family
Length = 204
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 327 FWELDTDHDFFIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVVGKMCYEDFVYFMLS 386
F +LD D +D + R G L + V RK+ G + E+F+ +
Sbjct: 43 FRQLDRDGSRSLDADEF-RQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEFLRALRP 101
Query: 387 EEDKSSEPALEYWFRCIDLDGNGLLTPNELQYFYEEQLH 425
++ E + F +D G+G++T ++L+ Y + H
Sbjct: 102 PMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAH 140
>pdb|4DVY|P Chain P, Crystal Structure Of The Helicobacter Pylori Caga
Oncoprotein
Length = 876
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 18 LLQLPEFSQLALKS--NPHLAEELFSIWLSLPETNKLVKSLLSDAK 61
+ LP+ + LA+ S +L +L + LSL E NKL+K LS K
Sbjct: 542 VFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNK 587
>pdb|1S6I|A Chain A, Ca2+-Regulatory Region (Cld) From Soybean
Calcium-Dependent Protein Kinase-Alpha (Cdpk) In The
Presence Of Ca2+ And The Junction Domain (Jd)
Length = 188
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 23/111 (20%)
Query: 186 LFRKIDVEGTGIVTRDQFVDYWMRGNLLTKDLATRIYIILKRPDRSYLTQDDFKPVLREL 245
LF+ ID + +G +T D+ D LKR S L + + K ++
Sbjct: 15 LFKMIDTDNSGTITFDELKDG------------------LKRV-GSELMESEIKDLMDAA 55
Query: 246 LTSHPGL----EFLQSTPEFQERYAETVIYRIFYYINRSGTGHLTLRELKR 292
G EF+ +T + E + F Y ++ G+G++TL E+++
Sbjct: 56 DIDKSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQ 106
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 346 YGNHALTYRIVDRIFSQVPRKFTSKVVGKMCYEDFVYFMLSEEDKSSEPALEYWFRCIDL 405
YGN Y + V R F + G + + +F+ + E L++ F DL
Sbjct: 52 YGNF-FPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDL 110
Query: 406 DGNGLLTPNEL 416
DGNG ++ E+
Sbjct: 111 DGNGYISKAEM 121
>pdb|4G0H|A Chain A, Crystal Structure Of The N-Terminal Domain Of Helicobacter
Pylori Caga Protein
Length = 916
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 18 LLQLPEFSQLALKS--NPHLAEELFSIWLSLPETNKLVKSLLSDAK 61
+ LP+ + LA+ S +L +L + LSL E NKL+K LS K
Sbjct: 542 VFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNK 587
>pdb|4DVZ|A Chain A, Crystal Structure Of The Helicobacter Pylori Caga
Oncoprotein
Length = 569
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 18 LLQLPEFSQLALKS--NPHLAEELFSIWLSLPETNKLVKSLLSDAK 61
+ LP+ + LA+ S +L +L + LSL E NKL+K LS K
Sbjct: 282 VFNLPDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNK 327
>pdb|2SAS|A Chain A, Structure Of A Sarcoplasmic Calcium-Binding Protein From
Amphioxus Refined At 2.4 Angstroms Resolution
Length = 185
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 170 SITKEICKLPSFFSTA---LFRKIDVEGTGIVTRDQFVDYWMRGNLLTKDLATRIYIILK 226
+ K + LP++ LF+ +DV G GIV ++F +Y L D+ +Y ++
Sbjct: 91 ATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPA-VYNVIT 149
Query: 227 RPDRSYLTQDDFKPVLRELLTS 248
+ + +K + LLTS
Sbjct: 150 DGGKVTFDLNRYKELYYRLLTS 171
>pdb|2AAO|A Chain A, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
pdb|2AAO|B Chain B, Regulatory Apparatus Of Calcium Dependent Protein Kinase
From Arabidopsis Thaliana
Length = 166
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 373 GKMCYEDFVYFMLSEEDKSSEPALEYWFRCIDLDGNGLLTPNELQYFYEE 422
G + Y++F+ L E L F D DG+G +TP+ELQ EE
Sbjct: 78 GTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEE 127
>pdb|2ZRS|A Chain A, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|B Chain B, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|C Chain C, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|D Chain D, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|E Chain E, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|F Chain F, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|G Chain G, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRS|H Chain H, Crystal Structure Of Ca2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|C Chain C, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|D Chain D, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|E Chain E, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|F Chain F, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|G Chain G, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
pdb|2ZRT|H Chain H, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Length = 168
Score = 29.3 bits (64), Expect = 6.1, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 327 FWELDTDHDFFIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVVGKMCYEDFV 381
F D D+ IDK N ++ YR+ D+ + RKF + G++ ++DF+
Sbjct: 76 FRTYDRDNSGMIDK-NELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFI 129
>pdb|2LVV|A Chain A, Nmr Structure Of Tb24
Length = 226
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 8/46 (17%)
Query: 163 LQLQEFKSITKEICKLPSFF-----STALFRKIDVEGTGIVTRDQF 203
L+LQEFK + + KL + +T +F +ID G+G+VT D+F
Sbjct: 150 LELQEFK---EALPKLKEWGVDITDATTVFNEIDTNGSGVVTFDEF 192
>pdb|2ZNE|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
pdb|2ZNE|B Chain B, Crystal Structure Of Zn2+-Bound Form Of Des3-23alg-2
Complexed With Alix Abs Peptide
Length = 169
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 327 FWELDTDHDFFIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVVGKMCYEDFV 381
F D D+ IDK N ++ YR+ D+ + RKF + G++ ++DF+
Sbjct: 77 FRTYDRDNSGMIDK-NELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFI 130
>pdb|2ZN9|A Chain A, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZN9|B Chain B, Crystal Structure Of Ca2+-bound Form Of Des3-20alg-2
pdb|2ZND|A Chain A, Crystal Structure Of Ca2+-Free Form Of Des3-20alg-2
Length = 172
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 327 FWELDTDHDFFIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVVGKMCYEDFV 381
F D D+ IDK N ++ YR+ D+ + RKF + G++ ++DF+
Sbjct: 80 FRTYDRDNSGMIDK-NELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFI 133
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 373 GKMCYEDFVYFMLSEEDKSSEPALEYWFRCIDLDGNGLLTPNEL 416
G + Y +FV + + S+ LE F+ D DGNG ++ +EL
Sbjct: 405 GYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDEL 448
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 373 GKMCYEDFVYFMLSEEDKSSEPALEYWFRCIDLDGNGLLTPNELQYFY 420
G + Y +FV + + S+ LE F+ D DGNG ++ +EL +
Sbjct: 122 GYIDYSEFVTVAMDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVF 169
>pdb|3AAJ|A Chain A, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
pdb|3AAJ|B Chain B, Crystal Structure Of Ca2+-Bound Form Of
Des3-23alg-2deltagf122
Length = 167
Score = 28.5 bits (62), Expect = 9.1, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 327 FWELDTDHDFFIDKENLIRYGNHALT-YRIVDRIFSQVPRKFTSKVVGKMCYEDFV 381
F D D+ IDK L AL+ YR+ D+ + RKF + G++ ++DF+
Sbjct: 77 FRTYDRDNSGMIDKNEL----KQALSGYRLSDQFHDILIRKFDRQGRGQIAFDDFI 128
>pdb|3AAK|A Chain A, Crystal Structure Of Zn2+-Bound Form Of Des3-20alg-2f122a
Length = 172
Score = 28.5 bits (62), Expect = 9.3, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 327 FWELDTDHDFFIDKENLIRYGNHALTYRIVDRIFSQVPRKFTSKVVGKMCYEDFV 381
F D D+ IDK N ++ YR+ D+ + RKF + G++ ++DF+
Sbjct: 80 FRTYDRDNSGMIDK-NELKQALSGAGYRLSDQFHDILIRKFDRQGRGQIAFDDFI 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,224,812
Number of Sequences: 62578
Number of extensions: 685328
Number of successful extensions: 1639
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1581
Number of HSP's gapped (non-prelim): 77
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)