BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043859
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 329 bits (844), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 186/479 (38%), Positives = 284/479 (59%), Gaps = 23/479 (4%)
Query: 1 MESSSSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQ--TSAAESKILQS 58
ME S + PH ++ SPG+GH+IP++E KRLV L+ VT FV+A + S A+ +L S
Sbjct: 1 MEESKT-PHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVT-FVIAGEGPPSKAQRTVLDS 58
Query: 59 AMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKPAFRSAISAL---KTTPTALI 115
SS + +P D++ L + + IS+ + P R + PTAL+
Sbjct: 59 LPSS--ISSVFLPPVDLTDLSS-STRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALV 115
Query: 116 VDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVVQNESFNIPGCR 175
VDLFGT++ +A E +P Y++ T A ++ F++ P LD+TV ++ E +PGC
Sbjct: 116 VDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCV 175
Query: 176 PLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRI 235
P+ +D +DP DR + Y +H + ++GILVNT+ +L+P A+ AL++ +
Sbjct: 176 PVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPG----L 231
Query: 236 TKVPIYTVGPII---RRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAW 292
K P+Y VGP++ ++ +E WLD QP SVLYVSFGSGGTLT EQ+ ELA
Sbjct: 232 DKPPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELAL 291
Query: 293 GLELSQQRFIWVVRLPNETTGDGSFFTAXXXXXXXXXXXXXXXXXXXRTLDIGVVVPQWA 352
GL S+QRF+WV+R P+ + S+F + RT G V+P WA
Sbjct: 292 GLADSEQRFLWVIRSPS-GIANSSYFDSHSQTDPLTFLPPGFLE---RTKKRGFVIPFWA 347
Query: 353 PQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSK 412
PQ +L+HPS GGFL+HCGWNSTLES+ +G+P+I WPLY+EQ+MNA +L+E++ A+R +
Sbjct: 348 PQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPR 407
Query: 413 VLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLA 471
G+V REE+ +V+ ++ EEG +R K+KEL+ +A + ++ G+S +L+ +A
Sbjct: 408 A-GDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRV-LKDDGTSTKALSLVA 464
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 136/492 (27%), Positives = 238/492 (48%), Gaps = 53/492 (10%)
Query: 1 MESSSSKPHAVLLASPGVGHVIPVLELGKRLVTL-YNFQVTIFVVASQTSAAESKILQSA 59
M + + + +PG+GH+ LE K L N +T+F + ++S
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV 62
Query: 60 MSSK----LCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKPAFRSAISALKTTPTALI 115
++S+ L + E+ P L P+ ++T + ++ +K ++ +S L+
Sbjct: 63 LASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILS---NKVVGLV 119
Query: 116 VDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVVQNES-----FN 170
+D F + + E IP Y+++ +N ++L + K Q + V + N
Sbjct: 120 LDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSL----KNRQIEEVFDDSDRDHQLLN 175
Query: 171 IPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDK 230
IPG P +V+ + Y Y + E + GI+VNT+ DL+ +++ AL D
Sbjct: 176 IPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD 235
Query: 231 SLGRITKVPIYTVGPIIRRLG------PAGSWNELFDWLDKQPSESVLYVSFGSGG-TLT 283
+I PIY VGP++ G + + WLD+QP +SV+++ FGS G +
Sbjct: 236 E--KIP--PIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFG 291
Query: 284 YEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAXXXXXXXXXXXXXXXXXXXRTLD 343
QI E+A GL+ S RF+W + +G L+
Sbjct: 292 PSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFL--------------------EWMELE 331
Query: 344 IGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTE 403
++ WAPQ+++L+H ++GGF+SHCGWNS LES+ GVP++ WP+Y+EQ++NA L +
Sbjct: 332 GKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK 391
Query: 404 ELGVAIRSKVLPSKG--VVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESG 461
E GV + +V KG VV EEI+ ++ L+D++ + KV+E++ ++ A + G
Sbjct: 392 EWGVGLGLRVDYRKGSDVVAAEEIEKGLKD-LMDKDSI-VHKKVQEMKEMSRNA-VVDGG 448
Query: 462 SSYSSLARLAKE 473
SS S+ +L +
Sbjct: 449 SSLISVGKLIDD 460
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 136/492 (27%), Positives = 238/492 (48%), Gaps = 53/492 (10%)
Query: 1 MESSSSKPHAVLLASPGVGHVIPVLELGKRLVTL-YNFQVTIFVVASQTSAAESKILQSA 59
M + + + +PG+GH+ LE K L N +T+F + ++S
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV 62
Query: 60 MSSK----LCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKPAFRSAISALKTTPTALI 115
++S+ L + E+ P L P+ ++T + ++ +K ++ +S L+
Sbjct: 63 LASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILS---NKVVGLV 119
Query: 116 VDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVVQNES-----FN 170
+D F + + E IP Y+++ +N ++L + K Q + V + N
Sbjct: 120 LDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSL----KNRQIEEVFDDSDRDHQLLN 175
Query: 171 IPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDK 230
IPG P +V+ + Y Y + E + GI+VNT+ DL+ +++ AL D
Sbjct: 176 IPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD 235
Query: 231 SLGRITKVPIYTVGPIIRRLG------PAGSWNELFDWLDKQPSESVLYVSFGSGG-TLT 283
+I PIY VGP++ G + + WLD+QP +SV+++ FGS G +
Sbjct: 236 E--KIP--PIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFG 291
Query: 284 YEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAXXXXXXXXXXXXXXXXXXXRTLD 343
QI E+A GL+ S RF+W + +G L+
Sbjct: 292 PSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFL--------------------EWMELE 331
Query: 344 IGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTE 403
++ WAPQ+++L+H ++GGF+SHCGWNS LES+ GVP++ WP+Y+EQ++NA L +
Sbjct: 332 GKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVK 391
Query: 404 ELGVAIRSKVLPSKG--VVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESG 461
E GV + +V KG VV EEI+ ++ L+D++ + KV+E++ ++ A + G
Sbjct: 392 EWGVGLGLRVDYRKGSDVVAAEEIEKGLKD-LMDKDSI-VHKKVQEMKEMSRNA-VVDGG 448
Query: 462 SSYSSLARLAKE 473
SS S+ +L +
Sbjct: 449 SSLISVGKLIDD 460
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 142/520 (27%), Positives = 244/520 (46%), Gaps = 84/520 (16%)
Query: 4 SSSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSK 63
++ KPH V++ P GH+ P+ +L K L+ L F +T FV T ++L+S
Sbjct: 5 ANRKPHVVMIPYPVQGHINPLFKLAK-LLHLRGFHIT-FV---NTEYNHKRLLKSRGPKA 59
Query: 64 LCHVIEIPAPDISGLVDP---DAAVVTIISVIMREIKPAFRSAISALKT-------TP-- 111
+ I + P D V + + + ++ F L T P
Sbjct: 60 FDGFTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPV 119
Query: 112 TALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYA----------PTLDKTVQGQ 161
T L+ D + ++ AEE ++P +Y ++A C L V P D++
Sbjct: 120 TCLVSDCCMSFTIQAAEEFELPNVLYFSSSA-CSLLNVMHFRSFVERGIIPFKDESYLTN 178
Query: 162 YVVQNESFNIPGCRPLRPEDVVDPMLDRTNQQYFE---YVHIGEEIPLSDGILVNTWEDL 218
++ + IPG + R +D+VD + TN ++ + + + IL+NT+ +L
Sbjct: 179 GCLETKVDWIPGLKNFRLKDIVD-FIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNEL 237
Query: 219 QPTALTALRDDKSLGRITKVP-IYTVGPI---------IRRLGPAGS--WNE---LFDWL 263
+ + AL + +P IY +GP+ I +L S W E DWL
Sbjct: 238 ESDVINALS--------STIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWL 289
Query: 264 DKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAXXX 323
+ + SV+YV+FGS +T EQ+ E AWGL ++ F+W++R P+ G F++
Sbjct: 290 ESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR-PDLVIGGSVIFSSEFT 348
Query: 324 XXXXXXXXXXXXXXXXRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGV 383
D G++ W PQ +L+HPS+GGFL+HCGWNST ESI GV
Sbjct: 349 N---------------EIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGV 392
Query: 384 PMIVWPLYSEQRMNATILTE--ELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEI 441
PM+ WP +++Q + + E+G+ I + V REE+ ++ ++ ++G ++
Sbjct: 393 PMLCWPFFADQPTDCRFICNEWEIGMEIDTN-------VKREELAKLINEVIAGDKGKKM 445
Query: 442 RAKVKELQRSAQKAWTRESGSSYSSLARLAKECGMMTKRN 481
+ K EL++ A++ TR G SY +L ++ K+ ++ K+N
Sbjct: 446 KQKAMELKKKAEEN-TRPGGCSYMNLNKVIKD--VLLKQN 482
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 119/470 (25%), Positives = 213/470 (45%), Gaps = 53/470 (11%)
Query: 1 MESSSSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAM 60
M +++ PH +LA P H P+L + +RL V F SQ++A+ I +M
Sbjct: 1 MSQTTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNAS---IFHDSM 57
Query: 61 SSKLCHVIEIPAPDISGLVDPDAAVVT-----IISVIMREIKPAFRS----AISALKTTP 111
+ C+ I + DIS V P+ V I + R +FR A++
Sbjct: 58 HTMQCN---IKSYDISDGV-PEGYVFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPV 113
Query: 112 TALIVDLFGTESLAIAEELQIP--KYVYVGTNAWCVALFVYAPTLDKTVQGQYVVQNESF 169
+ L+ D F + +A E+ + + G N+ +++ V G ++E
Sbjct: 114 SCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELL 173
Query: 170 N-IPGCRPLRPEDVVDPM-LDRTNQQYFEYVH-IGEEIPLSDGILVNTWEDLQPTALTAL 226
N IPG +R D+ + + N + +H +G+ +P + + +N++E+L + L
Sbjct: 174 NFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDL 233
Query: 227 RDD-KSLGRITKVPIYTVGPIIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYE 285
+ K+ I + T P++ WL ++ SV+Y+SFG+ T
Sbjct: 234 KSKLKTYLNIGPFNLITPPPVVPNT------TGCLQWLKERKPTSVVYISFGTVTTPPPA 287
Query: 286 QITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAXXXXXXXXXXXXXXXXXXXRTLDIG 345
++ L+ LE S+ FIW +R F +T G
Sbjct: 288 EVVALSEALEASRVPFIWSLRDKARVHLPEGFL--------------------EKTRGYG 327
Query: 346 VVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEEL 405
+VVP WAPQ ++L+H +VG F++HCGWNS ES+ GVP+I P + +QR+N ++ + L
Sbjct: 328 MVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVL 386
Query: 406 GVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKA 455
+ +R + GV + + + +IL E+G ++R ++ L+ +A +A
Sbjct: 387 EIGVRIE----GGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRA 432
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 114/400 (28%), Positives = 179/400 (44%), Gaps = 47/400 (11%)
Query: 80 DPDAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVG 139
+P + I + K A++ T L+ D F +AEE+ K+V +
Sbjct: 87 NPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMH-AKWVPLW 145
Query: 140 TNA-WCVALFVYAPTLDKTVQGQYVVQNESFNI-PGCRPLRPEDVVDPMLDRTNQQYFEY 197
T + VY + + + V +S ++ PG L+ D+ + ++ + +
Sbjct: 146 TAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATM 205
Query: 198 VH-IGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKVPIYTVGPIIRRLGPAGSW 256
+H +G E+P ++ + +N++ + P L L + VGP
Sbjct: 206 LHKMGLELPRANAVAINSFATIHPLIENELNSKFKL-------LLNVGPFNLTTPQRKVS 258
Query: 257 NE--LFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVR-LPNETTG 313
+E +WLD+ + SV+Y+SFGS T ++T LA LE FIW R P E
Sbjct: 259 DEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLP 318
Query: 314 DGSFFTAXXXXXXXXXXXXXXXXXXXRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWN 373
G RT G +V WAPQ++IL H SVG FL+H GWN
Sbjct: 319 KGFL---------------------ERTKTKGKIV-AWAPQVEILKHSSVGVFLTHSGWN 356
Query: 374 STLESITNGVPMIVWPLYSEQRMNATILTE---ELGVAIRSKVLPSKGVVGREEIKTMVR 430
S LE I GVPMI P + +Q +N TILTE E+GV + + GV+ +E IK +
Sbjct: 357 SVLECIVGGVPMISRPFFGDQGLN-TILTESVLEIGVGVDN------GVLTKESIKKALE 409
Query: 431 RILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARL 470
+ E+G +R K+ +L+ SA KA ++G+S L
Sbjct: 410 LTMSSEKGGIMRQKIVKLKESAFKA-VEQNGTSAMDFTTL 448
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 7/66 (10%)
Query: 343 DIGVVVP-----QWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMN 397
D+G V P QW PQ+DIL+ S F++H G ST+E+++N VPM+ P +EQ MN
Sbjct: 299 DLGEVPPNVEVHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMN 356
Query: 398 ATILTE 403
A + E
Sbjct: 357 AERIVE 362
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 341 TLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATI 400
TL + + +W PQ D+L HP F++H G N E+I +G+P + PL+++Q N
Sbjct: 65 TLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIA- 123
Query: 401 LTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQR 450
+ G A+R ++ ++R++ D E K+ +Q
Sbjct: 124 HXKARGAAVRVDF----NTXSSTDLLNALKRVINDPSYKENVXKLSRIQH 169
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 346 VVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEEL 405
V V W PQ+ IL + F++H G + E + PMI P +Q NA +L + L
Sbjct: 285 VEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML-QGL 341
Query: 406 GVAIRSKVLPSKGVVGRE---------EIKTMVRRILVD--EEGYEIRA 443
GVA + + + RE E+ +RRI + +EG RA
Sbjct: 342 GVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRA 390
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 346 VVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEEL 405
V V +W P +L + + H G + L ++ GVP V P S Q N +LT L
Sbjct: 290 VRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT-GL 346
Query: 406 GVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKA 455
G+ ++ G +G E+ + ++ + E +R ++ E+ A+ A
Sbjct: 347 GIGFDAEA----GSLGAEQCRRLLDDAGLREAALRVRQEMSEMPPPAETA 392
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 346 VVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEEL 405
V V +W P +L + + H G + L ++ GVP V P S Q N +LT L
Sbjct: 290 VRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT-GL 346
Query: 406 GVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKA 455
G+ ++ G +G E+ + ++ + E +R ++ E+ A+ A
Sbjct: 347 GIGFDAEA----GSLGAEQCRRLLDDAGLREAALRVRQEMSEMPPPAETA 392
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 22 IPVLELGKRLVTLY--NFQVTIFVVASQTSAAESKI 55
IP LEL K+LVT NFQ +F S T A E+ I
Sbjct: 86 IPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASI 121
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 350 QWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGV 407
QW P +L+H L+H + LE+ GVP+++ P ++ + + ELG+
Sbjct: 287 QWIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGL 342
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 351 WAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWP 389
W PQ +L H V + H G +TL ++ GVP + +P
Sbjct: 299 WVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFP 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,469,102
Number of Sequences: 62578
Number of extensions: 537495
Number of successful extensions: 1328
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1295
Number of HSP's gapped (non-prelim): 21
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)