Query 043859
Match_columns 484
No_of_seqs 133 out of 1427
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:58:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02992 coniferyl-alcohol glu 100.0 5.3E-69 1.2E-73 536.4 45.5 464 7-479 5-472 (481)
2 PLN03015 UDP-glucosyl transfer 100.0 8E-67 1.7E-71 517.6 44.7 463 5-475 1-467 (470)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 6.6E-66 1.4E-70 513.9 45.2 438 1-477 1-451 (451)
4 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.1E-65 2.5E-70 515.8 44.4 447 1-478 1-473 (477)
5 PLN00164 glucosyltransferase; 100.0 2E-65 4.4E-70 515.7 46.0 458 5-477 1-474 (480)
6 PLN02555 limonoid glucosyltran 100.0 2.6E-65 5.7E-70 511.3 45.1 450 1-477 1-470 (480)
7 PLN02207 UDP-glycosyltransfera 100.0 3.6E-64 7.8E-69 500.8 46.5 445 5-477 1-466 (468)
8 PLN02210 UDP-glucosyl transfer 100.0 2.5E-64 5.5E-69 504.6 43.9 433 1-475 1-454 (456)
9 PLN02534 UDP-glycosyltransfera 100.0 5.2E-64 1.1E-68 502.5 45.9 446 4-476 5-486 (491)
10 PLN02173 UDP-glucosyl transfer 100.0 4.2E-64 9.1E-69 498.6 44.6 422 6-475 4-447 (449)
11 PLN03004 UDP-glycosyltransfera 100.0 3.3E-64 7.1E-69 499.6 40.1 438 5-465 1-450 (451)
12 PLN02208 glycosyltransferase f 100.0 1.4E-63 3.1E-68 495.9 42.8 422 6-477 3-440 (442)
13 PLN02670 transferase, transfer 100.0 2E-63 4.4E-68 495.9 43.1 441 5-481 4-470 (472)
14 PLN02562 UDP-glycosyltransfera 100.0 4.8E-63 1E-67 495.0 44.0 427 6-475 5-448 (448)
15 PLN03007 UDP-glucosyltransfera 100.0 8.7E-63 1.9E-67 499.4 46.0 442 6-477 4-481 (482)
16 PLN02554 UDP-glycosyltransfera 100.0 7.5E-63 1.6E-67 499.1 44.6 448 7-478 2-480 (481)
17 PLN02152 indole-3-acetate beta 100.0 1.8E-62 3.9E-67 487.7 43.9 434 5-474 1-454 (455)
18 PLN02448 UDP-glycosyltransfera 100.0 2.1E-62 4.5E-67 494.2 44.0 434 3-476 6-457 (459)
19 PLN00414 glycosyltransferase f 100.0 3.2E-62 7E-67 486.8 42.0 421 5-478 2-442 (446)
20 PLN02764 glycosyltransferase f 100.0 5.6E-62 1.2E-66 481.7 42.9 427 6-481 4-450 (453)
21 PLN02167 UDP-glycosyltransfera 100.0 8.5E-62 1.8E-66 490.7 43.4 447 5-476 1-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 2.6E-47 5.6E-52 386.9 28.6 387 8-453 21-447 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 9.9E-49 2.1E-53 404.1 -3.2 381 9-453 2-424 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.3E-42 2.9E-47 347.5 23.9 358 13-453 1-374 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.1E-41 2.4E-46 342.3 25.7 369 8-453 1-386 (401)
26 COG1819 Glycosyl transferases, 100.0 6.8E-41 1.5E-45 331.2 23.5 387 7-473 1-397 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 4.5E-40 9.8E-45 339.7 19.8 406 7-453 5-437 (496)
28 PRK12446 undecaprenyldiphospho 100.0 8.9E-27 1.9E-31 227.7 26.4 323 9-447 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.9E-24 4.2E-29 210.3 25.5 303 8-432 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 4.7E-23 1E-27 199.0 27.4 313 8-436 1-325 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 3.9E-22 8.5E-27 193.7 26.2 304 9-437 1-316 (321)
32 PRK00726 murG undecaprenyldiph 99.8 3.7E-18 8E-23 168.9 30.3 344 8-474 2-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.1E-16 2.3E-21 158.1 29.2 316 9-437 1-326 (350)
34 TIGR01133 murG undecaprenyldip 99.7 1.9E-15 4.2E-20 148.9 28.3 312 8-437 1-323 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 2.4E-16 5.1E-21 156.5 20.6 350 8-471 6-383 (385)
36 PRK13609 diacylglycerol glucos 99.7 5.5E-15 1.2E-19 147.5 25.3 352 6-475 3-370 (380)
37 TIGR03590 PseG pseudaminic aci 99.7 7E-15 1.5E-19 139.3 21.3 255 17-400 13-278 (279)
38 PRK13608 diacylglycerol glucos 99.6 4.6E-14 1E-18 140.9 23.6 169 267-478 200-373 (391)
39 COG4671 Predicted glycosyl tra 99.6 4.1E-14 8.8E-19 130.6 20.7 334 6-435 8-365 (400)
40 PRK00025 lpxB lipid-A-disaccha 99.6 7.1E-14 1.5E-18 139.5 21.1 318 7-437 1-343 (380)
41 TIGR03492 conserved hypothetic 99.5 3.7E-12 8E-17 126.7 27.0 325 17-437 6-366 (396)
42 PF04101 Glyco_tran_28_C: Glyc 99.5 1.8E-15 3.9E-20 132.5 -1.0 87 344-437 55-146 (167)
43 PLN02605 monogalactosyldiacylg 99.5 3E-11 6.6E-16 120.4 25.8 81 344-435 265-347 (382)
44 PF03033 Glyco_transf_28: Glyc 99.3 2E-12 4.2E-17 109.6 7.5 119 10-141 1-131 (139)
45 PLN02871 UDP-sulfoquinovose:DA 99.2 5.5E-09 1.2E-13 107.1 27.0 138 271-447 264-413 (465)
46 cd03814 GT1_like_2 This family 99.2 1.2E-08 2.5E-13 100.6 28.4 81 344-437 247-334 (364)
47 COG3980 spsG Spore coat polysa 99.2 2.6E-09 5.7E-14 96.2 19.1 282 8-437 1-295 (318)
48 PRK10307 putative glycosyl tra 99.1 1.8E-07 3.9E-12 94.5 30.3 119 344-480 284-411 (412)
49 cd03794 GT1_wbuB_like This fam 99.1 1.9E-07 4.2E-12 92.5 29.0 82 343-437 274-367 (394)
50 cd03823 GT1_ExpE7_like This fa 99.1 2.9E-07 6.2E-12 90.4 29.9 82 343-437 242-331 (359)
51 cd03808 GT1_cap1E_like This fa 99.1 4.6E-07 9.9E-12 88.6 30.8 319 9-437 1-331 (359)
52 cd04962 GT1_like_5 This family 99.1 2.7E-07 5.9E-12 91.6 29.3 81 344-437 253-338 (371)
53 PRK05749 3-deoxy-D-manno-octul 99.0 1.9E-07 4.2E-12 94.6 27.8 73 355-437 314-390 (425)
54 cd03800 GT1_Sucrose_synthase T 99.0 2.1E-07 4.6E-12 93.2 27.3 81 344-437 283-370 (398)
55 cd03818 GT1_ExpC_like This fam 99.0 1.2E-06 2.6E-11 88.0 30.0 84 343-437 280-368 (396)
56 cd03817 GT1_UGDG_like This fam 99.0 8.8E-07 1.9E-11 87.3 28.5 80 344-437 259-345 (374)
57 cd03816 GT1_ALG1_like This fam 99.0 1.9E-06 4.1E-11 87.0 30.5 123 6-139 2-129 (415)
58 TIGR00236 wecB UDP-N-acetylglu 98.9 2.1E-07 4.5E-12 92.4 22.9 319 8-437 1-336 (365)
59 PF04007 DUF354: Protein of un 98.9 1.4E-06 3E-11 83.8 25.9 111 8-139 1-111 (335)
60 cd03801 GT1_YqgM_like This fam 98.9 1.3E-06 2.8E-11 85.6 26.7 82 343-437 255-343 (374)
61 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 3E-07 6.4E-12 91.2 20.5 133 268-437 197-339 (363)
62 cd03825 GT1_wcfI_like This fam 98.9 3.8E-06 8.2E-11 83.0 28.2 80 345-437 245-332 (365)
63 cd03798 GT1_wlbH_like This fam 98.8 6E-06 1.3E-10 81.1 29.3 84 343-437 258-346 (377)
64 cd03796 GT1_PIG-A_like This fa 98.8 4.2E-06 9E-11 84.1 27.7 115 344-480 250-371 (398)
65 cd03805 GT1_ALG2_like This fam 98.8 1.2E-05 2.7E-10 80.4 31.1 90 344-447 280-377 (392)
66 cd03795 GT1_like_4 This family 98.8 6.2E-06 1.3E-10 81.2 26.5 84 343-437 243-334 (357)
67 cd03820 GT1_amsD_like This fam 98.8 1.7E-05 3.8E-10 77.0 29.2 81 344-437 235-321 (348)
68 PRK14089 ipid-A-disaccharide s 98.7 5.5E-07 1.2E-11 87.3 17.6 100 354-468 229-342 (347)
69 TIGR03449 mycothiol_MshA UDP-N 98.7 5.9E-05 1.3E-09 75.9 33.2 91 344-447 283-381 (405)
70 PRK01021 lpxB lipid-A-disaccha 98.6 8.8E-06 1.9E-10 83.0 23.2 202 238-471 381-603 (608)
71 cd03819 GT1_WavL_like This fam 98.6 6.4E-05 1.4E-09 73.9 29.3 95 344-449 246-346 (355)
72 cd03821 GT1_Bme6_like This fam 98.6 3.7E-05 7.9E-10 75.7 27.5 82 343-437 261-347 (375)
73 cd03799 GT1_amsK_like This is 98.6 3.5E-05 7.6E-10 75.7 27.2 83 344-437 236-329 (355)
74 PRK09922 UDP-D-galactose:(gluc 98.6 1.4E-05 3.1E-10 79.1 24.0 97 343-451 235-343 (359)
75 cd03802 GT1_AviGT4_like This f 98.6 2E-05 4.4E-10 76.8 24.1 80 343-435 223-308 (335)
76 cd05844 GT1_like_7 Glycosyltra 98.5 0.00012 2.5E-09 72.5 28.3 81 344-437 245-338 (367)
77 TIGR02472 sucr_P_syn_N sucrose 98.5 0.00012 2.6E-09 74.5 28.9 81 344-437 317-408 (439)
78 cd03822 GT1_ecORF704_like This 98.5 0.0002 4.3E-09 70.4 29.5 80 344-437 247-336 (366)
79 PF02684 LpxB: Lipid-A-disacch 98.5 1.3E-05 2.7E-10 78.4 20.2 195 238-465 153-366 (373)
80 COG1519 KdtA 3-deoxy-D-manno-o 98.5 5.6E-05 1.2E-09 73.1 23.8 330 9-451 50-403 (419)
81 cd03811 GT1_WabH_like This fam 98.5 4.3E-05 9.3E-10 74.3 24.1 81 344-437 246-334 (353)
82 cd03812 GT1_CapH_like This fam 98.5 0.00014 3E-09 71.6 26.9 80 344-437 249-333 (358)
83 cd03807 GT1_WbnK_like This fam 98.5 0.00062 1.4E-08 66.5 30.6 79 344-437 251-334 (365)
84 cd04951 GT1_WbdM_like This fam 98.4 0.0002 4.4E-09 70.4 26.4 77 344-435 245-326 (360)
85 PF02350 Epimerase_2: UDP-N-ac 98.4 3E-06 6.5E-11 82.8 12.8 300 29-436 1-319 (346)
86 PLN02846 digalactosyldiacylgly 98.4 0.00054 1.2E-08 69.1 28.4 73 348-436 288-364 (462)
87 TIGR02468 sucrsPsyn_pln sucros 98.4 0.0018 3.9E-08 70.8 33.8 93 344-447 548-650 (1050)
88 cd04955 GT1_like_6 This family 98.4 0.00037 8E-09 68.7 26.5 106 343-472 247-360 (363)
89 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 0.0003 6.5E-09 69.6 24.6 321 8-434 1-338 (365)
90 TIGR02149 glgA_Coryne glycogen 98.3 0.0011 2.4E-08 66.2 28.7 117 345-476 261-386 (388)
91 KOG3349 Predicted glycosyltran 98.3 1.9E-06 4.1E-11 70.2 6.8 115 271-411 5-132 (170)
92 TIGR03088 stp2 sugar transfera 98.3 0.00088 1.9E-08 66.6 27.7 80 345-437 256-340 (374)
93 COG0763 LpxB Lipid A disacchar 98.3 0.00019 4.2E-09 68.8 21.2 202 240-474 158-379 (381)
94 PLN02275 transferase, transfer 98.3 0.0018 4E-08 64.3 28.9 75 344-433 286-371 (371)
95 TIGR03087 stp1 sugar transfera 98.2 0.00097 2.1E-08 67.0 26.5 80 343-437 279-364 (397)
96 PRK15427 colanic acid biosynth 98.2 0.0033 7.2E-08 63.2 29.6 112 344-475 279-404 (406)
97 COG0381 WecB UDP-N-acetylgluco 98.2 0.0008 1.7E-08 64.8 22.5 320 6-437 2-343 (383)
98 TIGR02470 sucr_synth sucrose s 98.2 0.0098 2.1E-07 63.6 32.8 132 7-140 255-417 (784)
99 PRK00654 glgA glycogen synthas 98.1 0.00097 2.1E-08 68.4 24.1 106 356-477 352-463 (466)
100 PLN00142 sucrose synthase 98.1 0.0017 3.7E-08 69.3 25.5 113 26-140 319-440 (815)
101 PRK15179 Vi polysaccharide bio 98.1 0.021 4.6E-07 60.8 33.6 81 344-435 574-659 (694)
102 cd03809 GT1_mtfB_like This fam 98.1 0.00092 2E-08 65.7 22.4 80 343-437 252-338 (365)
103 cd03792 GT1_Trehalose_phosphor 98.0 0.0061 1.3E-07 60.5 26.9 110 344-475 252-370 (372)
104 PLN02949 transferase, transfer 98.0 0.014 3E-07 59.6 29.5 118 343-480 334-460 (463)
105 PLN02316 synthase/transferase 97.9 0.025 5.5E-07 62.2 30.0 107 356-476 915-1033(1036)
106 cd03806 GT1_ALG11_like This fa 97.7 0.01 2.3E-07 59.9 22.9 80 344-437 305-394 (419)
107 TIGR02095 glgA glycogen/starch 97.7 0.047 1E-06 56.2 27.4 108 345-475 347-471 (473)
108 cd03791 GT1_Glycogen_synthase_ 97.6 0.056 1.2E-06 55.7 27.3 114 344-473 351-473 (476)
109 COG5017 Uncharacterized conser 97.6 0.00053 1.2E-08 55.1 8.7 83 346-434 48-141 (161)
110 PF13844 Glyco_transf_41: Glyc 97.6 0.00084 1.8E-08 67.2 11.8 141 267-437 282-432 (468)
111 cd04950 GT1_like_1 Glycosyltra 97.6 0.1 2.2E-06 51.9 26.9 80 343-437 253-342 (373)
112 cd04946 GT1_AmsK_like This fam 97.5 0.0014 3.1E-08 66.0 13.7 112 343-471 288-406 (407)
113 cd03813 GT1_like_3 This family 97.4 0.12 2.5E-06 53.3 25.4 81 344-437 354-444 (475)
114 PLN02501 digalactosyldiacylgly 97.3 0.14 3E-06 53.8 24.4 76 346-437 603-683 (794)
115 cd03804 GT1_wbaZ_like This fam 97.3 0.0019 4.2E-08 63.5 10.6 126 273-436 198-327 (351)
116 PRK10125 putative glycosyl tra 97.2 0.11 2.4E-06 52.2 22.7 38 8-46 1-40 (405)
117 PRK15484 lipopolysaccharide 1, 97.2 0.016 3.4E-07 57.9 16.1 82 344-437 257-346 (380)
118 cd04949 GT1_gtfA_like This fam 97.2 0.068 1.5E-06 52.9 20.4 96 344-449 261-360 (372)
119 PF13692 Glyco_trans_1_4: Glyc 97.1 0.0018 3.9E-08 53.9 6.9 79 344-435 53-135 (135)
120 PF00534 Glycos_transf_1: Glyc 97.0 0.0023 4.9E-08 55.8 7.5 81 344-437 73-160 (172)
121 COG1817 Uncharacterized protei 97.0 0.33 7.1E-06 45.5 24.8 108 14-140 6-113 (346)
122 TIGR02193 heptsyl_trn_I lipopo 96.8 0.093 2E-06 50.9 17.7 106 9-133 1-108 (319)
123 cd01635 Glycosyltransferase_GT 96.7 0.23 5.1E-06 44.6 18.3 49 344-394 161-217 (229)
124 PRK09814 beta-1,6-galactofuran 96.5 0.016 3.5E-07 56.6 9.8 109 344-472 207-331 (333)
125 PRK14099 glycogen synthase; Pr 96.4 1.5 3.2E-05 45.3 24.5 116 347-480 354-482 (485)
126 PF13477 Glyco_trans_4_2: Glyc 96.3 0.073 1.6E-06 44.4 11.5 102 9-138 1-106 (139)
127 PF06722 DUF1205: Protein of u 96.3 0.0063 1.4E-07 47.2 4.3 54 255-308 26-84 (97)
128 TIGR02918 accessory Sec system 96.1 0.17 3.8E-06 52.2 15.1 98 344-449 376-481 (500)
129 KOG4626 O-linked N-acetylgluco 95.8 0.088 1.9E-06 53.5 10.7 122 267-411 756-887 (966)
130 PF01975 SurE: Survival protei 95.8 0.027 5.8E-07 50.1 6.5 121 8-140 1-134 (196)
131 COG3914 Spy Predicted O-linked 95.8 0.24 5.2E-06 50.2 13.6 121 267-411 427-560 (620)
132 PF06258 Mito_fiss_Elm1: Mitoc 95.4 2.8 6E-05 40.3 19.2 57 353-412 221-281 (311)
133 PRK15490 Vi polysaccharide bio 95.1 4.8 0.0001 41.8 29.3 62 344-412 455-521 (578)
134 PF13579 Glyco_trans_4_4: Glyc 94.9 0.064 1.4E-06 45.4 5.9 97 23-139 6-104 (160)
135 PRK10017 colanic acid biosynth 94.7 0.81 1.7E-05 46.1 14.0 101 356-476 323-424 (426)
136 PHA01633 putative glycosyl tra 94.2 0.74 1.6E-05 44.7 12.1 83 345-435 202-307 (335)
137 PF13524 Glyco_trans_1_2: Glyc 94.2 0.28 6.1E-06 37.5 7.6 82 369-471 9-91 (92)
138 TIGR02201 heptsyl_trn_III lipo 94.1 2.8 6.2E-05 41.0 16.3 106 9-136 1-108 (344)
139 cd03789 GT1_LPS_heptosyltransf 94.0 5.6 0.00012 37.5 19.0 102 9-135 1-104 (279)
140 PRK02261 methylaspartate mutas 93.7 0.2 4.3E-06 41.8 6.2 53 5-58 1-53 (137)
141 PRK14098 glycogen synthase; Pr 93.2 1.9 4E-05 44.6 13.8 118 344-477 362-486 (489)
142 PF13439 Glyco_transf_4: Glyco 92.9 0.59 1.3E-05 40.2 8.4 100 17-141 11-111 (177)
143 TIGR02195 heptsyl_trn_II lipop 92.8 10 0.00022 36.9 18.4 102 9-135 1-104 (334)
144 PRK13932 stationary phase surv 92.2 1.9 4.1E-05 40.0 10.8 42 4-48 2-43 (257)
145 COG0496 SurE Predicted acid ph 92.2 0.97 2.1E-05 41.5 8.7 110 8-139 1-125 (252)
146 PF08660 Alg14: Oligosaccharid 91.0 4.9 0.00011 34.9 11.6 119 12-139 2-129 (170)
147 PF12000 Glyco_trans_4_3: Gkyc 89.9 1.2 2.7E-05 38.5 6.9 32 108-139 64-96 (171)
148 cd02067 B12-binding B12 bindin 89.2 0.87 1.9E-05 36.8 5.2 48 9-57 1-48 (119)
149 PHA01630 putative group 1 glyc 89.0 1.2 2.5E-05 43.5 6.9 111 351-474 197-328 (331)
150 COG0859 RfaF ADP-heptose:LPS h 88.9 24 0.00052 34.4 16.8 105 7-136 1-107 (334)
151 COG4370 Uncharacterized protei 88.9 1.2 2.7E-05 41.6 6.4 89 348-449 299-390 (412)
152 PRK13933 stationary phase surv 88.4 4.8 0.0001 37.3 10.0 38 8-48 1-38 (253)
153 PRK13934 stationary phase surv 88.2 5.4 0.00012 37.2 10.2 38 8-48 1-38 (266)
154 COG1703 ArgK Putative periplas 87.5 9 0.0002 36.2 11.1 114 5-136 49-171 (323)
155 PLN02939 transferase, transfer 87.1 11 0.00025 41.6 13.2 117 344-478 837-968 (977)
156 PRK13935 stationary phase surv 87.0 3 6.4E-05 38.6 7.7 38 8-48 1-38 (253)
157 TIGR00087 surE 5'/3'-nucleotid 86.7 6.3 0.00014 36.4 9.7 38 8-48 1-38 (244)
158 PRK10916 ADP-heptose:LPS hepto 86.0 9.1 0.0002 37.5 11.3 104 8-136 1-106 (348)
159 TIGR03713 acc_sec_asp1 accesso 85.4 1.8 3.9E-05 44.9 6.2 90 344-451 409-505 (519)
160 PRK00346 surE 5'(3')-nucleotid 85.3 7.5 0.00016 36.0 9.5 38 8-48 1-38 (250)
161 PRK10422 lipopolysaccharide co 84.6 16 0.00034 35.9 12.2 107 7-136 5-113 (352)
162 COG0052 RpsB Ribosomal protein 84.4 13 0.00029 33.9 10.3 35 108-142 154-190 (252)
163 PRK06718 precorrin-2 dehydroge 84.4 30 0.00064 31.0 13.2 149 268-456 10-166 (202)
164 PRK02797 4-alpha-L-fucosyltran 83.9 13 0.00029 35.3 10.5 80 344-432 206-291 (322)
165 PRK05973 replicative DNA helic 83.8 11 0.00024 34.6 9.9 48 7-55 64-111 (237)
166 PF07429 Glyco_transf_56: 4-al 83.6 13 0.00027 36.0 10.3 82 344-434 245-332 (360)
167 PF02951 GSH-S_N: Prokaryotic 83.6 2.1 4.5E-05 34.6 4.5 40 8-48 1-43 (119)
168 PRK10964 ADP-heptose:LPS hepto 83.0 7.7 0.00017 37.5 9.2 41 8-48 1-42 (322)
169 PF02702 KdpD: Osmosensitive K 82.2 5.8 0.00013 35.1 6.9 42 5-47 3-44 (211)
170 PRK08506 replicative DNA helic 82.0 13 0.00028 38.2 10.7 51 7-58 192-242 (472)
171 TIGR02400 trehalose_OtsA alpha 82.0 8.2 0.00018 39.5 9.2 102 350-474 342-454 (456)
172 PRK05986 cob(I)alamin adenolsy 81.9 35 0.00076 30.1 11.8 105 6-121 21-126 (191)
173 PF06925 MGDG_synth: Monogalac 81.6 4.1 8.8E-05 35.3 6.0 46 92-139 73-124 (169)
174 cd01425 RPS2 Ribosomal protein 81.2 7.2 0.00016 34.7 7.5 117 19-142 40-161 (193)
175 cd02070 corrinoid_protein_B12- 80.6 4.5 9.7E-05 36.2 6.1 51 6-57 81-131 (201)
176 PF04413 Glycos_transf_N: 3-De 80.2 11 0.00024 33.3 8.2 102 9-139 22-126 (186)
177 COG1618 Predicted nucleotide k 79.3 9 0.00019 32.7 6.9 100 6-119 4-109 (179)
178 PF00551 Formyl_trans_N: Formy 79.2 25 0.00053 30.8 10.2 106 8-140 1-110 (181)
179 COG0003 ArsA Predicted ATPase 79.2 18 0.0004 34.9 10.0 40 8-48 2-42 (322)
180 cd03788 GT1_TPS Trehalose-6-Ph 78.7 7.4 0.00016 39.9 7.7 105 348-474 345-459 (460)
181 TIGR02370 pyl_corrinoid methyl 78.5 5.7 0.00012 35.4 6.0 51 6-57 83-133 (197)
182 PRK05595 replicative DNA helic 78.3 22 0.00048 36.2 11.0 49 9-58 203-252 (444)
183 PRK06321 replicative DNA helic 78.0 27 0.00059 35.8 11.4 48 9-57 228-276 (472)
184 TIGR03600 phage_DnaB phage rep 77.9 32 0.0007 34.7 12.0 49 8-57 195-244 (421)
185 TIGR00715 precor6x_red precorr 77.9 24 0.00053 32.9 10.1 93 8-138 1-99 (256)
186 PF02374 ArsA_ATPase: Anion-tr 77.9 4.3 9.4E-05 39.0 5.4 40 8-48 1-41 (305)
187 cd00561 CobA_CobO_BtuR ATP:cor 77.7 44 0.00096 28.6 11.6 102 9-121 4-106 (159)
188 PRK13931 stationary phase surv 77.6 21 0.00046 33.3 9.6 114 8-139 1-129 (261)
189 TIGR02919 accessory Sec system 77.6 8.9 0.00019 38.9 7.7 93 344-451 328-425 (438)
190 PF02310 B12-binding: B12 bind 76.5 8.6 0.00019 30.9 6.1 50 8-58 1-50 (121)
191 cd02071 MM_CoA_mut_B12_BD meth 76.5 6.7 0.00014 31.9 5.4 46 9-55 1-46 (122)
192 TIGR00665 DnaB replicative DNA 76.3 25 0.00053 35.7 10.7 50 8-58 196-246 (434)
193 TIGR03878 thermo_KaiC_2 KaiC d 76.2 60 0.0013 30.3 12.5 41 8-49 37-77 (259)
194 PF05159 Capsule_synth: Capsul 75.8 19 0.0004 33.8 9.1 43 345-390 184-226 (269)
195 PRK05636 replicative DNA helic 75.6 12 0.00026 38.8 8.1 50 7-57 265-315 (505)
196 TIGR03877 thermo_KaiC_1 KaiC d 75.5 61 0.0013 29.7 12.2 128 6-138 20-168 (237)
197 PRK04328 hypothetical protein; 75.3 68 0.0015 29.7 12.5 128 6-138 22-170 (249)
198 PRK12311 rpsB 30S ribosomal pr 74.8 17 0.00038 35.0 8.4 35 108-142 150-186 (326)
199 PRK05748 replicative DNA helic 74.6 28 0.00061 35.5 10.6 50 8-58 204-254 (448)
200 cd00984 DnaB_C DnaB helicase C 74.0 50 0.0011 30.2 11.4 48 9-56 15-62 (242)
201 PRK06849 hypothetical protein; 73.9 31 0.00066 34.4 10.5 38 5-47 2-39 (389)
202 TIGR02655 circ_KaiC circadian 73.8 16 0.00034 37.7 8.6 114 6-139 262-397 (484)
203 PRK03359 putative electron tra 73.3 61 0.0013 30.2 11.4 96 24-139 41-147 (256)
204 PF01012 ETF: Electron transfe 73.3 35 0.00075 29.2 9.5 99 23-139 19-122 (164)
205 PRK08760 replicative DNA helic 73.2 36 0.00077 35.0 10.9 49 8-57 230-279 (476)
206 cd02069 methionine_synthase_B1 73.1 9.7 0.00021 34.4 6.0 52 6-58 87-138 (213)
207 PRK12342 hypothetical protein; 73.1 51 0.0011 30.7 10.8 96 24-139 40-144 (254)
208 cd01974 Nitrogenase_MoFe_beta 73.1 27 0.00059 35.4 10.0 98 6-138 302-402 (435)
209 PF00318 Ribosomal_S2: Ribosom 73.1 66 0.0014 29.0 11.4 116 20-142 41-177 (211)
210 COG2185 Sbm Methylmalonyl-CoA 73.0 8.9 0.00019 31.9 5.2 110 5-136 10-120 (143)
211 PF02441 Flavoprotein: Flavopr 72.9 5.2 0.00011 32.9 4.0 41 8-50 1-41 (129)
212 PRK06067 flagellar accessory p 72.7 13 0.00029 34.0 7.1 47 7-54 25-71 (234)
213 cd01980 Chlide_reductase_Y Chl 72.5 47 0.001 33.5 11.5 94 9-138 282-375 (416)
214 PRK07773 replicative DNA helic 71.7 39 0.00085 37.8 11.6 49 9-57 219-267 (886)
215 PLN03063 alpha,alpha-trehalose 71.6 14 0.00031 40.6 8.0 103 355-478 370-479 (797)
216 cd01965 Nitrogenase_MoFe_beta_ 71.5 23 0.00049 35.9 9.0 35 99-138 362-396 (428)
217 PRK13789 phosphoribosylamine-- 71.3 21 0.00046 36.1 8.7 91 6-135 3-96 (426)
218 PRK09165 replicative DNA helic 70.7 46 0.001 34.5 11.1 49 9-57 219-281 (497)
219 PRK10490 sensor protein KdpD; 70.6 20 0.00044 40.2 9.0 42 5-47 22-63 (895)
220 PRK06904 replicative DNA helic 70.5 38 0.00083 34.8 10.3 51 7-58 221-272 (472)
221 cd03793 GT1_Glycogen_synthase_ 70.2 15 0.00032 38.4 7.2 80 353-436 467-553 (590)
222 TIGR02015 BchY chlorophyllide 69.8 39 0.00083 34.2 10.1 90 9-138 287-380 (422)
223 TIGR01501 MthylAspMutase methy 68.9 15 0.00032 30.4 5.7 51 7-58 1-51 (134)
224 PRK08006 replicative DNA helic 68.8 66 0.0014 33.1 11.6 51 7-58 224-275 (471)
225 COG0438 RfaG Glycosyltransfera 68.7 1E+02 0.0022 28.8 16.0 80 344-436 257-343 (381)
226 cd01968 Nitrogenase_NifE_I Nit 68.5 41 0.00089 33.8 10.1 34 99-137 347-380 (410)
227 PHA02542 41 41 helicase; Provi 68.4 27 0.00058 35.8 8.7 47 9-56 192-238 (473)
228 PRK08840 replicative DNA helic 68.3 74 0.0016 32.6 11.8 50 8-58 218-268 (464)
229 cd00532 MGS-like MGS-like doma 67.9 45 0.00098 26.4 8.3 84 20-136 10-104 (112)
230 TIGR00708 cobA cob(I)alamin ad 67.6 83 0.0018 27.3 10.8 101 9-121 7-108 (173)
231 PF08323 Glyco_transf_5: Starc 67.5 21 0.00046 33.0 7.2 22 24-46 22-43 (245)
232 TIGR03880 KaiC_arch_3 KaiC dom 67.0 31 0.00067 31.2 8.2 103 7-121 16-118 (224)
233 COG0552 FtsY Signal recognitio 66.9 69 0.0015 30.9 10.4 60 6-70 138-200 (340)
234 PRK07004 replicative DNA helic 66.8 46 0.001 34.0 10.1 49 9-58 215-264 (460)
235 TIGR01283 nifE nitrogenase mol 66.7 50 0.0011 33.8 10.4 94 7-137 326-419 (456)
236 COG0541 Ffh Signal recognition 66.4 40 0.00087 33.7 9.0 49 6-55 99-147 (451)
237 PF04464 Glyphos_transf: CDP-G 66.4 11 0.00023 37.4 5.3 111 345-470 253-367 (369)
238 PRK06749 replicative DNA helic 66.0 54 0.0012 33.2 10.2 50 8-58 187-236 (428)
239 PRK00090 bioD dithiobiotin syn 65.6 66 0.0014 29.0 10.0 29 14-43 7-35 (222)
240 cd00550 ArsA_ATPase Oxyanion-t 65.0 48 0.001 30.8 9.1 37 10-47 3-39 (254)
241 PF00448 SRP54: SRP54-type pro 64.6 76 0.0016 28.2 9.9 58 8-70 2-62 (196)
242 KOG0832 Mitochondrial/chloropl 64.4 11 0.00023 33.9 4.2 116 17-142 90-207 (251)
243 cd01121 Sms Sms (bacterial rad 63.9 1.2E+02 0.0025 30.2 11.9 41 9-50 84-124 (372)
244 PF02142 MGS: MGS-like domain 63.8 26 0.00056 26.9 6.0 83 24-135 2-94 (95)
245 TIGR01470 cysG_Nterm siroheme 63.7 1.1E+02 0.0024 27.4 12.4 96 355-456 64-166 (205)
246 smart00851 MGS MGS-like domain 63.6 62 0.0013 24.4 8.4 79 24-135 2-89 (90)
247 PRK11823 DNA repair protein Ra 63.6 53 0.0011 33.5 9.7 104 9-139 82-206 (446)
248 cd01124 KaiC KaiC is a circadi 63.5 99 0.0021 26.7 10.9 44 10-54 2-45 (187)
249 COG0467 RAD55 RecA-superfamily 63.4 16 0.00034 34.1 5.6 108 5-121 21-135 (260)
250 PRK08305 spoVFB dipicolinate s 62.9 12 0.00026 33.2 4.3 42 6-48 4-45 (196)
251 TIGR01011 rpsB_bact ribosomal 62.9 57 0.0012 29.8 8.8 35 108-142 153-189 (225)
252 TIGR00460 fmt methionyl-tRNA f 62.8 87 0.0019 30.2 10.7 33 8-46 1-33 (313)
253 COG2894 MinD Septum formation 62.5 73 0.0016 28.9 9.0 37 9-46 3-41 (272)
254 PRK14478 nitrogenase molybdenu 61.2 97 0.0021 31.9 11.3 93 7-136 324-416 (475)
255 COG1066 Sms Predicted ATP-depe 61.1 31 0.00067 34.2 7.0 103 9-139 95-218 (456)
256 cd03466 Nitrogenase_NifN_2 Nit 60.7 69 0.0015 32.5 10.0 35 99-138 363-397 (429)
257 PRK10867 signal recognition pa 60.2 68 0.0015 32.5 9.6 48 7-54 100-147 (433)
258 TIGR03881 KaiC_arch_4 KaiC dom 59.6 51 0.0011 29.9 8.2 46 6-52 19-64 (229)
259 PF09314 DUF1972: Domain of un 59.6 1.2E+02 0.0026 26.7 10.0 47 18-72 16-63 (185)
260 PF04127 DFP: DNA / pantothena 59.6 7.2 0.00016 34.4 2.4 39 7-46 3-53 (185)
261 cd01977 Nitrogenase_VFe_alpha 59.3 66 0.0014 32.4 9.6 95 7-138 288-383 (415)
262 COG0041 PurE Phosphoribosylcar 59.2 1.1E+02 0.0024 25.8 10.9 141 271-456 4-152 (162)
263 PRK05299 rpsB 30S ribosomal pr 58.0 79 0.0017 29.5 9.1 35 108-142 155-191 (258)
264 TIGR00347 bioD dethiobiotin sy 57.6 64 0.0014 27.4 8.1 29 13-42 4-32 (166)
265 COG2874 FlaH Predicted ATPases 57.6 34 0.00073 30.8 6.1 94 16-124 37-137 (235)
266 PRK01077 cobyrinic acid a,c-di 56.9 69 0.0015 32.7 9.3 105 9-140 5-123 (451)
267 PF07355 GRDB: Glycine/sarcosi 55.8 25 0.00054 34.0 5.4 45 91-137 63-117 (349)
268 PF12146 Hydrolase_4: Putative 54.9 29 0.00063 25.6 4.6 35 7-42 15-49 (79)
269 TIGR01284 alt_nitrog_alph nitr 54.4 76 0.0016 32.5 9.1 94 7-138 325-420 (457)
270 cd02065 B12-binding_like B12 b 54.2 34 0.00073 27.5 5.5 46 9-55 1-46 (125)
271 cd01122 GP4d_helicase GP4d_hel 54.2 57 0.0012 30.4 7.8 49 8-56 31-79 (271)
272 COG3660 Predicted nucleoside-d 54.2 85 0.0018 29.2 8.1 38 350-388 234-271 (329)
273 PLN02470 acetolactate synthase 53.8 92 0.002 33.0 10.0 28 362-389 76-109 (585)
274 TIGR00640 acid_CoA_mut_C methy 53.3 43 0.00093 27.6 5.9 51 6-57 1-51 (132)
275 COG1484 DnaC DNA replication p 53.3 19 0.00042 33.5 4.3 42 6-48 104-145 (254)
276 TIGR02990 ectoine_eutA ectoine 53.0 1.1E+02 0.0024 28.1 9.1 101 21-138 105-213 (239)
277 PRK14501 putative bifunctional 52.7 40 0.00087 36.8 7.2 113 347-478 345-464 (726)
278 CHL00067 rps2 ribosomal protei 52.4 1.5E+02 0.0033 27.1 9.8 35 108-142 159-195 (230)
279 cd03115 SRP The signal recogni 52.4 1.4E+02 0.003 25.6 9.4 41 10-51 3-43 (173)
280 cd01424 MGS_CPS_II Methylglyox 52.2 1.1E+02 0.0025 23.9 9.1 84 19-136 10-100 (110)
281 TIGR00416 sms DNA repair prote 51.7 92 0.002 31.8 9.1 41 9-50 96-136 (454)
282 PF02572 CobA_CobO_BtuR: ATP:c 51.2 1.7E+02 0.0036 25.5 10.3 101 9-121 5-107 (172)
283 COG2109 BtuR ATP:corrinoid ade 51.1 1.7E+02 0.0038 25.8 11.7 103 9-121 30-133 (198)
284 KOG0853 Glycosyltransferase [C 50.9 25 0.00054 35.9 4.8 65 369-446 377-441 (495)
285 PF07302 AroM: AroM protein; 50.5 2E+02 0.0043 26.2 10.2 27 110-136 178-207 (221)
286 COG2205 KdpD Osmosensitive K+ 50.5 77 0.0017 34.5 8.4 43 5-48 20-62 (890)
287 cd01985 ETF The electron trans 50.4 1.7E+02 0.0037 25.4 9.8 97 23-138 23-122 (181)
288 PRK05647 purN phosphoribosylgl 50.1 1.9E+02 0.0041 25.8 10.6 108 8-140 2-111 (200)
289 KOG0780 Signal recognition par 50.0 1.2E+02 0.0026 30.0 8.9 49 6-55 100-148 (483)
290 TIGR02195 heptsyl_trn_II lipop 49.2 2.5E+02 0.0055 27.0 12.2 100 7-139 174-278 (334)
291 PRK14477 bifunctional nitrogen 49.1 97 0.0021 34.9 9.5 96 6-138 319-414 (917)
292 PRK05562 precorrin-2 dehydroge 49.0 2.1E+02 0.0045 26.0 10.8 153 259-453 17-178 (223)
293 cd01423 MGS_CPS_I_III Methylgl 48.8 1.3E+02 0.0029 23.8 8.5 95 11-136 3-106 (116)
294 cd01452 VWA_26S_proteasome_sub 48.2 1.7E+02 0.0037 25.8 9.1 65 8-73 108-175 (187)
295 TIGR00959 ffh signal recogniti 48.1 1.2E+02 0.0025 30.8 9.1 45 7-52 99-144 (428)
296 cd01394 radB RadB. The archaea 48.1 2E+02 0.0044 25.6 10.5 38 9-47 21-58 (218)
297 PRK07313 phosphopantothenoylcy 48.0 24 0.00051 31.0 3.7 44 8-53 2-45 (182)
298 PF02571 CbiJ: Precorrin-6x re 47.5 97 0.0021 28.7 7.8 95 8-139 1-101 (249)
299 TIGR02852 spore_dpaB dipicolin 47.4 26 0.00057 30.8 3.9 39 8-47 1-39 (187)
300 PRK04885 ppnK inorganic polyph 47.2 33 0.00072 32.1 4.8 54 360-436 35-94 (265)
301 COG1327 Predicted transcriptio 46.9 23 0.0005 29.6 3.2 111 366-483 31-153 (156)
302 PRK00005 fmt methionyl-tRNA fo 46.6 2.3E+02 0.0051 27.1 10.7 33 8-46 1-33 (309)
303 PF10649 DUF2478: Protein of u 46.5 1.9E+02 0.0041 24.8 8.8 112 16-139 7-131 (159)
304 COG1422 Predicted membrane pro 46.4 51 0.0011 29.1 5.4 87 374-478 24-111 (201)
305 PRK09302 circadian clock prote 46.2 69 0.0015 33.3 7.5 99 7-121 273-374 (509)
306 cd03114 ArgK-like The function 45.9 1.8E+02 0.0039 24.4 10.1 36 10-46 2-37 (148)
307 cd00672 CysRS_core catalytic c 45.8 2E+02 0.0043 26.0 9.4 92 16-134 34-129 (213)
308 TIGR01862 N2-ase-Ialpha nitrog 45.7 1.7E+02 0.0037 29.8 10.1 34 99-137 378-411 (443)
309 cd07035 TPP_PYR_POX_like Pyrim 45.6 1.3E+02 0.0029 25.1 8.0 28 363-390 60-93 (155)
310 TIGR00750 lao LAO/AO transport 45.5 2.5E+02 0.0054 26.8 10.7 41 7-48 34-74 (300)
311 PF06506 PrpR_N: Propionate ca 45.2 32 0.00069 30.0 4.1 70 360-435 32-124 (176)
312 PRK05920 aromatic acid decarbo 45.0 36 0.00077 30.5 4.4 42 7-50 3-44 (204)
313 TIGR02237 recomb_radB DNA repa 44.9 2.2E+02 0.0048 25.1 10.3 38 8-46 13-50 (209)
314 PHA02698 hypothetical protein; 44.2 70 0.0015 23.0 4.8 43 418-477 39-81 (89)
315 TIGR01918 various_sel_PB selen 44.1 48 0.001 33.0 5.4 45 91-137 59-113 (431)
316 TIGR01917 gly_red_sel_B glycin 43.9 48 0.001 33.0 5.4 45 91-137 59-113 (431)
317 PRK06027 purU formyltetrahydro 43.8 2.5E+02 0.0053 26.7 10.2 108 4-139 86-195 (286)
318 PRK02155 ppnK NAD(+)/NADH kina 43.7 42 0.00092 31.9 5.0 55 359-436 62-120 (291)
319 cd02072 Glm_B12_BD B12 binding 42.9 63 0.0014 26.5 5.2 49 9-58 1-49 (128)
320 PF00731 AIRC: AIR carboxylase 42.5 2.1E+02 0.0045 24.2 8.6 137 272-453 3-147 (150)
321 PF03308 ArgK: ArgK protein; 42.3 2.3E+02 0.0051 26.4 9.2 114 6-137 28-150 (266)
322 COG0678 AHP1 Peroxiredoxin [Po 42.3 1.2E+02 0.0026 25.6 6.6 61 6-68 36-103 (165)
323 TIGR00725 conserved hypothetic 42.2 1.3E+02 0.0028 25.7 7.3 39 352-390 82-123 (159)
324 cd07037 TPP_PYR_MenD Pyrimidin 42.1 72 0.0016 27.4 5.7 28 362-389 60-93 (162)
325 PRK06732 phosphopantothenate-- 41.3 30 0.00066 31.6 3.5 37 8-45 1-49 (229)
326 PF02571 CbiJ: Precorrin-6x re 41.1 59 0.0013 30.2 5.4 39 98-138 184-226 (249)
327 PRK14077 pnk inorganic polypho 41.1 45 0.00097 31.7 4.7 57 357-436 61-121 (287)
328 COG1797 CobB Cobyrinic acid a, 40.8 1.2E+02 0.0027 30.4 7.7 33 9-42 2-35 (451)
329 TIGR00379 cobB cobyrinic acid 40.5 2.1E+02 0.0046 29.2 9.8 106 10-141 2-120 (449)
330 PF02776 TPP_enzyme_N: Thiamin 40.4 1E+02 0.0022 26.5 6.6 28 363-390 65-98 (172)
331 PRK06988 putative formyltransf 40.4 3.3E+02 0.0071 26.2 10.6 33 8-46 3-35 (312)
332 PLN02939 transferase, transfer 39.9 57 0.0012 36.4 5.8 42 5-47 479-526 (977)
333 PRK06249 2-dehydropantoate 2-r 39.8 38 0.00083 32.6 4.2 36 5-46 3-38 (313)
334 KOG2941 Beta-1,4-mannosyltrans 39.7 3.8E+02 0.0081 26.3 28.9 128 4-143 9-141 (444)
335 COG1698 Uncharacterized protei 39.6 1.4E+02 0.003 22.6 5.9 51 423-476 16-66 (93)
336 PRK09620 hypothetical protein; 39.5 44 0.00095 30.6 4.2 39 6-45 2-52 (229)
337 PRK12448 dihydroxy-acid dehydr 39.3 2.2E+02 0.0049 30.0 9.6 42 98-141 101-146 (615)
338 PLN02929 NADH kinase 39.2 45 0.00097 31.8 4.3 67 359-436 63-138 (301)
339 PRK02231 ppnK inorganic polyph 39.0 47 0.001 31.3 4.4 60 353-435 35-98 (272)
340 PF01075 Glyco_transf_9: Glyco 38.8 1.2E+02 0.0027 27.6 7.3 102 7-140 105-211 (247)
341 TIGR02398 gluc_glyc_Psyn gluco 38.7 2.3E+02 0.005 29.2 9.7 109 346-476 364-482 (487)
342 COG0801 FolK 7,8-dihydro-6-hyd 38.6 66 0.0014 27.5 4.8 35 271-305 3-37 (160)
343 TIGR01286 nifK nitrogenase mol 38.2 2.6E+02 0.0057 29.1 10.1 35 99-138 428-462 (515)
344 PRK09361 radB DNA repair and r 38.1 3E+02 0.0065 24.7 11.0 39 7-46 23-61 (225)
345 cd01967 Nitrogenase_MoFe_alpha 38.0 2.5E+02 0.0054 28.1 9.9 35 99-138 346-380 (406)
346 PF00862 Sucrose_synth: Sucros 37.9 56 0.0012 33.4 4.9 122 18-140 296-433 (550)
347 PF00148 Oxidored_nitro: Nitro 37.4 3.7E+02 0.0081 26.7 11.0 96 7-138 271-366 (398)
348 PRK06029 3-octaprenyl-4-hydrox 37.2 48 0.001 29.2 4.0 41 8-50 2-43 (185)
349 COG3195 Uncharacterized protei 37.1 1.4E+02 0.003 25.5 6.3 55 394-453 110-164 (176)
350 PRK10637 cysG siroheme synthas 36.5 4.8E+02 0.011 26.6 12.9 95 354-456 66-169 (457)
351 PRK07206 hypothetical protein; 36.3 1.6E+02 0.0034 29.6 8.2 91 8-133 3-95 (416)
352 PRK04020 rps2P 30S ribosomal p 36.2 3.2E+02 0.0069 24.5 9.4 107 6-142 29-148 (204)
353 COG1090 Predicted nucleoside-d 36.1 3.8E+02 0.0083 25.3 10.1 92 25-118 12-110 (297)
354 TIGR00639 PurN phosphoribosylg 35.9 3.1E+02 0.0067 24.2 11.5 107 8-140 1-110 (190)
355 PRK01911 ppnK inorganic polyph 35.7 66 0.0014 30.6 4.9 57 357-436 61-121 (292)
356 TIGR01861 ANFD nitrogenase iro 35.7 5.3E+02 0.011 26.9 11.9 93 7-137 328-422 (513)
357 PRK04539 ppnK inorganic polyph 35.7 76 0.0016 30.3 5.3 55 359-436 67-125 (296)
358 PF01075 Glyco_transf_9: Glyco 35.5 97 0.0021 28.3 6.1 99 268-388 104-208 (247)
359 PLN02935 Bifunctional NADH kin 35.5 68 0.0015 32.9 5.2 55 359-436 261-319 (508)
360 PRK10964 ADP-heptose:LPS hepto 35.3 87 0.0019 30.1 5.9 131 270-434 179-321 (322)
361 KOG1209 1-Acyl dihydroxyaceton 35.2 52 0.0011 29.6 3.7 38 1-45 1-40 (289)
362 PRK00039 ruvC Holliday junctio 35.2 1.1E+02 0.0025 26.2 5.9 48 91-140 44-106 (164)
363 PF10835 DUF2573: Protein of u 35.0 1.8E+02 0.004 21.3 5.9 59 423-482 9-77 (82)
364 PF10100 DUF2338: Uncharacteri 34.9 2.4E+02 0.0053 28.1 8.5 120 9-138 85-216 (429)
365 KOG0541 Alkyl hydroperoxide re 34.9 2.2E+02 0.0048 24.2 7.1 64 7-72 43-113 (171)
366 PRK00784 cobyric acid synthase 34.8 4.7E+02 0.01 27.0 11.4 34 10-44 5-39 (488)
367 PRK13982 bifunctional SbtC-lik 34.6 51 0.0011 33.8 4.2 41 5-46 254-306 (475)
368 PRK10916 ADP-heptose:LPS hepto 34.6 4.4E+02 0.0095 25.6 12.3 104 7-139 180-288 (348)
369 cd06559 Endonuclease_V Endonuc 34.3 59 0.0013 29.2 4.1 42 97-138 80-128 (208)
370 PRK05579 bifunctional phosphop 34.0 74 0.0016 31.9 5.2 53 5-59 4-56 (399)
371 cd01141 TroA_d Periplasmic bin 33.8 57 0.0012 28.4 4.0 29 110-138 69-99 (186)
372 COG0859 RfaF ADP-heptose:LPS h 33.8 4.5E+02 0.0097 25.5 11.4 100 7-140 175-279 (334)
373 PRK02649 ppnK inorganic polyph 33.1 70 0.0015 30.7 4.7 55 359-436 67-125 (305)
374 TIGR01279 DPOR_bchN light-inde 33.1 1.7E+02 0.0037 29.3 7.7 38 6-49 273-310 (407)
375 PRK03372 ppnK inorganic polyph 33.1 79 0.0017 30.4 5.0 55 359-436 71-129 (306)
376 TIGR00521 coaBC_dfp phosphopan 33.0 67 0.0014 32.1 4.7 50 6-57 2-51 (390)
377 COG0205 PfkA 6-phosphofructoki 33.0 98 0.0021 30.2 5.6 115 7-137 2-124 (347)
378 PF05728 UPF0227: Uncharacteri 33.0 1.2E+02 0.0026 26.7 5.8 44 97-140 46-90 (187)
379 PF13481 AAA_25: AAA domain; P 32.5 2.5E+02 0.0054 24.3 8.0 47 9-56 34-90 (193)
380 CHL00076 chlB photochlorophyll 32.5 69 0.0015 33.4 4.8 36 98-138 364-399 (513)
381 PRK00911 dihydroxy-acid dehydr 32.3 2.5E+02 0.0054 29.4 8.6 44 96-141 97-144 (552)
382 COG2210 Peroxiredoxin family p 32.0 3E+02 0.0065 22.9 8.0 33 12-45 8-40 (137)
383 PF09334 tRNA-synt_1g: tRNA sy 32.0 1.5E+02 0.0033 29.6 7.1 71 18-115 16-89 (391)
384 PRK14098 glycogen synthase; Pr 31.8 76 0.0016 32.8 5.1 36 8-46 6-49 (489)
385 PF09001 DUF1890: Domain of un 31.7 51 0.0011 27.2 2.9 35 11-46 3-37 (139)
386 PTZ00445 p36-lilke protein; Pr 31.6 2.2E+02 0.0048 25.7 7.1 111 19-138 74-205 (219)
387 TIGR00877 purD phosphoribosyla 31.5 2.9E+02 0.0064 27.7 9.3 33 8-46 1-33 (423)
388 PRK11519 tyrosine kinase; Prov 31.5 5.6E+02 0.012 28.0 11.9 42 7-49 525-568 (719)
389 COG4408 Uncharacterized protei 31.4 4.7E+02 0.01 25.4 9.4 119 11-140 89-220 (431)
390 cd07039 TPP_PYR_POX Pyrimidine 31.3 1.1E+02 0.0024 26.2 5.3 27 363-389 64-96 (164)
391 TIGR01860 VNFD nitrogenase van 31.3 4E+02 0.0086 27.3 10.1 30 102-136 391-420 (461)
392 TIGR02113 coaC_strep phosphopa 31.3 55 0.0012 28.6 3.3 41 9-51 2-42 (177)
393 PRK07525 sulfoacetaldehyde ace 31.2 3E+02 0.0065 29.2 9.6 28 362-389 68-101 (588)
394 PF01210 NAD_Gly3P_dh_N: NAD-d 31.1 37 0.00081 28.8 2.3 32 9-46 1-32 (157)
395 PRK09435 membrane ATPase/prote 30.8 5.1E+02 0.011 25.2 10.9 43 6-49 55-97 (332)
396 PRK00843 egsA NAD(P)-dependent 30.7 4.3E+02 0.0093 25.8 9.9 112 7-141 4-121 (350)
397 TIGR01005 eps_transp_fam exopo 30.7 4.1E+02 0.009 29.2 10.8 39 10-49 549-588 (754)
398 PRK10422 lipopolysaccharide co 30.6 1.5E+02 0.0033 28.9 6.8 98 269-388 183-287 (352)
399 cd01120 RecA-like_NTPases RecA 30.4 3.1E+02 0.0066 22.5 12.6 41 9-50 1-41 (165)
400 cd01972 Nitrogenase_VnfE_like 30.4 3.8E+02 0.0082 27.1 9.7 37 99-138 364-400 (426)
401 cd01976 Nitrogenase_MoFe_alpha 30.4 60 0.0013 32.8 3.9 35 99-138 360-394 (421)
402 PRK03378 ppnK inorganic polyph 30.2 80 0.0017 30.1 4.5 58 356-436 59-120 (292)
403 cd00316 Oxidoreductase_nitroge 30.2 5.1E+02 0.011 25.6 10.7 35 99-138 339-373 (399)
404 PRK11914 diacylglycerol kinase 30.2 1.3E+02 0.0028 28.7 6.1 26 365-390 67-96 (306)
405 PRK13604 luxD acyl transferase 30.1 1.1E+02 0.0025 29.3 5.5 36 6-42 35-70 (307)
406 PF06745 KaiC: KaiC; InterPro 30.0 26 0.00056 31.8 1.2 101 6-121 18-126 (226)
407 KOG2825 Putative arsenite-tran 29.9 2.5E+02 0.0055 26.1 7.2 43 5-48 16-59 (323)
408 PRK11199 tyrA bifunctional cho 29.6 5.6E+02 0.012 25.3 11.2 35 6-46 97-132 (374)
409 PRK12723 flagellar biosynthesi 29.5 4.7E+02 0.01 26.1 9.9 43 7-50 174-220 (388)
410 PF08766 DEK_C: DEK C terminal 29.5 1.8E+02 0.0039 19.5 6.3 50 421-473 1-51 (54)
411 PRK01231 ppnK inorganic polyph 29.3 1.1E+02 0.0024 29.1 5.4 55 359-436 61-119 (295)
412 PF01372 Melittin: Melittin; 29.3 9.2 0.0002 20.9 -1.1 17 371-387 1-17 (26)
413 cd01075 NAD_bind_Leu_Phe_Val_D 29.3 90 0.0019 27.8 4.5 34 3-42 24-57 (200)
414 PRK08155 acetolactate synthase 29.3 1.4E+02 0.003 31.5 6.6 90 275-388 3-108 (564)
415 TIGR00421 ubiX_pad polyprenyl 29.3 58 0.0013 28.5 3.2 40 9-50 1-40 (181)
416 COG2910 Putative NADH-flavin r 29.3 51 0.0011 28.9 2.7 34 8-46 1-34 (211)
417 PF05225 HTH_psq: helix-turn-h 29.2 1E+02 0.0022 19.9 3.5 26 421-449 1-27 (45)
418 PF01470 Peptidase_C15: Pyrogl 29.2 80 0.0017 28.2 4.1 38 8-45 1-42 (202)
419 PRK09219 xanthine phosphoribos 29.0 1.4E+02 0.0031 26.3 5.6 43 94-138 36-80 (189)
420 PRK06276 acetolactate synthase 28.9 2.5E+02 0.0055 29.8 8.5 116 288-434 5-143 (586)
421 PRK00771 signal recognition pa 28.8 1.5E+02 0.0034 30.0 6.5 44 6-50 94-137 (437)
422 PF04244 DPRP: Deoxyribodipyri 28.8 58 0.0013 29.7 3.2 26 20-46 47-72 (224)
423 TIGR00147 lipid kinase, YegS/R 28.7 1.7E+02 0.0038 27.6 6.7 26 365-390 60-91 (293)
424 TIGR00110 ilvD dihydroxy-acid 28.6 3.4E+02 0.0073 28.3 8.8 42 98-141 79-124 (535)
425 PRK02910 light-independent pro 28.5 88 0.0019 32.6 4.9 35 99-138 353-387 (519)
426 COG4126 Hydantoin racemase [Am 28.5 4.5E+02 0.0098 23.8 9.5 90 36-135 109-201 (230)
427 PLN02470 acetolactate synthase 28.3 4.2E+02 0.0092 28.1 10.1 61 365-434 476-545 (585)
428 PF03641 Lysine_decarbox: Poss 28.3 76 0.0017 26.1 3.6 35 355-389 47-91 (133)
429 COG0223 Fmt Methionyl-tRNA for 28.3 56 0.0012 31.3 3.1 36 7-48 1-36 (307)
430 TIGR01278 DPOR_BchB light-inde 28.3 87 0.0019 32.6 4.8 35 99-138 355-389 (511)
431 PRK06522 2-dehydropantoate 2-r 28.2 70 0.0015 30.4 3.9 32 8-45 1-32 (304)
432 PF04493 Endonuclease_5: Endon 28.2 1E+02 0.0022 27.6 4.6 43 97-139 76-125 (206)
433 cd02034 CooC The accessory pro 28.2 1.3E+02 0.0028 24.0 4.8 37 9-46 1-37 (116)
434 cd01981 Pchlide_reductase_B Pc 27.8 96 0.0021 31.4 4.9 35 99-138 361-395 (430)
435 PRK14619 NAD(P)H-dependent gly 27.8 87 0.0019 30.0 4.4 35 6-46 3-37 (308)
436 TIGR00730 conserved hypothetic 27.7 1.8E+02 0.0039 25.4 5.9 36 354-389 89-133 (178)
437 PRK05632 phosphate acetyltrans 27.6 4.3E+02 0.0092 28.7 10.0 102 9-141 4-116 (684)
438 COG0287 TyrA Prephenate dehydr 27.6 1.5E+02 0.0032 28.1 5.8 40 7-52 3-42 (279)
439 TIGR02853 spore_dpaA dipicolin 27.6 1.5E+02 0.0033 28.2 5.9 104 22-137 11-119 (287)
440 PTZ00254 40S ribosomal protein 27.5 5E+02 0.011 24.1 9.0 33 110-142 118-152 (249)
441 PRK05541 adenylylsulfate kinas 27.4 1.4E+02 0.003 25.6 5.3 43 1-44 1-43 (176)
442 cd00861 ProRS_anticodon_short 27.3 1.1E+02 0.0024 22.9 4.2 37 7-44 1-39 (94)
443 PF00282 Pyridoxal_deC: Pyrido 26.8 1.2E+02 0.0027 30.0 5.4 69 365-435 106-191 (373)
444 PRK14075 pnk inorganic polypho 26.7 1.1E+02 0.0024 28.4 4.8 54 360-436 41-95 (256)
445 cd01979 Pchlide_reductase_N Pc 26.7 5.3E+02 0.011 25.7 9.9 34 7-46 276-309 (396)
446 COG0297 GlgA Glycogen synthase 26.4 2.8E+02 0.0061 28.6 7.9 92 370-477 381-478 (487)
447 COG0771 MurD UDP-N-acetylmuram 26.3 1E+02 0.0022 31.3 4.7 40 2-48 3-42 (448)
448 COG0503 Apt Adenine/guanine ph 26.2 1.7E+02 0.0037 25.5 5.6 38 99-138 44-83 (179)
449 PRK01185 ppnK inorganic polyph 26.1 1E+02 0.0022 29.0 4.4 54 360-436 52-106 (271)
450 COG4088 Predicted nucleotide k 25.9 85 0.0018 28.2 3.5 37 9-46 3-39 (261)
451 TIGR01007 eps_fam capsular exo 25.8 1.3E+02 0.0028 26.6 4.9 41 7-48 16-58 (204)
452 PF03808 Glyco_tran_WecB: Glyc 25.7 4.3E+02 0.0093 22.7 10.8 94 24-141 37-135 (172)
453 PRK07313 phosphopantothenoylcy 25.6 4.5E+02 0.0098 22.9 10.5 55 379-434 108-179 (182)
454 TIGR02699 archaeo_AfpA archaeo 25.6 96 0.0021 27.0 3.8 33 18-50 9-42 (174)
455 cd03789 GT1_LPS_heptosyltransf 25.6 5.2E+02 0.011 24.0 9.3 88 21-140 139-226 (279)
456 PRK13057 putative lipid kinase 25.6 1.9E+02 0.0041 27.3 6.3 26 365-390 53-82 (287)
457 TIGR00173 menD 2-succinyl-5-en 25.5 3.2E+02 0.0069 27.7 8.2 27 363-389 64-96 (432)
458 TIGR00064 ftsY signal recognit 25.5 2.3E+02 0.0049 26.7 6.7 42 8-50 73-114 (272)
459 cd03412 CbiK_N Anaerobic cobal 25.5 1.4E+02 0.0029 24.4 4.5 37 269-305 1-39 (127)
460 PF01497 Peripla_BP_2: Peripla 25.4 99 0.0021 27.9 4.2 38 102-141 54-93 (238)
461 cd07038 TPP_PYR_PDC_IPDC_like 25.4 1.3E+02 0.0027 25.8 4.5 28 363-390 60-93 (162)
462 TIGR00313 cobQ cobyric acid sy 25.4 7.6E+02 0.016 25.4 12.1 31 14-45 6-36 (475)
463 PRK04761 ppnK inorganic polyph 25.4 54 0.0012 30.3 2.3 25 365-389 28-56 (246)
464 PLN02293 adenine phosphoribosy 25.4 2.3E+02 0.0051 24.9 6.3 44 93-138 47-92 (187)
465 PRK13011 formyltetrahydrofolat 25.3 5.9E+02 0.013 24.1 11.1 123 1-159 83-206 (286)
466 PRK08558 adenine phosphoribosy 25.3 1.5E+02 0.0032 27.3 5.3 38 99-138 102-141 (238)
467 PRK13768 GTPase; Provisional 25.2 2.9E+02 0.0063 25.6 7.3 39 8-47 3-41 (253)
468 PRK02842 light-independent pro 25.2 2.7E+02 0.0059 28.1 7.6 36 7-48 290-326 (427)
469 PRK14569 D-alanyl-alanine synt 25.2 1.3E+02 0.0029 28.6 5.1 39 5-44 1-43 (296)
470 PRK14974 cell division protein 25.1 2E+02 0.0042 28.1 6.3 43 7-50 140-182 (336)
471 PRK00885 phosphoribosylamine-- 25.0 2.4E+02 0.0053 28.3 7.3 31 8-43 1-31 (420)
472 PRK03501 ppnK inorganic polyph 24.9 1.3E+02 0.0029 28.1 4.9 55 360-436 39-98 (264)
473 PF06180 CbiK: Cobalt chelatas 24.8 1.1E+02 0.0024 28.6 4.3 38 269-306 1-41 (262)
474 CHL00072 chlL photochlorophyll 24.7 1.2E+02 0.0027 28.7 4.8 39 8-47 1-39 (290)
475 PRK13982 bifunctional SbtC-lik 24.7 1.3E+02 0.0028 30.9 5.1 50 7-58 70-119 (475)
476 PRK08533 flagellar accessory p 24.7 5.3E+02 0.012 23.4 10.4 47 7-54 24-70 (230)
477 PRK10353 3-methyl-adenine DNA 24.7 1.6E+02 0.0035 25.9 5.0 81 387-470 22-119 (187)
478 PRK08979 acetolactate synthase 24.6 6.2E+02 0.013 26.7 10.5 60 365-434 471-533 (572)
479 PF06506 PrpR_N: Propionate ca 24.6 63 0.0014 28.1 2.6 40 98-140 112-152 (176)
480 PRK13234 nifH nitrogenase redu 24.5 1.3E+02 0.0028 28.7 4.9 41 5-46 1-42 (295)
481 COG3340 PepE Peptidase E [Amin 24.5 3.2E+02 0.0069 24.7 6.8 47 257-304 22-68 (224)
482 TIGR01285 nifN nitrogenase mol 24.4 1.2E+02 0.0026 30.8 4.9 35 99-138 364-398 (432)
483 PLN02285 methionyl-tRNA formyl 24.3 5.9E+02 0.013 24.8 9.5 42 5-48 4-47 (334)
484 TIGR02012 tigrfam_recA protein 24.3 2.1E+02 0.0045 27.7 6.2 40 9-49 57-96 (321)
485 TIGR02201 heptsyl_trn_III lipo 24.3 6.5E+02 0.014 24.3 12.2 101 8-139 182-287 (344)
486 TIGR03457 sulphoacet_xsc sulfo 24.3 3.8E+02 0.0083 28.3 8.9 28 362-389 64-97 (579)
487 PRK13059 putative lipid kinase 24.3 2.8E+02 0.0061 26.3 7.2 26 365-390 59-90 (295)
488 COG2039 Pcp Pyrrolidone-carbox 24.2 1.6E+02 0.0034 26.0 4.7 40 8-47 1-44 (207)
489 TIGR01380 glut_syn glutathione 24.2 1.1E+02 0.0025 29.3 4.5 40 8-48 1-43 (312)
490 COG2120 Uncharacterized protei 23.8 1.4E+02 0.0029 27.5 4.7 41 4-45 7-47 (237)
491 PF10933 DUF2827: Protein of u 23.7 2.3E+02 0.005 27.8 6.2 89 343-451 252-347 (364)
492 COG0569 TrkA K+ transport syst 23.5 98 0.0021 28.2 3.7 33 8-46 1-33 (225)
493 COG0300 DltE Short-chain dehyd 23.4 3.3E+02 0.0073 25.5 7.2 36 7-46 5-40 (265)
494 PRK10586 putative oxidoreducta 23.3 6.3E+02 0.014 24.9 9.6 112 7-142 5-121 (362)
495 COG4081 Uncharacterized protei 23.3 1.4E+02 0.003 24.3 3.9 36 10-46 7-42 (148)
496 PRK08057 cobalt-precorrin-6x r 23.2 1.6E+02 0.0035 27.2 5.1 39 98-138 180-222 (248)
497 PRK12921 2-dehydropantoate 2-r 23.2 94 0.002 29.5 3.8 31 8-44 1-31 (305)
498 COG0177 Nth Predicted EndoIII- 23.1 1.6E+02 0.0034 26.5 4.7 47 419-471 66-112 (211)
499 cd01147 HemV-2 Metal binding p 23.0 1.2E+02 0.0025 28.0 4.3 35 103-139 69-106 (262)
500 TIGR00228 ruvC crossover junct 23.0 2.6E+02 0.0056 23.9 5.8 49 89-139 38-101 (156)
No 1
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=5.3e-69 Score=536.37 Aligned_cols=464 Identities=49% Similarity=0.918 Sum_probs=359.4
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHH-hcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCC-CCch
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLV-TLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVD-PDAA 84 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~ 84 (484)
+.||+++|+|++||++|++.||+.|+ ++ |+.|||++++.+..++.+..... ..+++..+|....+++ + .+.+
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~-g~~vT~v~t~~n~~~~~~~~~~~----~~i~~~~lp~p~~~gl-p~~~~~ 78 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANH-GFHVTVFVLETDAASAQSKFLNS----TGVDIVGLPSPDISGL-VDPSAH 78 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCC-CcEEEEEeCCCchhhhhhccccC----CCceEEECCCccccCC-CCCCcc
Confidence 56999999999999999999999998 68 99999999997654432322211 2488899987555443 3 2323
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCcccc
Q 043859 85 VVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVV 164 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 164 (484)
....+......+.+.++++++++..+|+|||+|.+.+|+..+|+++|||++.+++++++.++.+.+.|............
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~ 158 (481)
T PLN02992 79 VVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTV 158 (481)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccccccc
Confidence 33334445556778888888876457899999999999999999999999999999998887776665432211111111
Q ss_pred CCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCCCeEEec
Q 043859 165 QNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKVPIYTVG 244 (484)
Q Consensus 165 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p~~~~vG 244 (484)
..+.+.+||++.++..+++..+.......+..+.+....+.+++++++||+.+||..++.++++...+++...++++.||
T Consensus 159 ~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~VG 238 (481)
T PLN02992 159 QRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPIG 238 (481)
T ss_pred CCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEEec
Confidence 11245688988888888876444444445666677777778899999999999999999988653122211124699999
Q ss_pred cccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCC
Q 043859 245 PIIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGA 324 (484)
Q Consensus 245 pl~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 324 (484)
|++........+++|.+||+.+++++||||||||+..++.+++.+++.+|+.++.+|||+++.+.+...+..+|+...++
T Consensus 239 Pl~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~ 318 (481)
T PLN02992 239 PLCRPIQSSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGE 318 (481)
T ss_pred CccCCcCCCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccc
Confidence 99764222223467999999998899999999999999999999999999999999999997542211111122211000
Q ss_pred CCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceeecccccccchhHHHHHhh
Q 043859 325 GDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEE 404 (484)
Q Consensus 325 ~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~ 404 (484)
..++....+|++|.++++..|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||++++++
T Consensus 319 ~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~ 398 (481)
T PLN02992 319 TRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDE 398 (481)
T ss_pred cccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHH
Confidence 00111245899999999999999999999999999999999999999999999999999999999999999999999568
Q ss_pred hcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhc--CCCChHHHHHHHHHHHhhhhh
Q 043859 405 LGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTR--ESGSSYSSLARLAKECGMMTK 479 (484)
Q Consensus 405 ~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~--~~g~~~~~~~~~~~~~~~~~~ 479 (484)
+|+|+.++. .+..++.++|+++|+++|.+++|+.+|++|+++++.+++|+ . +||||++++++|++++.+..+
T Consensus 399 ~g~gv~~~~--~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av-~~~~GGSS~~~l~~~v~~~~~~~~ 472 (481)
T PLN02992 399 LGIAVRSDD--PKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSL-SIDGGGVAHESLCRVTKECQRFLE 472 (481)
T ss_pred hCeeEEecC--CCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh-cCCCCCchHHHHHHHHHHHHHHHH
Confidence 999999862 11358999999999999998888889999999999999999 6 499999999999999988754
No 2
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=8e-67 Score=517.63 Aligned_cols=463 Identities=52% Similarity=0.972 Sum_probs=354.8
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHH-HHHhhhccCCCceEEEecCCCCCCCCCCCCc
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAE-SKILQSAMSSKLCHVIEIPAPDISGLVDPDA 83 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 83 (484)
|.+.||+++|+|++||++|++.||+.|+.++|..|||++++.....+. +..+........+++.++|....+++-+.+.
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~ 80 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDA 80 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCc
Confidence 457799999999999999999999999964379999999886543321 1112211101148999999655433202222
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCC-eEEEecccHHHHHHHHhhccccccccCcc
Q 043859 84 AVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIP-KYVYVGTNAWCVALFVYAPTLDKTVQGQY 162 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP-~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 162 (484)
+....+....+.+.+.++++++++..+|+|||+|.+.+|+..+|+++||| .+.+++++++.+..+.++|..........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~ 160 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEY 160 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccccccc
Confidence 34445666677788889999988755789999999999999999999999 58888888887777777665432222111
Q ss_pred ccCCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCCCeEE
Q 043859 163 VVQNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKVPIYT 242 (484)
Q Consensus 163 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p~~~~ 242 (484)
....+.+.+||++.++..+++..+.......+..+.+..+...+++++++|||.+||+.++..+++..-.++-..++++.
T Consensus 161 ~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~ 240 (470)
T PLN03015 161 VDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYP 240 (470)
T ss_pred CCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCceEE
Confidence 11123466899998999998865544433345566666667888999999999999999998886631111100246999
Q ss_pred eccccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCC
Q 043859 243 VGPIIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGS 322 (484)
Q Consensus 243 vGpl~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 322 (484)
|||++......+.++++.+||+.+++++||||||||+...+.+++.+++.+|+.++.+|||+++.+.... ++...
T Consensus 241 VGPl~~~~~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~--~~~~~--- 315 (470)
T PLN03015 241 IGPIVRTNVHVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYL--GASSS--- 315 (470)
T ss_pred ecCCCCCcccccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCcccc--ccccc---
Confidence 9999843221123457999999998899999999999999999999999999999999999997542100 00000
Q ss_pred CCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceeecccccccchhHHHHH
Q 043859 323 GAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATILT 402 (484)
Q Consensus 323 ~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~ 402 (484)
..++....+|++|.++++..++++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||++++
T Consensus 316 --~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~ 393 (470)
T PLN03015 316 --DDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLT 393 (470)
T ss_pred --cccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHH
Confidence 000012468999999999889998899999999999999999999999999999999999999999999999999997
Q ss_pred hhhcceEEeeecCCCCccCHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHh
Q 043859 403 EELGVAIRSKVLPSKGVVGREEIKTMVRRILVD--EEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECG 475 (484)
Q Consensus 403 ~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~--~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~ 475 (484)
+.+|+|+++...+.+..++.++|+++|+++|.+ ++|+.+|+||++|++.+++|+ ++|||+++++++|++++.
T Consensus 394 ~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av-~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 394 EEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAW-SHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHhcc
Confidence 899999998411111368999999999999963 568899999999999999999 999999999999998863
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.6e-66 Score=513.95 Aligned_cols=438 Identities=28% Similarity=0.455 Sum_probs=338.0
Q ss_pred CCCCCCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCC-CC
Q 043859 1 MESSSSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISG-LV 79 (484)
Q Consensus 1 m~~~~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~ 79 (484)
|++.+.++||+++|+|++||++|++.||+.|+.+ |+.|||++++.+... .. ... ..+++..+|.. ++. ..
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~-G~~VT~v~T~~n~~~---~~-~~~---~~i~~~~ip~g-lp~~~~ 71 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLK-GFSITIAQTKFNYFS---PS-DDF---TDFQFVTIPES-LPESDF 71 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcC-CCEEEEEeCcccccc---cc-cCC---CCeEEEeCCCC-CCcccc
Confidence 8888889999999999999999999999999999 999999999965311 10 111 24888888742 211 10
Q ss_pred CCCchHHHHHHHHHHHhhHHHHHHHHhc----CCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhcccc
Q 043859 80 DPDAAVVTIISVIMREIKPAFRSAISAL----KTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLD 155 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~ 155 (484)
. .......+......+.+.++++++++ ..+++|||+|.+.+|+..+|+++|||++.+++++++.+.++.+.+...
T Consensus 72 ~-~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 150 (451)
T PLN02410 72 K-NLGPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLY 150 (451)
T ss_pred c-ccCHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHH
Confidence 1 11122233334445666777777765 235799999999999999999999999999999998887776554332
Q ss_pred cc---ccCccccCCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhcccc
Q 043859 156 KT---VQGQYVVQNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSL 232 (484)
Q Consensus 156 ~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 232 (484)
.. .+...........+|++++++..+++.............+.. ...+.+++++++|||.+||+.++.++.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~~~l~~~--- 226 (451)
T PLN02410 151 ANNVLAPLKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRN-TVDKRTASSVIINTASCLESSSLSRLQQQ--- 226 (451)
T ss_pred hccCCCCccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHH-HhhcccCCEEEEeChHHhhHHHHHHHHhc---
Confidence 21 010000011234588888777777775433222222222222 22456788999999999999999998764
Q ss_pred CCCCC-CCeEEeccccCCCC-CC---CCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeC
Q 043859 233 GRITK-VPIYTVGPIIRRLG-PA---GSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRL 307 (484)
Q Consensus 233 ~rp~~-p~~~~vGpl~~~~~-~~---~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 307 (484)
. +++++|||++.... +. ....+|.+||+++++++||||||||....+.+++.+++.+|+.++.+|||+++.
T Consensus 227 ----~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~ 302 (451)
T PLN02410 227 ----LQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRP 302 (451)
T ss_pred ----cCCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEcc
Confidence 3 46999999975321 11 123457899999988999999999999999999999999999999999999974
Q ss_pred CCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceee
Q 043859 308 PNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIV 387 (484)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~ 387 (484)
.... +++....+|++|.++++.+++++ +|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 303 ~~~~--------------~~~~~~~lp~~f~er~~~~g~v~-~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~ 367 (451)
T PLN02410 303 GSVR--------------GSEWIESLPKEFSKIISGRGYIV-KWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMIC 367 (451)
T ss_pred Cccc--------------ccchhhcCChhHHHhccCCeEEE-ccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEe
Confidence 3210 01011348999999998766555 99999999999999999999999999999999999999
Q ss_pred cccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHH
Q 043859 388 WPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSL 467 (484)
Q Consensus 388 ~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~ 467 (484)
+|+++||+.||+++++.+|+|+.+. ..+++++|+++|+++|.+++|+.||++|++|++.+++|+ .+|||+++++
T Consensus 368 ~P~~~DQ~~na~~~~~~~~~G~~~~-----~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~-~~gGsS~~~l 441 (451)
T PLN02410 368 KPFSSDQKVNARYLECVWKIGIQVE-----GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASV-ISGGSSHNSL 441 (451)
T ss_pred ccccccCHHHHHHHHHHhCeeEEeC-----CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHh-cCCCCHHHHH
Confidence 9999999999999966679999986 578999999999999998778899999999999999999 9999999999
Q ss_pred HHHHHHHhhh
Q 043859 468 ARLAKECGMM 477 (484)
Q Consensus 468 ~~~~~~~~~~ 477 (484)
++|++.++.+
T Consensus 442 ~~fv~~~~~~ 451 (451)
T PLN02410 442 EEFVHFMRTL 451 (451)
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 4
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.1e-65 Score=515.79 Aligned_cols=447 Identities=29% Similarity=0.457 Sum_probs=343.1
Q ss_pred CCCC--CCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCC
Q 043859 1 MESS--SSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGL 78 (484)
Q Consensus 1 m~~~--~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 78 (484)
|.+. .+++||+++|+|++||++|++.||+.|+.+ |+.|||++++.+..++.+.. ... ..+++..+|.+....+
T Consensus 1 ~~~~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~-G~~VTfv~T~~n~~~~~~~~-~~~---~~i~~~~lp~P~~~~l 75 (477)
T PLN02863 1 MTELNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALR-GLTITVLVTPKNLPFLNPLL-SKH---PSIETLVLPFPSHPSI 75 (477)
T ss_pred CcccccCCCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCCcHHHHhhhc-ccC---CCeeEEeCCCCCcCCC
Confidence 4444 557999999999999999999999999999 99999999998765543321 111 2478877775443332
Q ss_pred CCCCch--------HHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHh
Q 043859 79 VDPDAA--------VVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVY 150 (484)
Q Consensus 79 ~~~~~~--------~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~ 150 (484)
+.+.+ ....+........+.+.+++++...+|+|||+|.+.+|+..+|+++|||++.+++++++.++.+.+
T Consensus 76 -PdG~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~ 154 (477)
T PLN02863 76 -PSGVENVKDLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYS 154 (477)
T ss_pred -CCCCcChhhcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHH
Confidence 32211 112233444455666777777644478999999999999999999999999999999999888877
Q ss_pred hccccccccCccccCCcc---ccCCCCCCCCcCCCCCcccc--CCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHH
Q 043859 151 APTLDKTVQGQYVVQNES---FNIPGCRPLRPEDVVDPMLD--RTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTA 225 (484)
Q Consensus 151 ~p~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 225 (484)
++...... .......+. ..+||++.++..+++..+.. ........+.+.......++++++||+.+||+.++.+
T Consensus 155 ~~~~~~~~-~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 233 (477)
T PLN02863 155 LWREMPTK-INPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEH 233 (477)
T ss_pred Hhhccccc-ccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHH
Confidence 64321100 000011111 24788888888888765432 2223334444445445667789999999999999999
Q ss_pred HhhccccCCCCCCCeEEeccccCCCC-C-------C---CCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHH
Q 043859 226 LRDDKSLGRITKVPIYTVGPIIRRLG-P-------A---GSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGL 294 (484)
Q Consensus 226 ~~~~~~~~rp~~p~~~~vGpl~~~~~-~-------~---~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al 294 (484)
+++. ++ .++++.|||++.... . . ..++++.+||+.+++++||||||||+...+.+++.+++.+|
T Consensus 234 ~~~~--~~---~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL 308 (477)
T PLN02863 234 LKKE--LG---HDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGL 308 (477)
T ss_pred HHhh--cC---CCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHH
Confidence 8764 11 156999999974311 0 0 02357999999998899999999999888999999999999
Q ss_pred hhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchh
Q 043859 295 ELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNS 374 (484)
Q Consensus 295 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs 374 (484)
+.++.+|||+++.+.. .+.....+|++|.++++..|+++.+|+||.+||+|+++++|||||||||
T Consensus 309 ~~~~~~flw~~~~~~~---------------~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS 373 (477)
T PLN02863 309 EKSGVHFIWCVKEPVN---------------EESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNS 373 (477)
T ss_pred HhCCCcEEEEECCCcc---------------cccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchH
Confidence 9999999999964321 0001246889999999888999999999999999999999999999999
Q ss_pred HHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 043859 375 TLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQK 454 (484)
Q Consensus 375 ~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~ 454 (484)
++||+++|||||++|+++||+.||+++++++|+|+++... .....+.+++.++|+++|.+ ++.||+||+++++.+++
T Consensus 374 ~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~-~~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~ 450 (477)
T PLN02863 374 VLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEG-ADTVPDSDELARVFMESVSE--NQVERERAKELRRAALD 450 (477)
T ss_pred HHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccC-CCCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986789999998521 11346899999999999952 23599999999999999
Q ss_pred hhhcCCCChHHHHHHHHHHHhhhh
Q 043859 455 AWTRESGSSYSSLARLAKECGMMT 478 (484)
Q Consensus 455 a~~~~~g~~~~~~~~~~~~~~~~~ 478 (484)
|+ .+|||++.++++|++++.++.
T Consensus 451 Av-~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 451 AI-KERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred Hh-ccCCcHHHHHHHHHHHHHHhc
Confidence 99 999999999999999998764
No 5
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=2e-65 Score=515.74 Aligned_cols=458 Identities=38% Similarity=0.631 Sum_probs=351.5
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCC----CeEEEEecCCCch----hHHHHHhhhccCCCceEEEecCCCCCC
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYN----FQVTIFVVASQTS----AAESKILQSAMSSKLCHVIEIPAPDIS 76 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~G----h~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~ 76 (484)
|.|.|||++|+|++||++|++.||+.|+.+ | +.|||++++.... ++....-.....+..+++.++|....
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~-g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~- 78 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLAS-SGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEP- 78 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhC-CCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCC-
Confidence 467899999999999999999999999998 6 7999999886532 22222111111112489999986432
Q ss_pred CCCCCCc-hHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhcccc
Q 043859 77 GLVDPDA-AVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLD 155 (484)
Q Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~ 155 (484)
+.+. .....+......+.+.++++++++..+++|||+|.+.+|+..+|+++|||++.|++++++.++.+.+.+...
T Consensus 79 ---p~~~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 79 ---PTDAAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred ---CCccccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 2221 222333445666777888888876335699999999999999999999999999999999988888776543
Q ss_pred ccccCccccCCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhcc-ccCC
Q 043859 156 KTVQGQYVVQNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDK-SLGR 234 (484)
Q Consensus 156 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~r 234 (484)
.............+.+||++.++..+++..+.......+..+....+...+++++++||+.+||+.++.+++... ..+.
T Consensus 156 ~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~ 235 (480)
T PLN00164 156 EEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGR 235 (480)
T ss_pred ccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccccC
Confidence 322111111113356899988888899876544433334455555666778889999999999999999887641 1111
Q ss_pred CCCCCeEEeccccCCC-C--CCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCC
Q 043859 235 ITKVPIYTVGPIIRRL-G--PAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNET 311 (484)
Q Consensus 235 p~~p~~~~vGpl~~~~-~--~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 311 (484)
+ .|+++.|||++... . ....++++.+||+.+++++||||||||+...+.+++.+++.+|+.++.+|||+++.+...
T Consensus 236 ~-~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~ 314 (480)
T PLN00164 236 P-APTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAA 314 (480)
T ss_pred C-CCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 1 35799999997421 1 112356799999999889999999999988899999999999999999999999754210
Q ss_pred CCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceeecccc
Q 043859 312 TGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLY 391 (484)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~ 391 (484)
. ..... +......+|++|.++++..++++.+|+||.+||+|+++++|||||||||++|++++|||||++|++
T Consensus 315 ~----~~~~~----~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~ 386 (480)
T PLN00164 315 G----SRHPT----DADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLY 386 (480)
T ss_pred c----ccccc----ccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCcc
Confidence 0 00000 000123588999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHhhhcceEEeeecCC-CCccCHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHhhhcCCCChHHHHH
Q 043859 392 SEQRMNATILTEELGVAIRSKVLPS-KGVVGREEIKTMVRRILVDE--EGYEIRAKVKELQRSAQKAWTRESGSSYSSLA 468 (484)
Q Consensus 392 ~DQ~~na~rv~~~~G~g~~l~~~~~-~~~~~~~~l~~~i~~vl~~~--~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~ 468 (484)
+||+.||+++++++|+|+.+...++ +..++.++|.++|+++|.++ +|+.+|++|++|++.+++|+ .+|||++++++
T Consensus 387 ~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~-~~gGSS~~~l~ 465 (480)
T PLN00164 387 AEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAV-EEGGSSYAALQ 465 (480)
T ss_pred ccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHH
Confidence 9999999988667999999853111 12479999999999999874 47889999999999999999 99999999999
Q ss_pred HHHHHHhhh
Q 043859 469 RLAKECGMM 477 (484)
Q Consensus 469 ~~~~~~~~~ 477 (484)
+|++++.+.
T Consensus 466 ~~v~~~~~~ 474 (480)
T PLN00164 466 RLAREIRHG 474 (480)
T ss_pred HHHHHHHhc
Confidence 999998653
No 6
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.6e-65 Score=511.29 Aligned_cols=450 Identities=25% Similarity=0.354 Sum_probs=344.0
Q ss_pred CCCCCCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHH--HHhhh--ccC-CCceEEEecCCCCC
Q 043859 1 MESSSSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAES--KILQS--AMS-SKLCHVIEIPAPDI 75 (484)
Q Consensus 1 m~~~~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~--~~~~~--~~~-~~~~~~~~~p~~~~ 75 (484)
|+++..+.||+++|+|++||++|++.||+.|+.+ |..|||++++.+..++.+ ..... .+. ...++|..+|. .+
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~-G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pd-gl 78 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASK-GLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFED-GW 78 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhC-CCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCC-CC
Confidence 8999999999999999999999999999999999 999999999976554332 11010 010 01255555542 11
Q ss_pred CCCCCCCchHHHHHHHHHHHhhHHHHHHHHhcC--CC-CeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhc
Q 043859 76 SGLVDPDAAVVTIISVIMREIKPAFRSAISALK--TT-PTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAP 152 (484)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~-pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p 152 (484)
++..+...+....+......+.+.++++++++. .+ ++|||+|.+..|+..+|+++|||.+++++++++.+..+.+++
T Consensus 79 p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 79 AEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred CCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 111011112222333344456677888887652 24 499999999999999999999999999999999888877764
Q ss_pred cccccccCccccCCccccCCCCCCCCcCCCCCcccc--CCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhcc
Q 043859 153 TLDKTVQGQYVVQNESFNIPGCRPLRPEDVVDPMLD--RTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDK 230 (484)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 230 (484)
........ .......+.+||++.++..+++..+.. .....++.+.+..+...+++++++|||.+||..++..+++.
T Consensus 159 ~~~~~~~~-~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~- 236 (480)
T PLN02555 159 HGLVPFPT-ETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKL- 236 (480)
T ss_pred hcCCCccc-ccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhC-
Confidence 21101111 010113356899988888888876532 12234455666666778889999999999999999888654
Q ss_pred ccCCCCCCCeEEeccccCCCC---C------CCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcE
Q 043859 231 SLGRITKVPIYTVGPIIRRLG---P------AGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRF 301 (484)
Q Consensus 231 ~~~rp~~p~~~~vGpl~~~~~---~------~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~ 301 (484)
.| ++.|||++.... . ...+++|.+||+.+++++||||||||+...+.+++.+++.+++.++++|
T Consensus 237 ------~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~f 309 (480)
T PLN02555 237 ------CP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSF 309 (480)
T ss_pred ------CC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeE
Confidence 44 999999974311 1 0234679999999988899999999999899999999999999999999
Q ss_pred EEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhc
Q 043859 302 IWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITN 381 (484)
Q Consensus 302 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~ 381 (484)
||+++..... .+.....+|+++.++.+.+ ..+.+|+||.+||+|+++++|||||||||++||+++
T Consensus 310 lW~~~~~~~~--------------~~~~~~~lp~~~~~~~~~~-g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~ 374 (480)
T PLN02555 310 LWVMRPPHKD--------------SGVEPHVLPEEFLEKAGDK-GKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSS 374 (480)
T ss_pred EEEEecCccc--------------ccchhhcCChhhhhhcCCc-eEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHc
Confidence 9999643110 0001245788888877654 455599999999999999999999999999999999
Q ss_pred CCceeecccccccchhHHHHHhhhcceEEeeecC-CCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCC
Q 043859 382 GVPMIVWPLYSEQRMNATILTEELGVAIRSKVLP-SKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRES 460 (484)
Q Consensus 382 GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~-~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~ 460 (484)
|||||++|+++||+.||+++++.+|+|+++...+ .+..++.++|.++|+++|.+++|+.+|+||++|++.+++|+ .+|
T Consensus 375 GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~-~eg 453 (480)
T PLN02555 375 GVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAV-AEG 453 (480)
T ss_pred CCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh-cCC
Confidence 9999999999999999999976779999984211 11468999999999999998888899999999999999999 999
Q ss_pred CChHHHHHHHHHHHhhh
Q 043859 461 GSSYSSLARLAKECGMM 477 (484)
Q Consensus 461 g~~~~~~~~~~~~~~~~ 477 (484)
||+++++++|++++.+.
T Consensus 454 GSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 454 GSSDRNFQEFVDKLVRK 470 (480)
T ss_pred CcHHHHHHHHHHHHHhc
Confidence 99999999999998765
No 7
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.6e-64 Score=500.81 Aligned_cols=445 Identities=29% Similarity=0.572 Sum_probs=336.2
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCC--CeEEEEecCCCchhHHHHHhhhcc-CCCceEEEecCCCCCCCCCCC
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYN--FQVTIFVVASQTSAAESKILQSAM-SSKLCHVIEIPAPDISGLVDP 81 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~G--h~Vt~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~ 81 (484)
|++.||+|+|+|++||++|++.||+.|+.+ | ..|||++++.......+..+.... ....++|..+|.......-..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~-gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 79 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQ-DDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGG 79 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhC-CCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCcccc
Confidence 467899999999999999999999999998 7 999999999765211122222111 112489999994221110011
Q ss_pred CchHHHHHHHHHHHhhH----HHHHHHHhcC---CCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccc
Q 043859 82 DAAVVTIISVIMREIKP----AFRSAISALK---TTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTL 154 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~----~l~~~l~~~~---~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~ 154 (484)
..+....+....+.+.+ .+.+++++.. ++++|||+|.+.+|+..+|+++|||.+.+++++++.++.+.+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~ 159 (468)
T PLN02207 80 TQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADR 159 (468)
T ss_pred ccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhc
Confidence 11233334444444533 3445554431 2349999999999999999999999999999999888888776543
Q ss_pred cccccCc-cccCCccccCCCC-CCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhcccc
Q 043859 155 DKTVQGQ-YVVQNESFNIPGC-RPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSL 232 (484)
Q Consensus 155 ~~~~~~~-~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 232 (484)
....... .......+.+||+ +.++..+++..+.... . +..+.+......+++++++||+.+||..++..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~-~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~---- 233 (468)
T PLN02207 160 HSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED-G-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLD---- 233 (468)
T ss_pred cccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCc-c-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHh----
Confidence 3211000 0011133568998 5788888887653222 1 44555666677888999999999999998888754
Q ss_pred CCCCCCCeEEeccccCCCCC-C-----CCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEe
Q 043859 233 GRITKVPIYTVGPIIRRLGP-A-----GSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVR 306 (484)
Q Consensus 233 ~rp~~p~~~~vGpl~~~~~~-~-----~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 306 (484)
+|..|+++.|||++..... . ..++++.+||+.+++++||||||||+...+.+++++++.+|+.++++|||+++
T Consensus 234 -~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r 312 (468)
T PLN02207 234 -EQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLR 312 (468)
T ss_pred -ccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEe
Confidence 1225779999999853211 1 11257999999998889999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCcee
Q 043859 307 LPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMI 386 (484)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v 386 (484)
.+.. . ....+|++|.++.+.++ .+.+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 313 ~~~~---------------~--~~~~lp~~f~er~~~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l 374 (468)
T PLN02207 313 TEEV---------------T--NDDLLPEGFLDRVSGRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIV 374 (468)
T ss_pred CCCc---------------c--ccccCCHHHHhhcCCCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEE
Confidence 4321 0 12468899998887655 4559999999999999999999999999999999999999
Q ss_pred ecccccccchhHHHHHhhhcceEEeee---cCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCCh
Q 043859 387 VWPLYSEQRMNATILTEELGVAIRSKV---LPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSS 463 (484)
Q Consensus 387 ~~P~~~DQ~~na~rv~~~~G~g~~l~~---~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~ 463 (484)
++|+++||+.||+++++++|+|+++.. .+.+..++.++|+++|+++|.+ +++.||+||++|++.+++|+ .+|||+
T Consensus 375 ~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~-~~GGSS 452 (468)
T PLN02207 375 TWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRAT-KNGGSS 452 (468)
T ss_pred ecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHh-cCCCcH
Confidence 999999999999988667999998741 1111346999999999999973 35669999999999999999 999999
Q ss_pred HHHHHHHHHHHhhh
Q 043859 464 YSSLARLAKECGMM 477 (484)
Q Consensus 464 ~~~~~~~~~~~~~~ 477 (484)
++++++|++++.-.
T Consensus 453 ~~~l~~~v~~~~~~ 466 (468)
T PLN02207 453 FAAIEKFIHDVIGI 466 (468)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998643
No 8
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=2.5e-64 Score=504.60 Aligned_cols=433 Identities=22% Similarity=0.365 Sum_probs=327.2
Q ss_pred CCCC-CCCCeEEEEcCCCccChHHHHHHHHH--HHhcCCCeEEEEecCCCchhHHHHHhhhccC-CCceEEEecCCCCCC
Q 043859 1 MESS-SSKPHAVLLASPGVGHVIPVLELGKR--LVTLYNFQVTIFVVASQTSAAESKILQSAMS-SKLCHVIEIPAPDIS 76 (484)
Q Consensus 1 m~~~-~~~~~il~~~~p~~GHv~P~l~La~~--L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~ 76 (484)
|++. .++.||+++|+|++||++|++.||++ |.+| |+.|||++++.+.+++ +..+. ...+++..+|. .++
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~-G~~VT~v~t~~~~~~~-----~~~~~~~~~~~~~~~~~-glp 73 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSK-NLHFTLATTEQARDLL-----STVEKPRRPVDLVFFSD-GLP 73 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcC-CcEEEEEeccchhhhh-----ccccCCCCceEEEECCC-CCC
Confidence 4444 55689999999999999999999999 5588 9999999999875443 22111 12366665552 122
Q ss_pred CCCCCCchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccc
Q 043859 77 GLVDPDAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDK 156 (484)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~ 156 (484)
+... .+....+....+.+.+.+++++++. +|||||+|.+.+|+..+|+++|||.+.+++++++.+..+.+++....
T Consensus 74 ~~~~--~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~ 149 (456)
T PLN02210 74 KDDP--RAPETLLKSLNKVGAKNLSKIIEEK--RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTN 149 (456)
T ss_pred CCcc--cCHHHHHHHHHHhhhHHHHHHHhcC--CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccC
Confidence 1111 1222233334445666778888777 89999999999999999999999999999999988777665432111
Q ss_pred cccCccccCCccccCCCCCCCCcCCCCCccccCCchhHHHHH-HhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCC
Q 043859 157 TVQGQYVVQNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYV-HIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRI 235 (484)
Q Consensus 157 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp 235 (484)
..+ ...+......+|+++.++..+++..+.......+.... +........+++++||+.+||..++..+++
T Consensus 150 ~~~-~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~------- 221 (456)
T PLN02210 150 SFP-DLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD------- 221 (456)
T ss_pred CCC-cccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-------
Confidence 111 11111123458888877888887655443332233333 232345667899999999999998887754
Q ss_pred CCCCeEEeccccCC----CCCC-----------CCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCc
Q 043859 236 TKVPIYTVGPIIRR----LGPA-----------GSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQR 300 (484)
Q Consensus 236 ~~p~~~~vGpl~~~----~~~~-----------~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 300 (484)
.+++++|||++.. .... ..+++|.+||+.++++++|||||||+...+.+++++++.+|+.++.+
T Consensus 222 -~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~ 300 (456)
T PLN02210 222 -LKPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVP 300 (456)
T ss_pred -cCCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCC
Confidence 2469999999741 1100 12356889999998889999999999888999999999999999999
Q ss_pred EEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhc-CCceEecCCcchhhhccCCCccccccccCchhHHHHH
Q 043859 301 FIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTL-DIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESI 379 (484)
Q Consensus 301 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal 379 (484)
|||+++.... ...++.+.++.. ..++ +.+|+||.+||+|+++++|||||||||++|++
T Consensus 301 flw~~~~~~~--------------------~~~~~~~~~~~~~~~g~-v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai 359 (456)
T PLN02210 301 FLWVIRPKEK--------------------AQNVQVLQEMVKEGQGV-VLEWSPQEKILSHMAISCFVTHCGWNSTIETV 359 (456)
T ss_pred EEEEEeCCcc--------------------ccchhhHHhhccCCCeE-EEecCCHHHHhcCcCcCeEEeeCCcccHHHHH
Confidence 9999964311 112345666553 4454 55999999999999999999999999999999
Q ss_pred hcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcC
Q 043859 380 TNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRE 459 (484)
Q Consensus 380 ~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~ 459 (484)
++|||||++|+++||+.||+++++.+|+|+.+...+.+..++.++|+++|+++|.+++|+.+|+||++|++.+++|+ ++
T Consensus 360 ~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av-~~ 438 (456)
T PLN02210 360 VAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLAL-AP 438 (456)
T ss_pred HcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh-cC
Confidence 99999999999999999999996459999998631111368999999999999998888899999999999999999 99
Q ss_pred CCChHHHHHHHHHHHh
Q 043859 460 SGSSYSSLARLAKECG 475 (484)
Q Consensus 460 ~g~~~~~~~~~~~~~~ 475 (484)
|||+++++++|++++.
T Consensus 439 gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 439 GGSSARNLDLFISDIT 454 (456)
T ss_pred CCcHHHHHHHHHHHHh
Confidence 9999999999999874
No 9
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=5.2e-64 Score=502.54 Aligned_cols=446 Identities=26% Similarity=0.437 Sum_probs=336.6
Q ss_pred CCCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCc
Q 043859 4 SSSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDA 83 (484)
Q Consensus 4 ~~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 83 (484)
+.+++||+++|+|++||++|++.||+.|+.+ |+.|||++++.+..++....-.....+..++|+++|.+..++.++.+.
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~ 83 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAER-GVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGC 83 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhC-CCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCc
Confidence 3456899999999999999999999999999 999999999987654433221111111238999998543221123321
Q ss_pred ---------hHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccc
Q 043859 84 ---------AVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTL 154 (484)
Q Consensus 84 ---------~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~ 154 (484)
+....+......+.+.+.+++++...+|+|||+|.+.+|+..+|+++|||.+.|++++++....+..+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 163 (491)
T PLN02534 84 ENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLH 163 (491)
T ss_pred cccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHh
Confidence 12223334445566777777776444789999999999999999999999999999998877664432111
Q ss_pred cccccCccccCCccccCCCCCC---CCcCCCCCccccCCchhHHHHHHhhhc-ccCccEEEEcChhhhcHHHHHHHhhcc
Q 043859 155 DKTVQGQYVVQNESFNIPGCRP---LRPEDVVDPMLDRTNQQYFEYVHIGEE-IPLSDGILVNTWEDLQPTALTALRDDK 230 (484)
Q Consensus 155 ~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~~~~~~~~~~~ 230 (484)
.... ........+.+|+++. ++..+++..+... ..+..+...... ...++++++||+.+||+.++.++++.
T Consensus 164 ~~~~--~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~- 238 (491)
T PLN02534 164 NAHL--SVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL--PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKA- 238 (491)
T ss_pred cccc--cCCCCCceeecCCCCccccccHHHCChhhcCc--ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhh-
Confidence 1110 0111223456788764 6666676543221 123344444433 24567999999999999999988764
Q ss_pred ccCCCCC-CCeEEeccccCCCC--------C--CC-CccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCC
Q 043859 231 SLGRITK-VPIYTVGPIIRRLG--------P--AG-SWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQ 298 (484)
Q Consensus 231 ~~~rp~~-p~~~~vGpl~~~~~--------~--~~-~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~ 298 (484)
+ ++++.|||++.... . .. ..++|.+||+.+++++||||||||......+++.+++.+|+.++
T Consensus 239 ------~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~ 312 (491)
T PLN02534 239 ------IKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASK 312 (491)
T ss_pred ------cCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCC
Confidence 3 46999999974211 0 01 23468999999988999999999999999999999999999999
Q ss_pred CcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHH
Q 043859 299 QRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLES 378 (484)
Q Consensus 299 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~ea 378 (484)
.+|||+++.+... .+.....+|++|.++++..|+++.+|+||.+||+|+++++|||||||||++||
T Consensus 313 ~~flW~~r~~~~~--------------~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea 378 (491)
T PLN02534 313 KPFIWVIKTGEKH--------------SELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEG 378 (491)
T ss_pred CCEEEEEecCccc--------------cchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHH
Confidence 9999999743110 00001246889998888889999999999999999999999999999999999
Q ss_pred HhcCCceeecccccccchhHHHHHhhhcceEEeeec------CCC---CccCHHHHHHHHHHHhc--ccchHHHHHHHHH
Q 043859 379 ITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVL------PSK---GVVGREEIKTMVRRILV--DEEGYEIRAKVKE 447 (484)
Q Consensus 379 l~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~------~~~---~~~~~~~l~~~i~~vl~--~~~~~~~~~~a~~ 447 (484)
+++|||||++|++.||+.||+++++.+|+|+++... +.+ ...+.++|.++|+++|. +++|+.+|+||++
T Consensus 379 ~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~e 458 (491)
T PLN02534 379 ICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQE 458 (491)
T ss_pred HHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 999999999999999999999998899999988410 010 13799999999999997 4568889999999
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHhh
Q 043859 448 LQRSAQKAWTRESGSSYSSLARLAKECGM 476 (484)
Q Consensus 448 l~~~~~~a~~~~~g~~~~~~~~~~~~~~~ 476 (484)
|++.+++|+ .+||||++++++|++++.+
T Consensus 459 lk~~a~~Av-~~GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 459 LGVMARKAM-ELGGSSHINLSILIQDVLK 486 (491)
T ss_pred HHHHHHHHh-cCCCcHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999864
No 10
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.2e-64 Score=498.58 Aligned_cols=422 Identities=24% Similarity=0.395 Sum_probs=331.5
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCC-CCCCCch
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISG-LVDPDAA 84 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~ 84 (484)
++.||+++|+|++||++|++.||+.|+.+ |+.|||++++.+..++.. .. ...+++..+|. .+++ ......+
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~-G~~vT~v~t~~~~~~~~~----~~--~~~i~~~~ipd-glp~~~~~~~~~ 75 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSK-GFKTTHTLTTFIFNTIHL----DP--SSPISIATISD-GYDQGGFSSAGS 75 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcC-CCEEEEEECCchhhhccc----CC--CCCEEEEEcCC-CCCCcccccccC
Confidence 34699999999999999999999999999 999999999975433211 11 12489999884 2221 1011112
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhc--CCCC-eEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCc
Q 043859 85 VVTIISVIMREIKPAFRSAISAL--KTTP-TALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQ 161 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~--~~~p-D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 161 (484)
....+......+.+.++++++++ ..+| +|||+|.+.+|+..+|+++|||++.+++++++.+..+.+ +....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~~~----- 149 (449)
T PLN02173 76 VPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYINN----- 149 (449)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHhcc-----
Confidence 32333334446677888888875 2245 999999999999999999999999999988877655432 11110
Q ss_pred cccCCccccCCCCCCCCcCCCCCccccC--CchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCCC
Q 043859 162 YVVQNESFNIPGCRPLRPEDVVDPMLDR--TNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKVP 239 (484)
Q Consensus 162 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p~ 239 (484)
....+.+|+++.++..+++..+... ....+..+.+......+++++++||+.+||+.++.+++.. ++
T Consensus 150 ---~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--------~~ 218 (449)
T PLN02173 150 ---GSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV--------CP 218 (449)
T ss_pred ---CCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--------CC
Confidence 1122457888888888888765422 2234455666667778889999999999999998887542 46
Q ss_pred eEEeccccCC--------CCCC--------CCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEE
Q 043859 240 IYTVGPIIRR--------LGPA--------GSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIW 303 (484)
Q Consensus 240 ~~~vGpl~~~--------~~~~--------~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 303 (484)
++.|||++.. .... +.+++|.+||+.++++++|||||||+...+.+++.+++.+| ++.+|+|
T Consensus 219 v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flW 296 (449)
T PLN02173 219 VLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLW 296 (449)
T ss_pred eeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEE
Confidence 9999999731 0000 11345899999998899999999999989999999999999 6778999
Q ss_pred EEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCC
Q 043859 304 VVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGV 383 (484)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~Gv 383 (484)
+++... ...+|+++.++.+.+|+++.+|+||.+||+|++|++|||||||||++|++++||
T Consensus 297 vvr~~~--------------------~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GV 356 (449)
T PLN02173 297 VVRASE--------------------ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGV 356 (449)
T ss_pred EEeccc--------------------hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCC
Confidence 996431 134788898888777888889999999999999999999999999999999999
Q ss_pred ceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCCh
Q 043859 384 PMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSS 463 (484)
Q Consensus 384 P~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~ 463 (484)
|||++|+++||+.||+++++.+|+|+.+...+.+..++.++|+++|+++|.+++|+++|+||+++++.+++|+ .+|||+
T Consensus 357 P~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av-~~gGSS 435 (449)
T PLN02173 357 PMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSL-SEGGST 435 (449)
T ss_pred CEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHh-cCCCcH
Confidence 9999999999999999997677999998631111246999999999999998888899999999999999999 999999
Q ss_pred HHHHHHHHHHHh
Q 043859 464 YSSLARLAKECG 475 (484)
Q Consensus 464 ~~~~~~~~~~~~ 475 (484)
++++++|++++.
T Consensus 436 ~~~l~~~v~~~~ 447 (449)
T PLN02173 436 DININTFVSKIQ 447 (449)
T ss_pred HHHHHHHHHHhc
Confidence 999999999874
No 11
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-64 Score=499.63 Aligned_cols=438 Identities=34% Similarity=0.627 Sum_probs=329.9
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCC--CeEEEEe--cCCCchhHHHHHhhhcc-CCCceEEEecCCCCC-CCC
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYN--FQVTIFV--VASQTSAAESKILQSAM-SSKLCHVIEIPAPDI-SGL 78 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~G--h~Vt~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~-~~~ 78 (484)
|.+.||+++|+|++||++|++.||+.|+.+ | +.||++. ++.+...+.+ .++... ....+++..+|.... ++.
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~-g~~~~vti~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~lp~~~~~~~~ 78 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSK-NPSLSIHIILVPPPYQPESTAT-YISSVSSSFPSITFHHLPAVTPYSSS 78 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhC-CCceEEEEEEecCcchhhhhhh-hhccccCCCCCeEEEEcCCCCCCCCc
Confidence 456799999999999999999999999998 7 5566644 4332211111 111110 112499999985431 121
Q ss_pred CCCCchHHHHHHHHHHHhhHHHHHHHHhcC--CCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccc
Q 043859 79 VDPDAAVVTIISVIMREIKPAFRSAISALK--TTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDK 156 (484)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~ 156 (484)
..........+........+.+.++++++. ++++|||+|.+.+|+..+|+++|||.+.+++++++.++.+.+++....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~ 158 (451)
T PLN03004 79 STSRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE 158 (451)
T ss_pred cccccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc
Confidence 111112222344445566777788888762 345999999999999999999999999999999999888877664322
Q ss_pred cccCccccCCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCC
Q 043859 157 TVQGQYVVQNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRIT 236 (484)
Q Consensus 157 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~ 236 (484)
..+.........+.+||++.++..+++..+.......+..+.+....+.+++++++||+.+||..++.++.... .
T Consensus 159 ~~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~--~--- 233 (451)
T PLN03004 159 TTPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEEL--C--- 233 (451)
T ss_pred cccccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcC--C---
Confidence 11111001112356899988888898876654444445555666666777889999999999999999886530 0
Q ss_pred CCCeEEeccccCCCC-C-C--CCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCC
Q 043859 237 KVPIYTVGPIIRRLG-P-A--GSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNETT 312 (484)
Q Consensus 237 ~p~~~~vGpl~~~~~-~-~--~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 312 (484)
.++++.|||++.... . . ..+.+|.+||+.+++++||||||||+...+.+++++++.+|+.++.+|||+++.+....
T Consensus 234 ~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~ 313 (451)
T PLN03004 234 FRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELE 313 (451)
T ss_pred CCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccc
Confidence 246999999974311 1 1 12346899999998899999999999999999999999999999999999997532100
Q ss_pred CCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceeeccccc
Q 043859 313 GDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYS 392 (484)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~ 392 (484)
. ...+....+|++|.++++..|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++
T Consensus 314 ---------~--~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~ 382 (451)
T PLN03004 314 ---------K--TELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYA 382 (451)
T ss_pred ---------c--cccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccc
Confidence 0 00001124889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHH
Q 043859 393 EQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYS 465 (484)
Q Consensus 393 DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~ 465 (484)
||+.||+++++++|+|++++.. ....+++++|+++|+++|.|++ ||++|+++++.++.|+ ++||||++
T Consensus 383 DQ~~na~~~~~~~g~g~~l~~~-~~~~~~~e~l~~av~~vm~~~~---~r~~a~~~~~~a~~Av-~~GGSS~~ 450 (451)
T PLN03004 383 EQRFNRVMIVDEIKIAISMNES-ETGFVSSTEVEKRVQEIIGECP---VRERTMAMKNAAELAL-TETGSSHT 450 (451)
T ss_pred cchhhHHHHHHHhCceEEecCC-cCCccCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHh-cCCCCCCC
Confidence 9999999996578999998631 1125799999999999999876 9999999999999999 99999864
No 12
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.4e-63 Score=495.93 Aligned_cols=422 Identities=23% Similarity=0.346 Sum_probs=323.8
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCc--
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDA-- 83 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-- 83 (484)
.++||+++|+|++||++|++.||+.|+++ ||+|||++++.+..++.+.. ..+ ..+++..++....+++ +.+.
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~-G~~VT~vtt~~~~~~i~~~~--a~~--~~i~~~~l~~p~~dgL-p~g~~~ 76 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEK-GHRVTFLLPKKAQKQLEHHN--LFP--DSIVFHPLTIPPVNGL-PAGAET 76 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhC-CCEEEEEeccchhhhhhccc--CCC--CceEEEEeCCCCccCC-CCCccc
Confidence 46799999999999999999999999999 99999999987655433221 111 2366666654222222 3321
Q ss_pred ------hHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhcccccc
Q 043859 84 ------AVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKT 157 (484)
Q Consensus 84 ------~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~ 157 (484)
.....+........+.++++++++ ++||||+| +..|+..+|+++|||++.+++++++.+. +.+.+. ..
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~--~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--~~ 150 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRAL--RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--GK 150 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc--cc
Confidence 112223444566777888888888 99999999 6789999999999999999999987654 443332 00
Q ss_pred ccCccccCCccccCCCCCC----CCcCCCCCccccCCchhHHHHHHhh-hcccCccEEEEcChhhhcHHHHHHHhhcccc
Q 043859 158 VQGQYVVQNESFNIPGCRP----LRPEDVVDPMLDRTNQQYFEYVHIG-EEIPLSDGILVNTWEDLQPTALTALRDDKSL 232 (484)
Q Consensus 158 ~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 232 (484)
. ...+|+++. ++..+++.. ......+..+.+.. +...+++++++||+.+||+.++.++...
T Consensus 151 ~---------~~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~--- 216 (442)
T PLN02208 151 L---------GVPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQ--- 216 (442)
T ss_pred c---------CCCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhh---
Confidence 0 012456553 345555532 12223344444333 3566788999999999999998887643
Q ss_pred CCCCCCCeEEeccccCCCC-CCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCC
Q 043859 233 GRITKVPIYTVGPIIRRLG-PAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNET 311 (484)
Q Consensus 233 ~rp~~p~~~~vGpl~~~~~-~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 311 (484)
..|+++.|||++.... ..+.++++.+||+.+++++||||||||+..++.+++.+++.+++..+.+++|+++.+.+
T Consensus 217 ---~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~- 292 (442)
T PLN02208 217 ---YHKKVLLTGPMFPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRG- 292 (442)
T ss_pred ---cCCCEEEEeecccCcCCCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCc-
Confidence 2367999999986432 12356789999999988899999999999889999999999998899999999975321
Q ss_pred CCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceeecccc
Q 043859 312 TGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLY 391 (484)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~ 391 (484)
.......+|++|.++++..|+++.+|+||.+||+|++|++|||||||||++||+++|||||++|++
T Consensus 293 --------------~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~ 358 (442)
T PLN02208 293 --------------SSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFL 358 (442)
T ss_pred --------------ccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcc
Confidence 000124689999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHhhhcCCCChHHHHHH
Q 043859 392 SEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDE--EGYEIRAKVKELQRSAQKAWTRESGSSYSSLAR 469 (484)
Q Consensus 392 ~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~--~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~ 469 (484)
+||+.||+++++.+|+|+.++.. .++.++.++|+++|+++|.++ .|+++|++|+++++.+. + +||+++++++
T Consensus 359 ~DQ~~na~~~~~~~g~gv~~~~~-~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~-~gsS~~~l~~ 432 (442)
T PLN02208 359 SDQVLFTRLMTEEFEVSVEVSRE-KTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----S-PGLLTGYVDK 432 (442)
T ss_pred hhhHHHHHHHHHHhceeEEeccc-cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----c-CCcHHHHHHH
Confidence 99999999886669999998631 012389999999999999874 48899999999999963 4 6899999999
Q ss_pred HHHHHhhh
Q 043859 470 LAKECGMM 477 (484)
Q Consensus 470 ~~~~~~~~ 477 (484)
|++++.++
T Consensus 433 ~v~~l~~~ 440 (442)
T PLN02208 433 FVEELQEY 440 (442)
T ss_pred HHHHHHHh
Confidence 99998764
No 13
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2e-63 Score=495.93 Aligned_cols=441 Identities=27% Similarity=0.422 Sum_probs=334.5
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCc-
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDA- 83 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~- 83 (484)
..+.||+++|+|++||++|++.||+.|+.| |+.|||++++.+..++.+. ..... ..+++..+|.+..+++ +.+.
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~~~~-~~~~~--~~i~~~~lp~p~~dgl-p~~~~ 78 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQK-GHKISFISTPRNLHRLPKI-PSQLS--SSITLVSFPLPSVPGL-PSSAE 78 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhC-CCEEEEEeCCchHHhhhhc-cccCC--CCeeEEECCCCccCCC-CCCcc
Confidence 345799999999999999999999999999 9999999999765443321 11111 2488999986544333 4221
Q ss_pred ---hH----HHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccc
Q 043859 84 ---AV----VTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDK 156 (484)
Q Consensus 84 ---~~----~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~ 156 (484)
+. ...+....+.+.+.+++++++. +++|||+|.+..|+..+|+++|||++.+++++++.++.+.+.+....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 79 SSTDVPYTKQQLLKKAFDLLEPPLTTFLETS--KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred cccccchhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 11 1233445556677788888877 89999999999999999999999999999999988777654322211
Q ss_pred cccCccccCCccc-cCCCCCC------CCcCCCCCccccC--CchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHh
Q 043859 157 TVQGQYVVQNESF-NIPGCRP------LRPEDVVDPMLDR--TNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALR 227 (484)
Q Consensus 157 ~~~~~~~~~~~~~-~~p~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 227 (484)
.. ......+.+ .+|++.+ ++..+++..+... ....+..+.+....+.+++++++|||.+||..++.+++
T Consensus 157 ~~--~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~ 234 (472)
T PLN02670 157 GG--DLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLS 234 (472)
T ss_pred cc--cCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHH
Confidence 11 110111111 2444322 3344655444211 11234445555556677889999999999999999987
Q ss_pred hccccCCCCC-CCeEEeccccCC--C-CCCC-----CccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCC
Q 043859 228 DDKSLGRITK-VPIYTVGPIIRR--L-GPAG-----SWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQ 298 (484)
Q Consensus 228 ~~~~~~rp~~-p~~~~vGpl~~~--~-~~~~-----~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~ 298 (484)
+. . ++++.|||+... . .... .++++.+||+.+++++||||||||+..++.+++.+++.+|+.++
T Consensus 235 ~~-------~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~ 307 (472)
T PLN02670 235 DL-------YRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSE 307 (472)
T ss_pred Hh-------hCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCC
Confidence 64 3 469999999742 1 1111 12568999999988999999999999999999999999999999
Q ss_pred CcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHH
Q 043859 299 QRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLES 378 (484)
Q Consensus 299 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~ea 378 (484)
.+|||+++..... ..+....+|++|.++++..++++.+|+||.+||+|+++++|||||||||++|+
T Consensus 308 ~~FlWv~r~~~~~--------------~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Ea 373 (472)
T PLN02670 308 TPFFWVLRNEPGT--------------TQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEG 373 (472)
T ss_pred CCEEEEEcCCccc--------------ccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHH
Confidence 9999999753210 11112468999999999889999999999999999999999999999999999
Q ss_pred HhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhc
Q 043859 379 ITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTR 458 (484)
Q Consensus 379 l~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~ 458 (484)
+++|||||++|+++||+.||+++ +++|+|+.+...+.+..++.++|+++|+++|.+++|+.||+||+++++.++
T Consensus 374 i~~GVP~l~~P~~~DQ~~Na~~v-~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~----- 447 (472)
T PLN02670 374 LGFGRVLILFPVLNEQGLNTRLL-HGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFG----- 447 (472)
T ss_pred HHcCCCEEeCcchhccHHHHHHH-HHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh-----
Confidence 99999999999999999999999 589999998632211358999999999999998878889999999999964
Q ss_pred CCCChHHHHHHHHHHHhhhhhcC
Q 043859 459 ESGSSYSSLARLAKECGMMTKRN 481 (484)
Q Consensus 459 ~~g~~~~~~~~~~~~~~~~~~~~ 481 (484)
..+.....+++|++.+..+..++
T Consensus 448 ~~~~~~~~~~~~~~~l~~~~~~~ 470 (472)
T PLN02670 448 DMDRNNRYVDELVHYLRENRSSR 470 (472)
T ss_pred CcchhHHHHHHHHHHHHHhcccc
Confidence 45667789999999998887443
No 14
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=4.8e-63 Score=494.98 Aligned_cols=427 Identities=22% Similarity=0.360 Sum_probs=327.7
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchH
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAV 85 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 85 (484)
.+.||+++|+|++||++|++.||+.|+.+ |+.|||++++.+..++.+.. ... ..+++..+|... ++..+ .+.
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~~~~~~-~~~---~~i~~v~lp~g~-~~~~~--~~~ 76 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSR-GFEPVVITPEFIHRRISATL-DPK---LGITFMSISDGQ-DDDPP--RDF 76 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhC-CCEEEEEeCcchhhhhhhcc-CCC---CCEEEEECCCCC-CCCcc--ccH
Confidence 35699999999999999999999999999 99999999998665433221 111 248999988532 22101 122
Q ss_pred HHHHHHHHH-HhhHHHHHHHHhcC--CCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccc--cC
Q 043859 86 VTIISVIMR-EIKPAFRSAISALK--TTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTV--QG 160 (484)
Q Consensus 86 ~~~~~~~~~-~~~~~l~~~l~~~~--~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~--~~ 160 (484)
. .+..... .+.+.++++++++. .+++|||+|.+..|+..+|+++|||++.+++++++.+..+.+.+...... ..
T Consensus 77 ~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (448)
T PLN02562 77 F-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISE 155 (448)
T ss_pred H-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccc
Confidence 2 2222333 46777888888762 23589999999999999999999999999999988877766655322110 00
Q ss_pred -ccccCCcc-ccCCCCCCCCcCCCCCccccC--CchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCC
Q 043859 161 -QYVVQNES-FNIPGCRPLRPEDVVDPMLDR--TNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRIT 236 (484)
Q Consensus 161 -~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~ 236 (484)
......+. ..+|+++.++..+++..+... ....+..+.+..+...+++++++|||.+||+..+..+... .+||.
T Consensus 156 ~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--~~~~~ 233 (448)
T PLN02562 156 TGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQAS--YNNGQ 233 (448)
T ss_pred ccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhh--hcccc
Confidence 00011112 257888878888888755322 2334566666677778888999999999999888876542 12444
Q ss_pred CCCeEEeccccCCCC-----CC--CCccccccccCCCCCCeEEEEecCCCC-CCCHHHHHHHHHHHhhCCCcEEEEEeCC
Q 043859 237 KVPIYTVGPIIRRLG-----PA--GSWNELFDWLDKQPSESVLYVSFGSGG-TLTYEQITELAWGLELSQQRFIWVVRLP 308 (484)
Q Consensus 237 ~p~~~~vGpl~~~~~-----~~--~~~~~~~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~ 308 (484)
.|+++.|||++.... +. +.+.+|.+||+.++++++|||||||+. ..+.+++.+++.+|+.++.+|||+++..
T Consensus 234 ~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~ 313 (448)
T PLN02562 234 NPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV 313 (448)
T ss_pred CCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 577999999976421 11 123457799999988899999999985 6788999999999999999999998532
Q ss_pred CCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceeec
Q 043859 309 NETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVW 388 (484)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~ 388 (484)
. ...+|++|.++.+. |+.+.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 314 ~--------------------~~~l~~~~~~~~~~-~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~ 372 (448)
T PLN02562 314 W--------------------REGLPPGYVERVSK-QGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCY 372 (448)
T ss_pred c--------------------hhhCCHHHHHHhcc-CEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeC
Confidence 1 13577888887765 55666999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHH
Q 043859 389 PLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLA 468 (484)
Q Consensus 389 P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~ 468 (484)
|+++||+.||+++++.+|+|+.+. .++.++|.++|+++|.|++ ||+||++++++++++ .+||||+++++
T Consensus 373 P~~~DQ~~na~~~~~~~g~g~~~~------~~~~~~l~~~v~~~l~~~~---~r~~a~~l~~~~~~~--~~gGSS~~nl~ 441 (448)
T PLN02562 373 PVAGDQFVNCAYIVDVWKIGVRIS------GFGQKEVEEGLRKVMEDSG---MGERLMKLRERAMGE--EARLRSMMNFT 441 (448)
T ss_pred CcccchHHHHHHHHHHhCceeEeC------CCCHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhc--CCCCCHHHHHH
Confidence 999999999999965589998873 5799999999999998876 999999999987743 34689999999
Q ss_pred HHHHHHh
Q 043859 469 RLAKECG 475 (484)
Q Consensus 469 ~~~~~~~ 475 (484)
+|+++++
T Consensus 442 ~~v~~~~ 448 (448)
T PLN02562 442 TLKDELK 448 (448)
T ss_pred HHHHHhC
Confidence 9999863
No 15
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=8.7e-63 Score=499.36 Aligned_cols=442 Identities=27% Similarity=0.438 Sum_probs=323.7
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhcc--CC--CceEEEecCCC--CCCCCC
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAM--SS--KLCHVIEIPAP--DISGLV 79 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~p~~--~~~~~~ 79 (484)
+++||+++|+|++||++|++.||+.|++| ||+|||++++.+...+.+.+..+.+ .+ ..+....+|.. .+++..
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~r-G~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~ 82 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSR-GAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGC 82 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhC-CCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCc
Confidence 45799999999999999999999999999 9999999999887665554432211 01 12344444421 111110
Q ss_pred CCCc-----------hHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHH
Q 043859 80 DPDA-----------AVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALF 148 (484)
Q Consensus 80 ~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~ 148 (484)
.... +....+........+.++++++.. +|||||+|.++.|+..+|+++|||++.+++++++....+
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~ 160 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETT--RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCAS 160 (482)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC--CCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHH
Confidence 0000 111122223334455556666555 899999999999999999999999999999998776655
Q ss_pred HhhccccccccCccccCCccccCCCCC---CCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHH
Q 043859 149 VYAPTLDKTVQGQYVVQNESFNIPGCR---PLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTA 225 (484)
Q Consensus 149 ~~~p~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 225 (484)
.......... ........+.+|+++ .++..+++.. ..................+.+++++|++.+||...+.+
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~ 236 (482)
T PLN03007 161 YCIRVHKPQK--KVASSSEPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADF 236 (482)
T ss_pred HHHHhccccc--ccCCCCceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHH
Confidence 4332111000 000001123366664 2333333321 11111222333344456778899999999999998888
Q ss_pred HhhccccCCCCC-CCeEEeccccCCCC--------CC---CCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHH
Q 043859 226 LRDDKSLGRITK-VPIYTVGPIIRRLG--------PA---GSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWG 293 (484)
Q Consensus 226 ~~~~~~~~rp~~-p~~~~vGpl~~~~~--------~~---~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a 293 (484)
+.+. . +++++|||+..... .. ..++++.+||+.++++++|||||||+...+.+++.+++.+
T Consensus 237 ~~~~-------~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~ 309 (482)
T PLN03007 237 YKSF-------VAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAG 309 (482)
T ss_pred HHhc-------cCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHH
Confidence 7654 3 35999999764211 10 1246789999999889999999999988888999999999
Q ss_pred HhhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCch
Q 043859 294 LELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWN 373 (484)
Q Consensus 294 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~g 373 (484)
|+.++.+|||+++.+... ++ ....+|++|.++....|+++.+|+||.+||+|+++++||||||||
T Consensus 310 l~~~~~~flw~~~~~~~~--------------~~-~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~n 374 (482)
T PLN03007 310 LEGSGQNFIWVVRKNENQ--------------GE-KEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWN 374 (482)
T ss_pred HHHCCCCEEEEEecCCcc--------------cc-hhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcch
Confidence 999999999999754210 00 124688999999988899999999999999999999999999999
Q ss_pred hHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecC----CCCccCHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 043859 374 STLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLP----SKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQ 449 (484)
Q Consensus 374 s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~----~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~ 449 (484)
|++||+++|||||++|+++||+.||+++++.+++|+.+.... ....+++++|+++|+++|.+++|+.||+||++++
T Consensus 375 S~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~ 454 (482)
T PLN03007 375 SLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLA 454 (482)
T ss_pred HHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999866667776653100 1146899999999999999987888999999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHhhh
Q 043859 450 RSAQKAWTRESGSSYSSLARLAKECGMM 477 (484)
Q Consensus 450 ~~~~~a~~~~~g~~~~~~~~~~~~~~~~ 477 (484)
+.+++|+ .+|||+++++++|++.+.++
T Consensus 455 ~~a~~a~-~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 455 EMAKAAV-EEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred HHHHHHH-hCCCcHHHHHHHHHHHHHhc
Confidence 9999999 99999999999999998754
No 16
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.5e-63 Score=499.12 Aligned_cols=448 Identities=32% Similarity=0.566 Sum_probs=333.8
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCC--CeEEEEecCCCchhHH--HHHhhhccC--CCceEEEecCCCCCCCCCC
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYN--FQVTIFVVASQTSAAE--SKILQSAMS--SKLCHVIEIPAPDISGLVD 80 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~G--h~Vt~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~p~~~~~~~~~ 80 (484)
|+|||++|+|++||++|++.||+.|+.+ | ..|||++++.+..++. +..+..... ...++++.+|...... +
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~-G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~--~ 78 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDS-DDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPT--T 78 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhC-CCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCc--c
Confidence 7899999999999999999999999999 7 8899999987643211 111221110 1249999998643211 1
Q ss_pred CCchHHHHHHHHHHHhhHHHHHHHHhc----C---CCC-eEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhc
Q 043859 81 PDAAVVTIISVIMREIKPAFRSAISAL----K---TTP-TALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAP 152 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~~----~---~~p-D~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p 152 (484)
... .+...+..+.+.+++.++++ . .+| +|||+|.+..|+..+|+++|||++.+++++++.++.+.+.+
T Consensus 79 ~~~----~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~ 154 (481)
T PLN02554 79 EDP----TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQ 154 (481)
T ss_pred cch----HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhh
Confidence 111 23333344444454554443 1 133 89999999999999999999999999999999999888776
Q ss_pred ccccc--cc-CccccCCccccCCCCC-CCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhh
Q 043859 153 TLDKT--VQ-GQYVVQNESFNIPGCR-PLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRD 228 (484)
Q Consensus 153 ~~~~~--~~-~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 228 (484)
..... .. ....+....+.+|+++ +++..+++..+... ..+..+.+....+.+++++++|++.+||..++..+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~ 232 (481)
T PLN02554 155 MLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK--EWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSG 232 (481)
T ss_pred hhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH--HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 54322 11 0111111335688974 77778887654322 3355566666777889999999999999999888875
Q ss_pred ccccCCCCCCCeEEeccccC-CCC-C---CCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEE
Q 043859 229 DKSLGRITKVPIYTVGPIIR-RLG-P---AGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIW 303 (484)
Q Consensus 229 ~~~~~rp~~p~~~~vGpl~~-~~~-~---~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 303 (484)
.. +..|+++.|||++. ... . .+.++++.+||+.+++++||||||||+...+.+++.+++.+|+.++++|||
T Consensus 233 ~~----~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW 308 (481)
T PLN02554 233 SS----GDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLW 308 (481)
T ss_pred cc----cCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 21 11577999999943 211 1 124468999999998889999999999888999999999999999999999
Q ss_pred EEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCC
Q 043859 304 VVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGV 383 (484)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~Gv 383 (484)
+++.+.... ...+.+ +..+....+|++|.++.+.++ .+.+|+||.+||+|+++++|||||||||++||+++||
T Consensus 309 ~~~~~~~~~-----~~~~~~-~~~~~~~~lp~~~~~r~~~~g-~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GV 381 (481)
T PLN02554 309 SLRRASPNI-----MKEPPG-EFTNLEEILPEGFLDRTKDIG-KVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGV 381 (481)
T ss_pred EEcCCcccc-----cccccc-cccchhhhCChHHHHHhccCc-eEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCC
Confidence 997532100 000000 000111346889998887655 4459999999999999999999999999999999999
Q ss_pred ceeecccccccchhHHHHHhhhcceEEeeec-------CCCCccCHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHh
Q 043859 384 PMIVWPLYSEQRMNATILTEELGVAIRSKVL-------PSKGVVGREEIKTMVRRILV-DEEGYEIRAKVKELQRSAQKA 455 (484)
Q Consensus 384 P~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~-------~~~~~~~~~~l~~~i~~vl~-~~~~~~~~~~a~~l~~~~~~a 455 (484)
|||++|+++||+.||+++++++|+|+.++.. +....+++++|+++|+++|. |++ ||+||+++++.+++|
T Consensus 382 P~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~---~r~~a~~l~~~~~~a 458 (481)
T PLN02554 382 PMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSD---VRKRVKEMSEKCHVA 458 (481)
T ss_pred CEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHH
Confidence 9999999999999996644899999998520 01136899999999999997 544 999999999999999
Q ss_pred hhcCCCChHHHHHHHHHHHhhhh
Q 043859 456 WTRESGSSYSSLARLAKECGMMT 478 (484)
Q Consensus 456 ~~~~~g~~~~~~~~~~~~~~~~~ 478 (484)
+ ++|||++.++++|++++.++.
T Consensus 459 v-~~gGss~~~l~~lv~~~~~~~ 480 (481)
T PLN02554 459 L-MDGGSSHTALKKFIQDVTKNI 480 (481)
T ss_pred h-cCCChHHHHHHHHHHHHHhhC
Confidence 9 999999999999999998764
No 17
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.8e-62 Score=487.71 Aligned_cols=434 Identities=26% Similarity=0.429 Sum_probs=328.0
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHh-cCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCC-C
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVT-LYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDP-D 82 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~-r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~ 82 (484)
|++.||+++|+|++||++|++.||+.|+. + |+.|||++++.+.. +..+........++|.+++. .+++.... .
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~-G~~vT~v~t~~~~~---~~~~~~~~~~~~i~~~~i~d-glp~g~~~~~ 75 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTT-GTRVTFATCLSVIH---RSMIPNHNNVENLSFLTFSD-GFDDGVISNT 75 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCC-CcEEEEEeccchhh---hhhhccCCCCCCEEEEEcCC-CCCCcccccc
Confidence 45779999999999999999999999995 7 99999999995321 22222211112488998873 22221001 1
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHhcC---CCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhcccccccc
Q 043859 83 AAVVTIISVIMREIKPAFRSAISALK---TTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQ 159 (484)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~l~~~~---~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~ 159 (484)
.+....+......+.+.+.++++++. .+++|||+|.+.+|+..+|+++|||++.+++++++.++.+.+++...
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~---- 151 (455)
T PLN02152 76 DDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN---- 151 (455)
T ss_pred ccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC----
Confidence 12333455566667788888888752 34599999999999999999999999999999999888876654211
Q ss_pred CccccCCccccCCCCCCCCcCCCCCccccC--CchhHHHHHHhhhcccC--ccEEEEcChhhhcHHHHHHHhhccccCCC
Q 043859 160 GQYVVQNESFNIPGCRPLRPEDVVDPMLDR--TNQQYFEYVHIGEEIPL--SDGILVNTWEDLQPTALTALRDDKSLGRI 235 (484)
Q Consensus 160 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~l~~~~~~l~~~~~~~~~~~~~~~rp 235 (484)
...+.+||++.++..+++..+... .......+.+..+.... ++++++|||.+||+.++.++++
T Consensus 152 ------~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~------- 218 (455)
T PLN02152 152 ------NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN------- 218 (455)
T ss_pred ------CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc-------
Confidence 123458888888888888765422 22223444444444322 4689999999999999888743
Q ss_pred CCCCeEEeccccCCC---CC---C-----CCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEE
Q 043859 236 TKVPIYTVGPIIRRL---GP---A-----GSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWV 304 (484)
Q Consensus 236 ~~p~~~~vGpl~~~~---~~---~-----~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 304 (484)
.+++.|||++... .. . +.+.++.+||+.+++++||||||||+..++.+++.+++.+|+.++.+|||+
T Consensus 219 --~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv 296 (455)
T PLN02152 219 --IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWV 296 (455)
T ss_pred --CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEE
Confidence 2599999997421 10 0 123479999999988899999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCc
Q 043859 305 VRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVP 384 (484)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP 384 (484)
++.+.... . .. ++ .+.....+|++|.++.+..+ .+.+|+||.+||+|++|++|||||||||++|++++|||
T Consensus 297 ~r~~~~~~--~--~~--~~--~~~~~~~~~~~f~e~~~~~g-~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP 367 (455)
T PLN02152 297 ITDKLNRE--A--KI--EG--EEETEIEKIAGFRHELEEVG-MIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVP 367 (455)
T ss_pred EecCcccc--c--cc--cc--ccccccccchhHHHhccCCe-EEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCC
Confidence 97532100 0 00 00 00001134678888876655 55599999999999999999999999999999999999
Q ss_pred eeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChH
Q 043859 385 MIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSY 464 (484)
Q Consensus 385 ~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~ 464 (484)
||++|+++||+.||+++++.+|+|+.+.. ++++.++.++|+++|+++|+|+ ++.||+||++|++.+++|+ .+|||++
T Consensus 368 ~l~~P~~~DQ~~na~~~~~~~~~G~~~~~-~~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~-~~ggsS~ 444 (455)
T PLN02152 368 VVAFPMWSDQPANAKLLEEIWKTGVRVRE-NSEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAG-GEGGSSD 444 (455)
T ss_pred EEeccccccchHHHHHHHHHhCceEEeec-CcCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHH-cCCCcHH
Confidence 99999999999999999766788877752 2223569999999999999854 4569999999999999999 9999999
Q ss_pred HHHHHHHHHH
Q 043859 465 SSLARLAKEC 474 (484)
Q Consensus 465 ~~~~~~~~~~ 474 (484)
+++++|++++
T Consensus 445 ~nl~~li~~i 454 (455)
T PLN02152 445 KNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHh
Confidence 9999999976
No 18
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.1e-62 Score=494.23 Aligned_cols=434 Identities=29% Similarity=0.439 Sum_probs=334.1
Q ss_pred CCCCCCeEEEEcCCCccChHHHHHHHHHHHhcC-CCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCC
Q 043859 3 SSSSKPHAVLLASPGVGHVIPVLELGKRLVTLY-NFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDP 81 (484)
Q Consensus 3 ~~~~~~~il~~~~p~~GHv~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (484)
+++.+.||+++|+|++||++|++.||++|++++ ||+|||++++.+..++.+.. . ..+++|..+|....++. ..
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~--~---~~gi~fv~lp~~~p~~~-~~ 79 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP--K---PDNIRFATIPNVIPSEL-VR 79 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC--C---CCCEEEEECCCCCCCcc-cc
Confidence 457789999999999999999999999999863 79999999998765543321 1 12489999885211111 21
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccc--c
Q 043859 82 DAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTV--Q 159 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~--~ 159 (484)
..+....+..+.+.+.+.++++++++..++||||+|.+.+|+..+|+++|||+|.+++++++.++.+.+.+...... +
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~ 159 (459)
T PLN02448 80 AADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFP 159 (459)
T ss_pred ccCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCC
Confidence 22233333444445677788888876446899999999999999999999999999999998777776654332111 1
Q ss_pred Ccccc-CCccc-cCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCC
Q 043859 160 GQYVV-QNESF-NIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITK 237 (484)
Q Consensus 160 ~~~~~-~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~ 237 (484)
..... ....+ .+|+++.++..+++..+.......++.+........+++++++||+.+||+.++.++++. .
T Consensus 160 ~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~-------~ 232 (459)
T PLN02448 160 VELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSK-------F 232 (459)
T ss_pred CccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhh-------c
Confidence 11000 01112 378887777778876554433444566666666677788999999999999999888764 3
Q ss_pred C-CeEEeccccCCCC----C----C-CCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeC
Q 043859 238 V-PIYTVGPIIRRLG----P----A-GSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRL 307 (484)
Q Consensus 238 p-~~~~vGpl~~~~~----~----~-~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 307 (484)
+ +++.|||+..... . . +.+.++.+|++.++++++|||||||+...+.+++++++.+|+.++.+|||+++.
T Consensus 233 ~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~ 312 (459)
T PLN02448 233 PFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARG 312 (459)
T ss_pred CCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 3 5999999975310 0 0 112378899999988899999999998888899999999999999999998743
Q ss_pred CCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceee
Q 043859 308 PNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIV 387 (484)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~ 387 (484)
.. .++.+..+ .|.++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 313 ~~-------------------------~~~~~~~~-~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~ 366 (459)
T PLN02448 313 EA-------------------------SRLKEICG-DMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLT 366 (459)
T ss_pred ch-------------------------hhHhHhcc-CCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEe
Confidence 21 13333333 25666799999999999999999999999999999999999999
Q ss_pred cccccccchhHHHHHhhhcceEEeeec-CCCCccCHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHhhhcCCCChH
Q 043859 388 WPLYSEQRMNATILTEELGVAIRSKVL-PSKGVVGREEIKTMVRRILVD--EEGYEIRAKVKELQRSAQKAWTRESGSSY 464 (484)
Q Consensus 388 ~P~~~DQ~~na~rv~~~~G~g~~l~~~-~~~~~~~~~~l~~~i~~vl~~--~~~~~~~~~a~~l~~~~~~a~~~~~g~~~ 464 (484)
+|+++||+.||+++++.+|+|+.+... +.+..+++++|+++|+++|.+ ++|+.||+||++|++.+++|+ .+|||++
T Consensus 367 ~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~-~~gGss~ 445 (459)
T PLN02448 367 FPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAI-AKGGSSD 445 (459)
T ss_pred ccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-cCCCcHH
Confidence 999999999999996568999988531 111357999999999999986 357889999999999999999 9999999
Q ss_pred HHHHHHHHHHhh
Q 043859 465 SSLARLAKECGM 476 (484)
Q Consensus 465 ~~~~~~~~~~~~ 476 (484)
+++++|++++.+
T Consensus 446 ~~l~~~v~~~~~ 457 (459)
T PLN02448 446 TNLDAFIRDISQ 457 (459)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 19
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=3.2e-62 Score=486.79 Aligned_cols=421 Identities=24% Similarity=0.349 Sum_probs=318.1
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCch
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAA 84 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 84 (484)
.++.||+++|+|++||++|++.||+.|+++ |++|||++++.+..++.... ... ..++|..++.+..+++ +.+.+
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~i~~~~--~~~--~~i~~~~i~lP~~dGL-P~g~e 75 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKLAEK-GHRVTFFLPKKAHKQLQPLN--LFP--DSIVFEPLTLPPVDGL-PFGAE 75 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCchhhhhcccc--cCC--CceEEEEecCCCcCCC-CCccc
Confidence 457899999999999999999999999999 99999999997654432221 111 2377766653322332 33211
Q ss_pred ----H----HHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccc
Q 043859 85 ----V----VTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDK 156 (484)
Q Consensus 85 ----~----~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~ 156 (484)
. ...+........+.++++++.. +|||||+| +.+|+..+|+++|||++.+++++++.++.+.+ +. .
T Consensus 76 ~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~~--~p~cVV~D-~~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~--~ 149 (446)
T PLN00414 76 TASDLPNSTKKPIFDAMDLLRDQIEAKVRAL--KPDLIFFD-FVHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PR--A 149 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEEC-CchhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cH--h
Confidence 1 2223444445666677777666 89999999 48899999999999999999999988877654 21 1
Q ss_pred cccCccccCCccccCCCCCC----CCcCCC--CCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhcc
Q 043859 157 TVQGQYVVQNESFNIPGCRP----LRPEDV--VDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDK 230 (484)
Q Consensus 157 ~~~~~~~~~~~~~~~p~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 230 (484)
.. . ..+|+++. ++..+. +..+ .. ....+.+..+...+++++++|||.+||+.++.++.+.
T Consensus 150 ~~-------~--~~~pg~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~- 215 (446)
T PLN00414 150 EL-------G--FPPPDYPLSKVALRGHDANVCSLF-AN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQ- 215 (446)
T ss_pred hc-------C--CCCCCCCCCcCcCchhhcccchhh-cc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHh-
Confidence 00 0 11344432 221211 1111 11 1233444445567788999999999999999888763
Q ss_pred ccCCCCC-CCeEEeccccCCCCC---CCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEe
Q 043859 231 SLGRITK-VPIYTVGPIIRRLGP---AGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVR 306 (484)
Q Consensus 231 ~~~rp~~-p~~~~vGpl~~~~~~---~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 306 (484)
+ ++++.|||+...... ....++|.+||+.+++++||||||||+...+.+++.+++.+|+.++.+|+|++.
T Consensus 216 ------~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr 289 (446)
T PLN00414 216 ------CQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVM 289 (446)
T ss_pred ------cCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3 359999999753211 112356899999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCcee
Q 043859 307 LPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMI 386 (484)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v 386 (484)
.+.. .++....+|++|.++++..++++.+|+||.+||+|+++++|||||||||++|++++|||||
T Consensus 290 ~~~~---------------~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l 354 (446)
T PLN00414 290 PPKG---------------SSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIV 354 (446)
T ss_pred cCCC---------------cccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEE
Confidence 5421 1012356899999999999999989999999999999999999999999999999999999
Q ss_pred ecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHhhhcCCCChH
Q 043859 387 VWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDE--EGYEIRAKVKELQRSAQKAWTRESGSSY 464 (484)
Q Consensus 387 ~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~--~~~~~~~~a~~l~~~~~~a~~~~~g~~~ 464 (484)
++|++.||+.||+++++++|+|+.+...+ ...++.++|+++++++|.++ .|+++|++|+++++.+. ++||++
T Consensus 355 ~~P~~~dQ~~na~~~~~~~g~g~~~~~~~-~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~----~~gg~s- 428 (446)
T PLN00414 355 FIPQLADQVLITRLLTEELEVSVKVQRED-SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV----SPGLLS- 428 (446)
T ss_pred ecCcccchHHHHHHHHHHhCeEEEecccc-CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH----cCCCcH-
Confidence 99999999999999976899999986311 12489999999999999873 47889999999999963 777734
Q ss_pred HHHHHHHHHHhhhh
Q 043859 465 SSLARLAKECGMMT 478 (484)
Q Consensus 465 ~~~~~~~~~~~~~~ 478 (484)
..+++|+++++...
T Consensus 429 s~l~~~v~~~~~~~ 442 (446)
T PLN00414 429 GYADKFVEALENEV 442 (446)
T ss_pred HHHHHHHHHHHHhc
Confidence 33899999986554
No 20
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=5.6e-62 Score=481.69 Aligned_cols=427 Identities=22% Similarity=0.342 Sum_probs=325.9
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCc--
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDA-- 83 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-- 83 (484)
.++||+++|+|++||++|++.||+.|+.+ |+.|||++++.+..++.+ +...+....+.+..+|.. +++ +.+.
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~-g~~vT~~tt~~~~~~~~~--~~~~~~~~~v~~~~~p~~--~gl-p~g~e~ 77 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEK-GHTVTFLLPKKALKQLEH--LNLFPHNIVFRSVTVPHV--DGL-PVGTET 77 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhC-CCEEEEEeCcchhhhhcc--cccCCCCceEEEEECCCc--CCC-CCcccc
Confidence 46899999999999999999999999999 999999999986543322 111110112666667632 222 3321
Q ss_pred ------hHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhcccccc
Q 043859 84 ------AVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKT 157 (484)
Q Consensus 84 ------~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~ 157 (484)
.....+........+.+.+++++. +|||||+| +..|+..+|+++|||++.+++++++.++.+.. +. ..
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~--~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~--~~ 151 (453)
T PLN02764 78 VSEIPVTSADLLMSAMDLTRDQVEVVVRAV--EPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG--GE 151 (453)
T ss_pred cccCChhHHHHHHHHHHHhHHHHHHHHHhC--CCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc--cc
Confidence 111223444445667788888887 89999999 58899999999999999999999988777652 11 00
Q ss_pred ccCccccCCccccCCCCCC----CCcCCCCCccc-cCCc--hhHHHHHHhh-hcccCccEEEEcChhhhcHHHHHHHhhc
Q 043859 158 VQGQYVVQNESFNIPGCRP----LRPEDVVDPML-DRTN--QQYFEYVHIG-EEIPLSDGILVNTWEDLQPTALTALRDD 229 (484)
Q Consensus 158 ~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~-~~~~--~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 229 (484)
. ....||++. ++..+++.... .... .....+.... .....++++++||+.+||+.++.++++.
T Consensus 152 ~---------~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~ 222 (453)
T PLN02764 152 L---------GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKH 222 (453)
T ss_pred C---------CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhh
Confidence 0 011355542 44454443211 1111 1122222322 5567788999999999999999998663
Q ss_pred cccCCCCC-CCeEEeccccCCCC-CCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeC
Q 043859 230 KSLGRITK-VPIYTVGPIIRRLG-PAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRL 307 (484)
Q Consensus 230 ~~~~rp~~-p~~~~vGpl~~~~~-~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 307 (484)
. ++++.|||++.... ....+++|.+||+.+++++||||||||+...+.+++.+++.+|+.++.+|+|+++.
T Consensus 223 -------~~~~v~~VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~ 295 (453)
T PLN02764 223 -------CRKKVLLTGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKP 295 (453)
T ss_pred -------cCCcEEEeccCccCccccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 3 46999999975321 11234679999999999999999999998899999999999999999999999975
Q ss_pred CCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceee
Q 043859 308 PNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIV 387 (484)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~ 387 (484)
+.. .++....+|++|.++++..++++.+|+||.+||+|+++++|||||||||++|++++|||||+
T Consensus 296 ~~~---------------~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~ 360 (453)
T PLN02764 296 PRG---------------SSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVL 360 (453)
T ss_pred CCC---------------CcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEe
Confidence 321 11123569999999999899999999999999999999999999999999999999999999
Q ss_pred cccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHhhhcCCCChHH
Q 043859 388 WPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVD--EEGYEIRAKVKELQRSAQKAWTRESGSSYS 465 (484)
Q Consensus 388 ~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~--~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~ 465 (484)
+|++.||+.||+++++.+|+|+.+...+ ...++.++|+++|+++|.+ +.|+.+|++++++++.+ +++||+++
T Consensus 361 ~P~~~DQ~~na~~l~~~~g~gv~~~~~~-~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~-----~~~GSS~~ 434 (453)
T PLN02764 361 VPQLGDQVLNTRLLSDELKVSVEVAREE-TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETL-----ASPGLLTG 434 (453)
T ss_pred CCcccchHHHHHHHHHHhceEEEecccc-CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH-----HhcCCHHH
Confidence 9999999999999966799999875310 0258999999999999987 44788999999999995 57799999
Q ss_pred HHHHHHHHHhhhhhcC
Q 043859 466 SLARLAKECGMMTKRN 481 (484)
Q Consensus 466 ~~~~~~~~~~~~~~~~ 481 (484)
++++|++++.++.+..
T Consensus 435 ~l~~lv~~~~~~~~~~ 450 (453)
T PLN02764 435 YVDNFIESLQDLVSGT 450 (453)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999987654
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.5e-62 Score=490.69 Aligned_cols=447 Identities=30% Similarity=0.573 Sum_probs=331.0
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCCC---eEEEEecCCCchhHHHHHhhhc-cCCCceEEEecCCCCCCCCCC
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYNF---QVTIFVVASQTSAAESKILQSA-MSSKLCHVIEIPAPDISGLVD 80 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh---~Vt~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~ 80 (484)
+++.||+++|+|++||++|++.||+.|+.+ |. .||+++++.......+..+... .....++|.++|....+....
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~-G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~ 79 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINL-DRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPME 79 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhC-CCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccc
Confidence 457799999999999999999999999998 74 5666665532211111112211 111259999998643111000
Q ss_pred -CCchHHHHHHHHHHHhhHHHHHHHHhcC-------C-CCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhh
Q 043859 81 -PDAAVVTIISVIMREIKPAFRSAISALK-------T-TPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYA 151 (484)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------~-~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~ 151 (484)
........+......+.+.+++.++++. . +++|||+|.+.+|+..+|+++|||++.+++++++.++.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~ 159 (475)
T PLN02167 80 LFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYL 159 (475)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHH
Confidence 0111112344455556666666666541 1 359999999999999999999999999999999888888766
Q ss_pred ccccccccCcc--ccCCccccCCCCC-CCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhh
Q 043859 152 PTLDKTVQGQY--VVQNESFNIPGCR-PLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRD 228 (484)
Q Consensus 152 p~~~~~~~~~~--~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 228 (484)
+.......... ....+.+.+||++ .++..+++..+.... .+..+.+..+...+++++++|||.+||+.++.+++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~ 237 (475)
T PLN02167 160 PERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE--SYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSR 237 (475)
T ss_pred HHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc--hHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHh
Confidence 54322111111 0112335688984 577777775443321 244455666667788899999999999999988854
Q ss_pred ccccCCCCCCCeEEeccccCCCC----C--CCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEE
Q 043859 229 DKSLGRITKVPIYTVGPIIRRLG----P--AGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFI 302 (484)
Q Consensus 229 ~~~~~rp~~p~~~~vGpl~~~~~----~--~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 302 (484)
... .+|++++|||++.... . ...+.++.+||+.++++++|||||||+...+.+++.+++.+|+.++.+||
T Consensus 238 ~~~----~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~fl 313 (475)
T PLN02167 238 LPE----NYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFL 313 (475)
T ss_pred hcc----cCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEE
Confidence 210 1467999999975321 0 11225799999999888999999999988889999999999999999999
Q ss_pred EEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcC
Q 043859 303 WVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNG 382 (484)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~G 382 (484)
|+++.+... .......+|++|.++++..++++ +|+||.+||+|+++++|||||||||++||+++|
T Consensus 314 w~~~~~~~~--------------~~~~~~~lp~~~~er~~~rg~v~-~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~G 378 (475)
T PLN02167 314 WSIRTNPAE--------------YASPYEPLPEGFMDRVMGRGLVC-GWAPQVEILAHKAIGGFVSHCGWNSVLESLWFG 378 (475)
T ss_pred EEEecCccc--------------ccchhhhCChHHHHHhccCeeee-ccCCHHHHhcCcccCeEEeeCCcccHHHHHHcC
Confidence 999753210 00012468899999887766545 999999999999999999999999999999999
Q ss_pred CceeecccccccchhHHHHHhhhcceEEeeec---CCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcC
Q 043859 383 VPMIVWPLYSEQRMNATILTEELGVAIRSKVL---PSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRE 459 (484)
Q Consensus 383 vP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~---~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~ 459 (484)
||||++|+++||+.||+++++++|+|+.+... +....+++++|+++|+++|.+++ .||+||+++++.+++|+ .+
T Consensus 379 vP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~--~~r~~a~~~~~~~~~av-~~ 455 (475)
T PLN02167 379 VPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGED--VPRKKVKEIAEAARKAV-MD 455 (475)
T ss_pred CCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHH-hC
Confidence 99999999999999998754799999998631 00135799999999999998652 49999999999999999 99
Q ss_pred CCChHHHHHHHHHHHhh
Q 043859 460 SGSSYSSLARLAKECGM 476 (484)
Q Consensus 460 ~g~~~~~~~~~~~~~~~ 476 (484)
|||+++++++|++++..
T Consensus 456 gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 456 GGSSFVAVKRFIDDLLG 472 (475)
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 99999999999998865
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=2.6e-47 Score=386.89 Aligned_cols=387 Identities=18% Similarity=0.174 Sum_probs=259.0
Q ss_pred CeEEEE-cCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCC--CCC------CC
Q 043859 8 PHAVLL-ASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAP--DIS------GL 78 (484)
Q Consensus 8 ~~il~~-~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~------~~ 78 (484)
-||+.+ |.++.+|+.-+..++++|++| ||+||++++..... .... ...+++.+.++.. ... ..
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~r-GH~VTvi~p~~~~~------~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAER-GHNVTVIKPTLRVY------YASH-LCGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHc-CCeEEEEecccccc------cccC-CCCCEEEEEcCCChHHHHHHHhhhhH
Confidence 357655 779999999999999999999 99999998764210 0000 1124555554310 000 00
Q ss_pred CCC--C-ch---H-HHHHHHHHHHh-----hHHHHHHHH--hcCCCCeEEEeCCchhhHHHHHHHh-CCCeEEEecccHH
Q 043859 79 VDP--D-AA---V-VTIISVIMREI-----KPAFRSAIS--ALKTTPTALIVDLFGTESLAIAEEL-QIPKYVYVGTNAW 143 (484)
Q Consensus 79 ~~~--~-~~---~-~~~~~~~~~~~-----~~~l~~~l~--~~~~~pD~VI~D~~~~~~~~~A~~l-gIP~v~~~~~~~~ 143 (484)
+.. . .+ . ...+......| .+.+.++++ +. ++|+||+|.+..|+..+|+++ ++|+|.+++....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~--kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~ 170 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNN--KFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGL 170 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCC--ceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCc
Confidence 000 0 00 0 00001111112 234556665 33 799999999999999999999 9998887764432
Q ss_pred -HHHHHHh-hccccccccCccccCCccccCCCCC-CCCcCCCCCccc----cCCchhHHHHHHh----h-hcccCccEEE
Q 043859 144 -CVALFVY-APTLDKTVQGQYVVQNESFNIPGCR-PLRPEDVVDPML----DRTNQQYFEYVHI----G-EEIPLSDGIL 211 (484)
Q Consensus 144 -~~~~~~~-~p~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~----~-~~~~~~~~~l 211 (484)
......+ .|..++++|.......+.+.+.... .+.......... ......++..... . +.....+.++
T Consensus 171 ~~~~~~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~l 250 (507)
T PHA03392 171 AENFETMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLF 250 (507)
T ss_pred hhHHHhhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEE
Confidence 2233333 5555555543333333322222111 000000000000 0001111111100 0 0112334566
Q ss_pred EcChhhhcHHHHHHHhhccccCCCCCCCeEEeccccCCC-CCCCCccccccccCCCCCCeEEEEecCCCCC---CCHHHH
Q 043859 212 VNTWEDLQPTALTALRDDKSLGRITKVPIYTVGPIIRRL-GPAGSWNELFDWLDKQPSESVLYVSFGSGGT---LTYEQI 287 (484)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~~~~rp~~p~~~~vGpl~~~~-~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~---~~~~~~ 287 (484)
+|+.+.++.+ ||..|++++|||++.+. ...+.++++.+|++.. ++++|||||||+.. .+.+.+
T Consensus 251 vns~~~~d~~------------rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~ 317 (507)
T PHA03392 251 VNVHPVFDNN------------RPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNS-TNGVVYVSFGSSIDTNDMDNEFL 317 (507)
T ss_pred EecCccccCC------------CCCCCCeeeecccccCCCCCCCCCHHHHHHHhcC-CCcEEEEECCCCCcCCCCCHHHH
Confidence 7776666544 88666699999998753 3345788999999887 45799999999853 567889
Q ss_pred HHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccc
Q 043859 288 TELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFL 367 (484)
Q Consensus 288 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~I 367 (484)
+.+++|++..+.+|||+++.... ...+|+ |+.+.+|+||.++|+|+.+++||
T Consensus 318 ~~~l~a~~~l~~~viw~~~~~~~-------------------~~~~p~---------Nv~i~~w~Pq~~lL~hp~v~~fI 369 (507)
T PHA03392 318 QMLLRTFKKLPYNVLWKYDGEVE-------------------AINLPA---------NVLTQKWFPQRAVLKHKNVKAFV 369 (507)
T ss_pred HHHHHHHHhCCCeEEEEECCCcC-------------------cccCCC---------ceEEecCCCHHHHhcCCCCCEEE
Confidence 99999999999999999853211 013444 99999999999999999999999
Q ss_pred cccCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHH
Q 043859 368 SHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKE 447 (484)
Q Consensus 368 tHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~ 447 (484)
||||+||++||+++|||||++|+++||+.||+|+ +++|+|+.++. ..+++++|+++|+++|+|++ |++||++
T Consensus 370 tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~----~~~t~~~l~~ai~~vl~~~~---y~~~a~~ 441 (507)
T PHA03392 370 TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDT----VTVSAAQLVLAIVDVIENPK---YRKNLKE 441 (507)
T ss_pred ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEecc----CCcCHHHHHHHHHHHhCCHH---HHHHHHH
Confidence 9999999999999999999999999999999999 69999999874 68899999999999999988 9999999
Q ss_pred HHHHHH
Q 043859 448 LQRSAQ 453 (484)
Q Consensus 448 l~~~~~ 453 (484)
+++.++
T Consensus 442 ls~~~~ 447 (507)
T PHA03392 442 LRHLIR 447 (507)
T ss_pred HHHHHH
Confidence 999987
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=9.9e-49 Score=404.12 Aligned_cols=381 Identities=23% Similarity=0.299 Sum_probs=216.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCC-chHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPD-AAVVT 87 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~ 87 (484)
||+++|. +.||+.++..|+++|++| ||+||++++.... .+.. ....++++..++........... .+...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~r-GH~VTvl~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAER-GHNVTVLTPSPSS------SLNP-SKPSNIRFETYPDPYPEEEFEEIFPEFIS 72 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH--TTSEEEHHHHHH------T-------S-CCEEEE-----TT------TTHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhc-CCceEEEEeeccc------cccc-ccccceeeEEEcCCcchHHHhhhhHHHHH
Confidence 5777774 889999999999999999 9999999876311 1110 01124556665532211111111 11000
Q ss_pred H----------HHHHHH---Hhh-------------HHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEeccc
Q 043859 88 I----------ISVIMR---EIK-------------PAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTN 141 (484)
Q Consensus 88 ~----------~~~~~~---~~~-------------~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~ 141 (484)
. +..... ... +.+.+.+++. ++|++|+|.+.+|+..+|+.++||.+.+.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~--~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~ 150 (500)
T PF00201_consen 73 KFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE--KFDLVISDAFDPCGLALAHYLGIPVIIISSST 150 (500)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH--HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCC
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--ccccceEeeccchhHHHHHHhcCCeEEEeccc
Confidence 0 100000 000 1122233333 79999999999999999999999987654322
Q ss_pred HHHHHHHHhhccccccccCccccCCccccCCCCCCCCcCCCCC--ccccCCchh-H----HHHHHhhhcccCccEEEEcC
Q 043859 142 AWCVALFVYAPTLDKTVQGQYVVQNESFNIPGCRPLRPEDVVD--PMLDRTNQQ-Y----FEYVHIGEEIPLSDGILVNT 214 (484)
Q Consensus 142 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~-~----~~~~~~~~~~~~~~~~l~~~ 214 (484)
.. +....... .....|...+.....+.. .+.+|.... . ................-...
T Consensus 151 ~~--------~~~~~~~~-------g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (500)
T PF00201_consen 151 PM--------YDLSSFSG-------GVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFG 215 (500)
T ss_dssp SC--------SCCTCCTS-------CCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS
T ss_pred cc--------chhhhhcc-------CCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcc
Confidence 10 00000000 000011111111111111 122221111 1 11111111110011111111
Q ss_pred ----hhhhcHHH-HHHHhhc--cccCCCCCCCeEEeccccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCH-HH
Q 043859 215 ----WEDLQPTA-LTALRDD--KSLGRITKVPIYTVGPIIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTY-EQ 286 (484)
Q Consensus 215 ----~~~l~~~~-~~~~~~~--~~~~rp~~p~~~~vGpl~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~ 286 (484)
..++.... +..+.+. .+++||..|++++||+++... +.+.+.++.+|++...++++|||||||+....+ +.
T Consensus 216 ~~~~~~~~~~~~~l~l~ns~~~ld~prp~~p~v~~vGgl~~~~-~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~ 294 (500)
T PF00201_consen 216 FPFSFRELLSNASLVLINSHPSLDFPRPLLPNVVEVGGLHIKP-AKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEK 294 (500)
T ss_dssp -GGGCHHHHHHHHHCCSSTEEE----HHHHCTSTTGCGC-S-----TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHH
T ss_pred cccccHHHHHHHHHHhhhccccCcCCcchhhcccccCcccccc-ccccccccchhhhccCCCCEEEEecCcccchhHHHH
Confidence 11111111 1112222 345588777899999998763 346788999999985578999999999965444 45
Q ss_pred HHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCcccc
Q 043859 287 ITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGF 366 (484)
Q Consensus 287 ~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ 366 (484)
.++++++++.++.+|||++.+. ....+|+ |+.+.+|+||.+||+|+++++|
T Consensus 295 ~~~~~~~~~~~~~~~iW~~~~~--------------------~~~~l~~---------n~~~~~W~PQ~~lL~hp~v~~f 345 (500)
T PF00201_consen 295 LKEIAEAFENLPQRFIWKYEGE--------------------PPENLPK---------NVLIVKWLPQNDLLAHPRVKLF 345 (500)
T ss_dssp HHHHHHHHHCSTTEEEEEETCS--------------------HGCHHHT---------TEEEESS--HHHHHTSTTEEEE
T ss_pred HHHHHHHHhhCCCccccccccc--------------------ccccccc---------eEEEeccccchhhhhcccceee
Confidence 8999999999999999999432 1233333 8889999999999999999999
Q ss_pred ccccCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHH
Q 043859 367 LSHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVK 446 (484)
Q Consensus 367 ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~ 446 (484)
|||||+||++||+++|||||++|+++||+.||+|+ ++.|+|+.++. ..++.++|.++|+++|+|++ |++||+
T Consensus 346 itHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~----~~~~~~~l~~ai~~vl~~~~---y~~~a~ 417 (500)
T PF00201_consen 346 ITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDK----NDLTEEELRAAIREVLENPS---YKENAK 417 (500)
T ss_dssp EES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGG----GC-SHHHHHHHHHHHHHSHH---HHHHHH
T ss_pred eeccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEe----cCCcHHHHHHHHHHHHhhhH---HHHHHH
Confidence 99999999999999999999999999999999999 79999999874 78999999999999999988 999999
Q ss_pred HHHHHHH
Q 043859 447 ELQRSAQ 453 (484)
Q Consensus 447 ~l~~~~~ 453 (484)
++++..+
T Consensus 418 ~ls~~~~ 424 (500)
T PF00201_consen 418 RLSSLFR 424 (500)
T ss_dssp HHHHTTT
T ss_pred HHHHHHh
Confidence 9999976
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.3e-42 Score=347.47 Aligned_cols=358 Identities=20% Similarity=0.214 Sum_probs=231.1
Q ss_pred EcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCC-CCCCCC--chHHHHH
Q 043859 13 LASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDIS-GLVDPD--AAVVTII 89 (484)
Q Consensus 13 ~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~--~~~~~~~ 89 (484)
+.+|++||++|++.||++|+++ ||+|+|++++.+.+.+.+.+ +.+..++..... +..+.. .+....+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~-Gh~V~~~~~~~~~~~v~~~G---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVAR-GHRVTYATTEEFAERVEAAG---------AEFVLYGSALPPPDNPPENTEEEPIDII 70 (392)
T ss_pred CCCCccccccccHHHHHHHHhC-CCeEEEEeCHHHHHHHHHcC---------CEEEecCCcCccccccccccCcchHHHH
Confidence 3689999999999999999999 99999999998876654444 455555431111 010110 1112222
Q ss_pred HHHHH---HhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCccccCC
Q 043859 90 SVIMR---EIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVVQN 166 (484)
Q Consensus 90 ~~~~~---~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 166 (484)
..+.. ...+.+...++.+ +||+||+|.+++++..+|+++|||+|.+++..... ...+... + +.
T Consensus 71 ~~~~~~~~~~~~~l~~~~~~~--~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~---~-~~---- 136 (392)
T TIGR01426 71 EKLLDEAEDVLPQLEEAYKGD--RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMV---S-PA---- 136 (392)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----ccccccc---c-cc----
Confidence 22222 2223344444555 99999999988889999999999999875432100 0000000 0 00
Q ss_pred ccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhc-cc--------CccEEEEcChhhhcHHHHHHHhhccccCCCCC
Q 043859 167 ESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEE-IP--------LSDGILVNTWEDLQPTALTALRDDKSLGRITK 237 (484)
Q Consensus 167 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~ 237 (484)
.+.+.. ................+.+.+.... .. .....+..+.. .+++.++.+
T Consensus 137 ----~~~~~~--~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~------------~l~~~~~~~ 198 (392)
T TIGR01426 137 ----GEGSAE--EGAIAERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPK------------AFQPAGETF 198 (392)
T ss_pred ----chhhhh--hhccccchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCCh------------HhCCCcccc
Confidence 000000 0000000000000011111111100 00 00001111111 112223346
Q ss_pred CC-eEEeccccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCC
Q 043859 238 VP-IYTVGPIIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGS 316 (484)
Q Consensus 238 p~-~~~vGpl~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~ 316 (484)
|+ ++++||+..... +...|+...+++++||||+||+.......+..++++++..+.+++|..+.....
T Consensus 199 ~~~~~~~Gp~~~~~~------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~----- 267 (392)
T TIGR01426 199 DDSFTFVGPCIGDRK------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP----- 267 (392)
T ss_pred CCCeEEECCCCCCcc------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh-----
Confidence 65 999999876521 233477666678899999999866666688999999999999999987432110
Q ss_pred cccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceeecccccccch
Q 043859 317 FFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRM 396 (484)
Q Consensus 317 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~ 396 (484)
+ ....+| +|+.+.+|+||.++|++++ ++|||||+||++||+++|+|+|++|...||+.
T Consensus 268 ----------~-~~~~~~---------~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~ 325 (392)
T TIGR01426 268 ----------A-DLGELP---------PNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPM 325 (392)
T ss_pred ----------h-HhccCC---------CCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCcccHHH
Confidence 0 011222 3889989999999999999 89999999999999999999999999999999
Q ss_pred hHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 043859 397 NATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQ 453 (484)
Q Consensus 397 na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~ 453 (484)
||.++ ++.|+|+.+.. ..+++++|.++|.++|.|++ |+++++++++.++
T Consensus 326 ~a~~l-~~~g~g~~l~~----~~~~~~~l~~ai~~~l~~~~---~~~~~~~l~~~~~ 374 (392)
T TIGR01426 326 TARRI-AELGLGRHLPP----EEVTAEKLREAVLAVLSDPR---YAERLRKMRAEIR 374 (392)
T ss_pred HHHHH-HHCCCEEEecc----ccCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHH
Confidence 99999 69999999863 67899999999999999987 9999999999976
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.1e-41 Score=342.31 Aligned_cols=369 Identities=16% Similarity=0.102 Sum_probs=230.8
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCC---C----
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLV---D---- 80 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~---- 80 (484)
|||+|+++|+.||++|+++||++|++| ||+|+|++++.+...+ +..+ ++|..++........ .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~r-Gh~V~~~t~~~~~~~v-----~~~G----~~~~~~~~~~~~~~~~~~~~~~~ 70 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA-GHEVRVATPPEFADLV-----EAAG----LEFVPVGGDPDELLASPERNAGL 70 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHC-CCeEEEeeCHhHHHHH-----HHcC----CceeeCCCCHHHHHhhhhhcccc
Confidence 799999999999999999999999999 9999999999876544 3444 556555531100000 0
Q ss_pred ---CCchHHHH---HHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccc
Q 043859 81 ---PDAAVVTI---ISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTL 154 (484)
Q Consensus 81 ---~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~ 154 (484)
........ +..........+.+.++++ +||+||+|.+.+++..+|+++|||++.+++++....... .|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~--~~~- 145 (401)
T cd03784 71 LLLGPGLLLGALRLLRREAEAMLDDLVAAARDW--GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF--PPP- 145 (401)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC--CCc-
Confidence 00011111 1222222333334444445 999999999999889999999999999887653211000 000
Q ss_pred cccccCccccCCccccCCCCCCCCcCCCCCc-cccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccC
Q 043859 155 DKTVQGQYVVQNESFNIPGCRPLRPEDVVDP-MLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLG 233 (484)
Q Consensus 155 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 233 (484)
+.......+...... .............+... +........... ..+..+.+.+...
T Consensus 146 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-l~~~~~~~~~~~-----~~~~~~~~~~~~~ 203 (401)
T cd03784 146 ----------------LGRANLRLYALLEAELWQDLLGAWLRARRRRLG-LPPLSLLDGSDV-----PELYGFSPAVLPP 203 (401)
T ss_pred ----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcccccCCC-----cEEEecCcccCCC
Confidence 000000000000000 00000000111111111 000000000000 0000011111112
Q ss_pred CCCCCC-eEEec-cccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCC-HHHHHHHHHHHhhCCCcEEEEEeCCCC
Q 043859 234 RITKVP-IYTVG-PIIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLT-YEQITELAWGLELSQQRFIWVVRLPNE 310 (484)
Q Consensus 234 rp~~p~-~~~vG-pl~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~ 310 (484)
++.+++ ..++| ++...+.+...+.++..|++. .+++||||+||+.... ......++++++..+.++||+++....
T Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~ 281 (401)
T cd03784 204 PPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGL 281 (401)
T ss_pred CCCccccCcEeCCCCCCCCCCCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccc
Confidence 344666 77886 444332223345677788865 4579999999986644 456888999999889999999854321
Q ss_pred CCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceeeccc
Q 043859 311 TTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPL 390 (484)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~ 390 (484)
....+| +|+.+.+|+||.++|++++ +||||||+||++|++++|||+|++|.
T Consensus 282 ------------------~~~~~~---------~~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~~GvP~v~~P~ 332 (401)
T cd03784 282 ------------------GAEDLP---------DNVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALRAGVPQLVVPF 332 (401)
T ss_pred ------------------cccCCC---------CceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHHcCCCEEeeCC
Confidence 011223 3899999999999999999 89999999999999999999999999
Q ss_pred ccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 043859 391 YSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQ 453 (484)
Q Consensus 391 ~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~ 453 (484)
..||+.||+++ ++.|+|+.+.. ..+++++|.++|+++|+++ ++++++++++.++
T Consensus 333 ~~dQ~~~a~~~-~~~G~g~~l~~----~~~~~~~l~~al~~~l~~~----~~~~~~~~~~~~~ 386 (401)
T cd03784 333 FGDQPFWAARV-AELGAGPALDP----RELTAERLAAALRRLLDPP----SRRRAAALLRRIR 386 (401)
T ss_pred CCCcHHHHHHH-HHCCCCCCCCc----ccCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHH
Confidence 99999999999 79999999864 5689999999999999864 5566666666643
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-41 Score=331.19 Aligned_cols=387 Identities=21% Similarity=0.237 Sum_probs=241.3
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCc-hH
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDA-AV 85 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~ 85 (484)
+|||+|+..|..||++|+++||++|.++ ||+|+|++++.+.+.+++. + +.|..++............ ..
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~-gheV~~~~~~~~~~~ve~a-----g----~~f~~~~~~~~~~~~~~~~~~~ 70 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRR-GHEVVFASTGKFKEFVEAA-----G----LAFVAYPIRDSELATEDGKFAG 70 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhc-CCeEEEEeCHHHHHHHHHh-----C----cceeeccccCChhhhhhhhhhc
Confidence 5899999999999999999999999999 9999999999988665444 4 4455555431111101111 00
Q ss_pred HHH---HHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCcc
Q 043859 86 VTI---ISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQY 162 (484)
Q Consensus 86 ~~~---~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~ 162 (484)
... ...........+.+++.+. .||+++.|.....+ .+++..++|++.......+. +|......+ .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~ 139 (406)
T COG1819 71 VKSFRRLLQQFKKLIRELLELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTP------LPAAGLPLP--P 139 (406)
T ss_pred cchhHHHhhhhhhhhHHHHHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccC------CcccccCcc--c
Confidence 111 1122222333445566666 99999999655544 88999999987654332211 111100000 0
Q ss_pred ccCCccccCCCCCCCCcCCCCCcccc-CCchhHHHHHHhhhcccCccEEEEcChhhh----cHHHHHHHhhccccCCCCC
Q 043859 163 VVQNESFNIPGCRPLRPEDVVDPMLD-RTNQQYFEYVHIGEEIPLSDGILVNTWEDL----QPTALTALRDDKSLGRITK 237 (484)
Q Consensus 163 ~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l----~~~~~~~~~~~~~~~rp~~ 237 (484)
.........+ ...++..... .....+. ......+......+..+....+ ....+.+....+..++. +
T Consensus 140 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 211 (406)
T COG1819 140 VGIAGKLPIP------LYPLPPRLVRPLIFARSW-LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDR-L 211 (406)
T ss_pred cccccccccc------ccccChhhccccccchhh-hhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCC-C
Confidence 0000000011 1101000000 0000000 0000000000000001100000 00000111111000011 2
Q ss_pred CC-eEEeccccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCC
Q 043859 238 VP-IYTVGPIIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGS 316 (484)
Q Consensus 238 p~-~~~vGpl~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~ 316 (484)
|. ..++||+... ...+...|.. .++++||+|+||.... .++++.+++++..++.+||..+.. .+
T Consensus 212 p~~~~~~~~~~~~-----~~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~------ 276 (406)
T COG1819 212 PFIGPYIGPLLGE-----AANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-AR------ 276 (406)
T ss_pred CCCcCcccccccc-----ccccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-cc------
Confidence 43 5677777665 2345555533 3567999999999765 788999999999999999999854 11
Q ss_pred cccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceeecccccccch
Q 043859 317 FFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRM 396 (484)
Q Consensus 317 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~ 396 (484)
+ ....+|. |+.+.+|+||.++|++++ +||||||+|||+|||++|||+|++|...||+.
T Consensus 277 ----------~-~~~~~p~---------n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~ 334 (406)
T COG1819 277 ----------D-TLVNVPD---------NVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVVIPDGADQPL 334 (406)
T ss_pred ----------c-ccccCCC---------ceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEEecCCcchhH
Confidence 0 2355666 999999999999999999 89999999999999999999999999999999
Q ss_pred hHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHH
Q 043859 397 NATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKE 473 (484)
Q Consensus 397 na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~ 473 (484)
||.|+ ++.|+|+.++. +.++++.|+++|+++|+|+. |+++++++++.++ .++| .+.+.+++++
T Consensus 335 nA~rv-e~~G~G~~l~~----~~l~~~~l~~av~~vL~~~~---~~~~~~~~~~~~~----~~~g--~~~~a~~le~ 397 (406)
T COG1819 335 NAERV-EELGAGIALPF----EELTEERLRAAVNEVLADDS---YRRAAERLAEEFK----EEDG--PAKAADLLEE 397 (406)
T ss_pred HHHHH-HHcCCceecCc----ccCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHhh----hccc--HHHHHHHHHH
Confidence 99999 79999999875 78999999999999999988 9999999999977 3333 4445555555
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=4.5e-40 Score=339.72 Aligned_cols=406 Identities=28% Similarity=0.394 Sum_probs=241.9
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchH-
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAV- 85 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~- 85 (484)
+.|++++++|++||++|++.+|++|+++ ||+||++++.......... ..... ...+....++.....+.++.....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~-gh~vt~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAER-GHNVTVVTPSFNALKLSKS-SKSKS-IKKINPPPFEFLTIPDGLPEGWEDD 81 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHc-CCceEEEEeechhcccCCc-cccee-eeeeecChHHhhhhhhhhccchHHH
Confidence 5689999999999999999999999999 9999999999654321110 00000 000011111111111111222211
Q ss_pred ----HHHHHHHHHHhhHHHHHHHHhc----CCCCeEEEeCCchhhHHHHHHHhC-CCeEEEecccHHHHHHHHhhccccc
Q 043859 86 ----VTIISVIMREIKPAFRSAISAL----KTTPTALIVDLFGTESLAIAEELQ-IPKYVYVGTNAWCVALFVYAPTLDK 156 (484)
Q Consensus 86 ----~~~~~~~~~~~~~~l~~~l~~~----~~~pD~VI~D~~~~~~~~~A~~lg-IP~v~~~~~~~~~~~~~~~~p~~~~ 156 (484)
..........+...+++.+..+ ..++|++|+|.+..+...+|.... |+..++.+.++.......+.+. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~--~ 159 (496)
T KOG1192|consen 82 DLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL--S 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc--c
Confidence 1112334444444454434333 224999999997666666676664 8888877766654433322221 1
Q ss_pred cccCccccCC-ccccCCCCCC-CCcCCCCCccccCC-chhHHH-HHHhhhcc----cCccEEEEcC-hhhhcHHHHHHHh
Q 043859 157 TVQGQYVVQN-ESFNIPGCRP-LRPEDVVDPMLDRT-NQQYFE-YVHIGEEI----PLSDGILVNT-WEDLQPTALTALR 227 (484)
Q Consensus 157 ~~~~~~~~~~-~~~~~p~~~~-~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~----~~~~~~l~~~-~~~l~~~~~~~~~ 227 (484)
+.+....... +...+++... +....++....... ...... ........ .....++.++ +..++....
T Consensus 160 ~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~---- 235 (496)
T KOG1192|consen 160 YVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPL---- 235 (496)
T ss_pred ccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcc----
Confidence 2221111000 1111111110 00000000000000 000000 00111110 1111233333 333333211
Q ss_pred hcccc-CCCCCCCeEEeccccCCCCCCCCccccccccCCCCCC--eEEEEecCCCC---CCCHHHHHHHHHHHhhC-CCc
Q 043859 228 DDKSL-GRITKVPIYTVGPIIRRLGPAGSWNELFDWLDKQPSE--SVLYVSFGSGG---TLTYEQITELAWGLELS-QQR 300 (484)
Q Consensus 228 ~~~~~-~rp~~p~~~~vGpl~~~~~~~~~~~~~~~~l~~~~~~--~~v~vs~Gs~~---~~~~~~~~~~~~al~~~-~~~ 300 (484)
.++ ++|..+++++|||+...... .....+.+|++..+.. ++|||||||+. .++.+...+++.+++.+ ++.
T Consensus 236 --~~~~~~~~~~~v~~IG~l~~~~~~-~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~ 312 (496)
T KOG1192|consen 236 --LDFEPRPLLPKVIPIGPLHVKDSK-QKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVT 312 (496)
T ss_pred --cCCCCCCCCCCceEECcEEecCcc-ccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCce
Confidence 112 25546779999999987221 1111466777765544 89999999997 78999999999999999 888
Q ss_pred EEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcchhhh-ccCCCccccccccCchhHHHHH
Q 043859 301 FIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAPQIDI-LSHPSVGGFLSHCGWNSTLESI 379 (484)
Q Consensus 301 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ipq~~v-L~~~~~~~~ItHgG~gs~~eal 379 (484)
|+|++..... ..+++++.++ ...|+...+|+||.++ |.|.++++||||||+||++|++
T Consensus 313 FiW~~~~~~~--------------------~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~ 371 (496)
T KOG1192|consen 313 FLWKYRPDDS--------------------IYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESI 371 (496)
T ss_pred EEEEecCCcc--------------------hhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHH
Confidence 9999965421 0022222222 2347888899999998 5999999999999999999999
Q ss_pred hcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 043859 380 TNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQ 453 (484)
Q Consensus 380 ~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~ 453 (484)
++|||||++|+++||+.||++++ +.|.+..+.. ...+...+.+++.+++.+++ |+++|+++++..+
T Consensus 372 ~~GvP~v~~Plf~DQ~~Na~~i~-~~g~~~v~~~----~~~~~~~~~~~~~~il~~~~---y~~~~~~l~~~~~ 437 (496)
T KOG1192|consen 372 YSGVPMVCVPLFGDQPLNARLLV-RHGGGGVLDK----RDLVSEELLEAIKEILENEE---YKEAAKRLSEILR 437 (496)
T ss_pred hcCCceecCCccccchhHHHHHH-hCCCEEEEeh----hhcCcHHHHHHHHHHHcChH---HHHHHHHHHHHHH
Confidence 99999999999999999999995 5555544442 45555559999999999998 9999999999866
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=8.9e-27 Score=227.71 Aligned_cols=323 Identities=20% Similarity=0.191 Sum_probs=204.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTI 88 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 88 (484)
+|+|.+.++-||++|.++||++|.++ ||+|+|++++... +..+++..+ +.+..++...+... ........
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~-g~~v~~vg~~~~~---e~~l~~~~g----~~~~~~~~~~l~~~--~~~~~~~~ 72 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKED-NWDISYIGSHQGI---EKTIIEKEN----IPYYSISSGKLRRY--FDLKNIKD 72 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhC-CCEEEEEECCCcc---ccccCcccC----CcEEEEeccCcCCC--chHHHHHH
Confidence 79999999999999999999999999 9999999988644 234444444 67777764322211 01111222
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhh--HHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCccccCC
Q 043859 89 ISVIMREIKPAFRSAISALKTTPTALIVDLFGTE--SLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVVQN 166 (484)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~--~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 166 (484)
...... ..-....+++++ +||+||+...+.+ +..+|..+++|+++...+.
T Consensus 73 ~~~~~~-~~~~~~~i~~~~--kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~------------------------- 124 (352)
T PRK12446 73 PFLVMK-GVMDAYVRIRKL--KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM------------------------- 124 (352)
T ss_pred HHHHHH-HHHHHHHHHHhc--CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC-------------------------
Confidence 222222 223345678888 9999998864443 4579999999987754321
Q ss_pred ccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCCCeEEeccc
Q 043859 167 ESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKVPIYTVGPI 246 (484)
Q Consensus 167 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p~~~~vGpl 246 (484)
.+|+ ...+. .+.++.+.+ +|++-... + + ..+++++|+.
T Consensus 125 ----~~g~-------------------~nr~~-----~~~a~~v~~-~f~~~~~~----------~--~-~~k~~~tG~P 162 (352)
T PRK12446 125 ----TPGL-------------------ANKIA-----LRFASKIFV-TFEEAAKH----------L--P-KEKVIYTGSP 162 (352)
T ss_pred ----CccH-------------------HHHHH-----HHhhCEEEE-Eccchhhh----------C--C-CCCeEEECCc
Confidence 0110 00000 122233332 33321111 0 0 1248899977
Q ss_pred cCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHH-HHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCC
Q 043859 247 IRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQ-ITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAG 325 (484)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~-~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 325 (484)
+++.......+...+.+.-.+++++|+|+.||++....+. +..++..+.. +.+++|+++...
T Consensus 163 vr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~---------------- 225 (352)
T PRK12446 163 VREEVLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN---------------- 225 (352)
T ss_pred CCcccccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch----------------
Confidence 7653211111222222333345779999999997654433 4444444432 478888874321
Q ss_pred CCCccCCCchhHHHhhcCCceEecCCc-ch-hhhccCCCccccccccCchhHHHHHhcCCceeecccc-----cccchhH
Q 043859 326 DDDLSSLLPDGFLSRTLDIGVVVPQWA-PQ-IDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLY-----SEQRMNA 398 (484)
Q Consensus 326 ~~~~~~~lp~~~~~~~~~~~v~v~~~i-pq-~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~-----~DQ~~na 398 (484)
+ +..... ..++.+..|+ +. .+++++++ ++|||||.+|+.|++++|+|+|++|+. .||..||
T Consensus 226 -------~-~~~~~~--~~~~~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na 293 (352)
T PRK12446 226 -------L-DDSLQN--KEGYRQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNA 293 (352)
T ss_pred -------H-HHHHhh--cCCcEEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHH
Confidence 0 111111 1245556887 54 47999999 899999999999999999999999984 4899999
Q ss_pred HHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHH
Q 043859 399 TILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKE 447 (484)
Q Consensus 399 ~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~ 447 (484)
..+ ++.|+|..+.. ..++++.|.+++.+++.|++ .|++++++
T Consensus 294 ~~l-~~~g~~~~l~~----~~~~~~~l~~~l~~ll~~~~--~~~~~~~~ 335 (352)
T PRK12446 294 ESF-ERQGYASVLYE----EDVTVNSLIKHVEELSHNNE--KYKTALKK 335 (352)
T ss_pred HHH-HHCCCEEEcch----hcCCHHHHHHHHHHHHcCHH--HHHHHHHH
Confidence 999 69999998862 68899999999999998853 25544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=1.9e-24 Score=210.28 Aligned_cols=303 Identities=20% Similarity=0.209 Sum_probs=189.5
Q ss_pred CeEEEEcCC-CccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHH
Q 043859 8 PHAVLLASP-GVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVV 86 (484)
Q Consensus 8 ~~il~~~~p-~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (484)
|||+|...+ |.||+..+++||++| | ||+|+|++.....+.+... +....++....... ....+..
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--r-g~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~ 66 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--R-GHEVTFITSGPAPEFLKPR----------FPVREIPGLGPIQE-NGRLDRW 66 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--c-cCceEEEEcCCcHHHhccc----------cCEEEccCceEecc-CCccchH
Confidence 899999987 999999999999999 7 8999999998643322111 22333343221111 1111111
Q ss_pred HHHH------HHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccC
Q 043859 87 TIIS------VIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQG 160 (484)
Q Consensus 87 ~~~~------~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 160 (484)
..+. .........+.+.+++. +||+||+| +.+.+..+|+..|||++.+........ +.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~------~~------- 130 (318)
T PF13528_consen 67 KTVRNNIRWLARLARRIRREIRWLREF--RPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLH------PN------- 130 (318)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHccc------cc-------
Confidence 1111 12233445556667777 99999999 455577899999999998775432110 00
Q ss_pred ccccCCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhc--ccCccEEEEcChhhhcHHHHHHHhhccccCCCCCC
Q 043859 161 QYVVQNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEE--IPLSDGILVNTWEDLQPTALTALRDDKSLGRITKV 238 (484)
Q Consensus 161 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p 238 (484)
. . + ...........+.... ...+...+..++. ... +...
T Consensus 131 -------------~------~----~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~--------------~~~~ 171 (318)
T PF13528_consen 131 -------------F------W----L-PWDQDFGRLIERYIDRYHFPPADRRLALSFY-PPL--------------PPFF 171 (318)
T ss_pred -------------C------C----c-chhhhHHHHHHHhhhhccCCcccceecCCcc-ccc--------------cccc
Confidence 0 0 0 0000011111122211 2333333333332 100 0012
Q ss_pred CeEEeccccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCC-CcEEEEEeCCCCCCCCCCc
Q 043859 239 PIYTVGPIIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQ-QRFIWVVRLPNETTGDGSF 317 (484)
Q Consensus 239 ~~~~vGpl~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~ 317 (484)
+..++||+...... +... .+++.|+|++|.... . .++++++..+ .++++. +....
T Consensus 172 ~~~~~~p~~~~~~~--------~~~~--~~~~~iLv~~gg~~~---~---~~~~~l~~~~~~~~~v~-g~~~~------- 227 (318)
T PF13528_consen 172 RVPFVGPIIRPEIR--------ELPP--EDEPKILVYFGGGGP---G---DLIEALKALPDYQFIVF-GPNAA------- 227 (318)
T ss_pred cccccCchhccccc--------ccCC--CCCCEEEEEeCCCcH---H---HHHHHHHhCCCCeEEEE-cCCcc-------
Confidence 36678888765221 0101 134579999997542 2 5667776655 565554 32210
Q ss_pred ccCCCCCCCCCccCCCchhHHHhhcCCceEecCCc--chhhhccCCCccccccccCchhHHHHHhcCCceeeccc--ccc
Q 043859 318 FTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWA--PQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPL--YSE 393 (484)
Q Consensus 318 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~i--pq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~--~~D 393 (484)
. ....|+.+..|. ...++|+.|+ ++|||||+||++|++++|+|+|++|. +.|
T Consensus 228 -------------~---------~~~~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~E 283 (318)
T PF13528_consen 228 -------------D---------PRPGNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALVIPRPGQDE 283 (318)
T ss_pred -------------c---------ccCCCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEEEeCCCCch
Confidence 0 113388888876 4567999999 89999999999999999999999998 789
Q ss_pred cchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHH
Q 043859 394 QRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRI 432 (484)
Q Consensus 394 Q~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~v 432 (484)
|..||+++ ++.|+|+.+.. +.++++.|++.|+++
T Consensus 284 Q~~~a~~l-~~~G~~~~~~~----~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 284 QEYNARKL-EELGLGIVLSQ----EDLTPERLAEFLERL 317 (318)
T ss_pred HHHHHHHH-HHCCCeEEccc----ccCCHHHHHHHHhcC
Confidence 99999999 79999999874 789999999999764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=4.7e-23 Score=198.99 Aligned_cols=313 Identities=18% Similarity=0.180 Sum_probs=200.5
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCC-eEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNF-QVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVV 86 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (484)
|+|+++..++-||+.|.++|+++|.++ |+ +|.+..+....+ ....+... +.++.++....... ......
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~-g~~~v~~~~~~~~~e---~~l~~~~~----~~~~~I~~~~~~~~--~~~~~~ 70 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKR-GWEQVIVLGTGDGLE---AFLVKQYG----IEFELIPSGGLRRK--GSLKLL 70 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhh-CccEEEEecccccce---eeeccccC----ceEEEEeccccccc--CcHHHH
Confidence 578999999999999999999999999 99 588887764332 23333333 66666665443322 111111
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchh--hHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCcccc
Q 043859 87 TIISVIMREIKPAFRSAISALKTTPTALIVDLFGT--ESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVV 164 (484)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~--~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 164 (484)
...+ ..-......+.+++++ +||+||.-..++ .+..+|..+|||+++.-+..
T Consensus 71 ~~~~-~~~~~~~~a~~il~~~--kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~----------------------- 124 (357)
T COG0707 71 KAPF-KLLKGVLQARKILKKL--KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA----------------------- 124 (357)
T ss_pred HHHH-HHHHHHHHHHHHHHHc--CCCEEEecCCccccHHHHHHHhCCCCEEEEecCC-----------------------
Confidence 1111 1222345678889999 999999854444 44568889999988765432
Q ss_pred CCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCC--CeEE
Q 043859 165 QNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKV--PIYT 242 (484)
Q Consensus 165 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p--~~~~ 242 (484)
.+|.. .... .+.++.+.. +|...+.. .+ +++.
T Consensus 125 ------~~G~a------------------nk~~------~~~a~~V~~-~f~~~~~~---------------~~~~~~~~ 158 (357)
T COG0707 125 ------VPGLA------------------NKIL------SKFAKKVAS-AFPKLEAG---------------VKPENVVV 158 (357)
T ss_pred ------Ccchh------------------HHHh------HHhhceeee-cccccccc---------------CCCCceEE
Confidence 11110 0000 111222222 33321111 22 3889
Q ss_pred eccccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHH-HHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCC
Q 043859 243 VGPIIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQ-ITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAG 321 (484)
Q Consensus 243 vGpl~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~-~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~ 321 (484)
+|-.++.+-.. .+.....+.... ++++|+|+.||++....+. +..+...+.. +.++++.++...
T Consensus 159 tG~Pvr~~~~~-~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~------------ 223 (357)
T COG0707 159 TGIPVRPEFEE-LPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND------------ 223 (357)
T ss_pred ecCcccHHhhc-cchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch------------
Confidence 99444431111 111222222221 5679999999997544332 3334444433 567777763321
Q ss_pred CCCCCCCccCCCchhHHHhhcCCc-eEecCCcchh-hhccCCCccccccccCchhHHHHHhcCCceeecccc----cccc
Q 043859 322 SGAGDDDLSSLLPDGFLSRTLDIG-VVVPQWAPQI-DILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLY----SEQR 395 (484)
Q Consensus 322 ~~~~~~~~~~~lp~~~~~~~~~~~-v~v~~~ipq~-~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~----~DQ~ 395 (484)
.+.........+ +.+..|+.++ ++|+.+| |+||++|.+|+.|+++.|+|+|.+|+. .||.
T Consensus 224 ------------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~ 289 (357)
T COG0707 224 ------------LEELKSAYNELGVVRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAILVPYPPGADGHQE 289 (357)
T ss_pred ------------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHH
Confidence 123444444334 7888899775 6999999 899999999999999999999999973 3899
Q ss_pred hhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhccc
Q 043859 396 MNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDE 436 (484)
Q Consensus 396 ~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~ 436 (484)
.||..+ ++.|.|+.++- ..+|.+.+.+.|.+++.++
T Consensus 290 ~NA~~l-~~~gaa~~i~~----~~lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 290 YNAKFL-EKAGAALVIRQ----SELTPEKLAELILRLLSNP 325 (357)
T ss_pred HHHHHH-HhCCCEEEecc----ccCCHHHHHHHHHHHhcCH
Confidence 999999 79999999873 6789999999999999973
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=3.9e-22 Score=193.71 Aligned_cols=304 Identities=17% Similarity=0.185 Sum_probs=172.2
Q ss_pred eEEEEcC-CCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceE-EEecCCCCCCCCCCCCchHH
Q 043859 9 HAVLLAS-PGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCH-VIEIPAPDISGLVDPDAAVV 86 (484)
Q Consensus 9 ~il~~~~-p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~ 86 (484)
||++... .+.||+.|.++||++|++ ||+|+|+++.... ..++..+ +. +..+|....... +...+..
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~--g~ev~~~~~~~~~-----~~~~~~~----~~~~~~~p~~~~~~~-~~~~~~~ 68 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN--DYEVSYIASGRSK-----NYISKYG----FKVFETFPGIKLKGE-DGKVNIV 68 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC--CCeEEEEEcCCHH-----Hhhhhhc----CcceeccCCceEeec-CCcCcHH
Confidence 4666554 477999999999999985 7999999987622 2233322 21 222221111110 1101122
Q ss_pred HHHH---HHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCccc
Q 043859 87 TIIS---VIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYV 163 (484)
Q Consensus 87 ~~~~---~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 163 (484)
..+. ...........++++++ +||+||+| +.+.+..+|+.+|||++.+..+....
T Consensus 69 ~~l~~~~~~~~~~~~~~~~~l~~~--~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~------------------- 126 (321)
T TIGR00661 69 KTLRNKEYSPKKAIRREINIIREY--NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR------------------- 126 (321)
T ss_pred HHHHhhccccHHHHHHHHHHHHhc--CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc-------------------
Confidence 2221 11122344556788888 99999999 56667889999999999776532100
Q ss_pred cCCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcc-cCccEEEEcChhhhcHHHHHHHhhccccCCCCCCCeE-
Q 043859 164 VQNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEI-PLSDGILVNTWEDLQPTALTALRDDKSLGRITKVPIY- 241 (484)
Q Consensus 164 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p~~~- 241 (484)
.|+. + ... .....+....+ .......+..+...... .|++.
T Consensus 127 -------~~~~-----------~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~p~~~~ 169 (321)
T TIGR00661 127 -------YPLK-----------T-DLI---VYPTMAALRIFNERCERFIVPDYPFPYTI---------------CPKIIK 169 (321)
T ss_pred -------CCcc-----------c-chh---HHHHHHHHHHhccccceEeeecCCCCCCC---------------Cccccc
Confidence 0000 0 000 00001111111 11222222222111100 11110
Q ss_pred -EeccccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccC
Q 043859 242 -TVGPIIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTA 320 (484)
Q Consensus 242 -~vGpl~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~ 320 (484)
.-+|.. ..+..+|... +.+.|+|.+|+.. ...++++++..+. +.+++.....
T Consensus 170 ~~~~~~~--------~~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~~---------- 222 (321)
T TIGR00661 170 NMEGPLI--------RYDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYEV---------- 222 (321)
T ss_pred cCCCccc--------chhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCCC----------
Confidence 001111 1122223222 2456888888743 3455677766543 2333221110
Q ss_pred CCCCCCCCccCCCchhHHHhhcCCceEecCCcc--hhhhccCCCccccccccCchhHHHHHhcCCceeeccccc--ccch
Q 043859 321 GSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAP--QIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYS--EQRM 396 (484)
Q Consensus 321 ~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ip--q~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~--DQ~~ 396 (484)
....++ .|+.+..|.| ..+.|+.++ ++|||||.+|++|++++|+|++++|... ||..
T Consensus 223 --------~~~~~~---------~~v~~~~~~~~~~~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~ 283 (321)
T TIGR00661 223 --------AKNSYN---------ENVEIRRITTDNFKELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGN 283 (321)
T ss_pred --------CccccC---------CCEEEEECChHHHHHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHH
Confidence 011222 2888889997 457889999 8999999999999999999999999855 8999
Q ss_pred hHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccc
Q 043859 397 NATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 397 na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
||..+ ++.|+|+.+.. ..+ ++.+++.++++|++
T Consensus 284 na~~l-~~~g~~~~l~~----~~~---~~~~~~~~~~~~~~ 316 (321)
T TIGR00661 284 NAVKL-EDLGCGIALEY----KEL---RLLEAILDIRNMKR 316 (321)
T ss_pred HHHHH-HHCCCEEEcCh----hhH---HHHHHHHhcccccc
Confidence 99999 69999999752 333 66778878888876
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.84 E-value=3.7e-18 Score=168.88 Aligned_cols=344 Identities=17% Similarity=0.124 Sum_probs=198.0
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
|||+|+..+..||...++.|+++|.++ ||+|++++.+... ....++..+ ++++.++....... .......
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~-g~ev~vv~~~~~~---~~~~~~~~g----~~~~~~~~~~~~~~--~~~~~l~ 71 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKR-GWEVLYLGTARGM---EARLVPKAG----IEFHFIPSGGLRRK--GSLANLK 71 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhC-CCEEEEEECCCch---hhhccccCC----CcEEEEeccCcCCC--ChHHHHH
Confidence 799999998889999999999999999 9999999986521 112222223 55555554222111 1111111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCc--hhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCccccC
Q 043859 88 IISVIMREIKPAFRSAISALKTTPTALIVDLF--GTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVVQ 165 (484)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~--~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 165 (484)
..... -.....+.+++++. +||+|++... ...+..++...++|+|......
T Consensus 72 ~~~~~-~~~~~~~~~~ik~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------------------ 124 (357)
T PRK00726 72 APFKL-LKGVLQARKILKRF--KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA------------------------ 124 (357)
T ss_pred HHHHH-HHHHHHHHHHHHhc--CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC------------------------
Confidence 11111 22334566777877 9999999853 3334457778899987532110
Q ss_pred CccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCCCeEEecc
Q 043859 166 NESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKVPIYTVGP 245 (484)
Q Consensus 166 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p~~~~vGp 245 (484)
.++ ...+... ..++.++..+...+ .. .+ ..+++++|+
T Consensus 125 -----~~~------------------~~~r~~~------~~~d~ii~~~~~~~-------~~------~~-~~~i~vi~n 161 (357)
T PRK00726 125 -----VPG------------------LANKLLA------RFAKKVATAFPGAF-------PE------FF-KPKAVVTGN 161 (357)
T ss_pred -----Ccc------------------HHHHHHH------HHhchheECchhhh-------hc------cC-CCCEEEECC
Confidence 000 0000111 12233332221111 00 01 245888986
Q ss_pred ccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCC--cEEEEEeCCCCCCCCCCcccCCCC
Q 043859 246 IIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQ--RFIWVVRLPNETTGDGSFFTAGSG 323 (484)
Q Consensus 246 l~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~ 323 (484)
.+....... .....-+...++..+|++..|+.. .......+.++++.+.. .++|.++...
T Consensus 162 ~v~~~~~~~--~~~~~~~~~~~~~~~i~~~gg~~~--~~~~~~~l~~a~~~~~~~~~~~~~~G~g~-------------- 223 (357)
T PRK00726 162 PVREEILAL--AAPPARLAGREGKPTLLVVGGSQG--ARVLNEAVPEALALLPEALQVIHQTGKGD-------------- 223 (357)
T ss_pred CCChHhhcc--cchhhhccCCCCCeEEEEECCcHh--HHHHHHHHHHHHHHhhhCcEEEEEcCCCc--------------
Confidence 654311100 011111111223456777666532 11222333366655433 3444442210
Q ss_pred CCCCCccCCCchhHHHhhc-CCceEecCCcc-hhhhccCCCccccccccCchhHHHHHhcCCceeeccc----ccccchh
Q 043859 324 AGDDDLSSLLPDGFLSRTL-DIGVVVPQWAP-QIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPL----YSEQRMN 397 (484)
Q Consensus 324 ~~~~~~~~~lp~~~~~~~~-~~~v~v~~~ip-q~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~----~~DQ~~n 397 (484)
. +.+.+... .-++.+.+|+. ..++|+.++ ++|+|+|.++++||+++|+|+|++|. .+||..|
T Consensus 224 ---------~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~ 291 (357)
T PRK00726 224 ---------L-EEVRAAYAAGINAEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLPHAADDHQTAN 291 (357)
T ss_pred ---------H-HHHHHHhhcCCcEEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHH
Confidence 0 23332222 11367778984 468999999 79999999999999999999999997 4689999
Q ss_pred HHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHH
Q 043859 398 ATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKEC 474 (484)
Q Consensus 398 a~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~ 474 (484)
+..+ .+.|.|+.+.. +.++++.|+++|.+++.|++ ++++..+-++. . .+..+..+.++.+.+.+
T Consensus 292 ~~~i-~~~~~g~~~~~----~~~~~~~l~~~i~~ll~~~~---~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 292 ARAL-VDAGAALLIPQ----SDLTPEKLAEKLLELLSDPE---RLEAMAEAARA----L-GKPDAAERLADLIEELA 355 (357)
T ss_pred HHHH-HHCCCEEEEEc----ccCCHHHHHHHHHHHHcCHH---HHHHHHHHHHh----c-CCcCHHHHHHHHHHHHh
Confidence 9999 68999999874 56789999999999999976 55444333322 2 33344444555544443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.79 E-value=1.1e-16 Score=158.07 Aligned_cols=316 Identities=18% Similarity=0.134 Sum_probs=185.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTI 88 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 88 (484)
||+|.+.+..||....+.|++.|.++ ||+|++++...... ....+.. ++++..++....... ........
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~-G~ev~v~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~ 70 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER-GAEVLFLGTKRGLE---ARLVPKA----GIPLHTIPVGGLRRK--GSLKKLKA 70 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhC-CCEEEEEECCCcch---hhccccc----CCceEEEEecCcCCC--ChHHHHHH
Confidence 68999999999999999999999999 99999998764211 1111112 255555554222111 11111111
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCeEEEeCCc--hhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCccccCC
Q 043859 89 ISVIMREIKPAFRSAISALKTTPTALIVDLF--GTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVVQN 166 (484)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~--~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 166 (484)
+... ......+.+++++. +||+|++... ...+..+|...++|++.... ..
T Consensus 71 ~~~~-~~~~~~~~~~i~~~--~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~-~~------------------------ 122 (350)
T cd03785 71 PFKL-LKGVLQARKILKKF--KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQ-NA------------------------ 122 (350)
T ss_pred HHHH-HHHHHHHHHHHHhc--CCCEEEECCCCcchHHHHHHHHhCCCEEEEcC-CC------------------------
Confidence 1111 22334567778888 9999998742 33345678889999875321 10
Q ss_pred ccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCCCeEEeccc
Q 043859 167 ESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKVPIYTVGPI 246 (484)
Q Consensus 167 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p~~~~vGpl 246 (484)
.++ ....+ ..+.++.++..+....+. + + ..++.++|..
T Consensus 123 ----~~~-------------------~~~~~-----~~~~~~~vi~~s~~~~~~-----------~--~-~~~~~~i~n~ 160 (350)
T cd03785 123 ----VPG-------------------LANRL-----LARFADRVALSFPETAKY-----------F--P-KDKAVVTGNP 160 (350)
T ss_pred ----Ccc-------------------HHHHH-----HHHhhCEEEEcchhhhhc-----------C--C-CCcEEEECCC
Confidence 000 00000 012244555443322211 0 0 1247788865
Q ss_pred cCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCH-HHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCC
Q 043859 247 IRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTY-EQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAG 325 (484)
Q Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 325 (484)
......... .. ...+...+++.+|++..|+...... +.+..++..+...+..+++.++..
T Consensus 161 v~~~~~~~~-~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g----------------- 221 (350)
T cd03785 161 VREEILALD-RE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG----------------- 221 (350)
T ss_pred CchHHhhhh-hh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc-----------------
Confidence 433110001 11 2222222345567776676532111 122233333432334455555221
Q ss_pred CCCccCCCchhHHHhhc--CCceEecCCc-chhhhccCCCccccccccCchhHHHHHhcCCceeeccc----ccccchhH
Q 043859 326 DDDLSSLLPDGFLSRTL--DIGVVVPQWA-PQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPL----YSEQRMNA 398 (484)
Q Consensus 326 ~~~~~~~lp~~~~~~~~--~~~v~v~~~i-pq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~----~~DQ~~na 398 (484)
.. +.+.+... ..|+.+.+|+ +..++|+.++ ++|+++|.+|+.||+++|+|+|++|. ..+|..|+
T Consensus 222 ---~~----~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~ 292 (350)
T cd03785 222 ---DL----EEVKKAYEELGVNYEVFPFIDDMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPYAADDHQTANA 292 (350)
T ss_pred ---cH----HHHHHHHhccCCCeEEeehhhhHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhH
Confidence 01 22222222 3588888998 4567999999 79999999999999999999999986 46789999
Q ss_pred HHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccc
Q 043859 399 TILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 399 ~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
..+ .+.|.|+.+.. ...+.+++.++|.+++.|++
T Consensus 293 ~~l-~~~g~g~~v~~----~~~~~~~l~~~i~~ll~~~~ 326 (350)
T cd03785 293 RAL-VKAGAAVLIPQ----EELTPERLAAALLELLSDPE 326 (350)
T ss_pred HHH-HhCCCEEEEec----CCCCHHHHHHHHHHHhcCHH
Confidence 998 58899999863 34689999999999998755
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.74 E-value=1.9e-15 Score=148.92 Aligned_cols=312 Identities=16% Similarity=0.138 Sum_probs=173.5
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
|||+|++.+..||+.....||++|.++ ||+|++++.+.... ....+..+ ++++.++....... . ......
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~-g~eV~vv~~~~~~~---~~~~~~~g----~~~~~i~~~~~~~~-~-~~~~l~ 70 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKR-GVEVLWLGTKRGLE---KRLVPKAG----IEFYFIPVGGLRRK-G-SFRLIK 70 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhC-CCEEEEEeCCCcch---hcccccCC----CceEEEeccCcCCC-C-hHHHHH
Confidence 689999999999999888999999999 99999998754211 11122223 55555554221111 1 011111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCch--hhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCccccC
Q 043859 88 IISVIMREIKPAFRSAISALKTTPTALIVDLFG--TESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVVQ 165 (484)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~--~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 165 (484)
..... ......+.+++++. +||+|++.... ..+..++..+++|++.... ..
T Consensus 71 ~~~~~-~~~~~~l~~~i~~~--~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~~----------------------- 123 (348)
T TIGR01133 71 TPLKL-LKAVFQARRILKKF--KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-NA----------------------- 123 (348)
T ss_pred HHHHH-HHHHHHHHHHHHhc--CCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-CC-----------------------
Confidence 11111 22334567778888 99999987533 2334568888999864211 00
Q ss_pred CccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCCCeEEecc
Q 043859 166 NESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKVPIYTVGP 245 (484)
Q Consensus 166 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p~~~~vGp 245 (484)
.+ .....+ . .+.++.+++.+....+. . ..+++|.
T Consensus 124 -----~~-------------------~~~~~~---~--~~~~d~ii~~~~~~~~~----------------~-~~~~i~n 157 (348)
T TIGR01133 124 -----VP-------------------GLTNKL---L--SRFAKKVLISFPGAKDH----------------F-EAVLVGN 157 (348)
T ss_pred -----Cc-------------------cHHHHH---H--HHHhCeeEECchhHhhc----------------C-CceEEcC
Confidence 00 000011 1 12344444433211110 1 2345553
Q ss_pred ccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhh---CCCcEEEEEeCCCCCCCCCCcccCCC
Q 043859 246 IIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLEL---SQQRFIWVVRLPNETTGDGSFFTAGS 322 (484)
Q Consensus 246 l~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~~~~~ 322 (484)
.+...... .+. ..+++.-.+++.+|.+..|+... ......+.++++. .+.++++.. +.
T Consensus 158 ~v~~~~~~-~~~-~~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~-g~-------------- 218 (348)
T TIGR01133 158 PVRQEIRS-LPV-PRERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQT-GK-------------- 218 (348)
T ss_pred CcCHHHhc-ccc-hhhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEEC-Cc--------------
Confidence 33211000 000 01122222234456555555432 2222223344433 344555433 11
Q ss_pred CCCCCCccCCCchhHHHhhcCCce-EecCCc--chhhhccCCCccccccccCchhHHHHHhcCCceeecccc---cccch
Q 043859 323 GAGDDDLSSLLPDGFLSRTLDIGV-VVPQWA--PQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLY---SEQRM 396 (484)
Q Consensus 323 ~~~~~~~~~~lp~~~~~~~~~~~v-~v~~~i--pq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~---~DQ~~ 396 (484)
+ .. +.+.......++ .+..|. +..++|+.++ ++|+++|.+++.||+++|+|+|++|.. .+|..
T Consensus 219 ---~--~~----~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~ 287 (348)
T TIGR01133 219 ---N--DL----EKVKNVYQELGIEAIVTFIDENMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYY 287 (348)
T ss_pred ---c--hH----HHHHHHHhhCCceEEecCcccCHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhh
Confidence 0 01 223332222221 122333 4567999999 799999988999999999999999863 47888
Q ss_pred hHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccc
Q 043859 397 NATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 397 na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
|+..+ ++.|.|..+.. ...++++|.++|.+++.|++
T Consensus 288 ~~~~i-~~~~~G~~~~~----~~~~~~~l~~~i~~ll~~~~ 323 (348)
T TIGR01133 288 NAKFL-EDLGAGLVIRQ----KELLPEKLLEALLKLLLDPA 323 (348)
T ss_pred HHHHH-HHCCCEEEEec----ccCCHHHHHHHHHHHHcCHH
Confidence 99888 68899988763 45689999999999998865
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.73 E-value=2.4e-16 Score=156.53 Aligned_cols=350 Identities=13% Similarity=0.070 Sum_probs=195.0
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
.||+|+..++.||++|. +|+++|+++ |++|+|++.... .+++.+++. .+++..++...+ . +...
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~-~~~~~~~g~gg~--~m~~~g~~~-----~~~~~~l~v~G~----~---~~l~ 69 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEH-YPNARFIGVAGP--RMAAEGCEV-----LYSMEELSVMGL----R---EVLG 69 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhc-CCCcEEEEEccH--HHHhCcCcc-----ccChHHhhhccH----H---HHHH
Confidence 48999999999999999 999999999 999999997741 222222221 233333332111 1 1222
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEEe-CCchhh--HHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCcccc
Q 043859 88 IISVIMREIKPAFRSAISALKTTPTALIV-DLFGTE--SLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVV 164 (484)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~VI~-D~~~~~--~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 164 (484)
.+.. ........++++++. +||+||. |+-.+. ...+|+.+|||++.+.+ +. ..
T Consensus 70 ~~~~-~~~~~~~~~~~l~~~--kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~-P~-----------~w--------- 125 (385)
T TIGR00215 70 RLGR-LLKIRKEVVQLAKQA--KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS-PQ-----------VW--------- 125 (385)
T ss_pred HHHH-HHHHHHHHHHHHHhc--CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC-Cc-----------Hh---------
Confidence 2222 223344677778888 9999995 542322 22388899999887542 10 00
Q ss_pred CCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCCCeEEec
Q 043859 165 QNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKVPIYTVG 244 (484)
Q Consensus 165 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p~~~~vG 244 (484)
. +..+ ..+.+. +..+.++. +++ .+... +... -.+..+||
T Consensus 126 --------a-------------w~~~--~~r~l~------~~~d~v~~-~~~-~e~~~---~~~~-------g~~~~~vG 164 (385)
T TIGR00215 126 --------A-------------WRKW--RAKKIE------KATDFLLA-ILP-FEKAF---YQKK-------NVPCRFVG 164 (385)
T ss_pred --------h-------------cCcc--hHHHHH------HHHhHhhc-cCC-CcHHH---HHhc-------CCCEEEEC
Confidence 0 0000 000000 11222222 111 12111 1110 12467899
Q ss_pred cccCCCCCC--CCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhC-----CCcEEEEEeCCCCCCCCCCc
Q 043859 245 PIIRRLGPA--GSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELS-----QQRFIWVVRLPNETTGDGSF 317 (484)
Q Consensus 245 pl~~~~~~~--~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~ 317 (484)
....+.... +...+..+-++-.+++++|.+..||....-......++++++.+ +.++++.......
T Consensus 165 nPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~------- 237 (385)
T TIGR00215 165 HPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKR------- 237 (385)
T ss_pred CchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchh-------
Confidence 444331110 11122222233233567888888887532223455566555432 3345444321100
Q ss_pred ccCCCCCCCCCccCCCchhHHHhhc-CCceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceeec----cccc
Q 043859 318 FTAGSGAGDDDLSSLLPDGFLSRTL-DIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVW----PLYS 392 (484)
Q Consensus 318 ~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~----P~~~ 392 (484)
...+ +.+.+... ...+.+..+ ...++|+.+| ++|+-+|..|+ |++++|+|+|++ |+..
T Consensus 238 ------------~~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~ 300 (385)
T TIGR00215 238 ------------RLQF-EQIKAEYGPDLQLHLIDG-DARKAMFAAD--AALLASGTAAL-EAALIKTPMVVGYRMKPLTF 300 (385)
T ss_pred ------------HHHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEEEcCCHHHH
Confidence 0000 11111111 112222222 3346899999 89999999887 999999999999 8632
Q ss_pred ---------ccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhccc----chHHHHHHHHHHHHHHHHhhhcC
Q 043859 393 ---------EQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDE----EGYEIRAKVKELQRSAQKAWTRE 459 (484)
Q Consensus 393 ---------DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~----~~~~~~~~a~~l~~~~~~a~~~~ 459 (484)
.|..|+..+ ...|+...+. ++.+|++.|.+.+.++|.|+ + ++++.++--..+++.+ .+
T Consensus 301 ~~~~~~~~~~~~~~~nil-~~~~~~pel~----q~~~~~~~l~~~~~~ll~~~~~~~~---~~~~~~~~~~~~~~~l-~~ 371 (385)
T TIGR00215 301 LIARRLVKTDYISLPNIL-ANRLLVPELL----QEECTPHPLAIALLLLLENGLKAYK---EMHRERQFFEELRQRI-YC 371 (385)
T ss_pred HHHHHHHcCCeeeccHHh-cCCccchhhc----CCCCCHHHHHHHHHHHhcCCcccHH---HHHHHHHHHHHHHHHh-cC
Confidence 388899998 4788887764 26799999999999999998 5 5555555555555556 66
Q ss_pred CCChHHHHHHHH
Q 043859 460 SGSSYSSLARLA 471 (484)
Q Consensus 460 ~g~~~~~~~~~~ 471 (484)
+|.+.+..+.++
T Consensus 372 ~~~~~~~a~~i~ 383 (385)
T TIGR00215 372 NADSERAAQAVL 383 (385)
T ss_pred CCHHHHHHHHHh
Confidence 666666655443
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.70 E-value=5.5e-15 Score=147.48 Aligned_cols=352 Identities=16% Similarity=0.175 Sum_probs=190.6
Q ss_pred CCCeEEEEcCC-CccChHHHHHHHHHHHhcCCCeEEEEecCCCc--h---hHHHH-HhhhccCCCc-eEEEecCCCCCCC
Q 043859 6 SKPHAVLLASP-GVGHVIPVLELGKRLVTLYNFQVTIFVVASQT--S---AAESK-ILQSAMSSKL-CHVIEIPAPDISG 77 (484)
Q Consensus 6 ~~~~il~~~~p-~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~--~---~~~~~-~~~~~~~~~~-~~~~~~p~~~~~~ 77 (484)
+.|||+|++.. +.||..+..+|+++|.++ ||+|++++..... + .+.+. ........+. +.+ .......
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~-g~~~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~---~~~~~~~ 78 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQK-GIKDVIVCDLFGESHPVITEITKYLYLKSYTIGKELYRL---FYYGVEK 78 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhc-CCCcEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHHHH---HHhccCc
Confidence 35689999987 569999999999999999 9997777654311 1 11110 0000000000 000 0000000
Q ss_pred CCCCCchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHH--HHHhCCCeEEEecccHHHHHHHHhhcccc
Q 043859 78 LVDPDAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAI--AEELQIPKYVYVGTNAWCVALFVYAPTLD 155 (484)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~--A~~lgIP~v~~~~~~~~~~~~~~~~p~~~ 155 (484)
. ..... +..........+.+++++. +||+||++.-.+....+ +..++||.+.+.+...
T Consensus 79 ~--~~~~~---~~~~~~~~~~~l~~~l~~~--~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~td~~------------- 138 (380)
T PRK13609 79 I--YDKKI---FSWYANFGRKRLKLLLQAE--KPDIVINTFPIIAVPELKKQTGISIPTYNVLTDFC------------- 138 (380)
T ss_pred c--cchHH---HHHHHHHHHHHHHHHHHHh--CcCEEEEcChHHHHHHHHHhcCCCCCeEEEeCCCC-------------
Confidence 0 01111 1122333456788899988 99999998543333322 2345688764432100
Q ss_pred ccccCccccCCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCC
Q 043859 156 KTVQGQYVVQNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRI 235 (484)
Q Consensus 156 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp 235 (484)
.. . . -..+..+.+++.+-... .. +.+ .+.|
T Consensus 139 ------------------~~--------~-~---------------~~~~~ad~i~~~s~~~~-~~----l~~---~gi~ 168 (380)
T PRK13609 139 ------------------LH--------K-I---------------WVHREVDRYFVATDHVK-KV----LVD---IGVP 168 (380)
T ss_pred ------------------CC--------c-c---------------cccCCCCEEEECCHHHH-HH----HHH---cCCC
Confidence 00 0 0 00123455555443221 11 111 1101
Q ss_pred CCCCeEEec-cccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhC-CCcEEEEEeCCCCCCC
Q 043859 236 TKVPIYTVG-PIIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELS-QQRFIWVVRLPNETTG 313 (484)
Q Consensus 236 ~~p~~~~vG-pl~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~ 313 (484)
-.+++.+| |+...-..........+-++-.+++++|++..|+.... ..+..+++++... +.+++++.+...
T Consensus 169 -~~ki~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~---- 241 (380)
T PRK13609 169 -PEQVVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE---- 241 (380)
T ss_pred -hhHEEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH----
Confidence 12377777 43221110011112222222223456788877876532 2355667777543 456666552110
Q ss_pred CCCcccCCCCCCCCCccCCCchhHHHhhc--CCceEecCCcchh-hhccCCCccccccccCchhHHHHHhcCCceeec-c
Q 043859 314 DGSFFTAGSGAGDDDLSSLLPDGFLSRTL--DIGVVVPQWAPQI-DILSHPSVGGFLSHCGWNSTLESITNGVPMIVW-P 389 (484)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~v~v~~~ipq~-~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~-P 389 (484)
.+-+.+.+... ..++.+.+|+++. +++..++ ++|+.+|..|+.||+++|+|+|+. |
T Consensus 242 ------------------~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD--~~v~~~gg~t~~EA~a~g~PvI~~~~ 301 (380)
T PRK13609 242 ------------------ALKQSLEDLQETNPDALKVFGYVENIDELFRVTS--CMITKPGGITLSEAAALGVPVILYKP 301 (380)
T ss_pred ------------------HHHHHHHHHHhcCCCcEEEEechhhHHHHHHhcc--EEEeCCCchHHHHHHHhCCCEEECCC
Confidence 00012222221 2478888999874 7999999 799999988999999999999985 6
Q ss_pred cccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHH
Q 043859 390 LYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLAR 469 (484)
Q Consensus 390 ~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~ 469 (484)
..+.|..|+..+ ++.|+|+... +.+++.++|.+++.|++ .+++ |++.+++ . ....+..+.++.
T Consensus 302 ~~g~~~~n~~~~-~~~G~~~~~~--------~~~~l~~~i~~ll~~~~---~~~~---m~~~~~~-~-~~~~s~~~i~~~ 364 (380)
T PRK13609 302 VPGQEKENAMYF-ERKGAAVVIR--------DDEEVFAKTEALLQDDM---KLLQ---MKEAMKS-L-YLPEPADHIVDD 364 (380)
T ss_pred CCCcchHHHHHH-HhCCcEEEEC--------CHHHHHHHHHHHHCCHH---HHHH---HHHHHHH-h-CCCchHHHHHHH
Confidence 777788999888 6889887642 67899999999999865 3332 3333222 1 233455555555
Q ss_pred HHHHHh
Q 043859 470 LAKECG 475 (484)
Q Consensus 470 ~~~~~~ 475 (484)
+++.+.
T Consensus 365 i~~~~~ 370 (380)
T PRK13609 365 ILAENH 370 (380)
T ss_pred HHHhhh
Confidence 554443
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.67 E-value=7e-15 Score=139.31 Aligned_cols=255 Identities=17% Similarity=0.146 Sum_probs=151.6
Q ss_pred CccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHh
Q 043859 17 GVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREI 96 (484)
Q Consensus 17 ~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (484)
|.||+..+++||++|+++ ||+|+|++....... ...+...+ +.+..++.... ...-
T Consensus 13 G~GHv~Rcl~LA~~l~~~-g~~v~f~~~~~~~~~--~~~i~~~g----~~v~~~~~~~~-----------------~~~d 68 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQ-GAEVAFACKPLPGDL--IDLLLSAG----FPVYELPDESS-----------------RYDD 68 (279)
T ss_pred cccHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHH--HHHHHHcC----CeEEEecCCCc-----------------hhhh
Confidence 789999999999999999 999999999864322 13345555 66766664210 0112
Q ss_pred hHHHHHHHHhcCCCCeEEEeCCchhhHH--HHHHHhCCCeEEEecccHHHHHHHHhhccccccccCccccCCccccCCCC
Q 043859 97 KPAFRSAISALKTTPTALIVDLFGTESL--AIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVVQNESFNIPGC 174 (484)
Q Consensus 97 ~~~l~~~l~~~~~~pD~VI~D~~~~~~~--~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~ 174 (484)
...+.+++++. +||+||+|....... ...+..+.+++.+--...
T Consensus 69 ~~~~~~~l~~~--~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~-------------------------------- 114 (279)
T TIGR03590 69 ALELINLLEEE--KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLAD-------------------------------- 114 (279)
T ss_pred HHHHHHHHHhc--CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCC--------------------------------
Confidence 23466777777 999999997543332 233344555554321000
Q ss_pred CCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCC-C-eEEecc---ccCC
Q 043859 175 RPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKV-P-IYTVGP---IIRR 249 (484)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p-~-~~~vGp---l~~~ 249 (484)
.-..++.++-.+. ..+.. .+ .+. .| . .++.|| ++++
T Consensus 115 ----------------------------~~~~~D~vin~~~-~~~~~--~y-~~~-------~~~~~~~l~G~~Y~~lr~ 155 (279)
T TIGR03590 115 ----------------------------RPHDCDLLLDQNL-GADAS--DY-QGL-------VPANCRLLLGPSYALLRE 155 (279)
T ss_pred ----------------------------CCcCCCEEEeCCC-CcCHh--Hh-ccc-------CcCCCeEEecchHHhhhH
Confidence 0001222222111 11110 00 000 12 2 677787 4443
Q ss_pred CCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhC--CCcEEEEEeCCCCCCCCCCcccCCCCCCCC
Q 043859 250 LGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELS--QQRFIWVVRLPNETTGDGSFFTAGSGAGDD 327 (484)
Q Consensus 250 ~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (484)
+-. .........++.+.|+|++|.... .+....++++++.. +.++.++++...
T Consensus 156 eF~-----~~~~~~~~~~~~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~------------------ 210 (279)
T TIGR03590 156 EFY-----QLATANKRRKPLRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSN------------------ 210 (279)
T ss_pred HHH-----HhhHhhhcccccCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCC------------------
Confidence 110 000000011123578999995432 23456677777653 456667663321
Q ss_pred CccCCCchhHHHhhc-CCceEecCCcchh-hhccCCCccccccccCchhHHHHHhcCCceeecccccccchhHHH
Q 043859 328 DLSSLLPDGFLSRTL-DIGVVVPQWAPQI-DILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATI 400 (484)
Q Consensus 328 ~~~~~lp~~~~~~~~-~~~v~v~~~ipq~-~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~r 400 (484)
...+.+.+..+ ..|+.+..|+++. ++|+.++ ++||+|| +|+.|+++.|+|+|++|...+|..||..
T Consensus 211 ----~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aD--l~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 211 ----PNLDELKKFAKEYPNIILFIDVENMAELMNEAD--LAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred ----cCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCC--EEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 11133433332 3588898999986 7999999 8999999 9999999999999999999999999875
No 38
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.64 E-value=4.6e-14 Score=140.90 Aligned_cols=169 Identities=14% Similarity=0.195 Sum_probs=110.6
Q ss_pred CCCeEEEEecCCCCCCCHHHHHHHHHHH-hh-CCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhc-C
Q 043859 267 PSESVLYVSFGSGGTLTYEQITELAWGL-EL-SQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTL-D 343 (484)
Q Consensus 267 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~ 343 (484)
+++++|+++.|+.+. ...+..+++++ +. .+.+++++.+.. ..+-+.+.+... .
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~----------------------~~l~~~l~~~~~~~ 255 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS----------------------KELKRSLTAKFKSN 255 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC----------------------HHHHHHHHHHhccC
Confidence 345688888898752 13345555554 32 245665554211 001122322222 3
Q ss_pred CceEecCCcchh-hhccCCCccccccccCchhHHHHHhcCCceeec-ccccccchhHHHHHhhhcceEEeeecCCCCccC
Q 043859 344 IGVVVPQWAPQI-DILSHPSVGGFLSHCGWNSTLESITNGVPMIVW-PLYSEQRMNATILTEELGVAIRSKVLPSKGVVG 421 (484)
Q Consensus 344 ~~v~v~~~ipq~-~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~ 421 (484)
+++.+.+|+++. ++++.++ ++|+.+|..|+.||++.|+|+|+. |..++|..|+..+ ++.|+|+... +
T Consensus 256 ~~v~~~G~~~~~~~~~~~aD--l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~~--------~ 324 (391)
T PRK13608 256 ENVLILGYTKHMNEWMASSQ--LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIAD--------T 324 (391)
T ss_pred CCeEEEeccchHHHHHHhhh--EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEeC--------C
Confidence 478888999764 6999999 799988888999999999999998 7777778999998 7999998742 7
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhhhh
Q 043859 422 REEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGMMT 478 (484)
Q Consensus 422 ~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~ 478 (484)
.+++.++|.++++|++ .+ ++|++.+++. ....+..+.++.+++.+.+..
T Consensus 325 ~~~l~~~i~~ll~~~~---~~---~~m~~~~~~~--~~~~s~~~i~~~l~~l~~~~~ 373 (391)
T PRK13608 325 PEEAIKIVASLTNGNE---QL---TNMISTMEQD--KIKYATQTICRDLLDLIGHSS 373 (391)
T ss_pred HHHHHHHHHHHhcCHH---HH---HHHHHHHHHh--cCCCCHHHHHHHHHHHhhhhh
Confidence 8889999999998854 22 3344443332 233555556666665555443
No 39
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.63 E-value=4.1e-14 Score=130.55 Aligned_cols=334 Identities=16% Similarity=0.157 Sum_probs=199.7
Q ss_pred CCCeEEEEcC--CCccChHHHHHHHHHHHhcC-CCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCC-CCCC
Q 043859 6 SKPHAVLLAS--PGVGHVIPVLELGKRLVTLY-NFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISG-LVDP 81 (484)
Q Consensus 6 ~~~~il~~~~--p~~GHv~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~ 81 (484)
+.+||+|.+. .+.||+..++.+|..|++.. |.+|++++..+.. ..++....++++.+|.....+ .+..
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~--------~~F~~~~gVd~V~LPsl~k~~~G~~~ 79 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPA--------GGFPGPAGVDFVKLPSLIKGDNGEYG 79 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCcc--------CCCCCcccCceEecCceEecCCCcee
Confidence 3459999998 48999999999999999864 8999999988643 344444569999999632211 1111
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHH-HHH---Hh---CCCeEEEecccHHHHHHHHhhccc
Q 043859 82 DAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLA-IAE---EL---QIPKYVYVGTNAWCVALFVYAPTL 154 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~-~A~---~l---gIP~v~~~~~~~~~~~~~~~~p~~ 154 (484)
..+.-..+.++.+.-...+...++.+ +||++|+|.+-++... +.- ++ +=+++...
T Consensus 80 ~~d~~~~l~e~~~~Rs~lil~t~~~f--kPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~l---------------- 141 (400)
T COG4671 80 LVDLDGDLEETKKLRSQLILSTAETF--KPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGL---------------- 141 (400)
T ss_pred eeecCCCHHHHHHHHHHHHHHHHHhc--CCCEEEEeccccchhhhhhHHHHHHhhcCCcceeeh----------------
Confidence 11111113455555566788888999 9999999965553110 110 00 10000000
Q ss_pred cccccCccccCCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcc-cCccEEEEcChhhhcHHHHHHHhhccccC
Q 043859 155 DKTVQGQYVVQNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEI-PLSDGILVNTWEDLQPTALTALRDDKSLG 233 (484)
Q Consensus 155 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 233 (484)
....+.+......+ .-.. ..+.+ +..+.+++...+++.... .+|+
T Consensus 142 ----------------------r~i~D~p~~~~~~w--~~~~---~~~~I~r~yD~V~v~GdP~f~d~~-------~~~~ 187 (400)
T COG4671 142 ----------------------RSIRDIPQELEADW--RRAE---TVRLINRFYDLVLVYGDPDFYDPL-------TEFP 187 (400)
T ss_pred ----------------------Hhhhhchhhhccch--hhhH---HHHHHHHhheEEEEecCccccChh-------hcCC
Confidence 00001110000000 0001 11111 234456665555443221 1122
Q ss_pred CC-C-CCCeEEeccccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhh-CCCcEEEEEeCCCC
Q 043859 234 RI-T-KVPIYTVGPIIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLEL-SQQRFIWVVRLPNE 310 (484)
Q Consensus 234 rp-~-~p~~~~vGpl~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~~ 310 (484)
.+ . ..++.|+|.+... -+. .+....| . +++-.|+||-|-.. .-.+++...+.|... .+.+-.|.+-..
T Consensus 188 ~~~~i~~k~~ytG~vq~~-~~~--~~~p~~~--~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtG-- 258 (400)
T COG4671 188 FAPAIRAKMRYTGFVQRS-LPH--LPLPPHE--A-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTG-- 258 (400)
T ss_pred ccHhhhhheeEeEEeecc-CcC--CCCCCcC--C-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeC--
Confidence 11 0 1238999998332 110 0011111 1 34446888888643 234667776666644 444434543111
Q ss_pred CCCCCCcccCCCCCCCCCccCCCchhHHHhh-----cCCceEecCCcch-hhhccCCCccccccccCchhHHHHHhcCCc
Q 043859 311 TTGDGSFFTAGSGAGDDDLSSLLPDGFLSRT-----LDIGVVVPQWAPQ-IDILSHPSVGGFLSHCGWNSTLESITNGVP 384 (484)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~~v~v~~~ipq-~~vL~~~~~~~~ItHgG~gs~~eal~~GvP 384 (484)
..+|+....+. +.+++.+..|-.+ .+++..++ ++|+-||+||+||-|++|||
T Consensus 259 --------------------P~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~--~vVSm~GYNTvCeILs~~k~ 316 (400)
T COG4671 259 --------------------PFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR--LVVSMGGYNTVCEILSFGKP 316 (400)
T ss_pred --------------------CCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--eeeecccchhhhHHHhCCCc
Confidence 22343332222 2368999999876 56899999 89999999999999999999
Q ss_pred eeecccc---cccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcc
Q 043859 385 MIVWPLY---SEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVD 435 (484)
Q Consensus 385 ~v~~P~~---~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~ 435 (484)
.+++|.. .+|-..|.|+ +++|+.-.+-+ +.+++..++++|...++-
T Consensus 317 aLivPr~~p~eEQliRA~Rl-~~LGL~dvL~p----e~lt~~~La~al~~~l~~ 365 (400)
T COG4671 317 ALIVPRAAPREEQLIRAQRL-EELGLVDVLLP----ENLTPQNLADALKAALAR 365 (400)
T ss_pred eEEeccCCCcHHHHHHHHHH-HhcCcceeeCc----ccCChHHHHHHHHhcccC
Confidence 9999974 4999999999 79999888765 789999999999999983
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.61 E-value=7.1e-14 Score=139.53 Aligned_cols=318 Identities=16% Similarity=0.144 Sum_probs=163.3
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHH
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVV 86 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (484)
.|||+|+..+..||+.|.. ++++|+++ ++++.+++... ..+++.+++ ..+.++.++...+ .+..
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~-~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~l~~~g~-------~~~~ 64 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKAR-APNLEFVGVGG--PRMQAAGCE-----SLFDMEELAVMGL-------VEVL 64 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhc-CCCcEEEEEcc--HHHHhCCCc-----cccCHHHhhhccH-------HHHH
Confidence 4799999999999999999 99999998 78888887653 122222211 1122232222110 1111
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCeEEEe-CCchhhH--HHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCccc
Q 043859 87 TIISVIMREIKPAFRSAISALKTTPTALIV-DLFGTES--LAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYV 163 (484)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~-D~~~~~~--~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 163 (484)
..+. ........++++++++ +||+|+. ++...+. ...|...|||++.+.....+.
T Consensus 65 ~~~~-~~~~~~~~~~~~l~~~--kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~~------------------- 122 (380)
T PRK00025 65 PRLP-RLLKIRRRLKRRLLAE--PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVWA------------------- 122 (380)
T ss_pred HHHH-HHHHHHHHHHHHHHHc--CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchhh-------------------
Confidence 2121 2233556778888888 9999886 3222223 345778899987643210000
Q ss_pred cCCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCCCeEEe
Q 043859 164 VQNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKVPIYTV 243 (484)
Q Consensus 164 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p~~~~v 243 (484)
.. ....... .+.++.+++.+-... . .+... --+++++
T Consensus 123 ------------------------~~-~~~~~~~------~~~~d~i~~~~~~~~--~---~~~~~-------g~~~~~~ 159 (380)
T PRK00025 123 ------------------------WR-QGRAFKI------AKATDHVLALFPFEA--A---FYDKL-------GVPVTFV 159 (380)
T ss_pred ------------------------cC-chHHHHH------HHHHhhheeCCccCH--H---HHHhc-------CCCeEEE
Confidence 00 0000000 122333443332211 1 11111 1137788
Q ss_pred ccccCCCCC-CCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhC-----CCcEEEEEeCCCCCCCCCCc
Q 043859 244 GPIIRRLGP-AGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELS-----QQRFIWVVRLPNETTGDGSF 317 (484)
Q Consensus 244 Gpl~~~~~~-~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~ 317 (484)
|........ ........+.+.-.+++++|++..||...........++++++.+ +.+++|+.+....
T Consensus 160 G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~------- 232 (380)
T PRK00025 160 GHPLADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKR------- 232 (380)
T ss_pred CcCHHHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhh-------
Confidence 843322111 011222222233223445677777765432122244555554332 3456665421110
Q ss_pred ccCCCCCCCCCccCCCchhHHHhhcCC---ceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceeeccccc--
Q 043859 318 FTAGSGAGDDDLSSLLPDGFLSRTLDI---GVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYS-- 392 (484)
Q Consensus 318 ~~~~~~~~~~~~~~~lp~~~~~~~~~~---~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~-- 392 (484)
-+.+.+..... ++.+.+ -.-.++++.++ ++|+.+|.+++ |++++|+|+|++|...
T Consensus 233 ----------------~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aD--l~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~ 292 (380)
T PRK00025 233 ----------------REQIEEALAEYAGLEVTLLD-GQKREAMAAAD--AALAASGTVTL-ELALLKVPMVVGYKVSPL 292 (380)
T ss_pred ----------------HHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCC--EEEECccHHHH-HHHHhCCCEEEEEccCHH
Confidence 01222222211 233322 12357899999 79999998887 9999999999995321
Q ss_pred ------ccchh-----HHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccc
Q 043859 393 ------EQRMN-----ATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 393 ------DQ~~n-----a~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
+|..| +..+ .+.|++..+. ....+++.|.+++.++++|++
T Consensus 293 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~----~~~~~~~~l~~~i~~ll~~~~ 343 (380)
T PRK00025 293 TFWIAKRLVKVPYVSLPNLL-AGRELVPELL----QEEATPEKLARALLPLLADGA 343 (380)
T ss_pred HHHHHHHHHcCCeeehHHHh-cCCCcchhhc----CCCCCHHHHHHHHHHHhcCHH
Confidence 23222 1222 2223232222 146789999999999999976
No 41
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.55 E-value=3.7e-12 Score=126.69 Aligned_cols=325 Identities=15% Similarity=0.098 Sum_probs=176.7
Q ss_pred CccChHHHHHHHHHHHh--cCCCeEE---EEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHH
Q 043859 17 GVGHVIPVLELGKRLVT--LYNFQVT---IFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISV 91 (484)
Q Consensus 17 ~~GHv~P~l~La~~L~~--r~Gh~Vt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 91 (484)
++|-=.=.++||++|++ . |++|. |+++..-. ++..++..+ .+..+|...+... ....+...+..
T Consensus 6 ghged~~a~ai~~~l~~~~~-~~~v~~~p~vG~~~~~---e~~~ip~~g-----~~~~~~sgg~~~~--~~~~~~~~~~~ 74 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSP-DLNLEALPLVGEGRAY---QNLGIPIIG-----PTKELPSGGFSYQ--SLRGLLRDLRA 74 (396)
T ss_pred CchHHHHHHHHHHHHHhhCC-CCCeEEeCcccCCHHH---hhCCCceeC-----CCCCCCCCCccCC--CHHHHHHHHHh
Confidence 44555567899999998 6 99999 99998432 223333222 3455554433221 11122222232
Q ss_pred -HHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecc--cHHHHHHHHhhccccccccCccccCCcc
Q 043859 92 -IMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGT--NAWCVALFVYAPTLDKTVQGQYVVQNES 168 (484)
Q Consensus 92 -~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 168 (484)
...... .-..+++++..+||+||.-.-+. ...+|..+|+|++++.+. +.+. ...+.. ......
T Consensus 75 gl~~~~~-~~~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~-----------~~~~~~-~~~~~~ 140 (396)
T TIGR03492 75 GLVGLTL-GQWRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYW-----------ESGPRR-SPSDEY 140 (396)
T ss_pred hHHHHHH-HHHHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceee-----------cCCCCC-ccchhh
Confidence 222222 23344555555899999765444 778899999999885542 1100 000000 000000
Q ss_pred ccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCCCeEEec-ccc
Q 043859 169 FNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKVPIYTVG-PII 247 (484)
Q Consensus 169 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p~~~~vG-pl~ 247 (484)
-.++|.. +..+.+..-..+.++.++.++- ... ..+.+. --++.+|| |+.
T Consensus 141 ~~~~G~~------------------~~p~e~n~l~~~~a~~v~~~~~--~t~---~~l~~~-------g~k~~~vGnPv~ 190 (396)
T TIGR03492 141 HRLEGSL------------------YLPWERWLMRSRRCLAVFVRDR--LTA---RDLRRQ-------GVRASYLGNPMM 190 (396)
T ss_pred hccCCCc------------------cCHHHHHHhhchhhCEEeCCCH--HHH---HHHHHC-------CCeEEEeCcCHH
Confidence 0112211 1111111111234445554331 111 222221 23599999 554
Q ss_pred CCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhC----CCcEEEEEeCCCCCCCCCCcccCCCC
Q 043859 248 RRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELS----QQRFIWVVRLPNETTGDGSFFTAGSG 323 (484)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~ 323 (484)
...... ... . + .+++++|.+-.||......+.+..++++++.+ +.+|++.+.+....
T Consensus 191 d~l~~~--~~~--~-l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~------------ 251 (396)
T TIGR03492 191 DGLEPP--ERK--P-L--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSL------------ 251 (396)
T ss_pred hcCccc--ccc--c-c--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCH------------
Confidence 432111 111 1 1 22346888889987433334455666666553 56777777332210
Q ss_pred CCCCCccCCCchhHHHhhc------------------CCceEecCCcch-hhhccCCCccccccccCchhHHHHHhcCCc
Q 043859 324 AGDDDLSSLLPDGFLSRTL------------------DIGVVVPQWAPQ-IDILSHPSVGGFLSHCGWNSTLESITNGVP 384 (484)
Q Consensus 324 ~~~~~~~~~lp~~~~~~~~------------------~~~v~v~~~ipq-~~vL~~~~~~~~ItHgG~gs~~eal~~GvP 384 (484)
+.+.+... .+++.+..+..+ .++++.++ ++|+-+|..| .|+.+.|+|
T Consensus 252 -----------~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~AD--lvI~rSGt~T-~E~a~lg~P 317 (396)
T TIGR03492 252 -----------EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWAD--LGIAMAGTAT-EQAVGLGKP 317 (396)
T ss_pred -----------HHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCC--EEEECcCHHH-HHHHHhCCC
Confidence 11111111 123555455543 57999999 8999999766 999999999
Q ss_pred eeecccccccchhHHHHHhhh----cceEEeeecCCCCccCHHHHHHHHHHHhcccc
Q 043859 385 MIVWPLYSEQRMNATILTEEL----GVAIRSKVLPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 385 ~v~~P~~~DQ~~na~rv~~~~----G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
+|++|.-..|. ||... ++. |.++.+. ..+.+.|.+++.+++.|++
T Consensus 318 ~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l~------~~~~~~l~~~l~~ll~d~~ 366 (396)
T TIGR03492 318 VIQLPGKGPQF-TYGFA-EAQSRLLGGSVFLA------SKNPEQAAQVVRQLLADPE 366 (396)
T ss_pred EEEEeCCCCHH-HHHHH-HhhHhhcCCEEecC------CCCHHHHHHHHHHHHcCHH
Confidence 99999877886 98765 453 6666653 3456999999999999865
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.50 E-value=1.8e-15 Score=132.53 Aligned_cols=87 Identities=28% Similarity=0.356 Sum_probs=73.5
Q ss_pred CceEecCCcc-hhhhccCCCccccccccCchhHHHHHhcCCceeeccccc----ccchhHHHHHhhhcceEEeeecCCCC
Q 043859 344 IGVVVPQWAP-QIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYS----EQRMNATILTEELGVAIRSKVLPSKG 418 (484)
Q Consensus 344 ~~v~v~~~ip-q~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~----DQ~~na~rv~~~~G~g~~l~~~~~~~ 418 (484)
.++.+.+|++ ..++++.++ ++|||||.||+.|++++|+|+|++|... ||..||..+ ++.|+|+.+.. .
T Consensus 55 ~~v~~~~~~~~m~~~m~~aD--lvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~----~ 127 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAAD--LVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDE----S 127 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHS--EEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSEC----C
T ss_pred CcEEEEechhhHHHHHHHcC--EEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCc----c
Confidence 4788889999 568999999 8999999999999999999999999988 999999999 69999999873 5
Q ss_pred ccCHHHHHHHHHHHhcccc
Q 043859 419 VVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 419 ~~~~~~l~~~i~~vl~~~~ 437 (484)
..+.+.|.++|.+++.++.
T Consensus 128 ~~~~~~L~~~i~~l~~~~~ 146 (167)
T PF04101_consen 128 ELNPEELAEAIEELLSDPE 146 (167)
T ss_dssp C-SCCCHHHHHHCHCCCHH
T ss_pred cCCHHHHHHHHHHHHcCcH
Confidence 6779999999999999864
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.46 E-value=3e-11 Score=120.45 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=69.1
Q ss_pred CceEecCCcchh-hhccCCCccccccccCchhHHHHHhcCCceeecccccccc-hhHHHHHhhhcceEEeeecCCCCccC
Q 043859 344 IGVVVPQWAPQI-DILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQR-MNATILTEELGVAIRSKVLPSKGVVG 421 (484)
Q Consensus 344 ~~v~v~~~ipq~-~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~-~na~rv~~~~G~g~~l~~~~~~~~~~ 421 (484)
.++.+.+|+++. +++..+| ++|+.+|-+|+.||+++|+|+|+.+....|. .|+..+ .+.|.|+.+ -+
T Consensus 265 ~~v~~~G~~~~~~~l~~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i-~~~g~g~~~--------~~ 333 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYV-VDNGFGAFS--------ES 333 (382)
T ss_pred CCeEEEeccccHHHHHHhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHH-HhCCceeec--------CC
Confidence 367788999864 6999999 7999999999999999999999998766665 788888 588999764 27
Q ss_pred HHHHHHHHHHHhcc
Q 043859 422 REEIKTMVRRILVD 435 (484)
Q Consensus 422 ~~~l~~~i~~vl~~ 435 (484)
+++|.++|.+++.|
T Consensus 334 ~~~la~~i~~ll~~ 347 (382)
T PLN02605 334 PKEIARIVAEWFGD 347 (382)
T ss_pred HHHHHHHHHHHHcC
Confidence 89999999999987
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.35 E-value=2e-12 Score=109.59 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=78.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHH
Q 043859 10 AVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTII 89 (484)
Q Consensus 10 il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 89 (484)
|+|++.|+.||++|+++||++|++| ||+|++++++.+.+. ++..+ ++|..++.. ... +........+
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r-Gh~V~~~~~~~~~~~-----v~~~G----l~~~~~~~~--~~~-~~~~~~~~~~ 67 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR-GHEVRLATPPDFRER-----VEAAG----LEFVPIPGD--SRL-PRSLEPLANL 67 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT-T-EEEEEETGGGHHH-----HHHTT-----EEEESSSC--GGG-GHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc-CCeEEEeecccceec-----ccccC----ceEEEecCC--cCc-Ccccchhhhh
Confidence 7899999999999999999999999 999999999987754 35556 888877764 011 1111111111
Q ss_pred HH------HHHHhhHHHHHHHHhc----C--CCCeEEEeCCchhhHHHHHHHhCCCeEEEeccc
Q 043859 90 SV------IMREIKPAFRSAISAL----K--TTPTALIVDLFGTESLAIAEELQIPKYVYVGTN 141 (484)
Q Consensus 90 ~~------~~~~~~~~l~~~l~~~----~--~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~~ 141 (484)
.. ........+.+...+. . ..+|+++.+.....+..+|++++||++.....+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 68 RRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred hhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 11 1122222222222222 1 268888889888888899999999999977654
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.24 E-value=5.5e-09 Score=107.11 Aligned_cols=138 Identities=15% Similarity=0.082 Sum_probs=85.5
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhC-CCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEec
Q 043859 271 VLYVSFGSGGTLTYEQITELAWGLELS-QQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVP 349 (484)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~ 349 (484)
.+++..|+.. ....+..++++++.. +.++++ ++. +..-+.+.+.....++.+.
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~i-vG~-----------------------G~~~~~l~~~~~~~~V~f~ 317 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAF-VGD-----------------------GPYREELEKMFAGTPTVFT 317 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEE-EeC-----------------------ChHHHHHHHHhccCCeEEe
Confidence 3445568754 223466777777765 445443 321 1111344444445678888
Q ss_pred CCcchh---hhccCCCccccccccC----chhHHHHHhcCCceeecccccccchhHHHHHhh---hcceEEeeecCCCCc
Q 043859 350 QWAPQI---DILSHPSVGGFLSHCG----WNSTLESITNGVPMIVWPLYSEQRMNATILTEE---LGVAIRSKVLPSKGV 419 (484)
Q Consensus 350 ~~ipq~---~vL~~~~~~~~ItHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~---~G~g~~l~~~~~~~~ 419 (484)
+|+++. ++|+.++ ++|.-.. -.++.||+++|+|+|+.... .....+ ++ -+.|..++ .
T Consensus 318 G~v~~~ev~~~~~~aD--v~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~------~ 384 (465)
T PLN02871 318 GMLQGDELSQAYASGD--VFVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYT------P 384 (465)
T ss_pred ccCCHHHHHHHHHHCC--EEEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeC------C
Confidence 999754 4888999 5664332 34788999999999987543 233344 44 56777764 3
Q ss_pred cCHHHHHHHHHHHhcccc-hHHHHHHHHH
Q 043859 420 VGREEIKTMVRRILVDEE-GYEIRAKVKE 447 (484)
Q Consensus 420 ~~~~~l~~~i~~vl~~~~-~~~~~~~a~~ 447 (484)
-+.+++.++|.++++|++ .+.+.+++++
T Consensus 385 ~d~~~la~~i~~ll~~~~~~~~~~~~a~~ 413 (465)
T PLN02871 385 GDVDDCVEKLETLLADPELRERMGAAARE 413 (465)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 478999999999998865 2234444443
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.23 E-value=1.2e-08 Score=100.59 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=62.8
Q ss_pred CceEecCCcchhh---hccCCCccccccccC----chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCC
Q 043859 344 IGVVVPQWAPQID---ILSHPSVGGFLSHCG----WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPS 416 (484)
Q Consensus 344 ~~v~v~~~ipq~~---vL~~~~~~~~ItHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 416 (484)
.++.+..|+++.+ +++.++ ++|+.+. .++++||+++|+|+|+.+..+ +...+ ++.+.|....
T Consensus 247 ~~v~~~g~~~~~~~~~~~~~~d--~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~~---- 315 (364)
T cd03814 247 PNVHFLGFLDGEELAAAYASAD--VFVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLVE---- 315 (364)
T ss_pred CcEEEEeccCHHHHHHHHHhCC--EEEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEcC----
Confidence 4788889988654 789999 6776554 478999999999999877543 45555 5668887763
Q ss_pred CCccCHHHHHHHHHHHhcccc
Q 043859 417 KGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~vl~~~~ 437 (484)
.-+.+++.++|.+++.|++
T Consensus 316 --~~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 316 --PGDAEAFAAALAALLADPE 334 (364)
T ss_pred --CCCHHHHHHHHHHHHcCHH
Confidence 4477889999999999865
No 47
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.19 E-value=2.6e-09 Score=96.19 Aligned_cols=282 Identities=18% Similarity=0.165 Sum_probs=172.5
Q ss_pred CeEEEEcCC----CccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCc
Q 043859 8 PHAVLLASP----GVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDA 83 (484)
Q Consensus 8 ~~il~~~~p----~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 83 (484)
|||+|.+-+ +-||+..++.||++|.++ |..++|++.....+.+.+ ..+. +.+ ... .+
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~-~~~~~fl~k~~~e~~~~~-~~~~------f~~--------~~~--~~- 61 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKR-GFACLFLTKQDIEAIIHK-VYEG------FKV--------LEG--RG- 61 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhc-CceEEEecccchhhhhhh-hhhh------ccc--------eee--ec-
Confidence 789998875 679999999999999999 999999999864432111 0000 100 000 00
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHH---HHHHHhCCCeEEEecccHHHHHHHHhhccccccccC
Q 043859 84 AVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESL---AIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQG 160 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~---~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 160 (484)
. ..+++. ++|+||.|.....+- .+..+++.+.+.+-.-....+-
T Consensus 62 -~----------------n~ik~~--k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~-------------- 108 (318)
T COG3980 62 -N----------------NLIKEE--KFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFK-------------- 108 (318)
T ss_pred -c----------------cccccc--cCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchh--------------
Confidence 0 045556 999999997665443 4777899998876532210000
Q ss_pred ccccCCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCCC-
Q 043859 161 QYVVQNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKVP- 239 (484)
Q Consensus 161 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p~- 239 (484)
. .....+.... + +....+ .|+
T Consensus 109 ----------------------------d----~d~ivN~~~~---a-----~~~y~~------------------v~~k 130 (318)
T COG3980 109 ----------------------------D----NDLIVNAILN---A-----NDYYGL------------------VPNK 130 (318)
T ss_pred ----------------------------h----hHhhhhhhhc---c-----hhhccc------------------cCcc
Confidence 0 0000000000 0 000000 222
Q ss_pred -eEEeccccCCCCC--CCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCC
Q 043859 240 -IYTVGPIIRRLGP--AGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGS 316 (484)
Q Consensus 240 -~~~vGpl~~~~~~--~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~ 316 (484)
.++.||=+....+ ....++. +.+ ++.-|+|++|- +.+.+..-.++..++..++.+-.+++ ..
T Consensus 131 ~~~~lGp~y~~lr~eF~~~r~~~---~~r--~~r~ilI~lGG--sDpk~lt~kvl~~L~~~~~nl~iV~g-s~------- 195 (318)
T COG3980 131 TRYYLGPGYAPLRPEFYALREEN---TER--PKRDILITLGG--SDPKNLTLKVLAELEQKNVNLHIVVG-SS------- 195 (318)
T ss_pred eEEEecCCceeccHHHHHhHHHH---hhc--chheEEEEccC--CChhhhHHHHHHHhhccCeeEEEEec-CC-------
Confidence 4666664432110 0011111 111 23359999994 23445677788888776655444442 11
Q ss_pred cccCCCCCCCCCccCCCchhHHHhhc-CCceEecCCcch-hhhccCCCccccccccCchhHHHHHhcCCceeeccccccc
Q 043859 317 FFTAGSGAGDDDLSSLLPDGFLSRTL-DIGVVVPQWAPQ-IDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQ 394 (484)
Q Consensus 317 ~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~~~ipq-~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ 394 (484)
.+.+..++.+.. .+|+........ ..+++.++ +.|+-||. |+.|++..|+|.+++|+...|
T Consensus 196 --------------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d--~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ 258 (318)
T COG3980 196 --------------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEAD--LAISAAGS-TLYEALLLGVPSLVLPLAENQ 258 (318)
T ss_pred --------------CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcc--hheeccch-HHHHHHHhcCCceEEeeeccH
Confidence 222234555443 456776555654 45999999 89999987 999999999999999999999
Q ss_pred chhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccc
Q 043859 395 RMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 395 ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
---|... +.+|+-..+. -.++.+....-+.++..|..
T Consensus 259 ~~~a~~f-~~lg~~~~l~-----~~l~~~~~~~~~~~i~~d~~ 295 (318)
T COG3980 259 IATAKEF-EALGIIKQLG-----YHLKDLAKDYEILQIQKDYA 295 (318)
T ss_pred HHHHHHH-HhcCchhhcc-----CCCchHHHHHHHHHhhhCHH
Confidence 9999998 6888887765 24777788888888888864
No 48
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.10 E-value=1.8e-07 Score=94.46 Aligned_cols=119 Identities=10% Similarity=0.082 Sum_probs=77.4
Q ss_pred CceEecCCcchh---hhccCCCccccccccCc------hhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeec
Q 043859 344 IGVVVPQWAPQI---DILSHPSVGGFLSHCGW------NSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVL 414 (484)
Q Consensus 344 ~~v~v~~~ipq~---~vL~~~~~~~~ItHgG~------gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~ 414 (484)
.++.+.+|+|+. ++|..+++.++.+..+. +.+.|++++|+|+|+....+. .....+ + +.|+.++
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~-- 356 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVE-- 356 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeC--
Confidence 478888999864 47889996544444332 236899999999999865331 122233 3 6787764
Q ss_pred CCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhhhhhc
Q 043859 415 PSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGMMTKR 480 (484)
Q Consensus 415 ~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~ 480 (484)
.-+.++++++|.++++|+. .+ .+|++.+++.+ .+.-+....++++++.+.++.++
T Consensus 357 ----~~d~~~la~~i~~l~~~~~---~~---~~~~~~a~~~~-~~~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 357 ----PESVEALVAAIAALARQAL---LR---PKLGTVAREYA-ERTLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred ----CCCHHHHHHHHHHHHhCHH---HH---HHHHHHHHHHH-HHHcCHHHHHHHHHHHHHHHhcC
Confidence 3478999999999998854 22 22333333333 34455666777888777776554
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.08 E-value=1.9e-07 Score=92.46 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=58.5
Q ss_pred CCceEecCCcchh---hhccCCCccccccccC---------chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEE
Q 043859 343 DIGVVVPQWAPQI---DILSHPSVGGFLSHCG---------WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIR 410 (484)
Q Consensus 343 ~~~v~v~~~ipq~---~vL~~~~~~~~ItHgG---------~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~ 410 (484)
..++.+..++++. +++..+++ +|.... -+++.||+++|+|+|+.+..+.+. .+ .+.+.|..
T Consensus 274 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~-~~~~~g~~ 346 (394)
T cd03794 274 LDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LV-EEAGAGLV 346 (394)
T ss_pred CCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hh-ccCCcceE
Confidence 4588888999765 47888994 553322 234799999999999988765443 22 24366766
Q ss_pred eeecCCCCccCHHHHHHHHHHHhcccc
Q 043859 411 SKVLPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 411 l~~~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
++ .-+.+++.++|.+++.|++
T Consensus 347 ~~------~~~~~~l~~~i~~~~~~~~ 367 (394)
T cd03794 347 VP------PGDPEALAAAILELLDDPE 367 (394)
T ss_pred eC------CCCHHHHHHHHHHHHhChH
Confidence 53 3388999999999998755
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.08 E-value=2.9e-07 Score=90.38 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=60.0
Q ss_pred CCceEecCCcchh---hhccCCCcccccc----ccCc-hhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeec
Q 043859 343 DIGVVVPQWAPQI---DILSHPSVGGFLS----HCGW-NSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVL 414 (484)
Q Consensus 343 ~~~v~v~~~ipq~---~vL~~~~~~~~It----HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~ 414 (484)
..++.+..|+++. +++..+++ +|+ ..|. .++.||+++|+|+|+.+. ..+...+ ++.+.|..+.
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~-- 312 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFP-- 312 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEEC--
Confidence 3588888999654 46899994 552 2333 479999999999998654 4455565 4555777764
Q ss_pred CCCCccCHHHHHHHHHHHhcccc
Q 043859 415 PSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 415 ~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
.-+.+++.+++.++++|+.
T Consensus 313 ----~~d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 313 ----PGDAEDLAAALERLIDDPD 331 (359)
T ss_pred ----CCCHHHHHHHHHHHHhChH
Confidence 3468999999999999765
No 51
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.07 E-value=4.6e-07 Score=88.62 Aligned_cols=319 Identities=13% Similarity=0.049 Sum_probs=160.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTI 88 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 88 (484)
||++++....|+......++++|.++ ||+|++++....... ..... ++++..++.... .......
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~------~~~~~~~ 65 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAA-GYEVHVVAPPGDELE----ELEAL----GVKVIPIPLDRR------GINPFKD 65 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhc-CCeeEEEecCCCccc----ccccC----CceEEecccccc------ccChHhH
Confidence 57788887889999999999999999 999999998865421 11222 255555553221 0011111
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhh--HHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCccccCC
Q 043859 89 ISVIMREIKPAFRSAISALKTTPTALIVDLFGTE--SLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVVQN 166 (484)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~--~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 166 (484)
+. ....+...+++. +||+|++...... +..++...+.|.++..........
T Consensus 66 ~~-----~~~~~~~~~~~~--~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------- 118 (359)
T cd03808 66 LK-----ALLRLYRLLRKE--RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF-------------------- 118 (359)
T ss_pred HH-----HHHHHHHHHHhc--CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh--------------------
Confidence 11 123456667777 9999998754332 233445466665554322110000
Q ss_pred ccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCCC-eEEecc
Q 043859 167 ESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKVP-IYTVGP 245 (484)
Q Consensus 167 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p~-~~~vGp 245 (484)
.. . ......+....+. ....++.++..+....+. +.+. ...+ ... +..++.
T Consensus 119 -------~~--------~---~~~~~~~~~~~~~--~~~~~d~ii~~s~~~~~~-----~~~~--~~~~-~~~~~~~~~~ 170 (359)
T cd03808 119 -------TS--------G---GLKRRLYLLLERL--ALRFTDKVIFQNEDDRDL-----ALKL--GIIK-KKKTVLIPGS 170 (359)
T ss_pred -------cc--------c---hhHHHHHHHHHHH--HHhhccEEEEcCHHHHHH-----HHHh--cCCC-cCceEEecCC
Confidence 00 0 0000011111111 123456666666443322 1111 0000 012 333332
Q ss_pred ccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCC-CHHHHHHHHHHHhh--CCCcEEEEEeCCCCCCCCCCcccCCC
Q 043859 246 IIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTL-TYEQITELAWGLEL--SQQRFIWVVRLPNETTGDGSFFTAGS 322 (484)
Q Consensus 246 l~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~-~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 322 (484)
............. .++++.+++..|+.... ..+.+.+++..+.. .+.++++.-.....
T Consensus 171 ~~~~~~~~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~------------ 231 (359)
T cd03808 171 GVDLDRFSPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEE------------ 231 (359)
T ss_pred CCChhhcCccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcc------------
Confidence 2221100000000 12334677777876322 22333333344432 23444433211110
Q ss_pred CCCCCCccCCCchh-HHHhhcCCceEecCCcch-hhhccCCCcccccccc----CchhHHHHHhcCCceeecccccccch
Q 043859 323 GAGDDDLSSLLPDG-FLSRTLDIGVVVPQWAPQ-IDILSHPSVGGFLSHC----GWNSTLESITNGVPMIVWPLYSEQRM 396 (484)
Q Consensus 323 ~~~~~~~~~~lp~~-~~~~~~~~~v~v~~~ipq-~~vL~~~~~~~~ItHg----G~gs~~eal~~GvP~v~~P~~~DQ~~ 396 (484)
...-.. ........++.+.++..+ .+++..++ ++|..+ --+++.||+++|+|+|+-+.. .
T Consensus 232 --------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad--i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~ 297 (359)
T cd03808 232 --------NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAAD--VFVLPSYREGLPRVLLEAMAMGRPVIATDVP----G 297 (359)
T ss_pred --------hhhHHHHHHhcCCcceEEEeeccccHHHHHHhcc--EEEecCcccCcchHHHHHHHcCCCEEEecCC----C
Confidence 000000 111112346777777544 46899999 466433 257899999999999986543 3
Q ss_pred hHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccc
Q 043859 397 NATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 397 na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
....+ ++.+.|..++ .-+.+++.++|.+++.|++
T Consensus 298 ~~~~i-~~~~~g~~~~------~~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 298 CREAV-IDGVNGFLVP------PGDAEALADAIERLIEDPE 331 (359)
T ss_pred chhhh-hcCcceEEEC------CCCHHHHHHHHHHHHhCHH
Confidence 44455 4566777653 3478999999999998865
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.06 E-value=2.7e-07 Score=91.57 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=57.9
Q ss_pred CceEecCCcch-hhhccCCCcccccc----ccCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCC
Q 043859 344 IGVVVPQWAPQ-IDILSHPSVGGFLS----HCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKG 418 (484)
Q Consensus 344 ~~v~v~~~ipq-~~vL~~~~~~~~It----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~ 418 (484)
+++.+.++.++ .+++..++ ++|. -|.-.++.||+++|+|+|+.. ....+..+ ++-..|..++
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d--~~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i-~~~~~G~~~~------ 319 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIAD--LFLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVV-KHGETGFLVD------ 319 (371)
T ss_pred ceEEEecCcccHHHHHHhcC--EEEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhh-cCCCceEEcC------
Confidence 46777787765 46888999 4552 233459999999999999854 34455555 4545676653
Q ss_pred ccCHHHHHHHHHHHhcccc
Q 043859 419 VVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 419 ~~~~~~l~~~i~~vl~~~~ 437 (484)
.-+.+++.+++.+++.|+.
T Consensus 320 ~~~~~~l~~~i~~l~~~~~ 338 (371)
T cd04962 320 VGDVEAMAEYALSLLEDDE 338 (371)
T ss_pred CCCHHHHHHHHHHHHhCHH
Confidence 3478999999999998754
No 53
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.05 E-value=1.9e-07 Score=94.65 Aligned_cols=73 Identities=23% Similarity=0.296 Sum_probs=56.2
Q ss_pred hhhccCCCcccccc----ccCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHH
Q 043859 355 IDILSHPSVGGFLS----HCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVR 430 (484)
Q Consensus 355 ~~vL~~~~~~~~It----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~ 430 (484)
.++++.+++ +|+. =+|..+++||+++|+|+|+-|..+++......+ .+.|+++... +++++.++|.
T Consensus 314 ~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~~--------d~~~La~~l~ 383 (425)
T PRK05749 314 GLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQVE--------DAEDLAKAVT 383 (425)
T ss_pred HHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEEC--------CHHHHHHHHH
Confidence 468889995 3442 134446999999999999999988888887776 4667665532 6899999999
Q ss_pred HHhcccc
Q 043859 431 RILVDEE 437 (484)
Q Consensus 431 ~vl~~~~ 437 (484)
++++|++
T Consensus 384 ~ll~~~~ 390 (425)
T PRK05749 384 YLLTDPD 390 (425)
T ss_pred HHhcCHH
Confidence 9999865
No 54
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.03 E-value=2.1e-07 Score=93.19 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=60.9
Q ss_pred CceEecCCcchhh---hccCCCccccccc----cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCC
Q 043859 344 IGVVVPQWAPQID---ILSHPSVGGFLSH----CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPS 416 (484)
Q Consensus 344 ~~v~v~~~ipq~~---vL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 416 (484)
+++.+.+|+|+.+ ++..++ ++++. |--.++.||+++|+|+|+.... .....+ ++.+.|...+
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~ad--i~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~~~~~g~~~~---- 351 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAAD--VFVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-VDGVTGLLVD---- 351 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCC--EEEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-cCCCCeEEeC----
Confidence 5788999999765 588999 56643 2235899999999999986543 344555 5667888764
Q ss_pred CCccCHHHHHHHHHHHhcccc
Q 043859 417 KGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~vl~~~~ 437 (484)
.-+.+++.++|.++++|++
T Consensus 352 --~~~~~~l~~~i~~l~~~~~ 370 (398)
T cd03800 352 --PRDPEALAAALRRLLTDPA 370 (398)
T ss_pred --CCCHHHHHHHHHHHHhCHH
Confidence 3478999999999998854
No 55
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.97 E-value=1.2e-06 Score=88.02 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=59.8
Q ss_pred CCceEecCCcchhh---hccCCCccccccc-cC-chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCC
Q 043859 343 DIGVVVPQWAPQID---ILSHPSVGGFLSH-CG-WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSK 417 (484)
Q Consensus 343 ~~~v~v~~~ipq~~---vL~~~~~~~~ItH-gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 417 (484)
.+++.+.+++|+.+ +|..+++-++-+. .| ..++.||+++|+|+|+. |.......+ ++-..|..++
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i-~~~~~G~lv~----- 349 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVI-TDGENGLLVD----- 349 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhc-ccCCceEEcC-----
Confidence 45788889998754 6788884232232 23 24899999999999985 444555565 4545676653
Q ss_pred CccCHHHHHHHHHHHhcccc
Q 043859 418 GVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 418 ~~~~~~~l~~~i~~vl~~~~ 437 (484)
.-+++++.++|.++++|++
T Consensus 350 -~~d~~~la~~i~~ll~~~~ 368 (396)
T cd03818 350 -FFDPDALAAAVIELLDDPA 368 (396)
T ss_pred -CCCHHHHHHHHHHHHhCHH
Confidence 3478999999999999865
No 56
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.97 E-value=8.8e-07 Score=87.32 Aligned_cols=80 Identities=15% Similarity=0.178 Sum_probs=58.2
Q ss_pred CceEecCCcchh---hhccCCCccccccc----cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCC
Q 043859 344 IGVVVPQWAPQI---DILSHPSVGGFLSH----CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPS 416 (484)
Q Consensus 344 ~~v~v~~~ipq~---~vL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 416 (484)
+++.+.+++|+. .++.++++ +|.. |...++.||+++|+|+|+... ...+..+ ++.+.|..++.
T Consensus 259 ~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~--- 328 (374)
T cd03817 259 DRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPP--- 328 (374)
T ss_pred CcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCC---
Confidence 578888999875 47888994 5532 334789999999999998653 3455555 56577777642
Q ss_pred CCccCHHHHHHHHHHHhcccc
Q 043859 417 KGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~vl~~~~ 437 (484)
-+. ++.+++.+++++++
T Consensus 329 ---~~~-~~~~~i~~l~~~~~ 345 (374)
T cd03817 329 ---GDE-ALAEALLRLLQDPE 345 (374)
T ss_pred ---CCH-HHHHHHHHHHhChH
Confidence 122 89999999998865
No 57
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.95 E-value=1.9e-06 Score=86.97 Aligned_cols=123 Identities=7% Similarity=0.021 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchH
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAV 85 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 85 (484)
+++||++++..-.|+-..+..+|+.|+++ ||+|++++....... ....... ++.++.++.... .. ......
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~-G~~V~ii~~~~~~~~--~~~~~~~----~v~~~~~~~~~~-~~-~~~~~~ 72 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKH-GWKVDLVGYLETPPH--DEILSNP----NITIHPLPPPPQ-RL-NKLPFL 72 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhc-CceEEEEEecCCCCC--HHHhcCC----CEEEEECCCCcc-cc-ccchHH
Confidence 56799999999888889999999999999 999999997643211 1111222 377776654220 00 111111
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCC-ch---h-hHHHHHHHhCCCeEEEec
Q 043859 86 VTIISVIMREIKPAFRSAISALKTTPTALIVDL-FG---T-ESLAIAEELQIPKYVYVG 139 (484)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~-~~---~-~~~~~A~~lgIP~v~~~~ 139 (484)
...+..........+..+++.. +||+|++.. .. . .+..++...++|+|..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~--~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h 129 (415)
T cd03816 73 LFAPLKVLWQFFSLLWLLYKLR--PADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWH 129 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcC
Confidence 1111112222223334444544 899999753 21 1 123356667999876543
No 58
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.94 E-value=2.1e-07 Score=92.38 Aligned_cols=319 Identities=12% Similarity=0.086 Sum_probs=163.1
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
|||++ -.+++.|+.=+..|.++|.++.+.++.++.+..-.. ....+.+.++....+. +.... + +.+.
T Consensus 1 ~~i~~-~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~-~~~~~~~~~~i~~~~~---~~~~~-~-----~~~~-- 67 (365)
T TIGR00236 1 LKVSI-VLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHRE-MLDQVLDLFHLPPDYD---LNIMS-P-----GQTL-- 67 (365)
T ss_pred CeEEE-EEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHH-HHHHHHHhcCCCCCee---eecCC-C-----CCCH--
Confidence 46665 457888888899999999875356777777664332 2344444454111111 11100 1 1111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEEeCC--c-hhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCcccc
Q 043859 88 IISVIMREIKPAFRSAISALKTTPTALIVDL--F-GTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVV 164 (484)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~--~-~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 164 (484)
......+...+.+++++. +||+|++-. . ..++..+|..+|||++.+.... ...
T Consensus 68 --~~~~~~~~~~l~~~l~~~--~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-----------~s~--------- 123 (365)
T TIGR00236 68 --GEITSNMLEGLEELLLEE--KPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL-----------RTG--------- 123 (365)
T ss_pred --HHHHHHHHHHHHHHHHHc--CCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC-----------CcC---------
Confidence 222333446778888889 999999753 2 2456789999999987543110 000
Q ss_pred CCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCC-CeEEe
Q 043859 165 QNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKV-PIYTV 243 (484)
Q Consensus 165 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p-~~~~v 243 (484)
+ ....++ ....+..... -++.++..+-. ....... .+. -+ .++++
T Consensus 124 --------~----~~~~~~-------~~~~r~~~~~-----~ad~~~~~s~~-~~~~l~~-------~G~--~~~~I~vi 169 (365)
T TIGR00236 124 --------D----RYSPMP-------EEINRQLTGH-----IADLHFAPTEQ-AKDNLLR-------ENV--KADSIFVT 169 (365)
T ss_pred --------C----CCCCCc-------cHHHHHHHHH-----HHHhccCCCHH-HHHHHHH-------cCC--CcccEEEe
Confidence 0 000000 0000111110 12223332221 1111111 111 12 27888
Q ss_pred ccccCC----CCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhC-----CCcEEEEEeCCCCCCCC
Q 043859 244 GPIIRR----LGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELS-----QQRFIWVVRLPNETTGD 314 (484)
Q Consensus 244 Gpl~~~----~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~ 314 (484)
|....+ ........++.+.+. .++.+|+++++-..... ..+..+++++..+ +.++++...+...
T Consensus 170 gn~~~d~~~~~~~~~~~~~~~~~~~--~~~~~vl~~~hr~~~~~-k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~---- 242 (365)
T TIGR00236 170 GNTVIDALLTNVEIAYSSPVLSEFG--EDKRYILLTLHRRENVG-EPLENIFKAIREIVEEFEDVQIVYPVHLNPV---- 242 (365)
T ss_pred CChHHHHHHHHHhhccchhHHHhcC--CCCCEEEEecCchhhhh-hHHHHHHHHHHHHHHHCCCCEEEEECCCChH----
Confidence 844321 000001112222222 12346777654321111 3366677776553 3455554321100
Q ss_pred CCcccCCCCCCCCCccCCCchhHHHhhc-CCceEecCCcch---hhhccCCCccccccccCchhHHHHHhcCCceeeccc
Q 043859 315 GSFFTAGSGAGDDDLSSLLPDGFLSRTL-DIGVVVPQWAPQ---IDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPL 390 (484)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~~~ipq---~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~ 390 (484)
.-..+.+... .+++.+.+.+++ ..+++.++ ++|+-.|.. +.||+++|+|+|.++.
T Consensus 243 ------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad--~vv~~Sg~~-~~EA~a~g~PvI~~~~ 301 (365)
T TIGR00236 243 ------------------VREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSH--LILTDSGGV-QEEAPSLGKPVLVLRD 301 (365)
T ss_pred ------------------HHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCC--EEEECChhH-HHHHHHcCCCEEECCC
Confidence 0011222222 246777776654 45778888 788877654 7999999999999976
Q ss_pred ccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccc
Q 043859 391 YSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 391 ~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
.++++. + .+.|.++.+. .++++|.+++.+++.|++
T Consensus 302 ~~~~~e----~-~~~g~~~lv~-------~d~~~i~~ai~~ll~~~~ 336 (365)
T TIGR00236 302 TTERPE----T-VEAGTNKLVG-------TDKENITKAAKRLLTDPD 336 (365)
T ss_pred CCCChH----H-HhcCceEEeC-------CCHHHHHHHHHHHHhChH
Confidence 565553 2 2457776542 378999999999998865
No 59
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.90 E-value=1.4e-06 Score=83.83 Aligned_cols=111 Identities=15% Similarity=0.086 Sum_probs=76.8
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
|||.|--. -.-|+.-+-.+.++|.++ ||+|.+.+-+... ...++..++ ++++.+.... .+...
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~-GheV~it~R~~~~---~~~LL~~yg----~~y~~iG~~g--------~~~~~ 63 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKR-GHEVLITARDKDE---TEELLDLYG----IDYIVIGKHG--------DSLYG 63 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhC-CCEEEEEEeccch---HHHHHHHcC----CCeEEEcCCC--------CCHHH
Confidence 45555433 334999999999999999 9999988877533 335667666 7766665422 12333
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEec
Q 043859 88 IISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVG 139 (484)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~ 139 (484)
.+...... ...+.+++++. +||++|+- ..+.+..+|.-+|+|+|.+.=
T Consensus 64 Kl~~~~~R-~~~l~~~~~~~--~pDv~is~-~s~~a~~va~~lgiP~I~f~D 111 (335)
T PF04007_consen 64 KLLESIER-QYKLLKLIKKF--KPDVAISF-GSPEAARVAFGLGIPSIVFND 111 (335)
T ss_pred HHHHHHHH-HHHHHHHHHhh--CCCEEEec-CcHHHHHHHHHhCCCeEEEec
Confidence 34443333 33456666777 99999976 467778899999999998864
No 60
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.90 E-value=1.3e-06 Score=85.62 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=61.7
Q ss_pred CCceEecCCcchh---hhccCCCcccccc----ccCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecC
Q 043859 343 DIGVVVPQWAPQI---DILSHPSVGGFLS----HCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLP 415 (484)
Q Consensus 343 ~~~v~v~~~ipq~---~vL~~~~~~~~It----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~ 415 (484)
..++.+.+++++. ++|..++ ++|. -|..+++.||+++|+|+|+.+. ......+ ++.+.|...+
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~~--- 324 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAAD--VFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLVP--- 324 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcC--EEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEeC---
Confidence 4578888999643 5788999 4553 2556799999999999998765 4455565 4567777764
Q ss_pred CCCccCHHHHHHHHHHHhcccc
Q 043859 416 SKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 416 ~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
..+.+++.++|.+++.|++
T Consensus 325 ---~~~~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 325 ---PGDPEALAEAILRLLDDPE 343 (374)
T ss_pred ---CCCHHHHHHHHHHHHcChH
Confidence 3468999999999999865
No 61
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.86 E-value=3e-07 Score=91.16 Aligned_cols=133 Identities=17% Similarity=0.104 Sum_probs=84.3
Q ss_pred CCeEEEEecCCCCCC-CHHHHHHHHHHHhhCCC-cEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHH---hhc
Q 043859 268 SESVLYVSFGSGGTL-TYEQITELAWGLELSQQ-RFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLS---RTL 342 (484)
Q Consensus 268 ~~~~v~vs~Gs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~---~~~ 342 (484)
++++|++++|..... ....+..++++++.+.. ++++....+.. .-+.+.+ +..
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~----------------------~~~~l~~~~~~~~ 254 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR----------------------TRPRIREAGLEFL 254 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC----------------------hHHHHHHHHHhhc
Confidence 455788888875433 34557788888866432 24444422211 0012222 121
Q ss_pred --CCceEecCCcchh---hhccCCCccccccccCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCC
Q 043859 343 --DIGVVVPQWAPQI---DILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSK 417 (484)
Q Consensus 343 --~~~v~v~~~ipq~---~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 417 (484)
.+++.+.+..++. .++..++ ++|+.+| |.+.|+++.|+|+|+++.. |. +..+ .+.|+++.+.
T Consensus 255 ~~~~~v~~~~~~~~~~~~~l~~~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~-~~~g~~~~~~----- 321 (363)
T cd03786 255 GHHPNVLLISPLGYLYFLLLLKNAD--LVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPET-VESGTNVLVG----- 321 (363)
T ss_pred cCCCCEEEECCcCHHHHHHHHHcCc--EEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchh-hheeeEEecC-----
Confidence 3577776655433 5678899 8999999 7888999999999998743 22 2233 2567776642
Q ss_pred CccCHHHHHHHHHHHhcccc
Q 043859 418 GVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 418 ~~~~~~~l~~~i~~vl~~~~ 437 (484)
-+.++|.++|.++++++.
T Consensus 322 --~~~~~i~~~i~~ll~~~~ 339 (363)
T cd03786 322 --TDPEAILAAIEKLLSDEF 339 (363)
T ss_pred --CCHHHHHHHHHHHhcCch
Confidence 258999999999999864
No 62
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.85 E-value=3.8e-06 Score=82.98 Aligned_cols=80 Identities=16% Similarity=0.121 Sum_probs=57.1
Q ss_pred ceEecCCcc-hh---hhccCCCccccccc----cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCC
Q 043859 345 GVVVPQWAP-QI---DILSHPSVGGFLSH----CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPS 416 (484)
Q Consensus 345 ~v~v~~~ip-q~---~vL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 416 (484)
++....|++ +. .+++.++ ++|.- |..+++.||+++|+|+|+.... .....+ ++.+.|..++
T Consensus 245 ~v~~~g~~~~~~~~~~~~~~ad--~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~~---- 313 (365)
T cd03825 245 PVHYLGSLNDDESLALIYSAAD--VFVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLAK---- 313 (365)
T ss_pred ceEecCCcCCHHHHHHHHHhCC--EEEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEeC----
Confidence 677778998 43 5788999 56664 3357999999999999986542 333344 3444666653
Q ss_pred CCccCHHHHHHHHHHHhcccc
Q 043859 417 KGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~vl~~~~ 437 (484)
..+.+++.+++.+++.|++
T Consensus 314 --~~~~~~~~~~l~~l~~~~~ 332 (365)
T cd03825 314 --PGDPEDLAEGIEWLLADPD 332 (365)
T ss_pred --CCCHHHHHHHHHHHHhCHH
Confidence 4478999999999998864
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.84 E-value=6e-06 Score=81.07 Aligned_cols=84 Identities=14% Similarity=0.044 Sum_probs=60.9
Q ss_pred CCceEecCCcchh---hhccCCCccccc--cccCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCC
Q 043859 343 DIGVVVPQWAPQI---DILSHPSVGGFL--SHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSK 417 (484)
Q Consensus 343 ~~~v~v~~~ipq~---~vL~~~~~~~~I--tHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 417 (484)
..++.+.+++++. .++..+++.++. +-|..+++.||+++|+|+|+-+.. .....+ ++.+.|...+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~-~~~~~g~~~~----- 327 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEII-TDGENGLLVP----- 327 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHh-cCCcceeEEC-----
Confidence 3588888999864 578888842222 225567899999999999986543 344455 4666676653
Q ss_pred CccCHHHHHHHHHHHhcccc
Q 043859 418 GVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 418 ~~~~~~~l~~~i~~vl~~~~ 437 (484)
.-+.+++.++|.++++++.
T Consensus 328 -~~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 328 -PGDPEALAEAILRLLADPW 346 (377)
T ss_pred -CCCHHHHHHHHHHHhcCcH
Confidence 4588999999999999865
No 64
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.82 E-value=4.2e-06 Score=84.12 Aligned_cols=115 Identities=14% Similarity=0.079 Sum_probs=71.0
Q ss_pred CceEecCCcchh---hhccCCCcccccc---ccCch-hHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCC
Q 043859 344 IGVVVPQWAPQI---DILSHPSVGGFLS---HCGWN-STLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPS 416 (484)
Q Consensus 344 ~~v~v~~~ipq~---~vL~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 416 (484)
+++.+.+|+|+. .+|+.+++ +|. +-|.| ++.||+++|+|+|+-+..+ ....+ ++ |.+...
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~----- 316 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLA----- 316 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cceeec-----
Confidence 468888999753 58888994 543 33444 9999999999999976543 23343 33 434332
Q ss_pred CCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhhhhhc
Q 043859 417 KGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGMMTKR 480 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~ 480 (484)
..+.+++.+++.+++.+.. -+ +.+...++..+ .+..|-...++++++-..++.++
T Consensus 317 --~~~~~~l~~~l~~~l~~~~---~~---~~~~~~~~~~~-~~~fs~~~~~~~~~~~y~~l~~~ 371 (398)
T cd03796 317 --EPDVESIVRKLEEAISILR---TG---KHDPWSFHNRV-KKMYSWEDVAKRTEKVYDRILQT 371 (398)
T ss_pred --CCCHHHHHHHHHHHHhChh---hh---hhHHHHHHHHH-HhhCCHHHHHHHHHHHHHHHhcC
Confidence 2278999999999998643 11 01222222223 44566666667766666655433
No 65
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.82 E-value=1.2e-05 Score=80.38 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=61.5
Q ss_pred CceEecCCcchh---hhccCCCccccccc---cC-chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCC
Q 043859 344 IGVVVPQWAPQI---DILSHPSVGGFLSH---CG-WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPS 416 (484)
Q Consensus 344 ~~v~v~~~ipq~---~vL~~~~~~~~ItH---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 416 (484)
+++.+.+++|+. .+|..+++ ++.. -| -.++.||+++|+|+|+.-. ......+ .+.+.|...+
T Consensus 280 ~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i-~~~~~g~~~~---- 348 (392)
T cd03805 280 DQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETV-VDGETGFLCE---- 348 (392)
T ss_pred ceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHh-ccCCceEEeC----
Confidence 588888999875 57888994 5432 12 3578999999999999743 3344445 4545676642
Q ss_pred CCccCHHHHHHHHHHHhcccc-hHHHHHHHHH
Q 043859 417 KGVVGREEIKTMVRRILVDEE-GYEIRAKVKE 447 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~ 447 (484)
. +.+++.++|.+++++++ .+.+++++++
T Consensus 349 --~-~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 349 --P-TPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred --C-CHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 2 78999999999999864 2334444443
No 66
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.77 E-value=6.2e-06 Score=81.18 Aligned_cols=84 Identities=18% Similarity=0.081 Sum_probs=59.8
Q ss_pred CCceEecCCcchh---hhccCCCcccccc---ccCc-hhHHHHHhcCCceeecccccccchhHHHHHhh-hcceEEeeec
Q 043859 343 DIGVVVPQWAPQI---DILSHPSVGGFLS---HCGW-NSTLESITNGVPMIVWPLYSEQRMNATILTEE-LGVAIRSKVL 414 (484)
Q Consensus 343 ~~~v~v~~~ipq~---~vL~~~~~~~~It---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~-~G~g~~l~~~ 414 (484)
..|+.+.+|+|+. .++..+++.++-+ +.|. .++.||+++|+|+|+....+.. ..+ ++ .+.|...+
T Consensus 243 ~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i-~~~~~~g~~~~-- 315 (357)
T cd03795 243 LDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYV-NLHGVTGLVVP-- 315 (357)
T ss_pred cceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHH-hhCCCceEEeC--
Confidence 4589999999974 5888899533333 2343 3799999999999996544443 333 23 46676653
Q ss_pred CCCCccCHHHHHHHHHHHhcccc
Q 043859 415 PSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 415 ~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
.-+.+++.++|.++++|++
T Consensus 316 ----~~d~~~~~~~i~~l~~~~~ 334 (357)
T cd03795 316 ----PGDPAALAEAIRRLLEDPE 334 (357)
T ss_pred ----CCCHHHHHHHHHHHHHCHH
Confidence 3488999999999999865
No 67
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.76 E-value=1.7e-05 Score=76.98 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=56.7
Q ss_pred CceEecCCcch-hhhccCCCcccccccc----CchhHHHHHhcCCceeecccccccchhHHHHHhhhc-ceEEeeecCCC
Q 043859 344 IGVVVPQWAPQ-IDILSHPSVGGFLSHC----GWNSTLESITNGVPMIVWPLYSEQRMNATILTEELG-VAIRSKVLPSK 417 (484)
Q Consensus 344 ~~v~v~~~ipq-~~vL~~~~~~~~ItHg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G-~g~~l~~~~~~ 417 (484)
.++.+..+... .+++..++ ++|.-. .-+++.||+++|+|+|+.+..+.+. .+. ..| .|..++
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad--~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~-~~~~~g~~~~----- 302 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKAS--IFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EII-EDGVNGLLVP----- 302 (348)
T ss_pred CeEEEcCCcchHHHHHHhCC--EEEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhh-ccCcceEEeC-----
Confidence 46667676443 46888999 455443 2468999999999999875544332 232 334 776653
Q ss_pred CccCHHHHHHHHHHHhcccc
Q 043859 418 GVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 418 ~~~~~~~l~~~i~~vl~~~~ 437 (484)
..+.+++.++|.+++.|++
T Consensus 303 -~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 303 -NGDVEALAEALLRLMEDEE 321 (348)
T ss_pred -CCCHHHHHHHHHHHHcCHH
Confidence 4478999999999999876
No 68
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.75 E-value=5.5e-07 Score=87.31 Aligned_cols=100 Identities=14% Similarity=0.115 Sum_probs=66.9
Q ss_pred hhhhccCCCccccccccCchhHHHHHhcCCceeeccc--ccccchhHHHHHh---hhcceEEe-e--------ecCCCCc
Q 043859 354 QIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPL--YSEQRMNATILTE---ELGVAIRS-K--------VLPSKGV 419 (484)
Q Consensus 354 q~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~--~~DQ~~na~rv~~---~~G~g~~l-~--------~~~~~~~ 419 (484)
-.+++..++ ++|+-+|..|+ |+...|+|||+ ++ ..-|+.||+++ . ..|+.-.+ + +.=.++.
T Consensus 229 ~~~~m~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~vvPEllQ~~ 303 (347)
T PRK14089 229 THKALLEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEPLHPELLQEF 303 (347)
T ss_pred HHHHHHhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccccCchhhccc
Confidence 357899999 89999999998 99999999999 54 35799999998 4 55555333 1 0001256
Q ss_pred cCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHH
Q 043859 420 VGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLA 468 (484)
Q Consensus 420 ~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~ 468 (484)
+|++.|.+++.+ + .+++.++..+.+++.. +. +++.+..+
T Consensus 304 ~t~~~la~~i~~-~-------~~~~~~~~~~~l~~~l-~~-~a~~~~A~ 342 (347)
T PRK14089 304 VTVENLLKAYKE-M-------DREKFFKKSKELREYL-KH-GSAKNVAK 342 (347)
T ss_pred CCHHHHHHHHHH-H-------HHHHHHHHHHHHHHHh-cC-CHHHHHHH
Confidence 889999999977 1 3444444444444434 33 44444433
No 69
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.74 E-value=5.9e-05 Score=75.94 Aligned_cols=91 Identities=11% Similarity=0.029 Sum_probs=63.0
Q ss_pred CceEecCCcchh---hhccCCCcccccc---ccC-chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCC
Q 043859 344 IGVVVPQWAPQI---DILSHPSVGGFLS---HCG-WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPS 416 (484)
Q Consensus 344 ~~v~v~~~ipq~---~vL~~~~~~~~It---HgG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 416 (484)
+++.+.++++.. ++|+.++ ++|. +.| -.++.||+++|+|+|+... ......+ ++-+.|..++
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad--~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~---- 351 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAAD--VVAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAV-ADGETGLLVD---- 351 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCC--EEEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhh-ccCCceEECC----
Confidence 478888999764 5799999 4552 223 3589999999999998654 3344455 4556777653
Q ss_pred CCccCHHHHHHHHHHHhcccc-hHHHHHHHHH
Q 043859 417 KGVVGREEIKTMVRRILVDEE-GYEIRAKVKE 447 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~ 447 (484)
.-+.++++++|.++++|+. .+.+++++++
T Consensus 352 --~~d~~~la~~i~~~l~~~~~~~~~~~~~~~ 381 (405)
T TIGR03449 352 --GHDPADWADALARLLDDPRTRIRMGAAAVE 381 (405)
T ss_pred --CCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3478999999999998754 2334444443
No 70
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.65 E-value=8.8e-06 Score=83.00 Aligned_cols=202 Identities=16% Similarity=0.127 Sum_probs=103.4
Q ss_pred CCeEEec-cccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHh--hC--CCcEEEEEeCCCCCC
Q 043859 238 VPIYTVG-PIIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLE--LS--QQRFIWVVRLPNETT 312 (484)
Q Consensus 238 p~~~~vG-pl~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~~~~ 312 (484)
-++.||| |+..........++..+-++-.+++++|-+-.||-..--...+..++++.+ .. +.+++......
T Consensus 381 v~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~---- 456 (608)
T PRK01021 381 LRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANP---- 456 (608)
T ss_pred CCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCch----
Confidence 4599999 887653211222333333333346679999999843222233455566665 33 33444432110
Q ss_pred CCCCcccCCCCCCCCCccCCCchhHHHhhcCCc---eEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceeecc
Q 043859 313 GDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIG---VVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWP 389 (484)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~---v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P 389 (484)
...+.+.+.....+ +.+..--...++++.|+ +.+.-.|- .++|+...|+|||++=
T Consensus 457 -------------------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD--~aLaaSGT-aTLEaAL~g~PmVV~Y 514 (608)
T PRK01021 457 -------------------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECD--CALAKCGT-IVLETALNQTPTIVTC 514 (608)
T ss_pred -------------------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcC--eeeecCCH-HHHHHHHhCCCEEEEE
Confidence 00112222222112 12211001257899999 66666665 6899999999999963
Q ss_pred -cccccchhHHHHHhh-----hc-----ceEEeee-cCC-CCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh
Q 043859 390 -LYSEQRMNATILTEE-----LG-----VAIRSKV-LPS-KGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAW 456 (484)
Q Consensus 390 -~~~DQ~~na~rv~~~-----~G-----~g~~l~~-~~~-~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~ 456 (484)
...=-+..|+++. + .| +|..+-+ +-. .+..+++.|.+++ ++|.|++ ++++.++=-+++++.+
T Consensus 515 K~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~---~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 515 QLRPFDTFLAKYIF-KIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQ---SKEKQKDACRDLYQAM 589 (608)
T ss_pred ecCHHHHHHHHHHH-hccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHH---HHHHHHHHHHHHHHHh
Confidence 2222234455553 2 11 1222211 000 1467899999996 8888865 4444444444444445
Q ss_pred hcCCCChHHHHHHHH
Q 043859 457 TRESGSSYSSLARLA 471 (484)
Q Consensus 457 ~~~~g~~~~~~~~~~ 471 (484)
.++...-+.+-.++
T Consensus 590 -g~~~~~~~~~~~~~ 603 (608)
T PRK01021 590 -NESASTMKECLSLI 603 (608)
T ss_pred -cCCCCCHHHHHHHH
Confidence 55555544444433
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.64 E-value=6.4e-05 Score=73.93 Aligned_cols=95 Identities=13% Similarity=-0.008 Sum_probs=60.7
Q ss_pred CceEecCCcch-hhhccCCCcccccc--ccC-chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCc
Q 043859 344 IGVVVPQWAPQ-IDILSHPSVGGFLS--HCG-WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGV 419 (484)
Q Consensus 344 ~~v~v~~~ipq-~~vL~~~~~~~~It--HgG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~ 419 (484)
+++.+.+|.+. ..+|..+++-++-+ +-| -++++||+++|+|+|+.-. ......+ .+.+.|..++ .
T Consensus 246 ~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i-~~~~~g~~~~------~ 314 (355)
T cd03819 246 DRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETV-RPGETGLLVP------P 314 (355)
T ss_pred ceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHH-hCCCceEEeC------C
Confidence 47888888654 46899999633323 223 3599999999999998643 3344454 4555777764 3
Q ss_pred cCHHHHHHHHHHHhc-ccc-hHHHHHHHHHHH
Q 043859 420 VGREEIKTMVRRILV-DEE-GYEIRAKVKELQ 449 (484)
Q Consensus 420 ~~~~~l~~~i~~vl~-~~~-~~~~~~~a~~l~ 449 (484)
-+.+++.++|..++. +++ .++++++|++..
T Consensus 315 ~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~ 346 (355)
T cd03819 315 GDAEALAQALDQILSLLPEGRAKMFAKARMCV 346 (355)
T ss_pred CCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 488999999976665 433 223444444433
No 72
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.64 E-value=3.7e-05 Score=75.65 Aligned_cols=82 Identities=15% Similarity=0.050 Sum_probs=57.8
Q ss_pred CCceEecCCcchh---hhccCCCccccccc--cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCC
Q 043859 343 DIGVVVPQWAPQI---DILSHPSVGGFLSH--CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSK 417 (484)
Q Consensus 343 ~~~v~v~~~ipq~---~vL~~~~~~~~ItH--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 417 (484)
.+++.+.+|+++. .++..+++-++-++ |-.+++.||+++|+|+|+.+. ......+ .+ +.|....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~----- 329 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVD----- 329 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeC-----
Confidence 3578888999854 46888995222222 224689999999999999653 3445555 45 7777653
Q ss_pred CccCHHHHHHHHHHHhcccc
Q 043859 418 GVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 418 ~~~~~~~l~~~i~~vl~~~~ 437 (484)
.+.+++.++|.+++.|++
T Consensus 330 --~~~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 330 --DDVDALAAALRRALELPQ 347 (375)
T ss_pred --CChHHHHHHHHHHHhCHH
Confidence 245999999999999854
No 73
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.64 E-value=3.5e-05 Score=75.72 Aligned_cols=83 Identities=17% Similarity=0.111 Sum_probs=58.9
Q ss_pred CceEecCCcchh---hhccCCCccccccc--------cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEee
Q 043859 344 IGVVVPQWAPQI---DILSHPSVGGFLSH--------CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSK 412 (484)
Q Consensus 344 ~~v~v~~~ipq~---~vL~~~~~~~~ItH--------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~ 412 (484)
+++.+.+++|+. .++.++++.++-+. |.-+++.||+++|+|+|+.+..+ ....+ ++...|..+.
T Consensus 236 ~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~~~~ 310 (355)
T cd03799 236 DRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGLLVP 310 (355)
T ss_pred CeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceEEeC
Confidence 578898999754 47788995222222 33568999999999999876432 22344 4544777763
Q ss_pred ecCCCCccCHHHHHHHHHHHhcccc
Q 043859 413 VLPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 413 ~~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
.-+.+++.++|.++++|+.
T Consensus 311 ------~~~~~~l~~~i~~~~~~~~ 329 (355)
T cd03799 311 ------PGDPEALADAIERLLDDPE 329 (355)
T ss_pred ------CCCHHHHHHHHHHHHhCHH
Confidence 3388999999999998865
No 74
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.62 E-value=1.4e-05 Score=79.07 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=62.5
Q ss_pred CCceEecCCcch-----hhhccCCCcccccc--c--cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeee
Q 043859 343 DIGVVVPQWAPQ-----IDILSHPSVGGFLS--H--CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKV 413 (484)
Q Consensus 343 ~~~v~v~~~ipq-----~~vL~~~~~~~~It--H--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~ 413 (484)
.+++.+.+|+++ .+.++.++ ++|. + |--.++.||+++|+|+|+.-. .......+ ++-..|..++
T Consensus 235 ~~~v~f~G~~~~~~~~~~~~~~~~d--~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv-~~~~~G~lv~- 307 (359)
T PRK09922 235 EQRIIWHGWQSQPWEVVQQKIKNVS--ALLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDII-KPGLNGELYT- 307 (359)
T ss_pred CCeEEEecccCCcHHHHHHHHhcCc--EEEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHc-cCCCceEEEC-
Confidence 357888888743 23456677 4443 2 335799999999999998751 12222344 4545676653
Q ss_pred cCCCCccCHHHHHHHHHHHhcccc---hHHHHHHHHHHHHH
Q 043859 414 LPSKGVVGREEIKTMVRRILVDEE---GYEIRAKVKELQRS 451 (484)
Q Consensus 414 ~~~~~~~~~~~l~~~i~~vl~~~~---~~~~~~~a~~l~~~ 451 (484)
.-+.+++.++|.++++|++ ...++++++++..+
T Consensus 308 -----~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (359)
T PRK09922 308 -----PGNIDEFVGKLNKVISGEVKYQHDAIPNSIERFYEV 343 (359)
T ss_pred -----CCCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhHH
Confidence 3489999999999999875 23344444444443
No 75
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.60 E-value=2e-05 Score=76.83 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=55.0
Q ss_pred CCceEecCCcchh---hhccCCCcccccc--ccCc-hhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCC
Q 043859 343 DIGVVVPQWAPQI---DILSHPSVGGFLS--HCGW-NSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPS 416 (484)
Q Consensus 343 ~~~v~v~~~ipq~---~vL~~~~~~~~It--HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 416 (484)
.+++.+.+++++. .+++.+++-++-+ +-|. .++.||+++|+|+|+... ......+ ++-..|..++
T Consensus 223 ~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i-~~~~~g~l~~---- 293 (335)
T cd03802 223 GPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVV-EDGVTGFLVD---- 293 (335)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhhe-eCCCcEEEeC----
Confidence 4589999999875 4688888533323 2343 489999999999998754 3343444 3433566653
Q ss_pred CCccCHHHHHHHHHHHhcc
Q 043859 417 KGVVGREEIKTMVRRILVD 435 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~vl~~ 435 (484)
. .+++.++|.+++..
T Consensus 294 -~---~~~l~~~l~~l~~~ 308 (335)
T cd03802 294 -S---VEELAAAVARADRL 308 (335)
T ss_pred -C---HHHHHHHHHHHhcc
Confidence 2 88999999988754
No 76
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.55 E-value=0.00012 Score=72.50 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=60.4
Q ss_pred CceEecCCcchh---hhccCCCccccccc----------cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEE
Q 043859 344 IGVVVPQWAPQI---DILSHPSVGGFLSH----------CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIR 410 (484)
Q Consensus 344 ~~v~v~~~ipq~---~vL~~~~~~~~ItH----------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~ 410 (484)
.++.+.+++|+. +++..++ ++|.. |--+++.||+++|+|+|+-+.. .++..+ ++.+.|..
T Consensus 245 ~~v~~~g~~~~~~l~~~~~~ad--~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~~ 317 (367)
T cd05844 245 GRVTFLGAQPHAEVRELMRRAR--IFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGLL 317 (367)
T ss_pred CeEEECCCCCHHHHHHHHHhCC--EEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeEE
Confidence 578888999864 4688999 45432 2356899999999999987654 355555 46677877
Q ss_pred eeecCCCCccCHHHHHHHHHHHhcccc
Q 043859 411 SKVLPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 411 l~~~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
++ .-+.+++.++|.++++|++
T Consensus 318 ~~------~~d~~~l~~~i~~l~~~~~ 338 (367)
T cd05844 318 VP------EGDVAALAAALGRLLADPD 338 (367)
T ss_pred EC------CCCHHHHHHHHHHHHcCHH
Confidence 63 3478999999999999865
No 77
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.54 E-value=0.00012 Score=74.48 Aligned_cols=81 Identities=17% Similarity=0.166 Sum_probs=56.7
Q ss_pred CceEecCCcchhh---hccCC----Ccccccccc---C-chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEee
Q 043859 344 IGVVVPQWAPQID---ILSHP----SVGGFLSHC---G-WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSK 412 (484)
Q Consensus 344 ~~v~v~~~ipq~~---vL~~~----~~~~~ItHg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~ 412 (484)
+++.+..++++.+ +|..+ + +||... | -.+++||+++|+|+|+.-. ......+ ++-..|+.++
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~D--v~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv-~~~~~G~lv~ 389 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRG--IFVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDII-ANCRNGLLVD 389 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCC--EEecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHh-cCCCcEEEeC
Confidence 4677777777654 46654 5 566543 3 4599999999999998754 3344454 4444676664
Q ss_pred ecCCCCccCHHHHHHHHHHHhcccc
Q 043859 413 VLPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 413 ~~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
.-+++++.++|.++++|+.
T Consensus 390 ------~~d~~~la~~i~~ll~~~~ 408 (439)
T TIGR02472 390 ------VLDLEAIASALEDALSDSS 408 (439)
T ss_pred ------CCCHHHHHHHHHHHHhCHH
Confidence 3478999999999999864
No 78
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.53 E-value=0.0002 Score=70.42 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=56.4
Q ss_pred CceEecC-Ccch---hhhccCCCccccc--cc----cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeee
Q 043859 344 IGVVVPQ-WAPQ---IDILSHPSVGGFL--SH----CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKV 413 (484)
Q Consensus 344 ~~v~v~~-~ipq---~~vL~~~~~~~~I--tH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~ 413 (484)
.++.+.. |+|+ ..+++.+++ +| ++ |..+++.||+++|+|+|+.+..+ ...+ .+.+.|..+.
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~- 317 (366)
T cd03822 247 DRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVP- 317 (366)
T ss_pred CcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEc-
Confidence 4676664 5875 358888994 44 22 34568999999999999977654 2333 3556676653
Q ss_pred cCCCCccCHHHHHHHHHHHhcccc
Q 043859 414 LPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 414 ~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
.-+.+++.++|.++++|++
T Consensus 318 -----~~d~~~~~~~l~~l~~~~~ 336 (366)
T cd03822 318 -----PGDPAALAEAIRRLLADPE 336 (366)
T ss_pred -----CCCHHHHHHHHHHHHcChH
Confidence 3468999999999999854
No 79
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.53 E-value=1.3e-05 Score=78.39 Aligned_cols=195 Identities=21% Similarity=0.191 Sum_probs=103.1
Q ss_pred CCeEEec-cccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhh-----CCCcEEEEEeCCCCC
Q 043859 238 VPIYTVG-PIIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLEL-----SQQRFIWVVRLPNET 311 (484)
Q Consensus 238 p~~~~vG-pl~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~ 311 (484)
-++.||| |+.....+........+.+ -.+++++|.+-.||-..--...+..++++.+. .+.++++.+....
T Consensus 153 ~~~~~VGHPl~d~~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~-- 229 (373)
T PF02684_consen 153 VPVTYVGHPLLDEVKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEV-- 229 (373)
T ss_pred CCeEEECCcchhhhccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHH--
Confidence 4599999 8776533322233333333 22356799999998422112223444555433 2445555442110
Q ss_pred CCCCCcccCCCCCCCCCccCCCchhHHHhhc--CCceEec-CCcchhhhccCCCccccccccCchhHHHHHhcCCceeec
Q 043859 312 TGDGSFFTAGSGAGDDDLSSLLPDGFLSRTL--DIGVVVP-QWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVW 388 (484)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~v~v~-~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~ 388 (484)
..+.+..... ..++.+. ..-.-.+++..++ +.+.-.|- .|+|+...|+|||++
T Consensus 230 ---------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad--~al~~SGT-aTLE~Al~g~P~Vv~ 285 (373)
T PF02684_consen 230 ---------------------HEELIEEILAEYPPDVSIVIIEGESYDAMAAAD--AALAASGT-ATLEAALLGVPMVVA 285 (373)
T ss_pred ---------------------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCc--chhhcCCH-HHHHHHHhCCCEEEE
Confidence 0011111111 1122221 1224456888999 45555554 789999999999987
Q ss_pred cc-ccccchhHHHHHhhhcceEEee-e-cC-------CCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhc
Q 043859 389 PL-YSEQRMNATILTEELGVAIRSK-V-LP-------SKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTR 458 (484)
Q Consensus 389 P~-~~DQ~~na~rv~~~~G~g~~l~-~-~~-------~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~ 458 (484)
=- ..=-+..|++++ +... +.+. . .+ ..+..+++.|.+++.++|.|++ .++..+...+..++.. .
T Consensus 286 Yk~~~lt~~iak~lv-k~~~-isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~---~~~~~~~~~~~~~~~~-~ 359 (373)
T PF02684_consen 286 YKVSPLTYFIAKRLV-KVKY-ISLPNIIAGREVVPELIQEDATPENIAAELLELLENPE---KRKKQKELFREIRQLL-G 359 (373)
T ss_pred EcCcHHHHHHHHHhh-cCCE-eechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHhh-h
Confidence 32 223344555553 2221 1110 0 01 1157899999999999999976 5555555555555545 5
Q ss_pred CCCChHH
Q 043859 459 ESGSSYS 465 (484)
Q Consensus 459 ~~g~~~~ 465 (484)
.+.++.+
T Consensus 360 ~~~~~~~ 366 (373)
T PF02684_consen 360 PGASSRA 366 (373)
T ss_pred hccCCHH
Confidence 5544443
No 80
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.52 E-value=5.6e-05 Score=73.13 Aligned_cols=330 Identities=19% Similarity=0.170 Sum_probs=179.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcC-CCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLY-NFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
-.+-+-.-+.|-++-.++|.++|.++. ++.|++-+..+.-....+ +.++ ..+...-+|. |.
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~---~~~~--~~v~h~YlP~---D~---------- 111 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAA---ALFG--DSVIHQYLPL---DL---------- 111 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHH---HHcC--CCeEEEecCc---Cc----------
Confidence 356666678999999999999999985 678877773333222111 2233 1122222222 10
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhH--HHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCccccC
Q 043859 88 IISVIMREIKPAFRSAISALKTTPTALIVDLFGTES--LAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVVQ 165 (484)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~--~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 165 (484)
...+.+.++.+ +||++|.-....|. ..-+++.|||.+.+..=
T Consensus 112 ---------~~~v~rFl~~~--~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR------------------------- 155 (419)
T COG1519 112 ---------PIAVRRFLRKW--RPKLLIIMETELWPNLINELKRRGIPLVLVNAR------------------------- 155 (419)
T ss_pred ---------hHHHHHHHHhc--CCCEEEEEeccccHHHHHHHHHcCCCEEEEeee-------------------------
Confidence 12455677789 99998855444444 45788899998886520
Q ss_pred CccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcc-cCccEEEEcChhhhcHHHHHHHhhccccCCCCCCCeEEec
Q 043859 166 NESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEI-PLSDGILVNTWEDLQPTALTALRDDKSLGRITKVPIYTVG 244 (484)
Q Consensus 166 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p~~~~vG 244 (484)
+..+....|...-...+.+ .+-+.++.-+-.+.+.- ..+| -+++..+|
T Consensus 156 --------------------LS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf--------~~LG---a~~v~v~G 204 (419)
T COG1519 156 --------------------LSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRF--------RSLG---AKPVVVTG 204 (419)
T ss_pred --------------------echhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHH--------HhcC---CcceEEec
Confidence 1112222233333333333 22334444333222211 1123 33477888
Q ss_pred cccCCCCCCC-Ccc---ccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhC--CCcEEEEEeCCCCCC------
Q 043859 245 PIIRRLGPAG-SWN---ELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELS--QQRFIWVVRLPNETT------ 312 (484)
Q Consensus 245 pl~~~~~~~~-~~~---~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~------ 312 (484)
-+-....+.+ ... .+...++.. + -+.|..+|+. -..+.+-....++.+. +...||+=+.+....
T Consensus 205 NlKfd~~~~~~~~~~~~~~r~~l~~~--r-~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~ 280 (419)
T COG1519 205 NLKFDIEPPPQLAAELAALRRQLGGH--R-PVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLL 280 (419)
T ss_pred ceeecCCCChhhHHHHHHHHHhcCCC--C-ceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHH
Confidence 7766533211 122 233334332 3 2555556633 2334455566666543 345556532222100
Q ss_pred -CCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCcc-hhhhccCCCcccc-----ccccCchhHHHHHhcCCce
Q 043859 313 -GDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWAP-QIDILSHPSVGGF-----LSHCGWNSTLESITNGVPM 385 (484)
Q Consensus 313 -~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ip-q~~vL~~~~~~~~-----ItHgG~gs~~eal~~GvP~ 385 (484)
..+.-+..=+ .... ...+.++.+.|-+- -..++.-+++ +| +-+||+| .+|.+++|+|+
T Consensus 281 ~~~gl~~~~rS-------~~~~------~~~~tdV~l~DtmGEL~l~y~~adi-AFVGGSlv~~GGHN-~LEpa~~~~pv 345 (419)
T COG1519 281 KRKGLSVTRRS-------QGDP------PFSDTDVLLGDTMGELGLLYGIADI-AFVGGSLVPIGGHN-PLEPAAFGTPV 345 (419)
T ss_pred HHcCCeEEeec-------CCCC------CCCCCcEEEEecHhHHHHHHhhccE-EEECCcccCCCCCC-hhhHHHcCCCE
Confidence 0000000000 0000 00122455555553 3345556665 44 4599997 68999999999
Q ss_pred eecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccc-hHHHHHHHHHHHHH
Q 043859 386 IVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEE-GYEIRAKVKELQRS 451 (484)
Q Consensus 386 v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~ 451 (484)
|.=|+..-|.+-++++ ++.|.|+.++ +++.+.+++..+++|++ -++|.+++.++-..
T Consensus 346 i~Gp~~~Nf~ei~~~l-~~~ga~~~v~--------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~ 403 (419)
T COG1519 346 IFGPYTFNFSDIAERL-LQAGAGLQVE--------DADLLAKAVELLLADEDKREAYGRAGLEFLAQ 403 (419)
T ss_pred EeCCccccHHHHHHHH-HhcCCeEEEC--------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 7999999985 37788888888888754 34455555554444
No 81
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.52 E-value=4.3e-05 Score=74.31 Aligned_cols=81 Identities=19% Similarity=0.144 Sum_probs=54.7
Q ss_pred CceEecCCcch-hhhccCCCccccccc----cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCC
Q 043859 344 IGVVVPQWAPQ-IDILSHPSVGGFLSH----CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKG 418 (484)
Q Consensus 344 ~~v~v~~~ipq-~~vL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~ 418 (484)
+++.+.++.+. .+++..+++ +|.- |.-+++.||+++|+|+|+.... .....+ ++.+.|...+
T Consensus 246 ~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~------ 312 (353)
T cd03811 246 DRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVP------ 312 (353)
T ss_pred ccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEEC------
Confidence 46777788765 468899994 5422 3356899999999999986443 555566 5667787764
Q ss_pred ccCHHHH---HHHHHHHhcccc
Q 043859 419 VVGREEI---KTMVRRILVDEE 437 (484)
Q Consensus 419 ~~~~~~l---~~~i~~vl~~~~ 437 (484)
.-+.+.+ .+++.+.+.+++
T Consensus 313 ~~~~~~~~~~~~~i~~~~~~~~ 334 (353)
T cd03811 313 VGDEAALAAAALALLDLLLDPE 334 (353)
T ss_pred CCCHHHHHHHHHHHHhccCChH
Confidence 3466666 555555555543
No 82
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.49 E-value=0.00014 Score=71.60 Aligned_cols=80 Identities=16% Similarity=0.069 Sum_probs=56.9
Q ss_pred CceEecCCcch-hhhccCCCccccccc----cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCC
Q 043859 344 IGVVVPQWAPQ-IDILSHPSVGGFLSH----CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKG 418 (484)
Q Consensus 344 ~~v~v~~~ipq-~~vL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~ 418 (484)
+++.+..+..+ .+++..+++ +|.- |--++++||+++|+|+|+-...+ ....+ ++ +.|... .
T Consensus 249 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~------~ 314 (358)
T cd03812 249 DKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLS------L 314 (358)
T ss_pred CcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEe------C
Confidence 46777777544 468899994 4432 44679999999999999865433 34444 45 555443 2
Q ss_pred ccCHHHHHHHHHHHhcccc
Q 043859 419 VVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 419 ~~~~~~l~~~i~~vl~~~~ 437 (484)
.-++++++++|.++++|++
T Consensus 315 ~~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 315 DESPEIWAEEILKLKSEDR 333 (358)
T ss_pred CCCHHHHHHHHHHHHhCcc
Confidence 3357999999999999976
No 83
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.45 E-value=0.00062 Score=66.54 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=55.8
Q ss_pred CceEecCCcch-hhhccCCCccccccccC----chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCC
Q 043859 344 IGVVVPQWAPQ-IDILSHPSVGGFLSHCG----WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKG 418 (484)
Q Consensus 344 ~~v~v~~~ipq-~~vL~~~~~~~~ItHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~ 418 (484)
.++.+.....+ .+++..++ ++|..+. .+++.||+++|+|+|+. |...+...+ ++ .|..++
T Consensus 251 ~~v~~~g~~~~~~~~~~~ad--i~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~-~~--~g~~~~------ 315 (365)
T cd03807 251 DKVILLGERSDVPALLNALD--VFVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELV-GD--TGFLVP------ 315 (365)
T ss_pred ceEEEccccccHHHHHHhCC--EEEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHh-hc--CCEEeC------
Confidence 35666555543 46889999 5665543 47999999999999985 444555555 45 555543
Q ss_pred ccCHHHHHHHHHHHhcccc
Q 043859 419 VVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 419 ~~~~~~l~~~i~~vl~~~~ 437 (484)
.-+.+++.++|.++++|++
T Consensus 316 ~~~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 316 PGDPEALAEAIEALLADPA 334 (365)
T ss_pred CCCHHHHHHHHHHHHhChH
Confidence 3368999999999999854
No 84
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.43 E-value=0.0002 Score=70.41 Aligned_cols=77 Identities=10% Similarity=0.086 Sum_probs=54.3
Q ss_pred CceEecCCcch-hhhccCCCccccccc----cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCC
Q 043859 344 IGVVVPQWAPQ-IDILSHPSVGGFLSH----CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKG 418 (484)
Q Consensus 344 ~~v~v~~~ipq-~~vL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~ 418 (484)
+++.+.++..+ .++|..+++ +|.- |.-+++.||+++|+|+|+. |...+...+ ++.|. .+.
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~~g~--~~~------ 309 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GDSGL--IVP------ 309 (360)
T ss_pred CcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cCCce--EeC------
Confidence 46777777754 568999995 4443 2256899999999999974 555566665 45343 332
Q ss_pred ccCHHHHHHHHHHHhcc
Q 043859 419 VVGREEIKTMVRRILVD 435 (484)
Q Consensus 419 ~~~~~~l~~~i~~vl~~ 435 (484)
.-+.+++.+++.+++.+
T Consensus 310 ~~~~~~~~~~i~~ll~~ 326 (360)
T cd04951 310 ISDPEALANKIDEILKM 326 (360)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 34888999999999954
No 85
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.42 E-value=3e-06 Score=82.84 Aligned_cols=300 Identities=15% Similarity=0.061 Sum_probs=143.8
Q ss_pred HHHHhcCCCeEEEEecCCC-chhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHhc
Q 043859 29 KRLVTLYNFQVTIFVVASQ-TSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKPAFRSAISAL 107 (484)
Q Consensus 29 ~~L~~r~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 107 (484)
|+|.++.++++.++.+..- .+.+...+.+.++ +.-..+... . +. . ........+...+.+.+++.
T Consensus 1 ~~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~----i~~~~~~l~---~--~~-~----~~~~~~~~~~~~~~~~~~~~ 66 (346)
T PF02350_consen 1 KALQKDPGFELILIVTGQHLDPEMGDTFFEGFG----IPKPDYLLD---S--DS-Q----SMAKSTGLAIIELADVLERE 66 (346)
T ss_dssp -HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT------SEEEE-----S--TT-S-----HHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCC----CCCCCcccc---c--cc-c----hHHHHHHHHHHHHHHHHHhc
Confidence 4676654788888887754 3444445555554 210111111 0 11 1 13344555667788899999
Q ss_pred CCCCeEEE--eCCch-hhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCccccCCccccCCCCCCCCcCCCCC
Q 043859 108 KTTPTALI--VDLFG-TESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQYVVQNESFNIPGCRPLRPEDVVD 184 (484)
Q Consensus 108 ~~~pD~VI--~D~~~-~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 184 (484)
+||+|| .|-+. .+++.+|..++||++-+... .-.
T Consensus 67 --~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG-lRs---------------------------------------- 103 (346)
T PF02350_consen 67 --KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG-LRS---------------------------------------- 103 (346)
T ss_dssp --T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES----------------------------------------------
T ss_pred --CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC-CCc----------------------------------------
Confidence 999988 45443 45568999999997765432 000
Q ss_pred ccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCCCeEEeccccCCC---CCCCCcccc--
Q 043859 185 PMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKVPIYTVGPIIRRL---GPAGSWNEL-- 259 (484)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p~~~~vGpl~~~~---~~~~~~~~~-- 259 (484)
........+...+..- ..-++..+..+-...+. ..+. +.+ -.+++.||.+..+. ......+..
T Consensus 104 --~d~~~g~~de~~R~~i-~~la~lhf~~t~~~~~~----L~~~----G~~-~~rI~~vG~~~~D~l~~~~~~~~~~~~~ 171 (346)
T PF02350_consen 104 --GDRTEGMPDEINRHAI-DKLAHLHFAPTEEARER----LLQE----GEP-PERIFVVGNPGIDALLQNKEEIEEKYKN 171 (346)
T ss_dssp --S-TTSSTTHHHHHHHH-HHH-SEEEESSHHHHHH----HHHT----T---GGGEEE---HHHHHHHHHHHTTCC-HHH
T ss_pred --cccCCCCchhhhhhhh-hhhhhhhccCCHHHHHH----HHhc----CCC-CCeEEEEChHHHHHHHHhHHHHhhhhhh
Confidence 0000001111111110 01133344444322211 1111 111 12388888554330 000011111
Q ss_pred ccccCCCCCCeEEEEecCCCCCCC-H---HHHHHHHHHHhhC-CCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCc
Q 043859 260 FDWLDKQPSESVLYVSFGSGGTLT-Y---EQITELAWGLELS-QQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLP 334 (484)
Q Consensus 260 ~~~l~~~~~~~~v~vs~Gs~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 334 (484)
...+.. .+++.++|++=...... . ..+..+++++... +.++||.+..... .-
T Consensus 172 ~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~----------------------~~ 228 (346)
T PF02350_consen 172 SGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR----------------------GS 228 (346)
T ss_dssp HHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH----------------------HH
T ss_pred HHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch----------------------HH
Confidence 122222 46679999985444444 3 3456667777665 7788988742211 00
Q ss_pred hhHHHhhcC-CceEecCCcc---hhhhccCCCccccccccCchhHHHHHhcCCceeecccccccchhHHHH-HhhhcceE
Q 043859 335 DGFLSRTLD-IGVVVPQWAP---QIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATIL-TEELGVAI 409 (484)
Q Consensus 335 ~~~~~~~~~-~~v~v~~~ip---q~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv-~~~~G~g~ 409 (484)
..+.+.... +|+.+..-++ ...+|++++ ++||..| |-.-||.++|||.|.+ .++..|- ....|..+
T Consensus 229 ~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~--~vvgdSs-GI~eEa~~lg~P~v~i------R~~geRqe~r~~~~nv 299 (346)
T PF02350_consen 229 DIIIEKLKKYDNVRLIEPLGYEEYLSLLKNAD--LVVGDSS-GIQEEAPSLGKPVVNI------RDSGERQEGRERGSNV 299 (346)
T ss_dssp HHHHHHHTT-TTEEEE----HHHHHHHHHHES--EEEESSH-HHHHHGGGGT--EEEC------SSS-S-HHHHHTTSEE
T ss_pred HHHHHHhcccCCEEEECCCCHHHHHHHHhcce--EEEEcCc-cHHHHHHHhCCeEEEe------cCCCCCHHHHhhcceE
Confidence 222332322 3777776664 457889999 8999999 4444999999999999 2223332 11335554
Q ss_pred EeeecCCCCccCHHHHHHHHHHHhccc
Q 043859 410 RSKVLPSKGVVGREEIKTMVRRILVDE 436 (484)
Q Consensus 410 ~l~~~~~~~~~~~~~l~~~i~~vl~~~ 436 (484)
.+ ..+.++|.+++.+++.+.
T Consensus 300 lv-------~~~~~~I~~ai~~~l~~~ 319 (346)
T PF02350_consen 300 LV-------GTDPEAIIQAIEKALSDK 319 (346)
T ss_dssp EE-------TSSHHHHHHHHHHHHH-H
T ss_pred Ee-------CCCHHHHHHHHHHHHhCh
Confidence 43 268999999999999873
No 86
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.40 E-value=0.00054 Score=69.08 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=51.2
Q ss_pred ecCCcchhhhccCCCccccccc----cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHH
Q 043859 348 VPQWAPQIDILSHPSVGGFLSH----CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGRE 423 (484)
Q Consensus 348 v~~~ipq~~vL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~ 423 (484)
+..+.+..+++..++ +||.- +=-++++||+++|+|+|+.-..+ + ..+ .+-+-|... -+.+
T Consensus 288 f~G~~~~~~~~~~~D--vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~--------~~~~ 351 (462)
T PLN02846 288 YPGRDHADPLFHDYK--VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY--------DDGK 351 (462)
T ss_pred ECCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec--------CCHH
Confidence 445666667899998 67766 33568999999999999985432 2 333 343444332 2678
Q ss_pred HHHHHHHHHhccc
Q 043859 424 EIKTMVRRILVDE 436 (484)
Q Consensus 424 ~l~~~i~~vl~~~ 436 (484)
++.+++.++|.++
T Consensus 352 ~~a~ai~~~l~~~ 364 (462)
T PLN02846 352 GFVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHHccC
Confidence 9999999999864
No 87
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.39 E-value=0.0018 Score=70.78 Aligned_cols=93 Identities=18% Similarity=0.183 Sum_probs=60.4
Q ss_pred CceEecCCcchhh---hccCCC--ccccccc---cC-chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeec
Q 043859 344 IGVVVPQWAPQID---ILSHPS--VGGFLSH---CG-WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVL 414 (484)
Q Consensus 344 ~~v~v~~~ipq~~---vL~~~~--~~~~ItH---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~ 414 (484)
++|.+..++++.+ ++..++ ..+||.- =| -.+++||+++|+|+|+-...+ ....+ +.-.-|+.++
T Consensus 548 g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLVd-- 620 (1050)
T TIGR02468 548 GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLVD-- 620 (1050)
T ss_pred CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEEC--
Confidence 4677778887654 555552 1156654 23 348999999999999986432 33333 3444577664
Q ss_pred CCCCccCHHHHHHHHHHHhcccc-hHHHHHHHHH
Q 043859 415 PSKGVVGREEIKTMVRRILVDEE-GYEIRAKVKE 447 (484)
Q Consensus 415 ~~~~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~ 447 (484)
.-++++|+++|.+++.|+. .+.+.+++++
T Consensus 621 ----P~D~eaLA~AL~~LL~Dpelr~~m~~~gr~ 650 (1050)
T TIGR02468 621 ----PHDQQAIADALLKLVADKQLWAECRQNGLK 650 (1050)
T ss_pred ----CCCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 3478999999999999865 2334444443
No 88
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.36 E-value=0.00037 Score=68.68 Aligned_cols=106 Identities=18% Similarity=0.200 Sum_probs=61.8
Q ss_pred CCceEecCCcchh---hhccCCCccccccccCc-----hhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeec
Q 043859 343 DIGVVVPQWAPQI---DILSHPSVGGFLSHCGW-----NSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVL 414 (484)
Q Consensus 343 ~~~v~v~~~ipq~---~vL~~~~~~~~ItHgG~-----gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~ 414 (484)
.+++.+.+++++. +++..+++ ++-++-. +++.||+++|+|+|+....+ +...+ +. .|....
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~-- 315 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFK-- 315 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEec--
Confidence 4588898999875 46777774 4443322 47999999999999875432 22223 33 233322
Q ss_pred CCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHH
Q 043859 415 PSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAK 472 (484)
Q Consensus 415 ~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~ 472 (484)
..+.+.++|.++++|++ .+ .++++.+++.. .+.-+-....+++++
T Consensus 316 ------~~~~l~~~i~~l~~~~~---~~---~~~~~~~~~~~-~~~fs~~~~~~~~~~ 360 (363)
T cd04955 316 ------VGDDLASLLEELEADPE---EV---SAMAKAARERI-REKYTWEKIADQYEE 360 (363)
T ss_pred ------CchHHHHHHHHHHhCHH---HH---HHHHHHHHHHH-HHhCCHHHHHHHHHH
Confidence 11129999999998854 22 22333333333 333444555555554
No 89
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.33 E-value=0.0003 Score=69.57 Aligned_cols=321 Identities=16% Similarity=0.101 Sum_probs=160.1
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchh-H--HHHHhhhccCCCceEEEecCCCCCCCCCCCCch
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSA-A--ESKILQSAMSSKLCHVIEIPAPDISGLVDPDAA 84 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 84 (484)
|||+++ .+++-.+.=+..+.++|.+..+.++.++.+..-.+. . .-..+...+ +... +.....-.-+...+
T Consensus 1 ~ki~~v-~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~ 73 (365)
T TIGR03568 1 KKICVV-TGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDG----FDID--EKIEILLDSDSNAG 73 (365)
T ss_pred CeEEEE-EecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcC----CCCC--CccccccCCCCCCC
Confidence 355544 466777777777888888632689888888754321 0 011222222 2110 11110000011111
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCC--c-hhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCc
Q 043859 85 VVTIISVIMREIKPAFRSAISALKTTPTALIVDL--F-GTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQ 161 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~--~-~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 161 (484)
+......+...+.+++++. +||+||+-. + +.+++.+|..+|||++-+....-+.
T Consensus 74 ----~~~~~~~~~~~~~~~~~~~--~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs~----------------- 130 (365)
T TIGR03568 74 ----MAKSMGLTIIGFSDAFERL--KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVTE----------------- 130 (365)
T ss_pred ----HHHHHHHHHHHHHHHHHHh--CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccCC-----------------
Confidence 2333444566788888888 999998543 3 3356689999999988665321100
Q ss_pred cccCCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCC-Ce
Q 043859 162 YVVQNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKV-PI 240 (484)
Q Consensus 162 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p-~~ 240 (484)
+ .-+...+...... ++..+.++.. -... ..+. +. -+ ++
T Consensus 131 -----------~---------------~~eE~~r~~i~~l-----a~l~f~~t~~-~~~~---L~~e----g~--~~~~i 169 (365)
T TIGR03568 131 -----------G---------------AIDESIRHAITKL-----SHLHFVATEE-YRQR---VIQM----GE--DPDRV 169 (365)
T ss_pred -----------C---------------CchHHHHHHHHHH-----HhhccCCCHH-HHHH---HHHc----CC--CCCcE
Confidence 0 0000011111111 1111111111 0000 1111 10 12 27
Q ss_pred EEeccccCCC---CCCCCccccccccCCCCCCeEEEEecCCCC---CCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCC
Q 043859 241 YTVGPIIRRL---GPAGSWNELFDWLDKQPSESVLYVSFGSGG---TLTYEQITELAWGLELSQQRFIWVVRLPNETTGD 314 (484)
Q Consensus 241 ~~vGpl~~~~---~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 314 (484)
+.+|....+. .......++.+.++-.++++.|+|++=... ....+.+..+++++...+.++++.+.....
T Consensus 170 ~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p---- 245 (365)
T TIGR03568 170 FNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADA---- 245 (365)
T ss_pred EEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCC----
Confidence 7777444320 000112233333322223457777775332 233567899999998777666665532211
Q ss_pred CCcccCCCCCCCCCccCCCchhHHHhhc-CCceEecCCc---chhhhccCCCccccccccCchhHHHHHhcCCceeeccc
Q 043859 315 GSFFTAGSGAGDDDLSSLLPDGFLSRTL-DIGVVVPQWA---PQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPL 390 (484)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~v~~~i---pq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~ 390 (484)
++ ..+-+.+.+-.. .+++.+.+-+ ....++++++ ++||-++.|- .||.+.|||.|.+-
T Consensus 246 -----------~~---~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~- 307 (365)
T TIGR03568 246 -----------GS---RIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG- 307 (365)
T ss_pred -----------Cc---hHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec-
Confidence 00 000011222111 3467776644 4567899999 8999886655 99999999999873
Q ss_pred ccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhc
Q 043859 391 YSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILV 434 (484)
Q Consensus 391 ~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~ 434 (484)
+-+ .- .+.|..+.+ -..++++|.+++.+++.
T Consensus 308 --~R~---e~--~~~g~nvl~------vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 308 --TRQ---KG--RLRADSVID------VDPDKEEIVKAIEKLLD 338 (365)
T ss_pred --CCc---hh--hhhcCeEEE------eCCCHHHHHHHHHHHhC
Confidence 211 11 123433321 23578999999999553
No 90
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.31 E-value=0.0011 Score=66.19 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=68.0
Q ss_pred ceEe-cCCcch---hhhccCCCccccccc----cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCC
Q 043859 345 GVVV-PQWAPQ---IDILSHPSVGGFLSH----CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPS 416 (484)
Q Consensus 345 ~v~v-~~~ipq---~~vL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 416 (484)
++.. ..+++. .+++..++ ++|.- |...++.||+++|+|+|+... ......+ ++-+.|..++..+.
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aD--v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~~ 333 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAE--VFVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDNS 333 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCC--EEEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCCC
Confidence 3443 356764 35788999 45532 223577999999999998653 3455555 46567877753111
Q ss_pred CCccCHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhh
Q 043859 417 KGVVGREEIKTMVRRILVDEE-GYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGM 476 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~ 476 (484)
+..-..+++.++|.+++.|++ .+.+.+++++. . .+..+-....+++++-.++
T Consensus 334 ~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~-------~-~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 334 DADGFQAELAKAINILLADPELAKKMGIAGRKR-------A-EEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred cccchHHHHHHHHHHHHhCHHHHHHHHHHHHHH-------H-HHhCCHHHHHHHHHHHHHh
Confidence 111223889999999998864 12233333332 2 2224445555565555443
No 91
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.30 E-value=1.9e-06 Score=70.24 Aligned_cols=115 Identities=20% Similarity=0.161 Sum_probs=76.2
Q ss_pred EEEEecCCCCCCCHHH-----HHHHHHHHhhCCC-cEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCC
Q 043859 271 VLYVSFGSGGTLTYEQ-----ITELAWGLELSQQ-RFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDI 344 (484)
Q Consensus 271 ~v~vs~Gs~~~~~~~~-----~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 344 (484)
.+||+-||... .++ -.+.+..|.+.|. +.|..++.... | .. +......+..
T Consensus 5 ~vFVTVGtT~F--d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~------~-------------~~--d~~~~~~k~~ 61 (170)
T KOG3349|consen 5 TVFVTVGTTSF--DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP------F-------------FG--DPIDLIRKNG 61 (170)
T ss_pred EEEEEeccccH--HHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc------C-------------CC--CHHHhhcccC
Confidence 79999998642 122 2445667777775 45566643311 0 11 1111111222
Q ss_pred --ceEecCCcch-hhhccCCCccccccccCchhHHHHHhcCCceeeccc----ccccchhHHHHHhhhcceEEe
Q 043859 345 --GVVVPQWAPQ-IDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPL----YSEQRMNATILTEELGVAIRS 411 (484)
Q Consensus 345 --~v~v~~~ipq-~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~rv~~~~G~g~~l 411 (484)
.+...+|-|- .+..+.++ ++|+|+|.||++|.|..|+|.|+++- -.+|-.-|..++ +.|.=..=
T Consensus 62 gl~id~y~f~psl~e~I~~Ad--lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~~C 132 (170)
T KOG3349|consen 62 GLTIDGYDFSPSLTEDIRSAD--LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLYYC 132 (170)
T ss_pred CeEEEEEecCccHHHHHhhcc--EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEEEe
Confidence 3445577786 56677788 89999999999999999999999994 458999999994 77765553
No 92
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.30 E-value=0.00088 Score=66.57 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=55.9
Q ss_pred ceEecCCcch-hhhccCCCccccc--cc--cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCc
Q 043859 345 GVVVPQWAPQ-IDILSHPSVGGFL--SH--CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGV 419 (484)
Q Consensus 345 ~v~v~~~ipq-~~vL~~~~~~~~I--tH--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~ 419 (484)
++.+..+..+ .++|..+++ +| ++ |--+++.||+++|+|+|+-.. ..+...+ ++-..|..++ .
T Consensus 256 ~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i-~~~~~g~~~~------~ 322 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELV-QHGVTGALVP------P 322 (374)
T ss_pred eEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHh-cCCCceEEeC------C
Confidence 4555555443 468899994 55 32 445699999999999999654 3344454 4545676653 3
Q ss_pred cCHHHHHHHHHHHhcccc
Q 043859 420 VGREEIKTMVRRILVDEE 437 (484)
Q Consensus 420 ~~~~~l~~~i~~vl~~~~ 437 (484)
-+.+++.++|.++++|+.
T Consensus 323 ~d~~~la~~i~~l~~~~~ 340 (374)
T TIGR03088 323 GDAVALARALQPYVSDPA 340 (374)
T ss_pred CCHHHHHHHHHHHHhCHH
Confidence 478899999999998754
No 93
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.30 E-value=0.00019 Score=68.77 Aligned_cols=202 Identities=14% Similarity=0.094 Sum_probs=105.1
Q ss_pred eEEec-cccCCCCCCCCccccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhh-----CCCcEEEEEeCCCCCCC
Q 043859 240 IYTVG-PIIRRLGPAGSWNELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLEL-----SQQRFIWVVRLPNETTG 313 (484)
Q Consensus 240 ~~~vG-pl~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~ 313 (484)
..||| |+....+-.+..+...+-+.-..+++++.+-.||-.+--...+..+.++.+. .+.+|+.-+....
T Consensus 158 ~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~---- 233 (381)
T COG0763 158 CTYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK---- 233 (381)
T ss_pred eEEeCChhhhhccccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH----
Confidence 89999 7766532122334444445444566799999998532222223334444433 2456665542211
Q ss_pred CCCcccCCCCCCCCCccCCCchhHHHhh-cCCceEecCCc-ch--hhhccCCCccccccccCchhHHHHHhcCCceeecc
Q 043859 314 DGSFFTAGSGAGDDDLSSLLPDGFLSRT-LDIGVVVPQWA-PQ--IDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWP 389 (484)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~v~v~~~i-pq--~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P 389 (484)
. ....+.. +.......-++ ++ .+++..|+ +.+.-+|- -++|+..+|+|||+.=
T Consensus 234 ----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD--~al~aSGT-~tLE~aL~g~P~Vv~Y 290 (381)
T COG0763 234 ----------------Y----RRIIEEALKWEVAGLSLILIDGEKRKAFAAAD--AALAASGT-ATLEAALAGTPMVVAY 290 (381)
T ss_pred ----------------H----HHHHHHHhhccccCceEEecCchHHHHHHHhh--HHHHhccH-HHHHHHHhCCCEEEEE
Confidence 0 1111111 11111121222 22 24778888 55555554 5789999999999862
Q ss_pred c-ccccchhHHHHHhhhc--------ceEEeeecCCCCccCHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHhhhcC
Q 043859 390 L-YSEQRMNATILTEELG--------VAIRSKVLPSKGVVGREEIKTMVRRILVDEE-GYEIRAKVKELQRSAQKAWTRE 459 (484)
Q Consensus 390 ~-~~DQ~~na~rv~~~~G--------~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~~~~a~~~~ 459 (484)
- ..=-+..|++.. ... +|..+-+.=..+..+++.|.+++.+++.|+. -+++++...+|+.. + ++
T Consensus 291 k~~~it~~iak~lv-k~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~----l-~~ 364 (381)
T COG0763 291 KVKPITYFIAKRLV-KLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQY----L-RE 364 (381)
T ss_pred eccHHHHHHHHHhc-cCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHH----H-cC
Confidence 1 011122233332 211 1111110001146889999999999999973 23456666666555 4 55
Q ss_pred CCChHHHHHHHHHHH
Q 043859 460 SGSSYSSLARLAKEC 474 (484)
Q Consensus 460 ~g~~~~~~~~~~~~~ 474 (484)
+.+++.+.+.+++.+
T Consensus 365 ~~~~e~aA~~vl~~~ 379 (381)
T COG0763 365 DPASEIAAQAVLELL 379 (381)
T ss_pred CcHHHHHHHHHHHHh
Confidence 556666666666553
No 94
>PLN02275 transferase, transferring glycosyl groups
Probab=98.27 E-value=0.0018 Score=64.33 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=51.6
Q ss_pred CceEecC-Ccchhh---hccCCCcccccc-c-----cC-chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEee
Q 043859 344 IGVVVPQ-WAPQID---ILSHPSVGGFLS-H-----CG-WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSK 412 (484)
Q Consensus 344 ~~v~v~~-~ipq~~---vL~~~~~~~~It-H-----gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~ 412 (484)
.|+.+.. |+|..+ +|+.+|+ +|. + -| -+++.||+++|+|+|+... ..+...| ++-+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEEC
Confidence 4566544 787654 5999994 552 1 12 3479999999999999743 3355555 5666787752
Q ss_pred ecCCCCccCHHHHHHHHHHHh
Q 043859 413 VLPSKGVVGREEIKTMVRRIL 433 (484)
Q Consensus 413 ~~~~~~~~~~~~l~~~i~~vl 433 (484)
+.+++.++|.++|
T Consensus 359 --------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --------SSSELADQLLELL 371 (371)
T ss_pred --------CHHHHHHHHHHhC
Confidence 4788999988775
No 95
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.24 E-value=0.00097 Score=66.97 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=57.6
Q ss_pred CCceEecCCcch-hhhccCCCccccc--cc--cCch-hHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCC
Q 043859 343 DIGVVVPQWAPQ-IDILSHPSVGGFL--SH--CGWN-STLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPS 416 (484)
Q Consensus 343 ~~~v~v~~~ipq-~~vL~~~~~~~~I--tH--gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 416 (484)
..++.+.+++++ ..++.++++ +| ++ .|.+ .+.||+++|+|+|+.+...+. +.+..|.|+.+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~------i~~~~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG------IDALPGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc------ccccCCcceEeC----
Confidence 457888899986 468899995 44 32 4544 699999999999998754321 112345666542
Q ss_pred CCccCHHHHHHHHHHHhcccc
Q 043859 417 KGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~vl~~~~ 437 (484)
-+++++.++|.++++|+.
T Consensus 347 ---~~~~~la~ai~~ll~~~~ 364 (397)
T TIGR03087 347 ---ADPADFAAAILALLANPA 364 (397)
T ss_pred ---CCHHHHHHHHHHHHcCHH
Confidence 478999999999999865
No 96
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.21 E-value=0.0033 Score=63.22 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=72.1
Q ss_pred CceEecCCcchh---hhccCCCcccccc--c-------cCc-hhHHHHHhcCCceeecccccccchhHHHHHhhhcceEE
Q 043859 344 IGVVVPQWAPQI---DILSHPSVGGFLS--H-------CGW-NSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIR 410 (484)
Q Consensus 344 ~~v~v~~~ipq~---~vL~~~~~~~~It--H-------gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~ 410 (484)
+++.+.+|+|+. ++|..+++ +|. + -|. ++++||+++|+|+|+.... .....+ ++-..|..
T Consensus 279 ~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~l 351 (406)
T PRK15427 279 DVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGWL 351 (406)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceEE
Confidence 578888999875 47889994 553 2 344 5689999999999997543 333444 45456766
Q ss_pred eeecCCCCccCHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHh
Q 043859 411 SKVLPSKGVVGREEIKTMVRRILV-DEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECG 475 (484)
Q Consensus 411 l~~~~~~~~~~~~~l~~~i~~vl~-~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~ 475 (484)
++ .-+.+++.++|.++++ |++ .+ +++++.+++.+ .+.-+....++++.+-++
T Consensus 352 v~------~~d~~~la~ai~~l~~~d~~---~~---~~~~~~ar~~v-~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 352 VP------ENDAQALAQRLAAFSQLDTD---EL---APVVKRAREKV-ETDFNQQVINRELASLLQ 404 (406)
T ss_pred eC------CCCHHHHHHHHHHHHhCCHH---HH---HHHHHHHHHHH-HHhcCHHHHHHHHHHHHh
Confidence 64 3478999999999998 754 22 23333333333 333445555566655544
No 97
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.17 E-value=0.0008 Score=64.76 Aligned_cols=320 Identities=17% Similarity=0.113 Sum_probs=174.4
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCch-hHHHHHhhhccCCCceEEEecCCCCCCCCCCCCch
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTS-AAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAA 84 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 84 (484)
++||| ++-++++=.+.-+-.|.+++.+.++.+..++.|....+ .+....++.+. +.. |...+.-. ..+.
T Consensus 2 ~~~Kv-~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~----i~~---pdy~L~i~-~~~~- 71 (383)
T COG0381 2 KMLKV-LTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFG----IRK---PDYDLNIM-KPGQ- 71 (383)
T ss_pred CceEE-EEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhC----CCC---CCcchhcc-ccCC-
Confidence 34444 45578899999999999999987237777777765542 44555666655 221 22111111 1121
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeC--Cc-hhhHHHHHHHhCCCeEEEecccHHHHHHHHhhccccccccCc
Q 043859 85 VVTIISVIMREIKPAFRSAISALKTTPTALIVD--LF-GTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQGQ 161 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D--~~-~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~~~ 161 (484)
.+......+...+.+++++. +||+|++. -. +.+++.+|.+++||+.-+-...-+. .
T Consensus 72 ---tl~~~t~~~i~~~~~vl~~~--kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~----------~------ 130 (383)
T COG0381 72 ---TLGEITGNIIEGLSKVLEEE--KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTG----------D------ 130 (383)
T ss_pred ---CHHHHHHHHHHHHHHHHHhh--CCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccC----------C------
Confidence 23455556677888999999 99999854 33 4455789999999977765321000 0
Q ss_pred cccCCccccCCCCCCCCcCCCCCccccCCchhHHHHHHhhhcccCccEEEEcChhhhcHHHHHHHhhccccCCCCCC-C-
Q 043859 162 YVVQNESFNIPGCRPLRPEDVVDPMLDRTNQQYFEYVHIGEEIPLSDGILVNTWEDLQPTALTALRDDKSLGRITKV-P- 239 (484)
Q Consensus 162 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~rp~~p-~- 239 (484)
.. ++.- .-+...... ++..+.++-. .. -...+.. .| .
T Consensus 131 -----------------~~-~PEE-------~NR~l~~~~-----S~~hfapte~--ar--~nLl~EG-------~~~~~ 169 (383)
T COG0381 131 -----------------LY-FPEE-------INRRLTSHL-----SDLHFAPTEI--AR--KNLLREG-------VPEKR 169 (383)
T ss_pred -----------------CC-CcHH-------HHHHHHHHh-----hhhhcCChHH--HH--HHHHHcC-------CCccc
Confidence 00 0000 000000111 1111111110 00 0111111 22 2
Q ss_pred eEEeccccCC-----CCCCCCccccccc-cCCCCCCeEEEEecCCCCCCCHHHHHHHHHHH----hhC-CCcEEEEEeCC
Q 043859 240 IYTVGPIIRR-----LGPAGSWNELFDW-LDKQPSESVLYVSFGSGGTLTYEQITELAWGL----ELS-QQRFIWVVRLP 308 (484)
Q Consensus 240 ~~~vGpl~~~-----~~~~~~~~~~~~~-l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al----~~~-~~~~i~~~~~~ 308 (484)
++.+|-...+ ......+.+.... +.. +.+..+++|+=--.+.. +.+..++.++ +.. +..+|.-+ +
T Consensus 170 IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~--H 245 (383)
T COG0381 170 IFVTGNTVIDALLNTRDRVLEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPV--H 245 (383)
T ss_pred eEEeCChHHHHHHHHHhhhccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeC--C
Confidence 7777744332 0000111122111 222 23458888764322222 2244444444 333 34444443 3
Q ss_pred CCCCCCCCcccCCCCCCCCCccCCCchhH-HHhhcC-CceEec---CCcchhhhccCCCccccccccCchhHHHHHhcCC
Q 043859 309 NETTGDGSFFTAGSGAGDDDLSSLLPDGF-LSRTLD-IGVVVP---QWAPQIDILSHPSVGGFLSHCGWNSTLESITNGV 383 (484)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~-~~~~~~-~~v~v~---~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~Gv 383 (484)
.++ .+ .++ ....++ +++.+. +|.+...+++++- +++|-.|. -.-||-..|+
T Consensus 246 ~~~--------------------~v-~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~--~iltDSGg-iqEEAp~lg~ 301 (383)
T COG0381 246 PRP--------------------RV-RELVLKRLKNVERVKLIDPLGYLDFHNLMKNAF--LILTDSGG-IQEEAPSLGK 301 (383)
T ss_pred CCh--------------------hh-hHHHHHHhCCCCcEEEeCCcchHHHHHHHHhce--EEEecCCc-hhhhHHhcCC
Confidence 210 00 111 123333 355544 4678888999998 89998875 5679999999
Q ss_pred ceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccc
Q 043859 384 PMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 384 P~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
|.+++=...++|. ++ +.|.-+.+ ..+.+.|.+++.+++++++
T Consensus 302 Pvl~lR~~TERPE---~v--~agt~~lv-------g~~~~~i~~~~~~ll~~~~ 343 (383)
T COG0381 302 PVLVLRDTTERPE---GV--EAGTNILV-------GTDEENILDAATELLEDEE 343 (383)
T ss_pred cEEeeccCCCCcc---ce--ecCceEEe-------CccHHHHHHHHHHHhhChH
Confidence 9999988889887 33 55766664 4577999999999999876
No 98
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.17 E-value=0.0098 Score=63.61 Aligned_cols=132 Identities=12% Similarity=0.177 Sum_probs=72.7
Q ss_pred CCeEEEEcCCC-------------ccChHHHHHHHHH--------HHhcCCC----eEEEEecCCCchh--HHHHHhhhc
Q 043859 7 KPHAVLLASPG-------------VGHVIPVLELGKR--------LVTLYNF----QVTIFVVASQTSA--AESKILQSA 59 (484)
Q Consensus 7 ~~~il~~~~p~-------------~GHv~P~l~La~~--------L~~r~Gh----~Vt~~~~~~~~~~--~~~~~~~~~ 59 (484)
.|||++++.=+ -|+.-=.+.+|++ |+++ || +|+++|--..... -....++..
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~-G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~ 333 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQ-GLEITPKILIVTRLIPDAEGTTCNQRLEKV 333 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhc-CCCccceEEEEecCCCCccccccccccccc
Confidence 57998877654 4555556667776 5688 99 7778885432100 000112233
Q ss_pred cCCCceEEEecCCCCCCC-CCCCCchHHHHHHHHHHHhhHHHHH-HHHhcCCCCeEEEeCCchh--hHHHHHHHhCCCeE
Q 043859 60 MSSKLCHVIEIPAPDISG-LVDPDAAVVTIISVIMREIKPAFRS-AISALKTTPTALIVDLFGT--ESLAIAEELQIPKY 135 (484)
Q Consensus 60 ~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~pD~VI~D~~~~--~~~~~A~~lgIP~v 135 (484)
....+.++..+|...... .++. +-.+..++.++......+.+ +......+||+|++.+... .+..+|+++|||.+
T Consensus 334 ~~~~~~~I~rvp~g~~~~~~~~~-~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~lgVP~v 412 (784)
T TIGR02470 334 YGTEHAWILRVPFRTENGIILRN-WISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARKLGVTQC 412 (784)
T ss_pred cCCCceEEEEecCCCCccccccc-ccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHhcCCCEE
Confidence 323467777777644321 1111 11223344444444444443 3333344799999886443 34579999999977
Q ss_pred EEecc
Q 043859 136 VYVGT 140 (484)
Q Consensus 136 ~~~~~ 140 (484)
....+
T Consensus 413 ~t~Hs 417 (784)
T TIGR02470 413 TIAHA 417 (784)
T ss_pred EECCc
Confidence 65443
No 99
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.12 E-value=0.00097 Score=68.45 Aligned_cols=106 Identities=16% Similarity=0.052 Sum_probs=62.0
Q ss_pred hhccCCCcccccc---ccCch-hHHHHHhcCCceeeccccc--ccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHH
Q 043859 356 DILSHPSVGGFLS---HCGWN-STLESITNGVPMIVWPLYS--EQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMV 429 (484)
Q Consensus 356 ~vL~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i 429 (484)
.+++.++ +++. +-|.| +.+||+++|+|.|+.-..+ |.-.+...- .+.+.|..++ .-+++++.++|
T Consensus 352 ~~~~~aD--v~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~------~~d~~~la~~i 422 (466)
T PRK00654 352 RIYAGAD--MFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFD------DFNAEDLLRAL 422 (466)
T ss_pred HHHhhCC--EEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeC------CCCHHHHHHHH
Confidence 5788999 4553 33544 8889999999999875432 211111010 1226777764 34789999999
Q ss_pred HHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhhh
Q 043859 430 RRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGMM 477 (484)
Q Consensus 430 ~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~~ 477 (484)
.+++.+.. -.+..+++++. ++ .+.-|-.+.++++++-.+++
T Consensus 423 ~~~l~~~~---~~~~~~~~~~~---~~-~~~fsw~~~a~~~~~lY~~~ 463 (466)
T PRK00654 423 RRALELYR---QPPLWRALQRQ---AM-AQDFSWDKSAEEYLELYRRL 463 (466)
T ss_pred HHHHHHhc---CHHHHHHHHHH---Hh-ccCCChHHHHHHHHHHHHHH
Confidence 99986421 11112333333 23 44566666667766655554
No 100
>PLN00142 sucrose synthase
Probab=98.10 E-value=0.0017 Score=69.33 Aligned_cols=113 Identities=12% Similarity=0.163 Sum_probs=61.6
Q ss_pred HHHHHHHhcCCCeEE----EEecCCCch--hHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHhhHH
Q 043859 26 ELGKRLVTLYNFQVT----IFVVASQTS--AAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKPA 99 (484)
Q Consensus 26 ~La~~L~~r~Gh~Vt----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (484)
.|+++|+++ ||+|+ ++|--...+ .-....++......+.++..+|.....+.++. +-.+..++.++......
T Consensus 319 el~~~l~~~-G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~-~i~ke~l~p~L~~f~~~ 396 (815)
T PLN00142 319 EMLLRIKQQ-GLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILRK-WISRFDVWPYLETFAED 396 (815)
T ss_pred HHHHHHHhc-CCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCcccccc-ccCHHHHHHHHHHHHHH
Confidence 366888899 99875 666321110 00011122333333677777786542222111 11222344444444444
Q ss_pred HHHHH-HhcCCCCeEEEeCCchh--hHHHHHHHhCCCeEEEecc
Q 043859 100 FRSAI-SALKTTPTALIVDLFGT--ESLAIAEELQIPKYVYVGT 140 (484)
Q Consensus 100 l~~~l-~~~~~~pD~VI~D~~~~--~~~~~A~~lgIP~v~~~~~ 140 (484)
+.+.+ ++...+||+|.+.+... .+..+|+++|||.+....+
T Consensus 397 ~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~Hs 440 (815)
T PLN00142 397 AASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHA 440 (815)
T ss_pred HHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEccc
Confidence 44333 34444799999886544 3447999999999987654
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.09 E-value=0.021 Score=60.84 Aligned_cols=81 Identities=16% Similarity=0.103 Sum_probs=56.7
Q ss_pred CceEecCCcch-hhhccCCCcccccc---ccC-chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCC
Q 043859 344 IGVVVPQWAPQ-IDILSHPSVGGFLS---HCG-WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKG 418 (484)
Q Consensus 344 ~~v~v~~~ipq-~~vL~~~~~~~~It---HgG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~ 418 (484)
++|.+.+|.++ ..+|..+++ +|. +.| -++++||+++|+|+|+.... .....| ++-..|+.++. .
T Consensus 574 ~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~----~ 642 (694)
T PRK15179 574 ERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPA----D 642 (694)
T ss_pred CcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCC----C
Confidence 57888888875 468899995 443 445 46899999999999997642 344455 45446777753 4
Q ss_pred ccCHHHHHHHHHHHhcc
Q 043859 419 VVGREEIKTMVRRILVD 435 (484)
Q Consensus 419 ~~~~~~l~~~i~~vl~~ 435 (484)
..+.+++.+++.+++.+
T Consensus 643 d~~~~~La~aL~~ll~~ 659 (694)
T PRK15179 643 TVTAPDVAEALARIHDM 659 (694)
T ss_pred CCChHHHHHHHHHHHhC
Confidence 45667788888777654
No 102
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.09 E-value=0.00092 Score=65.66 Aligned_cols=80 Identities=15% Similarity=0.156 Sum_probs=55.0
Q ss_pred CCceEecCCcchh---hhccCCCccccccc----cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecC
Q 043859 343 DIGVVVPQWAPQI---DILSHPSVGGFLSH----CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLP 415 (484)
Q Consensus 343 ~~~v~v~~~ipq~---~vL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~ 415 (484)
..++.+.+|+|+. ++|..+++ ++.- |..+++.||+++|+|+|+.... .....+ .+. |..+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~-~~~--~~~~~--- 319 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVA-GDA--ALYFD--- 319 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Ccccee-cCc--eeeeC---
Confidence 4588888999775 57888885 4322 3355899999999999986542 222222 232 33332
Q ss_pred CCCccCHHHHHHHHHHHhcccc
Q 043859 416 SKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 416 ~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
.-+.+++.++|.+++.|++
T Consensus 320 ---~~~~~~~~~~i~~l~~~~~ 338 (365)
T cd03809 320 ---PLDPEALAAAIERLLEDPA 338 (365)
T ss_pred ---CCCHHHHHHHHHHHhcCHH
Confidence 3378999999999998866
No 103
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.02 E-value=0.0061 Score=60.54 Aligned_cols=110 Identities=17% Similarity=0.118 Sum_probs=64.6
Q ss_pred CceEecCCc--ch---hhhccCCCcccccccc---C-chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeec
Q 043859 344 IGVVVPQWA--PQ---IDILSHPSVGGFLSHC---G-WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVL 414 (484)
Q Consensus 344 ~~v~v~~~i--pq---~~vL~~~~~~~~ItHg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~ 414 (484)
+++.+..+. ++ .++++.++ +|+.-. | -.++.||+++|+|+|+.... .....+ ++-..|..++
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad--~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i-~~~~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRAST--VVLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQI-EDGETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCe--EEEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhc-ccCCceEEeC--
Confidence 356666665 33 25788888 566432 2 34999999999999986533 333344 4555666542
Q ss_pred CCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHh
Q 043859 415 PSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECG 475 (484)
Q Consensus 415 ~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~ 475 (484)
+.+.+..+|.+++.+++ .++ +|++.+++.+ .+..+-...++++++.+.
T Consensus 323 ------~~~~~a~~i~~ll~~~~---~~~---~~~~~a~~~~-~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPE---LRR---KMGANAREHV-RENFLITRHLKDYLYLIS 370 (372)
T ss_pred ------CcHHHHHHHHHHHcCHH---HHH---HHHHHHHHHH-HHHcCHHHHHHHHHHHHH
Confidence 45678889999998765 332 2222222222 233445555666665544
No 104
>PLN02949 transferase, transferring glycosyl groups
Probab=98.01 E-value=0.014 Score=59.60 Aligned_cols=118 Identities=16% Similarity=0.062 Sum_probs=69.5
Q ss_pred CCceEecCCcchh---hhccCCCcccccc---ccCch-hHHHHHhcCCceeecccccccchhHHHHHhh-hc-ceEEeee
Q 043859 343 DIGVVVPQWAPQI---DILSHPSVGGFLS---HCGWN-STLESITNGVPMIVWPLYSEQRMNATILTEE-LG-VAIRSKV 413 (484)
Q Consensus 343 ~~~v~v~~~ipq~---~vL~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~-~G-~g~~l~~ 413 (484)
.+++.+..++|+. ++|..++ ++++ +-|.| ++.||+++|+|+|+....+--. ..+.++ .| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~--~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAV--AGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCc--EEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC--
Confidence 3578888999765 4788888 4552 23444 7999999999999986543100 111011 12 23221
Q ss_pred cCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhhhhhc
Q 043859 414 LPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGMMTKR 480 (484)
Q Consensus 414 ~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~ 480 (484)
-+.++++++|.+++++++. .+ ++|++.+++.. .+ -|.....+++.+.+..+..+
T Consensus 407 ------~~~~~la~ai~~ll~~~~~--~r---~~m~~~ar~~~-~~-FS~e~~~~~~~~~i~~l~~~ 460 (463)
T PLN02949 407 ------TTVEEYADAILEVLRMRET--ER---LEIAAAARKRA-NR-FSEQRFNEDFKDAIRPILNS 460 (463)
T ss_pred ------CCHHHHHHHHHHHHhCCHH--HH---HHHHHHHHHHH-HH-cCHHHHHHHHHHHHHHHHhh
Confidence 2789999999999985320 22 23333333333 22 55666777777766665443
No 105
>PLN02316 synthase/transferase
Probab=97.88 E-value=0.025 Score=62.24 Aligned_cols=107 Identities=7% Similarity=-0.084 Sum_probs=64.3
Q ss_pred hhccCCCcccccccc---C-chhHHHHHhcCCceeeccccc--ccchhH----HH--HHhhhcceEEeeecCCCCccCHH
Q 043859 356 DILSHPSVGGFLSHC---G-WNSTLESITNGVPMIVWPLYS--EQRMNA----TI--LTEELGVAIRSKVLPSKGVVGRE 423 (484)
Q Consensus 356 ~vL~~~~~~~~ItHg---G-~gs~~eal~~GvP~v~~P~~~--DQ~~na----~r--v~~~~G~g~~l~~~~~~~~~~~~ 423 (484)
.+++.++ +|+.-. | -.+.+||+++|+|.|+.-..+ |.-... .+ ....-+-|..++ ..+++
T Consensus 915 ~iyaaAD--iflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~------~~d~~ 986 (1036)
T PLN02316 915 LIYAGAD--FILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFD------GADAA 986 (1036)
T ss_pred HHHHhCc--EEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeC------CCCHH
Confidence 5788888 566432 2 348999999999988865433 221110 00 000124576653 56889
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhh
Q 043859 424 EIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGM 476 (484)
Q Consensus 424 ~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~ 476 (484)
.|..+|.++|.+ |.+....+++.++.++ ...-|-.+.+++.++-.++
T Consensus 987 aLa~AL~raL~~-----~~~~~~~~~~~~r~~m-~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 987 GVDYALNRAISA-----WYDGRDWFNSLCKRVM-EQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred HHHHHHHHHHhh-----hhhhHHHHHHHHHHHH-HhhCCHHHHHHHHHHHHHH
Confidence 999999999976 3333444555555555 5555666666666554443
No 106
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.72 E-value=0.01 Score=59.93 Aligned_cols=80 Identities=19% Similarity=0.008 Sum_probs=53.8
Q ss_pred CceEecCCcchh---hhccCCCccccccc----cCchhHHHHHhcCCceeecccccccchhHHHHHh---hhcceEEeee
Q 043859 344 IGVVVPQWAPQI---DILSHPSVGGFLSH----CGWNSTLESITNGVPMIVWPLYSEQRMNATILTE---ELGVAIRSKV 413 (484)
Q Consensus 344 ~~v~v~~~ipq~---~vL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~---~~G~g~~l~~ 413 (484)
++|.+..++|+. .+|..++ ++|+- +=..++.||+++|+|.|+.-..+.- ...+ + +-..|...
T Consensus 305 ~~V~f~g~v~~~~l~~~l~~ad--v~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv-~~~~~g~~G~l~-- 376 (419)
T cd03806 305 DKVEFVVNAPFEELLEELSTAS--IGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIV-VPWDGGPTGFLA-- 376 (419)
T ss_pred CeEEEecCCCHHHHHHHHHhCe--EEEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hhee-eccCCCCceEEe--
Confidence 578888998865 5788888 44431 2224889999999999986533211 1112 2 33466552
Q ss_pred cCCCCccCHHHHHHHHHHHhcccc
Q 043859 414 LPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 414 ~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
. ++++++++|.+++++++
T Consensus 377 ----~--d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 ----S--TAEEYAEAIEKILSLSE 394 (419)
T ss_pred ----C--CHHHHHHHHHHHHhCCH
Confidence 2 78999999999998754
No 107
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.68 E-value=0.047 Score=56.23 Aligned_cols=108 Identities=17% Similarity=0.011 Sum_probs=64.8
Q ss_pred ceEecCCcch---hhhccCCCccccccc---cCch-hHHHHHhcCCceeecccccccchhHHHHHhhh------cceEEe
Q 043859 345 GVVVPQWAPQ---IDILSHPSVGGFLSH---CGWN-STLESITNGVPMIVWPLYSEQRMNATILTEEL------GVAIRS 411 (484)
Q Consensus 345 ~v~v~~~ipq---~~vL~~~~~~~~ItH---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~------G~g~~l 411 (484)
++.+....+. ..+++.++ +++.- -|.| +.+||+++|+|.|+-...+ ....| ++. +.|..+
T Consensus 347 ~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~ 419 (473)
T TIGR02095 347 NVRVIIGYDEALAHLIYAGAD--FILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLF 419 (473)
T ss_pred cEEEEEcCCHHHHHHHHHhCC--EEEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEe
Confidence 4554444443 25788899 45532 2444 7889999999999865532 22222 232 677776
Q ss_pred eecCCCCccCHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHh
Q 043859 412 KVLPSKGVVGREEIKTMVRRILV----DEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECG 475 (484)
Q Consensus 412 ~~~~~~~~~~~~~l~~~i~~vl~----~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~ 475 (484)
. .-+++++.++|.+++. +++ ..+++++. ++ .+.-|-.+.++++++-.+
T Consensus 420 ~------~~d~~~la~~i~~~l~~~~~~~~------~~~~~~~~---~~-~~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 420 E------EYDPGALLAALSRALRLYRQDPS------LWEALQKN---AM-SQDFSWDKSAKQYVELYR 471 (473)
T ss_pred C------CCCHHHHHHHHHHHHHHHhcCHH------HHHHHHHH---Hh-ccCCCcHHHHHHHHHHHH
Confidence 4 4578899999999987 322 12233333 23 445566666666665544
No 108
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.63 E-value=0.056 Score=55.68 Aligned_cols=114 Identities=16% Similarity=0.037 Sum_probs=62.7
Q ss_pred CceEec-CCcch--hhhccCCCccccccc---cCc-hhHHHHHhcCCceeeccccc--ccchhHHHHHhhhcceEEeeec
Q 043859 344 IGVVVP-QWAPQ--IDILSHPSVGGFLSH---CGW-NSTLESITNGVPMIVWPLYS--EQRMNATILTEELGVAIRSKVL 414 (484)
Q Consensus 344 ~~v~v~-~~ipq--~~vL~~~~~~~~ItH---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~G~g~~l~~~ 414 (484)
.++.+. .+... ..++..+++ ++.- -|. .+.+||+++|+|.|+....+ |.-.+...- .+-|.|..++
T Consensus 351 ~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~-- 425 (476)
T cd03791 351 GRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFE-- 425 (476)
T ss_pred CcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeC--
Confidence 455543 44322 247888884 4432 233 37789999999999876533 221111111 1335787764
Q ss_pred CCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHH
Q 043859 415 PSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKE 473 (484)
Q Consensus 415 ~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~ 473 (484)
.-+++++.++|.+++.... -++...++++. ++ ...-+-...++++++-
T Consensus 426 ----~~~~~~l~~~i~~~l~~~~---~~~~~~~~~~~---~~-~~~fsw~~~a~~~~~~ 473 (476)
T cd03791 426 ----GYNADALLAALRRALALYR---DPEAWRKLQRN---AM-AQDFSWDRSAKEYLEL 473 (476)
T ss_pred ----CCCHHHHHHHHHHHHHHHc---CHHHHHHHHHH---Hh-ccCCChHHHHHHHHHH
Confidence 3478999999999986422 12222333333 33 3334455555555543
No 109
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.00053 Score=55.15 Aligned_cols=83 Identities=22% Similarity=0.209 Sum_probs=57.7
Q ss_pred eEecCCc--c-hhhhccCCCccccccccCchhHHHHHhcCCceeeccccc--------ccchhHHHHHhhhcceEEeeec
Q 043859 346 VVVPQWA--P-QIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYS--------EQRMNATILTEELGVAIRSKVL 414 (484)
Q Consensus 346 v~v~~~i--p-q~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~--------DQ~~na~rv~~~~G~g~~l~~~ 414 (484)
.++.+|. + -..+...++ ++|+|+|-||++.++..++|.|++|-.. +|-.-|..++ +.+.-+...+
T Consensus 48 l~v~~F~~~~kiQsli~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~sp- 123 (161)
T COG5017 48 LRVYGFDKEEKIQSLIHDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACSP- 123 (161)
T ss_pred cEEEeechHHHHHHHhhcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEcC-
Confidence 3444444 4 345677777 8999999999999999999999999543 6888899885 7887766642
Q ss_pred CCCCccCHHHHHHHHHHHhc
Q 043859 415 PSKGVVGREEIKTMVRRILV 434 (484)
Q Consensus 415 ~~~~~~~~~~l~~~i~~vl~ 434 (484)
.+..=.+.+.....+++.
T Consensus 124 --te~~L~a~l~~s~~~v~~ 141 (161)
T COG5017 124 --TELVLQAGLQVSVADVLH 141 (161)
T ss_pred --CchhhHHhHhhhhhhhcC
Confidence 122233444445555553
No 110
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.55 E-value=0.00084 Score=67.18 Aligned_cols=141 Identities=22% Similarity=0.309 Sum_probs=77.0
Q ss_pred CCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHh-----h
Q 043859 267 PSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSR-----T 341 (484)
Q Consensus 267 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-----~ 341 (484)
++..++|.+|.+.....++.+..-.+-|+..+...+|....+.. + . +.+... +
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~---------------~---~----~~l~~~~~~~Gv 339 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS---------------G---E----ARLRRRFAAHGV 339 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT---------------H---H----HHHHHHHHHTTS
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH---------------H---H----HHHHHHHHHcCC
Confidence 45569999999998889998888888888888889998854421 0 0 122221 2
Q ss_pred cCCceEecCCcchhhh---ccCCCccc-cccccCchhHHHHHhcCCceeecccccc-cchhHHHHHhhhcceEEeeecCC
Q 043859 342 LDIGVVVPQWAPQIDI---LSHPSVGG-FLSHCGWNSTLESITNGVPMIVWPLYSE-QRMNATILTEELGVAIRSKVLPS 416 (484)
Q Consensus 342 ~~~~v~v~~~ipq~~v---L~~~~~~~-~ItHgG~gs~~eal~~GvP~v~~P~~~D-Q~~na~rv~~~~G~g~~l~~~~~ 416 (484)
..+.+.+..+.++.+. +..+|+.| ....+|.+|++|||+.|||+|.+|--.- ...-|..+ ..+|+.-.+
T Consensus 340 ~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElI----- 413 (468)
T PF13844_consen 340 DPDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELI----- 413 (468)
T ss_dssp -GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB-----
T ss_pred ChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhc-----
Confidence 2345666677766543 44566311 2356899999999999999999994332 23333444 566766443
Q ss_pred CCccCHHHHHHHHHHHhcccc
Q 043859 417 KGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~vl~~~~ 437 (484)
..+.++-.+...++-+|.+
T Consensus 414 --A~s~~eYv~~Av~La~D~~ 432 (468)
T PF13844_consen 414 --ADSEEEYVEIAVRLATDPE 432 (468)
T ss_dssp ---SSHHHHHHHHHHHHH-HH
T ss_pred --CCCHHHHHHHHHHHhCCHH
Confidence 2356666665556666654
No 111
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.55 E-value=0.1 Score=51.92 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=53.4
Q ss_pred CCceEecCCcchh---hhccCCCccccc------cccCc-hhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEee
Q 043859 343 DIGVVVPQWAPQI---DILSHPSVGGFL------SHCGW-NSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSK 412 (484)
Q Consensus 343 ~~~v~v~~~ipq~---~vL~~~~~~~~I------tHgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~ 412 (484)
.+|+.+.+++|+. .+|.++++.++- +.++. +.+.|++++|+|+|+.++ ...+ +..+.++..
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~~~~~~- 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYEDEVVLI- 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcCcEEEe-
Confidence 3589999999864 478889964332 23343 358999999999998763 2222 233323332
Q ss_pred ecCCCCccCHHHHHHHHHHHhcccc
Q 043859 413 VLPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 413 ~~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
.-+.+++.++|.+++.++.
T Consensus 324 ------~~d~~~~~~ai~~~l~~~~ 342 (373)
T cd04950 324 ------ADDPEEFVAAIEKALLEDG 342 (373)
T ss_pred ------CCCHHHHHHHHHHHHhcCC
Confidence 1279999999999876543
No 112
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.55 E-value=0.0014 Score=65.98 Aligned_cols=112 Identities=16% Similarity=0.229 Sum_probs=71.5
Q ss_pred CCceEecCCcchhh---hccCCCccccccccC----chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecC
Q 043859 343 DIGVVVPQWAPQID---ILSHPSVGGFLSHCG----WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLP 415 (484)
Q Consensus 343 ~~~v~v~~~ipq~~---vL~~~~~~~~ItHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~ 415 (484)
..++.+.+|+++.+ ++..++..++|...- -++++||+++|+|+|+-. .......+ ++.+.|..+.
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i-~~~~~G~l~~--- 359 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIV-DNGGNGLLLS--- 359 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHh-cCCCcEEEeC---
Confidence 34688889998764 555433336665432 458999999999999854 34455565 4555787764
Q ss_pred CCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHH
Q 043859 416 SKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLA 471 (484)
Q Consensus 416 ~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~ 471 (484)
..-+.+++.++|.++++|++ .+ .+|++.+++.+ .+..+.....++|+
T Consensus 360 --~~~~~~~la~~I~~ll~~~~---~~---~~m~~~ar~~~-~~~f~~~~~~~~~~ 406 (407)
T cd04946 360 --KDPTPNELVSSLSKFIDNEE---EY---QTMREKAREKW-EENFNASKNYREFA 406 (407)
T ss_pred --CCCCHHHHHHHHHHHHhCHH---HH---HHHHHHHHHHH-HHHcCHHHhHHHhc
Confidence 34578999999999998755 22 33444444444 44455555555543
No 113
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.37 E-value=0.12 Score=53.29 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=57.7
Q ss_pred CceEecCCcchhhhccCCCccccccc----cCchhHHHHHhcCCceeecccccccchhHHHHHhhh-----c-ceEEeee
Q 043859 344 IGVVVPQWAPQIDILSHPSVGGFLSH----CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEEL-----G-VAIRSKV 413 (484)
Q Consensus 344 ~~v~v~~~ipq~~vL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~-----G-~g~~l~~ 413 (484)
+++.+.+...-.++|+.+++ +|.- |--++++||+++|+|+|+- |.......+ ++. | .|..++
T Consensus 354 ~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv~- 425 (475)
T cd03813 354 DNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVVP- 425 (475)
T ss_pred CeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEEC-
Confidence 57777775556778899995 4422 3446899999999999984 444444444 342 2 666653
Q ss_pred cCCCCccCHHHHHHHHHHHhcccc
Q 043859 414 LPSKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 414 ~~~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
.-+.+++.++|.++++|+.
T Consensus 426 -----~~d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 426 -----PADPEALARAILRLLKDPE 444 (475)
T ss_pred -----CCCHHHHHHHHHHHhcCHH
Confidence 4578999999999999865
No 114
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.31 E-value=0.14 Score=53.80 Aligned_cols=76 Identities=14% Similarity=0.054 Sum_probs=51.5
Q ss_pred eEecCCcchh-hhccCCCccccccc----cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCcc
Q 043859 346 VVVPQWAPQI-DILSHPSVGGFLSH----CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVV 420 (484)
Q Consensus 346 v~v~~~ipq~-~vL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~ 420 (484)
+.+..+.+.. ++++.++ +||.- |=-.+++||+++|+|+|+.-..+. .. + .+ |.+..+. -
T Consensus 603 V~FLG~~dd~~~lyasaD--VFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~----e~-V-~~-g~nGll~-------~ 666 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVVCADHPSN----EF-F-RS-FPNCLTY-------K 666 (794)
T ss_pred EEecCCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCCEEEecCCCC----ce-E-ee-cCCeEec-------C
Confidence 5555666654 5899999 56542 234589999999999999876542 11 2 22 3332221 2
Q ss_pred CHHHHHHHHHHHhcccc
Q 043859 421 GREEIKTMVRRILVDEE 437 (484)
Q Consensus 421 ~~~~l~~~i~~vl~~~~ 437 (484)
+.+++.++|.++|.++.
T Consensus 667 D~EafAeAI~~LLsd~~ 683 (794)
T PLN02501 667 TSEDFVAKVKEALANEP 683 (794)
T ss_pred CHHHHHHHHHHHHhCch
Confidence 68999999999999864
No 115
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.26 E-value=0.0019 Score=63.50 Aligned_cols=126 Identities=16% Similarity=0.141 Sum_probs=81.1
Q ss_pred EEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCCc
Q 043859 273 YVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQWA 352 (484)
Q Consensus 273 ~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~i 352 (484)
++..|+.. .......++++++.++.+++++-.+. ..+.+.+ ...+|+.+.+++
T Consensus 198 il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~------------------------~~~~l~~-~~~~~V~~~g~~ 250 (351)
T cd03804 198 YLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP------------------------ELDRLRA-KAGPNVTFLGRV 250 (351)
T ss_pred EEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh------------------------hHHHHHh-hcCCCEEEecCC
Confidence 34557654 22347777888887776655543111 0022222 234589999999
Q ss_pred chh---hhccCCCccccccccCc-hhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHH
Q 043859 353 PQI---DILSHPSVGGFLSHCGW-NSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTM 428 (484)
Q Consensus 353 pq~---~vL~~~~~~~~ItHgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~ 428 (484)
|+. ++|+.+++-++-+.-|. .++.||+++|+|+|+....+ ....+ ++-+.|+.++ .-+.+.+.++
T Consensus 251 ~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~------~~~~~~la~~ 319 (351)
T cd03804 251 SDEELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFE------EQTVESLAAA 319 (351)
T ss_pred CHHHHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeC------CCCHHHHHHH
Confidence 974 57889995333233343 35789999999999986433 33344 4556777764 3478889999
Q ss_pred HHHHhccc
Q 043859 429 VRRILVDE 436 (484)
Q Consensus 429 i~~vl~~~ 436 (484)
|.++++|+
T Consensus 320 i~~l~~~~ 327 (351)
T cd03804 320 VERFEKNE 327 (351)
T ss_pred HHHHHhCc
Confidence 99999987
No 116
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.22 E-value=0.11 Score=52.18 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=29.7
Q ss_pred CeEEEEcC--CCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 8 PHAVLLAS--PGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 8 ~~il~~~~--p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
|||+.+.. ...|-=.-++.|++.|.++ ||+|.++..-.
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~-G~~~~i~~~~~ 40 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQ-GLASHFVYGYG 40 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhc-CCeEEEEEecC
Confidence 67776653 3555666689999999999 99999998764
No 117
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.18 E-value=0.016 Score=57.85 Aligned_cols=82 Identities=12% Similarity=0.092 Sum_probs=58.5
Q ss_pred CceEecCCcchh---hhccCCCccccccc----cCc-hhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecC
Q 043859 344 IGVVVPQWAPQI---DILSHPSVGGFLSH----CGW-NSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLP 415 (484)
Q Consensus 344 ~~v~v~~~ipq~---~vL~~~~~~~~ItH----gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~ 415 (484)
.++.+..++|+. ++|+.+++ +|.. .|. .++.||+++|+|+|+.... .+...+ ++-..|..+.
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l~--- 326 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHLA--- 326 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEEe---
Confidence 467777898754 46899994 5532 343 5778999999999997653 344444 4545676443
Q ss_pred CCCccCHHHHHHHHHHHhcccc
Q 043859 416 SKGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 416 ~~~~~~~~~l~~~i~~vl~~~~ 437 (484)
...+.+++.++|.++++|++
T Consensus 327 --~~~d~~~la~~I~~ll~d~~ 346 (380)
T PRK15484 327 --EPMTSDSIISDINRTLADPE 346 (380)
T ss_pred --CCCCHHHHHHHHHHHHcCHH
Confidence 34589999999999999875
No 118
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.15 E-value=0.068 Score=52.93 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=65.2
Q ss_pred CceEecCCcchh-hhccCCCccccccc--cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCcc
Q 043859 344 IGVVVPQWAPQI-DILSHPSVGGFLSH--CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVV 420 (484)
Q Consensus 344 ~~v~v~~~ipq~-~vL~~~~~~~~ItH--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~ 420 (484)
.++.+.++.++. .++..+++-++.++ |...+++||+++|+|+|+..... .....+ ++-..|..++ .-
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~------~~ 330 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVP------KG 330 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeC------CC
Confidence 467777777654 68999996444444 33568999999999999964321 233344 4556676653 45
Q ss_pred CHHHHHHHHHHHhcccc-hHHHHHHHHHHH
Q 043859 421 GREEIKTMVRRILVDEE-GYEIRAKVKELQ 449 (484)
Q Consensus 421 ~~~~l~~~i~~vl~~~~-~~~~~~~a~~l~ 449 (484)
+.+++.++|.+++.|++ .+.+.+++++.+
T Consensus 331 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 360 (372)
T cd04949 331 DIEALAEAIIELLNDPKLLQKFSEAAYENA 360 (372)
T ss_pred cHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 88999999999999864 344555555543
No 119
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.06 E-value=0.0018 Score=53.94 Aligned_cols=79 Identities=28% Similarity=0.334 Sum_probs=49.1
Q ss_pred CceEecCCcch-hhhccCCCccccccc--cC-chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCc
Q 043859 344 IGVVVPQWAPQ-IDILSHPSVGGFLSH--CG-WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGV 419 (484)
Q Consensus 344 ~~v~v~~~ipq-~~vL~~~~~~~~ItH--gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~ 419 (484)
.++.+.+|++. .++++.+++.+..+. .| .+++.|++++|+|+|+.+. . ....+ +..+.|..+.
T Consensus 53 ~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~----~-~~~~~-~~~~~~~~~~------- 119 (135)
T PF13692_consen 53 PNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN----G-AEGIV-EEDGCGVLVA------- 119 (135)
T ss_dssp CTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH----H-CHCHS----SEEEE-T-------
T ss_pred CCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc----c-hhhhe-eecCCeEEEC-------
Confidence 48999899975 468999998665442 23 4899999999999999876 1 22222 3467776642
Q ss_pred cCHHHHHHHHHHHhcc
Q 043859 420 VGREEIKTMVRRILVD 435 (484)
Q Consensus 420 ~~~~~l~~~i~~vl~~ 435 (484)
-+++++.++|.++++|
T Consensus 120 ~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 NDPEELAEAIERLLND 135 (135)
T ss_dssp T-HHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhcC
Confidence 2899999999999875
No 120
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.03 E-value=0.0023 Score=55.83 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=60.2
Q ss_pred CceEecCCcc--h-hhhccCCCccccccc----cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCC
Q 043859 344 IGVVVPQWAP--Q-IDILSHPSVGGFLSH----CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPS 416 (484)
Q Consensus 344 ~~v~v~~~ip--q-~~vL~~~~~~~~ItH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 416 (484)
.++.+..+++ + ..++..++ ++|+. |...++.||+++|+|+|+. |-..+...+ .+.+.|..++
T Consensus 73 ~~i~~~~~~~~~~l~~~~~~~d--i~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~---- 141 (172)
T PF00534_consen 73 ENIIFLGYVPDDELDELYKSSD--IFVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFD---- 141 (172)
T ss_dssp TTEEEEESHSHHHHHHHHHHTS--EEEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEES----
T ss_pred ccccccccccccccccccccce--eccccccccccccccccccccccceeec----cccCCceee-ccccceEEeC----
Confidence 4777778887 3 46888999 56665 5677999999999999974 455555555 4666788875
Q ss_pred CCccCHHHHHHHHHHHhcccc
Q 043859 417 KGVVGREEIKTMVRRILVDEE 437 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~vl~~~~ 437 (484)
..+.+++.++|.+++.+++
T Consensus 142 --~~~~~~l~~~i~~~l~~~~ 160 (172)
T PF00534_consen 142 --PNDIEELADAIEKLLNDPE 160 (172)
T ss_dssp --TTSHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHCCHH
Confidence 3399999999999999865
No 121
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.97 E-value=0.33 Score=45.50 Aligned_cols=108 Identities=16% Similarity=0.046 Sum_probs=76.7
Q ss_pred cCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHH
Q 043859 14 ASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIM 93 (484)
Q Consensus 14 ~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 93 (484)
-..-.-|+.-+-.+-++|.++ ||+|.+.+-+... ...++..++ +.+..+..... ..+...+....
T Consensus 6 DI~n~~hvhfFk~lI~elekk-G~ev~iT~rd~~~---v~~LLd~yg----f~~~~Igk~g~-------~tl~~Kl~~~~ 70 (346)
T COG1817 6 DIGNPPHVHFFKNLIWELEKK-GHEVLITCRDFGV---VTELLDLYG----FPYKSIGKHGG-------VTLKEKLLESA 70 (346)
T ss_pred EcCCcchhhHHHHHHHHHHhC-CeEEEEEEeecCc---HHHHHHHhC----CCeEeecccCC-------ccHHHHHHHHH
Confidence 344566888999999999999 9999988776433 235666777 66666654221 12332333333
Q ss_pred HHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecc
Q 043859 94 REIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGT 140 (484)
Q Consensus 94 ~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~ 140 (484)
.. .-.+.+++.++ +||+.+. -..+....+|--+|+|.+.+.-+
T Consensus 71 eR-~~~L~ki~~~~--kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 71 ER-VYKLSKIIAEF--KPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HH-HHHHHHHHhhc--CCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 33 34578888888 9999999 57888889999999999987643
No 122
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.84 E-value=0.093 Score=50.89 Aligned_cols=106 Identities=16% Similarity=0.120 Sum_probs=65.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcC-CCeEEEEecCCCchhHHHHHhhhccCCCce-EEEecCCCCCCCCCCCCchHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLY-NFQVTIFVVASQTSAAESKILQSAMSSKLC-HVIEIPAPDISGLVDPDAAVV 86 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~ 86 (484)
||+++-....|++.=+..+.+.|+++. +.+|++++.+.+. ..++..| .+ +++.++....... .
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~-----~~~~~~p---~vd~v~~~~~~~~~~~------~- 65 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFA-----DIVRLHP---AVDEVIPVALRRWRKT------L- 65 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHh-----hhhhcCC---CccEEEEechhhhhhc------c-
Confidence 689999999999999999999999886 8999999998765 3345444 33 3444443211000 0
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCC
Q 043859 87 TIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIP 133 (484)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP 133 (484)
+..........+...+++. ++|+||.-....-...++..++-+
T Consensus 66 --~~~~~~~~~~~~~~~lr~~--~yD~vi~~~~~~~s~~l~~~~~~~ 108 (319)
T TIGR02193 66 --FSAATWREIKALRALLRAE--RYDAVIDAQGLIKSALVARMARGP 108 (319)
T ss_pred --ccchhHHHHHHHHHHHhhc--cchhhhhhhhhHHHHHHHHhhCCc
Confidence 0000011122344445555 999988544444445566666633
No 123
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.68 E-value=0.23 Score=44.64 Aligned_cols=49 Identities=16% Similarity=0.098 Sum_probs=35.2
Q ss_pred CceEecCCcch---h-hhccCCCccccccccC----chhHHHHHhcCCceeeccccccc
Q 043859 344 IGVVVPQWAPQ---I-DILSHPSVGGFLSHCG----WNSTLESITNGVPMIVWPLYSEQ 394 (484)
Q Consensus 344 ~~v~v~~~ipq---~-~vL~~~~~~~~ItHgG----~gs~~eal~~GvP~v~~P~~~DQ 394 (484)
.|+.+.+++++ . .++..++ ++++-.. .+++.||+++|+|+|+.+..+.+
T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~d--i~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 161 DRVIFLGGLDPEELLALLLAAAD--VFVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred ccEEEeCCCCcHHHHHHHhhcCC--EEEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 47777787622 2 2444488 5676665 68999999999999998865543
No 124
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.51 E-value=0.016 Score=56.64 Aligned_cols=109 Identities=21% Similarity=0.326 Sum_probs=73.4
Q ss_pred CceEecCCcchhhh---ccCCCcccccccc-------Cc------hhHHHHHhcCCceeecccccccchhHHHHHhhhcc
Q 043859 344 IGVVVPQWAPQIDI---LSHPSVGGFLSHC-------GW------NSTLESITNGVPMIVWPLYSEQRMNATILTEELGV 407 (484)
Q Consensus 344 ~~v~v~~~ipq~~v---L~~~~~~~~ItHg-------G~------gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~ 407 (484)
+|+...+|+|+.++ |.. +.+++...- .+ +-+.+.|++|+|+|+. ++...+..| ++.++
T Consensus 207 ~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~~ 280 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENGL 280 (333)
T ss_pred CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCCc
Confidence 38888899988764 444 443332221 11 1267789999999985 456677777 78999
Q ss_pred eEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHH
Q 043859 408 AIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAK 472 (484)
Q Consensus 408 g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~ 472 (484)
|+.++ +.+++.+++.++. +++.+.+++|++++++.+ +.|.--..++++++.
T Consensus 281 G~~v~--------~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~-----~~g~~~~~~~~~~~~ 331 (333)
T PRK09814 281 GFVVD--------SLEELPEIIDNIT-EEEYQEMVENVKKISKLL-----RNGYFTKKALVDAIK 331 (333)
T ss_pred eEEeC--------CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHH-----hcchhHHHHHHHHHh
Confidence 99973 5678999998854 344556899999999884 344444445555443
No 125
>PRK14099 glycogen synthase; Provisional
Probab=96.39 E-value=1.5 Score=45.31 Aligned_cols=116 Identities=13% Similarity=0.177 Sum_probs=62.0
Q ss_pred EecCCcchh-hhc-cCCCcccccc---ccCch-hHHHHHhcCCceeeccccc--ccchhHHHHHhh--hcceEEeeecCC
Q 043859 347 VVPQWAPQI-DIL-SHPSVGGFLS---HCGWN-STLESITNGVPMIVWPLYS--EQRMNATILTEE--LGVAIRSKVLPS 416 (484)
Q Consensus 347 ~v~~~ipq~-~vL-~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~--~G~g~~l~~~~~ 416 (484)
.+..|-.+. .++ +.++ +|+. +=|.| +.+||+++|+|.|+.-..+ |--.......+. -+.|..++
T Consensus 354 ~~~G~~~~l~~~~~a~aD--ifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~---- 427 (485)
T PRK14099 354 VVIGYDEALAHLIQAGAD--ALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFS---- 427 (485)
T ss_pred EEeCCCHHHHHHHHhcCC--EEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeC----
Confidence 344664332 234 4577 5553 34444 6789999998777654322 211111000011 14677764
Q ss_pred CCccCHHHHHHHHHH---HhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhhhhhc
Q 043859 417 KGVVGREEIKTMVRR---ILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGMMTKR 480 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~---vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~ 480 (484)
.-+++++.++|.+ ++.|+. .+ +++++.+ + ...-|-.+.++++++-.+++...
T Consensus 428 --~~d~~~La~ai~~a~~l~~d~~---~~---~~l~~~~---~-~~~fSw~~~a~~y~~lY~~l~~~ 482 (485)
T PRK14099 428 --PVTADALAAALRKTAALFADPV---AW---RRLQRNG---M-TTDVSWRNPAQHYAALYRSLVAE 482 (485)
T ss_pred --CCCHHHHHHHHHHHHHHhcCHH---HH---HHHHHHh---h-hhcCChHHHHHHHHHHHHHHHhh
Confidence 3478999999997 455543 22 2233322 2 33455666667777666665443
No 126
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.31 E-value=0.073 Score=44.36 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=65.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTI 88 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 88 (484)
||++++.....| ...+++.|.++ ||+|++++.....+. .... .++.+..++... .. .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~-g~~V~ii~~~~~~~~----~~~~----~~i~~~~~~~~~-----k~---~--- 57 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKR-GYDVHIITPRNDYEK----YEII----EGIKVIRLPSPR-----KS---P--- 57 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHC-CCEEEEEEcCCCchh----hhHh----CCeEEEEecCCC-----Cc---c---
Confidence 577777766666 45779999999 999999999654311 1112 247777775321 11 1
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhh---HHHHHHHhC-CCeEEEe
Q 043859 89 ISVIMREIKPAFRSAISALKTTPTALIVDLFGTE---SLAIAEELQ-IPKYVYV 138 (484)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~---~~~~A~~lg-IP~v~~~ 138 (484)
..... .. .+.+++++. +||+|.+...... +..++...+ +|++...
T Consensus 58 -~~~~~-~~-~l~k~ik~~--~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 58 -LNYIK-YF-RLRKIIKKE--KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred -HHHHH-HH-HHHHHhccC--CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 11222 23 678888888 9999987765432 334667788 8987544
No 127
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.28 E-value=0.0063 Score=47.22 Aligned_cols=54 Identities=15% Similarity=0.174 Sum_probs=44.6
Q ss_pred CccccccccCCCCCCeEEEEecCCCCCC---CH--HHHHHHHHHHhhCCCcEEEEEeCC
Q 043859 255 SWNELFDWLDKQPSESVLYVSFGSGGTL---TY--EQITELAWGLELSQQRFIWVVRLP 308 (484)
Q Consensus 255 ~~~~~~~~l~~~~~~~~v~vs~Gs~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~ 308 (484)
.+..+..|+...+.++.|+||+||.... .. ..+..++++++.+|..+|.++...
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 4577888999988999999999987432 22 468999999999999999998544
No 128
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.09 E-value=0.17 Score=52.19 Aligned_cols=98 Identities=10% Similarity=0.037 Sum_probs=63.2
Q ss_pred CceEecCCcchhhhccCCCcccccc---ccC-chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCc
Q 043859 344 IGVVVPQWAPQIDILSHPSVGGFLS---HCG-WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGV 419 (484)
Q Consensus 344 ~~v~v~~~ipq~~vL~~~~~~~~It---HgG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~ 419 (484)
+++...++.+..+++..++ ++|. .-| -.+++||+++|+|+|+.-.. ..+...| ++-.-|..++..+ +.
T Consensus 376 ~~V~f~G~~~~~~~~~~ad--v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI-~~g~nG~lv~~~~--~~ 447 (500)
T TIGR02918 376 DYIHLKGHRNLSEVYKDYE--LYLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFI-EDNKNGYLIPIDE--EE 447 (500)
T ss_pred CeEEEcCCCCHHHHHHhCC--EEEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHc-cCCCCEEEEeCCc--cc
Confidence 4677778888788999999 4554 234 35899999999999997542 1233444 3444566654100 11
Q ss_pred cC----HHHHHHHHHHHhcccchHHHHHHHHHHH
Q 043859 420 VG----REEIKTMVRRILVDEEGYEIRAKVKELQ 449 (484)
Q Consensus 420 ~~----~~~l~~~i~~vl~~~~~~~~~~~a~~l~ 449 (484)
-+ .++++++|.+++.++....+.+++++.+
T Consensus 448 ~d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a 481 (500)
T TIGR02918 448 DDEDQIITALAEKIVEYFNSNDIDAFHEYSYQIA 481 (500)
T ss_pred cchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 22 7889999999996544444555555543
No 129
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.79 E-value=0.088 Score=53.53 Aligned_cols=122 Identities=18% Similarity=0.272 Sum_probs=80.1
Q ss_pred CCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHH-----hh
Q 043859 267 PSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLS-----RT 341 (484)
Q Consensus 267 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-----~~ 341 (484)
++..+||.+|--.-..+++.++.-++-|+..+..++|..+.+.. ++ ..|+. .+
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~---------------ge-------~rf~ty~~~~Gl 813 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAV---------------GE-------QRFRTYAEQLGL 813 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecccc---------------ch-------HHHHHHHHHhCC
Confidence 34568999998887888999999999999999999999977642 11 12211 11
Q ss_pred cCCceEecCCcchhh-----hccCCCccccccccCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEe
Q 043859 342 LDIGVVVPQWAPQID-----ILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRS 411 (484)
Q Consensus 342 ~~~~v~v~~~ipq~~-----vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l 411 (484)
..+.+.+.+-+.-.+ .|..-.+.-+.| .|..|.++.|+.|||||.+|.-.---..|.-+....|+|-.+
T Consensus 814 ~p~riifs~va~k~eHvrr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hli 887 (966)
T KOG4626|consen 814 EPDRIIFSPVAAKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLI 887 (966)
T ss_pred CccceeeccccchHHHHHhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHH
Confidence 233455544443332 222222222344 467899999999999999997665555555443577888654
No 130
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.76 E-value=0.027 Score=50.06 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=62.3
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
||||+..=-+. +---+..|+++|.+. ||+|+++.+...+.-...++--.. .++............ ......-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~-g~~V~VvAP~~~~Sg~g~sit~~~----pl~~~~~~~~~~~~~-~~~~~v~G 73 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSAL-GHDVVVVAPDSEQSGTGHSITLHK----PLRVTEVEPGHDPGG-VEAYAVSG 73 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTT-SSEEEEEEESSSTTTSTTS--SSS----EEEEEEEE-TTCCST-TEEEEESS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhc-CCeEEEEeCCCCCcCcceeecCCC----CeEEEEEEecccCCC-CCEEEEcC
Confidence 78888877666 666788999999777 899999999976532111111112 255433321000000 11111000
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEEeC----------Cch---hhHHHHHHHhCCCeEEEecc
Q 043859 88 IISVIMREIKPAFRSAISALKTTPTALIVD----------LFG---TESLAIAEELQIPKYVYVGT 140 (484)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D----------~~~---~~~~~~A~~lgIP~v~~~~~ 140 (484)
.-.+... -.+..++.+. +||+||+- .++ .+++..|...|||.|.++..
T Consensus 74 TPaDcv~---~al~~~~~~~--~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 74 TPADCVK---LALDGLLPDK--KPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp -HHHHHH---HHHHCTSTTS--S-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred cHHHHHH---HHHHhhhccC--CCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 0112121 2333444443 69999964 222 33444566789999998753
No 131
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.24 Score=50.21 Aligned_cols=121 Identities=14% Similarity=0.116 Sum_probs=81.4
Q ss_pred CCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHH-----hh
Q 043859 267 PSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLS-----RT 341 (484)
Q Consensus 267 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-----~~ 341 (484)
|+..+||++|+......++.+..=+.-++..+-.++|...+..+ ..+-+.+++ .+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~--------------------~~~~~~l~~la~~~Gv 486 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD--------------------AEINARLRDLAEREGV 486 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc--------------------HHHHHHHHHHHHHcCC
Confidence 46679999999999899999888888888888899999855321 111122222 23
Q ss_pred cCCceEecCCcch---hhhccCCCccccc---cccCchhHHHHHhcCCceeecccccccch--hHHHHHhhhcceEEe
Q 043859 342 LDIGVVVPQWAPQ---IDILSHPSVGGFL---SHCGWNSTLESITNGVPMIVWPLYSEQRM--NATILTEELGVAIRS 411 (484)
Q Consensus 342 ~~~~v~v~~~ipq---~~vL~~~~~~~~I---tHgG~gs~~eal~~GvP~v~~P~~~DQ~~--na~rv~~~~G~g~~l 411 (484)
.+..+++.+-.|. .+-+.-+| +|. --||..|+.|+|..|||+|..+ ++|+- |+.-++..+|+--.+
T Consensus 487 ~~eRL~f~p~~~~~~h~a~~~iAD--lvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 487 DSERLRFLPPAPNEDHRARYGIAD--LVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred ChhheeecCCCCCHHHHHhhchhh--eeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 3445666665543 34556677 555 3699999999999999999996 67652 333333455554443
No 132
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.37 E-value=2.8 Score=40.35 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=43.2
Q ss_pred chhhhccCCCccccccccCchhHHHHHhcCCceeecccccccch----hHHHHHhhhcceEEee
Q 043859 353 PQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRM----NATILTEELGVAIRSK 412 (484)
Q Consensus 353 pq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~----na~rv~~~~G~g~~l~ 412 (484)
|+.+.|+.++. ++||--=.+-+.||++.|+|+.++|+-. +.. -...+ ++.|+-..+.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEECC
Confidence 67889999996 7888888889999999999999999876 332 12233 3557666654
No 133
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.15 E-value=4.8 Score=41.79 Aligned_cols=62 Identities=19% Similarity=0.055 Sum_probs=44.8
Q ss_pred CceEecCCcch-hhhccCCCcccccc---ccC-chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEee
Q 043859 344 IGVVVPQWAPQ-IDILSHPSVGGFLS---HCG-WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSK 412 (484)
Q Consensus 344 ~~v~v~~~ipq-~~vL~~~~~~~~It---HgG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~ 412 (484)
+++.+.+|..+ ..+|..++ +||. .-| -+++.||+++|+|+|+... ..+...| ++-..|..++
T Consensus 455 d~V~FlG~~~Dv~~~LaaAD--VfVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp 521 (578)
T PRK15490 455 ERILFVGASRDVGYWLQKMN--VFILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILD 521 (578)
T ss_pred CcEEECCChhhHHHHHHhCC--EEEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEEC
Confidence 57888888754 45889999 5664 344 5599999999999998754 3455665 4556777765
No 134
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.86 E-value=0.064 Score=45.44 Aligned_cols=97 Identities=19% Similarity=0.167 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHH
Q 043859 23 PVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKPAFRS 102 (484)
Q Consensus 23 P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (484)
-+..|+++|.++ ||+|++++....... .-.... .+.+..++....... ..... ....+..
T Consensus 6 ~~~~l~~~L~~~-G~~V~v~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~----~~~~~--------~~~~~~~ 65 (160)
T PF13579_consen 6 YVRELARALAAR-GHEVTVVTPQPDPED---DEEEED----GVRVHRLPLPRRPWP----LRLLR--------FLRRLRR 65 (160)
T ss_dssp HHHHHHHHHHHT-T-EEEEEEE---GGG----SEEET----TEEEEEE--S-SSSG----GGHCC--------HHHHHHH
T ss_pred HHHHHHHHHHHC-CCEEEEEecCCCCcc---cccccC----CceEEeccCCccchh----hhhHH--------HHHHHHH
Confidence 467899999999 999999997764431 101122 377777764332211 00000 1123344
Q ss_pred HHHhcCCCCeEEEeCCchh-hHHHHHH-HhCCCeEEEec
Q 043859 103 AISALKTTPTALIVDLFGT-ESLAIAE-ELQIPKYVYVG 139 (484)
Q Consensus 103 ~l~~~~~~pD~VI~D~~~~-~~~~~A~-~lgIP~v~~~~ 139 (484)
++.....+||+|.+..... ....++. ..++|+|....
T Consensus 66 ~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 66 LLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 4411233999999876432 2223445 78999887653
No 135
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.71 E-value=0.81 Score=46.13 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=65.5
Q ss_pred hhccCCCccccccccCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEE-eeecCCCCccCHHHHHHHHHHHhc
Q 043859 356 DILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIR-SKVLPSKGVVGREEIKTMVRRILV 434 (484)
Q Consensus 356 ~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~-l~~~~~~~~~~~~~l~~~i~~vl~ 434 (484)
.++++++ ++|..==+ ++.-|+..|||.+.+++ |.- ....+ +++|..-. .+. +.++.++|.+.+.++++
T Consensus 323 ~iIs~~d--l~ig~RlH-a~I~a~~~gvP~i~i~Y--~~K-~~~~~-~~lg~~~~~~~~----~~l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 323 KILGACE--LTVGTRLH-SAIISMNFGTPAIAINY--EHK-SAGIM-QQLGLPEMAIDI----RHLLDGSLQAMVADTLG 391 (426)
T ss_pred HHHhhCC--EEEEecch-HHHHHHHcCCCEEEeee--hHH-HHHHH-HHcCCccEEech----hhCCHHHHHHHHHHHHh
Confidence 7889998 67764333 46668899999999997 333 33344 68888765 343 67889999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhh
Q 043859 435 DEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGM 476 (484)
Q Consensus 435 ~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~ 476 (484)
|.+ +++++.++--++.++ .+...+.++++.+++
T Consensus 392 ~r~--~~~~~l~~~v~~~r~-------~~~~~~~~~~~~~~~ 424 (426)
T PRK10017 392 QLP--ALNARLAEAVSRERQ-------TGMQMVQSVLERIGE 424 (426)
T ss_pred CHH--HHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcc
Confidence 843 244443333333221 133355666666554
No 136
>PHA01633 putative glycosyl transferase group 1
Probab=94.23 E-value=0.74 Score=44.72 Aligned_cols=83 Identities=16% Similarity=0.058 Sum_probs=53.9
Q ss_pred ceEec---CCcch---hhhccCCCccccccc---cC-chhHHHHHhcCCceeeccc------cccc------chhHHHHH
Q 043859 345 GVVVP---QWAPQ---IDILSHPSVGGFLSH---CG-WNSTLESITNGVPMIVWPL------YSEQ------RMNATILT 402 (484)
Q Consensus 345 ~v~v~---~~ipq---~~vL~~~~~~~~ItH---gG-~gs~~eal~~GvP~v~~P~------~~DQ------~~na~rv~ 402 (484)
++.+. +++++ .++++.++ +|+.- =| -.+++||+++|+|+|+--. .+|+ .++..-.+
T Consensus 202 ~V~f~g~~G~~~~~dl~~~y~~aD--ifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~ 279 (335)
T PHA01633 202 NVHFVAEFGHNSREYIFAFYGAMD--FTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYY 279 (335)
T ss_pred cEEEEecCCCCCHHHHHHHHHhCC--EEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhc
Confidence 66665 44454 36788888 56643 24 4478999999999998633 2333 33333321
Q ss_pred h-hhcceEEeeecCCCCccCHHHHHHHHHHHhcc
Q 043859 403 E-ELGVAIRSKVLPSKGVVGREEIKTMVRRILVD 435 (484)
Q Consensus 403 ~-~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~ 435 (484)
. +.|.|..+ ...++++++++|.+++..
T Consensus 280 ~~~~g~g~~~------~~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 280 DKEHGQKWKI------HKFQIEDMANAIILAFEL 307 (335)
T ss_pred CcccCceeee------cCCCHHHHHHHHHHHHhc
Confidence 1 34666554 467999999999999654
No 137
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.19 E-value=0.28 Score=37.54 Aligned_cols=82 Identities=18% Similarity=0.130 Sum_probs=51.3
Q ss_pred ccCchhHHHHHhcCCceeecccccccchhHHHHHhhhc-ceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHH
Q 043859 369 HCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELG-VAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKE 447 (484)
Q Consensus 369 HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G-~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~ 447 (484)
+|-..-+.|++++|+|+|+-.. ......+ .-| -++.. . +.+++.++|..+++|+. ..++-+++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~--~~~~~~~~~------~--~~~el~~~i~~ll~~~~--~~~~ia~~ 72 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF--EDGEHIITY------N--DPEELAEKIEYLLENPE--ERRRIAKN 72 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc--CCCCeEEEE------C--CHHHHHHHHHHHHCCHH--HHHHHHHH
Confidence 5556689999999999998865 2222222 224 23332 2 89999999999999875 13333333
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHH
Q 043859 448 LQRSAQKAWTRESGSSYSSLARLA 471 (484)
Q Consensus 448 l~~~~~~a~~~~~g~~~~~~~~~~ 471 (484)
-++. + .+.-+..+.+++++
T Consensus 73 a~~~----v-~~~~t~~~~~~~il 91 (92)
T PF13524_consen 73 ARER----V-LKRHTWEHRAEQIL 91 (92)
T ss_pred HHHH----H-HHhCCHHHHHHHHH
Confidence 3333 4 44455666666665
No 138
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.07 E-value=2.8 Score=40.99 Aligned_cols=106 Identities=8% Similarity=-0.014 Sum_probs=68.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcC-CCeEEEEecCCCchhHHHHHhhhccCCCce-EEEecCCCCCCCCCCCCchHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLY-NFQVTIFVVASQTSAAESKILQSAMSSKLC-HVIEIPAPDISGLVDPDAAVV 86 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~ 86 (484)
||+++-..+.|++.=+..+.+.|+++. +.+|++++.+.+. ..++..| .+ +++.++.... .. ..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~-----~l~~~~p---~vd~vi~~~~~~~-----~~--~~ 65 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETI-----PILSENP---DINALYGLDRKKA-----KA--GE 65 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChH-----HHHhcCC---CccEEEEeChhhh-----cc--hH
Confidence 689999999999999999999999875 7899999998755 3455555 23 2344332110 00 00
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEE
Q 043859 87 TIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYV 136 (484)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~ 136 (484)
..+... . .+...+++. ++|++|.=........++...|.|.-+
T Consensus 66 ~~~~~~----~-~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 66 RKLANQ----F-HLIKVLRAN--RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HHHHHH----H-HHHHHHHhC--CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 011111 1 122334555 999999655455566788888999554
No 139
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.98 E-value=5.6 Score=37.54 Aligned_cols=102 Identities=14% Similarity=0.107 Sum_probs=63.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcC-CCeEEEEecCCCchhHHHHHhhhccCCCce-EEEecCCCCCCCCCCCCchHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLY-NFQVTIFVVASQTSAAESKILQSAMSSKLC-HVIEIPAPDISGLVDPDAAVV 86 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~ 86 (484)
||+++-..+.|++.-+..+.++|+++. +-+|++++.+... .+++..+ .+ +++.++... . ...
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~-----~l~~~~p---~id~v~~~~~~~---~---~~~-- 64 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFA-----PLLELMP---EVDRVIVLPKKH---G---KLG-- 64 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhH-----HHHhcCC---ccCEEEEcCCcc---c---ccc--
Confidence 689999999999999999999999974 5899999999755 3455554 22 233333211 0 000
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeE
Q 043859 87 TIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKY 135 (484)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v 135 (484)
+. ....+...+++. ++|+++.=........++...+++..
T Consensus 65 --~~-----~~~~~~~~l~~~--~~D~vi~~~~~~~~~~~~~~~~~~~~ 104 (279)
T cd03789 65 --LG-----ARRRLARALRRR--RYDLAIDLQGSLRSALLPFLAGAPRR 104 (279)
T ss_pred --hH-----HHHHHHHHHhhc--CCCEEEECCCccHHHHHHHHhCCCeE
Confidence 00 011222223334 89999865544444456666666644
No 140
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=93.72 E-value=0.2 Score=41.78 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=45.5
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhh
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQS 58 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (484)
|++++|++.+.++.+|-.-..-++..|+.+ |++|+++......+.+.+...+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~-G~eVi~LG~~vp~e~i~~~a~~~ 53 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEA-GFEVINLGVMTSQEEFIDAAIET 53 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHHHHHc
Confidence 578999999999999999999999999999 99999999887766655554443
No 141
>PRK14098 glycogen synthase; Provisional
Probab=93.23 E-value=1.9 Score=44.60 Aligned_cols=118 Identities=12% Similarity=-0.039 Sum_probs=68.7
Q ss_pred CceEecCCcchh---hhccCCCcccccccc---Cc-hhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCC
Q 043859 344 IGVVVPQWAPQI---DILSHPSVGGFLSHC---GW-NSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPS 416 (484)
Q Consensus 344 ~~v~v~~~ipq~---~vL~~~~~~~~ItHg---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 416 (484)
.++.+..+++.. .+++.++ +++.-. |. .+.+||+++|+|.|+....+-........ ++-+-|..++
T Consensus 362 ~~V~~~g~~~~~~~~~~~a~aD--i~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~-~~~~~G~l~~---- 434 (489)
T PRK14098 362 EQVSVQTEFTDAFFHLAIAGLD--MLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVS-EDKGSGFIFH---- 434 (489)
T ss_pred CCEEEEEecCHHHHHHHHHhCC--EEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCC-CCCCceeEeC----
Confidence 467776777653 5888999 455432 22 37789999999988876543211110111 2345677663
Q ss_pred CCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhhh
Q 043859 417 KGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGMM 477 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~~ 477 (484)
.-+++++.++|.+++...+ -++..++++ ++++ .+.-|-...++++++-.+++
T Consensus 435 --~~d~~~la~ai~~~l~~~~---~~~~~~~~~---~~~~-~~~fsw~~~a~~y~~lY~~~ 486 (489)
T PRK14098 435 --DYTPEALVAKLGEALALYH---DEERWEELV---LEAM-ERDFSWKNSAEEYAQLYREL 486 (489)
T ss_pred --CCCHHHHHHHHHHHHHHHc---CHHHHHHHH---HHHh-cCCCChHHHHHHHHHHHHHH
Confidence 4578999999998774211 011122222 2334 55566666777776665554
No 142
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.94 E-value=0.59 Score=40.15 Aligned_cols=100 Identities=13% Similarity=0.003 Sum_probs=51.7
Q ss_pred CccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHh
Q 043859 17 GVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREI 96 (484)
Q Consensus 17 ~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (484)
..|=-.-+..|+++|+++ ||+|++++....... .. . ........... ........+ ..
T Consensus 11 ~GG~e~~~~~l~~~l~~~-G~~v~v~~~~~~~~~--------~~---~-~~~~~~~~~~~----~~~~~~~~~-----~~ 68 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKR-GHEVTVVSPGVKDPI--------EE---E-LVKIFVKIPYP----IRKRFLRSF-----FF 68 (177)
T ss_dssp SSHHHHHHHHHHHHHHHT-T-EEEEEESS-TTS---------SS---T-EEEE---TT-S----STSS--HHH-----HH
T ss_pred CChHHHHHHHHHHHHHHC-CCEEEEEEcCCCccc--------hh---h-ccceeeeeecc----cccccchhH-----HH
Confidence 455667789999999999 999999988743211 11 1 11111110000 001111111 12
Q ss_pred hHHHHHHHHhcCCCCeEEEeCCch-hhHHHHHHHhCCCeEEEeccc
Q 043859 97 KPAFRSAISALKTTPTALIVDLFG-TESLAIAEELQIPKYVYVGTN 141 (484)
Q Consensus 97 ~~~l~~~l~~~~~~pD~VI~D~~~-~~~~~~A~~lgIP~v~~~~~~ 141 (484)
...+..++++. +||+|-+.... .+....+.. ++|.+......
T Consensus 69 ~~~~~~~i~~~--~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~ 111 (177)
T PF13439_consen 69 MRRLRRLIKKE--KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGP 111 (177)
T ss_dssp HHHHHHHHHHH--T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HH
T ss_pred HHHHHHHHHHc--CCCeEEecccchhHHHHHhcc-CCCEEEEeCCC
Confidence 35677888888 99999544332 233333334 99988876543
No 143
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=92.79 E-value=10 Score=36.90 Aligned_cols=102 Identities=16% Similarity=0.139 Sum_probs=66.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcC-CCeEEEEecCCCchhHHHHHhhhccCCCceE-EEecCCCCCCCCCCCCchHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLY-NFQVTIFVVASQTSAAESKILQSAMSSKLCH-VIEIPAPDISGLVDPDAAVV 86 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~ 86 (484)
||+++-..+.|++.=+..+.+.|++.. +.+|+|++.+.+. .+++..| .++ ++.++.. ... .
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~-----~l~~~~p---~id~v~~~~~~-------~~~--~ 63 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCR-----PLLERMP---EIRQAIDMPLG-------HGA--L 63 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhH-----HHHhcCc---hhceeeecCCc-------ccc--h
Confidence 689999999999999999999999875 8999999987643 4455555 222 2332221 000 0
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeE
Q 043859 87 TIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKY 135 (484)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v 135 (484)
.+. ....+...+++. ++|++|.-....-...++...++|.-
T Consensus 64 -~~~-----~~~~~~~~lr~~--~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 64 -ELT-----ERRRLGRSLREE--RYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred -hhh-----HHHHHHHHHhhc--CCCEEEECCCCHHHHHHHHHcCCCce
Confidence 011 111233445555 99999976555556677777888854
No 144
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=92.18 E-value=1.9 Score=39.99 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=31.1
Q ss_pred CCCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 4 SSSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 4 ~~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
+.++||||+..=-+.- ---+.+|+++|.+. | +|+++.+...+
T Consensus 2 ~~~~M~ILltNDDGi~-a~Gi~aL~~~l~~~-g-~V~VvAP~~~~ 43 (257)
T PRK13932 2 QDKKPHILVCNDDGIE-GEGIHVLAASMKKI-G-RVTVVAPAEPH 43 (257)
T ss_pred CCCCCEEEEECCCCCC-CHHHHHHHHHHHhC-C-CEEEEcCCCCC
Confidence 3467999988765442 24678899999987 7 79888888654
No 145
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=92.18 E-value=0.97 Score=41.49 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=60.7
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCC--CCCCCCCCCCchH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPA--PDISGLVDPDAAV 85 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~ 85 (484)
|||++..=-+ =|---..+|++.|+ . +++|+++.++..+.-...++--..| ++...+.. ..+.+. |
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~-~~dV~VVAP~~~qSg~s~slTl~~P----lr~~~~~~~~~av~GT-P----- 67 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-E-GADVTVVAPDREQSGASHSLTLHEP----LRVRQVDNGAYAVNGT-P----- 67 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-h-CCCEEEEccCCCCcccccccccccC----ceeeEeccceEEecCC-h-----
Confidence 5666655433 24555778899998 7 8999999999765322122211222 33333222 111111 1
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeC----------Cch---hhHHHHHHHhCCCeEEEec
Q 043859 86 VTIISVIMREIKPAFRSAISALKTTPTALIVD----------LFG---TESLAIAEELQIPKYVYVG 139 (484)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D----------~~~---~~~~~~A~~lgIP~v~~~~ 139 (484)
.+. ..-.+..++++. .||+||+. ..+ .+++.=|..+|||.|.++.
T Consensus 68 ----aDC---V~lal~~l~~~~--~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~ 125 (252)
T COG0496 68 ----ADC---VILGLNELLKEP--RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISL 125 (252)
T ss_pred ----HHH---HHHHHHHhccCC--CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeee
Confidence 111 223455666555 79999864 223 3344455668999999874
No 146
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=90.96 E-value=4.9 Score=34.88 Aligned_cols=119 Identities=22% Similarity=0.208 Sum_probs=60.8
Q ss_pred EEcCCCccChHHHHHHHHHH-HhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHH
Q 043859 12 LLASPGVGHVIPVLELGKRL-VTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIIS 90 (484)
Q Consensus 12 ~~~~p~~GHv~P~l~La~~L-~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 90 (484)
++..++-||+.=|+.|.+.+ .++..++..+++.......-...-++.... ....+..+|....- .......+.
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~-~~~~~~~~~r~r~v-----~q~~~~~~~ 75 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSS-KRHKILEIPRAREV-----GQSYLTSIF 75 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcc-ccceeeccceEEEe-----chhhHhhHH
Confidence 34567889999999999999 333145555555554332211111122110 11133444421100 111122223
Q ss_pred HHHHHhhHHHHHHHHhcCCCCeEEEeCCchh--hHHHHHHHh------CCCeEEEec
Q 043859 91 VIMREIKPAFRSAISALKTTPTALIVDLFGT--ESLAIAEEL------QIPKYVYVG 139 (484)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~--~~~~~A~~l------gIP~v~~~~ 139 (484)
..+......+.-+ .+. +||+||+..-.. ....+|..+ |.+.|.+-+
T Consensus 76 ~~l~~~~~~~~il-~r~--rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 76 TTLRAFLQSLRIL-RRE--RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HHHHHHHHHHHHH-HHh--CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 3333333333333 334 899999885433 344688888 999887664
No 147
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=89.93 E-value=1.2 Score=38.50 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=24.7
Q ss_pred CCCCeEEEeCCchhhHHHHHHHh-CCCeEEEec
Q 043859 108 KTTPTALIVDLFGTESLAIAEEL-QIPKYVYVG 139 (484)
Q Consensus 108 ~~~pD~VI~D~~~~~~~~~A~~l-gIP~v~~~~ 139 (484)
.-.||+||...-...+.-+-+.+ +.|.+.++-
T Consensus 64 Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 33899999997666666678888 899888653
No 148
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=89.16 E-value=0.87 Score=36.83 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=39.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhh
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQ 57 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (484)
||++.+.++..|.....-++..|++. |++|++.......+.+.+...+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~-G~~V~~lg~~~~~~~l~~~~~~ 48 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDA-GFEVIDLGVDVPPEEIVEAAKE 48 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999999999 9999998866544444444433
No 149
>PHA01630 putative group 1 glycosyl transferase
Probab=88.96 E-value=1.2 Score=43.46 Aligned_cols=111 Identities=11% Similarity=-0.010 Sum_probs=58.5
Q ss_pred Ccchh---hhccCCCccccccc-cC-chhHHHHHhcCCceeeccccc--ccc---hhHHHHHh-----------hhcceE
Q 043859 351 WAPQI---DILSHPSVGGFLSH-CG-WNSTLESITNGVPMIVWPLYS--EQR---MNATILTE-----------ELGVAI 409 (484)
Q Consensus 351 ~ipq~---~vL~~~~~~~~ItH-gG-~gs~~eal~~GvP~v~~P~~~--DQ~---~na~rv~~-----------~~G~g~ 409 (484)
++|.. ++++.+++-++-++ .| -.++.||+++|+|+|+.-..+ |.- .|...+ + -.++|.
T Consensus 197 ~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~~G~ 275 (331)
T PHA01630 197 PLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIHVGY 275 (331)
T ss_pred cCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCccccc
Confidence 35543 46888884222122 32 458999999999999976533 221 121111 0 023454
Q ss_pred EeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHH
Q 043859 410 RSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKEC 474 (484)
Q Consensus 410 ~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~ 474 (484)
.+. .+.+++.+++.++|.|.+-+.++++.++-+... .+..+-...++++.+-+
T Consensus 276 ~v~-------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~-----~~~fs~~~ia~k~~~l~ 328 (331)
T PHA01630 276 FLD-------PDIEDAYQKLLEALANWTPEKKKENLEGRAILY-----RENYSYNAIAKMWEKIL 328 (331)
T ss_pred ccC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-----HHhCCHHHHHHHHHHHH
Confidence 432 367888899999998742112444333333322 23344444555554443
No 150
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=88.94 E-value=24 Score=34.39 Aligned_cols=105 Identities=19% Similarity=0.123 Sum_probs=68.6
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcC-CCeEEEEecCCCchhHHHHHhhhccCCCceEE-EecCCCCCCCCCCCCch
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLY-NFQVTIFVVASQTSAAESKILQSAMSSKLCHV-IEIPAPDISGLVDPDAA 84 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~ 84 (484)
.|+|+++-....|++.=.+.+-+.|+++. +.+++|++.+.+.+ +++..| .++- +.+.. ....
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~-----i~~~~p---~I~~vi~~~~--------~~~~ 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAP-----ILKLNP---EIDKVIIIDK--------KKKG 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHH-----HHhcCh---Hhhhhccccc--------cccc
Confidence 47999999999999999999999999986 79999999997653 344444 1211 11010 0000
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEE
Q 043859 85 VVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYV 136 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~ 136 (484)
........+...+++. ++|+||.=....=...++..+++|.-.
T Consensus 65 -------~~~~~~~~l~~~lr~~--~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 -------LGLKERLALLRTLRKE--RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred -------cchHHHHHHHHHhhcc--CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0011122344455555 899999766566566777788888554
No 151
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.88 E-value=1.2 Score=41.56 Aligned_cols=89 Identities=18% Similarity=0.133 Sum_probs=57.4
Q ss_pred ecCCcchhhhccCCCccccccccCchhHHHHHhcCCceeecccccccch--hHHHHHhhhcceEEeeecCCCCccCHHHH
Q 043859 348 VPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRM--NATILTEELGVAIRSKVLPSKGVVGREEI 425 (484)
Q Consensus 348 v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~--na~rv~~~~G~g~~l~~~~~~~~~~~~~l 425 (484)
+..|-.+.++|.+++ +.|--.|- .+-+++-.|||+|.+|-.+-|+. -|.|-.+-+|+.+.+-. .+.+.
T Consensus 299 ~lsqqsfadiLH~ad--aalgmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-------~~aq~ 368 (412)
T COG4370 299 WLSQQSFADILHAAD--AALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-------PEAQA 368 (412)
T ss_pred EEeHHHHHHHHHHHH--HHHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-------Cchhh
Confidence 335666678888888 56655543 34457889999999999999965 44443344577776642 23334
Q ss_pred HHHHHH-HhcccchHHHHHHHHHHH
Q 043859 426 KTMVRR-ILVDEEGYEIRAKVKELQ 449 (484)
Q Consensus 426 ~~~i~~-vl~~~~~~~~~~~a~~l~ 449 (484)
.+.+.+ +|.|+. +.++++.-.
T Consensus 369 a~~~~q~ll~dp~---r~~air~nG 390 (412)
T COG4370 369 AAQAVQELLGDPQ---RLTAIRHNG 390 (412)
T ss_pred HHHHHHHHhcChH---HHHHHHhcc
Confidence 444444 899987 666665433
No 152
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=88.41 E-value=4.8 Score=37.30 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=27.1
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
||||+..=-+. |---+.+|+++|.+ +|+|+++.+...+
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~--~~~V~VvAP~~~~ 38 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK--YHEVIIVAPENQR 38 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh--CCcEEEEccCCCC
Confidence 67777765444 33348889999964 5899999888655
No 153
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=88.18 E-value=5.4 Score=37.17 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=28.4
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
||||+..=-+. |---+.+|+++|.+. | +|+++.+...+
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~-g-~V~VvAP~~eq 38 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPL-G-EVDVVAPETPK 38 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhC-C-cEEEEccCCCC
Confidence 57777665554 446688999999887 7 79988887654
No 154
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=87.46 E-value=9 Score=36.16 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=70.0
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhh------hccCCCceEEEecCCCCCCCC
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQ------SAMSSKLCHVIEIPAPDISGL 78 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~p~~~~~~~ 78 (484)
.+..+|.|.-.|+.|--.=.=.|.+.|.++ ||+|-++...+...+-.-+++. .....+++-+.++|....
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~-G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~--- 124 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRER-GHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGT--- 124 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHC-CcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCcc---
Confidence 455689999999999999999999999999 9999999988766431111111 111112333333332111
Q ss_pred CCCCchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHH---HHHHHhCCCeEE
Q 043859 79 VDPDAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESL---AIAEELQIPKYV 136 (484)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~---~~A~~lgIP~v~ 136 (484)
..-+.......-.+|+.. .+|+||.+-.-. +. .+++...+=.+.
T Consensus 125 -----------lGGlS~at~~~i~~ldAa--G~DvIIVETVGv-GQsev~I~~~aDt~~~v 171 (323)
T COG1703 125 -----------LGGLSRATREAIKLLDAA--GYDVIIVETVGV-GQSEVDIANMADTFLVV 171 (323)
T ss_pred -----------chhhhHHHHHHHHHHHhc--CCCEEEEEecCC-CcchhHHhhhcceEEEE
Confidence 111222334566778888 999999994333 32 355555544443
No 155
>PLN02939 transferase, transferring glycosyl groups
Probab=87.09 E-value=11 Score=41.59 Aligned_cols=117 Identities=13% Similarity=0.052 Sum_probs=67.8
Q ss_pred CceEecCCcchh---hhccCCCcccccccc---C-chhHHHHHhcCCceeeccccc--ccchh--HHHHHhhhcceEEee
Q 043859 344 IGVVVPQWAPQI---DILSHPSVGGFLSHC---G-WNSTLESITNGVPMIVWPLYS--EQRMN--ATILTEELGVAIRSK 412 (484)
Q Consensus 344 ~~v~v~~~ipq~---~vL~~~~~~~~ItHg---G-~gs~~eal~~GvP~v~~P~~~--DQ~~n--a~rv~~~~G~g~~l~ 412 (484)
++|.+..+.+.. .+++.++ +|+.-. | -.+.+||+++|+|.|+....+ |--.+ ...+.++-+-|..+.
T Consensus 837 drV~FlG~~de~lah~IYAaAD--IFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~ 914 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASD--MFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL 914 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCC--EEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec
Confidence 467776777653 5899999 566432 2 348899999999999876544 22111 111111234566653
Q ss_pred ecCCCCccCHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhhhh
Q 043859 413 VLPSKGVVGREEIKTMVRRILV----DEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGMMT 478 (484)
Q Consensus 413 ~~~~~~~~~~~~l~~~i~~vl~----~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~ 478 (484)
..+++.+.++|.+++. |+. .+ ++|++ .++ ...-|-...++++++-..++.
T Consensus 915 ------~~D~eaLa~AL~rAL~~~~~dpe---~~---~~L~~---~am-~~dFSWe~~A~qYeeLY~~ll 968 (977)
T PLN02939 915 ------TPDEQGLNSALERAFNYYKRKPE---VW---KQLVQ---KDM-NIDFSWDSSASQYEELYQRAV 968 (977)
T ss_pred ------CCCHHHHHHHHHHHHHHhccCHH---HH---HHHHH---HHH-HhcCCHHHHHHHHHHHHHHHH
Confidence 3588899999988875 332 22 22222 223 344555566666665555443
No 156
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=86.96 E-value=3 Score=38.63 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=27.4
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
||||+..=-+. |---+.+|+++|. . +|+|+++.+...+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~-~-~~~V~VvAP~~~q 38 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLS-E-KHEVFVVAPDKER 38 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHH-h-CCcEEEEccCCCC
Confidence 67777765544 3445788999996 4 5899999888654
No 157
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=86.66 E-value=6.3 Score=36.39 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=26.9
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
||||+..=-+. |---+.+|+++|.+. | +|+++.+...+
T Consensus 1 M~ILltNDDGi-~a~Gi~aL~~~l~~~-g-~V~VvAP~~~~ 38 (244)
T TIGR00087 1 MKILLTNDDGI-HSPGIRALYQALKEL-G-EVTVVAPARQR 38 (244)
T ss_pred CeEEEECCCCC-CCHhHHHHHHHHHhC-C-CEEEEeCCCCc
Confidence 56666554332 334578899999988 7 89988888654
No 158
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=86.04 E-value=9.1 Score=37.52 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=68.1
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcC-CCeEEEEecCCCchhHHHHHhhhccCCCceE-EEecCCCCCCCCCCCCchH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLY-NFQVTIFVVASQTSAAESKILQSAMSSKLCH-VIEIPAPDISGLVDPDAAV 85 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~ 85 (484)
|||+++-..+.|++.=+..+.+.|+++. +.+|+|++.+.+. .+++..| .++ ++.++.. .. .
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~-----~l~~~~P---~vd~vi~~~~~-------~~--~ 63 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCR-----PLLSRMP---EVNEAIPMPLG-------HG--A 63 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhH-----HHHhcCC---ccCEEEecccc-------cc--h
Confidence 6899999999999999999999999965 8999999988654 4456555 232 2222221 00 0
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEE
Q 043859 86 VTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYV 136 (484)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~ 136 (484)
. .+. ....+...+++- ++|++|.=....-...++...|+|.-+
T Consensus 64 ~-~~~-----~~~~l~~~lr~~--~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 64 L-EIG-----ERRRLGHSLREK--RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred h-hhH-----HHHHHHHHHHhc--CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0 010 111233445555 999999654455566777788888544
No 159
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=85.43 E-value=1.8 Score=44.93 Aligned_cols=90 Identities=12% Similarity=0.094 Sum_probs=63.5
Q ss_pred CceEecCCcc--h-hhhccCCCcccccccc---CchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCC
Q 043859 344 IGVVVPQWAP--Q-IDILSHPSVGGFLSHC---GWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSK 417 (484)
Q Consensus 344 ~~v~v~~~ip--q-~~vL~~~~~~~~ItHg---G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 417 (484)
..|.+.++.. + ..+|.++. ++|.=+ |.++..||+.+|+|+| .+.....| ++..=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEeC-----
Confidence 3677777777 4 45888888 677655 7789999999999999 33344454 3444454442
Q ss_pred CccCHHHHHHHHHHHhcccc-hHHHHHHHHHHHHH
Q 043859 418 GVVGREEIKTMVRRILVDEE-GYEIRAKVKELQRS 451 (484)
Q Consensus 418 ~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~ 451 (484)
+..+|.++|..+|.+.+ ++.+...+-+.+..
T Consensus 474 ---d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~ 505 (519)
T TIGR03713 474 ---DISELLKALDYYLDNLKNWNYSLAYSIKLIDD 505 (519)
T ss_pred ---CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 78899999999999864 55566665555544
No 160
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=85.28 E-value=7.5 Score=35.98 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=27.7
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
||||+..=-+. |---+.+|+++|.+. |+|+++.+...+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~--~~V~VvAP~~~q 38 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL--ADVTVVAPDRER 38 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC--CCEEEEeCCCCC
Confidence 57777665444 345578899999876 689998888654
No 161
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=84.59 E-value=16 Score=35.91 Aligned_cols=107 Identities=8% Similarity=-0.001 Sum_probs=68.4
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcC-CCeEEEEecCCCchhHHHHHhhhccCCCce-EEEecCCCCCCCCCCCCch
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLY-NFQVTIFVVASQTSAAESKILQSAMSSKLC-HVIEIPAPDISGLVDPDAA 84 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~ 84 (484)
.|||+++-....|++.=+..+.+.|+++. +.+|++++.+.+. .+++..| .+ +++.++... . .
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~-----~l~~~~P---~id~vi~~~~~~-------~-~ 68 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTI-----PILSENP---EINALYGIKNKK-------A-G 68 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChH-----HHhccCC---CceEEEEecccc-------c-c
Confidence 57899999999999999999999999876 8999999998765 3455555 23 233333210 0 0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEE
Q 043859 85 VVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYV 136 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~ 136 (484)
....+. . .-.+...+++. ++|++|.=....-...++...|.|..+
T Consensus 69 ~~~~~~----~-~~~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 69 ASEKIK----N-FFSLIKVLRAN--KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred HHHHHH----H-HHHHHHHHhhC--CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 000111 1 11222334444 999999654444455677777888654
No 162
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=84.44 E-value=13 Score=33.90 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=25.0
Q ss_pred CCCCeEEE-eCCch-hhHHHHHHHhCCCeEEEecccH
Q 043859 108 KTTPTALI-VDLFG-TESLAIAEELQIPKYVYVGTNA 142 (484)
Q Consensus 108 ~~~pD~VI-~D~~~-~~~~~~A~~lgIP~v~~~~~~~ 142 (484)
..-||+++ .|+.. --+..=|.++|||+|.+.-+++
T Consensus 154 ~~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 154 KGLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred cCCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 34599876 66543 3445678999999999886665
No 163
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=84.43 E-value=30 Score=30.96 Aligned_cols=149 Identities=8% Similarity=-0.033 Sum_probs=78.8
Q ss_pred CCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceE
Q 043859 268 SESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVV 347 (484)
Q Consensus 268 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~ 347 (484)
.+.++.|..|. .....++.|...+..+.++- .. ..+.+.+......+.
T Consensus 10 ~k~vLVIGgG~-------va~~ka~~Ll~~ga~V~VIs-~~------------------------~~~~l~~l~~~~~i~ 57 (202)
T PRK06718 10 NKRVVIVGGGK-------VAGRRAITLLKYGAHIVVIS-PE------------------------LTENLVKLVEEGKIR 57 (202)
T ss_pred CCEEEEECCCH-------HHHHHHHHHHHCCCeEEEEc-CC------------------------CCHHHHHHHhCCCEE
Confidence 45688887773 33445556666676655442 11 112233322223344
Q ss_pred ecCCcchhhhccCCCccccccccCchhHHHHHh----cCCceeecccccccchhHHHH----HhhhcceEEeeecCCCCc
Q 043859 348 VPQWAPQIDILSHPSVGGFLSHCGWNSTLESIT----NGVPMIVWPLYSEQRMNATIL----TEELGVAIRSKVLPSKGV 419 (484)
Q Consensus 348 v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv----~~~~G~g~~l~~~~~~~~ 419 (484)
......+.+-+..++ ++|.--+...+++.++ .++++-+ .|.+..+..+ .++-++-+.+.+... .-
T Consensus 58 ~~~~~~~~~~l~~ad--lViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~-sP 130 (202)
T PRK06718 58 WKQKEFEPSDIVDAF--LVIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRGKLTISVSTDGA-SP 130 (202)
T ss_pred EEecCCChhhcCCce--EEEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcCCeEEEEECCCC-Ch
Confidence 434334455677788 7888777777777765 3444333 3444333221 122233333332100 12
Q ss_pred cCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh
Q 043859 420 VGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAW 456 (484)
Q Consensus 420 ~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~ 456 (484)
.-+..|++.|++.+.. +...+.+.+.++++.+++.+
T Consensus 131 ~la~~lr~~ie~~~~~-~~~~~~~~~~~~R~~~k~~~ 166 (202)
T PRK06718 131 KLAKKIRDELEALYDE-SYESYIDFLYECRQKIKELQ 166 (202)
T ss_pred HHHHHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHhC
Confidence 2335688888887733 33458888888888877533
No 164
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=83.90 E-value=13 Score=35.32 Aligned_cols=80 Identities=14% Similarity=0.223 Sum_probs=56.2
Q ss_pred CceE-ecCCcc---hhhhccCCCccccccc--cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCC
Q 043859 344 IGVV-VPQWAP---QIDILSHPSVGGFLSH--CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSK 417 (484)
Q Consensus 344 ~~v~-v~~~ip---q~~vL~~~~~~~~ItH--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 417 (484)
+++. +.+++| +.++|++++++.|+|+ =|.|+++-.|+.|||+++- .+=+.+... .+.|+-+-.+.
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl--~e~gv~Vlf~~---- 276 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDL--TEQGLPVLFTG---- 276 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHH--HhCCCeEEecC----
Confidence 3544 446776 4579999999777775 5899999999999999986 344445443 25677765442
Q ss_pred CccCHHHHHHHHHHH
Q 043859 418 GVVGREEIKTMVRRI 432 (484)
Q Consensus 418 ~~~~~~~l~~~i~~v 432 (484)
+.++...++++=+++
T Consensus 277 d~L~~~~v~e~~rql 291 (322)
T PRK02797 277 DDLDEDIVREAQRQL 291 (322)
T ss_pred CcccHHHHHHHHHHH
Confidence 678887777764444
No 165
>PRK05973 replicative DNA helicase; Provisional
Probab=83.79 E-value=11 Score=34.58 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=39.9
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHH
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKI 55 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~ 55 (484)
.--+++..-|+.|-..-.+.++....++ |..|.|++.+...+.+.+..
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHHHHHHH
Confidence 3456777788999999999999999888 99999999998876655554
No 166
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=83.63 E-value=13 Score=35.98 Aligned_cols=82 Identities=13% Similarity=0.184 Sum_probs=59.6
Q ss_pred CceEe-cCCcch---hhhccCCCccccccc--cCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCC
Q 043859 344 IGVVV-PQWAPQ---IDILSHPSVGGFLSH--CGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSK 417 (484)
Q Consensus 344 ~~v~v-~~~ipq---~~vL~~~~~~~~ItH--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 417 (484)
.++.+ .+++|. .++|..|+++.|++. =|.|+++-.|+.|+|+++- .+=+.+ .-+ .+.|+-+... +
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~-~~l-~~~~ipVlf~----~ 315 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFW-QDL-KEQGIPVLFY----G 315 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHH-HHH-HhCCCeEEec----c
Confidence 46654 578875 568999998776664 5999999999999999975 344444 334 3567766544 2
Q ss_pred CccCHHHHHHHHHHHhc
Q 043859 418 GVVGREEIKTMVRRILV 434 (484)
Q Consensus 418 ~~~~~~~l~~~i~~vl~ 434 (484)
+.++...|+++=+++..
T Consensus 316 d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 316 DELDEALVREAQRQLAN 332 (360)
T ss_pred ccCCHHHHHHHHHHHhh
Confidence 78999999988877754
No 167
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=83.59 E-value=2.1 Score=34.59 Aligned_cols=40 Identities=8% Similarity=-0.034 Sum_probs=29.1
Q ss_pred CeEEEEcCCCcc---ChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 8 PHAVLLASPGVG---HVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 8 ~~il~~~~p~~G---Hv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
|||+|+.-|-.+ .-.-+++|+.+.++| ||+|.++......
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~R-Ghev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRR-GHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHT-T-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHC-CCEEEEEEcCcEE
Confidence 788888888665 456789999999999 9999999988543
No 168
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=83.03 E-value=7.7 Score=37.52 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=37.3
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcC-CCeEEEEecCCCc
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLY-NFQVTIFVVASQT 48 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~-Gh~Vt~~~~~~~~ 48 (484)
|||+++-..+.|++.=+.++.+.|++.. +.+|||++.+.+.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~ 42 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFA 42 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHH
Confidence 6999999999999999999999999865 8999999988654
No 169
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=82.18 E-value=5.8 Score=35.14 Aligned_cols=42 Identities=29% Similarity=0.378 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCC
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQ 47 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~ 47 (484)
..+++|.|-..|+-|-.+.|+.=|++|+++ |.+|++...+..
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~-G~DVViG~veth 44 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQ-GVDVVIGYVETH 44 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEE---T
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHC-CCCEEEEEecCC
Confidence 357899999999999999999999999999 999998777644
No 170
>PRK08506 replicative DNA helicase; Provisional
Probab=81.99 E-value=13 Score=38.20 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=41.3
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhh
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQS 58 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (484)
.-=+++..-|+.|-..-.+.+|....+. |+.|.|++-+-....+..+++..
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~-g~~V~~fSlEMs~~ql~~Rlla~ 242 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQ-DKGVAFFSLEMPAEQLMLRMLSA 242 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhc-CCcEEEEeCcCCHHHHHHHHHHH
Confidence 3356777889999999999999999888 99999999997776666555443
No 171
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=81.98 E-value=8.2 Score=39.46 Aligned_cols=102 Identities=13% Similarity=0.069 Sum_probs=66.0
Q ss_pred CCcchh---hhccCCCcccccc---ccCch-hHHHHHhcCCc----eeecccccccchhHHHHHhhhcceEEeeecCCCC
Q 043859 350 QWAPQI---DILSHPSVGGFLS---HCGWN-STLESITNGVP----MIVWPLYSEQRMNATILTEELGVAIRSKVLPSKG 418 (484)
Q Consensus 350 ~~ipq~---~vL~~~~~~~~It---HgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~ 418 (484)
..+++. +++..+++ ++. +-|+| ++.|++++|+| +|+--.. ..+..+ +-|+.++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~----G~~~~l----~~gllVn------ 405 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFA----GAAQEL----NGALLVN------ 405 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCC----CChHHh----CCcEEEC------
Confidence 455554 46888995 443 44644 78899999999 5554333 222222 3466664
Q ss_pred ccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHH
Q 043859 419 VVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKEC 474 (484)
Q Consensus 419 ~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~ 474 (484)
..+.++++++|.++|+.+.. +.+++.+++++.+. . -+...-++.++.++
T Consensus 406 P~d~~~lA~aI~~aL~~~~~-er~~r~~~~~~~v~----~--~~~~~W~~~~l~~l 454 (456)
T TIGR02400 406 PYDIDGMADAIARALTMPLE-EREERHRAMMDKLR----K--NDVQRWREDFLSDL 454 (456)
T ss_pred CCCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHh----h--CCHHHHHHHHHHHh
Confidence 35889999999999986542 36666666666633 1 45666777777765
No 172
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=81.93 E-value=35 Score=30.14 Aligned_cols=105 Identities=12% Similarity=0.043 Sum_probs=64.0
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc-hhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCch
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT-SAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAA 84 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 84 (484)
.+=.|.+.+..+.|-....+.+|-+.... |++|.++..-... ..=+...++..+ ++.+.......... ....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~-G~~V~ivQFlKg~~~~GE~~~l~~l~---~v~~~~~g~~~~~~--~~~~- 93 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH-GKKVGVVQFIKGAWSTGERNLLEFGG---GVEFHVMGTGFTWE--TQDR- 93 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCCccCHHHHHhcCC---CcEEEECCCCCccc--CCCc-
Confidence 45589999999999999999999999998 9999998754322 111223333333 57777665421111 1111
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchh
Q 043859 85 VVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGT 121 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~ 121 (484)
..-....+......++.+.+- .+|+||.|....
T Consensus 94 --~e~~~~~~~~~~~a~~~l~~~--~ydlvVLDEi~~ 126 (191)
T PRK05986 94 --ERDIAAAREGWEEAKRMLADE--SYDLVVLDELTY 126 (191)
T ss_pred --HHHHHHHHHHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 111223333344444555444 999999997655
No 173
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=81.58 E-value=4.1 Score=35.27 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=30.4
Q ss_pred HHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHH-H--H-HHH-h-CCCeEEEec
Q 043859 92 IMREIKPAFRSAISALKTTPTALIVDLFGTESL-A--I-AEE-L-QIPKYVYVG 139 (484)
Q Consensus 92 ~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~-~--~-A~~-l-gIP~v~~~~ 139 (484)
......+.+.+++++. +||+||+-..++... . + .+. + ++|.+.+.+
T Consensus 73 ~~~~~~~~l~~~l~~~--~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 73 LSRLFARRLIRLLREF--QPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHHHHHhhc--CCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 3444556788888988 999999986554333 2 1 122 4 588777665
No 174
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=81.20 E-value=7.2 Score=34.65 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=58.9
Q ss_pred cChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHhhH
Q 043859 19 GHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKP 98 (484)
Q Consensus 19 GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (484)
-++.-.+.+.+.+.++ |-+|.|+++.+....+.+......+ ..+..-. -..+.+..-......+..+......
T Consensus 40 ~~L~~A~~~i~~i~~~-~g~iLfV~t~~~~~~~v~~~a~~~~----~~~i~~r--w~~G~LTN~~~~~~~~~~~~~~~~~ 112 (193)
T cd01425 40 EKLRLALNFIANIAAK-GGKILFVGTKPQAQRAVKKFAERTG----SFYVNGR--WLGGTLTNWKTIRKSIKRLKKLEKE 112 (193)
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHHcC----CeeecCe--ecCCcCCCHHHHHHHHHHHHHHHHH
Confidence 3445556666777787 8999999999765555554444433 2221110 0111111111111111111000002
Q ss_pred HHHHHHHhc---CCCCeEEE-eCCc-hhhHHHHHHHhCCCeEEEecccH
Q 043859 99 AFRSAISAL---KTTPTALI-VDLF-GTESLAIAEELQIPKYVYVGTNA 142 (484)
Q Consensus 99 ~l~~~l~~~---~~~pD~VI-~D~~-~~~~~~~A~~lgIP~v~~~~~~~ 142 (484)
.++..+..+ ...||+|| .|+. ...+..=|.++|||+|.+.-+.+
T Consensus 113 ~~~k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 113 KLEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred HHHHhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 222222222 45899987 4543 33455688899999999886553
No 175
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=80.56 E-value=4.5 Score=36.21 Aligned_cols=51 Identities=16% Similarity=0.021 Sum_probs=41.9
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhh
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQ 57 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (484)
++.+|++.+.++..|-....-++..|+.. |++|+++......+.+.+...+
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~-G~~vi~lG~~~p~~~l~~~~~~ 131 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEAN-GFEVIDLGRDVPPEEFVEAVKE 131 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999999999999 9999999876555554444433
No 176
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=80.17 E-value=11 Score=33.27 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=50.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcC-CCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLY-NFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
.++-+-..+.|-++-...|+++|.+++ |+.|.+-++...-....... .+ ..+...-+|. |
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~---~~--~~v~~~~~P~---D----------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKL---LP--DRVDVQYLPL---D----------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG----G--GG-SEEE------S-----------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHh---CC--CCeEEEEeCc---c-----------
Confidence 455566778999999999999999864 78888877755432211111 12 1122222332 1
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHH--HHHHHhCCCeEEEec
Q 043859 88 IISVIMREIKPAFRSAISALKTTPTALIVDLFGTESL--AIAEELQIPKYVYVG 139 (484)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~--~~A~~lgIP~v~~~~ 139 (484)
....++..++.+ +||++|.-....|.. ..|++.|||++.+..
T Consensus 83 --------~~~~~~rfl~~~--~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 --------FPWAVRRFLDHW--RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp --------SHHHHHHHHHHH----SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred --------CHHHHHHHHHHh--CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 112456788889 999988655555444 578889999888753
No 177
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=79.35 E-value=9 Score=32.70 Aligned_cols=100 Identities=17% Similarity=0.244 Sum_probs=62.8
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCC--CCc
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVD--PDA 83 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~ 83 (484)
..|+|.+.-.|+.|-..-.+.++..|.++ |+.|-=+.+++-++ +-.-.+ |+.+++....-..+.. .+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t~EVR~-----gGkR~G----F~Ivdl~tg~~~~la~~~~~~ 73 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFITPEVRE-----GGKRIG----FKIVDLATGEEGILARVGFSR 73 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEeeeeec-----CCeEee----eEEEEccCCceEEEEEcCCCC
Confidence 36899999999999999999999999999 99998777765431 112233 7777776422111100 000
Q ss_pred hHHHH----HHHHHHHhhHHHHHHHHhcCCCCeEEEeCCc
Q 043859 84 AVVTI----ISVIMREIKPAFRSAISALKTTPTALIVDLF 119 (484)
Q Consensus 84 ~~~~~----~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~ 119 (484)
-.... ...+-+...+.++..++ ..|+||.|..
T Consensus 74 ~rvGkY~V~v~~le~i~~~al~rA~~----~aDvIIIDEI 109 (179)
T COG1618 74 PRVGKYGVNVEGLEEIAIPALRRALE----EADVIIIDEI 109 (179)
T ss_pred cccceEEeeHHHHHHHhHHHHHHHhh----cCCEEEEecc
Confidence 00001 12333345666666665 4699999954
No 178
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=79.25 E-value=25 Score=30.80 Aligned_cols=106 Identities=9% Similarity=0.038 Sum_probs=58.2
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCe--EEEEecCCCchhH-HHHHhhhccCCCceEEEecCCCCCCCCCCCCch
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQ--VTIFVVASQTSAA-ESKILQSAMSSKLCHVIEIPAPDISGLVDPDAA 84 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~--Vt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 84 (484)
|||+|+..+.. ..+..+.++|.++ +|+ |..+.+.+..... .+......+ ..+..... .
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~-~~~~~iv~Vit~~~~~~~~~~~~~~~~~----~~~~~~~~-----~------ 61 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKAR-GHNVEIVLVITNPDKPRGRSRAIKNGIP----AQVADEKN-----F------ 61 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTT-SSEEEEEEEEESSTTTHHHHHHHHTTHH----EEEHHGGG-----S------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhC-CCCceEEEEeccccccccccccccCCCC----EEeccccC-----C------
Confidence 78888865544 5567778899998 887 6655555443321 111111122 22211111 0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCc-hhhHHHHHHHhCCCeEEEecc
Q 043859 85 VVTIISVIMREIKPAFRSAISALKTTPTALIVDLF-GTESLAIAEELQIPKYVYVGT 140 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~-~~~~~~~A~~lgIP~v~~~~~ 140 (484)
.......+.+.+.++++ +||++|+-.+ ..-...+-......++.++++
T Consensus 62 ------~~~~~~~~~~~~~l~~~--~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 62 ------QPRSENDEELLELLESL--NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp ------SSHHHHHHHHHHHHHHT--T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred ------CchHhhhhHHHHHHHhh--ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 00112334677888889 9999987654 333445667777788888765
No 179
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=79.21 E-value=18 Score=34.89 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=34.4
Q ss_pred CeEEEEcC-CCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 8 PHAVLLAS-PGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 8 ~~il~~~~-p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
+||+|++. +|-|-..-..++|-.|++. |.+|.++++++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~-g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES-GKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc-CCcEEEEEeCCCC
Confidence 68888888 7999999999999999999 8888888888643
No 180
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=78.73 E-value=7.4 Score=39.86 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=60.3
Q ss_pred ecCCcchh---hhccCCCcccccc---ccCch-hHHHHHhcCCc---eeecccccccchhHHHHHhhhcceEEeeecCCC
Q 043859 348 VPQWAPQI---DILSHPSVGGFLS---HCGWN-STLESITNGVP---MIVWPLYSEQRMNATILTEELGVAIRSKVLPSK 417 (484)
Q Consensus 348 v~~~ipq~---~vL~~~~~~~~It---HgG~g-s~~eal~~GvP---~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 417 (484)
+..++++. +++..+++ +|. +-|+| ++.||+++|+| +|++--.. ..+ +...-|+.++
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~---G~~----~~~~~g~lv~----- 410 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFA---GAA----EELSGALLVN----- 410 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccc---cch----hhcCCCEEEC-----
Confidence 33566664 46888994 442 44554 67999999999 33332111 111 1122355553
Q ss_pred CccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHH
Q 043859 418 GVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKEC 474 (484)
Q Consensus 418 ~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~ 474 (484)
.-+.++++++|.++|+++. +..+++.++.++.+. .-+...-++.++.++
T Consensus 411 -p~d~~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~------~~~~~~w~~~~l~~l 459 (460)
T cd03788 411 -PYDIDEVADAIHRALTMPL-EERRERHRKLREYVR------THDVQAWANSFLDDL 459 (460)
T ss_pred -CCCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH------hCCHHHHHHHHHHhh
Confidence 3478999999999999753 113333344443322 245555666666554
No 181
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=78.48 E-value=5.7 Score=35.40 Aligned_cols=51 Identities=16% Similarity=-0.022 Sum_probs=43.6
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhh
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQ 57 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (484)
++-+|++.+.++..|-....-++..|+.. |++|++++.....+.+.+...+
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~-G~~vi~LG~~vp~e~~v~~~~~ 133 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRAN-GFDVIDLGRDVPIDTVVEKVKK 133 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhC-CcEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999999999999 9999999988776665555433
No 182
>PRK05595 replicative DNA helicase; Provisional
Probab=78.28 E-value=22 Score=36.19 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=38.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHH-hcCCCeEEEEecCCCchhHHHHHhhh
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLV-TLYNFQVTIFVVASQTSAAESKILQS 58 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (484)
=+++..-|+.|-..-.+.+|..+. +. |+.|.|++-+-..+.+..+++..
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~-g~~vl~fSlEms~~~l~~R~~a~ 252 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALRE-GKSVAIFSLEMSKEQLAYKLLCS 252 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHc-CCcEEEEecCCCHHHHHHHHHHH
Confidence 456677789999999999998765 66 89999999997766665554443
No 183
>PRK06321 replicative DNA helicase; Provisional
Probab=78.03 E-value=27 Score=35.80 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=38.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHH-hcCCCeEEEEecCCCchhHHHHHhh
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLV-TLYNFQVTIFVVASQTSAAESKILQ 57 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (484)
=+++..-|+.|-..-.+.+|.... +. |..|.|++-+-....+...++.
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~-g~~v~~fSLEMs~~ql~~Rlla 276 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQN-RLPVGIFSLEMTVDQLIHRIIC 276 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhc-CCeEEEEeccCCHHHHHHHHHH
Confidence 467777899999999999999886 45 8999999998776665555543
No 184
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=77.91 E-value=32 Score=34.73 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=39.3
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHH-hcCCCeEEEEecCCCchhHHHHHhh
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLV-TLYNFQVTIFVVASQTSAAESKILQ 57 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (484)
-=+++...|+.|-..-++.+|..+. +. |+.|.|++.+-....+...++.
T Consensus 195 ~liviag~pg~GKT~~al~ia~~~a~~~-g~~v~~fSlEm~~~~l~~Rl~~ 244 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVALRE-GKPVLFFSLEMSAEQLGERLLA 244 (421)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCCCHHHHHHHHHH
Confidence 3467778899999999999998886 67 8999999998776666555544
No 185
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=77.89 E-value=24 Score=32.86 Aligned_cols=93 Identities=15% Similarity=0.175 Sum_probs=54.6
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
|+|+++..-+. -..|++.|.++ ||+|+..+....... .+...+ ...+. .+.
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~-g~~v~~s~~t~~~~~----~~~~~g---~~~v~-------~g~--------- 51 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQ-GIEILVTVTTSEGKH----LYPIHQ---ALTVH-------TGA--------- 51 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhC-CCeEEEEEccCCccc----cccccC---CceEE-------ECC---------
Confidence 56666543332 56899999999 999998887754321 111111 01110 011
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhh------HHHHHHHhCCCeEEEe
Q 043859 88 IISVIMREIKPAFRSAISALKTTPTALIVDLFGTE------SLAIAEELQIPKYVYV 138 (484)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~------~~~~A~~lgIP~v~~~ 138 (484)
+ ....+.+.+++. ++|+||--.+-++ +..+|+.+|||++.+.
T Consensus 52 -l------~~~~l~~~l~~~--~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 52 -L------DPQELREFLKRH--SIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred -C------CHHHHHHHHHhc--CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 0 012355666777 8998885544333 2358899999999975
No 186
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=77.86 E-value=4.3 Score=38.97 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=33.8
Q ss_pred CeEEEEcC-CCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 8 PHAVLLAS-PGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 8 ~~il~~~~-p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
||++|+.. +|-|-..=..++|-.++++ |++|.++++++..
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~-G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARR-GKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHT-TS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhC-CCCeeEeecCCCc
Confidence 67777777 6999999999999999999 9999999999754
No 187
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=77.65 E-value=44 Score=28.57 Aligned_cols=102 Identities=14% Similarity=0.036 Sum_probs=60.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc-hhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT-SAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
-|.+.+.++.|-....+.+|-+...+ |++|.|+..-... ..=+...++..+ ++.+.......... ... ...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~v~~vQFlKg~~~~gE~~~l~~l~---~v~~~~~g~~~~~~--~~~--~~~ 75 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH-GYRVGVVQFLKGGWKYGELKALERLP---NIEIHRMGRGFFWT--TEN--DEE 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEEeCCCCccCHHHHHHhCC---CcEEEECCCCCccC--CCC--hHH
Confidence 46677888999999999999998888 9999995432221 111223344444 57776655422111 111 111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchh
Q 043859 88 IISVIMREIKPAFRSAISALKTTPTALIVDLFGT 121 (484)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~ 121 (484)
-....+......++.++.- .+|+||.|....
T Consensus 76 -~~~~a~~~~~~a~~~~~~~--~~dLlVLDEi~~ 106 (159)
T cd00561 76 -DIAAAAEGWAFAKEAIASG--EYDLVILDEINY 106 (159)
T ss_pred -HHHHHHHHHHHHHHHHhcC--CCCEEEEechHh
Confidence 1122334444455555554 999999997665
No 188
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=77.64 E-value=21 Score=33.32 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=55.0
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhc-C-CCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTL-Y-NFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAV 85 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r-~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 85 (484)
||||+..=-+. |---+.+|+++|.+. . |++|+++.++..+.-...++--..+ +++..+.. . .+.-....
T Consensus 1 M~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~p----l~~~~~~~-~---~yav~GTP 71 (261)
T PRK13931 1 MRILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHP----MMIAELGP-R---RFAAEGSP 71 (261)
T ss_pred CeEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCC----eEEEEeCC-C---eEEEcCch
Confidence 45555543222 223456677777652 0 4899988888654322222211222 55555431 1 00000001
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeC----------Cchh---hHHHHHHHhCCCeEEEec
Q 043859 86 VTIISVIMREIKPAFRSAISALKTTPTALIVD----------LFGT---ESLAIAEELQIPKYVYVG 139 (484)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D----------~~~~---~~~~~A~~lgIP~v~~~~ 139 (484)
.+.... .+..++.. .+||+||+- .++. +++.-|...|||.+.++.
T Consensus 72 ----aDCV~l---al~~~~~~--~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 72 ----ADCVLA---ALYDVMKD--APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred ----HHHHHH---HHHHhcCC--CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 122222 22333322 389999963 3333 333455568999999874
No 189
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=77.61 E-value=8.9 Score=38.87 Aligned_cols=93 Identities=9% Similarity=0.111 Sum_probs=63.2
Q ss_pred CceE-ecCCcc-h-hhhccCCCccccccccC--chhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCC
Q 043859 344 IGVV-VPQWAP-Q-IDILSHPSVGGFLSHCG--WNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKG 418 (484)
Q Consensus 344 ~~v~-v~~~ip-q-~~vL~~~~~~~~ItHgG--~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~ 418 (484)
.|++ ...+.+ . .+++..|++=+-|+||. ..++.||+.+|+|++..=.... +...+ .. |-.+ .
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i-~~---g~l~------~ 394 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFI-AS---ENIF------E 394 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Ccccc-cC---Ccee------c
Confidence 4544 446677 3 46999999888889876 6799999999999998753322 22232 23 3333 2
Q ss_pred ccCHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 043859 419 VVGREEIKTMVRRILVDEEGYEIRAKVKELQRS 451 (484)
Q Consensus 419 ~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~ 451 (484)
.-+.+++.++|.++|.+++ .++++..+-++.
T Consensus 395 ~~~~~~m~~~i~~lL~d~~--~~~~~~~~q~~~ 425 (438)
T TIGR02919 395 HNEVDQLISKLKDLLNDPN--QFRELLEQQREH 425 (438)
T ss_pred CCCHHHHHHHHHHHhcCHH--HHHHHHHHHHHH
Confidence 3478999999999999875 255554444444
No 190
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=76.48 E-value=8.6 Score=30.85 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=39.2
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhh
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQS 58 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (484)
.|+++.+.+..-|-.-+..++..|+++ ||+|.++-.....+.+.+...+.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~-G~~v~~~d~~~~~~~l~~~~~~~ 50 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKA-GHEVDILDANVPPEELVEALRAE 50 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHT-TBEEEEEESSB-HHHHHHHHHHT
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHC-CCeEEEECCCCCHHHHHHHHhcC
Confidence 379999999999999999999999999 99999986665444444444333
No 191
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=76.46 E-value=6.7 Score=31.86 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=39.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKI 55 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~ 55 (484)
||++.+.++..|..-..-++..|+.. |++|++.......+.+.+..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~-G~~vi~lG~~vp~e~~~~~a 46 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDA-GFEVIYTGLRQTPEEIVEAA 46 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHHH
Confidence 68999999999999999999999998 99999999876555444443
No 192
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=76.30 E-value=25 Score=35.72 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=39.8
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHh-cCCCeEEEEecCCCchhHHHHHhhh
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVT-LYNFQVTIFVVASQTSAAESKILQS 58 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~-r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (484)
--+++...|+.|-..-++.+|..+.. . |+.|.|++-+.....+..+++..
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~-g~~vl~~SlEm~~~~i~~R~~~~ 246 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKE-GKPVAFFSLEMSAEQLAMRMLSS 246 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhC-CCeEEEEeCcCCHHHHHHHHHHH
Confidence 35677778899999999999998764 5 89999999998776666555443
No 193
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=76.19 E-value=60 Score=30.27 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=34.5
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCch
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTS 49 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 49 (484)
--+++.-.|+.|-..-.++++...+++ |..|.|++.+...+
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee~~~ 77 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVESPAN 77 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCch
Confidence 356667778999999999999998888 99999999986443
No 194
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=75.85 E-value=19 Score=33.84 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=34.7
Q ss_pred ceEecCCcchhhhccCCCccccccccCchhHHHHHhcCCceeeccc
Q 043859 345 GVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPL 390 (484)
Q Consensus 345 ~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~ 390 (484)
.+.+.+-++-.++|.+++ .+||-.+. +-.||+.+|+|++++..
T Consensus 184 ~~~~~~~~~~~~Ll~~s~--~VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSD--AVVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCC--EEEEECCH-HHHHHHHcCCceEEecC
Confidence 344556778889999999 78887754 78999999999999863
No 195
>PRK05636 replicative DNA helicase; Provisional
Probab=75.56 E-value=12 Score=38.76 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=38.3
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHH-hcCCCeEEEEecCCCchhHHHHHhh
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLV-TLYNFQVTIFVVASQTSAAESKILQ 57 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (484)
.--|++..-|+.|-..-.+.+|.... +. |..|.|++-+-....+..+++.
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~-g~~v~~fSlEMs~~ql~~R~ls 315 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKH-NKASVIFSLEMSKSEIVMRLLS 315 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEEeeCCHHHHHHHHHH
Confidence 33567778899999999999998875 45 7899999988776666555444
No 196
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=75.53 E-value=61 Score=29.70 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCC-------CceEEEecCCCCCCCC
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSS-------KLCHVIEIPAPDISGL 78 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~p~~~~~~~ 78 (484)
+.--+++.-.|+.|-..=.++++.+-.++ |-.+.|++.+...+.+.+.. ..++.. ..+.+...........
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~~~~-~~~g~~~~~~~~~g~l~~~d~~~~~~~~~ 97 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVRRNM-AQFGWDVRKYEEEGKFAIVDAFTGGIGEA 97 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHHHHH-HHhCCCHHHHhhcCCEEEEeccccccccc
Confidence 34457777788999999888888776678 99999999998776655432 222210 1233333222111000
Q ss_pred CCCCchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhh--------------HHHHHHHhCCCeEEEe
Q 043859 79 VDPDAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTE--------------SLAIAEELQIPKYVYV 138 (484)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~--------------~~~~A~~lgIP~v~~~ 138 (484)
-......... ..........+++.+++. ++++||.|++... -...+..+|+.++.+.
T Consensus 98 ~~~~~~~~~~-~~~~~~~~~~i~~~i~~~--~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~lk~~~~t~llt~ 168 (237)
T TIGR03877 98 AEREKYVVKD-PTDVRELIDVLRQAIRDI--NAKRVVIDSVTTLYITKPAMARSIVMQLKRVLSGLGCTSIFVS 168 (237)
T ss_pred cccccccccC-cccHHHHHHHHHHHHHHh--CCCEEEEcChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 0000000000 011233445566666777 8999999985541 1124567788877654
No 197
>PRK04328 hypothetical protein; Provisional
Probab=75.26 E-value=68 Score=29.69 Aligned_cols=128 Identities=13% Similarity=0.106 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccC-------CCceEEEecCCCCCCCC
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMS-------SKLCHVIEIPAPDISGL 78 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~p~~~~~~~ 78 (484)
+.--+++.-.|+.|-..=.++++..-.++ |..+.|++.+...+.+.+. +..++. ...+.+...........
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ee~~~~i~~~-~~~~g~d~~~~~~~~~l~iid~~~~~~~~~ 99 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALEEHPVQVRRN-MRQFGWDVRKYEEEGKFAIVDAFTGGIGSA 99 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEeeCCHHHHHHH-HHHcCCCHHHHhhcCCEEEEeccccccccc
Confidence 34456677778999988888887776678 9999999998876654433 233331 01233333222111100
Q ss_pred CCCCchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhh--------------HHHHHHHhCCCeEEEe
Q 043859 79 VDPDAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTE--------------SLAIAEELQIPKYVYV 138 (484)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~--------------~~~~A~~lgIP~v~~~ 138 (484)
.......... ..........+...+++. ++++||.|+.... -...++.+|+.++.+.
T Consensus 100 ~~~~~~~~~~-~~~~~~~~~~i~~~i~~~--~~~~vVIDSlt~l~~~~~~~~r~~~~~l~~~lk~~g~t~llt~ 170 (249)
T PRK04328 100 AKREKYVVKD-PDDVRELIDVLRQAIKDI--GAKRVVIDSVSTLYLTKPAMARSIVMQLKRVLSGLGCTAIFVS 170 (249)
T ss_pred cccccccccC-cccHHHHHHHHHHHHHhh--CCCEEEEeChhHhhcCChHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 0000000000 011223444566677777 9999999986432 1123456677766554
No 198
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=74.77 E-value=17 Score=35.00 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=25.4
Q ss_pred CCCCeEEE-eCCc-hhhHHHHHHHhCCCeEEEecccH
Q 043859 108 KTTPTALI-VDLF-GTESLAIAEELQIPKYVYVGTNA 142 (484)
Q Consensus 108 ~~~pD~VI-~D~~-~~~~~~~A~~lgIP~v~~~~~~~ 142 (484)
...||+|| .|+. ...+..=|.++|||+|.+.-+++
T Consensus 150 ~~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 150 GGLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred ccCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 45799877 5543 34456789999999999886654
No 199
>PRK05748 replicative DNA helicase; Provisional
Probab=74.62 E-value=28 Score=35.47 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=40.3
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHH-hcCCCeEEEEecCCCchhHHHHHhhh
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLV-TLYNFQVTIFVVASQTSAAESKILQS 58 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (484)
--+++..-|+.|-..-.+.+|...+ +. |+.|.|++.+-..+.+..+++..
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~-g~~v~~fSlEms~~~l~~R~l~~ 254 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKT-DKNVAIFSLEMGAESLVMRMLCA 254 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhC-CCeEEEEeCCCCHHHHHHHHHHH
Confidence 3577788899999999999999876 56 89999999998777766665543
No 200
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=74.04 E-value=50 Score=30.20 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=37.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHh
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKIL 56 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~ 56 (484)
-+++...|+.|=..-+++++..+....|+.|.|++.+.....+.....
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~ 62 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLL 62 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHH
Confidence 456677789999999999988876543799999999987766555543
No 201
>PRK06849 hypothetical protein; Provisional
Probab=73.85 E-value=31 Score=34.42 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCC
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQ 47 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~ 47 (484)
+.+|+|+++.... ...+.+|+.|.++ ||+|+.+.....
T Consensus 2 ~~~~~VLI~G~~~----~~~l~iar~l~~~-G~~Vi~~d~~~~ 39 (389)
T PRK06849 2 NTKKTVLITGARA----PAALELARLFHNA-GHTVILADSLKY 39 (389)
T ss_pred CCCCEEEEeCCCc----HHHHHHHHHHHHC-CCEEEEEeCCch
Confidence 3578888885433 2689999999999 999999987753
No 202
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=73.83 E-value=16 Score=37.71 Aligned_cols=114 Identities=12% Similarity=0.143 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCC-------CceEEEecCCCCCCCC
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSS-------KLCHVIEIPAPDISGL 78 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~p~~~~~~~ 78 (484)
+.--+++.-.|+.|--.=.++++.+..++ |..|.|++.++..+.+.+.. +..+.. ..+.+.....
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s~eEs~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p------ 333 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN-KERAILFAYEESRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYP------ 333 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCHHHHHHHH-HHcCCChHHHhhCCcEEEEEccc------
Confidence 34457777888999999999999999999 99999999998877655542 444411 0133322211
Q ss_pred CCCCchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhH---------------HHHHHHhCCCeEEEec
Q 043859 79 VDPDAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTES---------------LAIAEELQIPKYVYVG 139 (484)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~---------------~~~A~~lgIP~v~~~~ 139 (484)
.... .......+.+.+++. ++++||.|.....- ...++..||..+....
T Consensus 334 --~~~~--------~~~~~~~i~~~i~~~--~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~~~t~~ 397 (484)
T TIGR02655 334 --ESAG--------LEDHLQIIKSEIADF--KPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNT 397 (484)
T ss_pred --ccCC--------hHHHHHHHHHHHHHc--CCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeEEEeec
Confidence 1111 122344556667777 99999999866421 1245667888776544
No 203
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=73.34 E-value=61 Score=30.21 Aligned_cols=96 Identities=19% Similarity=0.112 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcC-CCeEEEEecCCCch----hHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHhhH
Q 043859 24 VLELGKRLVTLY-NFQVTIFVVASQTS----AAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKP 98 (484)
Q Consensus 24 ~l~La~~L~~r~-Gh~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (484)
.+..|-+|++++ |.+||.++-.+... .+.+.+ ..|....+.+ ....+. +.+.. . ...
T Consensus 41 AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aL--AmGaD~avli---~d~~~~-----g~D~~----~----tA~ 102 (256)
T PRK03359 41 AIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVL--SRGPDELIVV---IDDQFE-----QALPQ----Q----TAS 102 (256)
T ss_pred HHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHH--HcCCCEEEEE---ecCccc-----CcCHH----H----HHH
Confidence 467778888763 37999999776441 122222 1221111222 111111 11111 1 223
Q ss_pred HHHHHHHhcCCCCeEEEeCCch------hhHHHHHHHhCCCeEEEec
Q 043859 99 AFRSAISALKTTPTALIVDLFG------TESLAIAEELQIPKYVYVG 139 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~~~------~~~~~~A~~lgIP~v~~~~ 139 (484)
.+...+++. .||+||+...+ .-+..+|+.||+|+++...
T Consensus 103 ~La~ai~~~--~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 103 ALAAAAQKA--GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred HHHHHHHHh--CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 445566667 79999975332 2456799999999998764
No 204
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=73.31 E-value=35 Score=29.17 Aligned_cols=99 Identities=21% Similarity=0.169 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCCeEEEEecCCCchh--HHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHhhHHH
Q 043859 23 PVLELGKRLVTLYNFQVTIFVVASQTSA--AESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKPAF 100 (484)
Q Consensus 23 P~l~La~~L~~r~Gh~Vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 100 (484)
-++..|++|.+..|.+|+.++..+.... ..+..+...+ .-+.+.+........ ........+
T Consensus 19 e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G---~d~v~~~~~~~~~~~-------------~~~~~a~~l 82 (164)
T PF01012_consen 19 EALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYG---ADKVYHIDDPALAEY-------------DPEAYADAL 82 (164)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTT---ESEEEEEE-GGGTTC--------------HHHHHHHH
T ss_pred HHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcC---CcEEEEecCcccccc-------------CHHHHHHHH
Confidence 3688999998754788888876632211 1112223344 123333332211111 111233456
Q ss_pred HHHHHhcCCCCeEEEeCCchhh---HHHHHHHhCCCeEEEec
Q 043859 101 RSAISALKTTPTALIVDLFGTE---SLAIAEELQIPKYVYVG 139 (484)
Q Consensus 101 ~~~l~~~~~~pD~VI~D~~~~~---~~~~A~~lgIP~v~~~~ 139 (484)
.+++++. +||+|+.-....+ +..+|.+||.|++.-..
T Consensus 83 ~~~~~~~--~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 83 AELIKEE--GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp HHHHHHH--T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred HHHHHhc--CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 6777777 9999997754443 34699999999887543
No 205
>PRK08760 replicative DNA helicase; Provisional
Probab=73.24 E-value=36 Score=35.05 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=38.7
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHH-hcCCCeEEEEecCCCchhHHHHHhh
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLV-TLYNFQVTIFVVASQTSAAESKILQ 57 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (484)
-=+++..-|+.|-..-.+.+|.... +. |+.|.|++-+-....+..+++.
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~-g~~V~~fSlEMs~~ql~~Rl~a 279 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKS-KKGVAVFSMEMSASQLAMRLIS 279 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhc-CCceEEEeccCCHHHHHHHHHH
Confidence 3567777899999999999999876 45 8999999998777665555543
No 206
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=73.10 E-value=9.7 Score=34.42 Aligned_cols=52 Identities=21% Similarity=0.082 Sum_probs=43.6
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhh
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQS 58 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (484)
++.+|++.+.++..|-....-++-.|..+ |++|++++.....+.+.+...+.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~-G~~Vi~LG~~vp~e~~v~~~~~~ 138 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNN-GYEVIDLGVMVPIEKILEAAKEH 138 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhC-CCEEEECCCCCCHHHHHHHHHHc
Confidence 45799999999999999999999999999 99999999887666555554343
No 207
>PRK12342 hypothetical protein; Provisional
Probab=73.09 E-value=51 Score=30.69 Aligned_cols=96 Identities=20% Similarity=0.204 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCCc--hh-HHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHhhHHH
Q 043859 24 VLELGKRLVTLYNFQVTIFVVASQT--SA-AESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKPAF 100 (484)
Q Consensus 24 ~l~La~~L~~r~Gh~Vt~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 100 (484)
.+..|-+|++. |.+||.++-.+.. +. +.+..+ ..+....+.+ ....+ . +.+.. . ....+
T Consensus 40 AlE~AlrLk~~-g~~Vtvls~Gp~~a~~~~l~r~al-amGaD~avli---~d~~~----~-g~D~~----a----ta~~L 101 (254)
T PRK12342 40 AIEAASQLATD-GDEIAALTVGGSLLQNSKVRKDVL-SRGPHSLYLV---QDAQL----E-HALPL----D----TAKAL 101 (254)
T ss_pred HHHHHHHHhhc-CCEEEEEEeCCChHhHHHHHHHHH-HcCCCEEEEE---ecCcc----C-CCCHH----H----HHHHH
Confidence 46677778765 8999999977643 22 212111 1221112222 11111 1 11111 1 22344
Q ss_pred HHHHHhcCCCCeEEEeCCchh------hHHHHHHHhCCCeEEEec
Q 043859 101 RSAISALKTTPTALIVDLFGT------ESLAIAEELQIPKYVYVG 139 (484)
Q Consensus 101 ~~~l~~~~~~pD~VI~D~~~~------~~~~~A~~lgIP~v~~~~ 139 (484)
...+++. .||+|++...+. -+..+|+.||+|+++...
T Consensus 102 a~~i~~~--~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 102 AAAIEKI--GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHHHHh--CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 5566667 799999753332 356899999999998764
No 208
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=73.06 E-value=27 Score=35.43 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHh---hhccCCCceEEEecCCCCCCCCCCCC
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKIL---QSAMSSKLCHVIEIPAPDISGLVDPD 82 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~ 82 (484)
..+|+++..-+ .-.+.+++.|.+- |-+|..+.+........+... ...+...+..+.. .
T Consensus 302 ~gkrv~i~g~~-----~~~~~la~~L~el-Gm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~------------~ 363 (435)
T cd01974 302 HGKKFALYGDP-----DFLIGLTSFLLEL-GMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYP------------G 363 (435)
T ss_pred CCCEEEEEcCh-----HHHHHHHHHHHHC-CCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEE------------C
Confidence 34677776533 3478888999988 999987776543332222221 1111000111100 0
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 83 AAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
.....+.+.+++. +||++|.... ...+|+++|||++.+.
T Consensus 364 ------------~d~~e~~~~i~~~--~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 364 ------------KDLWHLRSLLFTE--PVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred ------------CCHHHHHHHHhhc--CCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 0122455667777 9999999853 5688999999998764
No 209
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=73.05 E-value=66 Score=28.99 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHH---HHHHHH----
Q 043859 20 HVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVV---TIISVI---- 92 (484)
Q Consensus 20 Hv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~~---- 92 (484)
++.-.+.+...+.+. |-+|.|+++......+.....+..+ ..++.-. + ..+.+..-.... ..+...
T Consensus 41 ~L~~A~~~i~~i~~~-~~~ILfV~t~~~~~~~v~~~a~~~~----~~yi~~r-W-i~G~LTN~~~i~~~i~~l~~l~~~~ 113 (211)
T PF00318_consen 41 QLRKALKFIKSIAKN-GGKILFVGTKPQASKIVKKFAKRTG----SFYINER-W-IGGTLTNWKTIKKSIKKLKKLEKLF 113 (211)
T ss_dssp HHHHHHHHHHHHHTT-TGGEEEEECSTTHHHHHHHHHHHHT----CEEEESS---STTTTTTTTHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcC-CCeEEEEEcchHHHHHHHHHHHHhC----CCccCce-e-cCcccCcHHHHHHHHHHHHHHHHhh
Confidence 345566677777777 8999999999887776677666665 3333211 1 122222111111 111110
Q ss_pred ------HHHhhHHHHHHHHhc------CCCCeEEEe-CCc-hhhHHHHHHHhCCCeEEEecccH
Q 043859 93 ------MREIKPAFRSAISAL------KTTPTALIV-DLF-GTESLAIAEELQIPKYVYVGTNA 142 (484)
Q Consensus 93 ------~~~~~~~l~~~l~~~------~~~pD~VI~-D~~-~~~~~~~A~~lgIP~v~~~~~~~ 142 (484)
.....+...++-+.+ ...||+||. |+. ...+..=|..+|||+|.+.-+++
T Consensus 114 ~~~kk~~~~~~~~~~kl~k~~~Gi~~l~~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~ 177 (211)
T PF00318_consen 114 KLTKKENAKLKKKYQKLKKYFGGIKNLKKLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNC 177 (211)
T ss_dssp TSSHHHHHHHHHHHHHHHHHCTTTTTCSSSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS
T ss_pred hccchhhhhhHHHHHHhhhhhHhhhcccccCcEEEEecccccchhHHHHHhcCceEEEeecCCC
Confidence 011122333333333 346999874 433 34455678899999999876554
No 210
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=73.01 E-value=8.9 Score=31.93 Aligned_cols=110 Identities=12% Similarity=0.118 Sum_probs=68.2
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCch
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAA 84 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 84 (484)
.++.||++.+.+..||=.-.--+++.|+.. |++|.+...-...+.+.+.-++.. .+.+-+...
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~-GfeVi~~g~~~tp~e~v~aA~~~d-----v~vIgvSsl----------- 72 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADA-GFEVINLGLFQTPEEAVRAAVEED-----VDVIGVSSL----------- 72 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhC-CceEEecCCcCCHHHHHHHHHhcC-----CCEEEEEec-----------
Confidence 468899999999999999999999999998 999998887665554444433432 333322221
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchh-hHHHHHHHhCCCeEE
Q 043859 85 VVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGT-ESLAIAEELQIPKYV 136 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~-~~~~~A~~lgIP~v~ 136 (484)
........+.+.+.+++......+|+.-...+ .-...-+++|+--|.
T Consensus 73 -----~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if 120 (143)
T COG2185 73 -----DGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIF 120 (143)
T ss_pred -----cchHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcceee
Confidence 11233345666667776633334434443332 223445556666443
No 211
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=72.94 E-value=5.2 Score=32.85 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=33.2
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchh
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSA 50 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 50 (484)
|||++...++.+=.. ...+.++|.++ |++|.++.++.....
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~-g~~v~vv~S~~A~~~ 41 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRA-GWEVRVVLSPSAERF 41 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTT-TSEEEEEESHHHHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhC-CCEEEEEECCcHHHH
Confidence 688888888877777 99999999999 999999999965433
No 212
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=72.69 E-value=13 Score=33.99 Aligned_cols=47 Identities=6% Similarity=0.078 Sum_probs=37.5
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHH
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESK 54 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 54 (484)
.--+++.-.|+.|...-..+++....++ |..|.|++.+...+.+.+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~~~~~~~~~ 71 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTENTSKSYLKQ 71 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHHHHH
Confidence 4456677778999999999998887778 9999999999766554443
No 213
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=72.50 E-value=47 Score=33.52 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=54.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTI 88 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 88 (484)
|++++..+.. .+.+++.|.+- |-+|+.+.+........+...+... .. . ..+.. ..++.
T Consensus 282 kv~v~g~~~~-----~~~la~~L~el-Gmevv~~~t~~~~~~~~~~~~~~l~---~~-----~-~~v~~----~~~~~-- 340 (416)
T cd01980 282 RVLVSGYEGN-----ELLVARLLIES-GAEVPYVSTSIPKTSLSAPDYEWLS---AL-----G-VEVRY----RKSLE-- 340 (416)
T ss_pred eEEEECCCch-----hHHHHHHHHHc-CCEEEEEecCCCChhhhHHHHHHHH---hc-----C-Ccccc----CCCHH--
Confidence 6655554443 66699999998 9999999987422211222222221 00 0 00000 01111
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 89 ISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
.....+++. +||++|... .+..+|+++|||.+.+.
T Consensus 341 ----------~~~~~~~~~--~pDl~Ig~s---~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 341 ----------DDIAAVEEY--RPDLAIGTT---PLVQYAKEKGIPALYYT 375 (416)
T ss_pred ----------HHHHHHhhc--CCCEEEeCC---hhhHHHHHhCCCEEEec
Confidence 112445567 999999883 36678999999998764
No 214
>PRK07773 replicative DNA helicase; Validated
Probab=71.72 E-value=39 Score=37.81 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=38.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhh
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQ 57 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (484)
=+++..-|+.|-..-.+.+|...+.+.|..|.|++-+-....+...++.
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~~s 267 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRLLS 267 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHH
Confidence 4677778999999999999999864427899999998777766666544
No 215
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=71.60 E-value=14 Score=40.62 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=64.7
Q ss_pred hhhccCCCcccccc--ccCch-hHHHHHhcCCc---eeecccccccchhHHHHHhhhc-ceEEeeecCCCCccCHHHHHH
Q 043859 355 IDILSHPSVGGFLS--HCGWN-STLESITNGVP---MIVWPLYSEQRMNATILTEELG-VAIRSKVLPSKGVVGREEIKT 427 (484)
Q Consensus 355 ~~vL~~~~~~~~It--HgG~g-s~~eal~~GvP---~v~~P~~~DQ~~na~rv~~~~G-~g~~l~~~~~~~~~~~~~l~~ 427 (484)
.+++..+++ +++| .-|+| +..|++++|+| ++++. +--..+. .+| -|+.++ -.+.+++++
T Consensus 370 ~aly~~ADv-fvvtSlrEGmnLv~lEamA~g~p~~gvlVlS---e~~G~~~----~l~~~allVn------P~D~~~lA~ 435 (797)
T PLN03063 370 CALYAITDV-MLVTSLRDGMNLVSYEFVACQKAKKGVLVLS---EFAGAGQ----SLGAGALLVN------PWNITEVSS 435 (797)
T ss_pred HHHHHhCCE-EEeCccccccCcchhhHheeecCCCCCEEee---CCcCchh----hhcCCeEEEC------CCCHHHHHH
Confidence 368888995 3333 44776 66799999999 44444 2222221 234 467764 358899999
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhhhh
Q 043859 428 MVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGMMT 478 (484)
Q Consensus 428 ~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~ 478 (484)
+|.++|+.+.. ..+++.+++.+.++ .-+...-.+.+++++.+..
T Consensus 436 AI~~aL~m~~~-er~~r~~~~~~~v~------~~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 436 AIKEALNMSDE-ERETRHRHNFQYVK------THSAQKWADDFMSELNDII 479 (797)
T ss_pred HHHHHHhCCHH-HHHHHHHHHHHhhh------hCCHHHHHHHHHHHHHHHh
Confidence 99999984331 25555666665533 2235556777777776664
No 216
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=71.46 E-value=23 Score=35.94 Aligned_cols=35 Identities=20% Similarity=0.104 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 99 AFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
++.+.+++. +||+||.+.. ...+|+++|+|++.+.
T Consensus 362 el~~~i~~~--~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 362 DLESLAKEE--PVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHhhcc--CCCEEEECch---hHHHHHhcCCCEEEec
Confidence 455677777 9999999963 3578899999998654
No 217
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=71.34 E-value=21 Score=36.08 Aligned_cols=91 Identities=21% Similarity=0.162 Sum_probs=52.9
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchH
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAV 85 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 85 (484)
+.||||++-.+++-| +|++.|.+. ++-..+++.+.+. +..... .......+..
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~-~~~~~~~~~pgn~------g~~~~~--------~~~~~~~~~~------- 55 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKS-NLLSELKVFPGNG------GFPDDE--------LLPADSFSIL------- 55 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhC-CCCCEEEEECCch------HHhccc--------cccccCcCcC-------
Confidence 468999999998877 689999988 7654445544322 111111 0000001100
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhh---HHHHHHHhCCCeE
Q 043859 86 VTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTE---SLAIAEELQIPKY 135 (484)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~---~~~~A~~lgIP~v 135 (484)
-.+.+.+++++. ++|+||.++-.+. ...+++++|||++
T Consensus 56 ----------d~~~l~~~a~~~--~iD~Vv~g~E~~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 56 ----------DKSSVQSFLKSN--PFDLIVVGPEDPLVAGFADWAAELGIPCF 96 (426)
T ss_pred ----------CHHHHHHHHHHc--CCCEEEECCchHHHHHHHHHHHHcCCCcC
Confidence 112334456677 9999998764443 2346677999954
No 218
>PRK09165 replicative DNA helicase; Provisional
Probab=70.65 E-value=46 Score=34.46 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=37.6
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhc--------------CCCeEEEEecCCCchhHHHHHhh
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTL--------------YNFQVTIFVVASQTSAAESKILQ 57 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r--------------~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (484)
=+++..-|+.|-..-++.+|...+.+ .|..|.|++-+-..+.+..+++.
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la 281 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILS 281 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHH
Confidence 46777778999999999999888642 06889999999877766665544
No 219
>PRK10490 sensor protein KdpD; Provisional
Probab=70.59 E-value=20 Score=40.17 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=37.8
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCC
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQ 47 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~ 47 (484)
..++||.|-..|+-|-.+-|+.-|.+|+++ |++|++-.-+..
T Consensus 22 ~g~l~i~~g~~~gvgkt~~ml~~a~~~~~~-g~dvv~g~~e~h 63 (895)
T PRK10490 22 RGKLKIFFGACAGVGKTYAMLQEAQRLRAQ-GLDVLVGVVETH 63 (895)
T ss_pred CCcEEEEeecCCCCCHHHHHHHHHHHHHhC-CCcEEEEEeeCC
Confidence 457899999999999999999999999999 999997776654
No 220
>PRK06904 replicative DNA helicase; Validated
Probab=70.46 E-value=38 Score=34.78 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=39.9
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHH-hcCCCeEEEEecCCCchhHHHHHhhh
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLV-TLYNFQVTIFVVASQTSAAESKILQS 58 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (484)
.-=|++..-|+-|-..-++.+|...+ +. |+.|.|++-+-..+.+..+++..
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~~-g~~Vl~fSlEMs~~ql~~Rlla~ 272 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMAS-EKPVLVFSLEMPAEQIMMRMLAS 272 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhc-CCeEEEEeccCCHHHHHHHHHHh
Confidence 33567777899999999999999876 45 89999999997776666665544
No 221
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=70.16 E-value=15 Score=38.37 Aligned_cols=80 Identities=11% Similarity=0.005 Sum_probs=47.5
Q ss_pred chhhhccCCCcccccc---ccCch-hHHHHHhcCCceeeccccc-ccchhHHHHHhhh-cceEEeeecC-CCCccCHHHH
Q 043859 353 PQIDILSHPSVGGFLS---HCGWN-STLESITNGVPMIVWPLYS-EQRMNATILTEEL-GVAIRSKVLP-SKGVVGREEI 425 (484)
Q Consensus 353 pq~~vL~~~~~~~~It---HgG~g-s~~eal~~GvP~v~~P~~~-DQ~~na~rv~~~~-G~g~~l~~~~-~~~~~~~~~l 425 (484)
+..+++..|+ ++|. +=|+| +.+||+++|+|+|+....+ ..... ..+ ..- ..|+.+...+ ..-.-+.++|
T Consensus 467 ~y~E~~~g~d--l~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v-~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCH--LGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHI-EDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhce--EEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHh-ccCCCceEEEecCCccchHHHHHHH
Confidence 3566778888 4554 34544 8999999999999987543 22111 111 111 2566664211 1012356788
Q ss_pred HHHHHHHhccc
Q 043859 426 KTMVRRILVDE 436 (484)
Q Consensus 426 ~~~i~~vl~~~ 436 (484)
.+++.+++..+
T Consensus 543 a~~m~~~~~~~ 553 (590)
T cd03793 543 TQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHhCCc
Confidence 88888888543
No 222
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=69.83 E-value=39 Score=34.19 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=54.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC----CchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCch
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS----QTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAA 84 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 84 (484)
|+.+...+.. .+.+++.|.+- |-+|..+++.. +.+...+ .....+ .. . ....+
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~el-Gmevv~~~t~~~~~~~~~~~~~-~~~~~~----~~-----------v-~~~~d 343 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLES-GADVPYVGTAIPRTAWGAEDKR-WLEMLG----VE-----------V-KYRAS 343 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHC-CCEEEEEecCCCCccccHHHHH-HHHhcC----CC-----------c-eeccC
Confidence 7777776665 88999999998 99999987773 2222111 111111 00 0 01111
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 85 VVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
+ .. .+ +.+++. +||++|... -+..+|+++|||.+.+.
T Consensus 344 l----~~-------~~-~~l~~~--~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 344 L----ED-------DM-EAVLEF--EPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred H----HH-------HH-HHHhhC--CCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 1 11 11 344667 999999883 25568999999999864
No 223
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=68.90 E-value=15 Score=30.39 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=42.9
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhh
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQS 58 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (484)
+.+|++.+..+.+|-.----++..|... |++|+........+.+.+.-.+.
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~-GfeVi~LG~~v~~e~~v~aa~~~ 51 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNA-GFNVVNLGVLSPQEEFIKAAIET 51 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHC-CCEEEECCCCCCHHHHHHHHHHc
Confidence 3589999999999999999999999999 99999999887766655554443
No 224
>PRK08006 replicative DNA helicase; Provisional
Probab=68.83 E-value=66 Score=33.06 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=40.0
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHH-hcCCCeEEEEecCCCchhHHHHHhhh
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLV-TLYNFQVTIFVVASQTSAAESKILQS 58 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (484)
.-=|++..-|+-|-..-.+.+|...+ +. |+.|.|++-+-..+.+..+++..
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~~-g~~V~~fSlEM~~~ql~~Rlla~ 275 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAMLQ-DKPVLIFSLEMPGEQIMMRMLAS 275 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCeEEEEeccCCHHHHHHHHHHH
Confidence 34567778899999999999999886 45 89999999997666666555543
No 225
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=68.74 E-value=1e+02 Score=28.81 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=51.9
Q ss_pred CceEecCCcc---hhhhccCCCccccccc---cCchh-HHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCC
Q 043859 344 IGVVVPQWAP---QIDILSHPSVGGFLSH---CGWNS-TLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPS 416 (484)
Q Consensus 344 ~~v~v~~~ip---q~~vL~~~~~~~~ItH---gG~gs-~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~ 416 (484)
.++....+++ ...++..++ +++.- .|.|. +.|++++|+|+|.-. .......+ .+.+.|..+.
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~--~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~-~~~~~g~~~~---- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASAD--VFVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVV-EDGETGLLVP---- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCC--EEEeccccccchHHHHHHHhcCCcEEECC----CCChHHHh-cCCCceEecC----
Confidence 5677778888 234677777 45544 35543 599999999996654 33333333 2332455322
Q ss_pred CCccCHHHHHHHHHHHhccc
Q 043859 417 KGVVGREEIKTMVRRILVDE 436 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~vl~~~ 436 (484)
..+.+.+.+++..++.+.
T Consensus 326 --~~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 326 --PGDVEELADALEQLLEDP 343 (381)
T ss_pred --CCCHHHHHHHHHHHhcCH
Confidence 227899999999999886
No 226
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=68.54 E-value=41 Score=33.85 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEE
Q 043859 99 AFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVY 137 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~ 137 (484)
++.+.+++. +||++|.... ...+|+++|||++..
T Consensus 347 e~~~~i~~~--~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 347 ELKKLLKEK--KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHhhc--CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 455777777 9999999843 347899999998854
No 227
>PHA02542 41 41 helicase; Provisional
Probab=68.35 E-value=27 Score=35.85 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=38.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHh
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKIL 56 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~ 56 (484)
=+++..-|+-|-..-.+.+|....+. |+.|.|++-+-..+.+..+++
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~-g~~Vl~fSLEM~~~ql~~Rl~ 238 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQ-GYNVLYISMEMAEEVIAKRID 238 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEEeccCCHHHHHHHHH
Confidence 46677789999999999999999888 999999998877666555544
No 228
>PRK08840 replicative DNA helicase; Provisional
Probab=68.30 E-value=74 Score=32.64 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=39.7
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHH-hcCCCeEEEEecCCCchhHHHHHhhh
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLV-TLYNFQVTIFVVASQTSAAESKILQS 58 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (484)
-=+++..-|+.|-..-.+.+|...+ +. |+.|.|++-+-..+.+..+++..
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~-~~~v~~fSlEMs~~ql~~Rlla~ 268 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQ-DKPVLIFSLEMPAEQLMMRMLAS 268 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhC-CCeEEEEeccCCHHHHHHHHHHh
Confidence 3466777899999999999999986 45 89999999997776666665544
No 229
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=67.88 E-value=45 Score=26.45 Aligned_cols=84 Identities=20% Similarity=0.206 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHhhHH
Q 043859 20 HVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKPA 99 (484)
Q Consensus 20 Hv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (484)
+=.-++.+|+.|.+. |+++. +++... ..+...+ +.+..+..... + ..+.
T Consensus 10 ~K~~~~~~a~~l~~~-G~~i~--AT~gTa-----~~L~~~G----i~~~~v~~~~~------~-------------g~~~ 58 (112)
T cd00532 10 VKAMLVDLAPKLSSD-GFPLF--ATGGTS-----RVLADAG----IPVRAVSKRHE------D-------------GEPT 58 (112)
T ss_pred cHHHHHHHHHHHHHC-CCEEE--ECcHHH-----HHHHHcC----CceEEEEecCC------C-------------CCcH
Confidence 456688999999998 99983 444333 2344444 44433322111 0 1244
Q ss_pred HHHHHHh-cCCCCeEEEe--CCch--------hhHHHHHHHhCCCeEE
Q 043859 100 FRSAISA-LKTTPTALIV--DLFG--------TESLAIAEELQIPKYV 136 (484)
Q Consensus 100 l~~~l~~-~~~~pD~VI~--D~~~--------~~~~~~A~~lgIP~v~ 136 (484)
+.+++++ - ++|+||. |... +.-..+|-..+||+++
T Consensus 59 i~~~i~~~g--~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 59 VDAAIAEKG--KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HHHHHhCCC--CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 5566665 5 9999997 3222 1122478889999876
No 230
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=67.56 E-value=83 Score=27.33 Aligned_cols=101 Identities=7% Similarity=0.051 Sum_probs=57.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc-hhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT-SAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
-|.+++..+.|-..-.+.+|-+...+ |++|.++.--... ..=+...++... +.+.......... ....+ .
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~ivQFlKg~~~~GE~~~l~~~~----~~~~~~g~g~~~~--~~~~~--~ 77 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVIQFIKGAWPNGERAAFEPHG----VEFQVMGTGFTWE--TQNRE--A 77 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCcccChHHHHHhcC----cEEEECCCCCeec--CCCcH--H
Confidence 57778889999999999999999998 9999766322111 000112223333 6666665421111 11111 1
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchh
Q 043859 88 IISVIMREIKPAFRSAISALKTTPTALIVDLFGT 121 (484)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~ 121 (484)
-....+......++.+.+- .+|+||.|....
T Consensus 78 -~~~~~~~~~~~a~~~l~~~--~~DlvVLDEi~~ 108 (173)
T TIGR00708 78 -DTAIAKAAWQHAKEMLADP--ELDLVLLDELTY 108 (173)
T ss_pred -HHHHHHHHHHHHHHHHhcC--CCCEEEehhhHH
Confidence 1122334444445555544 999999997654
No 231
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=67.47 E-value=21 Score=33.00 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCeEEEEecCC
Q 043859 24 VLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 24 ~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
.-.|+++|+++ ||+|+++++-.
T Consensus 22 ~~~L~kaL~~~-G~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQ-GHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHT-T-EEEEEEE-T
T ss_pred HHHHHHHHHhc-CCeEEEEEccc
Confidence 56789999999 99999999876
No 232
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=67.00 E-value=31 Score=31.24 Aligned_cols=103 Identities=12% Similarity=0.093 Sum_probs=60.0
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHH
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVV 86 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (484)
.--+++...|+.|-..-.+.++....++ |+.|.|++.+...+.+.+.. ...+ +.+..+-...+. ..+.. .
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~~-~~~~----~~~~~~~~~~l~-~~~~~---~ 85 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGYA-KSKG----WDLEDYIDKSLY-IVRLD---P 85 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHH-HHcC----CChHHHHhCCeE-EEecC---H
Confidence 3345666667999988888888888788 99999999998766554443 3333 221111000000 00000 0
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchh
Q 043859 87 TIISVIMREIKPAFRSAISALKTTPTALIVDLFGT 121 (484)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~ 121 (484)
..+..........++.++++. ++++||.|+...
T Consensus 86 ~~~~~~~~~l~~~~~~~i~~~--~~~~vVIDsls~ 118 (224)
T TIGR03880 86 SDFKTSLNRIKNELPILIKEL--GASRVVIDPISL 118 (224)
T ss_pred HHHHhhHHHHHHHHHHHHHHh--CCCEEEEcChHH
Confidence 111222334445566677777 899999997554
No 233
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=66.94 E-value=69 Score=30.93 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHH---hhhccCCCceEEEec
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKI---LQSAMSSKLCHVIEI 70 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 70 (484)
++--|+|+-+-+.|-..-.-.||..|.+. |+.|.++...-|+.-...++ .+..+ +.++..
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~-g~~VllaA~DTFRAaAiEQL~~w~er~g----v~vI~~ 200 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQ-GKSVLLAAGDTFRAAAIEQLEVWGERLG----VPVISG 200 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHC-CCeEEEEecchHHHHHHHHHHHHHHHhC----CeEEcc
Confidence 45677888889999999999999999999 99999999999886554442 23344 666654
No 234
>PRK07004 replicative DNA helicase; Provisional
Probab=66.80 E-value=46 Score=34.05 Aligned_cols=49 Identities=14% Similarity=0.342 Sum_probs=39.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHH-hcCCCeEEEEecCCCchhHHHHHhhh
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLV-TLYNFQVTIFVVASQTSAAESKILQS 58 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (484)
=+++..-|+.|-..-++.+|..++ +. |..|.|++-+-..+.+..+++..
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~-~~~v~~fSlEM~~~ql~~R~la~ 264 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEY-GLPVAVFSMEMPGTQLAMRMLGS 264 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHHh
Confidence 467777899999999999999875 45 89999999997776666665543
No 235
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=66.67 E-value=50 Score=33.76 Aligned_cols=94 Identities=14% Similarity=0.050 Sum_probs=54.0
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHH
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVV 86 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (484)
.+++++...+ .-.+.+++.|.+- |-+|..+.+......-.+.+.+..+ .+.-+. ++
T Consensus 326 Gkrv~i~~g~-----~~~~~l~~~l~el-Gmevv~~~t~~~~~~d~~~l~~~~~--~~~~v~-------~~--------- 381 (456)
T TIGR01283 326 GKKAAIYTGG-----VKSWSLVSALQDL-GMEVVATGTQKGTEEDYARIRELMG--EGTVML-------DD--------- 381 (456)
T ss_pred CCEEEEEcCC-----chHHHHHHHHHHC-CCEEEEEeeecCCHHHHHHHHHHcC--CCeEEE-------eC---------
Confidence 4577665433 3446888888888 8999888765432211111111111 001000 00
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEE
Q 043859 87 TIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVY 137 (484)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~ 137 (484)
.....+.+.+++. +||++|... ....+|+++|||++.+
T Consensus 382 --------~d~~e~~~~i~~~--~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 382 --------ANPRELLKLLLEY--KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred --------CCHHHHHHHHhhc--CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 0123566777778 999999862 2456788999998875
No 236
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=66.40 E-value=40 Score=33.69 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=42.6
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHH
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKI 55 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~ 55 (484)
+|-.|+++-.-+.|-..-+-.||+.|.++ |+.|.+++.+-+++....++
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~kvllVaaD~~RpAA~eQL 147 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK-GKKVLLVAADTYRPAAIEQL 147 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc-CCceEEEecccCChHHHHHH
Confidence 35678888888999999999999999999 99999999999987766554
No 237
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=66.38 E-value=11 Score=37.37 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=61.7
Q ss_pred ceEe-cCCcchhhhccCCCccccccccCchhHHHHHhcCCceeecccccccchhHHHH---HhhhcceEEeeecCCCCcc
Q 043859 345 GVVV-PQWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATIL---TEELGVAIRSKVLPSKGVV 420 (484)
Q Consensus 345 ~v~v-~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv---~~~~G~g~~l~~~~~~~~~ 420 (484)
++.. .+..+..++|..++ ++||=- ...+.|.+..++|+|....-.|.+....-+ -++..-|.. ..
T Consensus 253 ~i~~~~~~~~~~~ll~~aD--iLITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~--------~~ 321 (369)
T PF04464_consen 253 NIIFVSDNEDIYDLLAAAD--ILITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPI--------VY 321 (369)
T ss_dssp TEEE-TT-S-HHHHHHT-S--EEEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-E--------ES
T ss_pred cEEECCCCCCHHHHHHhcC--EEEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCce--------eC
Confidence 5544 34556789999999 799887 458999999999999876554544222110 012222222 34
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHH
Q 043859 421 GREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARL 470 (484)
Q Consensus 421 ~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~ 470 (484)
+.++|.++|..++.+++ .++++-++..+..-. . ..|.++.+.++.+
T Consensus 322 ~~~eL~~~i~~~~~~~~--~~~~~~~~~~~~~~~-~-~Dg~s~eri~~~I 367 (369)
T PF04464_consen 322 NFEELIEAIENIIENPD--EYKEKREKFRDKFFK-Y-NDGNSSERIVNYI 367 (369)
T ss_dssp SHHHHHHHHTTHHHHHH--HTHHHHHHHHHHHST-T---S-HHHHHHHHH
T ss_pred CHHHHHHHHHhhhhCCH--HHHHHHHHHHHHhCC-C-CCchHHHHHHHHH
Confidence 78999999999998754 255555666655432 2 3444444444444
No 238
>PRK06749 replicative DNA helicase; Provisional
Probab=66.03 E-value=54 Score=33.24 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=41.2
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhh
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQS 58 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (484)
-=|++..-|+-|-..-.+.+|...+.. |..|.|++-+-....+..+++..
T Consensus 187 ~LiiIaarPgmGKTafal~ia~~~a~~-g~~v~~fSlEMs~~ql~~R~ls~ 236 (428)
T PRK06749 187 DFVVLGARPSMGKTAFALNVGLHAAKS-GAAVGLFSLEMSSKQLLKRMASC 236 (428)
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhc-CCCEEEEEeeCCHHHHHHHHHHh
Confidence 346777889999999999999999988 89999999987776666665554
No 239
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=65.56 E-value=66 Score=28.99 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=25.6
Q ss_pred cCCCccChHHHHHHHHHHHhcCCCeEEEEe
Q 043859 14 ASPGVGHVIPVLELGKRLVTLYNFQVTIFV 43 (484)
Q Consensus 14 ~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~ 43 (484)
+-...|-..=.+.|++.|+++ |++|.++=
T Consensus 7 t~t~~GKT~vs~~L~~~l~~~-g~~v~~~K 35 (222)
T PRK00090 7 TDTDVGKTVVTAALAQALREA-GYSVAGYK 35 (222)
T ss_pred CCCCcCHHHHHHHHHHHHHHc-CCceEEEe
Confidence 445789999999999999999 99998876
No 240
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=65.04 E-value=48 Score=30.80 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=31.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCC
Q 043859 10 AVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQ 47 (484)
Q Consensus 10 il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~ 47 (484)
+++..-|+.|...-..++|..+++. |++|.++..+..
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~-g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQ-GKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHC-CCCceEEeCCCc
Confidence 3444568999999999999999999 999999998864
No 241
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=64.59 E-value=76 Score=28.20 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=42.2
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHH---HhhhccCCCceEEEec
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESK---ILQSAMSSKLCHVIEI 70 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 70 (484)
.-|+|+-..|-|-..-...||..++.+ |..|.+++...++.-...+ ..+..+ +.+...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~----vp~~~~ 62 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILG----VPFYVA 62 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHT----EEEEES
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhc----cccchh
Confidence 356777778999999999999999999 9999999999887544433 234444 665543
No 242
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=64.39 E-value=11 Score=33.89 Aligned_cols=116 Identities=12% Similarity=0.037 Sum_probs=63.0
Q ss_pred CccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHh
Q 043859 17 GVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREI 96 (484)
Q Consensus 17 ~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (484)
+..|+.-.+.++..++.| |=.+.|+++.+........-....+ .+....... .+.+.........+.. -...
T Consensus 90 T~~~Lr~A~~fVa~vA~r-~GiILFv~tn~~~~~~ve~aA~r~~---gy~~~~~w~---~G~lTN~~~l~g~~~~-~~~~ 161 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHR-GGIILFVGTNNGFKDLVERAARRAG---GYSHNRKWL---GGLLTNARELFGALVR-KFLS 161 (251)
T ss_pred HHHHHHHHHHHHHHHHhc-CCeEEEEecCcchHHHHHHHHHHhc---Cceeeeeec---cceeecchhhcccccc-cccC
Confidence 667889999999999999 8999999998766443333333332 122211111 1111111111100000 0001
Q ss_pred hHHHHHHHHhcCCCCeEEE-eCCchh-hHHHHHHHhCCCeEEEecccH
Q 043859 97 KPAFRSAISALKTTPTALI-VDLFGT-ESLAIAEELQIPKYVYVGTNA 142 (484)
Q Consensus 97 ~~~l~~~l~~~~~~pD~VI-~D~~~~-~~~~~A~~lgIP~v~~~~~~~ 142 (484)
.+...-++... .+|+|| .|.... .+..=|.+++||.|.+.-+++
T Consensus 162 ~pd~~~f~~t~--~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 162 LPDALCFLPTL--TPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNC 207 (251)
T ss_pred CCcceeecccC--CcceeEecCcccccHHHHHHHHhCCCeEEEecCCC
Confidence 11222222233 778876 465544 455689999999999887666
No 243
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=63.87 E-value=1.2e+02 Score=30.15 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=34.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchh
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSA 50 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 50 (484)
-+++.-.|+.|--.=++++|..+.+. |..|.|++.++..+.
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EEs~~q 124 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEESPEQ 124 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCcCHHH
Confidence 45666668999999999999999998 899999998866544
No 244
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=63.78 E-value=26 Score=26.88 Aligned_cols=83 Identities=22% Similarity=0.248 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCC-CCCCCchHHHHHHHHHHHhhHHHHH
Q 043859 24 VLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISG-LVDPDAAVVTIISVIMREIKPAFRS 102 (484)
Q Consensus 24 ~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (484)
++.+|+.|.+. |+++. +++... ..++..+ +.+..+-...-.. . +.+ .. .+.+
T Consensus 2 ~~~~a~~l~~l-G~~i~--AT~gTa-----~~L~~~G----i~~~~v~~~~~~~~~-~~g-~~-------------~i~~ 54 (95)
T PF02142_consen 2 IVPLAKRLAEL-GFEIY--ATEGTA-----KFLKEHG----IEVTEVVNKIGEGES-PDG-RV-------------QIMD 54 (95)
T ss_dssp HHHHHHHHHHT-TSEEE--EEHHHH-----HHHHHTT------EEECCEEHSTG-G-GTH-CH-------------HHHH
T ss_pred HHHHHHHHHHC-CCEEE--EChHHH-----HHHHHcC----CCceeeeeecccCcc-CCc-hh-------------HHHH
Confidence 57899999999 97764 444333 3345555 4433222110000 0 000 00 5666
Q ss_pred HHHhcCCCCeEEEeCCchh------hH---HHHHHHhCCCeE
Q 043859 103 AISALKTTPTALIVDLFGT------ES---LAIAEELQIPKY 135 (484)
Q Consensus 103 ~l~~~~~~pD~VI~D~~~~------~~---~~~A~~lgIP~v 135 (484)
++++- ++|+||+-+... -+ ..+|...+||++
T Consensus 55 ~i~~~--~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 55 LIKNG--KIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHTT--SEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHcC--CeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 77766 999999764221 12 247888999976
No 245
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=63.72 E-value=1.1e+02 Score=27.37 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=52.5
Q ss_pred hhhccCCCccccccccCchhHHHHH-----hcCCceeec--ccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHH
Q 043859 355 IDILSHPSVGGFLSHCGWNSTLESI-----TNGVPMIVW--PLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKT 427 (484)
Q Consensus 355 ~~vL~~~~~~~~ItHgG~gs~~eal-----~~GvP~v~~--P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~ 427 (484)
...|..+. ++|..-|...+++.+ ..|+|+-++ |-.+|=..= +.+ +.-++-+.+.+... .-.-+..|++
T Consensus 64 ~~dl~~~~--lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~p-a~~-~~g~l~iaisT~G~-sP~la~~lr~ 138 (205)
T TIGR01470 64 ADILEGAF--LVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFP-SIV-DRSPVVVAISSGGA-APVLARLLRE 138 (205)
T ss_pred HHHhCCcE--EEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEe-eEE-EcCCEEEEEECCCC-CcHHHHHHHH
Confidence 44567777 788888877555443 467777333 322332211 222 23234444432101 1223467888
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHhh
Q 043859 428 MVRRILVDEEGYEIRAKVKELQRSAQKAW 456 (484)
Q Consensus 428 ~i~~vl~~~~~~~~~~~a~~l~~~~~~a~ 456 (484)
.|++.+.... ..+.+...++++.+++..
T Consensus 139 ~ie~~l~~~~-~~~~~~~~~~R~~~k~~~ 166 (205)
T TIGR01470 139 RIETLLPPSL-GDLATLAATWRDAVKKRL 166 (205)
T ss_pred HHHHhcchhH-HHHHHHHHHHHHHHHhhC
Confidence 8888886432 347777888888776443
No 246
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=63.60 E-value=62 Score=24.40 Aligned_cols=79 Identities=27% Similarity=0.310 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHH
Q 043859 24 VLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKPAFRSA 103 (484)
Q Consensus 24 ~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (484)
++.+++.|.+. |++|. +|.. .. ..++..+ +.+.+.-. ...+. .+.+.+.
T Consensus 2 ~~~~~~~l~~l-G~~i~-AT~g-Ta-----~~L~~~G----i~~~~~~~-ki~~~------------------~~~i~~~ 50 (90)
T smart00851 2 LVELAKRLAEL-GFELV-ATGG-TA-----KFLREAG----LPVKTLHP-KVHGG------------------ILAILDL 50 (90)
T ss_pred HHHHHHHHHHC-CCEEE-EccH-HH-----HHHHHCC----CcceeccC-CCCCC------------------CHHHHHH
Confidence 46899999999 99983 4443 33 3344444 44321111 00110 0134455
Q ss_pred HHhcCCCCeEEEeCCc---------hhhHHHHHHHhCCCeE
Q 043859 104 ISALKTTPTALIVDLF---------GTESLAIAEELQIPKY 135 (484)
Q Consensus 104 l~~~~~~pD~VI~D~~---------~~~~~~~A~~lgIP~v 135 (484)
+++- ++|+||.-.. .+..-.+|...+||++
T Consensus 51 i~~g--~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 51 IKNG--EIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred hcCC--CeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 5555 9999997432 1122347888999976
No 247
>PRK11823 DNA repair protein RadA; Provisional
Probab=63.55 E-value=53 Score=33.50 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=65.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTI 88 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 88 (484)
-+++.-.|+.|--.=+++++..+.++ |.+|.|++.++..+.+... ....+ +....+-. . .. .
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi~~r-a~rlg----~~~~~l~~---~---~e-~----- 143 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQIKLR-AERLG----LPSDNLYL---L---AE-T----- 143 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHHHHH-HHHcC----CChhcEEE---e---CC-C-----
Confidence 45666778999999999999999988 8999999998766544322 23333 11111000 0 00 0
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhh---------------------HHHHHHHhCCCeEEEec
Q 043859 89 ISVIMREIKPAFRSAISALKTTPTALIVDLFGTE---------------------SLAIAEELQIPKYVYVG 139 (484)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~---------------------~~~~A~~lgIP~v~~~~ 139 (484)
....+.+.+++. ++++||.|..... -..+|+..|++++.+..
T Consensus 144 -------~l~~i~~~i~~~--~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~h 206 (446)
T PRK11823 144 -------NLEAILATIEEE--KPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGH 206 (446)
T ss_pred -------CHHHHHHHHHhh--CCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 012333444556 9999999975421 12367888999888753
No 248
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=63.45 E-value=99 Score=26.71 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=37.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHH
Q 043859 10 AVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESK 54 (484)
Q Consensus 10 il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 54 (484)
+++.-.|+.|-..=.+.++....+. |..|.|++.+...+.+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCHHHHHHH
Confidence 5677778999999999999999888 9999999999877665444
No 249
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=63.40 E-value=16 Score=34.12 Aligned_cols=108 Identities=10% Similarity=0.057 Sum_probs=67.5
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCC-------ceEEEecCCCCCCC
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSK-------LCHVIEIPAPDISG 77 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~p~~~~~~ 77 (484)
.+.--+++.-.|+.|...-.++++...+++ |..|.|++.+...+.+.+.... ++... .+.+...-.... .
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~~-~ 97 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARS-FGWDLEVYIEKGKLAILDAFLSEK-G 97 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHHHHHHHHHH-cCCCHHHHhhcCCEEEEEcccccc-c
Confidence 344567788889999999999999999999 9999999999888776665533 33110 011111111000 0
Q ss_pred CCCCCchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchh
Q 043859 78 LVDPDAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGT 121 (484)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~ 121 (484)
... ...............++.++++. +++.+|.|....
T Consensus 98 ---~~~-~~~~~~~~~~~l~~~I~~~~~~~--~~~~~ViDsi~~ 135 (260)
T COG0467 98 ---LVS-IVVGDPLDLEELLDRIREIVEKE--GADRVVIDSITE 135 (260)
T ss_pred ---ccc-ccccCCccHHHHHHHHHHHHHHh--CCCEEEEeCCch
Confidence 000 00000112344556777888888 899999997663
No 250
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=62.90 E-value=12 Score=33.24 Aligned_cols=42 Identities=14% Similarity=-0.052 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
+.+||++.-.++.|=+.-...++++|+++ ||+|+++.++...
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~-G~~V~vv~T~aA~ 45 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDE-GAEVTPIVSYTVQ 45 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhC-cCEEEEEECHhHH
Confidence 45688777666665555479999999999 9999999998643
No 251
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=62.89 E-value=57 Score=29.76 Aligned_cols=35 Identities=34% Similarity=0.417 Sum_probs=25.2
Q ss_pred CCCCeEEE-eCCc-hhhHHHHHHHhCCCeEEEecccH
Q 043859 108 KTTPTALI-VDLF-GTESLAIAEELQIPKYVYVGTNA 142 (484)
Q Consensus 108 ~~~pD~VI-~D~~-~~~~~~~A~~lgIP~v~~~~~~~ 142 (484)
...||+|| .|+. ...+..=|.++|||+|.+.-+++
T Consensus 153 ~~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 153 KKLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred ccCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 35799877 5553 34456788999999999876554
No 252
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=62.80 E-value=87 Score=30.17 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=25.0
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
|||+|+..+..+ +...++|.++ ||+|..+.+.+
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~-~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELRED-NFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhC-CCcEEEEEcCC
Confidence 789998666543 6677888888 89998777654
No 253
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=62.52 E-value=73 Score=28.89 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=30.5
Q ss_pred eEEEEcC--CCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 9 HAVLLAS--PGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 9 ~il~~~~--p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
+|+.++. ++-|-..-..+|+-.|+++ |+.|.++-..-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~-GkKv~liD~Di 41 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQL-GKKVVLIDFDI 41 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHc-CCeEEEEecCc
Confidence 3444444 5999999999999999999 99999988774
No 254
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=61.19 E-value=97 Score=31.89 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=53.8
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHH
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVV 86 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (484)
.+++++..-+ .-.+++++.|.+- |-+|..+.+......-.+.+-.... ....+. ++.
T Consensus 324 Gk~vaI~~~~-----~~~~~la~~l~El-Gm~v~~~~~~~~~~~~~~~l~~~~~--~~~~v~-------~d~-------- 380 (475)
T PRK14478 324 GKRVLLYTGG-----VKSWSVVKALQEL-GMEVVGTSVKKSTDEDKERIKELMG--PDAHMI-------DDA-------- 380 (475)
T ss_pred CCEEEEEcCC-----chHHHHHHHHHHC-CCEEEEEEEECCCHHHHHHHHHHcC--CCcEEE-------eCC--------
Confidence 4577775443 3455888888888 9999888776543221111111111 011100 000
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEE
Q 043859 87 TIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYV 136 (484)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~ 136 (484)
...++.+.+++. +||++|.. .....+|+++|||++.
T Consensus 381 ---------~~~e~~~~i~~~--~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 381 ---------NPRELYKMLKEA--KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred ---------CHHHHHHHHhhc--CCCEEEec---CchhhhhhhcCCCEEE
Confidence 112344556667 99999997 3355789999999884
No 255
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=61.06 E-value=31 Score=34.24 Aligned_cols=103 Identities=13% Similarity=0.181 Sum_probs=68.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTI 88 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 88 (484)
-|++---|+.|--.=+++++..|+++ | .|.|++.++....+. .....++ +. . ++
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~-~-~vLYVsGEES~~Qik-lRA~RL~----~~-----~---~~----------- 148 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKR-G-KVLYVSGEESLQQIK-LRADRLG----LP-----T---NN----------- 148 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhc-C-cEEEEeCCcCHHHHH-HHHHHhC----CC-----c---cc-----------
Confidence 46667779999999999999999999 8 999999997654422 1112222 10 0 11
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchh---------------------hHHHHHHHhCCCeEEEec
Q 043859 89 ISVIMREIKPAFRSAISALKTTPTALIVDLFGT---------------------ESLAIAEELQIPKYVYVG 139 (484)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~---------------------~~~~~A~~lgIP~v~~~~ 139 (484)
+..+.....+.+.+.+++. +||++|.|.... ....+|+..||+.+++..
T Consensus 149 l~l~aEt~~e~I~~~l~~~--~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 149 LYLLAETNLEDIIAELEQE--KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred eEEehhcCHHHHHHHHHhc--CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 1122333455666777777 999999995321 112478888999887764
No 256
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=60.73 E-value=69 Score=32.48 Aligned_cols=35 Identities=29% Similarity=0.254 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 99 AFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
++.+++++. +||++|.+.. ...+|+++|||++.+.
T Consensus 363 e~~~~l~~~--~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 363 DIESYAKEL--KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHhc--CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 566777778 9999999964 4688999999998764
No 257
>PRK10867 signal recognition particle protein; Provisional
Probab=60.21 E-value=68 Score=32.50 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHH
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESK 54 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 54 (484)
+.-|+|+..++.|-..-...||..|+++.|+.|.+++.+.++.....+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQ 147 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQ 147 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHH
Confidence 445677777899999999999999987537999999999887654433
No 258
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=59.63 E-value=51 Score=29.90 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHH
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAE 52 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~ 52 (484)
+.--+++...|+.|-..=.+.++.+..++ |..|.|++.+...+.+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e~~~~~i~ 64 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTEESRESII 64 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHH
Confidence 34467777778999988888888777778 89999999987665543
No 259
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=59.60 E-value=1.2e+02 Score=26.66 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=29.0
Q ss_pred ccChHHHH-HHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCC
Q 043859 18 VGHVIPVL-ELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPA 72 (484)
Q Consensus 18 ~GHv~P~l-~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 72 (484)
+|=+.-++ .|+..|+++ ||+||+.+.....+. ...+.. +++...+|.
T Consensus 16 YGGfET~ve~L~~~l~~~-g~~v~Vyc~~~~~~~---~~~~y~----gv~l~~i~~ 63 (185)
T PF09314_consen 16 YGGFETFVEELAPRLVSK-GIDVTVYCRSDYYPY---KEFEYN----GVRLVYIPA 63 (185)
T ss_pred cCcHHHHHHHHHHHHhcC-CceEEEEEccCCCCC---CCcccC----CeEEEEeCC
Confidence 55554443 577778888 999999998754421 111122 377777764
No 260
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=59.56 E-value=7.2 Score=34.36 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCccChHH------------HHHHHHHHHhcCCCeEEEEecCC
Q 043859 7 KPHAVLLASPGVGHVIP------------VLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P------------~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
.+||++...|+.=++.| -..||+++..+ |++||++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~-Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARR-GAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHT-T-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHC-CCEEEEEecCc
Confidence 45666666666555544 36899999999 99999999984
No 261
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=59.30 E-value=66 Score=32.42 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=52.8
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHH-hcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchH
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLV-TLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAV 85 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 85 (484)
.++|++..-+. -.+.+++.|. +- |-+|..+++........+..++..+ ...+. + ++.
T Consensus 288 Gk~vai~~~~~-----~~~~la~~l~~el-G~~v~~i~~~~~~~~~~~~~~~~~~---~~~~~-v-----~d~------- 345 (415)
T cd01977 288 GKKVCIWTGGP-----KLWHWTKVIEDEL-GMQVVAMSSKFGHQEDFEKVIARGG---EGTIY-I-----DDP------- 345 (415)
T ss_pred CCEEEEECCCc-----hHHHHHHHHHHhc-CCEEEEEEEEeccHHHHHHHHHhcC---CceEE-E-----eCC-------
Confidence 46777754442 2588899886 67 8999887664212111112222222 01110 0 000
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 86 VTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
..-.+.+.+++. +||+||.....- .+|+++|||++.+.
T Consensus 346 ----------~~~e~~~~~~~~--~pdliig~s~~~---~~a~~lgip~~~~~ 383 (415)
T cd01977 346 ----------NELEFFEILEML--KPDIILTGPRVG---ELVKKLHVPYVNIH 383 (415)
T ss_pred ----------CHHHHHHHHHhc--CCCEEEecCccc---hhhhhcCCCEEecc
Confidence 001233445667 999999885432 58999999998763
No 262
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=59.17 E-value=1.1e+02 Score=25.84 Aligned_cols=141 Identities=13% Similarity=0.187 Sum_probs=79.2
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhCCCcEE-EEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEec
Q 043859 271 VLYVSFGSGGTLTYEQITELAWGLELSQQRFI-WVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVP 349 (484)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~ 349 (484)
.|-|-+||.. +-+..+..++.|+..++.+- +++..+ .-|+.+.
T Consensus 4 ~V~IIMGS~S--D~~~mk~Aa~~L~~fgi~ye~~VvSAH-----------------------RTPe~m~----------- 47 (162)
T COG0041 4 KVGIIMGSKS--DWDTMKKAAEILEEFGVPYEVRVVSAH-----------------------RTPEKMF----------- 47 (162)
T ss_pred eEEEEecCcc--hHHHHHHHHHHHHHcCCCeEEEEEecc-----------------------CCHHHHH-----------
Confidence 4667788844 45667888888888887764 444333 2333221
Q ss_pred CCcchhhhccCCCccccccccCch----hHHHHHhcCCceeecccccc---cchhHHHHHhhhcceEEeeecCCCCccCH
Q 043859 350 QWAPQIDILSHPSVGGFLSHCGWN----STLESITNGVPMIVWPLYSE---QRMNATILTEELGVAIRSKVLPSKGVVGR 422 (484)
Q Consensus 350 ~~ipq~~vL~~~~~~~~ItHgG~g----s~~eal~~GvP~v~~P~~~D---Q~~na~rv~~~~G~g~~l~~~~~~~~~~~ 422 (484)
.|+... ....++++|.-.|.- .+.-+ ..-+|+|.+|.... --+--.-++ ++--|+.+.+....+..++
T Consensus 48 ~ya~~a---~~~g~~viIAgAGgAAHLPGmvAa-~T~lPViGVPv~s~~L~GlDSL~SiV-QMP~GvPVaTvaIg~a~NA 122 (162)
T COG0041 48 EYAEEA---EERGVKVIIAGAGGAAHLPGMVAA-KTPLPVIGVPVQSKALSGLDSLLSIV-QMPAGVPVATVAIGNAANA 122 (162)
T ss_pred HHHHHH---HHCCCeEEEecCcchhhcchhhhh-cCCCCeEeccCccccccchHHHHHHh-cCCCCCeeEEEeecchhhH
Confidence 111111 122233466655532 22333 33789999998742 223333344 7777777665444344555
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh
Q 043859 423 EEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAW 456 (484)
Q Consensus 423 ~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~ 456 (484)
.-++..|.. +.|+. ++++.+++++..++.+
T Consensus 123 allAa~ILa-~~d~~---l~~kl~~~r~~~~~~V 152 (162)
T COG0041 123 ALLAAQILA-IKDPE---LAEKLAEFREAQTEEV 152 (162)
T ss_pred HHHHHHHHc-CCCHH---HHHHHHHHHHHHHHHH
Confidence 555544422 34555 9999999999877555
No 263
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=58.03 E-value=79 Score=29.48 Aligned_cols=35 Identities=34% Similarity=0.341 Sum_probs=25.1
Q ss_pred CCCCeEEE-eCCc-hhhHHHHHHHhCCCeEEEecccH
Q 043859 108 KTTPTALI-VDLF-GTESLAIAEELQIPKYVYVGTNA 142 (484)
Q Consensus 108 ~~~pD~VI-~D~~-~~~~~~~A~~lgIP~v~~~~~~~ 142 (484)
...||+|| .|+. ...+..=|.++|||+|.+.-+++
T Consensus 155 ~~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 155 GGLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred ccCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 35799877 5543 33456789999999999876554
No 264
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=57.64 E-value=64 Score=27.45 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=25.4
Q ss_pred EcCCCccChHHHHHHHHHHHhcCCCeEEEE
Q 043859 13 LASPGVGHVIPVLELGKRLVTLYNFQVTIF 42 (484)
Q Consensus 13 ~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~ 42 (484)
.+-++.|-..=.+.|++.|.++ |.+|.++
T Consensus 4 ~t~~~~GKT~va~~L~~~l~~~-g~~V~~~ 32 (166)
T TIGR00347 4 GTDTGVGKTVASSALAAKLKKA-GYSVGYY 32 (166)
T ss_pred cCCCCccHHHHHHHHHHHHHHC-CCcEEEE
Confidence 3457888899999999999999 9999986
No 265
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=57.59 E-value=34 Score=30.81 Aligned_cols=94 Identities=11% Similarity=0.075 Sum_probs=53.3
Q ss_pred CCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccC-------CCceEEEecCCCCCCCCCCCCchHHHH
Q 043859 16 PGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMS-------SKLCHVIEIPAPDISGLVDPDAAVVTI 88 (484)
Q Consensus 16 p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~p~~~~~~~~~~~~~~~~~ 88 (484)
-+.|---=..+++.-+... ||.|++++++.......++. +.... ...+.|.++........
T Consensus 37 ~~tGKSvLsqr~~YG~L~~-g~~v~yvsTe~T~refi~qm-~sl~ydv~~~~l~G~l~~~~~~~~~~~~~---------- 104 (235)
T COG2874 37 NGTGKSVLSQRFAYGFLMN-GYRVTYVSTELTVREFIKQM-ESLSYDVSDFLLSGRLLFFPVNLEPVNWG---------- 104 (235)
T ss_pred CCccHHHHHHHHHHHHHhC-CceEEEEEechhHHHHHHHH-HhcCCCchHHHhcceeEEEEecccccccC----------
Confidence 3778888888999999998 99999999997653322221 22221 11233333322211111
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHH
Q 043859 89 ISVIMREIKPAFRSAISALKTTPTALIVDLFGTESL 124 (484)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~ 124 (484)
....+.....+.+.++.+ +-|+||.|.+.+.+.
T Consensus 105 -~~~~~~~L~~l~~~~k~~--~~dViIIDSls~~~~ 137 (235)
T COG2874 105 -RRSARKLLDLLLEFIKRW--EKDVIIIDSLSAFAT 137 (235)
T ss_pred -hHHHHHHHHHHHhhHHhh--cCCEEEEecccHHhh
Confidence 111222223334444566 899999998876443
No 266
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=56.87 E-value=69 Score=32.73 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=61.9
Q ss_pred eEEEEcC-CCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhh-ccCCCceEEEecCCCCCCCCCCCCchHH
Q 043859 9 HAVLLAS-PGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQS-AMSSKLCHVIEIPAPDISGLVDPDAAVV 86 (484)
Q Consensus 9 ~il~~~~-p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (484)
+|+|... .+.|-..=...|++.|+++ |++|..+-+.+.. ........ .+ . +....+.. ..
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~-G~~V~~fK~Gpd~--~d~~~~~~~~g----~-----~~~~ld~~-~~----- 66 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRR-GLRVQPFKVGPDY--IDPAYHTAATG----R-----PSRNLDSW-MM----- 66 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhC-CCCcceeecCCCc--ccHHHHHHHhC----C-----CcccCCce-eC-----
Confidence 3555533 4688999999999999999 9999988764321 11111111 11 0 11111100 00
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCc------------hhhHHHHHHHhCCCeEEEecc
Q 043859 87 TIISVIMREIKPAFRSAISALKTTPTALIVDLF------------GTESLAIAEELQIPKYVYVGT 140 (484)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~------------~~~~~~~A~~lgIP~v~~~~~ 140 (484)
..+.+++.++++..+.|++|++.. ......+|+.++.|++.+...
T Consensus 67 ---------~~~~v~~~~~~~~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~ 123 (451)
T PRK01077 67 ---------GEELVRALFARAAQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDA 123 (451)
T ss_pred ---------CHHHHHHHHHHhcccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECC
Confidence 123455566555557899997533 123568999999999988754
No 267
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=55.83 E-value=25 Score=34.03 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=32.6
Q ss_pred HHHHHhhHHHHHHHHhcCCCCeEEEeCCchhh-------HH---HHHHHhCCCeEEE
Q 043859 91 VIMREIKPAFRSAISALKTTPTALIVDLFGTE-------SL---AIAEELQIPKYVY 137 (484)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~-------~~---~~A~~lgIP~v~~ 137 (484)
....++...+.++++++ +||+||+.+.+.+ +. .+.++++||.++-
T Consensus 63 en~eea~~~i~~mv~~~--~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 63 ENKEEALKKILEMVKKL--KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred hCHHHHHHHHHHHHHhc--CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 34455667788889999 9999999875532 21 2566899998863
No 268
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=54.86 E-value=29 Score=25.60 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEE
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIF 42 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~ 42 (484)
+.-++++..+...|...+-.+|+.|.+. |..|...
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~-G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQ-GYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 4789999999999999999999999999 8988743
No 269
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=54.42 E-value=76 Score=32.48 Aligned_cols=94 Identities=14% Similarity=0.149 Sum_probs=53.8
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHH-hcCCCeEEEEecCCC-chhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCch
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLV-TLYNFQVTIFVVASQ-TSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAA 84 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~-~r~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 84 (484)
.+|++++..+. -.+.+++.|. +- |-+|..+++... .+.+ +...+..+ . ..+. + ++.
T Consensus 325 GkrvaI~~~~~-----~~~~l~~~l~~El-Gmevv~~~~~~~~~~~~-~~~~~~~~--~-~~~~-i-----~d~------ 382 (457)
T TIGR01284 325 GKKVWVWSGGP-----KLWHWPRPLEDEL-GMEVVAVSTKFGHEDDY-EKIIARVR--E-GTVI-I-----DDP------ 382 (457)
T ss_pred CCEEEEECCCc-----HHHHHHHHHHHhC-CCEEEEEEEEeCCHHHH-HHHHHhcC--C-CeEE-E-----eCC------
Confidence 45777755442 3378888886 57 899888765432 2221 11222222 0 0000 0 000
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 85 VVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
....+.+.+++. +||++|.... ...+|+++|||++.+.
T Consensus 383 -----------~~~e~~~~i~~~--~pDllig~~~---~~~~a~k~gip~~~~~ 420 (457)
T TIGR01284 383 -----------NELELEEIIEKY--KPDIILTGIR---EGELAKKLGVPYINIH 420 (457)
T ss_pred -----------CHHHHHHHHHhc--CCCEEEecCC---cchhhhhcCCCEEEcc
Confidence 112345667777 9999998853 3568999999998753
No 270
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=54.22 E-value=34 Score=27.45 Aligned_cols=46 Identities=15% Similarity=-0.017 Sum_probs=37.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKI 55 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~ 55 (484)
+++..+.++..|-....-++..|.++ |++|.++......+.+.+..
T Consensus 1 ~~l~~~~~~~~h~lg~~~~~~~l~~~-G~~v~~l~~~~~~~~~~~~i 46 (125)
T cd02065 1 KVLGATVGGDVHDIGKNIVAIALRDN-GFEVIDLGVDVPPEEIVEAA 46 (125)
T ss_pred CEEEEEcCCchhhHHHHHHHHHHHHC-CCEEEEcCCCCCHHHHHHHH
Confidence 36788889999999999999999999 99999998765555444443
No 271
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=54.18 E-value=57 Score=30.44 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=37.0
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHh
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKIL 56 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~ 56 (484)
--+++...++.|-..-+++++..+....|+.|.|++.+.....+.+.+.
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~ 79 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLL 79 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHH
Confidence 3566677789999999999999885432899999999876655554443
No 272
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=54.16 E-value=85 Score=29.24 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=31.2
Q ss_pred CCcchhhhccCCCccccccccCchhHHHHHhcCCceeec
Q 043859 350 QWAPQIDILSHPSVGGFLSHCGWNSTLESITNGVPMIVW 388 (484)
Q Consensus 350 ~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~ 388 (484)
++=|+.+.|+.++- .++|---.|-.+||.+.|+|+.++
T Consensus 234 g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 45599999999994 555666788899999999999876
No 273
>PLN02470 acetolactate synthase
Probab=53.78 E-value=92 Score=33.03 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=23.4
Q ss_pred CccccccccCch------hHHHHHhcCCceeecc
Q 043859 362 SVGGFLSHCGWN------STLESITNGVPMIVWP 389 (484)
Q Consensus 362 ~~~~~ItHgG~g------s~~eal~~GvP~v~~P 389 (484)
.++++++|.|-| .+.+|.+.++|||++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 455888888854 7889999999999995
No 274
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=53.30 E-value=43 Score=27.62 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=41.2
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhh
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQ 57 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (484)
++.||++....+.+|-.----++..|+.. |++|.........+.+.+...+
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~-GfeVi~lg~~~s~e~~v~aa~e 51 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADL-GFDVDVGPLFQTPEEIARQAVE 51 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhC-CcEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999999999998 9999998877555544444333
No 275
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=53.29 E-value=19 Score=33.48 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=37.5
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
.+..++|.-.||.|-..=..++|.+|.++ |+.|+|++.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-g~sv~f~~~~el~ 145 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA-GISVLFITAPDLL 145 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEEHHHHH
Confidence 45689999999999999999999999988 9999999999644
No 276
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=53.01 E-value=1.1e+02 Score=28.14 Aligned_cols=101 Identities=11% Similarity=0.099 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEecCCCchhHHH---HHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHhh
Q 043859 21 VIPVLELGKRLVTLYNFQVTIFVVASQTSAAES---KILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIK 97 (484)
Q Consensus 21 v~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (484)
+.|..++.++|++- |.+=.-+.+|+. +.+.. ..++..+ +++..+......+. .+ ..+...
T Consensus 105 tt~~~A~~~AL~al-g~~RIalvTPY~-~~v~~~~~~~l~~~G----~eV~~~~~~~~~~~----~~-------ia~i~p 167 (239)
T TIGR02990 105 VTPSSAAVDGLAAL-GVRRISLLTPYT-PETSRPMAQYFAVRG----FEIVNFTCLGLTDD----RE-------MARISP 167 (239)
T ss_pred eCHHHHHHHHHHHc-CCCEEEEECCCc-HHHHHHHHHHHHhCC----cEEeeeeccCCCCC----ce-------eeecCH
Confidence 56888899999988 754444444433 33333 3445555 66655533222111 00 011112
Q ss_pred HHHHHHHHhc-CCCCeEEEeCCchhhHHH----HHHHhCCCeEEEe
Q 043859 98 PAFRSAISAL-KTTPTALIVDLFGTESLA----IAEELQIPKYVYV 138 (484)
Q Consensus 98 ~~l~~~l~~~-~~~pD~VI~D~~~~~~~~----~A~~lgIP~v~~~ 138 (484)
..+.+.+++. ...+|.|+.-.....+.. +=+.+|+|++.-.
T Consensus 168 ~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSN 213 (239)
T TIGR02990 168 DCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQAIGKPVVTSN 213 (239)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHH
Confidence 2233333433 347898886644333332 4455899987643
No 277
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=52.74 E-value=40 Score=36.81 Aligned_cols=113 Identities=19% Similarity=0.086 Sum_probs=66.9
Q ss_pred EecCCcchh---hhccCCCccccccc---cCch-hHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCc
Q 043859 347 VVPQWAPQI---DILSHPSVGGFLSH---CGWN-STLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGV 419 (484)
Q Consensus 347 ~v~~~ipq~---~vL~~~~~~~~ItH---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~ 419 (484)
.+.+++++. +++..+++ |+.- -|+| ++.|++++|+|-...|+..+--.-+. ++.-|+.++ -
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~----~l~~~llv~------P 412 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA----ELAEALLVN------P 412 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH----HhCcCeEEC------C
Confidence 344677765 47788885 4432 3544 78899999776322332222111121 222367665 3
Q ss_pred cCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhhhh
Q 043859 420 VGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGMMT 478 (484)
Q Consensus 420 ~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~ 478 (484)
.+.++++++|.++|+.+.. +.+++.+++++.++ .-+...-++.+++.+.+..
T Consensus 413 ~d~~~la~ai~~~l~~~~~-e~~~r~~~~~~~v~------~~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 413 NDIEGIAAAIKRALEMPEE-EQRERMQAMQERLR------RYDVHKWASDFLDELREAA 464 (726)
T ss_pred CCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH------hCCHHHHHHHHHHHHHHHH
Confidence 4789999999999986532 24545555554432 2456667777777777663
No 278
>CHL00067 rps2 ribosomal protein S2
Probab=52.39 E-value=1.5e+02 Score=27.07 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=25.0
Q ss_pred CCCCeEEE-eCCch-hhHHHHHHHhCCCeEEEecccH
Q 043859 108 KTTPTALI-VDLFG-TESLAIAEELQIPKYVYVGTNA 142 (484)
Q Consensus 108 ~~~pD~VI-~D~~~-~~~~~~A~~lgIP~v~~~~~~~ 142 (484)
...||+|| .|+.. .-+..=|.++|||+|.+.-+++
T Consensus 159 ~~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 159 TKLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred ccCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCC
Confidence 35788877 45433 3456789999999999876554
No 279
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=52.37 E-value=1.4e+02 Score=25.58 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=35.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhH
Q 043859 10 AVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAA 51 (484)
Q Consensus 10 il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~ 51 (484)
+++.-.|+.|-......++..|.++ |.+|.++..+.++...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D~~~~~~ 43 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAADTYRPAA 43 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCCChHH
Confidence 5677788999999999999999999 9999999988776443
No 280
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=52.17 E-value=1.1e+02 Score=23.91 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=52.0
Q ss_pred cChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHhhH
Q 043859 19 GHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKP 98 (484)
Q Consensus 19 GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (484)
++-.-++.+++.|.+. |+++. +++.... .+...+ +.+..+.... + ..+
T Consensus 10 ~~k~~~~~~~~~l~~~-G~~l~--aT~gT~~-----~l~~~g----i~~~~v~~~~--~------------------~~~ 57 (110)
T cd01424 10 RDKPEAVEIAKRLAEL-GFKLV--ATEGTAK-----YLQEAG----IPVEVVNKVS--E------------------GRP 57 (110)
T ss_pred CcHhHHHHHHHHHHHC-CCEEE--EchHHHH-----HHHHcC----CeEEEEeecC--C------------------Cch
Confidence 3566788999999999 99984 4443332 334444 4433332211 0 224
Q ss_pred HHHHHHHhcCCCCeEEEeCCc-------hhhHHHHHHHhCCCeEE
Q 043859 99 AFRSAISALKTTPTALIVDLF-------GTESLAIAEELQIPKYV 136 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~~-------~~~~~~~A~~lgIP~v~ 136 (484)
.+.+.+++- ++|+||.-+- .+.--..|-..|||+++
T Consensus 58 ~i~~~i~~~--~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 58 NIVDLIKNG--EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred hHHHHHHcC--CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 456666666 9999998432 23334589999999874
No 281
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=51.68 E-value=92 Score=31.84 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=34.8
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchh
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSA 50 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 50 (484)
-+++.--|+.|--.=+++++..+.++ |..|.|++.++....
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EEs~~q 136 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEESLQQ 136 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcCCHHH
Confidence 45666678999999999999999998 899999999876544
No 282
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=51.16 E-value=1.7e+02 Score=25.48 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=47.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCC-chhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQ-TSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
.|-+.+..+.|-....+.+|-+-.-+ |.+|.++..=.. ...=+...+...+ ++.+......... .......
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~-G~rV~ivQFlKg~~~~GE~~~l~~l~---~~~~~~~g~~f~~----~~~~~~~ 76 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGH-GMRVLIVQFLKGGRYSGELKALKKLP---NVEIERFGKGFVW----RMNEEEE 76 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCT-T--EEEEESS--SS--HHHHHHGGGT-----EEEE--TT--------GGGHHH
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhC-CCEEEEEEEecCCCCcCHHHHHHhCC---eEEEEEcCCcccc----cCCCcHH
Confidence 46778888888888766666665555 788988876544 2222233445554 4776666542211 1111111
Q ss_pred HHHHHHHHhhHHHHHHHHhc-CCCCeEEEeCCchh
Q 043859 88 IISVIMREIKPAFRSAISAL-KTTPTALIVDLFGT 121 (484)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~-~~~pD~VI~D~~~~ 121 (484)
. ...+...+....+.+ +..+|+||.|....
T Consensus 77 ~----~~~~~~~~~~a~~~i~~~~~dlvILDEi~~ 107 (172)
T PF02572_consen 77 D----RAAAREGLEEAKEAISSGEYDLVILDEINY 107 (172)
T ss_dssp H----HHHHHHHHHHHHHHTT-TT-SEEEEETHHH
T ss_pred H----HHHHHHHHHHHHHHHhCCCCCEEEEcchHH
Confidence 1 222233333333333 34999999997655
No 283
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=51.15 E-value=1.7e+02 Score=25.76 Aligned_cols=103 Identities=13% Similarity=0.040 Sum_probs=57.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc-hhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT-SAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
-|.+++..+-|-....+.+|-+-.-+ |.+|.++.-=... ..=+...++..+ ..+.|..++.....+. .. ..+
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~Gh-G~rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~~g~tw~~--~~--~~~ 102 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGH-GLRVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMGEGFTWET--QD--REA 102 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcC-CCEEEEEEEeecCcchhHHHHHHhhc--cceeEEecCCceeCCC--cC--cHH
Confidence 46677778888887777777666665 7888877632211 111223334432 3477777774332222 11 111
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchh
Q 043859 88 IISVIMREIKPAFRSAISALKTTPTALIVDLFGT 121 (484)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~ 121 (484)
.. ..........++.+.+- +.|+||.|.+.+
T Consensus 103 d~-~aa~~~w~~a~~~l~~~--~ydlviLDEl~~ 133 (198)
T COG2109 103 DI-AAAKAGWEHAKEALADG--KYDLVILDELNY 133 (198)
T ss_pred HH-HHHHHHHHHHHHHHhCC--CCCEEEEehhhH
Confidence 12 23333334444444444 999999998765
No 284
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=50.93 E-value=25 Score=35.89 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=42.0
Q ss_pred ccCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHH
Q 043859 369 HCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVK 446 (484)
Q Consensus 369 HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~ 446 (484)
|=|. ++.||+++|+|+++. ++..=+..| +..=-|...++ ..-....+++++.++..|++ ++.+..
T Consensus 377 ~FGi-v~IEAMa~glPvvAt----~~GGP~EiV-~~~~tG~l~dp----~~e~~~~~a~~~~kl~~~p~---l~~~~~ 441 (495)
T KOG0853|consen 377 HFGI-VPIEAMACGLPVVAT----NNGGPAEIV-VHGVTGLLIDP----GQEAVAELADALLKLRRDPE---LWARMG 441 (495)
T ss_pred Cccc-eeHHHHhcCCCEEEe----cCCCceEEE-EcCCcceeeCC----chHHHHHHHHHHHHHhcCHH---HHHHHH
Confidence 3344 889999999999987 344444444 34344555542 12223379999999999987 554443
No 285
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=50.51 E-value=2e+02 Score=26.15 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=21.8
Q ss_pred CCeEEEeCCchhhHH---HHHHHhCCCeEE
Q 043859 110 TPTALIVDLFGTESL---AIAEELQIPKYV 136 (484)
Q Consensus 110 ~pD~VI~D~~~~~~~---~~A~~lgIP~v~ 136 (484)
..|+||.|.+.+.-. .+++..|+|++.
T Consensus 178 gadlIvLDCmGYt~~~r~~~~~~~g~PVlL 207 (221)
T PF07302_consen 178 GADLIVLDCMGYTQEMRDIVQRALGKPVLL 207 (221)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHhCCCEEe
Confidence 999999998766544 488889999664
No 286
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=50.46 E-value=77 Score=34.48 Aligned_cols=43 Identities=33% Similarity=0.418 Sum_probs=38.4
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
..|+||.|-..|+-|-.+-|+.=|++|.+. |.+|++-.-+.-.
T Consensus 20 RGklkIf~G~apGVGKTyaML~~a~~~~~~-G~DvviG~vEtHg 62 (890)
T COG2205 20 RGKLKIFLGAAPGVGKTYAMLSEAQRLLAE-GVDVVIGVVETHG 62 (890)
T ss_pred CCceEEEeecCCCccHHHHHHHHHHHHHHc-CCcEEEEEecCCC
Confidence 347899999999999999999999999999 9999988877543
No 287
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=50.35 E-value=1.7e+02 Score=25.36 Aligned_cols=97 Identities=16% Similarity=0.188 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHH
Q 043859 23 PVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKPAFRS 102 (484)
Q Consensus 23 P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (484)
-++..|+.|.+. |-+|+.++.....+..........+. -+.+.+....+... ........+.+
T Consensus 23 e~l~~A~~l~~~-~~~v~~v~~G~~~~~~~~~~~~~~Ga---d~v~~~~~~~~~~~-------------~~~~~a~~l~~ 85 (181)
T cd01985 23 EAVEAALRLKEY-GGEVTALVIGPPAAEVALREALAMGA---DKVLLVEDPALAGY-------------DPEATAKALAA 85 (181)
T ss_pred HHHHHHHHHhhc-CCeEEEEEECChHHHHHHHHHHHhCC---CEEEEEecCcccCC-------------ChHHHHHHHHH
Confidence 677889999764 56777777654332211011122331 12222221111110 01112334555
Q ss_pred HHHhcCCCCeEEEeCCchh---hHHHHHHHhCCCeEEEe
Q 043859 103 AISALKTTPTALIVDLFGT---ESLAIAEELQIPKYVYV 138 (484)
Q Consensus 103 ~l~~~~~~pD~VI~D~~~~---~~~~~A~~lgIP~v~~~ 138 (484)
++++. .||+|+.-.... .+..+|.+||.|++.=.
T Consensus 86 ~i~~~--~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv 122 (181)
T cd01985 86 LIKKE--KPDLILAGATSIGKQLAPRVAALLGVPQISDV 122 (181)
T ss_pred HHHHh--CCCEEEECCcccccCHHHHHHHHhCCCcceeE
Confidence 66667 899999775444 34569999999988743
No 288
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=50.09 E-value=1.9e+02 Score=25.80 Aligned_cols=108 Identities=10% Similarity=0.046 Sum_probs=57.0
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcC-CCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLY-NFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVV 86 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (484)
|||++++.+.-+- +.+|.+++.+.. +++|.++.+...... .....+..+ +.+..++......
T Consensus 2 ~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~~~~~~-~~~~a~~~g----Ip~~~~~~~~~~~--------- 64 (200)
T PRK05647 2 KRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISDRPDAY-GLERAEAAG----IPTFVLDHKDFPS--------- 64 (200)
T ss_pred ceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEecCccch-HHHHHHHcC----CCEEEECccccCc---------
Confidence 6888888876433 346666777651 378887655533222 223344444 5555544322110
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCc-hhhHHHHHHHhCCCeEEEecc
Q 043859 87 TIISVIMREIKPAFRSAISALKTTPTALIVDLF-GTESLAIAEELQIPKYVYVGT 140 (484)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~-~~~~~~~A~~lgIP~v~~~~~ 140 (484)
.....+.+.+.++++ +||++|+-.+ ......+-....-.++-++++
T Consensus 65 ------~~~~~~~~~~~l~~~--~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHps 111 (200)
T PRK05647 65 ------REAFDAALVEALDAY--QPDLVVLAGFMRILGPTFVSAYEGRIINIHPS 111 (200)
T ss_pred ------hhHhHHHHHHHHHHh--CcCEEEhHHhhhhCCHHHHhhccCCEEEEeCc
Confidence 001123556777788 9999987533 222223333444445666554
No 289
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.95 E-value=1.2e+02 Score=29.98 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=41.3
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHH
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKI 55 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~ 55 (484)
++--|+|+-.-+.|-..-+-.+|..++++ |..+-+++.+.|++-.-.++
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkk-G~K~~LvcaDTFRagAfDQL 148 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKK-GYKVALVCADTFRAGAFDQL 148 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhc-CCceeEEeecccccchHHHH
Confidence 34567888888999999999999999999 99999999999885544444
No 290
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=49.22 E-value=2.5e+02 Score=27.03 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=58.1
Q ss_pred CCeEEEEcCCCcc-----ChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCC
Q 043859 7 KPHAVLLASPGVG-----HVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDP 81 (484)
Q Consensus 7 ~~~il~~~~p~~G-----Hv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (484)
+.-|+|.+..+.| ...-+..|++.|.++ |.+|.+++++.-.+. .+.+.+..+ -....+ .+
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~-~~~ivl~G~~~e~~~-~~~i~~~~~----~~~~~l-----~g---- 238 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ-GYQVVLFGSAKDHPA-GNEIEALLP----GELRNL-----AG---- 238 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHC-CCEEEEEEChhhHHH-HHHHHHhCC----cccccC-----CC----
Confidence 3345555544333 234678999999988 899999988754332 122222222 111111 00
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEec
Q 043859 82 DAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVG 139 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~ 139 (484)
.. ...++..+++ +-|++|+- ..+...+|..+|+|+|.++.
T Consensus 239 ~~------------sL~el~ali~----~a~l~I~~--DSGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 239 ET------------SLDEAVDLIA----LAKAVVTN--DSGLMHVAAALNRPLVALYG 278 (334)
T ss_pred CC------------CHHHHHHHHH----hCCEEEee--CCHHHHHHHHcCCCEEEEEC
Confidence 00 1223445555 55899976 45567899999999998875
No 291
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=49.14 E-value=97 Score=34.91 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchH
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAV 85 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 85 (484)
..+|++++.-+. -.+.+++.|.+- |-+|..+++......-.....+..+ .+..++ + +.
T Consensus 319 ~GKrv~i~~g~~-----~~~~la~~l~el-Gmevv~~g~~~~~~~d~~~~~~~~~--~~~~vi-------~-----~~-- 376 (917)
T PRK14477 319 EGKRVVLFTGGV-----KTWSMVNALREL-GVEVLAAGTQNSTLEDFARMKALMH--KDAHII-------E-----DT-- 376 (917)
T ss_pred cCCEEEEECCCc-----hHHHHHHHHHHC-CCEEEEEcCCCCCHHHHHHHHHhcC--CCCEEE-------E-----CC--
Confidence 346888876553 356788888888 8999876655332110111111111 001110 0 00
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 86 VTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
...++.+++++. +||++|.... ...+|+++|||++...
T Consensus 377 ----------d~~el~~~i~~~--~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 377 ----------STAGLLRVMREK--MPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred ----------CHHHHHHHHHhc--CCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 112455677778 9999998642 3568999999999655
No 292
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=48.97 E-value=2.1e+02 Score=26.04 Aligned_cols=153 Identities=9% Similarity=-0.039 Sum_probs=78.2
Q ss_pred cccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHH
Q 043859 259 LFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFL 338 (484)
Q Consensus 259 ~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ 338 (484)
++-|++.. .+.++.|..|..+ ..=+..|...+..+.++-.. +-+++.
T Consensus 17 ~pi~l~~~-~~~VLVVGGG~VA-------~RK~~~Ll~~gA~VtVVap~-------------------------i~~el~ 63 (223)
T PRK05562 17 MFISLLSN-KIKVLIIGGGKAA-------FIKGKTFLKKGCYVYILSKK-------------------------FSKEFL 63 (223)
T ss_pred eeeEEECC-CCEEEEECCCHHH-------HHHHHHHHhCCCEEEEEcCC-------------------------CCHHHH
Confidence 33455543 4568888777432 22234455567776665411 112333
Q ss_pred HhhcCCceEecCCcchhhhccCCCccccccccCchhHHHHHhc-----CCceeecccccccchhHHHH----HhhhcceE
Q 043859 339 SRTLDIGVVVPQWAPQIDILSHPSVGGFLSHCGWNSTLESITN-----GVPMIVWPLYSEQRMNATIL----TEELGVAI 409 (484)
Q Consensus 339 ~~~~~~~v~v~~~ipq~~vL~~~~~~~~ItHgG~gs~~eal~~-----GvP~v~~P~~~DQ~~na~rv----~~~~G~g~ 409 (484)
+......+.+..---+..-|..+. ++|..-+-..+++.++. |+++.+ .|++..+..+ .++-++-+
T Consensus 64 ~l~~~~~i~~~~r~~~~~dl~g~~--LViaATdD~~vN~~I~~~a~~~~~lvn~----vd~p~~~dFi~PAiv~rg~l~I 137 (223)
T PRK05562 64 DLKKYGNLKLIKGNYDKEFIKDKH--LIVIATDDEKLNNKIRKHCDRLYKLYID----CSDYKKGLCIIPYQRSTKNFVF 137 (223)
T ss_pred HHHhCCCEEEEeCCCChHHhCCCc--EEEECCCCHHHHHHHHHHHHHcCCeEEE----cCCcccCeEEeeeEEecCCEEE
Confidence 323333333322111233456666 78888888777776654 445443 3444333221 12323334
Q ss_pred EeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 043859 410 RSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQ 453 (484)
Q Consensus 410 ~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~ 453 (484)
.+.+... .-.-+..|++.|++++.+ ...+.+.+.++++.++
T Consensus 138 aIST~G~-sP~lar~lR~~ie~~l~~--~~~l~~~l~~~R~~vk 178 (223)
T PRK05562 138 ALNTKGG-SPKTSVFIGEKVKNFLKK--YDDFIEYVTKIRNKAK 178 (223)
T ss_pred EEECCCc-CcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 4432111 122336799999999933 3347777777777755
No 293
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=48.81 E-value=1.3e+02 Score=23.78 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=53.4
Q ss_pred EEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHH
Q 043859 11 VLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIIS 90 (484)
Q Consensus 11 l~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 90 (484)
+|++.... +-.-++.+|+.|.+. |++|. +++...+. +...+ +.+..+.... +. ....
T Consensus 3 vlisv~~~-dk~~~~~~a~~l~~~-G~~i~--aT~gTa~~-----L~~~g----i~~~~v~~~~--~~-~~~~------- 59 (116)
T cd01423 3 ILISIGSY-SKPELLPTAQKLSKL-GYKLY--ATEGTADF-----LLENG----IPVTPVAWPS--EE-PQND------- 59 (116)
T ss_pred EEEecCcc-cchhHHHHHHHHHHC-CCEEE--EccHHHHH-----HHHcC----CCceEeeecc--CC-CCCC-------
Confidence 34444444 556788999999998 89883 44444333 33333 3222221100 00 0000
Q ss_pred HHHHHhhHHHHHHHHhcCCCCeEEEeCCc---------hhhHHHHHHHhCCCeEE
Q 043859 91 VIMREIKPAFRSAISALKTTPTALIVDLF---------GTESLAIAEELQIPKYV 136 (484)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~pD~VI~D~~---------~~~~~~~A~~lgIP~v~ 136 (484)
.+.+.+++++- ++|+||.-+. .+.--..|-.+|||+++
T Consensus 60 ------~~~i~~~i~~~--~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 ------KPSLRELLAEG--KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred ------chhHHHHHHcC--CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 14566667665 9999998432 12233589999999863
No 294
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=48.24 E-value=1.7e+02 Score=25.79 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=46.3
Q ss_pred Ce-EEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc--hhHHHHHhhhccCCCceEEEecCCC
Q 043859 8 PH-AVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT--SAAESKILQSAMSSKLCHVIEIPAP 73 (484)
Q Consensus 8 ~~-il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~ 73 (484)
.+ |+|+..++.-|-.-...+++.|++. |..|.+++-..-. ...-+.+++......+-++..+|..
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~-~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~ 175 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKN-NVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPPG 175 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHc-CCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 35 7788888888887788999999998 8888888755332 2233456666654456788888863
No 295
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=48.11 E-value=1.2e+02 Score=30.82 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=37.2
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHH-hcCCCeEEEEecCCCchhHH
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLV-TLYNFQVTIFVVASQTSAAE 52 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~-~r~Gh~Vt~~~~~~~~~~~~ 52 (484)
+.-++|+..++.|-..-...||..|. ++ |..|.+++.+.++....
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~D~~R~~a~ 144 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVACDLYRPAAI 144 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEeccccchHHH
Confidence 34566777789999999999999997 57 89999999998876543
No 296
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=48.10 E-value=2e+02 Score=25.63 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=32.5
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCC
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQ 47 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~ 47 (484)
-+.+.-.|+.|-..=.+.+|..+... |..|.|+.++..
T Consensus 21 i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi~~e~~ 58 (218)
T cd01394 21 VTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYIDTEGL 58 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCCC
Confidence 35566678999999999999999988 899999988754
No 297
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=47.96 E-value=24 Score=31.01 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=33.7
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAES 53 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~ 53 (484)
+||++...++.|=+. ...+.+.|+++ |++|.++.++.-...+..
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~-g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKR-GYQVTVLMTKAATKFITP 45 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHC-CCEEEEEEChhHHHHcCH
Confidence 467777666666555 89999999999 999999999875544433
No 298
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=47.47 E-value=97 Score=28.75 Aligned_cols=95 Identities=18% Similarity=0.248 Sum_probs=53.0
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
|||+++..-+.| ..||+.|.++ |+ |.+-+...+... ...... ...... ...+.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~-g~-v~~sv~t~~g~~----~~~~~~--~~~~v~---~G~lg----------- 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEA-GY-VIVSVATSYGGE----LLKPEL--PGLEVR---VGRLG----------- 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhc-CC-EEEEEEhhhhHh----hhcccc--CCceEE---ECCCC-----------
Confidence 677777665555 4799999999 88 554444433211 111110 011111 01110
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEE--eCCchh----hHHHHHHHhCCCeEEEec
Q 043859 88 IISVIMREIKPAFRSAISALKTTPTALI--VDLFGT----ESLAIAEELQIPKYVYVG 139 (484)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~VI--~D~~~~----~~~~~A~~lgIP~v~~~~ 139 (484)
....+.+++++- ++++|| +.+|.. -+..+|+.+|||++.+..
T Consensus 54 --------~~~~l~~~l~~~--~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 54 --------DEEGLAEFLREN--GIDAVIDATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred --------CHHHHHHHHHhC--CCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 123555666777 999998 333322 233589999999999864
No 299
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=47.41 E-value=26 Score=30.83 Aligned_cols=39 Identities=15% Similarity=0.023 Sum_probs=32.7
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCC
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQ 47 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~ 47 (484)
+||++.-.++.|=+.-.+.+.++|++. |++|+++.++.-
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~-g~~V~vI~S~~A 39 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDE-GAEVTPIVSETV 39 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhC-cCEEEEEEchhH
Confidence 367777777777777778999999999 999999998864
No 300
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.22 E-value=33 Score=32.12 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=37.2
Q ss_pred CCCccccccccCchhHHHHHh------cCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHh
Q 043859 360 HPSVGGFLSHCGWNSTLESIT------NGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRIL 433 (484)
Q Consensus 360 ~~~~~~~ItHgG~gs~~eal~------~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl 433 (484)
.++ ++|+-||-||++.++. .++|++.+-. - .+|-. -..+++++.+.+.+++
T Consensus 35 ~~D--lvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~--------G------~lGFL-------~~~~~~~~~~~l~~i~ 91 (265)
T PRK04885 35 NPD--IVISVGGDGTLLSAFHRYENQLDKVRFVGVHT--------G------HLGFY-------TDWRPFEVDKLVIALA 91 (265)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcccCCCCeEEEEeC--------C------Cceec-------ccCCHHHHHHHHHHHH
Confidence 345 8999999999999976 4788888742 0 12211 2346677888888887
Q ss_pred ccc
Q 043859 434 VDE 436 (484)
Q Consensus 434 ~~~ 436 (484)
++.
T Consensus 92 ~g~ 94 (265)
T PRK04885 92 KDP 94 (265)
T ss_pred cCC
Confidence 653
No 301
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=46.93 E-value=23 Score=29.60 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=74.2
Q ss_pred cccccCchhHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcc---------c
Q 043859 366 FLSHCGWNSTLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVD---------E 436 (484)
Q Consensus 366 ~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~---------~ 436 (484)
+-.=|+==||.|-+-.--|+|+=.-..-+++|..++ ..|+-.-.. +..++.++|..++..|-.. +
T Consensus 31 C~~C~~RFTTfE~~El~~~~VvKkdg~Re~F~r~Kl--~~gl~~A~~----KRpVs~e~ie~~v~~ie~~Lr~~g~~EV~ 104 (156)
T COG1327 31 CLECGERFTTFERAELRPLIVVKKDGRREPFDREKL--RRGLIRACE----KRPVSSEQIEEAVSHIERQLRSSGEREVP 104 (156)
T ss_pred ccccccccchhheeeeccceEECcCCCcCCCCHHHH--HHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 334445558889888888888888888899999888 346655543 3788999988888877421 1
Q ss_pred c---hHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhhhhhcCCC
Q 043859 437 E---GYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGMMTKRNAN 483 (484)
Q Consensus 437 ~---~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 483 (484)
+ |+..-+..+++-+.+=--+ +.-+.+++.+++|++.|.++..+..+
T Consensus 105 S~~IG~~VM~~Lk~lD~VAYvRF-ASVYr~F~dv~~F~e~i~~l~~~~~~ 153 (156)
T COG1327 105 SKEIGELVMEELKKLDEVAYVRF-ASVYRSFKDVDDFEEEIEELTKEGEK 153 (156)
T ss_pred HHHHHHHHHHHHHhcchhhhhhh-hhHhcccCCHHHHHHHHHHHHhcccc
Confidence 1 3333444444444433223 45566777899999999999765443
No 302
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=46.57 E-value=2.3e+02 Score=27.14 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=24.1
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
|||+|+..+. -.+...+.|.++ ||+|..+.+.+
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~-~~~i~~Vvt~~ 33 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLES-GHEVVAVVTQP 33 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHC-CCcEEEEECCC
Confidence 7888885443 446778888888 89988777643
No 303
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=46.53 E-value=1.9e+02 Score=24.77 Aligned_cols=112 Identities=19% Similarity=0.210 Sum_probs=57.1
Q ss_pred CCccChHHH-HHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCC-CCCchHHHH-H-HH
Q 043859 16 PGVGHVIPV-LELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLV-DPDAAVVTI-I-SV 91 (484)
Q Consensus 16 p~~GHv~P~-l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~-~-~~ 91 (484)
...+.+..+ ..+|.+|+++ |++|.=+........ ......+....++....-... +.+...... + ..
T Consensus 7 ~~~~~~d~lL~~~a~~L~~~-G~rv~G~vQ~~~~~~--------~~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~ 77 (159)
T PF10649_consen 7 DDGGDIDALLAAFAARLRAR-GVRVAGLVQRNTADG--------DGGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPG 77 (159)
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCeEEEEeccccCCC--------CCCccceEEEECCCCCEEEEeeccCCCCcccccCHH
Confidence 344555554 4699999999 999987776642211 111123555555432211110 001000000 0 12
Q ss_pred HHHHhhHHHHHHHHhcCCCCeEEEeCCch---------hhHHHHHHHhCCCeEEEec
Q 043859 92 IMREIKPAFRSAISALKTTPTALIVDLFG---------TESLAIAEELQIPKYVYVG 139 (484)
Q Consensus 92 ~~~~~~~~l~~~l~~~~~~pD~VI~D~~~---------~~~~~~A~~lgIP~v~~~~ 139 (484)
-+......++..+++ ++|++|..-|. ......|-..|||+++..+
T Consensus 78 ~La~A~~~l~~al~~---~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~ 131 (159)
T PF10649_consen 78 ALAEASAALRRALAE---GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVP 131 (159)
T ss_pred HHHHHHHHHHHHHhc---CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEEC
Confidence 233344445554444 89999987542 1223356678999887654
No 304
>COG1422 Predicted membrane protein [Function unknown]
Probab=46.38 E-value=51 Score=29.08 Aligned_cols=87 Identities=23% Similarity=0.280 Sum_probs=51.7
Q ss_pred hHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHH
Q 043859 374 STLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVD-EEGYEIRAKVKELQRSA 452 (484)
Q Consensus 374 s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~-~~~~~~~~~a~~l~~~~ 452 (484)
++.++++-+.=.+..|+..=++.--..++ .| .--.-+..-+++.+.| ++-+++++.+++++++.
T Consensus 24 ~~~~~i~~~ln~~f~P~i~~~~p~lvilV--~a-------------vi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~ 88 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLSPLPPHLVILV--AA-------------VITGLYITILQKLLIDQEKMKELQKMMKEFQKEF 88 (201)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHH--HH-------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 55666666666666665443333222221 11 1122345556677777 55677999999999999
Q ss_pred HHhhhcCCCChHHHHHHHHHHHhhhh
Q 043859 453 QKAWTRESGSSYSSLARLAKECGMMT 478 (484)
Q Consensus 453 ~~a~~~~~g~~~~~~~~~~~~~~~~~ 478 (484)
++|. .++ ....++++-+...++-
T Consensus 89 ~eA~-~~~--d~~~lkkLq~~qmem~ 111 (201)
T COG1422 89 REAQ-ESG--DMKKLKKLQEKQMEMM 111 (201)
T ss_pred HHHH-HhC--CHHHHHHHHHHHHHHH
Confidence 9888 554 3346666666555543
No 305
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=46.17 E-value=69 Score=33.31 Aligned_cols=99 Identities=8% Similarity=0.120 Sum_probs=60.2
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCC---CCCCCCCCCc
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAP---DISGLVDPDA 83 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~ 83 (484)
.--+++...|+.|-..=+++++....++ |..|.|++.+...+.+.+.. ..++ +++..+-.. .+....+...
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~-g~~~~yis~e~~~~~i~~~~-~~~g----~~~~~~~~~g~l~i~~~~~~~~ 346 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRR-GERCLLFAFEESRAQLIRNA-RSWG----IDLEKMEEKGLLKIICARPESY 346 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCHHHHHHHH-HHcC----CChHHHhhcCCceeecCCcccC
Confidence 4456677778999999999999998888 99999999997766544432 3333 222111100 0000001111
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchh
Q 043859 84 AVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGT 121 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~ 121 (484)
. .......+...+++. ++++||.|.+..
T Consensus 347 ~--------~~~~~~~i~~~i~~~--~~~~vVIDslt~ 374 (509)
T PRK09302 347 G--------LEDHLIIIKREIEEF--KPSRVAIDPLSA 374 (509)
T ss_pred C--------HHHHHHHHHHHHHHc--CCCEEEEcCHHH
Confidence 1 122334556666777 999999998654
No 306
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=45.94 E-value=1.8e+02 Score=24.37 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=32.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 10 AVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 10 il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
|.+.-.++.|--..+..++..|.++ |++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~-g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRAR-GKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeCC
Confidence 6777788999999999999999999 99999988774
No 307
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=45.84 E-value=2e+02 Score=25.98 Aligned_cols=92 Identities=14% Similarity=0.065 Sum_probs=56.7
Q ss_pred CCccChHHHHH---HHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHH
Q 043859 16 PGVGHVIPVLE---LGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVI 92 (484)
Q Consensus 16 p~~GHv~P~l~---La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 92 (484)
+=.||+.+++. +++.|+.+ |++|.|++.-.....-.....+..+ .. ...+
T Consensus 34 ~HiGH~r~~v~~Dvl~R~lr~~-G~~V~~~~g~dd~g~ki~~~A~~~g----------------------~~----p~e~ 86 (213)
T cd00672 34 AHIGHARTYVVFDVLRRYLEDL-GYKVRYVQNITDIDDKIIKRAREEG----------------------LS----WKEV 86 (213)
T ss_pred cccccchhHHHHHHHHHHHHhc-CCeeEEEeecCCCCCHHHHHHHHcC----------------------CC----HHHH
Confidence 34699988764 67888888 9999999876433211111111111 00 2345
Q ss_pred HHHhhHHHHHHHHhcCC-CCeEEEeCCchhhHHHHHHHhCCCe
Q 043859 93 MREIKPAFRSAISALKT-TPTALIVDLFGTESLAIAEELQIPK 134 (484)
Q Consensus 93 ~~~~~~~l~~~l~~~~~-~pD~VI~D~~~~~~~~~A~~lgIP~ 134 (484)
.+.....+++.++.++- .||..+--.+.-|++.+.+.+|-|+
T Consensus 87 ~~~~~~~f~~~~~~l~i~~~d~~~rtWh~ec~am~~~~lg~~~ 129 (213)
T cd00672 87 ADYYTKEFFEDMKALNVLPPDVVPRVWHIECSAMAMKYLGETF 129 (213)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcceeehhHHHHHHHHHHcCCCc
Confidence 55566677788888843 3366665566777777778888664
No 308
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=45.70 E-value=1.7e+02 Score=29.79 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEE
Q 043859 99 AFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVY 137 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~ 137 (484)
.+.+.+++. +||++|.... +..+|+++|||++.+
T Consensus 378 e~~~~i~~~--~pdllig~s~---~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 378 EFEEILEKL--KPDIIFSGIK---EKFVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHHHhc--CCCEEEEcCc---chhhhhhcCCCeEec
Confidence 344566777 9999998752 467899999999875
No 309
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=45.57 E-value=1.3e+02 Score=25.13 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=21.8
Q ss_pred ccccccccCc------hhHHHHHhcCCceeeccc
Q 043859 363 VGGFLSHCGW------NSTLESITNGVPMIVWPL 390 (484)
Q Consensus 363 ~~~~ItHgG~------gs~~eal~~GvP~v~~P~ 390 (484)
.+++++|+|- +.+.+|...++|+|++.-
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3378888664 477889999999999963
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=45.47 E-value=2.5e+02 Score=26.78 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=34.7
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
...|+|+-.++.|-..-+..|+..|.++ |+.|.++..++..
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~-~~~v~~i~~D~~~ 74 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRR-GLKVAVIAVDPSS 74 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 4466666668999999999999999999 9999999877654
No 311
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=45.19 E-value=32 Score=29.95 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=40.8
Q ss_pred CCCccccccccCchhHHHHHhcCCceeeccccc-----------------------ccchhHHHHHhhhcceEEeeecCC
Q 043859 360 HPSVGGFLSHCGWNSTLESITNGVPMIVWPLYS-----------------------EQRMNATILTEELGVAIRSKVLPS 416 (484)
Q Consensus 360 ~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~-----------------------DQ~~na~rv~~~~G~g~~l~~~~~ 416 (484)
+..+.++|++||...+..... ++|+|-+|..+ ....+...+.+-+|+-+...
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~---- 106 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIY---- 106 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEE----
T ss_pred hcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEE----
Confidence 344448999999999999888 99999999742 22333445433455554443
Q ss_pred CCccCHHHHHHHHHHHhcc
Q 043859 417 KGVVGREEIKTMVRRILVD 435 (484)
Q Consensus 417 ~~~~~~~~l~~~i~~vl~~ 435 (484)
.--+.+++...|.++..+
T Consensus 107 -~~~~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 107 -PYDSEEEIEAAIKQAKAE 124 (176)
T ss_dssp -EESSHHHHHHHHHHHHHT
T ss_pred -EECCHHHHHHHHHHHHHc
Confidence 234567777777777543
No 312
>PRK05920 aromatic acid decarboxylase; Validated
Probab=44.98 E-value=36 Score=30.50 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=32.6
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchh
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSA 50 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 50 (484)
.+||++.-.++.+ ..=...+.+.|++. ||+|+++.++.-...
T Consensus 3 ~krIllgITGsia-a~ka~~lvr~L~~~-g~~V~vi~T~~A~~f 44 (204)
T PRK05920 3 MKRIVLAITGASG-AIYGVRLLECLLAA-DYEVHLVISKAAQKV 44 (204)
T ss_pred CCEEEEEEeCHHH-HHHHHHHHHHHHHC-CCEEEEEEChhHHHH
Confidence 4677776555544 47899999999999 999999999974433
No 313
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=44.87 E-value=2.2e+02 Score=25.14 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=33.2
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
.-+.+.-.|+.|-..=++.++..+.+. |..|.|+.++.
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC
Confidence 345666678999999999999999988 89999999986
No 314
>PHA02698 hypothetical protein; Provisional
Probab=44.15 E-value=70 Score=23.04 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=31.3
Q ss_pred CccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhhh
Q 043859 418 GVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGMM 477 (484)
Q Consensus 418 ~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~~ 477 (484)
...++++..+.+.+.|+|-. |+....-+..+ .+++|+.+++.+
T Consensus 39 ~~CsPEdMs~mLD~FLediq---~ksElqLLsqE--------------EMdELl~Eledl 81 (89)
T PHA02698 39 PQCSPEDMSDMLDNFLEDIQ---YKSELQLLSQE--------------EMDELLVELEDL 81 (89)
T ss_pred ccCCHHHHHHHHHHHHHHHH---HHHHHHHhhHH--------------HHHHHHHHHHHH
Confidence 45788999999999999865 87766666554 456666665554
No 315
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=44.15 E-value=48 Score=33.03 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=32.5
Q ss_pred HHHHHhhHHHHHHHHhcCCCCeEEEeCCchhh-------HH---HHHHHhCCCeEEE
Q 043859 91 VIMREIKPAFRSAISALKTTPTALIVDLFGTE-------SL---AIAEELQIPKYVY 137 (484)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~-------~~---~~A~~lgIP~v~~ 137 (484)
....++...+.++++++ +||++|+.+.+.+ +. .+.++++||.++-
T Consensus 59 en~eea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 59 ENLEEAVARVLEMLKDK--EPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred hCHHHHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 34555667888889999 9999999875432 21 2456799998873
No 316
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=43.88 E-value=48 Score=33.01 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=32.7
Q ss_pred HHHHHhhHHHHHHHHhcCCCCeEEEeCCchhh-------HH---HHHHHhCCCeEEE
Q 043859 91 VIMREIKPAFRSAISALKTTPTALIVDLFGTE-------SL---AIAEELQIPKYVY 137 (484)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~-------~~---~~A~~lgIP~v~~ 137 (484)
....++...+.++++++ +||++|+.+.+.+ +. .+.++++||.++-
T Consensus 59 en~eea~~~i~~mv~k~--~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 59 ENLEEAKAKVLEMIKGA--NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred hCHHHHHHHHHHHHHhc--CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 44556667888889999 9999999875432 21 2456799998873
No 317
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=43.84 E-value=2.5e+02 Score=26.71 Aligned_cols=108 Identities=10% Similarity=0.059 Sum_probs=59.8
Q ss_pred CCCCCeEEEEcCCCccChHHHHHHHHHHHhcC-CCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCC
Q 043859 4 SSSKPHAVLLASPGVGHVIPVLELGKRLVTLY-NFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPD 82 (484)
Q Consensus 4 ~~~~~~il~~~~p~~GHv~P~l~La~~L~~r~-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 82 (484)
..++|||+++..+.-+. +.+|.+...+.. +++|..+.+.... + ..+.+..+ +.+..++.... .
T Consensus 86 ~~~~~ri~vl~Sg~gsn---l~al~~~~~~~~~~~~i~~visn~~~--~-~~lA~~~g----Ip~~~~~~~~~-~----- 149 (286)
T PRK06027 86 SAERKRVVILVSKEDHC---LGDLLWRWRSGELPVEIAAVISNHDD--L-RSLVERFG----IPFHHVPVTKE-T----- 149 (286)
T ss_pred cccCcEEEEEEcCCCCC---HHHHHHHHHcCCCCcEEEEEEEcChh--H-HHHHHHhC----CCEEEeccCcc-c-----
Confidence 35689999988887444 445555554421 5888888876532 1 23355555 55555443110 0
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCc-hhhHHHHHHHhCCCeEEEec
Q 043859 83 AAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLF-GTESLAIAEELQIPKYVYVG 139 (484)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~-~~~~~~~A~~lgIP~v~~~~ 139 (484)
.......+.+.++++ +||+||.-.+ ..-...+-+.+.-.++-+++
T Consensus 150 ----------~~~~~~~~~~~l~~~--~~Dlivlagy~~il~~~~l~~~~~~iiNiHp 195 (286)
T PRK06027 150 ----------KAEAEARLLELIDEY--QPDLVVLARYMQILSPDFVARFPGRIINIHH 195 (286)
T ss_pred ----------cchhHHHHHHHHHHh--CCCEEEEecchhhcCHHHHhhccCCceecCc
Confidence 001123456777888 9999997643 33333444444444555544
No 318
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=43.74 E-value=42 Score=31.94 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=37.8
Q ss_pred cCCCccccccccCchhHHHHHhc----CCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhc
Q 043859 359 SHPSVGGFLSHCGWNSTLESITN----GVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILV 434 (484)
Q Consensus 359 ~~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~ 434 (484)
..++ ++|+-||-||+++++.. ++|++.+-. -. +|-. -..+.+++.+.|.++++
T Consensus 62 ~~~d--~vi~~GGDGt~l~~~~~~~~~~~pilGIn~------------G~--lGFL-------~~~~~~~~~~~l~~~~~ 118 (291)
T PRK02155 62 ARAD--LAVVLGGDGTMLGIGRQLAPYGVPLIGINH------------GR--LGFI-------TDIPLDDMQETLPPMLA 118 (291)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEcC------------CC--cccc-------ccCCHHHHHHHHHHHHc
Confidence 3566 89999999999999774 667776631 11 2211 24567888888888876
Q ss_pred cc
Q 043859 435 DE 436 (484)
Q Consensus 435 ~~ 436 (484)
++
T Consensus 119 g~ 120 (291)
T PRK02155 119 GN 120 (291)
T ss_pred CC
Confidence 54
No 319
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=42.88 E-value=63 Score=26.50 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=40.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhh
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQS 58 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (484)
+|++.+..+.+|-.----++..|... |++|+........+.+.+.-.+.
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~-GfeVidLG~~v~~e~~v~aa~~~ 49 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEA-GFNVVNLGVLSPQEEFIDAAIET 49 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHC-CCEEEECCCCCCHHHHHHHHHHc
Confidence 58899999999999999999999998 99999999887665554444343
No 320
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=42.55 E-value=2.1e+02 Score=24.20 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=65.1
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecCC
Q 043859 272 LYVSFGSGGTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQW 351 (484)
Q Consensus 272 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~~ 351 (484)
|-|-+||. .+....+++...|+..+..+-..+.. ....|+.+. +|
T Consensus 3 V~Ii~gs~--SD~~~~~~a~~~L~~~gi~~~~~V~s----------------------aHR~p~~l~-----------~~ 47 (150)
T PF00731_consen 3 VAIIMGST--SDLPIAEEAAKTLEEFGIPYEVRVAS----------------------AHRTPERLL-----------EF 47 (150)
T ss_dssp EEEEESSG--GGHHHHHHHHHHHHHTT-EEEEEE------------------------TTTSHHHHH-----------HH
T ss_pred EEEEeCCH--HHHHHHHHHHHHHHHcCCCEEEEEEe----------------------ccCCHHHHH-----------HH
Confidence 44455653 35677888999998888666544421 133444332 22
Q ss_pred cchhhhccCCCccccccccCch----hHHHHHhcCCceeecccccccchh----HHHHHhhhcceEEeeecCCCCccCHH
Q 043859 352 APQIDILSHPSVGGFLSHCGWN----STLESITNGVPMIVWPLYSEQRMN----ATILTEELGVAIRSKVLPSKGVVGRE 423 (484)
Q Consensus 352 ipq~~vL~~~~~~~~ItHgG~g----s~~eal~~GvP~v~~P~~~DQ~~n----a~rv~~~~G~g~~l~~~~~~~~~~~~ 423 (484)
+...+- ..++ +||+=.|.. ++.-++. -+|+|.+|....+... ...+.---|+.+-.- ..+...++.
T Consensus 48 ~~~~~~-~~~~--viIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv--~i~~~~nAA 121 (150)
T PF00731_consen 48 VKEYEA-RGAD--VIIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATV--GINNGFNAA 121 (150)
T ss_dssp HHHTTT-TTES--EEEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE---SSTHHHHHH
T ss_pred HHHhcc-CCCE--EEEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEE--EccCchHHH
Confidence 222111 1233 577776654 4444444 7999999987764422 222211125553321 111122333
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 043859 424 EIKTMVRRILVDEEGYEIRAKVKELQRSAQ 453 (484)
Q Consensus 424 ~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~ 453 (484)
.+.-.|.. +.|++ ++++.+..++..+
T Consensus 122 ~~A~~ILa-~~d~~---l~~kl~~~~~~~~ 147 (150)
T PF00731_consen 122 LLAARILA-LKDPE---LREKLRAYREKMK 147 (150)
T ss_dssp HHHHHHHH-TT-HH---HHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCHH---HHHHHHHHHHHHH
Confidence 33333322 23444 7877777777754
No 321
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=42.33 E-value=2.3e+02 Score=26.44 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=62.8
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHh------hhccCCCceEEEecCCCCCCCCC
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKIL------QSAMSSKLCHVIEIPAPDISGLV 79 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~p~~~~~~~~ 79 (484)
+..+|.|.-.|+-|--.=.=.|++.|+++ |++|-+++..+..++---+++ +.....+++-+.+++...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~-g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG----- 101 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRER-GKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRG----- 101 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHT-T--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---S-----
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhc-CCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCC-----
Confidence 45688899999999999999999999999 999999998876533111111 111111133333333211
Q ss_pred CCCchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHH---HHHHHhCCCeEEE
Q 043859 80 DPDAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESL---AIAEELQIPKYVY 137 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~---~~A~~lgIP~v~~ 137 (484)
. + .-+.......-.+++.. .+|+||.+-.-. +. .+++...+=++++
T Consensus 102 ----~----l-GGls~~t~~~v~ll~aa--G~D~IiiETVGv-GQsE~~I~~~aD~~v~v~ 150 (266)
T PF03308_consen 102 ----S----L-GGLSRATRDAVRLLDAA--GFDVIIIETVGV-GQSEVDIADMADTVVLVL 150 (266)
T ss_dssp ----S----H-HHHHHHHHHHHHHHHHT--T-SEEEEEEESS-STHHHHHHTTSSEEEEEE
T ss_pred ----C----C-CCccHhHHHHHHHHHHc--CCCEEEEeCCCC-CccHHHHHHhcCeEEEEe
Confidence 0 1 22233344566788888 999999994332 32 3555444444444
No 322
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=42.31 E-value=1.2e+02 Score=25.56 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=41.9
Q ss_pred CCCeEEEEcCCC-------ccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEE
Q 043859 6 SKPHAVLLASPG-------VGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVI 68 (484)
Q Consensus 6 ~~~~il~~~~p~-------~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (484)
+.++|+++..|+ ..|+--++.++.+++++ |.+=.++.+-+ -.++-.++....+...++.|+
T Consensus 36 ~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~k-GVD~I~cVSVN-D~FVm~AWak~~g~~~~I~fi 103 (165)
T COG0678 36 KGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAK-GVDEIYCVSVN-DAFVMNAWAKSQGGEGNIKFI 103 (165)
T ss_pred CCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHc-CCceEEEEEeC-cHHHHHHHHHhcCCCccEEEe
Confidence 457888888874 57999999999999999 87554444432 144455566666644456665
No 323
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=42.20 E-value=1.3e+02 Score=25.70 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=27.8
Q ss_pred cchhhhccCCCccccccccCchhHHH---HHhcCCceeeccc
Q 043859 352 APQIDILSHPSVGGFLSHCGWNSTLE---SITNGVPMIVWPL 390 (484)
Q Consensus 352 ipq~~vL~~~~~~~~ItHgG~gs~~e---al~~GvP~v~~P~ 390 (484)
.+-..++...+...++--||.||..| ++.+++|+++++.
T Consensus 82 ~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred chHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 34555555444447777899997654 6889999999985
No 324
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=42.10 E-value=72 Score=27.35 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=22.6
Q ss_pred CccccccccCch------hHHHHHhcCCceeecc
Q 043859 362 SVGGFLSHCGWN------STLESITNGVPMIVWP 389 (484)
Q Consensus 362 ~~~~~ItHgG~g------s~~eal~~GvP~v~~P 389 (484)
..+++++|+|-| .+.||...++|||++.
T Consensus 60 ~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 60 RPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 344788888855 6779999999999995
No 325
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=41.29 E-value=30 Score=31.60 Aligned_cols=37 Identities=5% Similarity=0.066 Sum_probs=25.4
Q ss_pred CeEEEEcCCCccChHH------------HHHHHHHHHhcCCCeEEEEecC
Q 043859 8 PHAVLLASPGVGHVIP------------VLELGKRLVTLYNFQVTIFVVA 45 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P------------~l~La~~L~~r~Gh~Vt~~~~~ 45 (484)
|||++...|+.=.+.| =.+||++|.++ ||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~-G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAA-GHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhC-CCEEEEEECc
Confidence 4555555555444433 25788999999 9999998744
No 326
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=41.12 E-value=59 Score=30.19 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCeEEEeCCchhhH----HHHHHHhCCCeEEEe
Q 043859 98 PAFRSAISALKTTPTALIVDLFGTES----LAIAEELQIPKYVYV 138 (484)
Q Consensus 98 ~~l~~~l~~~~~~pD~VI~D~~~~~~----~~~A~~lgIP~v~~~ 138 (484)
+.-+.+++++ +.|+||+-..--.+ ..+|..+|||++.+-
T Consensus 184 e~n~al~~~~--~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 184 ELNRALFRQY--GIDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred HHHHHHHHHc--CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 4567889999 99999976432222 259999999999875
No 327
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.07 E-value=45 Score=31.69 Aligned_cols=57 Identities=7% Similarity=0.028 Sum_probs=38.1
Q ss_pred hccCCCccccccccCchhHHHHHh----cCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHH
Q 043859 357 ILSHPSVGGFLSHCGWNSTLESIT----NGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRI 432 (484)
Q Consensus 357 vL~~~~~~~~ItHgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~v 432 (484)
+...++ ++|+-||-||++.+.. .++|++.+-. - . +|-. -..+.+++.+++.++
T Consensus 61 ~~~~~D--lvi~iGGDGT~L~aa~~~~~~~~PilGIN~--------G----~--lGFL-------t~~~~~~~~~~l~~i 117 (287)
T PRK14077 61 LFKISD--FLISLGGDGTLISLCRKAAEYDKFVLGIHA--------G----H--LGFL-------TDITVDEAEKFFQAF 117 (287)
T ss_pred cccCCC--EEEEECCCHHHHHHHHHhcCCCCcEEEEeC--------C----C--cccC-------CcCCHHHHHHHHHHH
Confidence 334566 8999999999998865 3678777631 1 1 1211 245677888888888
Q ss_pred hccc
Q 043859 433 LVDE 436 (484)
Q Consensus 433 l~~~ 436 (484)
+.++
T Consensus 118 ~~g~ 121 (287)
T PRK14077 118 FQGE 121 (287)
T ss_pred HcCC
Confidence 7653
No 328
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=40.79 E-value=1.2e+02 Score=30.37 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=26.3
Q ss_pred eEEEEcC-CCccChHHHHHHHHHHHhcCCCeEEEE
Q 043859 9 HAVLLAS-PGVGHVIPVLELGKRLVTLYNFQVTIF 42 (484)
Q Consensus 9 ~il~~~~-p~~GHv~P~l~La~~L~~r~Gh~Vt~~ 42 (484)
+|+|... .+.|-..-++.|.++|++| |++|.=+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~r-g~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRR-GLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhc-CCccccc
Confidence 4555444 4889999999999999999 9998643
No 329
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=40.51 E-value=2.1e+02 Score=29.16 Aligned_cols=106 Identities=15% Similarity=0.196 Sum_probs=61.7
Q ss_pred EEEE-cCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHH
Q 043859 10 AVLL-ASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTI 88 (484)
Q Consensus 10 il~~-~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 88 (484)
|++. +-.+.|-..=+..|++.|+++ |++|..+=+.+. ........... .. +...++..
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~-G~~V~~fK~g~d--~~D~~~~~~~~---g~-----~~~~ld~~---------- 60 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRR-KLRVQPFKVGPD--YIDPMFHTQAT---GR-----PSRNLDSF---------- 60 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-CCceeEEccCCC--CCCHHHHHHHh---CC-----chhhCCcc----------
Confidence 4444 334678899999999999999 999998865421 11111111000 00 00000000
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCeEEEeCCc-------h-----hhHHHHHHHhCCCeEEEeccc
Q 043859 89 ISVIMREIKPAFRSAISALKTTPTALIVDLF-------G-----TESLAIAEELQIPKYVYVGTN 141 (484)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~-------~-----~~~~~~A~~lgIP~v~~~~~~ 141 (484)
. ...+.+++.+.++..+.|++|++.. . .....+|+.+++|++.+....
T Consensus 61 -~----~~~~~i~~~~~~~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 61 -F----MSEAQIQECFHRHSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred -c----CCHHHHHHHHHHhcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 0 1234455666655557899997754 1 235689999999999887644
No 330
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=40.41 E-value=1e+02 Score=26.48 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=21.3
Q ss_pred ccccccccCc------hhHHHHHhcCCceeeccc
Q 043859 363 VGGFLSHCGW------NSTLESITNGVPMIVWPL 390 (484)
Q Consensus 363 ~~~~ItHgG~------gs~~eal~~GvP~v~~P~ 390 (484)
.+++++|.|- +++.+|...++|+|++.-
T Consensus 65 ~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 65 PGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 3478888874 477889999999999974
No 331
>PRK06988 putative formyltransferase; Provisional
Probab=40.41 E-value=3.3e+02 Score=26.21 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=24.5
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
|||+|+..+. -.+...+.|.++ ||+|..+.+.+
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~-~~~i~~Vvt~~ 35 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLAR-GVDVALVVTHE 35 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhC-CCCEEEEEcCC
Confidence 7999986554 335566778888 89998887764
No 332
>PLN02939 transferase, transferring glycosyl groups
Probab=39.93 E-value=57 Score=36.37 Aligned_cols=42 Identities=33% Similarity=0.269 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCC-----ccCh-HHHHHHHHHHHhcCCCeEEEEecCCC
Q 043859 5 SSKPHAVLLASPG-----VGHV-IPVLELGKRLVTLYNFQVTIFVVASQ 47 (484)
Q Consensus 5 ~~~~~il~~~~p~-----~GHv-~P~l~La~~L~~r~Gh~Vt~~~~~~~ 47 (484)
.++|||+|++.-. .|-+ .-.-+|.++|++. ||+|.++++.+.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~-GhdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKK-GHLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHc-CCeEEEEeCCCc
Confidence 5679999987521 2222 2345789999999 999999998763
No 333
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=39.83 E-value=38 Score=32.56 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=29.6
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
+.+|||+++-.++.| ..+|..|.+. ||+|+++....
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHC-CCeEEEEEeCC
Confidence 446899999888887 4567889999 99999998764
No 334
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=39.65 E-value=3.8e+02 Score=26.29 Aligned_cols=128 Identities=11% Similarity=0.036 Sum_probs=78.3
Q ss_pred CCCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCc
Q 043859 4 SSSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDA 83 (484)
Q Consensus 4 ~~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 83 (484)
..++.|++++-.+-.||--.|.-=|..|++. |.+|.+++.-..... ..+++ .| +++++.++....-...+.-.
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~-gf~VdliGy~~s~p~--e~l~~-hp---rI~ih~m~~l~~~~~~p~~~ 81 (444)
T KOG2941|consen 9 KSKKKRAIVVVLGDVGRSPRMQYHALSLAKL-GFQVDLIGYVESIPL--EELLN-HP---RIRIHGMPNLPFLQGGPRVL 81 (444)
T ss_pred ccccceEEEEEecccCCChHHHHHHHHHHHc-CCeEEEEEecCCCCh--HHHhc-CC---ceEEEeCCCCcccCCCchhh
Confidence 3567899999999999999999999999999 999999997765432 23444 33 79999999755433322211
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCC-----chhhHHHHHHHhCCCeEEEecccHH
Q 043859 84 AVVTIISVIMREIKPAFRSAISALKTTPTALIVDL-----FGTESLAIAEELQIPKYVYVGTNAW 143 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~-----~~~~~~~~A~~lgIP~v~~~~~~~~ 143 (484)
.. .....-.....+-.++.. .++|.++... ..+.+..+....|...++=|.+..+
T Consensus 82 ~l---~lKvf~Qfl~Ll~aL~~~--~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Y 141 (444)
T KOG2941|consen 82 FL---PLKVFWQFLSLLWALFVL--RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGY 141 (444)
T ss_pred hh---HHHHHHHHHHHHHHHHhc--cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHH
Confidence 11 111111111222333332 3888888662 1222223334457777777766544
No 335
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.60 E-value=1.4e+02 Score=22.57 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhh
Q 043859 423 EEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGM 476 (484)
Q Consensus 423 ~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~ 476 (484)
+++...+++++.|.. .-+|.+|.++.+.+++..++.+-.......+--+++
T Consensus 16 ~q~~~lL~~Ii~Dtt---VPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLee 66 (93)
T COG1698 16 NQVMQLLDEIIQDTT---VPRNIRRAAEEAKEALNNEGESPAVRAATAISILEE 66 (93)
T ss_pred HHHHHHHHHHHcccc---ccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHH
Confidence 344555667778877 888888888888888856666665554444444333
No 336
>PRK09620 hypothetical protein; Provisional
Probab=39.49 E-value=44 Score=30.58 Aligned_cols=39 Identities=5% Similarity=-0.045 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCccChHH------------HHHHHHHHHhcCCCeEEEEecC
Q 043859 6 SKPHAVLLASPGVGHVIP------------VLELGKRLVTLYNFQVTIFVVA 45 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P------------~l~La~~L~~r~Gh~Vt~~~~~ 45 (484)
+.++|++...|+.=.+.| =..||++|.++ |++|+++...
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~-Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISK-GAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 456777776664433332 26789999999 9999999765
No 337
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=39.26 E-value=2.2e+02 Score=30.03 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCCeEEE----eCCchhhHHHHHHHhCCCeEEEeccc
Q 043859 98 PAFRSAISALKTTPTALI----VDLFGTESLAIAEELQIPKYVYVGTN 141 (484)
Q Consensus 98 ~~l~~~l~~~~~~pD~VI----~D~~~~~~~~~A~~lgIP~v~~~~~~ 141 (484)
..++..++.. .+|.+| ||-..++...+|-++|||.|.+...+
T Consensus 101 dsiE~~~~a~--~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGp 146 (615)
T PRK12448 101 DSVEYMVNAH--CADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGP 146 (615)
T ss_pred HHHHHHhhCC--CcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCC
Confidence 3455556666 899888 89888888889999999999887543
No 338
>PLN02929 NADH kinase
Probab=39.16 E-value=45 Score=31.85 Aligned_cols=67 Identities=9% Similarity=0.078 Sum_probs=43.1
Q ss_pred cCCCccccccccCchhHHHHHh---cCCceeeccccc------ccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHH
Q 043859 359 SHPSVGGFLSHCGWNSTLESIT---NGVPMIVWPLYS------EQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMV 429 (484)
Q Consensus 359 ~~~~~~~~ItHgG~gs~~eal~---~GvP~v~~P~~~------DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i 429 (484)
..++ ++|+-||-||++.+.. .++|++.+=... .+..|... +..-+|-. -..+.+++.+.|
T Consensus 63 ~~~D--lvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~--~~r~lGfL-------~~~~~~~~~~~L 131 (301)
T PLN02929 63 RDVD--LVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD--ARRSTGHL-------CAATAEDFEQVL 131 (301)
T ss_pred CCCC--EEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc--cccCcccc-------ccCCHHHHHHHH
Confidence 3445 8999999999999854 468888875431 12223221 11124433 345788999999
Q ss_pred HHHhccc
Q 043859 430 RRILVDE 436 (484)
Q Consensus 430 ~~vl~~~ 436 (484)
.+++++.
T Consensus 132 ~~il~g~ 138 (301)
T PLN02929 132 DDVLFGR 138 (301)
T ss_pred HHHHcCC
Confidence 9999764
No 339
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.01 E-value=47 Score=31.26 Aligned_cols=60 Identities=10% Similarity=-0.003 Sum_probs=39.3
Q ss_pred chhhhccCCCccccccccCchhHHHHHh----cCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHH
Q 043859 353 PQIDILSHPSVGGFLSHCGWNSTLESIT----NGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTM 428 (484)
Q Consensus 353 pq~~vL~~~~~~~~ItHgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~ 428 (484)
++.++...++ ++|+=||-||++.+.. .++|++.+-.. .+|-. -..+++++.+.
T Consensus 35 ~~~~~~~~~d--~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL-------~~~~~~~~~~~ 91 (272)
T PRK02231 35 SLEEIGQRAQ--LAIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFL-------TDIDPKNAYEQ 91 (272)
T ss_pred ChHHhCcCCC--EEEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCccc-------ccCCHHHHHHH
Confidence 3344445567 8999999999998755 36787776321 12222 23566777888
Q ss_pred HHHHhcc
Q 043859 429 VRRILVD 435 (484)
Q Consensus 429 i~~vl~~ 435 (484)
+.+++.+
T Consensus 92 l~~~~~~ 98 (272)
T PRK02231 92 LEACLER 98 (272)
T ss_pred HHHHHhc
Confidence 8888873
No 340
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=38.75 E-value=1.2e+02 Score=27.59 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=51.9
Q ss_pred CCeEEEEcCCCccC----hHHHHHHHHHHHhcCCCeEEEEecCCCc-hhHHHHHhhhccCCCceEEEecCCCCCCCCCCC
Q 043859 7 KPHAVLLASPGVGH----VIPVLELGKRLVTLYNFQVTIFVVASQT-SAAESKILQSAMSSKLCHVIEIPAPDISGLVDP 81 (484)
Q Consensus 7 ~~~il~~~~p~~GH----v~P~l~La~~L~~r~Gh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (484)
+..|+|.+..+..+ ..-+..|++.|.++ |..|.+++.+... ........+... .. +..+.. .
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~-~~~vvl~g~~~~~~~~~~~~~~~~~~--~~--~~~~~~--------~ 171 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKER-GYRVVLLGGPEEQEKEIADQIAAGLQ--NP--VINLAG--------K 171 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCC-T-EEEE--SSHHHHHHHHHHHHTTHT--TT--TEEETT--------T
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhh-CceEEEEccchHHHHHHHHHHHHhcc--cc--eEeecC--------C
Confidence 44566666554322 22368999999999 8888888887542 111112222211 00 111111 0
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecc
Q 043859 82 DAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGT 140 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~ 140 (484)
. ...++-.+++ .-|++|+- ..+...+|..+|+|++.++..
T Consensus 172 -~------------~l~e~~ali~----~a~~~I~~--Dtg~~HlA~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 172 -T------------SLRELAALIS----RADLVIGN--DTGPMHLAAALGTPTVALFGP 211 (247)
T ss_dssp -S-------------HHHHHHHHH----TSSEEEEE--SSHHHHHHHHTT--EEEEESS
T ss_pred -C------------CHHHHHHHHh----cCCEEEec--CChHHHHHHHHhCCEEEEecC
Confidence 0 1123445555 56899965 355678999999999998754
No 341
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=38.66 E-value=2.3e+02 Score=29.23 Aligned_cols=109 Identities=11% Similarity=0.067 Sum_probs=69.9
Q ss_pred eEecCCcchhh---hccCCCcccccc--ccCchhH-HHHHhcCC----ceeecccccccchhHHHHHhhhcceEEeeecC
Q 043859 346 VVVPQWAPQID---ILSHPSVGGFLS--HCGWNST-LESITNGV----PMIVWPLYSEQRMNATILTEELGVAIRSKVLP 415 (484)
Q Consensus 346 v~v~~~ipq~~---vL~~~~~~~~It--HgG~gs~-~eal~~Gv----P~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~ 415 (484)
+.+.+.+|+.+ ++..+++ ++|| .-|+|.+ .|.++++. |+|.==+. -|+ +++.-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa---~~l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA---VELKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch---hhcCCCEEECC--
Confidence 45667787654 6778886 5665 5688855 49999877 44433221 111 34455677653
Q ss_pred CCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhh
Q 043859 416 SKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLAKECGM 476 (484)
Q Consensus 416 ~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~ 476 (484)
.+.++++++|.++|+.+..+ -++|.+++.+.++ . -....=.+.++.++.+
T Consensus 433 ----~d~~~~A~ai~~AL~m~~~E-r~~R~~~l~~~v~----~--~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 ----YDPVRMDETIYVALAMPKAE-QQARMREMFDAVN----Y--YDVQRWADEFLAAVSP 482 (487)
T ss_pred ----CCHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHh----h--CCHHHHHHHHHHHhhh
Confidence 58899999999999986533 5666666666643 1 2355566777766543
No 342
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=38.62 E-value=66 Score=27.50 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=26.4
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEEE
Q 043859 271 VLYVSFGSGGTLTYEQITELAWGLELSQQRFIWVV 305 (484)
Q Consensus 271 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 305 (484)
.+|+|+||........++..+.++...+..-++.+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 69999999877677778888898987664334443
No 343
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=38.17 E-value=2.6e+02 Score=29.12 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 99 AFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
++++++... +||++|.+.. +..+|+++|||++.+.
T Consensus 428 ~l~~~l~~~--~~DlliG~s~---~k~~a~~~giPlir~g 462 (515)
T TIGR01286 428 HLRSLVFTE--PVDFLIGNSY---GKYIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHHHhhc--CCCEEEECch---HHHHHHHcCCCEEEec
Confidence 455677777 9999998842 5678999999998764
No 344
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=38.07 E-value=3e+02 Score=24.69 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=33.7
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
..-+.+...|+.|...=++++|....+. |..|.|+..+.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~e~ 61 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDTEG 61 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 3455677778999999999999999998 99999999993
No 345
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=38.04 E-value=2.5e+02 Score=28.07 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 99 AFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
.+...+++. +||++|.... ....|+++|+|++...
T Consensus 346 ~~~~~~~~~--~pdl~ig~~~---~~~~a~~~gip~~~~~ 380 (406)
T cd01967 346 ELEELVEKL--KPDLILSGIK---EKYVAQKLGIPFLDLH 380 (406)
T ss_pred HHHHHHHhc--CCCEEEeCCc---chHHHHhcCCCEEecC
Confidence 455666777 9999998853 4567899999987643
No 346
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=37.88 E-value=56 Score=33.43 Aligned_cols=122 Identities=14% Similarity=0.186 Sum_probs=54.8
Q ss_pred ccChHHHHHHHHHHHhcC-------CC----eEEEEecCC--CchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCch
Q 043859 18 VGHVIPVLELGKRLVTLY-------NF----QVTIFVVAS--QTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAA 84 (484)
Q Consensus 18 ~GHv~P~l~La~~L~~r~-------Gh----~Vt~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 84 (484)
-|.+-=.+.+|++|.+.. |. +|.++|--- ....-....++......+..+..+|.....+.+++ +-
T Consensus 296 GGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~k-wi 374 (550)
T PF00862_consen 296 GGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRK-WI 374 (550)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S---
T ss_pred CCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhh-cc
Confidence 355666778888886430 33 355555211 10000111223333234567777776443221111 10
Q ss_pred HHHHHHHHHHHhhH-HHHHHHHhcCCCCeEEEeCCch--hhHHHHHHHhCCCeEEEecc
Q 043859 85 VVTIISVIMREIKP-AFRSAISALKTTPTALIVDLFG--TESLAIAEELQIPKYVYVGT 140 (484)
Q Consensus 85 ~~~~~~~~~~~~~~-~l~~~l~~~~~~pD~VI~D~~~--~~~~~~A~~lgIP~v~~~~~ 140 (484)
....++.++..... ....+++.+...||+|+..+.. ..+.++++++|||.+.+..+
T Consensus 375 srf~lWPyLe~fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHs 433 (550)
T PF00862_consen 375 SRFDLWPYLEEFADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHS 433 (550)
T ss_dssp -GGG-GGGHHHHHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred chhhchhhHHHHHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhhcCCceehhhhc
Confidence 01112222222222 2234445556689999977543 34557999999998877654
No 347
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=37.43 E-value=3.7e+02 Score=26.68 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=54.1
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHH
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVV 86 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (484)
.+++++.. +-.-.+.|++.|.+- |.+|..+......+...+..-...... ...+.. . .
T Consensus 271 g~~v~i~~-----~~~~~~~l~~~L~el-G~~v~~v~~~~~~~~~~e~~~~~~~~~-~~~v~~-------~-----~--- 328 (398)
T PF00148_consen 271 GKRVAIYG-----DPDRALGLARFLEEL-GMEVVAVGCDDKSPEDEERLRWLLEES-DPEVII-------D-----P--- 328 (398)
T ss_dssp T-EEEEES-----SHHHHHHHHHHHHHT-T-EEEEEEESSGGHHHHHHHHHHHHTT-CSEEEE-------S-----C---
T ss_pred CceEEEEc-----CchhHHHHHHHHHHc-CCeEEEEEEccCchhHHHHHHHHhhCC-CcEEEe-------C-----C---
Confidence 45777633 336667899999987 999999988865433222211111100 011100 0 0
Q ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 87 TIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
....+++++++. +||+++.+.. ...+|+++++|++.+.
T Consensus 329 ---------~~~~~~~~l~~~--~pdl~ig~~~---~~~~a~~~~~~~~~~~ 366 (398)
T PF00148_consen 329 ---------DPEEIEELLEEL--KPDLLIGSSH---ERYLAKKLGIPLIRIG 366 (398)
T ss_dssp ---------BHHHHHHHHHHH--T-SEEEESHH---HHHHHHHTT--EEE-S
T ss_pred ---------CHHHHHHHHHhc--CCCEEEechh---hHHHHHHhCCCeEEEe
Confidence 113567788888 9999999943 5678899999988754
No 348
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=37.23 E-value=48 Score=29.15 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=32.6
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHh-cCCCeEEEEecCCCchh
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVT-LYNFQVTIFVVASQTSA 50 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~-r~Gh~Vt~~~~~~~~~~ 50 (484)
+||++.-.++.| .+=...+.++|.+ . ||+|.++.++.....
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~-g~~V~vv~T~~A~~f 43 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVG-EIETHLVISQAARQT 43 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhc-CCeEEEEECHHHHHH
Confidence 467777777766 6669999999998 6 899999999975543
No 349
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.05 E-value=1.4e+02 Score=25.51 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=43.5
Q ss_pred cchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 043859 394 QRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQ 453 (484)
Q Consensus 394 Q~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~ 453 (484)
+..|++.. ++.|.=-.+-- +..+.+.|.++..+=|.|++.++++..+.++.+++.
T Consensus 110 ~~LN~aY~-~rFgfPfI~aV----kg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 110 TELNAAYV-ERFGFPFIIAV----KGNTKDTILAAFERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred HHHHHHHH-HhcCCceEEee----cCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 46788887 78997655442 567899999999999999887778888888887754
No 350
>PRK10637 cysG siroheme synthase; Provisional
Probab=36.46 E-value=4.8e+02 Score=26.65 Aligned_cols=95 Identities=6% Similarity=0.034 Sum_probs=51.9
Q ss_pred hhhhccCCCccccccccCchhHHHHHh-----cCCceeecccccccchhHHHH----HhhhcceEEeeecCCCCccCHHH
Q 043859 354 QIDILSHPSVGGFLSHCGWNSTLESIT-----NGVPMIVWPLYSEQRMNATIL----TEELGVAIRSKVLPSKGVVGREE 424 (484)
Q Consensus 354 q~~vL~~~~~~~~ItHgG~gs~~eal~-----~GvP~v~~P~~~DQ~~na~rv----~~~~G~g~~l~~~~~~~~~~~~~ 424 (484)
+..-|..+. ++|.--+--.+++.++ .|+++-+ .|++..+..+ .++-++-+.+.+... .-.-+..
T Consensus 66 ~~~dl~~~~--lv~~at~d~~~n~~i~~~a~~~~~lvN~----~d~~~~~~f~~pa~~~~g~l~iaisT~G~-sP~~a~~ 138 (457)
T PRK10637 66 DESLLDTCW--LAIAATDDDAVNQRVSEAAEARRIFCNV----VDAPKAASFIMPSIIDRSPLMVAVSSGGT-SPVLARL 138 (457)
T ss_pred ChHHhCCCE--EEEECCCCHHHhHHHHHHHHHcCcEEEE----CCCcccCeEEEeeEEecCCEEEEEECCCC-CcHHHHH
Confidence 344566777 6777777666666554 3444433 3554433221 123334444443111 1233467
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHhh
Q 043859 425 IKTMVRRILVDEEGYEIRAKVKELQRSAQKAW 456 (484)
Q Consensus 425 l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~ 456 (484)
|++.|++.+.. +...+.+.+.++++.+++..
T Consensus 139 lr~~ie~~~~~-~~~~~~~~~~~~R~~~k~~~ 169 (457)
T PRK10637 139 LREKLESLLPQ-HLGQVAKYAGQLRGRVKQQF 169 (457)
T ss_pred HHHHHHHhcch-hHHHHHHHHHHHHHHHHHhc
Confidence 88888888843 33447777788888776544
No 351
>PRK07206 hypothetical protein; Provisional
Probab=36.30 E-value=1.6e+02 Score=29.58 Aligned_cols=91 Identities=13% Similarity=-0.004 Sum_probs=51.1
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
++|+++-.... ...++++++++ |++++.++....... .. ... +... .....
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~-G~~~v~v~~~~~~~~---~~--~~~----~~~~-----~~~~~--------- 53 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKR-GIEPIAVTSSCLLDP---YY--YAS----FDTS-----DFIEV--------- 53 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHc-CCeEEEEEcCCCCch---hh--hcc----cCcc-----cchhh---------
Confidence 36777765433 34689999999 999998887642211 00 000 1000 00000
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCCeEEE--eCCchhhHHHHHHHhCCC
Q 043859 88 IISVIMREIKPAFRSAISALKTTPTALI--VDLFGTESLAIAEELQIP 133 (484)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~pD~VI--~D~~~~~~~~~A~~lgIP 133 (484)
+.. .....+.+.+++. ++|.|| +|.....+..+++.+++|
T Consensus 54 -i~~---~~~~~l~~~~~~~--~~d~vi~~~e~~~~~~a~l~~~l~l~ 95 (416)
T PRK07206 54 -IIN---GDIDDLVEFLRKL--GPEAIIAGAESGVELADRLAEILTPQ 95 (416)
T ss_pred -hcC---CCHHHHHHHHHHc--CCCEEEECCCccHHHHHHHHHhcCCC
Confidence 000 1123455567777 999999 444444555678889988
No 352
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=36.23 E-value=3.2e+02 Score=24.48 Aligned_cols=107 Identities=10% Similarity=0.145 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCCcc-C------hHHHHHHHHHHHh--cCCCeEEEEecCCCchhHHHHHhhhccCCCceEEE--ecCCCC
Q 043859 6 SKPHAVLLASPGVG-H------VIPVLELGKRLVT--LYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVI--EIPAPD 74 (484)
Q Consensus 6 ~~~~il~~~~p~~G-H------v~P~l~La~~L~~--r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~ 74 (484)
++|+-.+...-..| | ....+..|-.+.+ + |-+|.|+++.+....+.....+..+ ..++ .+-.+.
T Consensus 29 p~Mk~yIyg~r~~gi~IIdL~kT~~~L~~A~~~i~~~~-~~~ILfVgTk~~~~~~v~k~A~~~g----~~~v~~RWlgG~ 103 (204)
T PRK04020 29 KDMERFIYRVRPDGLYVLDVRKTDERIRIAAKFLSRYE-PEKILVVSSRQYGQKPVQKFAEVVG----AKAITGRFIPGT 103 (204)
T ss_pred CCCcccEeeecCCCCEEEcHHHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHhC----CeeecCccCCCc
Confidence 34555555444334 3 3344444443322 3 6789999998766555555555544 2222 111111
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEE-eCCch-hhHHHHHHHhCCCeEEEecccH
Q 043859 75 ISGLVDPDAAVVTIISVIMREIKPAFRSAISALKTTPTALI-VDLFG-TESLAIAEELQIPKYVYVGTNA 142 (484)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI-~D~~~-~~~~~~A~~lgIP~v~~~~~~~ 142 (484)
+.. ... -..+ .||+|| .|+.. .-+..=|.++|||+|.+.-+++
T Consensus 104 LTN-----~~~------------------~~~~--~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 104 LTN-----PSL------------------KGYI--EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CcC-----cch------------------hccC--CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 111 000 0124 788876 56543 3455689999999999886554
No 353
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=36.11 E-value=3.8e+02 Score=25.34 Aligned_cols=92 Identities=18% Similarity=0.126 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCeEEEEecCCCchhHHHH----HhhhccCCCc--eE-EEecCCCCCCCCCCCCchHHHHHHHHHHHhh
Q 043859 25 LELGKRLVTLYNFQVTIFVVASQTSAAESK----ILQSAMSSKL--CH-VIEIPAPDISGLVDPDAAVVTIISVIMREIK 97 (484)
Q Consensus 25 l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~----~~~~~~~~~~--~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (484)
.+|..+|.+. ||+||.++-......-.-. ..+......+ ++ ++.+-.....+. .=..+.+..+....-..-
T Consensus 12 ~~L~~~L~~~-gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~~I~~r-rWt~~~K~~i~~SRi~~T 89 (297)
T COG1090 12 RALTARLRKG-GHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGEPIAER-RWTEKQKEEIRQSRINTT 89 (297)
T ss_pred HHHHHHHHhC-CCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCCccccc-cCCHHHHHHHHHHHhHHH
Confidence 3577888888 9999999966543220000 0011000000 11 122222222111 001134444544444455
Q ss_pred HHHHHHHHhcCCCCeEEEeCC
Q 043859 98 PAFRSAISALKTTPTALIVDL 118 (484)
Q Consensus 98 ~~l~~~l~~~~~~pD~VI~D~ 118 (484)
..+.+++.+.+.+|.+.|+-.
T Consensus 90 ~~L~e~I~~~~~~P~~~isaS 110 (297)
T COG1090 90 EKLVELIAASETKPKVLISAS 110 (297)
T ss_pred HHHHHHHHhccCCCcEEEecc
Confidence 567777776677999988764
No 354
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=35.86 E-value=3.1e+02 Score=24.20 Aligned_cols=107 Identities=8% Similarity=0.004 Sum_probs=56.4
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCC--eEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchH
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNF--QVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAV 85 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh--~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 85 (484)
|||+++..+.-+- +.++.+.+.+. ++ +|.++.+....... ....+..+ +.+..++......
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~-~l~~~I~~vi~~~~~~~~-~~~A~~~g----ip~~~~~~~~~~~-------- 63 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEG-KIPASVVLVISNKPDAYG-LERAAQAG----IPTFVLSLKDFPS-------- 63 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcC-CCCceEEEEEECCccchH-HHHHHHcC----CCEEEECccccCc--------
Confidence 5788877765544 44666777765 44 77776555422221 23334444 5444433221111
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCc-hhhHHHHHHHhCCCeEEEecc
Q 043859 86 VTIISVIMREIKPAFRSAISALKTTPTALIVDLF-GTESLAIAEELQIPKYVYVGT 140 (484)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~-~~~~~~~A~~lgIP~v~~~~~ 140 (484)
.....+.+.+.++++ +||++|+-.+ ......+-......++-++++
T Consensus 64 -------~~~~~~~~~~~l~~~--~~D~iv~~~~~~il~~~~l~~~~~~~iNiHps 110 (190)
T TIGR00639 64 -------REAFDQAIIEELRAH--EVDLVVLAGFMRILGPTFLSRFAGRILNIHPS 110 (190)
T ss_pred -------hhhhhHHHHHHHHhc--CCCEEEEeCcchhCCHHHHhhccCCEEEEeCC
Confidence 011124566778888 9999987643 333333444444456666544
No 355
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.73 E-value=66 Score=30.64 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=39.7
Q ss_pred hccCCCccccccccCchhHHHHHhc----CCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHH
Q 043859 357 ILSHPSVGGFLSHCGWNSTLESITN----GVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRI 432 (484)
Q Consensus 357 vL~~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~v 432 (484)
+...++ ++|+=||-||++.+... ++|++.+-.. . +|-. -..+++++.+++.++
T Consensus 61 ~~~~~d--lvi~lGGDGT~L~aa~~~~~~~~PilGIN~G------------~--lGFL-------t~~~~~~~~~~l~~i 117 (292)
T PRK01911 61 LDGSAD--MVISIGGDGTFLRTATYVGNSNIPILGINTG------------R--LGFL-------ATVSKEEIEETIDEL 117 (292)
T ss_pred cccCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEecC------------C--CCcc-------cccCHHHHHHHHHHH
Confidence 334566 89999999999999773 6788777321 1 2211 345678888888888
Q ss_pred hccc
Q 043859 433 LVDE 436 (484)
Q Consensus 433 l~~~ 436 (484)
+++.
T Consensus 118 ~~g~ 121 (292)
T PRK01911 118 LNGD 121 (292)
T ss_pred HcCC
Confidence 8764
No 356
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=35.73 E-value=5.3e+02 Score=26.88 Aligned_cols=93 Identities=9% Similarity=0.045 Sum_probs=53.1
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHH-hcCCCeEEEEecCCC-chhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCch
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLV-TLYNFQVTIFVVASQ-TSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAA 84 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~-~r~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 84 (484)
.+|+++..-|. -.+.+++.|. +- |-+|+.+.+... .+...+ .++..+ ..... + ++. +
T Consensus 328 GKrvai~~gg~-----~~~~~~~~l~~El-Gmevv~~~t~~~~~~d~~~-~~~~~~--~~~~~--i-----~D~-----~ 386 (513)
T TIGR01861 328 GKKVCLWPGGS-----KLWHWAHVIEEEM-GLKVVSVYSKFGHQGDMEK-GVARCG--EGALA--I-----DDP-----N 386 (513)
T ss_pred CCEEEEECCch-----HHHHHHHHHHHhC-CCEEEEEeccCCCHHHHHH-HHHhCC--CCcEE--e-----cCC-----C
Confidence 45777776653 4677788887 57 899988877642 222211 222222 00000 0 010 0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEE
Q 043859 85 VVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVY 137 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~ 137 (484)
. ....+.+++. +||++|..... ..+|+++|||++-.
T Consensus 387 ~------------~e~~~~l~~~--~~Dllig~s~~---~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 387 E------------LEGLEAMEML--KPDIILTGKRP---GEVSKKMRVPYLNA 422 (513)
T ss_pred H------------HHHHHHHHhc--CCCEEEecCcc---chhHhhcCCCEEEc
Confidence 0 0112455667 99999988543 36799999998764
No 357
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.70 E-value=76 Score=30.33 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=39.3
Q ss_pred cCCCccccccccCchhHHHHHh----cCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhc
Q 043859 359 SHPSVGGFLSHCGWNSTLESIT----NGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILV 434 (484)
Q Consensus 359 ~~~~~~~~ItHgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~ 434 (484)
..++ ++|+=||-||++.+.. .++|++.+-. - + +|-. -.++.+++.+++.++++
T Consensus 67 ~~~D--~vi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G----~--lGFL-------~~~~~~~~~~~l~~i~~ 123 (296)
T PRK04539 67 QYCD--LVAVLGGDGTFLSVAREIAPRAVPIIGINQ--------G----H--LGFL-------TQIPREYMTDKLLPVLE 123 (296)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhcccCCCEEEEec--------C----C--CeEe-------eccCHHHHHHHHHHHHc
Confidence 3566 8999999999999964 3778887731 1 1 2322 24577889999999887
Q ss_pred cc
Q 043859 435 DE 436 (484)
Q Consensus 435 ~~ 436 (484)
+.
T Consensus 124 g~ 125 (296)
T PRK04539 124 GK 125 (296)
T ss_pred CC
Confidence 64
No 358
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=35.54 E-value=97 Score=28.30 Aligned_cols=99 Identities=10% Similarity=0.050 Sum_probs=51.4
Q ss_pred CCeEEEEecCCCC---CCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCC
Q 043859 268 SESVLYVSFGSGG---TLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDI 344 (484)
Q Consensus 268 ~~~~v~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 344 (484)
+++.|.+..|+.. ..+.+.+.++++.+...+.+++....... .....-+.+.+.....
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~-------------------~~~~~~~~~~~~~~~~ 164 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE-------------------QEKEIADQIAAGLQNP 164 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH-------------------HHHHHHHHHHTTHTTT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH-------------------HHHHHHHHHHHhcccc
Confidence 4567888888753 45677789999999877766554431110 0000000111111111
Q ss_pred ceEecC--Ccch-hhhccCCCccccccccCchhHHHHHhcCCceeec
Q 043859 345 GVVVPQ--WAPQ-IDILSHPSVGGFLSHCGWNSTLESITNGVPMIVW 388 (484)
Q Consensus 345 ~v~v~~--~ipq-~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~ 388 (484)
.+.+.. -+.+ .+++++++ ++|+.- .|.++=|.+.|+|+|++
T Consensus 165 ~~~~~~~~~l~e~~ali~~a~--~~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 165 VINLAGKTSLRELAALISRAD--LVIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp TEEETTTS-HHHHHHHHHTSS--EEEEES-SHHHHHHHHTT--EEEE
T ss_pred eEeecCCCCHHHHHHHHhcCC--EEEecC-ChHHHHHHHHhCCEEEE
Confidence 233322 2333 57889999 788865 46788899999999998
No 359
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=35.52 E-value=68 Score=32.90 Aligned_cols=55 Identities=11% Similarity=0.113 Sum_probs=38.2
Q ss_pred cCCCccccccccCchhHHHHHhc----CCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhc
Q 043859 359 SHPSVGGFLSHCGWNSTLESITN----GVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILV 434 (484)
Q Consensus 359 ~~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~ 434 (484)
..++ ++|+=||-||++.+... ++|++.+ |.- . +|-. -.++.+++.++|.+++.
T Consensus 261 ~~~D--lVIsiGGDGTlL~Aar~~~~~~iPILGI--------N~G----~--LGFL-------t~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 261 TKVD--LVITLGGDGTVLWAASMFKGPVPPVVPF--------SMG----S--LGFM-------TPFHSEQYRDCLDAILK 317 (508)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhccCCCcEEEE--------eCC----C--ccee-------cccCHHHHHHHHHHHHc
Confidence 3466 89999999999999774 4576655 211 1 2222 24577889999999987
Q ss_pred cc
Q 043859 435 DE 436 (484)
Q Consensus 435 ~~ 436 (484)
++
T Consensus 318 G~ 319 (508)
T PLN02935 318 GP 319 (508)
T ss_pred CC
Confidence 64
No 360
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=35.30 E-value=87 Score=30.15 Aligned_cols=131 Identities=12% Similarity=-0.041 Sum_probs=71.4
Q ss_pred eEEE-EecCCC--CCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCce
Q 043859 270 SVLY-VSFGSG--GTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGV 346 (484)
Q Consensus 270 ~~v~-vs~Gs~--~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v 346 (484)
+.|. +-.||. -..+.+.+.++++.+...+.++++..+++.+ ...-+.+.+.. .++
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e--------------------~~~~~~i~~~~--~~~ 236 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHE--------------------EQRAKRLAEGF--PYV 236 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHH--------------------HHHHHHHHccC--Ccc
Confidence 3443 444443 2356777888888886667776654332211 00001111111 122
Q ss_pred Eec--CCcch-hhhccCCCccccccccCchhHHHHHhcCCceeecccccccch------hHHHHHhhhcceEEeeecCCC
Q 043859 347 VVP--QWAPQ-IDILSHPSVGGFLSHCGWNSTLESITNGVPMIVWPLYSEQRM------NATILTEELGVAIRSKVLPSK 417 (484)
Q Consensus 347 ~v~--~~ipq-~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~P~~~DQ~~------na~rv~~~~G~g~~l~~~~~~ 417 (484)
.+. ..+.+ .+++++++ ++|+.- .|.++=|.+.|+|.|++=-..|... |...+ +.- .--+
T Consensus 237 ~l~g~~sL~elaali~~a~--l~I~nD-SGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~-~~~--~~cm------ 304 (322)
T PRK10964 237 EVLPKLSLEQVARVLAGAK--AVVSVD-TGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHAC-RSP--GKSM------ 304 (322)
T ss_pred eecCCCCHHHHHHHHHhCC--EEEecC-CcHHHHHHHhCCCEEEEECCCCcccccCCCCCceee-cCC--Cccc------
Confidence 222 23444 46899999 788876 5688889999999999832222111 11111 100 0001
Q ss_pred CccCHHHHHHHHHHHhc
Q 043859 418 GVVGREEIKTMVRRILV 434 (484)
Q Consensus 418 ~~~~~~~l~~~i~~vl~ 434 (484)
..++++.+.++++++|+
T Consensus 305 ~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 305 ADLSAETVFQKLETLIS 321 (322)
T ss_pred ccCCHHHHHHHHHHHhh
Confidence 46788999998888764
No 361
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.19 E-value=52 Score=29.57 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=24.0
Q ss_pred CCCCCCCCeEEEEcC--CCccChHHHHHHHHHHHhcCCCeEEEEecC
Q 043859 1 MESSSSKPHAVLLAS--PGVGHVIPVLELGKRLVTLYNFQVTIFVVA 45 (484)
Q Consensus 1 m~~~~~~~~il~~~~--p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~ 45 (484)
|+.+..+++|++... ++.|| +||+++++. |+.|. +|.-
T Consensus 1 ~e~~~~~k~VlItgcs~GGIG~-----ala~ef~~~-G~~V~-AtaR 40 (289)
T KOG1209|consen 1 SELQSQPKKVLITGCSSGGIGY-----ALAKEFARN-GYLVY-ATAR 40 (289)
T ss_pred CCcccCCCeEEEeecCCcchhH-----HHHHHHHhC-CeEEE-EEcc
Confidence 455444445555443 34554 689999999 99986 4443
No 362
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=35.18 E-value=1.1e+02 Score=26.21 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=33.9
Q ss_pred HHHHHhhHHHHHHHHhcCCCCeEEEeCCchhh-------------H--HHHHHHhCCCeEEEecc
Q 043859 91 VIMREIKPAFRSAISALKTTPTALIVDLFGTE-------------S--LAIAEELQIPKYVYVGT 140 (484)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~-------------~--~~~A~~lgIP~v~~~~~ 140 (484)
..+......+.+++++. +||.++.+..++. + ..++...|||++-+.++
T Consensus 44 ~Rl~~I~~~l~~~i~~~--~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 44 ERLKQIYDGLSELIDEY--QPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHHHHHHHHh--CCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 34555667889999999 9999988754332 1 13677889998877543
No 363
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=34.98 E-value=1.8e+02 Score=21.31 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHH----------HHHhhhcCCCChHHHHHHHHHHHhhhhhcCC
Q 043859 423 EEIKTMVRRILVDEEGYEIRAKVKELQRS----------AQKAWTRESGSSYSSLARLAKECGMMTKRNA 482 (484)
Q Consensus 423 ~~l~~~i~~vl~~~~~~~~~~~a~~l~~~----------~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~~ 482 (484)
+.|.+.-.++|..+.-+++++.++.+.-- ++-+- ..--.+...+.+++++|++++...+
T Consensus 9 dgLveKytELL~Ge~~~e~~EkVk~W~lYshiaKsMPpL~kHWN-~~~PeaK~~ik~li~~Ik~lNe~~r 77 (82)
T PF10835_consen 9 DGLVEKYTELLLGETSPEMKEKVKQWALYSHIAKSMPPLAKHWN-GTYPEAKEEIKELIEEIKQLNEAHR 77 (82)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhCcHHHHhhc-ccCchHHHHHHHHHHHHHHHHHHHH
Confidence 44666666777654444577777665433 22212 2334455689999999999986543
No 364
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.87 E-value=2.4e+02 Score=28.11 Aligned_cols=120 Identities=13% Similarity=0.002 Sum_probs=74.7
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCc-----
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDA----- 83 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----- 83 (484)
..++++.|+..=..-+-+|..+...+ =-.|+++++.-....+.+.++...+ .+++++++...--+..+-.+.
T Consensus 85 dtlILavtaDAY~~VL~ql~~~~L~~-vk~iVLvSPtfGS~~lv~~~l~~~~--~~~EVISFStY~gdTr~~d~~~~~~v 161 (429)
T PF10100_consen 85 DTLILAVTADAYLDVLQQLPWEVLKR-VKSIVLVSPTFGSHLLVKGFLNDLG--PDAEVISFSTYYGDTRWSDGEQPNRV 161 (429)
T ss_pred cEEEEEechHHHHHHHHhcCHHHHhh-CCEEEEECcccchHHHHHHHHHhcC--CCceEEEeecccccceeccCCCccee
Confidence 56777777766666666777666665 3566767776666777777777766 467777777543232211111
Q ss_pred ---hHHHHH----HHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 84 ---AVVTII----SVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 84 ---~~~~~~----~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
..+..+ ...-......+..+++++ +.+++++| ....|+..||-.++..
T Consensus 162 lt~~vK~kiYigSt~~~s~~~~~l~~~~~~~--gI~~~~~~-----~pl~AE~rNislYVHp 216 (429)
T PF10100_consen 162 LTTAVKKKIYIGSTHSNSPELDKLCRLLAQL--GIQLEVMD-----NPLEAESRNISLYVHP 216 (429)
T ss_pred hhhhhhceEEEEeCCCCChHHHHHHHHHHHc--CCeEEEeC-----ChHhhhhcccceecCC
Confidence 111111 011112345677888888 99999999 4567999999877643
No 365
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=34.86 E-value=2.2e+02 Score=24.22 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=44.0
Q ss_pred CCeEEEEcCC-------CccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCC
Q 043859 7 KPHAVLLASP-------GVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPA 72 (484)
Q Consensus 7 ~~~il~~~~p-------~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 72 (484)
.+|++|+-.| +..|+.-++.=|++|++. |.+..+..+-+ -+++...+...++....++|..=+.
T Consensus 43 GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksK-GVd~iicvSVn-DpFv~~aW~k~~g~~~~V~f~aD~~ 113 (171)
T KOG0541|consen 43 GKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSK-GVDEIICVSVN-DPFVMKAWAKSLGANDHVKFVADPA 113 (171)
T ss_pred CceEEEEcCCCccCCccccccCchHHHHHHHHHhc-CCcEEEEEecC-cHHHHHHHHhhcCccceEEEEecCC
Confidence 3577777665 568999999999999998 98776665543 2455556666666434566654443
No 366
>PRK00784 cobyric acid synthase; Provisional
Probab=34.75 E-value=4.7e+02 Score=27.01 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=27.6
Q ss_pred EEEEcC-CCccChHHHHHHHHHHHhcCCCeEEEEec
Q 043859 10 AVLLAS-PGVGHVIPVLELGKRLVTLYNFQVTIFVV 44 (484)
Q Consensus 10 il~~~~-p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~ 44 (484)
|++... ...|-..=...|++.|+++ |++|..+=+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~-G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARR-GYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEecccc
Confidence 455433 5789999999999999999 999987754
No 367
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=34.62 E-value=51 Score=33.77 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=34.7
Q ss_pred CCCCeEEEEcCCCccChHHH------------HHHHHHHHhcCCCeEEEEecCC
Q 043859 5 SSKPHAVLLASPGVGHVIPV------------LELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~------------l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
.+.+||++...|+.=.+.|. .+||+++..+ |++||+++.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~-GA~VtlI~Gp~ 306 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA-GAEVTLISGPV 306 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC-CCcEEEEeCCc
Confidence 35679999998888888775 6899999999 99999999763
No 368
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=34.60 E-value=4.4e+02 Score=25.58 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=57.7
Q ss_pred CCeEEEEcCCCcc---C--hHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCC
Q 043859 7 KPHAVLLASPGVG---H--VIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDP 81 (484)
Q Consensus 7 ~~~il~~~~p~~G---H--v~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (484)
+.-|+|.|..+.| + ..-+..|++.|.++ |++|.+++.+.-.+. .+.+....+....-+...+. +.
T Consensus 180 ~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~-~~~vvl~Gg~~e~~~-~~~i~~~~~~~~~~~~~~l~-----g~--- 249 (348)
T PRK10916 180 RPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDE-GYQVVLFGSAKDHEA-GNEILAALNTEQQAWCRNLA-----GE--- 249 (348)
T ss_pred CCEEEEeCCCCCccccCCCHHHHHHHHHHHHHC-CCeEEEEeCHHhHHH-HHHHHHhcccccccceeecc-----CC---
Confidence 3456666643222 1 33578999999888 899999887753322 22232222200000001010 00
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEec
Q 043859 82 DAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVG 139 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~ 139 (484)
. ...++..+++ +-|++|+- ..+...+|..+|+|+|.++.
T Consensus 250 -~------------sL~el~ali~----~a~l~I~n--DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 250 -T------------QLEQAVILIA----ACKAIVTN--DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred -C------------CHHHHHHHHH----hCCEEEec--CChHHHHHHHhCCCEEEEEC
Confidence 0 1123345555 55888866 45567899999999999874
No 369
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=34.25 E-value=59 Score=29.21 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCeEEEeCCchhhH-------HHHHHHhCCCeEEEe
Q 043859 97 KPAFRSAISALKTTPTALIVDLFGTES-------LAIAEELQIPKYVYV 138 (484)
Q Consensus 97 ~~~l~~~l~~~~~~pD~VI~D~~~~~~-------~~~A~~lgIP~v~~~ 138 (484)
.+.+.++++++...||+|++|.+-... ..+...+++|+|-+.
T Consensus 80 ~p~l~~~~~~l~~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 80 GPPLLEALEKLKTKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 456777888886679999999765532 124445678888765
No 370
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=34.02 E-value=74 Score=31.88 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=39.5
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhc
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSA 59 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~ 59 (484)
++.+||++.-.++. ...=...+.+.|++. |++|.++.++.-...+...-++..
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~-g~~V~vv~T~~A~~fi~~~~l~~l 56 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKA-GADVRVVMTEAAKKFVTPLTFQAL 56 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhC-CCEEEEEECHhHHHHHhHHHHHHh
Confidence 45678888777766 555789999999999 999999999976655554444443
No 371
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=33.78 E-value=57 Score=28.36 Aligned_cols=29 Identities=24% Similarity=0.104 Sum_probs=20.1
Q ss_pred CCeEEEeCCchhh--HHHHHHHhCCCeEEEe
Q 043859 110 TPTALIVDLFGTE--SLAIAEELQIPKYVYV 138 (484)
Q Consensus 110 ~pD~VI~D~~~~~--~~~~A~~lgIP~v~~~ 138 (484)
+||+||....... ....-+..|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 9999998654332 2234567999988764
No 372
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=33.77 E-value=4.5e+02 Score=25.45 Aligned_cols=100 Identities=18% Similarity=0.249 Sum_probs=58.8
Q ss_pred CCeEEEEcCCCc-c----ChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCC
Q 043859 7 KPHAVLLASPGV-G----HVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDP 81 (484)
Q Consensus 7 ~~~il~~~~p~~-G----Hv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (484)
+..|+|.|..+. . -..-+..|++.|.++ |.+|.++.++. .....+.+....+ .... + ..
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~-~~~Vvl~g~~~-e~e~~~~i~~~~~----~~~~---------l-~~ 238 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAK-GYQVVLFGGPD-EEERAEEIAKGLP----NAVI---------L-AG 238 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHC-CCEEEEecChH-HHHHHHHHHHhcC----Cccc---------c-CC
Confidence 356677666233 2 245688999999999 88999888882 2222233333332 1100 1 11
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecc
Q 043859 82 DAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGT 140 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~ 140 (484)
..+ ..++..+++ ..|++|+- ..+...+|..+|.|+|.++..
T Consensus 239 k~s------------L~e~~~li~----~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 239 KTS------------LEELAALIA----GADLVIGN--DSGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred CCC------------HHHHHHHHh----cCCEEEcc--CChHHHHHHHcCCCEEEEECC
Confidence 111 122333333 66888865 455678999999999998854
No 373
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.13 E-value=70 Score=30.71 Aligned_cols=55 Identities=11% Similarity=0.155 Sum_probs=38.5
Q ss_pred cCCCccccccccCchhHHHHHhc----CCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhc
Q 043859 359 SHPSVGGFLSHCGWNSTLESITN----GVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILV 434 (484)
Q Consensus 359 ~~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~ 434 (484)
..++ ++|+=||-||++.+... ++|++.+-. - .+|-. -..+.+++.+++.++++
T Consensus 67 ~~~D--lvi~iGGDGTlL~aar~~~~~~iPilGIN~--------G------~lGFL-------t~~~~~~~~~~l~~l~~ 123 (305)
T PRK02649 67 SSMK--FAIVLGGDGTVLSAARQLAPCGIPLLTINT--------G------HLGFL-------TEAYLNQLDEAIDQVLA 123 (305)
T ss_pred cCcC--EEEEEeCcHHHHHHHHHhcCCCCcEEEEeC--------C------CCccc-------ccCCHHHHHHHHHHHHc
Confidence 3456 89999999999999764 778887731 1 12211 23567888888988887
Q ss_pred cc
Q 043859 435 DE 436 (484)
Q Consensus 435 ~~ 436 (484)
+.
T Consensus 124 g~ 125 (305)
T PRK02649 124 GQ 125 (305)
T ss_pred CC
Confidence 64
No 374
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=33.10 E-value=1.7e+02 Score=29.35 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=27.2
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCch
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTS 49 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 49 (484)
..+|++++.-+ .-.+++++.|.+- |-+|+.++++....
T Consensus 273 ~Gkrv~i~gd~-----~~~~~l~~~L~el-Gm~~v~~~t~~~~~ 310 (407)
T TIGR01279 273 RGKKIFFFGDN-----LLELPLARFLKRC-GMEVVECGTPYIHR 310 (407)
T ss_pred CCCEEEEECCc-----hHHHHHHHHHHHC-CCEEEEecCCCCCh
Confidence 35677776543 4567888888888 89998888775443
No 375
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.06 E-value=79 Score=30.37 Aligned_cols=55 Identities=18% Similarity=0.149 Sum_probs=39.3
Q ss_pred cCCCccccccccCchhHHHHHhc----CCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhc
Q 043859 359 SHPSVGGFLSHCGWNSTLESITN----GVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILV 434 (484)
Q Consensus 359 ~~~~~~~~ItHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~ 434 (484)
..++ ++|+=||-||++.+... ++|++.+... .+|-. -....+++.+++.++++
T Consensus 71 ~~~D--~vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL-------~~~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 71 DGCE--LVLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFL-------AEAEAEDLDEAVERVVD 127 (306)
T ss_pred cCCC--EEEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCcee-------ccCCHHHHHHHHHHHHc
Confidence 4566 89999999999998764 7888887431 12222 24567888888888887
Q ss_pred cc
Q 043859 435 DE 436 (484)
Q Consensus 435 ~~ 436 (484)
+.
T Consensus 128 g~ 129 (306)
T PRK03372 128 RD 129 (306)
T ss_pred CC
Confidence 64
No 376
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=33.04 E-value=67 Score=32.07 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=36.9
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhh
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQ 57 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~ 57 (484)
+.+||++...++.|= .-...+.+.|++. |++|.++.++.-...+....++
T Consensus 2 ~~k~IllgiTGSiaa-~~~~~ll~~L~~~-g~~V~vv~T~~A~~fv~~~~l~ 51 (390)
T TIGR00521 2 ENKKILLGVTGGIAA-YKTVELVRELVRQ-GAEVKVIMTEAAKKFITPLTLE 51 (390)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHhC-CCEEEEEECHhHHHHHHHHHHH
Confidence 356887776665555 5589999999999 9999999999765554444333
No 377
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=33.03 E-value=98 Score=30.24 Aligned_cols=115 Identities=16% Similarity=0.117 Sum_probs=66.8
Q ss_pred CCeEEEEcCC--CccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCch
Q 043859 7 KPHAVLLASP--GVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAA 84 (484)
Q Consensus 7 ~~~il~~~~p--~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 84 (484)
++||.+++.+ ++|==+-..++.+.+... |.+|.-+-..+. .+++.. +..+....+++....+..
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~-g~eV~Gi~~Gy~------GL~~~~-------i~~l~~~~v~~~~~~GGT 67 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKE-GLEVFGIYNGYL------GLLEGD-------IKPLTREDVDDLINRGGT 67 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHc-CCEEEEEecchh------hhcCCc-------ceeccccchhHHHhcCCe
Confidence 4688888876 677777888999999999 999987776631 122211 222222222222111110
Q ss_pred HHH--HH-HHHHHHhhHHHHHHHHhcCCCCeEEE---eCCchhhHHHHHHHhCCCeEEE
Q 043859 85 VVT--II-SVIMREIKPAFRSAISALKTTPTALI---VDLFGTESLAIAEELQIPKYVY 137 (484)
Q Consensus 85 ~~~--~~-~~~~~~~~~~l~~~l~~~~~~pD~VI---~D~~~~~~~~~A~~lgIP~v~~ 137 (484)
... ++ ........+...+-++++ ..|.+| -|.....+..++++.++|+|-+
T Consensus 68 ~lgssR~~~~~~~e~~~~~~~~l~~~--gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 68 FLGSARFPEFKTEEGRKVAAENLKKL--GIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred EEeeCCCCCcccHHHHHHHHHHHHHc--CCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 000 00 001112223445556667 888877 5666777788999999998864
No 378
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=32.95 E-value=1.2e+02 Score=26.69 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=28.8
Q ss_pred hHHHHHHHHhcCCCCeEEEeCCc-hhhHHHHHHHhCCCeEEEecc
Q 043859 97 KPAFRSAISALKTTPTALIVDLF-GTESLAIAEELQIPKYVYVGT 140 (484)
Q Consensus 97 ~~~l~~~l~~~~~~pD~VI~D~~-~~~~~~~A~~lgIP~v~~~~~ 140 (484)
...+.+++++......++|..++ .+.+..+|++.++|.|.+.|.
T Consensus 46 ~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 46 IAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred HHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCC
Confidence 44567777777222246666544 344556899999999887654
No 379
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=32.53 E-value=2.5e+02 Score=24.28 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=34.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHh----------cCCCeEEEEecCCCchhHHHHHh
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVT----------LYNFQVTIFVVASQTSAAESKIL 56 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~----------r~Gh~Vt~~~~~~~~~~~~~~~~ 56 (484)
.++|...++.|=..-++.++..+.. + +..|.|+..+.....+.+.+.
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~-~~~Vl~i~~E~~~~~~~~rl~ 90 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPR-PGRVLYISLEDSESQIARRLR 90 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT----------EEEEESSS-HHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCccccc-CceEEEEeccCCHHHHHHHHH
Confidence 4677777899999999999999987 5 689999999987655555543
No 380
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=32.47 E-value=69 Score=33.35 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 98 PAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 98 ~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
..+.+.+++. +||+||.+.+ ...+|+++|||++.++
T Consensus 364 ~ei~~~I~~~--~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARV--EPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhc--CCCEEEECch---hhHHHHHhCCCEEEee
Confidence 3456666777 9999999962 4456899999998765
No 381
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=32.27 E-value=2.5e+02 Score=29.36 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=34.1
Q ss_pred hhHHHHHHHHhcCCCCeEEE----eCCchhhHHHHHHHhCCCeEEEeccc
Q 043859 96 IKPAFRSAISALKTTPTALI----VDLFGTESLAIAEELQIPKYVYVGTN 141 (484)
Q Consensus 96 ~~~~l~~~l~~~~~~pD~VI----~D~~~~~~~~~A~~lgIP~v~~~~~~ 141 (484)
....++..++.. .+|.+| ||-..++...+|-+++||.|.+...+
T Consensus 97 iA~~iE~~~~a~--~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gGp 144 (552)
T PRK00911 97 IADSIETVVNAH--WFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGGP 144 (552)
T ss_pred HHHHHHHHhhCC--CcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 334555666666 899888 89888888889999999999987543
No 382
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=31.95 E-value=3e+02 Score=22.85 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=27.8
Q ss_pred EEcCCCccChHHHHHHHHHHHhcCCCeEEEEecC
Q 043859 12 LLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVA 45 (484)
Q Consensus 12 ~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~ 45 (484)
++..+..--+.|..-++...++. |++|+++.+-
T Consensus 8 Il~SG~~dk~~~a~iias~A~A~-G~EV~VF~Tf 40 (137)
T COG2210 8 ILASGTLDKAYAALIIASGAAAM-GYEVTVFFTF 40 (137)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeH
Confidence 33446777889999999999999 9999999885
No 383
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=31.95 E-value=1.5e+02 Score=29.56 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=40.0
Q ss_pred ccChHHHH---HHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHH
Q 043859 18 VGHVIPVL---ELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMR 94 (484)
Q Consensus 18 ~GHv~P~l---~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 94 (484)
.||+.|++ .+|+-++.+ ||+|.|++...-...-...-.+..+ . + ...+..
T Consensus 16 lGH~~~~l~ADv~aR~~r~~-G~~v~~~tGtDehG~~i~~~A~~~g----~------------------~----p~~~~~ 68 (391)
T PF09334_consen 16 LGHLYPYLAADVLARYLRLR-GHDVLFVTGTDEHGSKIETAAEKQG----I------------------D----PEEFCD 68 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-T-EEEEEEEEE-SSHHHHHHHHHTT----S-----------------------HHHHHH
T ss_pred CChhHHHHHHHHHHHHHhhc-ccceeeEEecchhhHHHHHHHHHcC----C------------------C----HHHHHH
Confidence 59999776 578888898 9999999866432211111111111 1 1 234455
Q ss_pred HhhHHHHHHHHhcCCCCeEEE
Q 043859 95 EIKPAFRSAISALKTTPTALI 115 (484)
Q Consensus 95 ~~~~~l~~~l~~~~~~pD~VI 115 (484)
.....++++++.++-.+|.-+
T Consensus 69 ~~~~~~~~~~~~~~I~~D~F~ 89 (391)
T PF09334_consen 69 KYSAKFKELLEALNISYDRFI 89 (391)
T ss_dssp HHHHHHHHHHHHTT---SEEE
T ss_pred HHHHHHHHHHHHcCCCCccee
Confidence 566677788877755677666
No 384
>PRK14098 glycogen synthase; Provisional
Probab=31.81 E-value=76 Score=32.80 Aligned_cols=36 Identities=8% Similarity=0.177 Sum_probs=28.7
Q ss_pred CeEEEEcC--------CCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 8 PHAVLLAS--------PGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 8 ~~il~~~~--------p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
|||+|++. ++.|++ .-+|.++|+++ ||+|.++.+-.
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~~-g~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADF--MASFPQALEEE-GFEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHH--HHHHHHHHHHC-CCeEEEEcCCC
Confidence 99999875 344444 56788999999 99999999865
No 385
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=31.70 E-value=51 Score=27.19 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=24.3
Q ss_pred EEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 11 VLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 11 l~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
++-|.-..-.+.-.+=++..|+++ ||+|++++++.
T Consensus 3 lLGCPe~Pvq~p~alYl~~~Lk~~-G~~v~Va~npA 37 (139)
T PF09001_consen 3 LLGCPEVPVQTPSALYLSYKLKKK-GFEVVVAGNPA 37 (139)
T ss_dssp E---S-STTHHHHHHHHHHHHHCT-TEEEEEEE-HH
T ss_pred cccCCCCcchhHHHHHHHHHHHhc-CCeEEEecCHH
Confidence 344444555566678899999999 99999999984
No 386
>PTZ00445 p36-lilke protein; Provisional
Probab=31.61 E-value=2.2e+02 Score=25.68 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=58.9
Q ss_pred cChHH-HHHHHHHHHhcCCCeEEEEecCCCch-------------hHHHHHhhhccCCCceEEEecCCCCCCCCCCCCch
Q 043859 19 GHVIP-VLELGKRLVTLYNFQVTIFVVASQTS-------------AAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAA 84 (484)
Q Consensus 19 GHv~P-~l~La~~L~~r~Gh~Vt~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 84 (484)
+|+.| +..+.++|.+. |..|+++|...... .+.+.-+.... .......+-. .. |.-++
T Consensus 74 ~~~tpefk~~~~~l~~~-~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~--~~~~i~~~~~--yy---p~~w~ 145 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNS-NIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSK--CDFKIKKVYA--YY---PKFWQ 145 (219)
T ss_pred ccCCHHHHHHHHHHHHC-CCeEEEEEccchhhccccCCcceechHHHHHHHHHhcC--ccceeeeeee--eC---CcccC
Confidence 56677 88899999999 99999999765321 11222222222 1122221110 00 11111
Q ss_pred HHHHHHH--HHH--Hhh--HHHHHHHHhcCC-CCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 85 VVTIISV--IMR--EIK--PAFRSAISALKT-TPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 85 ~~~~~~~--~~~--~~~--~~l~~~l~~~~~-~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
....+.. +.+ ... -+++.++++.+- .-+++..|- ....+.+|+++|+-.+.+.
T Consensus 146 ~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD-~~~NVeaA~~lGi~ai~f~ 205 (219)
T PTZ00445 146 EPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDD-DMNNCKNALKEGYIALHVT 205 (219)
T ss_pred ChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecC-CHHHHHHHHHCCCEEEEcC
Confidence 1111100 000 011 133777777743 446788885 4557889999999988765
No 387
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=31.53 E-value=2.9e+02 Score=27.70 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=25.2
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
|||+++-.+..+ ..|++++++- |+.+++++.+.
T Consensus 1 ~kiliiG~G~~~-----~~l~~~~~~~-~~~~~~~~~~~ 33 (423)
T TIGR00877 1 MKVLVIGNGGRE-----HALAWKLAQS-PLVKYVYVAPG 33 (423)
T ss_pred CEEEEECCChHH-----HHHHHHHHhC-CCccEEEEECC
Confidence 688888887774 4688889887 88777776664
No 388
>PRK11519 tyrosine kinase; Provisional
Probab=31.51 E-value=5.6e+02 Score=28.01 Aligned_cols=42 Identities=12% Similarity=0.283 Sum_probs=32.6
Q ss_pred CCeEEEEcC--CCccChHHHHHHHHHHHhcCCCeEEEEecCCCch
Q 043859 7 KPHAVLLAS--PGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTS 49 (484)
Q Consensus 7 ~~~il~~~~--p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 49 (484)
+.|+++++. |+.|--.-...||..|+.. |++|.++-......
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~-g~rvLlID~Dlr~~ 568 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQT-NKRVLLIDCDMRKG 568 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCCCC
Confidence 335555444 7999999999999999999 99999997664433
No 389
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.37 E-value=4.7e+02 Score=25.38 Aligned_cols=119 Identities=11% Similarity=0.045 Sum_probs=64.0
Q ss_pred EEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCC-chhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHH
Q 043859 11 VLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQ-TSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTII 89 (484)
Q Consensus 11 l~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 89 (484)
+++++|+..-..-+.+|-.++..+ .+-++..++.+ ...+........+ .+.+++++...--+...-......+.+
T Consensus 89 lilav~aDaY~dvlqqi~~e~L~~--vk~viLiSptfGsn~lv~~~mnk~~--~daeViS~SsY~~dTk~id~~~p~~al 164 (431)
T COG4408 89 LILAVPADAYYDVLQQIPWEALPQ--VKSVILISPTFGSNLLVQNLMNKAG--RDAEVISLSSYYADTKYIDAEQPNRAL 164 (431)
T ss_pred EEEEeecHHHHHHHhcCCHhHhcc--ccEEEEecccccccHHHHHHHhhhC--CCceEEEeehhcccceeecccCcchHH
Confidence 455666655555555666666543 44444444433 3323344433333 567777776532222111111111111
Q ss_pred HHHH------------HHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecc
Q 043859 90 SVIM------------REIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGT 140 (484)
Q Consensus 90 ~~~~------------~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~ 140 (484)
.... ....+.+.++++.. +.|++++. ...+|+..+|-.++..+.
T Consensus 165 TkavKkriYlgs~~~ns~~~e~l~~v~aq~--~I~v~~~e-----sp~~AEtrnit~YVHpPl 220 (431)
T COG4408 165 TKAVKKRIYLGSQHGNSGSAEMLTAVLAQH--GIDVEPCE-----SPLAAETRNITLYVHPPL 220 (431)
T ss_pred HHHHhHheeeccCCCCChHHHHHHHHHHhc--CCceEEcC-----ChhhhhhcccceeecCcc
Confidence 1111 12345688888988 99999988 456799999998875443
No 390
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=31.33 E-value=1.1e+02 Score=26.18 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=22.1
Q ss_pred ccccccccCch------hHHHHHhcCCceeecc
Q 043859 363 VGGFLSHCGWN------STLESITNGVPMIVWP 389 (484)
Q Consensus 363 ~~~~ItHgG~g------s~~eal~~GvP~v~~P 389 (484)
.+++++|.|-| .+.+|...++|||++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34788887744 7889999999999996
No 391
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=31.32 E-value=4e+02 Score=27.33 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=23.0
Q ss_pred HHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEE
Q 043859 102 SAISALKTTPTALIVDLFGTESLAIAEELQIPKYV 136 (484)
Q Consensus 102 ~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~ 136 (484)
+.+++. +||++|.... ...+|+++|||++-
T Consensus 391 ~~~~~~--~pDliig~s~---~~~~A~klgiP~vd 420 (461)
T TIGR01860 391 EVLDLI--KPDVIFTGPR---VGELVKKLHIPYVN 420 (461)
T ss_pred HHHHhc--CCCEEEeCCc---chhhHhhcCCCEEe
Confidence 345667 9999998853 35589999999873
No 392
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=31.28 E-value=55 Score=28.58 Aligned_cols=41 Identities=17% Similarity=0.322 Sum_probs=30.0
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhH
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAA 51 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~ 51 (484)
||++.-.++. ...-...+.+.|+++ |++|.++.++.-...+
T Consensus 2 ~I~lgvtGs~-~a~~~~~ll~~L~~~-g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 2 KILLAVTGSI-AAYKAADLTSQLTKL-GYDVTVLMTQAATQFI 42 (177)
T ss_pred EEEEEEcCHH-HHHHHHHHHHHHHHC-CCEEEEEEChHHHhhc
Confidence 5555555544 455667999999999 9999999998644433
No 393
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=31.21 E-value=3e+02 Score=29.19 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=22.8
Q ss_pred CccccccccCch------hHHHHHhcCCceeecc
Q 043859 362 SVGGFLSHCGWN------STLESITNGVPMIVWP 389 (484)
Q Consensus 362 ~~~~~ItHgG~g------s~~eal~~GvP~v~~P 389 (484)
..+++++|.|-| .+.+|...++|||++-
T Consensus 68 ~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 345789998844 7788999999999996
No 394
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=31.14 E-value=37 Score=28.83 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=25.3
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
||.++-.+..|+ ++|..|..+ ||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHC-TEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHc-CCEEEEEeccH
Confidence 455666665554 799999999 99999999985
No 395
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=30.76 E-value=5.1e+02 Score=25.21 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=37.8
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCch
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTS 49 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 49 (484)
++..|.|...|+.|--.=.-.|+..|.++ |++|.+++.++...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~-g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQ-GHKVAVLAVDPSST 97 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeCCCcc
Confidence 45678888899999999999999999999 99999999987554
No 396
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=30.73 E-value=4.3e+02 Score=25.84 Aligned_cols=112 Identities=15% Similarity=0.037 Sum_probs=54.0
Q ss_pred CCeEEEEcCCCc-cChHHHHHHHHHHHhcCC--CeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCc
Q 043859 7 KPHAVLLASPGV-GHVIPVLELGKRLVTLYN--FQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDA 83 (484)
Q Consensus 7 ~~~il~~~~p~~-GHv~P~l~La~~L~~r~G--h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 83 (484)
+||+...|..-. |. .-+-.|.+.+.+. | .++.+++.+...+...+.+.+.......+.....+ . ..
T Consensus 4 ~~~~~~~p~~i~~G~-g~l~~l~~~l~~~-~~~~~~livtd~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~---~t- 72 (350)
T PRK00843 4 KSHWIQLPRDVVVGH-GVLDDIGDVCSDL-KLTGRALIVTGPTTKKIAGDRVEENLEDAGDVEVVIVD-----E---AT- 72 (350)
T ss_pred CceEEeCCCeEEECC-CHHHHHHHHHHHh-CCCCeEEEEECCcHHHHHHHHHHHHHHhcCCeeEEeCC-----C---CC-
Confidence 566666655422 32 3345667777765 5 47777777655443222222222100012222111 0 00
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCc--hh-hHHHHHHHhCCCeEEEeccc
Q 043859 84 AVVTIISVIMREIKPAFRSAISALKTTPTALIVDLF--GT-ESLAIAEELQIPKYVYVGTN 141 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~--~~-~~~~~A~~lgIP~v~~~~~~ 141 (484)
.. ....+.+.+++. ++|+||.=.- .. .+..+|...|+|+|.+-|+.
T Consensus 73 ------~~----~v~~~~~~~~~~--~~d~IIaiGGGsv~D~ak~vA~~rgip~I~IPTT~ 121 (350)
T PRK00843 73 ------ME----EVEKVEEKAKDV--NAGFLIGVGGGKVIDVAKLAAYRLGIPFISVPTAA 121 (350)
T ss_pred ------HH----HHHHHHHHhhcc--CCCEEEEeCCchHHHHHHHHHHhcCCCEEEeCCCc
Confidence 01 122233334444 7899984321 11 23346777899999877653
No 397
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=30.67 E-value=4.1e+02 Score=29.19 Aligned_cols=39 Identities=5% Similarity=-0.025 Sum_probs=30.7
Q ss_pred EEEEcC-CCccChHHHHHHHHHHHhcCCCeEEEEecCCCch
Q 043859 10 AVLLAS-PGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTS 49 (484)
Q Consensus 10 il~~~~-p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 49 (484)
|+|.+. |+.|--.-...||..|++. |++|.++=.+....
T Consensus 549 i~vts~~~G~GKTt~a~nLA~~lA~~-g~rvLlID~D~~~~ 588 (754)
T TIGR01005 549 VETQRPRPVLGKSDIEANAAALIASG-GKRALLIDADGRKA 588 (754)
T ss_pred EEeecCCCCCChhHHHHHHHHHHHhC-CCeEEEEeCCCCch
Confidence 433333 6999999999999999998 99999887665433
No 398
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=30.57 E-value=1.5e+02 Score=28.88 Aligned_cols=98 Identities=6% Similarity=0.020 Sum_probs=58.0
Q ss_pred CeEEEEecCCC---CCCCHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCc
Q 043859 269 ESVLYVSFGSG---GTLTYEQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIG 345 (484)
Q Consensus 269 ~~~v~vs~Gs~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 345 (484)
++.|.+..|+. -..+.+.+.++++.|...+.++++.-++... . ...-+.+.+.....+
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~------------------e-~~~~~~i~~~~~~~~ 243 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKD------------------D-LACVNEIAQGCQTPP 243 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChH------------------H-HHHHHHHHHhcCCCc
Confidence 45777888875 3456777888998887667777665321110 0 000011221111111
Q ss_pred -eEecC--Ccch-hhhccCCCccccccccCchhHHHHHhcCCceeec
Q 043859 346 -VVVPQ--WAPQ-IDILSHPSVGGFLSHCGWNSTLESITNGVPMIVW 388 (484)
Q Consensus 346 -v~v~~--~ipq-~~vL~~~~~~~~ItHgG~gs~~eal~~GvP~v~~ 388 (484)
+.+.. -+.+ .+++++++ ++|+.- .|-++=|.+.|+|.|++
T Consensus 244 ~~~l~g~~sL~el~ali~~a~--l~v~nD-SGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 244 VTALAGKTTFPELGALIDHAQ--LFIGVD-SAPAHIAAAVNTPLICL 287 (352)
T ss_pred cccccCCCCHHHHHHHHHhCC--EEEecC-CHHHHHHHHcCCCEEEE
Confidence 11222 2344 56999999 799876 45778888999999987
No 399
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=30.42 E-value=3.1e+02 Score=22.50 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=35.4
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchh
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSA 50 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 50 (484)
++++...++.|--.=+..++..+... |..|.|+..+.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~~~~~ 41 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEEEIEE 41 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCcchHH
Confidence 46788889999999999999999998 899999999876543
No 400
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=30.38 E-value=3.8e+02 Score=27.09 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 99 AFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
++.+++++. +||++|.-. .......|.++|+|++.+.
T Consensus 364 e~~~~l~~~--~pDl~i~~~-~~~~~~~~~~~gip~~~~~ 400 (426)
T cd01972 364 QFYNLLKRV--KPDFIIFRH-GGLFPDATVYLGIPVVPLN 400 (426)
T ss_pred HHHHHHHHh--CCCEEEEcC-CCccHHHHHhcCCCEEecc
Confidence 566778888 999999643 2233455688999988653
No 401
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=30.35 E-value=60 Score=32.82 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 99 AFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
++.+++++. +||++|.... ...+|+++|||++.+.
T Consensus 360 e~~~~i~~~--~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 360 ELEEFVKRL--KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHh--CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 455777777 9999999864 5568999999997654
No 402
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.19 E-value=80 Score=30.10 Aligned_cols=58 Identities=9% Similarity=0.010 Sum_probs=39.1
Q ss_pred hhccCCCccccccccCchhHHHHHh----cCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHH
Q 043859 356 DILSHPSVGGFLSHCGWNSTLESIT----NGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRR 431 (484)
Q Consensus 356 ~vL~~~~~~~~ItHgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~ 431 (484)
++...++ ++|+=||-||++.+.. +++|++.+-.. . +|-. ..++++++.+++.+
T Consensus 59 ~~~~~~d--~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G------------~--lGFl-------~~~~~~~~~~~l~~ 115 (292)
T PRK03378 59 EIGQQAD--LAIVVGGDGNMLGAARVLARYDIKVIGINRG------------N--LGFL-------TDLDPDNALQQLSD 115 (292)
T ss_pred hcCCCCC--EEEEECCcHHHHHHHHHhcCCCCeEEEEECC------------C--CCcc-------cccCHHHHHHHHHH
Confidence 3334566 8999999999999974 36777766321 1 1211 24567888899999
Q ss_pred Hhccc
Q 043859 432 ILVDE 436 (484)
Q Consensus 432 vl~~~ 436 (484)
++++.
T Consensus 116 i~~g~ 120 (292)
T PRK03378 116 VLEGH 120 (292)
T ss_pred HHcCC
Confidence 88753
No 403
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=30.19 E-value=5.1e+02 Score=25.65 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 99 AFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
.+.+.+++. +||++|.+.. ....|+++|||++.+.
T Consensus 339 ~~~~~~~~~--~pdl~ig~~~---~~~~~~~~~ip~~~~~ 373 (399)
T cd00316 339 ELEELIREL--KPDLIIGGSK---GRYIAKKLGIPLVRIG 373 (399)
T ss_pred HHHHHHhhc--CCCEEEECCc---HHHHHHHhCCCEEEcC
Confidence 455566777 9999999953 4567888999987654
No 404
>PRK11914 diacylglycerol kinase; Reviewed
Probab=30.17 E-value=1.3e+02 Score=28.73 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=22.7
Q ss_pred ccccccCchhHHHHH----hcCCceeeccc
Q 043859 365 GFLSHCGWNSTLESI----TNGVPMIVWPL 390 (484)
Q Consensus 365 ~~ItHgG~gs~~eal----~~GvP~v~~P~ 390 (484)
++|.-||-||++|++ ..++|+-++|.
T Consensus 67 ~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 799999999999987 34799999996
No 405
>PRK13604 luxD acyl transferase; Provisional
Probab=30.08 E-value=1.1e+02 Score=29.28 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEE
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIF 42 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~ 42 (484)
++...++++.+..++-.-+..+|+.|.++ |..|.-+
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~-G~~vLrf 70 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSN-GFHVIRY 70 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHC-CCEEEEe
Confidence 45577888888888877799999999999 9988755
No 406
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=29.96 E-value=26 Score=31.80 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=58.7
Q ss_pred CCCeEEEEcCCCccChHHHHHHHH-HHHhcCCCeEEEEecCCCchhHHHHHhhhccC-------CCceEEEecCCCCCCC
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGK-RLVTLYNFQVTIFVVASQTSAAESKILQSAMS-------SKLCHVIEIPAPDISG 77 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~-~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~p~~~~~~ 77 (484)
+.--+++...|+.|-..=.++++. .+.+. |..|.|++.+...+.+.+.. ...+. ...+.+..........
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee~~~~l~~~~-~s~g~d~~~~~~~g~l~~~d~~~~~~~~ 95 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEEPPEELIENM-KSFGWDLEEYEDSGKLKIIDAFPERIGW 95 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS-HHHHHHHH-HTTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecCCHHHHHHHH-HHcCCcHHHHhhcCCEEEEecccccccc
Confidence 344677788889999998888775 55554 79999999998776655543 23331 0124444333211100
Q ss_pred CCCCCchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchh
Q 043859 78 LVDPDAAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGT 121 (484)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~ 121 (484)
.. .........+.+.+++. +++.||.|.+..
T Consensus 96 ---~~--------~~~~~l~~~i~~~i~~~--~~~~vVIDsls~ 126 (226)
T PF06745_consen 96 ---SP--------NDLEELLSKIREAIEEL--KPDRVVIDSLSA 126 (226)
T ss_dssp ---TS--------CCHHHHHHHHHHHHHHH--TSSEEEEETHHH
T ss_pred ---cc--------cCHHHHHHHHHHHHHhc--CCCEEEEECHHH
Confidence 00 11222334566778888 899999997654
No 407
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=29.85 E-value=2.5e+02 Score=26.13 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=35.8
Q ss_pred CCCCeEEEEcC-CCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 5 SSKPHAVLLAS-PGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 5 ~~~~~il~~~~-p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
+..+|-.|+-. ++-|-..=...||-.|..- +|.|.++++.+..
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~-r~~vLiISTDPAH 59 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKV-RESVLIISTDPAH 59 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhcc-CCceEEeecCccc
Confidence 44566777766 6899999999999999998 8999999998754
No 408
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=29.58 E-value=5.6e+02 Score=25.32 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=27.8
Q ss_pred CCCeEEEEc-CCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 6 SKPHAVLLA-SPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 6 ~~~~il~~~-~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
..++|+++- .+..|. .+|+.|.++ ||+|+.+....
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~-G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLS-GYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHC-CCeEEEeCCCc
Confidence 347899886 777775 589999999 99999888643
No 409
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.54 E-value=4.7e+02 Score=26.09 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=35.4
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHh----cCCCeEEEEecCCCchh
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVT----LYNFQVTIFVVASQTSA 50 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~----r~Gh~Vt~~~~~~~~~~ 50 (484)
+..|+|+-..|.|-..-...||..+.. . |..|.+++...++..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~-g~~V~lit~Dt~R~a 220 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDK-SLNIKIITIDNYRIG 220 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccC-CCeEEEEeccCccHH
Confidence 446777777799999999999998873 5 799999999987644
No 410
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=29.54 E-value=1.8e+02 Score=19.53 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHH-HHHHHHHH
Q 043859 421 GREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYS-SLARLAKE 473 (484)
Q Consensus 421 ~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~-~~~~~~~~ 473 (484)
|.++|+++|.++|.+.+.+... .+.+++.+.+.+ +-.=+++. .+++++.+
T Consensus 1 td~~i~~~i~~iL~~~dl~~vT--~k~vr~~Le~~~-~~dL~~~K~~I~~~I~~ 51 (54)
T PF08766_consen 1 TDEEIREAIREILREADLDTVT--KKQVREQLEERF-GVDLSSRKKFIKELIDE 51 (54)
T ss_dssp -HHHHHHHHHHHHTTS-GGG----HHHHHHHHHHH--SS--SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHhHhh--HHHHHHHHHHHH-CCCcHHHHHHHHHHHHH
Confidence 4577888999998765533232 355555555545 33333332 45555543
No 411
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.33 E-value=1.1e+02 Score=29.15 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=38.6
Q ss_pred cCCCccccccccCchhHHHHHh----cCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhc
Q 043859 359 SHPSVGGFLSHCGWNSTLESIT----NGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILV 434 (484)
Q Consensus 359 ~~~~~~~~ItHgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~ 434 (484)
..++ ++|+=||-||+++++. .++|++.+... + +|-. -..+.+++.++|.+++.
T Consensus 61 ~~~d--~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G------------~--lGFl-------~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 61 EVCD--LVIVVGGDGSLLGAARALARHNVPVLGINRG------------R--LGFL-------TDIRPDELEFKLAEVLD 117 (295)
T ss_pred cCCC--EEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC------------c--cccc-------ccCCHHHHHHHHHHHHc
Confidence 3456 8999999999999975 36677777531 1 2211 34577889999999987
Q ss_pred cc
Q 043859 435 DE 436 (484)
Q Consensus 435 ~~ 436 (484)
+.
T Consensus 118 g~ 119 (295)
T PRK01231 118 GH 119 (295)
T ss_pred CC
Confidence 53
No 412
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=29.33 E-value=9.2 Score=20.92 Aligned_cols=17 Identities=24% Similarity=0.688 Sum_probs=13.5
Q ss_pred CchhHHHHHhcCCceee
Q 043859 371 GWNSTLESITNGVPMIV 387 (484)
Q Consensus 371 G~gs~~eal~~GvP~v~ 387 (484)
|.|+++-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67889999999988765
No 413
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=29.32 E-value=90 Score=27.80 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=26.6
Q ss_pred CCCCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEE
Q 043859 3 SSSSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIF 42 (484)
Q Consensus 3 ~~~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~ 42 (484)
...+.++|+++-++..| ..+|+.|.+. ||+|++.
T Consensus 24 ~~l~gk~v~I~G~G~vG-----~~~A~~L~~~-G~~Vvv~ 57 (200)
T cd01075 24 DSLEGKTVAVQGLGKVG-----YKLAEHLLEE-GAKLIVA 57 (200)
T ss_pred CCCCCCEEEEECCCHHH-----HHHHHHHHHC-CCEEEEE
Confidence 34567899998887544 5789999999 9999944
No 414
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=29.30 E-value=1.4e+02 Score=31.50 Aligned_cols=90 Identities=10% Similarity=-0.011 Sum_probs=0.0
Q ss_pred ecCCCCCCCH-HHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhh-cCCceEecC--
Q 043859 275 SFGSGGTLTY-EQITELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRT-LDIGVVVPQ-- 350 (484)
Q Consensus 275 s~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~v~v~~-- 350 (484)
|.||...... ...+.+++.|+..|.+.+.-+.+... ..+.+.+ .+.+++...
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~------------------------~~l~dal~~~~~i~~i~~~ 58 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAI------------------------LPLYDALSQSTQIRHILAR 58 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCccc------------------------HHHHHHHhccCCceEEEec
Q ss_pred ------CcchhhhccCCCccccccccC------chhHHHHHhcCCceeec
Q 043859 351 ------WAPQIDILSHPSVGGFLSHCG------WNSTLESITNGVPMIVW 388 (484)
Q Consensus 351 ------~ipq~~vL~~~~~~~~ItHgG------~gs~~eal~~GvP~v~~ 388 (484)
++-...-...-..+++++|.| .+.+.+|.+.++|||++
T Consensus 59 hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 108 (564)
T PRK08155 59 HEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCI 108 (564)
T ss_pred cHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEE
No 415
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=29.29 E-value=58 Score=28.53 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=29.2
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchh
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSA 50 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 50 (484)
||++.-.++.|.+. ...+.+.|+++ |++|.++.++.-...
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~-g~~V~vv~T~~A~~f 40 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEA-GVEVHLVISDWAKET 40 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHC-CCEEEEEECccHHHH
Confidence 34555555555554 48899999999 999999999975443
No 416
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=29.28 E-value=51 Score=28.93 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=25.0
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
|||.++.- .|++- -.|+++...| ||+||-++-.+
T Consensus 1 mKIaiIgA--sG~~G--s~i~~EA~~R-GHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGA--SGKAG--SRILKEALKR-GHEVTAIVRNA 34 (211)
T ss_pred CeEEEEec--CchhH--HHHHHHHHhC-CCeeEEEEeCh
Confidence 67777654 44443 3578889999 99999999875
No 417
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=29.22 E-value=1e+02 Score=19.94 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHhcc-cchHHHHHHHHHHH
Q 043859 421 GREEIKTMVRRILVD-EEGYEIRAKVKELQ 449 (484)
Q Consensus 421 ~~~~l~~~i~~vl~~-~~~~~~~~~a~~l~ 449 (484)
++++|..||..|..+ -+ +++.|+++.
T Consensus 1 tee~l~~Ai~~v~~g~~S---~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMS---IRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTSS----HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCCCC---HHHHHHHHC
Confidence 468899999999976 44 777776653
No 418
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=29.19 E-value=80 Score=28.21 Aligned_cols=38 Identities=24% Similarity=0.141 Sum_probs=23.5
Q ss_pred CeEEEEcCCCccC--hHHHHHHHHHHHhcC--CCeEEEEecC
Q 043859 8 PHAVLLASPGVGH--VIPVLELGKRLVTLY--NFQVTIFVVA 45 (484)
Q Consensus 8 ~~il~~~~p~~GH--v~P~l~La~~L~~r~--Gh~Vt~~~~~ 45 (484)
|||++..|+-.|+ .||...++++|.++. |++|....-+
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~~~~~~~~v~~~~lP 42 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPGELIGGAEVHTRELP 42 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTTSEETTEEEEEEEE-
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCCCcCCCceEEEEEec
Confidence 7899888864443 799999999997431 4444444333
No 419
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=29.04 E-value=1.4e+02 Score=26.30 Aligned_cols=43 Identities=16% Similarity=0.047 Sum_probs=28.9
Q ss_pred HHhhHHHHHHHHhcCCCCeEEEeCC--chhhHHHHHHHhCCCeEEEe
Q 043859 94 REIKPAFRSAISALKTTPTALIVDL--FGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 94 ~~~~~~l~~~l~~~~~~pD~VI~D~--~~~~~~~~A~~lgIP~v~~~ 138 (484)
+.....+.+.+++. ++|+|+.=. -.+.+..+|..+|+|++.+-
T Consensus 36 ~~i~~~la~~~~~~--~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 36 NEIGKEFARRFKDE--GITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred HHHHHHHHHHhccC--CCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 33444444555555 899998532 34556679999999998765
No 420
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=28.85 E-value=2.5e+02 Score=29.76 Aligned_cols=116 Identities=15% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCcEEEEEeCCCCCCCCCCcccCCCCCCCCCccCCCchhHHHhhcCCceEecC--------Ccchhhhcc
Q 043859 288 TELAWGLELSQQRFIWVVRLPNETTGDGSFFTAGSGAGDDDLSSLLPDGFLSRTLDIGVVVPQ--------WAPQIDILS 359 (484)
Q Consensus 288 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~v~~--------~ipq~~vL~ 359 (484)
+.+++.|+..|.+.++.+.+... ..+.+.+...++.... ++-...-..
T Consensus 5 ~~l~~~L~~~Gv~~vFg~pG~~~------------------------~~l~~al~~~~i~~i~~~hE~~A~~~Adgyar~ 60 (586)
T PRK06276 5 EAIIKALEAEGVKIIFGYPGGAL------------------------LPFYDALYDSDLIHILTRHEQAAAHAADGYARA 60 (586)
T ss_pred HHHHHHHHHcCCCEEEECCCcch------------------------HHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHH
Q ss_pred CCCccccccccC------chhHHHHHhcCCceeec---------ccccccchhHHHHHhhhcceEEeeecCCCCccCHHH
Q 043859 360 HPSVGGFLSHCG------WNSTLESITNGVPMIVW---------PLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREE 424 (484)
Q Consensus 360 ~~~~~~~ItHgG------~gs~~eal~~GvP~v~~---------P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~ 424 (484)
....+++++|.| .+.+.+|.+.++|+|++ ....-|..+-..+.+..-..-. .-.++++
T Consensus 61 tg~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~-------~v~~~~~ 133 (586)
T PRK06276 61 SGKVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITKHNF-------QIKKPEE 133 (586)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcceEE-------ecCCHHH
Q ss_pred HHHHHHHHhc
Q 043859 425 IKTMVRRILV 434 (484)
Q Consensus 425 l~~~i~~vl~ 434 (484)
+.+.|.+.+.
T Consensus 134 i~~~i~~A~~ 143 (586)
T PRK06276 134 IPEIFRAAFE 143 (586)
T ss_pred HHHHHHHHHH
No 421
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=28.78 E-value=1.5e+02 Score=30.03 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=38.1
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchh
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSA 50 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 50 (484)
++..|+|+..++.|-..-...||..|.+. |+.|.+++.+.++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~kV~lV~~D~~R~a 137 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GLKVGLVAADTYRPA 137 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEecCCCCCHH
Confidence 34567778788999999999999999998 999999999987654
No 422
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=28.76 E-value=58 Score=29.67 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 20 HVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 20 Hv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
|+..|...|++|+++ |++|+++....
T Consensus 47 ~~saMRhfa~~L~~~-G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAK-GFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHT-T--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEeCCC
Confidence 678899999999999 99999999884
No 423
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=28.68 E-value=1.7e+02 Score=27.60 Aligned_cols=26 Identities=19% Similarity=0.412 Sum_probs=19.7
Q ss_pred ccccccCchhHHHHHhc-----CCcee-eccc
Q 043859 365 GFLSHCGWNSTLESITN-----GVPMI-VWPL 390 (484)
Q Consensus 365 ~~ItHgG~gs~~eal~~-----GvP~v-~~P~ 390 (484)
++|.-||-||++|++.. ..|.+ ++|.
T Consensus 60 ~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 60 TVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 79999999999996643 34444 5995
No 424
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=28.62 E-value=3.4e+02 Score=28.32 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCCeEEE----eCCchhhHHHHHHHhCCCeEEEeccc
Q 043859 98 PAFRSAISALKTTPTALI----VDLFGTESLAIAEELQIPKYVYVGTN 141 (484)
Q Consensus 98 ~~l~~~l~~~~~~pD~VI----~D~~~~~~~~~A~~lgIP~v~~~~~~ 141 (484)
..++..++.. .+|.+| ||-..++...+|-++|||.|.+...+
T Consensus 79 dsiE~~~~~~--~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGp 124 (535)
T TIGR00110 79 DSVETMVNAH--RFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGP 124 (535)
T ss_pred HHHHHHHhcC--CcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 3455556666 899887 89888888889999999999887543
No 425
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=28.51 E-value=88 Score=32.64 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 99 AFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
++.+.+++. +||+||.+. ....+|+++|||++.+.
T Consensus 353 el~~~i~~~--~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 353 EVEDAIAEA--APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHhc--CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 555666667 999999875 24568999999988764
No 426
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=28.45 E-value=4.5e+02 Score=23.84 Aligned_cols=90 Identities=13% Similarity=0.195 Sum_probs=52.4
Q ss_pred CCeEEEEecCCCchhHHHHHhhhccCCCceE-EEecCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEE
Q 043859 36 NFQVTIFVVASQTSAAESKILQSAMSSKLCH-VIEIPAPDISGLVDPDAAVVTIISVIMREIKPAFRSAISALKTTPTAL 114 (484)
Q Consensus 36 Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~V 114 (484)
|-++.++|+.+-...+...+++.++.+.... ....+...+ .+ ....+ ...+......++.+++. +.|+|
T Consensus 109 grrfsViTtt~rs~~il~~lv~~~g~s~~~~~vrstdl~vL-~l-~~~~~------~~~~~l~~~~~~a~~ed--gAeaI 178 (230)
T COG4126 109 GRRFSVITTTERSRPILEELVRSYGLSRHCRSVRSTDLPVL-AL-EGPPE------EAEALLVIEAAEALKED--GAEAI 178 (230)
T ss_pred cceEEEEecCcccHHHHHHHHHhcCccccccceeeCCCCcc-cc-cCChH------HHHHHHHHHHHHHhhhc--CCCEE
Confidence 7789999988777777777888887443322 222222111 11 11111 12222334556666666 99999
Q ss_pred EeCCchhhHH--HHHHHhCCCeE
Q 043859 115 IVDLFGTESL--AIAEELQIPKY 135 (484)
Q Consensus 115 I~D~~~~~~~--~~A~~lgIP~v 135 (484)
+....-+... .+.+.+|||++
T Consensus 179 iLGCAGms~la~~Lq~~~gvPVI 201 (230)
T COG4126 179 ILGCAGMSDLADQLQKAFGVPVI 201 (230)
T ss_pred EEcCccHHHHHHHHHHHhCCCcc
Confidence 9775444333 58888999966
No 427
>PLN02470 acetolactate synthase
Probab=28.33 E-value=4.2e+02 Score=28.05 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=34.3
Q ss_pred ccccccCchhHHHH--HhcCCceee----ccccc--ccchhHHHHHhhhcc-eEEeeecCCCCccCHHHHHHHHHHHhc
Q 043859 365 GFLSHCGWNSTLES--ITNGVPMIV----WPLYS--EQRMNATILTEELGV-AIRSKVLPSKGVVGREEIKTMVRRILV 434 (484)
Q Consensus 365 ~~ItHgG~gs~~ea--l~~GvP~v~----~P~~~--DQ~~na~rv~~~~G~-g~~l~~~~~~~~~~~~~l~~~i~~vl~ 434 (484)
+++..||+|.+.+. ..++.+... .|... ..++.++. ++..|+ |.+ .-+.++|.+++++.++
T Consensus 476 vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i-A~a~G~~~~~--------v~~~~el~~al~~a~~ 545 (585)
T PLN02470 476 MVLNNQHLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKF-AEGCKIPAAR--------VTRKSDLREAIQKMLD 545 (585)
T ss_pred EEEeCCcchHHHHHHHHHhCCceeeeecCccccccCCCCCHHHH-HHHCCCeEEE--------ECCHHHHHHHHHHHHh
Confidence 69999999877543 233332111 11110 01444444 466665 233 3478999999998874
No 428
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=28.30 E-value=76 Score=26.11 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=22.6
Q ss_pred hhhccCCCccccccccCchhHHHHHh---------cCC-ceeecc
Q 043859 355 IDILSHPSVGGFLSHCGWNSTLESIT---------NGV-PMIVWP 389 (484)
Q Consensus 355 ~~vL~~~~~~~~ItHgG~gs~~eal~---------~Gv-P~v~~P 389 (484)
..+|-..+...++.-||.||.-|... +.+ |++.+=
T Consensus 47 k~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~ 91 (133)
T PF03641_consen 47 KEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLN 91 (133)
T ss_dssp HHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEE
T ss_pred HHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeC
Confidence 34444334447888999999988743 234 988876
No 429
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=28.27 E-value=56 Score=31.27 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
.|||+|+..|..+ ...-++|.+. ||+|.-+.+.+.+
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~~-~~eivaV~Tqpdk 36 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIEA-GHEIVAVVTQPDK 36 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHhC-CCceEEEEeCCCC
Confidence 4789998887543 4556777778 8999988887654
No 430
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=28.27 E-value=87 Score=32.60 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 99 AFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
.+.+.+++. +||+||.+. ....+|+++|||++.+.
T Consensus 355 ei~~~i~~~--~pdliiG~~---~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 355 EVADAIAAL--EPELVLGTQ---MERHSAKRLDIPCGVIS 389 (511)
T ss_pred HHHHHHHhc--CCCEEEECh---HHHHHHHHcCCCEEEec
Confidence 445556666 899999995 34567899999998765
No 431
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=28.22 E-value=70 Score=30.37 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=25.9
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecC
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVA 45 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~ 45 (484)
|||+++-.+..| ..+|..|.+. ||+|+++...
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhC-CCeEEEEECC
Confidence 678888777666 5678889998 9999999874
No 432
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=28.22 E-value=1e+02 Score=27.63 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=28.8
Q ss_pred hHHHHHHHHhcCCCCeEEEeCCchh-------hHHHHHHHhCCCeEEEec
Q 043859 97 KPAFRSAISALKTTPTALIVDLFGT-------ESLAIAEELQIPKYVYVG 139 (484)
Q Consensus 97 ~~~l~~~l~~~~~~pD~VI~D~~~~-------~~~~~A~~lgIP~v~~~~ 139 (484)
.+.+.++++++..+||+|++|.+-. .+..++-.+++|.|-+.=
T Consensus 76 ~P~~l~~l~~l~~~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVAK 125 (206)
T PF04493_consen 76 LPCILEALEKLKNKPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVAK 125 (206)
T ss_dssp HHHHHHHHHTSSS--SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEES
T ss_pred HHHHHHHHHHhcccCCEEEEeCceeecCCCcChhheeeeccCCCEEEEeC
Confidence 4677788888877899999996432 233467778999998763
No 433
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=28.18 E-value=1.3e+02 Score=24.02 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=33.9
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
||++..-++.|-..-...+++.|.++ |.+|.++-..+
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~-g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEK-GKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCc
Confidence 57888899999999999999999999 99999998886
No 434
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=27.80 E-value=96 Score=31.42 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 99 AFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
++.+++++. +||++|.+.. ...+|+++|+|++.+.
T Consensus 361 e~~~~i~~~--~pdliig~~~---~~~~a~~~gip~~~~~ 395 (430)
T cd01981 361 EVGDMIART--EPELIFGTQM---ERHIGKRLDIPCAVIS 395 (430)
T ss_pred HHHHHHHhh--CCCEEEecch---hhHHHHHcCCCEEEEe
Confidence 455666666 9999999952 4456899999998765
No 435
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.76 E-value=87 Score=30.02 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 6 SKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 6 ~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
.+|+|.|+-.+..| .++|+.|.+. ||+|++.....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~-G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASAN-GHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHC-CCEEEEEeCCC
Confidence 46899999777666 4789999999 99999887654
No 436
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=27.74 E-value=1.8e+02 Score=25.40 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=25.2
Q ss_pred hhhhccCCCccccccccCchhHHHHHh---------cCCceeecc
Q 043859 354 QIDILSHPSVGGFLSHCGWNSTLESIT---------NGVPMIVWP 389 (484)
Q Consensus 354 q~~vL~~~~~~~~ItHgG~gs~~eal~---------~GvP~v~~P 389 (484)
...+|-..+...++--||.||+-|.+. +.+|++++=
T Consensus 89 Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 89 RKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 344555444447778899999988743 589998874
No 437
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=27.63 E-value=4.3e+02 Score=28.75 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=59.8
Q ss_pred eEEEEcC-CCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHH
Q 043859 9 HAVLLAS-PGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVT 87 (484)
Q Consensus 9 ~il~~~~-p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 87 (484)
.|++.+. +..|-..=.+.|++.|.++ |.+|.|+=+-... + +.. . ....
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~-G~~Vg~fKPi~~~-----------p----~~~--------~-------~~~~ 52 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERK-GVKVGFFKPIAQP-----------P----LTM--------S-------EVEA 52 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEeCCcccC-----------C----CCH--------H-------HHHH
Confidence 4555544 5789999999999999999 9999988643210 1 000 0 0000
Q ss_pred HHHH-HHHHhhHHHHHHHHhcCCCCeEEEeCCchh---------hHHHHHHHhCCCeEEEeccc
Q 043859 88 IISV-IMREIKPAFRSAISALKTTPTALIVDLFGT---------ESLAIAEELQIPKYVYVGTN 141 (484)
Q Consensus 88 ~~~~-~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~---------~~~~~A~~lgIP~v~~~~~~ 141 (484)
.+.. ......+.+.+.++.+..+.|+||.|...+ ....+|+.++.|++.+....
T Consensus 53 ~~~~~~~~~~~~~I~~~~~~l~~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 53 LLASGQLDELLEEIVARYHALAKDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred HHhccCChHHHHHHHHHHHHhccCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 0000 000111233333444445889999875432 23568999999999887643
No 438
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=27.61 E-value=1.5e+02 Score=28.07 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHH
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAE 52 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~ 52 (484)
.++|+|+-.+..|. .+|+.|+++ ||.|.+...+...+...
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~-g~~v~i~g~d~~~~~~~ 42 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEA-GLVVRIIGRDRSAATLK 42 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHc-CCeEEEEeecCcHHHHH
Confidence 57899999888886 479999999 99999999887765433
No 439
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=27.55 E-value=1.5e+02 Score=28.15 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCch---hH-HHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHhh
Q 043859 22 IPVLELGKRLVTLYNFQVTIFVVASQTS---AA-ESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIK 97 (484)
Q Consensus 22 ~P~l~La~~L~~r~Gh~Vt~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (484)
...+.|++.|.+. |++|..+..+.... .+ .....+..- .+.+.+-+|-+...+. ..... .+...-.
T Consensus 11 ~r~~~~~~~l~~~-g~~v~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~p~~~~~~~----~~i~~---~~~~~~~ 80 (287)
T TIGR02853 11 ARQLELIRKLEEL-DAKISLIGFDQLEDGFTGAVKCELLELDL--TTLDVVILPVPGTSHD----GKVAT---VFSNEKV 80 (287)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeccccccccccceeecchhhhh--ccCCEEEECCccccCC----ceEec---ccccCCc
Confidence 4678999999999 99999998873211 00 001111100 1244444443322111 00000 0001111
Q ss_pred HHHHHHHHhcCCCCeEEEeCCchhhHHH-HHHHhCCCeEEE
Q 043859 98 PAFRSAISALKTTPTALIVDLFGTESLA-IAEELQIPKYVY 137 (484)
Q Consensus 98 ~~l~~~l~~~~~~pD~VI~D~~~~~~~~-~A~~lgIP~v~~ 137 (484)
..-+++++.+ ++-++++-.....-.. +|+..||+++-+
T Consensus 81 ~l~~~~l~~~--~~~~~~~~G~~~~~l~~~a~~~gi~v~~~ 119 (287)
T TIGR02853 81 VLTPELLEST--KGHCTIYVGISNPYLEQLAADAGVKLIEL 119 (287)
T ss_pred cccHHHHHhc--CCCCEEEEecCCHHHHHHHHHCCCeEEEE
Confidence 1114567777 6666666555555554 999999998854
No 440
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=27.55 E-value=5e+02 Score=24.07 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=23.7
Q ss_pred CCeEEE-eCCchh-hHHHHHHHhCCCeEEEecccH
Q 043859 110 TPTALI-VDLFGT-ESLAIAEELQIPKYVYVGTNA 142 (484)
Q Consensus 110 ~pD~VI-~D~~~~-~~~~~A~~lgIP~v~~~~~~~ 142 (484)
.||+|| .|+..- -+..=|.++|||+|.++-+.+
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds 152 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDS 152 (249)
T ss_pred CCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCC
Confidence 677766 676433 445688999999999886554
No 441
>PRK05541 adenylylsulfate kinase; Provisional
Probab=27.41 E-value=1.4e+02 Score=25.64 Aligned_cols=43 Identities=16% Similarity=0.029 Sum_probs=36.6
Q ss_pred CCCCCCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEec
Q 043859 1 MESSSSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVV 44 (484)
Q Consensus 1 m~~~~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~ 44 (484)
|+...+++-|+|.-.++.|--.-.-.|++.|... |..+.++..
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~-~~~~~~~~~ 43 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLK-YSNVIYLDG 43 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEec
Confidence 7888888999999999999999999999999877 777777643
No 442
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.34 E-value=1.1e+02 Score=22.86 Aligned_cols=37 Identities=11% Similarity=-0.118 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCc--cChHHHHHHHHHHHhcCCCeEEEEec
Q 043859 7 KPHAVLLASPGV--GHVIPVLELGKRLVTLYNFQVTIFVV 44 (484)
Q Consensus 7 ~~~il~~~~p~~--GHv~P~l~La~~L~~r~Gh~Vt~~~~ 44 (484)
|-+|+++|.... .+..-...+++.|++. |..|.+-..
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~-g~~v~~d~~ 39 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAA-GVDVLLDDR 39 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHC-CCEEEEECC
Confidence 347888887753 5677889999999999 999987543
No 443
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=26.79 E-value=1.2e+02 Score=29.97 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=45.6
Q ss_pred ccccccCchhHHHHHhc-----------------CCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHH
Q 043859 365 GFLSHCGWNSTLESITN-----------------GVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKT 427 (484)
Q Consensus 365 ~~ItHgG~gs~~eal~~-----------------GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~ 427 (484)
-++|.||..+.+-|+.. +.|.+.++-.. ++-+.+- +.-+|+|++.-+.+++..++.++|.+
T Consensus 106 G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Ka-a~~lGlg~~~I~~~~~~~md~~~L~~ 183 (373)
T PF00282_consen 106 GVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKA-ARILGLGVRKIPTDEDGRMDIEALEK 183 (373)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHH-HHHTTSEEEEE-BBTTSSB-HHHHHH
T ss_pred eeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHh-cceeeeEEEEecCCcchhhhHHHhhh
Confidence 78999998888777633 35677776444 2444333 46789996665455546788899999
Q ss_pred HHHHHhcc
Q 043859 428 MVRRILVD 435 (484)
Q Consensus 428 ~i~~vl~~ 435 (484)
+|.+..++
T Consensus 184 ~l~~~~~~ 191 (373)
T PF00282_consen 184 ALEKDIAN 191 (373)
T ss_dssp HHHHHHHT
T ss_pred hhcccccc
Confidence 98887654
No 444
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.70 E-value=1.1e+02 Score=28.44 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=36.5
Q ss_pred CCCccccccccCchhHHHHHh-cCCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhccc
Q 043859 360 HPSVGGFLSHCGWNSTLESIT-NGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDE 436 (484)
Q Consensus 360 ~~~~~~~ItHgG~gs~~eal~-~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~ 436 (484)
.++ ++|+=||-||++.++. +++|++.+-.. .+|-. -..+.+++.+.+.+++++.
T Consensus 41 ~~d--~vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl-------~~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 41 TAD--LIIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFL-------SSYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCC--EEEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCccc-------cccCHHHHHHHHHHHHcCC
Confidence 445 8999999999999977 46776666311 12222 2456677888888887653
No 445
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=26.66 E-value=5.3e+02 Score=25.72 Aligned_cols=34 Identities=9% Similarity=0.056 Sum_probs=25.2
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
.+|++++.-+ .-.+++++.|.+- |-+|..++++.
T Consensus 276 Gkrv~i~g~~-----~~~~~la~~L~el-Gm~vv~~~t~~ 309 (396)
T cd01979 276 GKSIFFMGDN-----LLEIPLARFLTRC-GMIVVEVGTPY 309 (396)
T ss_pred CCEEEEECCc-----hHHHHHHHHHHHC-CCEEEeeCCCc
Confidence 4577776543 2468889999987 99999887764
No 446
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=26.43 E-value=2.8e+02 Score=28.63 Aligned_cols=92 Identities=17% Similarity=0.132 Sum_probs=60.2
Q ss_pred cCchhHHHHHhcCCceeeccccc------ccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhcccchHHHHH
Q 043859 370 CGWNSTLESITNGVPMIVWPLYS------EQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDEEGYEIRA 443 (484)
Q Consensus 370 gG~gs~~eal~~GvP~v~~P~~~------DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~ 443 (484)
+|+ |=++++++|.+-|+.+..+ |-..++ . ...|.|.... ..++++++.++.+.+.= |+.
T Consensus 381 cGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~-~~~gtGf~f~------~~~~~~l~~al~rA~~~-----y~~ 445 (487)
T COG0297 381 CGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--I-QGVGTGFLFL------QTNPDHLANALRRALVL-----YRA 445 (487)
T ss_pred CcH-HHHHHHHcCCcceEcccCCccceecCccchh--c-cCceeEEEEe------cCCHHHHHHHHHHHHHH-----hhC
Confidence 555 6678999999888888764 333333 2 3557787764 34999999999988853 333
Q ss_pred HHHHHHHHHHHhhhcCCCChHHHHHHHHHHHhhh
Q 043859 444 KVKELQRSAQKAWTRESGSSYSSLARLAKECGMM 477 (484)
Q Consensus 444 ~a~~l~~~~~~a~~~~~g~~~~~~~~~~~~~~~~ 477 (484)
.-..++...+.++ ...-|-.....+.++-.+.+
T Consensus 446 ~~~~w~~~~~~~m-~~d~sw~~sa~~y~~lY~~~ 478 (487)
T COG0297 446 PPLLWRKVQPNAM-GADFSWDLSAKEYVELYKPL 478 (487)
T ss_pred CHHHHHHHHHhhc-ccccCchhHHHHHHHHHHHH
Confidence 3333555555556 55555556666666655554
No 447
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=26.29 E-value=1e+02 Score=31.29 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=33.7
Q ss_pred CCCCCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 2 ESSSSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 2 ~~~~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
.+.+ .|||+++-.+..| +++|+.|+++ |++|++.-..+..
T Consensus 3 ~~~~-~~kv~V~GLG~sG-----~a~a~~L~~~-G~~v~v~D~~~~~ 42 (448)
T COG0771 3 EDFQ-GKKVLVLGLGKSG-----LAAARFLLKL-GAEVTVSDDRPAP 42 (448)
T ss_pred cccc-CCEEEEEeccccc-----HHHHHHHHHC-CCeEEEEcCCCCc
Confidence 3445 7899999999999 9999999999 9999988766544
No 448
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=26.17 E-value=1.7e+02 Score=25.53 Aligned_cols=38 Identities=13% Similarity=-0.068 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCeEEEeCC--chhhHHHHHHHhCCCeEEEe
Q 043859 99 AFRSAISALKTTPTALIVDL--FGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~--~~~~~~~~A~~lgIP~v~~~ 138 (484)
.+.+.++.. ++|.|++=. -.+.+..+|.++|+|+|.+-
T Consensus 44 ~~~~~~~~~--~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 44 ELAERYKDD--GIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred HHHHHhccc--CCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 344444444 799999432 35557789999999988764
No 449
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.11 E-value=1e+02 Score=29.00 Aligned_cols=54 Identities=9% Similarity=0.212 Sum_probs=37.1
Q ss_pred CCCccccccccCchhHHHHHhc-CCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhccc
Q 043859 360 HPSVGGFLSHCGWNSTLESITN-GVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILVDE 436 (484)
Q Consensus 360 ~~~~~~~ItHgG~gs~~eal~~-GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~~~ 436 (484)
.++ ++|+=||-||++.+... .+|++.+-. -+ +|-. -..+.+++.+++++++++.
T Consensus 52 ~~D--~vi~lGGDGT~L~a~~~~~~PilGIN~--------G~------lGFL-------~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NAD--VIITIGGDGTILRTLQRAKGPILGINM--------GG------LGFL-------TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCC--EEEEEcCcHHHHHHHHHcCCCEEEEEC--------CC------CccC-------cccCHHHHHHHHHHHHcCC
Confidence 456 89999999999999874 456655521 11 1211 2457788889999998764
No 450
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=25.90 E-value=85 Score=28.21 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=31.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
-|++...|+.|-..-.-.||++|.++ +|+|.-++...
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~-i~~vi~l~kdy 39 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE-IWRVIHLEKDY 39 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh-hhhccccchhh
Confidence 35566678999999999999999999 99998776653
No 451
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=25.78 E-value=1.3e+02 Score=26.61 Aligned_cols=41 Identities=12% Similarity=0.269 Sum_probs=31.7
Q ss_pred CCeEEEEcC--CCccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 7 KPHAVLLAS--PGVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 7 ~~~il~~~~--p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
++|++.++. ++.|-..=...||..|+++ |++|.++=.....
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~-G~rVllID~D~~~ 58 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQA-GYKTLLIDGDMRN 58 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 356555554 5888888999999999999 9999988665433
No 452
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=25.74 E-value=4.3e+02 Score=22.71 Aligned_cols=94 Identities=12% Similarity=0.022 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCCeEEEEecCCCc-hhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHhhHHHHH
Q 043859 24 VLELGKRLVTLYNFQVTIFVVASQT-SAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKPAFRS 102 (484)
Q Consensus 24 ~l~La~~L~~r~Gh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (484)
+..|.+...++ |..|.+++..+-. +.+.+.+-+.+| ++++.-...+.++ ....+.+.+
T Consensus 37 ~~~l~~~~~~~-~~~ifllG~~~~~~~~~~~~l~~~yP---~l~ivg~~~g~f~-----------------~~~~~~i~~ 95 (172)
T PF03808_consen 37 FPDLLRRAEQR-GKRIFLLGGSEEVLEKAAANLRRRYP---GLRIVGYHHGYFD-----------------EEEEEAIIN 95 (172)
T ss_pred HHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHHCC---CeEEEEecCCCCC-----------------hhhHHHHHH
Confidence 34455566667 8999999988532 333334444454 5666543322211 112344556
Q ss_pred HHHhcCCCCeEEEeCCchh----hHHHHHHHhCCCeEEEeccc
Q 043859 103 AISALKTTPTALIVDLFGT----ESLAIAEELQIPKYVYVGTN 141 (484)
Q Consensus 103 ~l~~~~~~pD~VI~D~~~~----~~~~~A~~lgIP~v~~~~~~ 141 (484)
.+++. +||+|++-.-.+ |.....+.++.+ +.+....
T Consensus 96 ~I~~~--~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~ 135 (172)
T PF03808_consen 96 RINAS--GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGG 135 (172)
T ss_pred HHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECc
Confidence 66667 999999886554 455566677777 4444443
No 453
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=25.65 E-value=4.5e+02 Score=22.94 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=32.8
Q ss_pred Hhc--CCceeecccc----ccc---chhHHHHHhhhcceEEeeec------C--CCCccCHHHHHHHHHHHhc
Q 043859 379 ITN--GVPMIVWPLY----SEQ---RMNATILTEELGVAIRSKVL------P--SKGVVGREEIKTMVRRILV 434 (484)
Q Consensus 379 l~~--GvP~v~~P~~----~DQ---~~na~rv~~~~G~g~~l~~~------~--~~~~~~~~~l~~~i~~vl~ 434 (484)
++. ++|++++|-. ... ..|-.++ ++.|+-+.-... + +.+-.+.++|.+.+.+.+.
T Consensus 108 ~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L-~~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 108 LALPATTPKLIAPAMNTKMYENPATQRNLKTL-KEDGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred HHcCCCCCEEEEECCCHHHhcCHHHHHHHHHH-HHCCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 445 8999999952 222 4566677 567755443310 0 1134567888888777664
No 454
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=25.59 E-value=96 Score=26.98 Aligned_cols=33 Identities=15% Similarity=0.353 Sum_probs=25.7
Q ss_pred ccChHH-HHHHHHHHHhcCCCeEEEEecCCCchh
Q 043859 18 VGHVIP-VLELGKRLVTLYNFQVTIFVVASQTSA 50 (484)
Q Consensus 18 ~GHv~P-~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 50 (484)
.||... ...+.+.|.++.||+|.++.++.-...
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~v 42 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQV 42 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHH
Confidence 478866 889999998433899999999975543
No 455
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=25.58 E-value=5.2e+02 Score=24.01 Aligned_cols=88 Identities=13% Similarity=0.178 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCchHHHHHHHHHHHhhHHH
Q 043859 21 VIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAAVVTIISVIMREIKPAF 100 (484)
Q Consensus 21 v~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 100 (484)
..-+..|++.|.++ |++|.+++.+...+. .+.+.+..+ ......+. + .. ...++
T Consensus 139 ~~~~~~l~~~l~~~-~~~ivl~g~~~e~~~-~~~i~~~~~---~~~~~~~~-----~----~~------------~l~e~ 192 (279)
T cd03789 139 AERFAALADRLLAR-GARVVLTGGPAEREL-AEEIAAALG---GPRVVNLA-----G----KT------------SLREL 192 (279)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEechhhHHH-HHHHHHhcC---CCccccCc-----C----CC------------CHHHH
Confidence 34688999999999 999999887753322 122222211 00111000 0 00 11234
Q ss_pred HHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEecc
Q 043859 101 RSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVGT 140 (484)
Q Consensus 101 ~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~ 140 (484)
..+++ +-|++|+-. .+...+|..+|+|++.++..
T Consensus 193 ~~li~----~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 193 AALLA----RADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred HHHHH----hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 45555 458888652 35667888999999998753
No 456
>PRK13057 putative lipid kinase; Reviewed
Probab=25.55 E-value=1.9e+02 Score=27.31 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.5
Q ss_pred ccccccCchhHHHHH----hcCCceeeccc
Q 043859 365 GFLSHCGWNSTLESI----TNGVPMIVWPL 390 (484)
Q Consensus 365 ~~ItHgG~gs~~eal----~~GvP~v~~P~ 390 (484)
++|.-||-||+.|++ ..++|+-++|.
T Consensus 53 ~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 53 LVIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred EEEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 799999999999985 34789999995
No 457
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=25.54 E-value=3.2e+02 Score=27.68 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=22.0
Q ss_pred ccccccccCch------hHHHHHhcCCceeecc
Q 043859 363 VGGFLSHCGWN------STLESITNGVPMIVWP 389 (484)
Q Consensus 363 ~~~~ItHgG~g------s~~eal~~GvP~v~~P 389 (484)
.+++++|.|-| .+.+|.+.++|||++-
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 96 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVLT 96 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEEe
Confidence 44788888754 6779999999999993
No 458
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=25.52 E-value=2.3e+02 Score=26.67 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=35.4
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchh
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSA 50 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 50 (484)
..|+|+..++.|-..-...||..|++. |++|.++..+.++..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~-g~~V~li~~D~~r~~ 114 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGDTFRAA 114 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeCCCCCHH
Confidence 456666667999999999999999998 999999998876543
No 459
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.46 E-value=1.4e+02 Score=24.40 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=26.0
Q ss_pred CeEEEEecCCCCCCCHHHHHHHHHHHhh--CCCcEEEEE
Q 043859 269 ESVLYVSFGSGGTLTYEQITELAWGLEL--SQQRFIWVV 305 (484)
Q Consensus 269 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~i~~~ 305 (484)
+.+|+++|||......+.+..+.+.++. .+..|-|.+
T Consensus 1 ~aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~af 39 (127)
T cd03412 1 KAILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAF 39 (127)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 3589999999765344457778887743 456777776
No 460
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=25.44 E-value=99 Score=27.90 Aligned_cols=38 Identities=32% Similarity=0.378 Sum_probs=25.7
Q ss_pred HHHHhcCCCCeEEEeCCch--hhHHHHHHHhCCCeEEEeccc
Q 043859 102 SAISALKTTPTALIVDLFG--TESLAIAEELQIPKYVYVGTN 141 (484)
Q Consensus 102 ~~l~~~~~~pD~VI~D~~~--~~~~~~A~~lgIP~v~~~~~~ 141 (484)
+.+..+ +||+||..... .....-....+||++.+....
T Consensus 54 E~i~~l--~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILAL--KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHT----SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHhC--CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 345557 99999988666 444556777899999877644
No 461
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=25.41 E-value=1.3e+02 Score=25.77 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=21.4
Q ss_pred ccccccccCch------hHHHHHhcCCceeeccc
Q 043859 363 VGGFLSHCGWN------STLESITNGVPMIVWPL 390 (484)
Q Consensus 363 ~~~~ItHgG~g------s~~eal~~GvP~v~~P~ 390 (484)
.+++++|.|-| .+.+|...++|||++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 44677776644 67789999999999963
No 462
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=25.40 E-value=7.6e+02 Score=25.42 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=25.4
Q ss_pred cCCCccChHHHHHHHHHHHhcCCCeEEEEecC
Q 043859 14 ASPGVGHVIPVLELGKRLVTLYNFQVTIFVVA 45 (484)
Q Consensus 14 ~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~ 45 (484)
+-...|-..=...|++.|+++ |.+|..+=+-
T Consensus 6 T~t~vGKT~v~~~L~~~l~~~-G~~v~~fKp~ 36 (475)
T TIGR00313 6 TTSSAGKSTLTAGLCRILARR-GYRVAPFKSQ 36 (475)
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCeEEEECCc
Confidence 334567778889999999999 9999988764
No 463
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=25.37 E-value=54 Score=30.34 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.0
Q ss_pred ccccccCchhHHHHHhc----CCceeecc
Q 043859 365 GFLSHCGWNSTLESITN----GVPMIVWP 389 (484)
Q Consensus 365 ~~ItHgG~gs~~eal~~----GvP~v~~P 389 (484)
++|+-||-||++.++.. ++|++.+-
T Consensus 28 lvi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 28 VIVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred EEEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 89999999999988654 67888774
No 464
>PLN02293 adenine phosphoribosyltransferase
Probab=25.37 E-value=2.3e+02 Score=24.88 Aligned_cols=44 Identities=7% Similarity=-0.172 Sum_probs=29.1
Q ss_pred HHHhhHHHHHHHHhcCCCCeEEEeCC--chhhHHHHHHHhCCCeEEEe
Q 043859 93 MREIKPAFRSAISALKTTPTALIVDL--FGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 93 ~~~~~~~l~~~l~~~~~~pD~VI~D~--~~~~~~~~A~~lgIP~v~~~ 138 (484)
++.+.+.+.+.+++. ++|+|+.=. -.+.+..+|..+|+|++.+-
T Consensus 47 ~~~~~~~l~~~~~~~--~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~r 92 (187)
T PLN02293 47 FKDTIDLFVERYRDM--GISVVAGIEARGFIFGPPIALAIGAKFVPLR 92 (187)
T ss_pred HHHHHHHHHHHHhhc--CCCEEEEeCCCchHHHHHHHHHHCCCEEEEE
Confidence 344455555555555 899988432 34456779999999977643
No 465
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=25.28 E-value=5.9e+02 Score=24.14 Aligned_cols=123 Identities=9% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCCCCCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCC
Q 043859 1 MESSSSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVD 80 (484)
Q Consensus 1 m~~~~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 80 (484)
+....++|||+++..+ .||-.-.+--+..--+. +++|..+.+...... .+.+..+ +.+..++... ..
T Consensus 83 i~~~~~~~ri~vl~Sg-~g~nl~al~~~~~~~~~-~~~i~~visn~~~~~---~lA~~~g----Ip~~~~~~~~--~~-- 149 (286)
T PRK13011 83 LHDPAARPKVLIMVSK-FDHCLNDLLYRWRIGEL-PMDIVGVVSNHPDLE---PLAAWHG----IPFHHFPITP--DT-- 149 (286)
T ss_pred EeecccCceEEEEEcC-CcccHHHHHHHHHcCCC-CcEEEEEEECCccHH---HHHHHhC----CCEEEeCCCc--Cc--
Q ss_pred CCchHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEE-eCCchhhHHHHHHHhCCCeEEEecccHHHHHHHHhhcccccccc
Q 043859 81 PDAAVVTIISVIMREIKPAFRSAISALKTTPTALI-VDLFGTESLAIAEELQIPKYVYVGTNAWCVALFVYAPTLDKTVQ 159 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI-~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~p~~~~~~~ 159 (484)
.......+.+.++++ ++|++| +.++..-...+-+.+.-.++-++++. +|.+.+..+
T Consensus 150 ------------~~~~~~~~~~~l~~~--~~Dlivlagy~~il~~~~l~~~~~~iiNiHpSL---------LP~~rG~~~ 206 (286)
T PRK13011 150 ------------KPQQEAQVLDVVEES--GAELVVLARYMQVLSPELCRKLAGRAINIHHSF---------LPGFKGAKP 206 (286)
T ss_pred ------------hhhhHHHHHHHHHHh--CcCEEEEeChhhhCCHHHHhhccCCeEEecccc---------CCCCCCCcH
No 466
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=25.27 E-value=1.5e+02 Score=27.28 Aligned_cols=38 Identities=11% Similarity=-0.087 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCCeEEEeC--CchhhHHHHHHHhCCCeEEEe
Q 043859 99 AFRSAISALKTTPTALIVD--LFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D--~~~~~~~~~A~~lgIP~v~~~ 138 (484)
.+...+.+. .+|+|+.= .-.+.+..+|..+|+|++..-
T Consensus 102 ~la~~~~~~--~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~R 141 (238)
T PRK08558 102 VVAERFMGL--RVDVVLTAATDGIPLAVAIASYFGADLVYAK 141 (238)
T ss_pred HHHHHccCC--CCCEEEEECcccHHHHHHHHHHHCcCEEEEE
Confidence 333333444 89999843 345566679999999988653
No 467
>PRK13768 GTPase; Provisional
Probab=25.23 E-value=2.9e+02 Score=25.58 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=32.8
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCC
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQ 47 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~ 47 (484)
+-+++...++.|-..=...++..|.+. |++|.++..++.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~-g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ-GYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc-CCceEEEECCCc
Confidence 356667778999999999999999998 999999987753
No 468
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=25.21 E-value=2.7e+02 Score=28.14 Aligned_cols=36 Identities=8% Similarity=0.046 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHh-cCCCeEEEEecCCCc
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVT-LYNFQVTIFVVASQT 48 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~-r~Gh~Vt~~~~~~~~ 48 (484)
.+|++++.-+ .-.+++++.|.+ - |-+|+.+++....
T Consensus 290 Gkrvai~g~~-----~~~~~la~~L~eel-Gm~~v~v~t~~~~ 326 (427)
T PRK02842 290 GKRVFFLPDS-----QLEIPLARFLSREC-GMELVEVGTPYLN 326 (427)
T ss_pred CcEEEEECCc-----hhHHHHHHHHHHhC-CCEEEEeCCCCCC
Confidence 4577776432 456778888987 7 8999888876543
No 469
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=25.20 E-value=1.3e+02 Score=28.58 Aligned_cols=39 Identities=8% Similarity=0.015 Sum_probs=29.5
Q ss_pred CCCCeEEEEcCCCcc-C---hHHHHHHHHHHHhcCCCeEEEEec
Q 043859 5 SSKPHAVLLASPGVG-H---VIPVLELGKRLVTLYNFQVTIFVV 44 (484)
Q Consensus 5 ~~~~~il~~~~p~~G-H---v~P~l~La~~L~~r~Gh~Vt~~~~ 44 (484)
|+++||+++..+... | +.-.-+++++|.+. ||+|+++..
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~-g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQ-GYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHc-CCEEEEEcC
Confidence 358899999886443 2 45567889999998 999988854
No 470
>PRK14974 cell division protein FtsY; Provisional
Probab=25.13 E-value=2e+02 Score=28.12 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=37.1
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchh
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSA 50 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~ 50 (484)
+..|+|+..++.|-..-...||..|.++ |+.|.+++...++..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~~V~li~~Dt~R~~ 182 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKN-GFSVVIAAGDTFRAG 182 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcCcHH
Confidence 4567788888999999999999999998 999999988876643
No 471
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=25.00 E-value=2.4e+02 Score=28.30 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=22.9
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEe
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFV 43 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~ 43 (484)
|||+++-.++..| +|++.|.+..|+.+.++.
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~~ 31 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYVA 31 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEe
Confidence 7999999997777 599999886244454443
No 472
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.91 E-value=1.3e+02 Score=28.14 Aligned_cols=55 Identities=11% Similarity=0.098 Sum_probs=36.2
Q ss_pred CCCccccccccCchhHHHHHhc-----CCceeecccccccchhHHHHHhhhcceEEeeecCCCCccCHHHHHHHHHHHhc
Q 043859 360 HPSVGGFLSHCGWNSTLESITN-----GVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSKGVVGREEIKTMVRRILV 434 (484)
Q Consensus 360 ~~~~~~~ItHgG~gs~~eal~~-----GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~~~~~~~~l~~~i~~vl~ 434 (484)
.++ ++|+=||-||++.++.. .+|++.+-..+ .+|-. -..+.+++.+.+.++++
T Consensus 39 ~~D--~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL-------~~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 39 NAN--IIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY-------CDFHIDDLDKMIQAITK 96 (264)
T ss_pred Ccc--EEEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc-------ccCCHHHHHHHHHHHHc
Confidence 355 89999999999999874 45655553200 12211 34567888888888886
Q ss_pred cc
Q 043859 435 DE 436 (484)
Q Consensus 435 ~~ 436 (484)
++
T Consensus 97 g~ 98 (264)
T PRK03501 97 EE 98 (264)
T ss_pred CC
Confidence 53
No 473
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=24.83 E-value=1.1e+02 Score=28.60 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=24.0
Q ss_pred CeEEEEecCCCCCC-CHHHHHHHHHHHhh--CCCcEEEEEe
Q 043859 269 ESVLYVSFGSGGTL-TYEQITELAWGLEL--SQQRFIWVVR 306 (484)
Q Consensus 269 ~~~v~vs~Gs~~~~-~~~~~~~~~~al~~--~~~~~i~~~~ 306 (484)
|.+|+|||||.... ...-+..+.+.++. .+..|.|++.
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfT 41 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFT 41 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEch
Confidence 35899999997443 33367777777755 5788999973
No 474
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=24.75 E-value=1.2e+02 Score=28.72 Aligned_cols=39 Identities=10% Similarity=0.105 Sum_probs=34.8
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCC
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQ 47 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~ 47 (484)
|+|+|..=++-|-..-.+.||..|+++ |++|.++=-.+.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~-G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARR-GKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 678999989999999999999999999 999998876643
No 475
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=24.74 E-value=1.3e+02 Score=30.92 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=37.2
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHHHhhh
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESKILQS 58 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~~~~~ 58 (484)
.+||++...++.+ .+=...|.+.|+++ |++|.++.++.-...+....++.
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~-G~~V~VvmT~sA~~fv~p~~~~~ 119 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKER-GAHVRCVLTKAAQQFVTPLTASA 119 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhC-cCEEEEEECcCHHHHhhHHHHHH
Confidence 4678877666655 45889999999999 99999999997655554433333
No 476
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=24.68 E-value=5.3e+02 Score=23.39 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=37.8
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCchhHHHH
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTSAAESK 54 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~~~~~ 54 (484)
.--+++.-.++.|-..-.++++..+.++ |..+.|++.+...+.+.+.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~~~yi~~e~~~~~~~~~ 70 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVSTQLTTTEFIKQ 70 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHH
Confidence 4467777778999999999999989888 9999999988766554444
No 477
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=24.66 E-value=1.6e+02 Score=25.93 Aligned_cols=81 Identities=12% Similarity=0.049 Sum_probs=46.4
Q ss_pred ecccccccchhHHHHHhhhcceEEeeecCCC--------CccCHHHHH----HHHHHHhcccchHHHHHHHHHHHHHHHH
Q 043859 387 VWPLYSEQRMNATILTEELGVAIRSKVLPSK--------GVVGREEIK----TMVRRILVDEEGYEIRAKVKELQRSAQK 454 (484)
Q Consensus 387 ~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~--------~~~~~~~l~----~~i~~vl~~~~~~~~~~~a~~l~~~~~~ 454 (484)
..|.+.||..--..+-|-..+|+.-.+.-++ ..++++.|+ +.|+++|.|+. +-+|-++++..+.+
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~---IIRnr~KI~Avi~N 98 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAG---IIRHRGKIQAIIGN 98 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCch---hHHhHHHHHHHHHH
Confidence 5567888887776664566677654321111 346667766 77888888876 44444444444332
Q ss_pred hh-----hcCCCChHHHHHHH
Q 043859 455 AW-----TRESGSSYSSLARL 470 (484)
Q Consensus 455 a~-----~~~~g~~~~~~~~~ 470 (484)
|. ++++||-...+=.+
T Consensus 99 A~~~l~i~~e~gSf~~ylW~f 119 (187)
T PRK10353 99 ARAYLQMEQNGEPFADFVWSF 119 (187)
T ss_pred HHHHHHHHHhcCCHHHHHhhc
Confidence 21 15566666555333
No 478
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.65 E-value=6.2e+02 Score=26.71 Aligned_cols=60 Identities=15% Similarity=0.031 Sum_probs=35.2
Q ss_pred ccccccCchhHHHH--HhcCCceeecccccccchhHHHHHhhhcc-eEEeeecCCCCccCHHHHHHHHHHHhc
Q 043859 365 GFLSHCGWNSTLES--ITNGVPMIVWPLYSEQRMNATILTEELGV-AIRSKVLPSKGVVGREEIKTMVRRILV 434 (484)
Q Consensus 365 ~~ItHgG~gs~~ea--l~~GvP~v~~P~~~DQ~~na~rv~~~~G~-g~~l~~~~~~~~~~~~~l~~~i~~vl~ 434 (484)
+++..||+|.+... ..++-+.... .....++.++.. |-+|+ |.+ .-+.++|..++++.+.
T Consensus 471 vV~NN~~y~~i~~~q~~~~~~~~~~~-~~~~~~d~~~~A-~a~G~~~~~--------v~~~~eL~~al~~a~~ 533 (572)
T PRK08979 471 INLNNRFLGMVKQWQDMIYQGRHSHS-YMDSVPDFAKIA-EAYGHVGIR--------ISDPDELESGLEKALA 533 (572)
T ss_pred EEEeCCccHHHHHHHHHHhCCccccc-CCCCCCCHHHHH-HHCCCeEEE--------ECCHHHHHHHHHHHHh
Confidence 68999999977532 3233332111 111235556554 66665 233 3478889999988875
No 479
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.61 E-value=63 Score=28.08 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=26.0
Q ss_pred HHHHHHHHhc-CCCCeEEEeCCchhhHHHHHHHhCCCeEEEecc
Q 043859 98 PAFRSAISAL-KTTPTALIVDLFGTESLAIAEELQIPKYVYVGT 140 (484)
Q Consensus 98 ~~l~~~l~~~-~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~~ 140 (484)
..++..++++ ..+.|+||.+.. +..+|+++|+|++.+.++
T Consensus 112 ~e~~~~i~~~~~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 112 EEIEAAIKQAKAEGVDVIVGGGV---VCRLARKLGLPGVLIESG 152 (176)
T ss_dssp HHHHHHHHHHHHTT--EEEESHH---HHHHHHHTTSEEEESS--
T ss_pred HHHHHHHHHHHHcCCcEEECCHH---HHHHHHHcCCcEEEEEec
Confidence 3455555554 348999999952 468899999999887653
No 480
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=24.55 E-value=1.3e+02 Score=28.70 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=32.5
Q ss_pred CCCCeEE-EEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 5 SSKPHAV-LLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 5 ~~~~~il-~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
|+|||++ |+.=++-|-..-...||-.|++. |++|.++-..+
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~-g~kVLliD~D~ 42 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEM-GQKILIVGCDP 42 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEeccc
Confidence 3566554 44447999999999999999999 99999996554
No 481
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=24.46 E-value=3.2e+02 Score=24.67 Aligned_cols=47 Identities=6% Similarity=0.025 Sum_probs=33.8
Q ss_pred cccccccCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHhhCCCcEEEE
Q 043859 257 NELFDWLDKQPSESVLYVSFGSGGTLTYEQITELAWGLELSQQRFIWV 304 (484)
Q Consensus 257 ~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 304 (484)
+.+.+|+.+. .+.+.||=+-|.........++..++|+.+|..+.-.
T Consensus 22 ~~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L 68 (224)
T COG3340 22 PFIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSEL 68 (224)
T ss_pred HHHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeee
Confidence 4455566554 4569999888776555667888999999998876443
No 482
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=24.39 E-value=1.2e+02 Score=30.77 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEe
Q 043859 99 AFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYV 138 (484)
Q Consensus 99 ~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~ 138 (484)
++.+++++. ++|++|.... ...+|+++|||++.+.
T Consensus 364 ~l~~~i~~~--~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 364 DLEDLACAA--GADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred HHHHHHhhc--CCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 446677777 9999998853 4678999999998764
No 483
>PLN02285 methionyl-tRNA formyltransferase
Probab=24.34 E-value=5.9e+02 Score=24.76 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=24.7
Q ss_pred CCCCeEEEEcCCCccChHHHHHHHHHHHh--cCCCeEEEEecCCCc
Q 043859 5 SSKPHAVLLASPGVGHVIPVLELGKRLVT--LYNFQVTIFVVASQT 48 (484)
Q Consensus 5 ~~~~~il~~~~p~~GHv~P~l~La~~L~~--r~Gh~Vt~~~~~~~~ 48 (484)
.++|||+|+-.+..| +.-+-+|.+...+ . +|+|..+.+.+..
T Consensus 4 ~~~~kI~f~Gt~~fa-~~~L~~L~~~~~~~~~-~~~iv~Vvt~~~~ 47 (334)
T PLN02285 4 GRKKRLVFLGTPEVA-ATVLDALLDASQAPDS-AFEVAAVVTQPPA 47 (334)
T ss_pred CCccEEEEEECCHHH-HHHHHHHHhhhhccCC-CCeEEEEEeCCCC
Confidence 468999999665443 2223333333322 3 6899888777543
No 484
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=24.32 E-value=2.1e+02 Score=27.70 Aligned_cols=40 Identities=5% Similarity=-0.073 Sum_probs=33.1
Q ss_pred eEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCCCch
Q 043859 9 HAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVASQTS 49 (484)
Q Consensus 9 ~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~ 49 (484)
-+.++..|+.|-..=++.++.+.+++ |..|.|+..+...+
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId~E~~~~ 96 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALD 96 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEcccchhH
Confidence 45566667999999999999999998 89999998886443
No 485
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=24.31 E-value=6.5e+02 Score=24.26 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=56.1
Q ss_pred CeEEEEcCCCcc----ChHHHHHHHHHHHhcCCCeEEEEecCCCchh-HHHHHhhhccCCCceEEEecCCCCCCCCCCCC
Q 043859 8 PHAVLLASPGVG----HVIPVLELGKRLVTLYNFQVTIFVVASQTSA-AESKILQSAMSSKLCHVIEIPAPDISGLVDPD 82 (484)
Q Consensus 8 ~~il~~~~p~~G----Hv~P~l~La~~L~~r~Gh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 82 (484)
..|++.+..+.. -..-+..|++.|.++ |.+|.+++.+...+. ..+.+.+..+ .-... .+ ..
T Consensus 182 ~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~-~~~ivl~g~p~~~e~~~~~~i~~~~~---~~~~~--------~l-~g- 247 (344)
T TIGR02201 182 NYIVIQPTSRWFFKCWDNDRFSALIDALHAR-GYEVVLTSGPDKDELAMVNEIAQGCQ---TPRVT--------SL-AG- 247 (344)
T ss_pred CEEEEeCCCCccccCCCHHHHHHHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHhhCC---CCccc--------cc-CC-
Confidence 345565543321 134567899999988 899998877542221 1122211111 00000 00 00
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhhHHHHHHHhCCCeEEEec
Q 043859 83 AAVVTIISVIMREIKPAFRSAISALKTTPTALIVDLFGTESLAIAEELQIPKYVYVG 139 (484)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~~~~~A~~lgIP~v~~~~ 139 (484)
+....++..+++ +-|++|+- ..+...+|..+|+|+|.++.
T Consensus 248 -----------~~sL~el~ali~----~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 248 -----------KLTLPQLAALID----HARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred -----------CCCHHHHHHHHH----hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 001223445555 56899976 56677899999999999874
No 486
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=24.30 E-value=3.8e+02 Score=28.34 Aligned_cols=28 Identities=7% Similarity=0.126 Sum_probs=22.6
Q ss_pred CccccccccCch------hHHHHHhcCCceeecc
Q 043859 362 SVGGFLSHCGWN------STLESITNGVPMIVWP 389 (484)
Q Consensus 362 ~~~~~ItHgG~g------s~~eal~~GvP~v~~P 389 (484)
..+++++|.|-| .+.+|...++|||++.
T Consensus 64 ~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 64 RMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 344788888855 6679999999999995
No 487
>PRK13059 putative lipid kinase; Reviewed
Probab=24.25 E-value=2.8e+02 Score=26.31 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=21.9
Q ss_pred ccccccCchhHHHHH---h---cCCceeeccc
Q 043859 365 GFLSHCGWNSTLESI---T---NGVPMIVWPL 390 (484)
Q Consensus 365 ~~ItHgG~gs~~eal---~---~GvP~v~~P~ 390 (484)
++|.-||-||++|++ . .++|+-++|.
T Consensus 59 ~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 59 YILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred EEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 799999999998874 2 3589999996
No 488
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=24.20 E-value=1.6e+02 Score=26.02 Aligned_cols=40 Identities=18% Similarity=0.041 Sum_probs=30.4
Q ss_pred CeEEEEcC-CCcc-ChHHHHHHHHHHHhc--CCCeEEEEecCCC
Q 043859 8 PHAVLLAS-PGVG-HVIPVLELGKRLVTL--YNFQVTIFVVASQ 47 (484)
Q Consensus 8 ~~il~~~~-p~~G-Hv~P~l~La~~L~~r--~Gh~Vt~~~~~~~ 47 (484)
||||+.-| |..| -+||.+..+|+|-.+ +|++|...--+..
T Consensus 1 ~kvLvTGFePF~~~~~NPs~e~vk~L~~~~i~g~~V~~~~lP~~ 44 (207)
T COG2039 1 MKVLVTGFEPFGGEPINPSWEAVKELNGRIIGGAEVKGRILPVV 44 (207)
T ss_pred CeEEEEeccCCCCCCCChHHHHHHhcCcccccCceEEEEEcCcc
Confidence 57787777 4444 589999999999766 3899998876643
No 489
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=24.19 E-value=1.1e+02 Score=29.32 Aligned_cols=40 Identities=5% Similarity=-0.060 Sum_probs=30.3
Q ss_pred CeEEEEcCC---CccChHHHHHHHHHHHhcCCCeEEEEecCCCc
Q 043859 8 PHAVLLASP---GVGHVIPVLELGKRLVTLYNFQVTIFVVASQT 48 (484)
Q Consensus 8 ~~il~~~~p---~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~~~ 48 (484)
|||+|+.-| -.-+..-...|.++.++| ||+|.++.+....
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~r-G~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKR-GHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHc-CCEEEEEehhheE
Confidence 567777654 233455678999999999 9999999988643
No 490
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=23.79 E-value=1.4e+02 Score=27.50 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=25.2
Q ss_pred CCCCCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecC
Q 043859 4 SSSKPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVA 45 (484)
Q Consensus 4 ~~~~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~ 45 (484)
.+.+++|+++..=-.==..-+-+....|.++ ||+|++++-.
T Consensus 7 ~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~-G~~V~v~~lT 47 (237)
T COG2120 7 MLDPLRVLVVFAHPDDEEIGCGGTLAKLAAR-GVEVTVVCLT 47 (237)
T ss_pred cccCCcEEEEecCCcchhhccHHHHHHHHHC-CCeEEEEEcc
Confidence 4556777766542222223344555566788 9999999844
No 491
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=23.75 E-value=2.3e+02 Score=27.76 Aligned_cols=89 Identities=20% Similarity=0.210 Sum_probs=62.4
Q ss_pred CCceEecCCcchhhhcc-CCCcccccccc---Cch-hHHHHHhcCCceeecccccccchhHHHHHhhhcceEEeeecCCC
Q 043859 343 DIGVVVPQWAPQIDILS-HPSVGGFLSHC---GWN-STLESITNGVPMIVWPLYSEQRMNATILTEELGVAIRSKVLPSK 417 (484)
Q Consensus 343 ~~~v~v~~~ipq~~vL~-~~~~~~~ItHg---G~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~g~~l~~~~~~ 417 (484)
..-..+..-.+..+.|+ +.| ++|+|= |.| .-.|+|+-|-|+| .|+..+ .+ +|-+.
T Consensus 252 ~gkasfegR~~~p~fla~~tD--~VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l-~d--~GYYY------ 311 (364)
T PF10933_consen 252 DGKASFEGRFDFPDFLAQHTD--AVVSHQWENPLNYLYYDALYGGYPLV---------HNSPLL-KD--VGYYY------ 311 (364)
T ss_pred cCeeEEeeecChHHHHHhCCC--EEEeccccchhhHHHHHHHhcCCCcc---------cCcchh-cc--cCcCC------
Confidence 34455656666666555 566 788884 333 6789999999998 477777 44 77664
Q ss_pred CccCHHHHHHHHHHHhc--ccchHHHHHHHHHHHHH
Q 043859 418 GVVGREEIKTMVRRILV--DEEGYEIRAKVKELQRS 451 (484)
Q Consensus 418 ~~~~~~~l~~~i~~vl~--~~~~~~~~~~a~~l~~~ 451 (484)
..++..+=++++.+++. |.+.++|+++|+++=..
T Consensus 312 ~~fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~ 347 (364)
T PF10933_consen 312 PDFDAFEGARQLLRAIREHDADLDAYRARARRLLDR 347 (364)
T ss_pred CCccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 46677666666666665 45577899999998777
No 492
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=23.54 E-value=98 Score=28.18 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=26.0
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
|+|+++-.+-.| ..+|+.|.+. ||+|+.+-..+
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~-g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEE-GHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhC-CCceEEEEcCH
Confidence 566666666544 6899999999 99999888775
No 493
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=23.44 E-value=3.3e+02 Score=25.49 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=25.6
Q ss_pred CCeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 7 KPHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 7 ~~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
+++-++++..+.|= -..+|+.|++| ||+|.++.-..
T Consensus 5 ~~~~~lITGASsGI---G~~~A~~lA~~-g~~liLvaR~~ 40 (265)
T COG0300 5 KGKTALITGASSGI---GAELAKQLARR-GYNLILVARRE 40 (265)
T ss_pred CCcEEEEECCCchH---HHHHHHHHHHC-CCEEEEEeCcH
Confidence 34455555554442 36899999999 99999988664
No 494
>PRK10586 putative oxidoreductase; Provisional
Probab=23.34 E-value=6.3e+02 Score=24.90 Aligned_cols=112 Identities=11% Similarity=-0.086 Sum_probs=55.0
Q ss_pred CCeEEEEcCC-CccChHHHHHHHHHHHhcCC-CeEEEEecCCCchhHHHHHhhhccCCCceEEEecCCCCCCCCCCCCch
Q 043859 7 KPHAVLLASP-GVGHVIPVLELGKRLVTLYN-FQVTIFVVASQTSAAESKILQSAMSSKLCHVIEIPAPDISGLVDPDAA 84 (484)
Q Consensus 7 ~~~il~~~~p-~~GHv~P~l~La~~L~~r~G-h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 84 (484)
.|++...|.- .+| -.-+-.|++.+.+- | .++.+++.+...+.......+.... .++.+..+.... +
T Consensus 5 ~~~~~~~p~~y~~G-~ga~~~l~~~~~~~-g~~~~lvv~g~~~~~~~~~~~~~~l~~-~~~~~~~~~g~~-----~---- 72 (362)
T PRK10586 5 PIRVVVGPANYFSH-PGSIDHLHDFFTDE-QLSRAVWIYGERAIAAAQPYLPPAFEL-PGAKHILFRGHC-----S---- 72 (362)
T ss_pred cchheeCCcceEEC-cCHHHHHHHHHHhc-CCCeEEEEEChHHHHHHHHHHHHHHHH-cCCeEEEeCCCC-----C----
Confidence 3444444332 233 23556788888876 6 7888888775544332222222210 114443333210 0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCeEEEeCC--chh-hHHHHHHHhCCCeEEEecccH
Q 043859 85 VVTIISVIMREIKPAFRSAISALKTTPTALIVDL--FGT-ESLAIAEELQIPKYVYVGTNA 142 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~--~~~-~~~~~A~~lgIP~v~~~~~~~ 142 (484)
.+.+.++.+....+.|+||.=. ... .+-.+|..+++|++.+.+...
T Consensus 73 ------------~~~v~~l~~~~~~~~d~iiavGGGs~iD~aK~~a~~~~~p~i~vPT~a~ 121 (362)
T PRK10586 73 ------------ESDVAQLAAASGDDRQVVIGVGGGALLDTAKALARRLGLPFVAIPTIAA 121 (362)
T ss_pred ------------HHHHHHHHHHhccCCCEEEEecCcHHHHHHHHHHhhcCCCEEEEeCCcc
Confidence 0111112222222789999432 111 233567778999998876543
No 495
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.34 E-value=1.4e+02 Score=24.34 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=27.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEecCC
Q 043859 10 AVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVVAS 46 (484)
Q Consensus 10 il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~~~ 46 (484)
+.+-|.-..-.+.-.+=+.-.|..+ |++||++.++.
T Consensus 7 v~lGCPeiP~qissaiYls~klkkk-gf~v~VaateA 42 (148)
T COG4081 7 VSLGCPEIPPQISSAIYLSHKLKKK-GFDVTVAATEA 42 (148)
T ss_pred EEecCCCCCccchHHHHHHHHhhcc-CccEEEecCHh
Confidence 3333444666777778888999999 99999999984
No 496
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=23.20 E-value=1.6e+02 Score=27.24 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCCeEEEeCCchh----hHHHHHHHhCCCeEEEe
Q 043859 98 PAFRSAISALKTTPTALIVDLFGT----ESLAIAEELQIPKYVYV 138 (484)
Q Consensus 98 ~~l~~~l~~~~~~pD~VI~D~~~~----~~~~~A~~lgIP~v~~~ 138 (484)
+.-..+++++ +.|+||+-..-. .=..+|+.+|||++.+.
T Consensus 180 e~n~aL~~~~--~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 222 (248)
T PRK08057 180 ELERALLRQH--RIDVVVTKNSGGAGTEAKLEAARELGIPVVMIA 222 (248)
T ss_pred HHHHHHHHHc--CCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 3447888899 999999764222 11259999999999876
No 497
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=23.19 E-value=94 Score=29.53 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=25.8
Q ss_pred CeEEEEcCCCccChHHHHHHHHHHHhcCCCeEEEEec
Q 043859 8 PHAVLLASPGVGHVIPVLELGKRLVTLYNFQVTIFVV 44 (484)
Q Consensus 8 ~~il~~~~p~~GHv~P~l~La~~L~~r~Gh~Vt~~~~ 44 (484)
|||+|+-.++.| ..+|..|.+. ||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHC-CCceEEEec
Confidence 688888777776 4578889998 999999987
No 498
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=23.09 E-value=1.6e+02 Score=26.55 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=32.5
Q ss_pred ccCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHH
Q 043859 419 VVGREEIKTMVRRILVDEEGYEIRAKVKELQRSAQKAWTRESGSSYSSLARLA 471 (484)
Q Consensus 419 ~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~a~~~~~g~~~~~~~~~~ 471 (484)
.++.++|.+.|+.+= = |+.+|+.+.+.++.-++..+|.--+..++|+
T Consensus 66 ~a~~~~l~~~I~~iG---l---yr~KAk~I~~~~~~l~e~~~g~vP~~~~eL~ 112 (211)
T COG0177 66 NADEEELEELIKSIG---L---YRNKAKNIKELARILLEKFGGEVPDTREELL 112 (211)
T ss_pred cCCHHHHHHHHHhcC---C---cHHHHHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 457777877777542 2 8899999998888777555565555666655
No 499
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.02 E-value=1.2e+02 Score=28.00 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=22.4
Q ss_pred HHHhcCCCCeEEEeCCchhh--HHH-HHHHhCCCeEEEec
Q 043859 103 AISALKTTPTALIVDLFGTE--SLA-IAEELQIPKYVYVG 139 (484)
Q Consensus 103 ~l~~~~~~pD~VI~D~~~~~--~~~-~A~~lgIP~v~~~~ 139 (484)
.+..+ +||+||....... ... +-+.+|||++.+..
T Consensus 69 ~i~~l--~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 69 KIAAL--KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred HHHhc--CCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 34456 9999998754432 122 33448999888754
No 500
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=22.98 E-value=2.6e+02 Score=23.87 Aligned_cols=49 Identities=12% Similarity=0.290 Sum_probs=36.0
Q ss_pred HHHHHHHhhHHHHHHHHhcCCCCeEEEeCCchhh---------------HHHHHHHhCCCeEEEec
Q 043859 89 ISVIMREIKPAFRSAISALKTTPTALIVDLFGTE---------------SLAIAEELQIPKYVYVG 139 (484)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~pD~VI~D~~~~~---------------~~~~A~~lgIP~v~~~~ 139 (484)
+...+......+.+++++. +||.+..+..++. ...++.+.|||++-+.+
T Consensus 38 ~~~RL~~I~~~l~~~i~~y--~P~~~aiE~~F~~~N~~sa~~lg~arGvilla~~~~~ipv~Ey~P 101 (156)
T TIGR00228 38 LPSRLKLIYAGVTEIITQF--QPNYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAA 101 (156)
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCEEEEeHHhhccCHHHHHHHHHHHHHHHHHHHHcCCCEEEECH
Confidence 3455667788899999999 9999988854431 23467778999887654
Done!