Query 043865
Match_columns 203
No_of_seqs 143 out of 1160
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 15:32:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.7 5.4E-18 1.8E-22 108.2 0.9 42 114-155 4-48 (60)
2 2ct7_A Ring finger protein 31; 99.6 1.3E-17 4.6E-22 114.5 -5.2 76 23-105 3-82 (86)
3 2jmo_A Parkin; IBR, E3 ligase, 99.5 4.9E-16 1.7E-20 105.1 -3.3 70 21-96 2-76 (80)
4 2jmo_A Parkin; IBR, E3 ligase, 97.8 2.3E-06 8E-11 57.2 -0.7 45 114-159 23-75 (80)
5 1wim_A KIAA0161 protein; ring 97.7 3.4E-05 1.2E-09 52.8 4.2 40 2-41 51-92 (94)
6 2ct7_A Ring finger protein 31; 97.7 1.8E-05 6.1E-10 53.6 2.7 38 114-151 23-61 (86)
7 1wd2_A Ariadne-1 protein homol 96.8 0.0013 4.6E-08 41.2 3.7 40 42-88 4-45 (60)
8 4ap4_A E3 ubiquitin ligase RNF 94.7 0.0014 4.8E-08 46.9 -3.2 80 72-153 29-111 (133)
9 3hcs_A TNF receptor-associated 90.0 0.21 7E-06 37.2 3.1 68 43-130 81-151 (170)
10 2k4x_A 30S ribosomal protein S 89.4 0.13 4.5E-06 31.3 1.3 28 116-143 18-46 (55)
11 3j20_Y 30S ribosomal protein S 87.8 0.18 6.3E-06 30.0 1.1 29 115-143 18-47 (50)
12 1vq8_Z 50S ribosomal protein L 86.8 0.5 1.7E-05 31.2 3.0 31 114-144 25-56 (83)
13 3lrq_A E3 ubiquitin-protein li 85.9 0.14 4.9E-06 34.8 -0.1 32 117-153 23-55 (100)
14 2jrp_A Putative cytoplasmic pr 85.8 0.54 1.9E-05 30.9 2.7 35 117-153 3-43 (81)
15 1pft_A TFIIB, PFTFIIBN; N-term 85.3 0.86 2.9E-05 26.7 3.2 29 115-143 4-34 (50)
16 2ysj_A Tripartite motif-contai 83.2 0.21 7.2E-06 30.6 -0.2 33 116-153 20-52 (63)
17 1z60_A TFIIH basal transcripti 81.8 0.48 1.6E-05 29.2 1.1 23 69-91 30-52 (59)
18 1weo_A Cellulose synthase, cat 80.5 1.2 4E-05 29.8 2.7 45 65-133 31-75 (93)
19 2ysl_A Tripartite motif-contai 79.7 0.35 1.2E-05 30.4 -0.1 33 116-153 20-52 (73)
20 1wfh_A Zinc finger (AN1-like) 78.9 0.81 2.8E-05 28.6 1.4 43 115-163 14-56 (64)
21 1iym_A EL5; ring-H2 finger, ub 77.9 0.52 1.8E-05 27.7 0.3 35 117-153 6-41 (55)
22 2jne_A Hypothetical protein YF 77.8 1.5 5E-05 29.8 2.5 35 117-153 33-73 (101)
23 1wfl_A Zinc finger protein 216 77.8 0.8 2.7E-05 29.5 1.2 41 116-162 25-65 (74)
24 2jr6_A UPF0434 protein NMA0874 77.5 1.4 4.7E-05 28.0 2.2 29 115-143 7-36 (68)
25 2ecj_A Tripartite motif-contai 76.5 0.47 1.6E-05 28.2 -0.2 33 116-153 15-47 (58)
26 2ecv_A Tripartite motif-contai 76.2 1.4 4.8E-05 28.1 2.1 15 115-129 58-72 (85)
27 2d8t_A Dactylidin, ring finger 76.0 0.56 1.9E-05 29.4 0.1 33 116-153 15-47 (71)
28 2ct2_A Tripartite motif protei 75.9 0.43 1.5E-05 31.0 -0.5 36 116-152 15-50 (88)
29 1wg2_A Zinc finger (AN1-like) 75.4 1 3.6E-05 28.1 1.2 43 115-163 14-56 (64)
30 2yur_A Retinoblastoma-binding 75.1 0.6 2.1E-05 29.6 0.0 32 117-153 16-48 (74)
31 2hu9_A MERP, mercuric transpor 74.9 2.2 7.5E-05 30.6 3.0 48 2-61 2-52 (130)
32 1e4u_A Transcriptional repress 74.9 0.71 2.4E-05 29.9 0.3 35 117-152 12-46 (78)
33 3nyb_B Protein AIR2; polya RNA 73.4 4.2 0.00014 26.7 3.9 64 77-163 5-68 (83)
34 2djb_A Polycomb group ring fin 72.7 0.62 2.1E-05 29.2 -0.4 31 117-152 16-47 (72)
35 2ecm_A Ring finger and CHY zin 71.7 1.2 4.2E-05 25.9 0.9 35 117-153 6-41 (55)
36 2ecn_A Ring finger protein 141 71.7 0.88 3E-05 28.2 0.2 32 116-153 15-46 (70)
37 3u5c_f 40S ribosomal protein S 71.6 1.7 5.9E-05 31.9 1.8 33 44-81 118-150 (152)
38 2egp_A Tripartite motif-contai 71.1 0.65 2.2E-05 29.5 -0.5 33 117-154 13-45 (79)
39 2ecy_A TNF receptor-associated 71.1 0.66 2.3E-05 28.5 -0.5 32 117-153 16-47 (66)
40 3ng2_A RNF4, snurf, ring finge 71.0 0.58 2E-05 29.0 -0.8 38 116-153 10-49 (71)
41 1wfp_A Zinc finger (AN1-like) 70.9 1.5 5.2E-05 28.2 1.2 44 114-163 23-66 (74)
42 3qt1_I DNA-directed RNA polyme 70.8 3 0.0001 30.0 2.9 36 41-79 21-56 (133)
43 2ckl_A Polycomb group ring fin 70.7 0.85 2.9E-05 31.1 -0.0 33 116-153 15-48 (108)
44 3fl2_A E3 ubiquitin-protein li 70.5 0.85 2.9E-05 31.9 -0.1 31 117-152 53-83 (124)
45 1bor_A Transcription factor PM 70.4 2.3 8E-05 25.2 1.9 13 74-86 23-35 (56)
46 2ep4_A Ring finger protein 24; 70.2 0.74 2.5E-05 28.9 -0.4 36 116-153 15-50 (74)
47 2xeu_A Ring finger protein 4; 70.1 0.7 2.4E-05 27.9 -0.6 37 117-153 4-42 (64)
48 3qt1_I DNA-directed RNA polyme 68.9 2 6.7E-05 31.0 1.6 31 113-143 21-56 (133)
49 3h0g_I DNA-directed RNA polyme 68.9 2.8 9.4E-05 29.2 2.3 28 116-143 4-36 (113)
50 1wff_A Riken cDNA 2810002D23 p 68.7 2 7E-05 28.4 1.5 30 115-147 24-53 (85)
51 1x4j_A Ring finger protein 38; 68.6 1.1 3.9E-05 28.2 0.2 35 116-153 23-58 (75)
52 1jm7_B BARD1, BRCA1-associated 68.4 2 7E-05 29.6 1.6 33 116-153 22-55 (117)
53 2ect_A Ring finger protein 126 68.0 1.6 5.5E-05 27.6 0.9 36 116-153 15-50 (78)
54 1chc_A Equine herpes virus-1 r 67.8 1.5 5.2E-05 26.9 0.7 32 116-152 5-37 (68)
55 4ayc_A E3 ubiquitin-protein li 67.8 1.2 3.9E-05 31.9 0.1 32 117-153 54-85 (138)
56 2kiz_A E3 ubiquitin-protein li 67.8 1.4 4.9E-05 27.1 0.6 37 115-153 13-49 (69)
57 2ckl_B Ubiquitin ligase protei 67.7 1.2 4E-05 32.8 0.2 32 117-153 55-87 (165)
58 2y43_A E3 ubiquitin-protein li 67.6 0.96 3.3E-05 30.2 -0.3 32 117-153 23-55 (99)
59 3ztg_A E3 ubiquitin-protein li 66.8 0.87 3E-05 29.9 -0.7 31 117-152 14-45 (92)
60 3vk6_A E3 ubiquitin-protein li 66.8 1.5 5E-05 30.0 0.5 18 114-131 35-52 (101)
61 2ecw_A Tripartite motif-contai 66.6 1.1 3.9E-05 28.6 -0.1 31 117-152 20-50 (85)
62 3knv_A TNF receptor-associated 66.6 0.96 3.3E-05 32.7 -0.5 32 117-153 32-63 (141)
63 2csy_A Zinc finger protein 183 66.4 1.1 3.7E-05 28.7 -0.2 33 116-153 15-47 (81)
64 1twf_I B12.6, DNA-directed RNA 66.1 3 0.0001 29.4 2.1 29 115-143 3-36 (122)
65 1t1h_A Gspef-atpub14, armadill 65.9 1.3 4.4E-05 28.1 0.0 32 117-153 9-40 (78)
66 1vq8_Z 50S ribosomal protein L 65.7 3.9 0.00013 26.9 2.4 31 43-80 26-56 (83)
67 3u5c_f 40S ribosomal protein S 65.1 2.8 9.7E-05 30.7 1.8 30 116-145 118-150 (152)
68 3hct_A TNF receptor-associated 64.1 1.1 3.9E-05 31.0 -0.5 31 117-152 19-49 (118)
69 2ct0_A Non-SMC element 1 homol 64.0 6.5 0.00022 25.1 3.2 21 107-127 43-63 (74)
70 2ea6_A Ring finger protein 4; 63.8 0.98 3.3E-05 27.7 -0.8 38 116-153 15-54 (69)
71 3l11_A E3 ubiquitin-protein li 63.7 2.1 7.1E-05 29.4 0.8 33 117-154 16-48 (115)
72 2js4_A UPF0434 protein BB2007; 63.6 5 0.00017 25.4 2.5 29 115-143 7-36 (70)
73 2hf1_A Tetraacyldisaccharide-1 63.3 4.5 0.00015 25.5 2.3 28 116-143 8-36 (68)
74 3h0g_I DNA-directed RNA polyme 62.3 5.9 0.0002 27.4 3.0 33 44-79 4-36 (113)
75 2pk7_A Uncharacterized protein 61.3 5.7 0.00019 25.1 2.5 28 116-143 8-36 (69)
76 1jm7_A BRCA1, breast cancer ty 60.5 1.9 6.6E-05 29.2 0.2 33 116-153 21-53 (112)
77 1gh9_A 8.3 kDa protein (gene M 59.7 5 0.00017 25.5 2.0 27 44-79 4-30 (71)
78 1wii_A Hypothetical UPF0222 pr 59.2 5 0.00017 26.5 2.0 29 115-143 22-57 (85)
79 2l0b_A E3 ubiquitin-protein li 58.2 1.6 5.4E-05 28.8 -0.6 35 117-153 41-75 (91)
80 1rmd_A RAG1; V(D)J recombinati 57.8 2 6.9E-05 29.5 -0.1 32 117-153 24-55 (116)
81 1g25_A CDK-activating kinase a 56.9 1.6 5.5E-05 26.6 -0.7 34 117-151 4-38 (65)
82 1twf_L ABC10-alpha, DNA-direct 55.9 3.6 0.00012 26.1 0.8 24 117-141 29-53 (70)
83 3hcs_A TNF receptor-associated 55.5 2 6.8E-05 31.7 -0.5 31 117-152 19-49 (170)
84 3arc_T Photosystem II reaction 53.2 20 0.00069 18.9 3.3 17 179-195 6-22 (32)
85 1v87_A Deltex protein 2; ring- 53.0 2.1 7.3E-05 29.2 -0.7 40 72-131 58-97 (114)
86 2jny_A Uncharacterized BCR; st 52.5 8.8 0.0003 24.1 2.3 29 115-143 9-38 (67)
87 3iz6_X 40S ribosomal protein S 51.6 14 0.00048 24.3 3.2 32 45-82 37-68 (86)
88 2yww_A Aspartate carbamoyltran 51.4 7.2 0.00025 28.5 1.9 33 43-79 104-143 (149)
89 3m7n_A Putative uncharacterize 51.2 7.2 0.00025 29.2 2.0 23 117-141 141-164 (179)
90 2xzm_9 RPS31E; ribosome, trans 49.7 6.7 0.00023 29.9 1.6 29 116-145 113-143 (189)
91 2xzm_6 RPS27E; ribosome, trans 48.0 10 0.00036 24.7 2.1 31 45-81 33-63 (81)
92 2kdx_A HYPA, hydrogenase/ureas 47.3 30 0.001 23.8 4.7 48 22-78 41-99 (119)
93 1z6u_A NP95-like ring finger p 46.9 3.9 0.00013 29.7 -0.1 32 117-153 79-110 (150)
94 2jx1_A Myelin transcription fa 46.7 9.4 0.00032 20.2 1.4 13 1-13 1-13 (31)
95 2ecl_A Ring-box protein 2; RNF 46.5 3.9 0.00013 26.2 -0.2 22 132-153 41-62 (81)
96 1dl6_A Transcription factor II 45.6 14 0.00048 22.3 2.3 26 116-141 11-38 (58)
97 4ic3_A E3 ubiquitin-protein li 45.3 12 0.00042 23.3 2.2 38 117-159 25-63 (74)
98 2k5c_A Uncharacterized protein 45.1 10 0.00036 24.7 1.7 21 3-25 10-31 (95)
99 1qf8_A Casein kinase II; casei 45.0 45 0.0015 25.1 5.5 38 41-78 103-143 (182)
100 2kpi_A Uncharacterized protein 42.3 18 0.00063 21.6 2.5 26 115-142 9-37 (56)
101 3nw0_A Non-structural maintena 41.8 20 0.00069 28.1 3.3 48 77-126 180-227 (238)
102 1pg5_B Aspartate carbamoyltran 41.6 14 0.00048 27.5 2.2 35 43-78 113-152 (168)
103 1qxf_A GR2, 30S ribosomal prot 41.4 30 0.001 21.5 3.4 32 44-81 7-38 (66)
104 1wfe_A Riken cDNA 2310008M20 p 41.2 30 0.001 22.7 3.6 44 42-97 23-66 (86)
105 4fyy_B Aspartate carbamoyltran 41.0 15 0.0005 27.0 2.2 37 43-79 105-145 (153)
106 4a0k_B E3 ubiquitin-protein li 41.0 5.7 0.0002 27.8 0.0 24 130-153 75-98 (117)
107 1x4v_A Hypothetical protein LO 40.1 16 0.00053 22.6 1.9 41 44-96 12-52 (63)
108 2yw8_A RUN and FYVE domain-con 39.9 19 0.00065 23.1 2.5 39 39-86 14-52 (82)
109 1joc_A EEA1, early endosomal a 39.9 27 0.00093 24.4 3.5 37 41-86 66-102 (125)
110 3t7l_A Zinc finger FYVE domain 39.9 11 0.00038 24.8 1.3 38 114-153 18-56 (90)
111 2knc_B Integrin beta-3; transm 38.7 47 0.0016 21.3 4.2 29 170-198 10-38 (79)
112 1x4u_A Zinc finger, FYVE domai 37.7 22 0.00074 23.0 2.5 37 40-85 10-46 (84)
113 4dgl_A Casein kinase II subuni 37.6 62 0.0021 25.0 5.4 38 41-78 103-143 (215)
114 3j20_W 30S ribosomal protein S 36.7 39 0.0013 20.8 3.3 31 45-81 16-46 (63)
115 1z2q_A LM5-1; membrane protein 36.4 24 0.00081 22.8 2.5 37 41-86 18-54 (84)
116 3a43_A HYPD, hydrogenase nicke 36.1 53 0.0018 23.3 4.6 37 22-60 39-84 (139)
117 1nui_A DNA primase/helicase; z 35.4 21 0.00073 27.8 2.6 23 117-142 15-42 (255)
118 2xzf_A Formamidopyrimidine-DNA 35.2 17 0.00058 29.1 1.9 24 117-140 243-269 (271)
119 1wys_A Riken cDNA 2310008M20 p 34.6 43 0.0015 21.4 3.4 43 45-99 15-57 (75)
120 2be7_D Aspartate carbamoyltran 33.9 17 0.00057 26.7 1.5 35 42-79 103-144 (153)
121 1ee8_A MUTM (FPG) protein; bet 33.7 20 0.00069 28.6 2.2 13 117-129 236-248 (266)
122 1k82_A Formamidopyrimidine-DNA 33.3 19 0.00065 28.7 2.0 13 117-129 241-253 (268)
123 1k81_A EIF-2-beta, probable tr 33.2 33 0.0011 18.5 2.3 25 118-142 2-30 (36)
124 3u6p_A Formamidopyrimidine-DNA 32.9 19 0.00064 28.9 1.9 13 117-129 246-258 (273)
125 1rh5_B Preprotein translocase 32.7 60 0.0021 20.6 3.9 23 177-199 41-63 (74)
126 2yho_A E3 ubiquitin-protein li 32.4 27 0.00091 22.1 2.2 38 117-159 19-57 (79)
127 1odh_A MGCM1; transcription fa 32.1 13 0.00043 27.5 0.6 21 115-141 109-131 (174)
128 4ayb_P DNA-directed RNA polyme 32.1 22 0.00077 20.6 1.6 29 51-82 8-36 (48)
129 1k3x_A Endonuclease VIII; hydr 32.0 21 0.00071 28.4 2.0 13 117-129 235-247 (262)
130 2y1n_A E3 ubiquitin-protein li 32.0 16 0.00056 30.9 1.4 33 116-153 332-364 (389)
131 3h0g_L DNA-directed RNA polyme 31.2 16 0.00053 22.6 0.9 25 117-142 22-47 (63)
132 3mp7_B Preprotein translocase 30.9 92 0.0031 18.9 4.7 21 177-197 37-57 (61)
133 3t6p_A Baculoviral IAP repeat- 30.0 20 0.00067 29.8 1.6 25 75-128 313-338 (345)
134 3pwf_A Rubrerythrin; non heme 29.2 67 0.0023 23.7 4.3 23 45-77 139-161 (170)
135 3dpl_R Ring-box protein 1; ubi 27.7 12 0.00041 25.4 -0.1 24 130-153 64-87 (106)
136 2akl_A PHNA-like protein PA012 27.4 30 0.001 24.7 1.9 29 43-79 26-54 (138)
137 3arc_J Photosystem II reaction 27.1 85 0.0029 17.3 3.4 16 181-196 19-34 (40)
138 3u5c_b RP61, YS20, 40S ribosom 26.8 54 0.0018 21.3 2.9 31 45-81 35-65 (82)
139 2jz8_A Uncharacterized protein 26.5 46 0.0016 21.9 2.5 42 41-83 21-62 (87)
140 1vk6_A NADH pyrophosphatase; 1 26.1 69 0.0024 25.3 4.1 28 115-142 106-134 (269)
141 3na7_A HP0958; flagellar bioge 25.6 44 0.0015 26.2 2.8 62 16-79 167-232 (256)
142 2jvm_A Uncharacterized protein 25.5 44 0.0015 21.6 2.3 40 41-81 25-65 (80)
143 2csz_A Synaptotagmin-like prot 24.8 23 0.0008 22.7 0.9 21 67-87 40-60 (76)
144 2f9y_B Acetyl-coenzyme A carbo 24.7 14 0.00047 30.2 -0.3 31 113-143 21-53 (304)
145 2lk9_A Bone marrow stromal ant 24.5 89 0.003 16.6 3.1 10 191-200 22-31 (35)
146 2kvh_A Zinc finger and BTB dom 23.3 36 0.0012 15.3 1.3 10 70-79 4-13 (27)
147 4esj_A Type-2 restriction enzy 22.9 55 0.0019 25.8 2.8 45 34-85 26-72 (257)
148 1y02_A CARP2, FYVE-ring finger 22.8 37 0.0013 23.7 1.6 36 43-87 18-53 (120)
149 2jyd_A F5 domain of myelin tra 22.6 38 0.0013 19.5 1.4 12 2-13 10-21 (46)
150 3v43_A Histone acetyltransfera 22.0 66 0.0023 21.7 2.9 37 113-150 53-94 (112)
151 2co8_A NEDD9 interacting prote 21.8 37 0.0013 21.4 1.4 11 117-127 16-26 (82)
152 2e72_A POGO transposable eleme 21.7 35 0.0012 19.8 1.1 33 114-153 10-42 (49)
153 2ecg_A Baculoviral IAP repeat- 21.7 30 0.001 21.4 0.9 37 117-158 26-63 (75)
154 2zw3_A GAP junction beta-2 pro 21.4 1.5E+02 0.0052 22.9 5.1 45 156-200 173-217 (226)
155 2kvf_A Zinc finger and BTB dom 21.2 41 0.0014 15.2 1.3 10 70-79 4-13 (28)
156 2elx_A Zinc finger protein 406 20.9 47 0.0016 16.0 1.5 13 68-80 6-18 (35)
157 1p7a_A BF3, BKLF, kruppel-like 20.7 42 0.0014 16.5 1.3 14 67-80 9-22 (37)
158 1l1o_C Replication protein A 7 20.5 52 0.0018 24.4 2.2 29 44-78 43-71 (181)
159 1lv3_A Hypothetical protein YA 20.4 23 0.00077 22.3 0.1 13 115-127 8-20 (68)
160 1vfy_A Phosphatidylinositol-3- 20.1 41 0.0014 20.9 1.3 19 67-85 25-43 (73)
161 2fiy_A Protein FDHE homolog; F 20.0 55 0.0019 26.7 2.4 34 117-150 183-231 (309)
162 2els_A Zinc finger protein 406 20.0 49 0.0017 16.2 1.5 14 67-80 7-20 (36)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.67 E-value=5.4e-18 Score=108.23 Aligned_cols=42 Identities=31% Similarity=0.817 Sum_probs=39.2
Q ss_pred ccCCCCCCCCceeEecCCcceeEe-c--ccccccccccccCcCCC
Q 043865 114 MHGARRPACGSCVERKEGCRVMYC-R--CKTSFCYECGGNLKSAS 155 (203)
Q Consensus 114 ~~~k~CP~C~~~iek~~GCnhm~C-~--C~~~FC~~C~~~~~~~~ 155 (203)
.++|+||+|+++|||++|||||+| + |+++|||.|+++|+.++
T Consensus 4 ~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 4 ANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 578999999999999999999999 4 99999999999999764
No 2
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.58 E-value=1.3e-17 Score=114.45 Aligned_cols=76 Identities=29% Similarity=0.576 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHhhcc-CCCceeCCCCCCCceeeecCccccCCCCceeCCCccccccccCCcCC---CCCCccccccc
Q 043865 23 PSNLFSKWCDVLCEDYVL-GFERSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCFQCKVAW---HAGYRCEESGN 98 (203)
Q Consensus 23 ~~e~~~~y~~~~~~~~i~-~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~---H~~~~C~~~~~ 98 (203)
+++++++|++++.+.+|. +++++||| +|+++++.++. ...++||.|++.||+.|+.+| |.|.+|++++.
T Consensus 3 s~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~~-----~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~ 75 (86)
T 2ct7_A 3 SGSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYERE-----QLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQN 75 (86)
T ss_dssp CCCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCCS-----CSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecCC-----CCceEeCCCCCccccccCCchhhcCCCCChHHHHH
Confidence 456788999999999996 88899999 99999987654 567999999999999999999 99999999998
Q ss_pred cccchhH
Q 043865 99 LRDWNDI 105 (203)
Q Consensus 99 ~~~~~d~ 105 (203)
|..++|.
T Consensus 76 w~~~n~~ 82 (86)
T 2ct7_A 76 WKRMNSG 82 (86)
T ss_dssp HHHHHTC
T ss_pred HHHhCcc
Confidence 8766554
No 3
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.49 E-value=4.9e-16 Score=105.12 Aligned_cols=70 Identities=26% Similarity=0.562 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHHHHhhccCCCceeCCCCCCCceeeecCccccCCCCceeCC-----CccccccccCCcCCCCCCcccc
Q 043865 21 MIPSNLFSKWCDVLCEDYVLGFERSYCPNRNCMALVVNEGEINYGTLKKARCP-----NCKQWFCFQCKVAWHAGYRCEE 95 (203)
Q Consensus 21 ~l~~e~~~~y~~~~~~~~i~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~-----~C~~~~C~~C~~~~H~~~~C~~ 95 (203)
+|++++++||++++.+.++...+.+|||+|+|++++..++. ...++|+ .|++.||+.|+.+||+ .+|++
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~C~~~v~~~~~-----~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEPD-----QRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSSCCCCCCCCSC-----TTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCCCCcccEECCC-----CCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 68889999999999999997556999999999999987654 5679998 9999999999999999 99986
Q ss_pred c
Q 043865 96 S 96 (203)
Q Consensus 96 ~ 96 (203)
.
T Consensus 76 ~ 76 (80)
T 2jmo_A 76 V 76 (80)
T ss_dssp C
T ss_pred c
Confidence 4
No 4
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.78 E-value=2.3e-06 Score=57.24 Aligned_cols=45 Identities=29% Similarity=0.654 Sum_probs=39.8
Q ss_pred ccCCCCCC--CCceeEecCCcceeEe------cccccccccccccCcCCCCCCC
Q 043865 114 MHGARRPA--CGSCVERKEGCRVMYC------RCKTSFCYECGGNLKSASGCLC 159 (203)
Q Consensus 114 ~~~k~CP~--C~~~iek~~GCnhm~C------~C~~~FC~~C~~~~~~~~~C~~ 159 (203)
...+-||. |+..|...++...++| .|++.||+.|+..|.. ..|.-
T Consensus 23 ~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 23 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred CCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 45788997 9999999999999999 6999999999999988 66754
No 5
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.70 E-value=3.4e-05 Score=52.78 Aligned_cols=40 Identities=18% Similarity=0.370 Sum_probs=37.4
Q ss_pred ccCCcccCCCc--CCHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 043865 2 IECPGVHCDQF--LDLFTCKLMIPSNLFSKWCDVLCEDYVLG 41 (203)
Q Consensus 2 I~CP~~~C~~~--l~~~~i~~~l~~e~~~~y~~~~~~~~i~~ 41 (203)
|+||.++|... +++++++.+|+++++++|++++.+.++++
T Consensus 51 i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~~~~~~~~v~~ 92 (94)
T 1wim_A 51 ISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFERSGPS 92 (94)
T ss_dssp EECSCTTCSSCCEECHHHHHHHSCHHHHHHHHHHHHHSSCSS
T ss_pred ccCccccCCCCCccCHHHHHHHCCHHHHHHHHHHHHHhhhcc
Confidence 78999999999 99999999999999999999999988863
No 6
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.70 E-value=1.8e-05 Score=53.59 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=33.7
Q ss_pred ccCCCCCCCCceeEecCCcceeEe-cccccccccccccC
Q 043865 114 MHGARRPACGSCVERKEGCRVMYC-RCKTSFCYECGGNL 151 (203)
Q Consensus 114 ~~~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~ 151 (203)
.+.+-||+|+..+....+-..++| .|++.||+.|+.+|
T Consensus 23 ~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 23 PKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CCEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 344569999999988888888999 69999999999999
No 7
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.77 E-value=0.0013 Score=41.16 Aligned_cols=40 Identities=30% Similarity=0.821 Sum_probs=33.9
Q ss_pred CCceeCCCCCCCceeeecCccccCCCCceeCCC--ccccccccCCcCCC
Q 043865 42 FERSYCPNRNCMALVVNEGEINYGTLKKARCPN--CKQWFCFQCKVAWH 88 (203)
Q Consensus 42 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~--C~~~~C~~C~~~~H 88 (203)
.+.+.|| .|+..+..++. .+.++|.. |+..||+.|..+|-
T Consensus 4 ~~~k~CP--~C~~~Iek~~G-----CnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 4 ANTKECP--KCHVTIEKDGG-----CNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCCCT--TTCCCCSSCCS-----CCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred ccceECc--CCCCeeEeCCC-----CCcEEECCCCcCCEEeeCcCCCcc
Confidence 4567788 69999887665 88999988 99999999999983
No 8
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=94.71 E-value=0.0014 Score=46.87 Aligned_cols=80 Identities=16% Similarity=0.334 Sum_probs=49.7
Q ss_pred CCCccccccccCCcCC-CCCCccccccccccchhHHHHHHHHhccCCCCCCCCceeEecC--CcceeEeccccccccccc
Q 043865 72 CPNCKQWFCFQCKVAW-HAGYRCEESGNLRDWNDIAFGKLVERMHGARRPACGSCVERKE--GCRVMYCRCKTSFCYECG 148 (203)
Q Consensus 72 C~~C~~~~C~~C~~~~-H~~~~C~~~~~~~~~~d~~~~~~~~~~~~k~CP~C~~~iek~~--GCnhm~C~C~~~FC~~C~ 148 (203)
-..||+.||..|-..| ....+|..-+......+ +..+........||-|...++... +=..+...||+.||+.|.
T Consensus 29 ~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~--l~~l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci 106 (133)
T 4ap4_A 29 STECGHVFCSQCLRDSLKNANTCPTCRKKINHKR--YHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 106 (133)
T ss_dssp EETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC--EEECBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHH
T ss_pred ecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc--ccccccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHH
Confidence 3468999999999988 33446664433211111 000111234567999988876542 223355589999999999
Q ss_pred ccCcC
Q 043865 149 GNLKS 153 (203)
Q Consensus 149 ~~~~~ 153 (203)
.+|..
T Consensus 107 ~~~~~ 111 (133)
T 4ap4_A 107 RDSLK 111 (133)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
No 9
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=89.98 E-value=0.21 Score=37.25 Aligned_cols=68 Identities=16% Similarity=0.353 Sum_probs=36.2
Q ss_pred CceeCCCCCCCceeeecCccc---cCCCCceeCCCccccccccCCcCCCCCCccccccccccchhHHHHHHHHhccCCCC
Q 043865 43 ERSYCPNRNCMALVVNEGEIN---YGTLKKARCPNCKQWFCFQCKVAWHAGYRCEESGNLRDWNDIAFGKLVERMHGARR 119 (203)
Q Consensus 43 ~~~~Cp~~~C~~~~~~~~~~~---~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~d~~~~~~~~~~~~k~C 119 (203)
-.++||+.+|+..+......+ .=....+.||.|+..+ .+....+|....|.. ....|
T Consensus 81 l~v~C~n~GC~~~~~~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~-------------------r~~~C 140 (170)
T 3hcs_A 81 LMVKCPNEGCLHKMELRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHILKDCPR-------------------RQVSC 140 (170)
T ss_dssp SEEECCSTTCCCEEEGGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHHHTCTT-------------------CEEEC
T ss_pred cccCCCCCCCCceecHhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhhhhCCC-------------------CCeEC
Confidence 468999999998876554310 0013345666555544 233333443333432 22457
Q ss_pred CCCCceeEecC
Q 043865 120 PACGSCVERKE 130 (203)
Q Consensus 120 P~C~~~iek~~ 130 (203)
|.|+..+.+.+
T Consensus 141 ~~C~~~~~~~~ 151 (170)
T 3hcs_A 141 DNCAASMAFED 151 (170)
T ss_dssp TTTCCEEEGGG
T ss_pred CCCCCccCHHH
Confidence 77777666543
No 10
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=89.44 E-value=0.13 Score=31.35 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=20.8
Q ss_pred CCCCCCCCceeEecCCcceeEe-cccccc
Q 043865 116 GARRPACGSCVERKEGCRVMYC-RCKTSF 143 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C-~C~~~F 143 (203)
.+.||+|+..+.-...-+.++| +|++.+
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 4789999985543344579999 799874
No 11
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=87.80 E-value=0.18 Score=30.04 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=19.7
Q ss_pred cCCCCCCCCceeEecCCcceeEe-cccccc
Q 043865 115 HGARRPACGSCVERKEGCRVMYC-RCKTSF 143 (203)
Q Consensus 115 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~F 143 (203)
..+.||+|+..+.-...=+.+.| +||+.+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 45789999984433333378999 798643
No 12
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=86.79 E-value=0.5 Score=31.24 Aligned_cols=31 Identities=23% Similarity=0.530 Sum_probs=26.1
Q ss_pred ccCCCCCCCCceeEecCCcceeEe-ccccccc
Q 043865 114 MHGARRPACGSCVERKEGCRVMYC-RCKTSFC 144 (203)
Q Consensus 114 ~~~k~CP~C~~~iek~~GCnhm~C-~C~~~FC 144 (203)
...-.||.|+....+..+-..+.| .|++.|-
T Consensus 25 ~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cccCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 345689999999999988889999 6998774
No 13
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=85.85 E-value=0.14 Score=34.76 Aligned_cols=32 Identities=19% Similarity=0.459 Sum_probs=26.7
Q ss_pred CCCCCCCceeEecCCcceeEe-cccccccccccccCcC
Q 043865 117 ARRPACGSCVERKEGCRVMYC-RCKTSFCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 153 (203)
-.||-|...+. +-+++ .|||.||+.|...|-.
T Consensus 23 ~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~~~ 55 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCPHCSKLCCFSCIRRWLT 55 (100)
T ss_dssp TBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHHH
T ss_pred CCCccCCcccc-----CccccCCCCChhhHHHHHHHHH
Confidence 57999998885 46787 7999999999988853
No 14
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=85.76 E-value=0.54 Score=30.90 Aligned_cols=35 Identities=26% Similarity=0.686 Sum_probs=20.4
Q ss_pred CCCCCCCceeEecCCcceeEe-cccc-----cccccccccCcC
Q 043865 117 ARRPACGSCVERKEGCRVMYC-RCKT-----SFCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C-~C~~-----~FC~~C~~~~~~ 153 (203)
..||.|+..++.+++ +..| .|+. -||-.|++++..
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHHHH
Confidence 356666666666655 4446 4652 256666666543
No 15
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=85.26 E-value=0.86 Score=26.74 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=22.2
Q ss_pred cCCCCCCCCc-eeEecCCcceeEe-cccccc
Q 043865 115 HGARRPACGS-CVERKEGCRVMYC-RCKTSF 143 (203)
Q Consensus 115 ~~k~CP~C~~-~iek~~GCnhm~C-~C~~~F 143 (203)
....||.|+. .+..+..=..+.| .||..+
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 3467999998 7777766678999 688754
No 16
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.16 E-value=0.21 Score=30.55 Aligned_cols=33 Identities=18% Similarity=0.505 Sum_probs=26.0
Q ss_pred CCCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 116 GARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
...||-|...+. +-++-.||+.||+.|...|..
T Consensus 20 ~~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 20 EVICPICLDILQ-----KPVTIDCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCBCTTTCSBCS-----SCEECTTSSEECHHHHHHHHH
T ss_pred CCCCCcCCchhC-----CeEEeCCCCcchHHHHHHHHH
Confidence 357999987765 244558999999999998874
No 17
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=81.82 E-value=0.48 Score=29.24 Aligned_cols=23 Identities=30% Similarity=0.738 Sum_probs=19.5
Q ss_pred ceeCCCccccccccCCcCCCCCC
Q 043865 69 KARCPNCKQWFCFQCKVAWHAGY 91 (203)
Q Consensus 69 ~~~C~~C~~~~C~~C~~~~H~~~ 91 (203)
..+|+.|++.||..|-.-.|+.+
T Consensus 30 ~y~C~~C~~~FC~dCD~fiHe~L 52 (59)
T 1z60_A 30 VYVCAVCQNVFCVDCDVFVHDSL 52 (59)
T ss_dssp EECCTTTTCCBCHHHHHTTTTTS
T ss_pred cEECCccCcCcccchhHHHHhhc
Confidence 36899999999999988888754
No 18
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=80.54 E-value=1.2 Score=29.78 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=32.2
Q ss_pred CCCCceeCCCccccccccCCcCCCCCCccccccccccchhHHHHHHHHhccCCCCCCCCceeEecCCcc
Q 043865 65 GTLKKARCPNCKQWFCFQCKVAWHAGYRCEESGNLRDWNDIAFGKLVERMHGARRPACGSCVERKEGCR 133 (203)
Q Consensus 65 ~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~d~~~~~~~~~~~~k~CP~C~~~iek~~GCn 133 (203)
++...+-|..|++..|.. |-+|. ..++.+.||+|+....+..|.-
T Consensus 31 ~Ge~FVAC~eC~FPvCrp----------CyEYE--------------rkeG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 31 EGDLFVACNECGFPACRP----------CYEYE--------------RREGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp SSSBCCSCSSSCCCCCHH----------HHHHH--------------HHTSCSSCTTTCCCCCCCTTCC
T ss_pred CCCEEEeeeccCChhhHH----------HHHHH--------------HhccCccccccCCccccccCCC
Confidence 346788888888888853 44442 2467789999999988766553
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.69 E-value=0.35 Score=30.37 Aligned_cols=33 Identities=18% Similarity=0.505 Sum_probs=25.9
Q ss_pred CCCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 116 GARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
...||-|...+. +-++-.|||.||+.|...|..
T Consensus 20 ~~~C~IC~~~~~-----~~~~~~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 20 EVICPICLDILQ-----KPVTIDCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCBCTTTCSBCS-----SEEECTTCCEEEHHHHHHHCS
T ss_pred CCEeccCCcccC-----CeEEcCCCChhhHHHHHHHHH
Confidence 357999988765 344458999999999998874
No 20
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=78.88 E-value=0.81 Score=28.64 Aligned_cols=43 Identities=28% Similarity=0.488 Sum_probs=30.4
Q ss_pred cCCCCCCCCceeEecCCcceeEecccccccccccccCcCCCCCCCCcCC
Q 043865 115 HGARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKSASGCLCKEKG 163 (203)
Q Consensus 115 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~~~~C~~~~~~ 163 (203)
...+|..|+..+... -+.|+|+..||-.-.-+ ..+.|+..++.
T Consensus 14 ~~~rC~~C~kkvgl~----~f~CrCg~~FC~~HRy~--e~H~C~fDyk~ 56 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT----GFMCRCGTTFCGSHRYP--EVHGCTFDFKS 56 (64)
T ss_dssp SCCCCTTTCCCCCTT----CEECSSSCEECTTTCST--TTTTCCCCCSC
T ss_pred cCCcChhhCCccCcc----CEEeecCCEeccccCCc--ccCCCCchhhH
Confidence 447899999988766 48999999999865433 33446655543
No 21
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=77.90 E-value=0.52 Score=27.73 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=25.8
Q ss_pred CCCCCCCceeEecCCcceeEe-cccccccccccccCcC
Q 043865 117 ARRPACGSCVERKEGCRVMYC-RCKTSFCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 153 (203)
..||-|...++..+ ..+.- .|++.||..|...|..
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~~C~H~f~~~Ci~~w~~ 41 (55)
T 1iym_A 6 VECAVCLAELEDGE--EARFLPRCGHGFHAECVDMWLG 41 (55)
T ss_dssp CCCTTTCCCCCTTS--CCEECSSSCCEECTTHHHHTTT
T ss_pred CcCccCCccccCCC--ceEECCCCCCcccHHHHHHHHH
Confidence 57888887775443 23444 4999999999999875
No 22
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=77.79 E-value=1.5 Score=29.79 Aligned_cols=35 Identities=23% Similarity=0.657 Sum_probs=29.6
Q ss_pred CCCCCCCceeEecCCcceeEe-ccccc-----ccccccccCcC
Q 043865 117 ARRPACGSCVERKEGCRVMYC-RCKTS-----FCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C-~C~~~-----FC~~C~~~~~~ 153 (203)
..||.|+..++.++| +.+| .|+.. +|-.|++++..
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred ccCccCCCcceecCC--EEECccccchhhccccCcchhhHHHH
Confidence 789999999999988 7789 79855 58899888775
No 23
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=77.77 E-value=0.8 Score=29.49 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=28.9
Q ss_pred CCCCCCCCceeEecCCcceeEecccccccccccccCcCCCCCCCCcC
Q 043865 116 GARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKSASGCLCKEK 162 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~~~~C~~~~~ 162 (203)
..+|..|+..++..+ +.|+|+..||-.-.- ...+.|..-++
T Consensus 25 ~nRC~~CrKkvgL~g----f~CrCg~~FCs~HRy--~e~H~C~fDyk 65 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTG----FDCRCGNLFCGLHRY--SDKHNCPYDYK 65 (74)
T ss_dssp TTBCSSSCCBCGGGC----EECTTSCEECSSSCS--TTTTTCCCCGG
T ss_pred CCcChhhCCcccccC----eecCCCCEechhcCC--CccCCCcchhh
Confidence 458999999998874 899999999975432 23334554443
No 24
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=77.52 E-value=1.4 Score=27.95 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=23.5
Q ss_pred cCCCCCCCCceeEecCCcceeEe-cccccc
Q 043865 115 HGARRPACGSCVERKEGCRVMYC-RCKTSF 143 (203)
Q Consensus 115 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~F 143 (203)
.+-.||.|+...+-..+...+.| .|+..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 34689999999998888888999 687654
No 25
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.50 E-value=0.47 Score=28.17 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=25.1
Q ss_pred CCCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 116 GARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
...||-|...+... +.-.||+.||..|...|..
T Consensus 15 ~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 15 EASCSVCLEYLKEP-----VIIECGHNFCKACITRWWE 47 (58)
T ss_dssp CCBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHHTT
T ss_pred CCCCccCCcccCcc-----EeCCCCCccCHHHHHHHHH
Confidence 35799998877542 3347999999999999843
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.20 E-value=1.4 Score=28.07 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=11.4
Q ss_pred cCCCCCCCCceeEec
Q 043865 115 HGARRPACGSCVERK 129 (203)
Q Consensus 115 ~~k~CP~C~~~iek~ 129 (203)
+...||.|+..+...
T Consensus 58 ~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 58 GESSCPVCRISYQPE 72 (85)
T ss_dssp SCCCCTTTCCSSCSS
T ss_pred CCCcCCCCCCccCHH
Confidence 457899999887653
No 27
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.00 E-value=0.56 Score=29.39 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=24.9
Q ss_pred CCCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 116 GARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
...||-|...+.. -++-.|+|.||+.|...|..
T Consensus 15 ~~~C~IC~~~~~~-----~~~~~CgH~fC~~Ci~~~~~ 47 (71)
T 2d8t_A 15 VPECAICLQTCVH-----PVSLPCKHVFCYLCVKGASW 47 (71)
T ss_dssp CCBCSSSSSBCSS-----EEEETTTEEEEHHHHHHCTT
T ss_pred CCCCccCCcccCC-----CEEccCCCHHHHHHHHHHHH
Confidence 3579999877632 24558999999999988864
No 28
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.94 E-value=0.43 Score=31.02 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=25.0
Q ss_pred CCCCCCCCceeEecCCcceeEecccccccccccccCc
Q 043865 116 GARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLK 152 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 152 (203)
...||-|...+...+. .-+.-.|||.||..|...|.
T Consensus 15 ~~~C~IC~~~~~~~~~-~~~~~~CgH~fC~~Ci~~~~ 50 (88)
T 2ct2_A 15 VLECPICMESFTEEQL-RPKLLHCGHTICRQCLEKLL 50 (88)
T ss_dssp CCBCTTTCCBCCTTSS-CEEECSSSCEEEHHHHHHHH
T ss_pred CCCCccCCccccccCC-CeEECCCCChhhHHHHHHHH
Confidence 3579999887754321 12333799999999988874
No 29
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=75.45 E-value=1 Score=28.14 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=29.6
Q ss_pred cCCCCCCCCceeEecCCcceeEecccccccccccccCcCCCCCCCCcCC
Q 043865 115 HGARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKSASGCLCKEKG 163 (203)
Q Consensus 115 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~~~~C~~~~~~ 163 (203)
...+|..|+..+... -++|+|+..||-.-.-+ ..+.|...++.
T Consensus 14 ~~~rC~~C~kkvgl~----~f~CrCg~~FC~~HR~~--e~H~C~fDyk~ 56 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM----GFKCKCGSTFCGSHRYP--EKHECSFDFKE 56 (64)
T ss_dssp CSCSCTTTCCCCTTS----CEECTTSCEECSSSCSS--TTTTCCCCCSC
T ss_pred cCCcChhhCCccccc----CeEeecCCEecccCCCc--cccCCCcchhH
Confidence 346899999887665 48999999999864333 33346555443
No 30
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=75.08 E-value=0.6 Score=29.56 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=25.1
Q ss_pred CCCCCCCceeEecCCcceeEec-ccccccccccccCcC
Q 043865 117 ARRPACGSCVERKEGCRVMYCR-CKTSFCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~-C~~~FC~~C~~~~~~ 153 (203)
..||-|...+. +-++-. ||+.||+.|...|..
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~ 48 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTALL 48 (74)
T ss_dssp GSCSSSCCCCT-----TCEECSSSCCEECTTHHHHHHH
T ss_pred CCCcCCChHHh-----CCeEcCCCCCHHHHHHHHHHHH
Confidence 57999987764 356666 999999999888864
No 31
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=74.87 E-value=2.2 Score=30.57 Aligned_cols=48 Identities=21% Similarity=0.443 Sum_probs=35.0
Q ss_pred ccCCcccCCC---cCCHHHHhhcCCHHHHHHHHHHHHHhhccCCCceeCCCCCCCceeeecCc
Q 043865 2 IECPGVHCDQ---FLDLFTCKLMIPSNLFSKWCDVLCEDYVLGFERSYCPNRNCMALVVNEGE 61 (203)
Q Consensus 2 I~CP~~~C~~---~l~~~~i~~~l~~e~~~~y~~~~~~~~i~~~~~~~Cp~~~C~~~~~~~~~ 61 (203)
.+||. |+. .+....++++|.++..+ +...++.+|++|+|.-++...+.
T Consensus 2 ~~CP~--Cg~~G~~V~~~Tvk~ll~~~~~~----------~~~~~y~~C~~~~C~VvYf~~~~ 52 (130)
T 2hu9_A 2 MRCPE--CSTEGWRVLPLTVGAHVKEGLWS----------KIKGDFYFCSLESCEVVYFNEQT 52 (130)
T ss_dssp CBCTT--TCCBCEEECHHHHHHHBCGGGGG----------GCCSCEEECCCTTCSEEEECSSC
T ss_pred CcCCC--CCCcCcCccHHHHHHHhhHHHhc----------cCCCCEEeECCCCCCEEEECCCc
Confidence 36884 864 78899999988766542 33457899999999977764443
No 32
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=74.86 E-value=0.71 Score=29.91 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=24.7
Q ss_pred CCCCCCCceeEecCCcceeEecccccccccccccCc
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLK 152 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 152 (203)
..||-|.-.+... .-..+.|.|||.||..|+..+.
T Consensus 12 ~~CpICle~~~~~-d~~~~p~~CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 12 VECPLCMEPLEID-DINFFPCTCGYQICRFCWHRIR 46 (78)
T ss_dssp CBCTTTCCBCCTT-TTTCCSSTTSCCCCHHHHHHHT
T ss_pred CcCCccCccCccc-cccccccCCCCCcCHHHHHHHH
Confidence 5799999877432 2233446799999999987764
No 33
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=73.36 E-value=4.2 Score=26.66 Aligned_cols=64 Identities=25% Similarity=0.395 Sum_probs=34.7
Q ss_pred ccccccCCcCCCCCCccccccccccchhHHHHHHHHhccCCCCCCCCceeEecCCcceeEecccccccccccccCcCCCC
Q 043865 77 QWFCFQCKVAWHAGYRCEESGNLRDWNDIAFGKLVERMHGARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKSASG 156 (203)
Q Consensus 77 ~~~C~~C~~~~H~~~~C~~~~~~~~~~d~~~~~~~~~~~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~~~~ 156 (203)
...|++|...-|....|.+.. +|.+|+..-.....|.. .=...+||.|++.=.-...
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~~--------------------rcY~c~~~gh~~~~c~~---p~~~~~CYnCG~~GH~~rd 61 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSIW--------------------RAYILVDDNEKAKPKVL---PFHTIYCYNCGGKGHFGDD 61 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGGT--------------------CCCCBC----------------CCCBCSSSSCBSSCGGG
T ss_pred cCCCCCCCCCCCccccCCCcc--------------------cccccccCCcccccccC---CCCCCeecccCCCCcCccc
Confidence 467899999999988887531 35555543211111110 1145799999988665555
Q ss_pred CCCCcCC
Q 043865 157 CLCKEKG 163 (203)
Q Consensus 157 C~~~~~~ 163 (203)
|+....+
T Consensus 62 C~~~r~s 68 (83)
T 3nyb_B 62 CKEKRSS 68 (83)
T ss_dssp CSSCCSC
T ss_pred CCccccC
Confidence 7665543
No 34
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.68 E-value=0.62 Score=29.25 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=22.8
Q ss_pred CCCCCCCceeEecCCcceeEe-cccccccccccccCc
Q 043865 117 ARRPACGSCVERKEGCRVMYC-RCKTSFCYECGGNLK 152 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~ 152 (203)
..||-|...+.. -++- .|||.||+.|...|.
T Consensus 16 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 47 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTITECLHTFCKSCIVRHF 47 (72)
T ss_dssp GSCTTTSSCCSS-----CEECSSSCCEECHHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEECCCCCHHHHHHHHHHH
Confidence 579999877653 4555 688888888877764
No 35
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=71.75 E-value=1.2 Score=25.93 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=24.6
Q ss_pred CCCCCCCceeEecCCcceeEe-cccccccccccccCcC
Q 043865 117 ARRPACGSCVERKEGCRVMYC-RCKTSFCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 153 (203)
..||-|...+...+ +.+.- .|++.||..|...|..
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~~CgH~fc~~Ci~~~~~ 41 (55)
T 2ecm_A 6 SGCPICLEDIHTSR--VVAHVLPCGHLLHRTCYEEMLK 41 (55)
T ss_dssp CSCTTTCCCCCTTT--SCEEECTTSCEEETTHHHHHHH
T ss_pred CcCcccChhhcCCC--cCeEecCCCCcccHHHHHHHHH
Confidence 56888887664221 23445 7999999999988853
No 36
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.67 E-value=0.88 Score=28.22 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=24.7
Q ss_pred CCCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 116 GARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
...||-|...... +.=.|++.||+.|...|..
T Consensus 15 ~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 15 EEECCICMDGRAD------LILPCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCCSSSCCSCCS------EEETTTEEECHHHHHHSSC
T ss_pred CCCCeeCCcCccC------cccCCCCcccHHHHHHHHH
Confidence 4579999876543 4447999999999988865
No 37
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=71.55 E-value=1.7 Score=31.91 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=23.3
Q ss_pred ceeCCCCCCCceeeecCccccCCCCceeCCCccccccc
Q 043865 44 RSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCF 81 (203)
Q Consensus 44 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 81 (203)
...||++.|+..+..... .....|..|+.++++
T Consensus 118 ~~~c~~~~cg~g~fma~h-----~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANH-----KDRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEEC-----SSCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEeccc-----CCCcccCCCceEEEe
Confidence 477998889875444444 347888888888765
No 38
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=71.14 E-value=0.65 Score=29.47 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=25.0
Q ss_pred CCCCCCCceeEecCCcceeEecccccccccccccCcCC
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKSA 154 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~~ 154 (203)
..||-|...+.. -++-.|||.||..|...|...
T Consensus 13 ~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSLDCGHSLCRACITVSNKE 45 (79)
T ss_dssp CEETTTTEECSS-----CCCCSSSCCCCHHHHSCCCCC
T ss_pred CCCcCCCcccCC-----eeECCCCCHHHHHHHHHHHHh
Confidence 569999877643 344489999999999987653
No 39
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.10 E-value=0.66 Score=28.51 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=24.4
Q ss_pred CCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
..||-|...+.. -++-.||+.||+.|...|..
T Consensus 16 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 16 YKCEKCHLVLCS-----PKQTECGHRFCESCMAALLS 47 (66)
T ss_dssp EECTTTCCEESS-----CCCCSSSCCCCHHHHHHHHT
T ss_pred CCCCCCChHhcC-----eeECCCCCHHHHHHHHHHHH
Confidence 569999887743 23337999999999998863
No 40
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=70.96 E-value=0.58 Score=29.05 Aligned_cols=38 Identities=18% Similarity=0.417 Sum_probs=26.2
Q ss_pred CCCCCCCCceeEec-CCcceeEe-cccccccccccccCcC
Q 043865 116 GARRPACGSCVERK-EGCRVMYC-RCKTSFCYECGGNLKS 153 (203)
Q Consensus 116 ~k~CP~C~~~iek~-~GCnhm~C-~C~~~FC~~C~~~~~~ 153 (203)
...||-|...+... ++=..+.- .||+.||+.|...|-.
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 49 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 49 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH
Confidence 45799998877653 22233334 7999999999888753
No 41
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=70.89 E-value=1.5 Score=28.16 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=30.6
Q ss_pred ccCCCCCCCCceeEecCCcceeEecccccccccccccCcCCCCCCCCcCC
Q 043865 114 MHGARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKSASGCLCKEKG 163 (203)
Q Consensus 114 ~~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~~~~C~~~~~~ 163 (203)
....+|..|+..+... -+.|+|+..||-.-.- ...+.|...++.
T Consensus 23 ~~~~RC~~C~kkvgL~----~f~CrCg~~FCs~HRy--~e~H~C~fDyk~ 66 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT----GFKCRCGSTFCGTHRY--PESHECQFDFKG 66 (74)
T ss_dssp CCCCBCSSSCCBCTTT----CEECTTSCEECTTTCS--TTTSCCCSCTTS
T ss_pred ccCccchhhcCccccc----ceEeccCCEeccccCC--CcCCCCcCchhH
Confidence 3457899999888776 4899999999975433 333446655543
No 42
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=70.76 E-value=3 Score=30.00 Aligned_cols=36 Identities=11% Similarity=0.232 Sum_probs=25.0
Q ss_pred CCCceeCCCCCCCceeeecCccccCCCCceeCCCccccc
Q 043865 41 GFERSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWF 79 (203)
Q Consensus 41 ~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~ 79 (203)
..+..+|| .|++.+.+...- ..+...+.|+.|++..
T Consensus 21 ~~~~~FCP--eCgNmL~pked~-~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRFCR--DCNNMLYPREDK-ENNRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCBCT--TTCCBCBCCBCT-TTCCBCCBCSSSCCBC
T ss_pred ccCCeeCC--CCCCEeeECccC-CCceeEEECCCCCCcE
Confidence 45678999 699999876541 1235578898888853
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=70.68 E-value=0.85 Score=31.07 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=26.5
Q ss_pred CCCCCCCCceeEecCCcceeEe-cccccccccccccCcC
Q 043865 116 GARRPACGSCVERKEGCRVMYC-RCKTSFCYECGGNLKS 153 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 153 (203)
.-.||-|...+. +-++- .||+.||+.|...|..
T Consensus 15 ~~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~ 48 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATTIIECLHSFCKTCIVRYLE 48 (108)
T ss_dssp GTBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHHHT
T ss_pred cCCCccCChHHh-----CcCEeCCCCChhhHHHHHHHHH
Confidence 357999988774 36777 8999999999888854
No 44
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=70.49 E-value=0.85 Score=31.93 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=24.1
Q ss_pred CCCCCCCceeEecCCcceeEecccccccccccccCc
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLK 152 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 152 (203)
-.||-|...+. +-++-.|||.||..|...|.
T Consensus 53 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~~ 83 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITTVCQHNVCKDCLDRSF 83 (124)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHHH
T ss_pred CCCCcCChHHc-----CcEEeeCCCcccHHHHHHHH
Confidence 47999988775 34555899999999987775
No 45
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=70.36 E-value=2.3 Score=25.19 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=10.3
Q ss_pred CccccccccCCcC
Q 043865 74 NCKQWFCFQCKVA 86 (203)
Q Consensus 74 ~C~~~~C~~C~~~ 86 (203)
.|++.||..|...
T Consensus 23 ~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 23 PCLHTLCSGCLEA 35 (56)
T ss_dssp TTSCCSBTTTCSS
T ss_pred CCCCcccHHHHcc
Confidence 4899999888754
No 46
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.22 E-value=0.74 Score=28.93 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=24.9
Q ss_pred CCCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 116 GARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
...||-|...+..... .+.-.|++.||+.|...|..
T Consensus 15 ~~~C~IC~~~~~~~~~--~~~~~C~H~f~~~Ci~~~~~ 50 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDE--LGICPCKHAFHRKCLIKWLE 50 (74)
T ss_dssp SCBCSSSCCBCCSSSC--EEEETTTEEEEHHHHHHHHH
T ss_pred CCCCcCCCcccCCCCc--EEEcCCCCEecHHHHHHHHH
Confidence 3579999887654432 22337888899999888753
No 47
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=70.07 E-value=0.7 Score=27.91 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCCCCCCceeEecC-Ccce-eEecccccccccccccCcC
Q 043865 117 ARRPACGSCVERKE-GCRV-MYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~-GCnh-m~C~C~~~FC~~C~~~~~~ 153 (203)
..||-|...+.... +=.. +.-.||+.||..|...|-.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 42 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 42 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH
Confidence 35777777665431 1122 3337999999999888753
No 48
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=68.93 E-value=2 Score=30.95 Aligned_cols=31 Identities=10% Similarity=0.126 Sum_probs=23.5
Q ss_pred hccCCCCCCCCceeEec----CCcceeEe-cccccc
Q 043865 113 RMHGARRPACGSCVERK----EGCRVMYC-RCKTSF 143 (203)
Q Consensus 113 ~~~~k~CP~C~~~iek~----~GCnhm~C-~C~~~F 143 (203)
....+.||.|+.+.--. .+.+.+.| .|+|++
T Consensus 21 ~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 35679999999987433 26788999 699976
No 49
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=68.89 E-value=2.8 Score=29.17 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=22.2
Q ss_pred CCCCCCCCceeEec----CCcceeEe-cccccc
Q 043865 116 GARRPACGSCVERK----EGCRVMYC-RCKTSF 143 (203)
Q Consensus 116 ~k~CP~C~~~iek~----~GCnhm~C-~C~~~F 143 (203)
.+.||.|+.+..-. ++.+.+.| .|+|.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 46899999987554 35788999 699977
No 50
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=68.73 E-value=2 Score=28.37 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=23.5
Q ss_pred cCCCCCCCCceeEecCCcceeEecccccccccc
Q 043865 115 HGARRPACGSCVERKEGCRVMYCRCKTSFCYEC 147 (203)
Q Consensus 115 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C 147 (203)
...+|..|+..+... +-+.|+|+..||-.-
T Consensus 24 ~~~rC~~C~kkvgl~---~~f~CrCg~~FC~~H 53 (85)
T 1wff_A 24 IMKHCFLCGKKTGLA---TSFECRCGNNFCASH 53 (85)
T ss_dssp CCCBCSSSCCBCSSS---SCEECTTCCEECTTT
T ss_pred cCccchhhCCeeccc---CCeEcCCCCEecccC
Confidence 346899999877654 358999999999754
No 51
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.59 E-value=1.1 Score=28.19 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=25.2
Q ss_pred CCCCCCCCceeEecCCcceeEe-cccccccccccccCcC
Q 043865 116 GARRPACGSCVERKEGCRVMYC-RCKTSFCYECGGNLKS 153 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 153 (203)
...||-|...++..+ .+.. .|++.||+.|...|-.
T Consensus 23 ~~~C~IC~~~~~~~~---~~~~l~C~H~fh~~Ci~~w~~ 58 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQ---LLRVLPCNHEFHAKCVDKWLK 58 (75)
T ss_dssp CCEETTTTEECCBTC---EEEEETTTEEEETTHHHHHHH
T ss_pred CCCCeECCcccCCCC---eEEEECCCCHhHHHHHHHHHH
Confidence 357999987765433 3344 6999999999888853
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=68.44 E-value=2 Score=29.61 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=25.8
Q ss_pred CCCCCCCCceeEecCCcceeEe-cccccccccccccCcC
Q 043865 116 GARRPACGSCVERKEGCRVMYC-RCKTSFCYECGGNLKS 153 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 153 (203)
.-.||-|...+. +-++- .|||.||+.|...|..
T Consensus 22 ~~~C~IC~~~~~-----~pv~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 22 LLRCSRCTNILR-----EPVCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TTSCSSSCSCCS-----SCBCCCSSSCCBCTTTGGGGTT
T ss_pred CCCCCCCChHhh-----CccEeCCCCCHHHHHHHHHHhc
Confidence 467999987774 34555 7999999999998865
No 53
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=67.96 E-value=1.6 Score=27.57 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=23.7
Q ss_pred CCCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 116 GARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
...||-|...+.... ..+.-.|++.||+.|...|..
T Consensus 15 ~~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~ 50 (78)
T 2ect_A 15 GLECPVCKEDYALGE--SVRQLPCNHLFHDSCIVPWLE 50 (78)
T ss_dssp SCCCTTTTSCCCTTS--CEEECTTSCEEETTTTHHHHT
T ss_pred CCCCeeCCccccCCC--CEEEeCCCCeecHHHHHHHHH
Confidence 467999987765332 112226888888888887754
No 54
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=67.85 E-value=1.5 Score=26.85 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=21.7
Q ss_pred CCCCCCCCceeEecCCcceeEe-cccccccccccccCc
Q 043865 116 GARRPACGSCVERKEGCRVMYC-RCKTSFCYECGGNLK 152 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~ 152 (203)
...||-|...+.. ...- .||+.||+.|...|.
T Consensus 5 ~~~C~IC~~~~~~-----~~~~~~C~H~fc~~Ci~~~~ 37 (68)
T 1chc_A 5 AERCPICLEDPSN-----YSMALPCLHAFCYVCITRWI 37 (68)
T ss_dssp CCCCSSCCSCCCS-----CEEETTTTEEESTTHHHHHH
T ss_pred CCCCeeCCccccC-----CcEecCCCCeeHHHHHHHHH
Confidence 3579999877642 2233 688888888877764
No 55
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=67.80 E-value=1.2 Score=31.95 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=25.1
Q ss_pred CCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
..||-|.-.+. +-++-.|||.||..|...|..
T Consensus 54 ~~C~iC~~~~~-----~~~~~~CgH~fc~~Ci~~~~~ 85 (138)
T 4ayc_A 54 LQCIICSEYFI-----EAVTLNCAHSFCSYCINEWMK 85 (138)
T ss_dssp SBCTTTCSBCS-----SEEEETTSCEEEHHHHHHHTT
T ss_pred CCCcccCcccC-----CceECCCCCCccHHHHHHHHH
Confidence 46999988764 245568999999999888764
No 56
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=67.79 E-value=1.4 Score=27.09 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=25.3
Q ss_pred cCCCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 115 HGARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 115 ~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
....||-|...++... ..+.-.|++.||+.|...|..
T Consensus 13 ~~~~C~IC~~~~~~~~--~~~~~~C~H~fc~~Ci~~~~~ 49 (69)
T 2kiz_A 13 TEEKCTICLSILEEGE--DVRRLPCMHLFHQVCVDQWLI 49 (69)
T ss_dssp CCCSBTTTTBCCCSSS--CEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCeeCCccccCCC--cEEEeCCCCHHHHHHHHHHHH
Confidence 3467999987664322 223337899999999888753
No 57
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=67.65 E-value=1.2 Score=32.85 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=26.0
Q ss_pred CCCCCCCceeEecCCcceeEe-cccccccccccccCcC
Q 043865 117 ARRPACGSCVERKEGCRVMYC-RCKTSFCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 153 (203)
-.||-|...+. +-++. .|||.||+.|...|-.
T Consensus 55 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~ 87 (165)
T 2ckl_B 55 LMCPICLDMLK-----NTMTTKECLHRFCADCIITALR 87 (165)
T ss_dssp HBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHHHH
T ss_pred CCCcccChHhh-----CcCEeCCCCChhHHHHHHHHHH
Confidence 37999988775 36777 8999999999888754
No 58
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=67.58 E-value=0.96 Score=30.24 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=25.5
Q ss_pred CCCCCCCceeEecCCcceeEe-cccccccccccccCcC
Q 043865 117 ARRPACGSCVERKEGCRVMYC-RCKTSFCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 153 (203)
-.||-|...+.. -++- .|||.||..|...|..
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHT
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHHH
Confidence 579999887752 5666 7999999999888765
No 59
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=66.81 E-value=0.87 Score=29.94 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=24.4
Q ss_pred CCCCCCCceeEecCCcceeEec-ccccccccccccCc
Q 043865 117 ARRPACGSCVERKEGCRVMYCR-CKTSFCYECGGNLK 152 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~-C~~~FC~~C~~~~~ 152 (203)
-.||-|..... +-++-. |||.||..|...|-
T Consensus 14 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~ 45 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTAL 45 (92)
T ss_dssp TEETTTTEECS-----SCEECTTTCCEECHHHHHHHH
T ss_pred CCCCCCChhhc-----CceECCCCCCHHHHHHHHHHH
Confidence 57999997764 346666 99999999988874
No 60
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=66.77 E-value=1.5 Score=30.03 Aligned_cols=18 Identities=28% Similarity=0.384 Sum_probs=14.4
Q ss_pred ccCCCCCCCCceeEecCC
Q 043865 114 MHGARRPACGSCVERKEG 131 (203)
Q Consensus 114 ~~~k~CP~C~~~iek~~G 131 (203)
++.+.||.|+..|++.+-
T Consensus 35 ~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 35 KGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp TTCCBCTTTCCBCSEEEE
T ss_pred ccCCCCcCcCCeeeeeEE
Confidence 445789999999987754
No 61
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=66.60 E-value=1.1 Score=28.56 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=23.5
Q ss_pred CCCCCCCceeEecCCcceeEecccccccccccccCc
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLK 152 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 152 (203)
..||-|...+.. -++-.|+|.||..|...|.
T Consensus 20 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 50 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSADCNHSFCRACITLNY 50 (85)
T ss_dssp TSCTTTCSCCSS-----CEECTTSCCBCHHHHHHHH
T ss_pred CCCcCCChhhCc-----ceeCCCCCHHHHHHHHHHH
Confidence 579999877643 2455799999999988764
No 62
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=66.59 E-value=0.96 Score=32.72 Aligned_cols=32 Identities=22% Similarity=0.487 Sum_probs=25.5
Q ss_pred CCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
-.||-|...+. +-++..||+.||..|...|-.
T Consensus 32 ~~C~IC~~~~~-----~pv~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 32 YLCSACRNVLR-----RPFQAQCGHRYCSFCLASILS 63 (141)
T ss_dssp GBCTTTCSBCS-----SEEECTTSCEEEHHHHHHHGG
T ss_pred cCCCCCChhhc-----CcEECCCCCccCHHHHHHHHh
Confidence 47999998774 336668999999999888864
No 63
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.41 E-value=1.1 Score=28.75 Aligned_cols=33 Identities=18% Similarity=0.398 Sum_probs=24.0
Q ss_pred CCCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 116 GARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
...||-|...+.. .++-.||+.||+.|...|..
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 47 (81)
T 2csy_A 15 PFRCFICRQAFQN-----PVVTKCRHYFCESCALEHFR 47 (81)
T ss_dssp CSBCSSSCSBCCS-----EEECTTSCEEEHHHHHHHHH
T ss_pred CCCCcCCCchhcC-----eeEccCCCHhHHHHHHHHHH
Confidence 3579999887743 34447889999999877753
No 64
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=66.09 E-value=3 Score=29.37 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=22.3
Q ss_pred cCCCCCCCCceeEec----CCcceeEe-cccccc
Q 043865 115 HGARRPACGSCVERK----EGCRVMYC-RCKTSF 143 (203)
Q Consensus 115 ~~k~CP~C~~~iek~----~GCnhm~C-~C~~~F 143 (203)
..+.||.|+.+..-. .+-+.+.| .|+|++
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 357899999877633 56888999 699866
No 65
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=65.87 E-value=1.3 Score=28.07 Aligned_cols=32 Identities=6% Similarity=-0.036 Sum_probs=24.7
Q ss_pred CCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
-.||-|..... +-++-.||+.||..|...|-.
T Consensus 9 ~~C~IC~~~~~-----~Pv~~~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 9 FRCPISLELMK-----DPVIVSTGQTYERSSIQKWLD 40 (78)
T ss_dssp SSCTTTSCCCS-----SEEEETTTEEEEHHHHHHHHT
T ss_pred CCCCCcccccc-----CCEEcCCCCeecHHHHHHHHH
Confidence 57999988764 245558999999999888765
No 66
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=65.66 E-value=3.9 Score=26.89 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=22.7
Q ss_pred CceeCCCCCCCceeeecCccccCCCCceeCCCcccccc
Q 043865 43 ERSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFC 80 (203)
Q Consensus 43 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C 80 (203)
....|| .|+.-...... .....|+.|++.|-
T Consensus 26 ~~y~Cp--~CG~~~v~r~a-----tGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 26 EDHACP--NCGEDRVDRQG-----TGIWQCSYCDYKFT 56 (83)
T ss_dssp SCEECS--SSCCEEEEEEE-----TTEEEETTTCCEEE
T ss_pred ccCcCC--CCCCcceeccC-----CCeEECCCCCCEec
Confidence 466898 59886665554 56789999988765
No 67
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=65.07 E-value=2.8 Score=30.73 Aligned_cols=30 Identities=20% Similarity=0.488 Sum_probs=23.8
Q ss_pred CCCCCC--CCceeEecCCcceeEe-cccccccc
Q 043865 116 GARRPA--CGSCVERKEGCRVMYC-RCKTSFCY 145 (203)
Q Consensus 116 ~k~CP~--C~~~iek~~GCnhm~C-~C~~~FC~ 145 (203)
-+.||+ |+.-+.-..-=|..+| +|++-+++
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 478999 9987766655579999 89988775
No 68
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=64.09 E-value=1.1 Score=31.01 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=24.2
Q ss_pred CCCCCCCceeEecCCcceeEecccccccccccccCc
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLK 152 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 152 (203)
..||-|...+.. -++-.||+.||+.|...|.
T Consensus 19 ~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~ 49 (118)
T 3hct_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSI 49 (118)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHH
T ss_pred CCCCcCChhhcC-----eEECCcCChhhHHHHHHHH
Confidence 479999987752 3555899999999988875
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.97 E-value=6.5 Score=25.11 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=13.0
Q ss_pred HHHHHHhccCCCCCCCCceeE
Q 043865 107 FGKLVERMHGARRPACGSCVE 127 (203)
Q Consensus 107 ~~~~~~~~~~k~CP~C~~~ie 127 (203)
+.+|.+......||.|+...+
T Consensus 43 i~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 43 VAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp HHHHSTTCSSCCCTTTCSCCC
T ss_pred HHHHHHhcCCCCCCCCcCcCC
Confidence 344554444478999887654
No 70
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.84 E-value=0.98 Score=27.68 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=25.6
Q ss_pred CCCCCCCCceeEecCCc-ce-eEecccccccccccccCcC
Q 043865 116 GARRPACGSCVERKEGC-RV-MYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GC-nh-m~C~C~~~FC~~C~~~~~~ 153 (203)
...||-|...+.....- .. +.-.||+.||..|...|..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH
Confidence 35799998877654221 22 3337999999999888853
No 71
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=63.68 E-value=2.1 Score=29.37 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=24.9
Q ss_pred CCCCCCCceeEecCCcceeEecccccccccccccCcCC
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKSA 154 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~~ 154 (203)
-.||-|...+.. -++=.|||.||..|...|...
T Consensus 16 ~~C~iC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~ 48 (115)
T 3l11_A 16 CQCGICMEILVE-----PVTLPCNHTLCKPCFQSTVEK 48 (115)
T ss_dssp HBCTTTCSBCSS-----CEECTTSCEECHHHHCCCCCT
T ss_pred CCCccCCcccCc-----eeEcCCCCHHhHHHHHHHHhH
Confidence 369999877642 333389999999999988753
No 72
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=63.60 E-value=5 Score=25.43 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=21.7
Q ss_pred cCCCCCCCCceeEecCCcceeEe-cccccc
Q 043865 115 HGARRPACGSCVERKEGCRVMYC-RCKTSF 143 (203)
Q Consensus 115 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~F 143 (203)
.+-.||.|+...+-..+=..+.| .|+..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 34679999999888766677888 576554
No 73
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=63.29 E-value=4.5 Score=25.51 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=20.6
Q ss_pred CCCCCCCCceeEecCCcceeEe-cccccc
Q 043865 116 GARRPACGSCVERKEGCRVMYC-RCKTSF 143 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C-~C~~~F 143 (203)
+-.||.|+...+-..+=..+.| .|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4579999998887766667888 576554
No 74
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=62.33 E-value=5.9 Score=27.44 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=23.7
Q ss_pred ceeCCCCCCCceeeecCccccCCCCceeCCCccccc
Q 043865 44 RSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWF 79 (203)
Q Consensus 44 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~ 79 (203)
..+|| .|++.+.+.... +++...+.|+.|++..
T Consensus 4 m~FCp--~Cgn~L~~~~~~-~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCI--ECNNMLYPREDK-VDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCS--SSCCCCEECCCT-TTCCCCEECSSSCCEE
T ss_pred ceeCc--CCCCEeeEcccC-CCCeeEEECCCCCCeE
Confidence 56898 699999876541 1235678999988864
No 75
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=61.27 E-value=5.7 Score=25.10 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=20.8
Q ss_pred CCCCCCCCceeEecCCcceeEe-cccccc
Q 043865 116 GARRPACGSCVERKEGCRVMYC-RCKTSF 143 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C-~C~~~F 143 (203)
+-.||.|+...+-..+=..+.| .|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4579999998887766567888 576554
No 76
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.51 E-value=1.9 Score=29.18 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=24.2
Q ss_pred CCCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 116 GARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
...||-|...+.. -++-.|||.||+.|...|..
T Consensus 21 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~ 53 (112)
T 1jm7_A 21 ILECPICLELIKE-----PVSTKCDHIFCKFCMLKLLN 53 (112)
T ss_dssp HTSCSSSCCCCSS-----CCBCTTSCCCCSHHHHHHHH
T ss_pred CCCCcccChhhcC-----eEECCCCCHHHHHHHHHHHH
Confidence 3579999887642 23347999999999887754
No 77
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=59.70 E-value=5 Score=25.54 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=20.8
Q ss_pred ceeCCCCCCCceeeecCccccCCCCceeCCCccccc
Q 043865 44 RSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWF 79 (203)
Q Consensus 44 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~ 79 (203)
.+-|| |+.+.+.++. ....+|| ||..+
T Consensus 4 vv~C~---C~~~~~~~~~-----~kT~~C~-CG~~~ 30 (71)
T 1gh9_A 4 IFRCD---CGRALYSREG-----AKTRKCV-CGRTV 30 (71)
T ss_dssp EEEET---TSCCEEEETT-----CSEEEET-TTEEE
T ss_pred EEECC---CCCEEEEcCC-----CcEEECC-CCCee
Confidence 35676 9998887776 7788998 98863
No 78
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=59.19 E-value=5 Score=26.50 Aligned_cols=29 Identities=24% Similarity=0.528 Sum_probs=21.7
Q ss_pred cCCCCCCCCce------eEecCCcceeEe-cccccc
Q 043865 115 HGARRPACGSC------VERKEGCRVMYC-RCKTSF 143 (203)
Q Consensus 115 ~~k~CP~C~~~------iek~~GCnhm~C-~C~~~F 143 (203)
..-.||.|++. +.|..|=-+++| .|+..|
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 34579999875 445677888999 698777
No 79
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=58.24 E-value=1.6 Score=28.80 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=25.5
Q ss_pred CCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
..||-|...++..+ ..++-.|++.||+.|...|..
T Consensus 41 ~~C~IC~~~~~~~~--~~~~l~C~H~Fh~~Ci~~wl~ 75 (91)
T 2l0b_A 41 MCCPICCSEYVKGD--VATELPCHHYFHKPCVSIWLQ 75 (91)
T ss_dssp SEETTTTEECCTTC--EEEEETTTEEEEHHHHHHHHT
T ss_pred CCCcccChhhcCCC--cEEecCCCChHHHHHHHHHHH
Confidence 56999987765433 223337999999999998865
No 80
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=57.78 E-value=2 Score=29.48 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=24.4
Q ss_pred CCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
-.||-|...+. +-++-.||+.||+.|...|..
T Consensus 24 ~~C~IC~~~~~-----~p~~~~CgH~fC~~Ci~~~~~ 55 (116)
T 1rmd_A 24 ISCQICEHILA-----DPVETSCKHLFCRICILRCLK 55 (116)
T ss_dssp TBCTTTCSBCS-----SEEECTTSCEEEHHHHHHHHH
T ss_pred CCCCCCCcHhc-----CcEEcCCCCcccHHHHHHHHh
Confidence 47999988774 235557999999999887754
No 81
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=56.92 E-value=1.6 Score=26.58 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=20.6
Q ss_pred CCCCCCCc-eeEecCCcceeEecccccccccccccC
Q 043865 117 ARRPACGS-CVERKEGCRVMYCRCKTSFCYECGGNL 151 (203)
Q Consensus 117 k~CP~C~~-~iek~~GCnhm~C~C~~~FC~~C~~~~ 151 (203)
..||-|.. ...... =..+.=.||+.||+.|...|
T Consensus 4 ~~C~IC~~~~~~~~~-~~~~~~~CgH~fC~~Ci~~~ 38 (65)
T 1g25_A 4 QGCPRCKTTKYRNPS-LKLMVNVCGHTLCESCVDLL 38 (65)
T ss_dssp TCCSTTTTHHHHCSS-CCEEECTTCCCEEHHHHHHH
T ss_pred CcCCcCCCCccCCCc-cCeecCCCCCHhHHHHHHHH
Confidence 35888877 333221 01123368888888888887
No 82
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=55.88 E-value=3.6 Score=26.14 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=15.4
Q ss_pred CCCCCCCceeEecCCcceeEe-cccc
Q 043865 117 ARRPACGSCVERKEGCRVMYC-RCKT 141 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C-~C~~ 141 (203)
-.|+.|+..++..++ +-+.| .||+
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EECCCCCCcceeCCC-CCccCCCCCc
Confidence 468888888777644 44556 4654
No 83
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=55.46 E-value=2 Score=31.68 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=25.4
Q ss_pred CCCCCCCceeEecCCcceeEecccccccccccccCc
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLK 152 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~ 152 (203)
-.||-|...+.. -+++.||+.||..|...|.
T Consensus 19 ~~C~IC~~~~~~-----pv~~~CgH~fC~~Ci~~~~ 49 (170)
T 3hcs_A 19 YECPICLMALRE-----AVQTPCGHRFCKACIIKSI 49 (170)
T ss_dssp GBCTTTCSBCSS-----EEECTTSCEEEHHHHHHHH
T ss_pred CCCCCCChhhcC-----cEECCCCCHHHHHHHHHHH
Confidence 579999988753 3677899999999988875
No 84
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=53.17 E-value=20 Score=18.94 Aligned_cols=17 Identities=12% Similarity=0.475 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043865 179 LIFTVLGVLGGVIYGIY 195 (203)
Q Consensus 179 ~~f~~l~~~~~~~~~~~ 195 (203)
..|++.+.||.+.|.|+
T Consensus 6 Yt~ll~~tlgiiFFAI~ 22 (32)
T 3arc_T 6 YVFIFACIIALFFFAIF 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34555666666666654
No 85
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=52.99 E-value=2.1 Score=29.19 Aligned_cols=40 Identities=20% Similarity=0.391 Sum_probs=25.8
Q ss_pred CCCccccccccCCcCCCCCCccccccccccchhHHHHHHHHhccCCCCCCCCceeEecCC
Q 043865 72 CPNCKQWFCFQCKVAWHAGYRCEESGNLRDWNDIAFGKLVERMHGARRPACGSCVERKEG 131 (203)
Q Consensus 72 C~~C~~~~C~~C~~~~H~~~~C~~~~~~~~~~d~~~~~~~~~~~~k~CP~C~~~iek~~G 131 (203)
-..|++.||..|...|-.... ......||.|+..+....|
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~--------------------~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGN--------------------KDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTC--------------------CSSCCBCTTTCCBSSSCSS
T ss_pred cCCCCCcccHHHHHHHHHccc--------------------CCCCCcCCCCCCccCCCCC
Confidence 456899999998877641100 0223579999988765543
No 86
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=52.51 E-value=8.8 Score=24.06 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=21.0
Q ss_pred cCCCCCCCCceeEecCCcceeEe-cccccc
Q 043865 115 HGARRPACGSCVERKEGCRVMYC-RCKTSF 143 (203)
Q Consensus 115 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~F 143 (203)
.+-.||.|+...+-...=+.+.| .|+..|
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 34679999998887766567778 576544
No 87
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=51.61 E-value=14 Score=24.31 Aligned_cols=32 Identities=19% Similarity=0.583 Sum_probs=23.7
Q ss_pred eeCCCCCCCceeeecCccccCCCCceeCCCcccccccc
Q 043865 45 SYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCFQ 82 (203)
Q Consensus 45 ~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~ 82 (203)
+.|| +|.+.-..=.. ....+.|..|+...|.-
T Consensus 37 VkCp--~C~~~~~VFSh----A~t~V~C~~CgtvL~~P 68 (86)
T 3iz6_X 37 VKCQ--GCFNITTVFSH----SQTVVVCPGCQTVLCQP 68 (86)
T ss_dssp EECT--TTCCEEEEETT----CSSCCCCSSSCCCCSCC
T ss_pred EECC--CCCCeeEEEec----CCcEEEccCCCCEeecC
Confidence 8898 79986654333 36789999999988853
No 88
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex, structural genomics, NPPSFA; HET: ATP; 2.00A {Methanocaldococcus jannaschii}
Probab=51.35 E-value=7.2 Score=28.50 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=19.9
Q ss_pred CceeCCCCCC-C------ceeeecCccccCCCCceeCCCccccc
Q 043865 43 ERSYCPNRNC-M------ALVVNEGEINYGTLKKARCPNCKQWF 79 (203)
Q Consensus 43 ~~~~Cp~~~C-~------~~~~~~~~~~~~~~~~~~C~~C~~~~ 79 (203)
+.+.||||+| . ..+...+ ......+|..|.+.+
T Consensus 104 gvl~C~Np~CITn~E~v~s~F~v~~----~~~~~lrC~YCe~~~ 143 (149)
T 2yww_A 104 GTLKCTNPNCITNKEKVRGKFKIES----KNPLKIRCYYCEKFL 143 (149)
T ss_dssp SSSCCSCTTSGGGTSCCCCEEEEEE----ETTEEEEETTTCCBC
T ss_pred CeEEcCCCCCCcCCcccccEEEEEe----CCCCEEEeeCCCcCh
Confidence 4588999999 3 1122211 113458998888764
No 89
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=51.18 E-value=7.2 Score=29.20 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=20.1
Q ss_pred CCCCCCCceeEecCCcceeEe-cccc
Q 043865 117 ARRPACGSCVERKEGCRVMYC-RCKT 141 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C-~C~~ 141 (203)
-.|+.|+....+.+ ++|.| .|+.
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~ 164 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGR 164 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCC
T ss_pred ecccccCCceEECC--CEEECCCCCC
Confidence 47999999998876 99999 7985
No 90
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=49.68 E-value=6.7 Score=29.85 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=19.9
Q ss_pred CCCCCCCCceeEe-cCCcceeEe-cccccccc
Q 043865 116 GARRPACGSCVER-KEGCRVMYC-RCKTSFCY 145 (203)
Q Consensus 116 ~k~CP~C~~~iek-~~GCnhm~C-~C~~~FC~ 145 (203)
.+.||+|+.-+.- ...+ ..+| +|++-|.+
T Consensus 113 ~~~Cp~Cg~g~fma~h~d-R~~CGkC~~t~~~ 143 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYD-RHYCGKCHLTLKI 143 (189)
T ss_dssp SEECSTTCSSCEEEECSS-CEEETTTCCCBCC
T ss_pred cccCCccCCCccccCccC-CCccCCceeEEEe
Confidence 4789999965433 3444 4499 89988754
No 91
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=48.00 E-value=10 Score=24.65 Aligned_cols=31 Identities=16% Similarity=0.481 Sum_probs=22.9
Q ss_pred eeCCCCCCCceeeecCccccCCCCceeCCCccccccc
Q 043865 45 SYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCF 81 (203)
Q Consensus 45 ~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 81 (203)
+.|| +|.+.-..=.. ....+.|..|+...|.
T Consensus 33 VkCp--~C~n~q~VFSh----A~t~V~C~~Cg~~L~~ 63 (81)
T 2xzm_6 33 VKCA--QCQNIQMIFSN----AQSTIICEKCSAILCK 63 (81)
T ss_dssp EECS--SSCCEEEEETT----CSSCEECSSSCCEEEE
T ss_pred eECC--CCCCeeEEEec----CccEEEccCCCCEEee
Confidence 6788 79886654333 3678999999998774
No 92
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=47.31 E-value=30 Score=23.77 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHhh-cc---------CCCceeCCCCCCCceeeecCccccCCCCce-eCCCcccc
Q 043865 22 IPSNLFSKWCDVLCEDY-VL---------GFERSYCPNRNCMALVVNEGEINYGTLKKA-RCPNCKQW 78 (203)
Q Consensus 22 l~~e~~~~y~~~~~~~~-i~---------~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~-~C~~C~~~ 78 (203)
+.++.++..-+.+.+.. +. .+-..+|. +|++.+..+.. .. .||.|+..
T Consensus 41 v~~e~l~f~f~~~~~gt~~~e~a~L~i~~~p~~~~C~--~CG~~~e~~~~-------~~~~CP~Cgs~ 99 (119)
T 2kdx_A 41 MDKSLFVSAFETFREESLVCKDAILDIVDEKVELECK--DCSHVFKPNAL-------DYGVCEKCHSK 99 (119)
T ss_dssp CCHHHHHHHHHHHGGGCTTTSSCCEEEEEECCEEECS--SSSCEECSCCS-------TTCCCSSSSSC
T ss_pred ccHHHHHHHHHHHHhCChhhcCcEEEEEeccceEEcC--CCCCEEeCCCC-------CCCcCccccCC
Confidence 45666666555555555 32 24567887 68887765332 35 78877654
No 93
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=46.88 E-value=3.9 Score=29.71 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=23.6
Q ss_pred CCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
..||-|...+. +-++-.||+.||..|...|-.
T Consensus 79 ~~C~IC~~~~~-----~pv~~~CgH~fC~~Ci~~~~~ 110 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVTTECFHNVCKDCLQRSFK 110 (150)
T ss_dssp TBCTTTSSBCS-----SEEECTTSCEEEHHHHHHHHH
T ss_pred CEeecCChhhc-----CCEEcCCCCchhHHHHHHHHH
Confidence 57999988764 344457888888888877754
No 94
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=46.66 E-value=9.4 Score=20.15 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=10.1
Q ss_pred CccCCcccCCCcC
Q 043865 1 KIECPGVHCDQFL 13 (203)
Q Consensus 1 ~I~CP~~~C~~~l 13 (203)
.++||.++|+..-
T Consensus 1 ~~~CPtpGC~g~G 13 (31)
T 2jx1_A 1 DLKCPTPGCDGSG 13 (31)
T ss_dssp CCSCSCTTCCSSC
T ss_pred CCcCCCCCccccc
Confidence 4789999998643
No 95
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.49 E-value=3.9 Score=26.24 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=16.5
Q ss_pred cceeEecccccccccccccCcC
Q 043865 132 CRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 132 Cnhm~C~C~~~FC~~C~~~~~~ 153 (203)
+..+.-.|++.|+..|..+|-.
T Consensus 41 ~~~~~~~C~H~FH~~Ci~~Wl~ 62 (81)
T 2ecl_A 41 CVVVWGECNHSFHNCCMSLWVK 62 (81)
T ss_dssp CCEEEETTSCEEEHHHHHHHTT
T ss_pred eEEEeCCCCCccChHHHHHHHH
Confidence 3344447999999999998865
No 96
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=45.57 E-value=14 Score=22.26 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=15.5
Q ss_pred CCCCCCCCc-eeEecCCcceeEe-cccc
Q 043865 116 GARRPACGS-CVERKEGCRVMYC-RCKT 141 (203)
Q Consensus 116 ~k~CP~C~~-~iek~~GCnhm~C-~C~~ 141 (203)
...||.|+. .+.....=..+.| .||.
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 457999976 4444443445666 5653
No 97
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=45.30 E-value=12 Score=23.26 Aligned_cols=38 Identities=13% Similarity=0.370 Sum_probs=26.2
Q ss_pred CCCCCCCceeEecCCcceeEeccccc-ccccccccCcCCCCCCC
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTS-FCYECGGNLKSASGCLC 159 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~-FC~~C~~~~~~~~~C~~ 159 (203)
..||-|..... +-++=.|||. ||+.|...|....-|+.
T Consensus 25 ~~C~iC~~~~~-----~~~~~pCgH~~~C~~C~~~~~~CP~Cr~ 63 (74)
T 4ic3_A 25 KLCKICMDRNI-----AIVFVPCGHLVTCKQCAEAVDKCPMCYT 63 (74)
T ss_dssp TBCTTTSSSBC-----CEEEETTCCBCCCHHHHTTCSBCTTTCC
T ss_pred CCCCCCCCCCC-----CEEEcCCCChhHHHHhhhcCccCCCcCc
Confidence 57999986543 2233389999 99999999965444443
No 98
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=45.13 E-value=10 Score=24.73 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=15.2
Q ss_pred cCCcccCCCcCCHHHH-hhcCCHH
Q 043865 3 ECPGVHCDQFLDLFTC-KLMIPSN 25 (203)
Q Consensus 3 ~CP~~~C~~~l~~~~i-~~~l~~e 25 (203)
+||- |++.|+-+++ +..|+-+
T Consensus 10 ~~Pl--CG~~L~W~eLIeQML~~e 31 (95)
T 2k5c_A 10 KCPI--CGSPLKWEELIEEMLIIE 31 (95)
T ss_dssp ECSS--SCCEECHHHHHHHSTTCS
T ss_pred cCCc--CCCccCHHHHHHHHHhhc
Confidence 6885 9999998766 5566533
No 99
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=44.98 E-value=45 Score=25.10 Aligned_cols=38 Identities=26% Similarity=0.496 Sum_probs=21.6
Q ss_pred CCCceeCCCCCCCc-eeeecCc--cccCCCCceeCCCcccc
Q 043865 41 GFERSYCPNRNCMA-LVVNEGE--INYGTLKKARCPNCKQW 78 (203)
Q Consensus 41 ~~~~~~Cp~~~C~~-~~~~~~~--~~~~~~~~~~C~~C~~~ 78 (203)
..++-.||+-.|++ .+.+-+. +......++.||.|+-.
T Consensus 103 ~g~FG~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~Dv 143 (182)
T 1qf8_A 103 QGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDV 143 (182)
T ss_dssp TTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCE
T ss_pred cCcCCCCCccccCCCcccCCccCCCCCCCceEEECCCccce
Confidence 46788999999965 3333222 22334556666655443
No 100
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=42.28 E-value=18 Score=21.63 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=18.4
Q ss_pred cCCCCCCCCceeEecCCcceeEec---cccc
Q 043865 115 HGARRPACGSCVERKEGCRVMYCR---CKTS 142 (203)
Q Consensus 115 ~~k~CP~C~~~iek~~GCnhm~C~---C~~~ 142 (203)
.+-.||.|+...+..+ +.+.|. |+..
T Consensus 9 ~iL~CP~c~~~L~~~~--~~L~C~~~~c~~~ 37 (56)
T 2kpi_A 9 EILACPACHAPLEERD--AELICTGQDCGLA 37 (56)
T ss_dssp TSCCCSSSCSCEEEET--TEEEECSSSCCCE
T ss_pred hheeCCCCCCcceecC--CEEEcCCcCCCcE
Confidence 3458999999888777 566664 5543
No 101
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=41.75 E-value=20 Score=28.06 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=22.0
Q ss_pred ccccccCCcCCCCCCccccccccccchhHHHHHHHHhccCCCCCCCCcee
Q 043865 77 QWFCFQCKVAWHAGYRCEESGNLRDWNDIAFGKLVERMHGARRPACGSCV 126 (203)
Q Consensus 77 ~~~C~~C~~~~H~~~~C~~~~~~~~~~d~~~~~~~~~~~~k~CP~C~~~i 126 (203)
...|..|+.....|..|..-.. .-...=+.++.+......||.|+...
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~--~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGI--RMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCC--EECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhCCcccCccCh--HHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 3445555555555555543100 00112233344334446788877653
No 102
>1pg5_B Aspartate carbamoyltransferase regulatory chain; 2.60A {Sulfolobus acidocaldarius} SCOP: d.58.2.1 g.41.7.1 PDB: 2be9_B*
Probab=41.60 E-value=14 Score=27.47 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=19.1
Q ss_pred CceeCCCCCC-Cce----eeecCccccCCCCceeCCCcccc
Q 043865 43 ERSYCPNRNC-MAL----VVNEGEINYGTLKKARCPNCKQW 78 (203)
Q Consensus 43 ~~~~Cp~~~C-~~~----~~~~~~~~~~~~~~~~C~~C~~~ 78 (203)
+.+.||||+| .+. + ..-.+.+......+|..|.+.
T Consensus 113 gvl~C~Np~CITn~~~Epv-s~F~v~~~~~~~lrC~YCe~~ 152 (168)
T 1pg5_B 113 GILKCPNPYCITSNDVEAI-PTFKTLTEKPLKMRCEYCETI 152 (168)
T ss_dssp SSSCCSCTTBGGGTCTTSC-CEEEEEETTTTEEEETTTCCE
T ss_pred CeEEcCCCCcccCCCCccc-cEEEEEcCCCCEEEeeCCCCE
Confidence 4688999999 321 1 110110112445788877765
No 103
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=41.44 E-value=30 Score=21.55 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=22.6
Q ss_pred ceeCCCCCCCceeeecCccccCCCCceeCCCccccccc
Q 043865 44 RSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCF 81 (203)
Q Consensus 44 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 81 (203)
.+.|| +|.+.-..=.. ....+.|..|+...|.
T Consensus 7 ~VKCp--~C~niq~VFSh----A~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 7 KVKCP--DCEHEQVIFDH----PSTIVKCIICGRTVAE 38 (66)
T ss_dssp EEECT--TTCCEEEEESS----CSSCEECSSSCCEEEE
T ss_pred EEECC--CCCCceEEEec----CceEEEcccCCCEEee
Confidence 36788 79876544332 3678999999998774
No 104
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=41.20 E-value=30 Score=22.66 Aligned_cols=44 Identities=20% Similarity=0.562 Sum_probs=30.9
Q ss_pred CCceeCCCCCCCceeeecCccccCCCCceeCCCccccccccCCcCCCCCCcccccc
Q 043865 42 FERSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCFQCKVAWHAGYRCEESG 97 (203)
Q Consensus 42 ~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~ 97 (203)
.....|..++|+.... ..+.|+.|+..||..-+.+- ...|...+
T Consensus 23 ~~~~~C~~~~Ck~~~~----------l~f~C~~C~~~FC~~HR~~e--~H~C~~~~ 66 (86)
T 1wfe_A 23 HKSYSCSFKGCTDVEL----------VAVICPYCEKNFCLRHRHQS--DHDCEKLE 66 (86)
T ss_dssp SCCEECCSTTCCCEES----------SCEECTTTCCEECGGGCSTG--GGTCSSSS
T ss_pred CCCCCCCCcCCCCCCc----------cceECCCCCcccccccCCcc--CCCCCCCc
Confidence 3456799999997732 34799999999999877542 23576543
No 105
>4fyy_B Aspartate carbamoyltransferase regulatory chain; pyrimidine nucleotide biosynthesis, feedback inhibition, all transferase; HET: UTP CTP; 1.94A {Escherichia coli} PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G* 1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B* 1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B 1tug_B* 1xjw_B* ...
Probab=41.04 E-value=15 Score=27.00 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=21.1
Q ss_pred CceeCCCCCCCceeeecCc----cccCCCCceeCCCccccc
Q 043865 43 ERSYCPNRNCMALVVNEGE----INYGTLKKARCPNCKQWF 79 (203)
Q Consensus 43 ~~~~Cp~~~C~~~~~~~~~----~~~~~~~~~~C~~C~~~~ 79 (203)
+.+.||||+|-.-..+... .........+|..|.+.+
T Consensus 105 gvi~C~Np~CIT~~E~v~~~f~v~~~~~~~~~rC~YCe~~~ 145 (153)
T 4fyy_B 105 NVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEF 145 (153)
T ss_dssp SSCCCSCTTBTTTTSSCCCEEEEEECSSSEEEEETTTCCEE
T ss_pred CeEECCCCCcccCCCCCCCEEEEEEcCCCCEEEeeCCCCEe
Confidence 5689999999643211110 001124468898887654
No 106
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=40.95 E-value=5.7 Score=27.75 Aligned_cols=24 Identities=25% Similarity=0.642 Sum_probs=0.0
Q ss_pred CCcceeEecccccccccccccCcC
Q 043865 130 EGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 130 ~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
+.|.-+.-.|++.|+..|..+|-.
T Consensus 75 ~~~~v~~~~C~H~FH~~CI~~Wl~ 98 (117)
T 4a0k_B 75 EECTVAWGVCNHAFHFHCISRWLK 98 (117)
T ss_dssp ------------------------
T ss_pred cccccccCCcCceEcHHHHHHHHH
Confidence 446666668999999999999875
No 107
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.11 E-value=16 Score=22.61 Aligned_cols=41 Identities=20% Similarity=0.549 Sum_probs=28.7
Q ss_pred ceeCCCCCCCceeeecCccccCCCCceeCCCccccccccCCcCCCCCCccccc
Q 043865 44 RSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCFQCKVAWHAGYRCEES 96 (203)
Q Consensus 44 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~ 96 (203)
...|..++|.... ...+.|..|+..||.+-+.+ +...|...
T Consensus 12 ~~~Cs~~~Ck~~~----------ll~f~C~~C~~~FC~~HR~~--e~H~C~~~ 52 (63)
T 1x4v_A 12 TNKCERAGCRQRE----------MMKLTCERCSRNFCIKHRHP--LDHDCSGE 52 (63)
T ss_dssp CCCCCSTTCCCCC----------SSCCBCSSSCCBCCHHHHST--TSSCCCST
T ss_pred CCCCCccCCCCCC----------ccceECCCCCcccCcccCCc--cCCcCCCC
Confidence 4578888888651 23479999999999987754 22356643
No 108
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=39.91 E-value=19 Score=23.13 Aligned_cols=39 Identities=26% Similarity=0.568 Sum_probs=28.1
Q ss_pred ccCCCceeCCCCCCCceeeecCccccCCCCceeCCCccccccccCCcC
Q 043865 39 VLGFERSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCFQCKVA 86 (203)
Q Consensus 39 i~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 86 (203)
+++.+...|. .|+..+.. ...+..|..||..||..|-..
T Consensus 14 ~~d~~~~~C~--~C~~~Fs~-------~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 14 LKDDEATHCR--QCEKEFSI-------SRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp -CCCCCCBCT--TTCCBCBT-------TBCCEECTTTCCEECSGGGCE
T ss_pred ccCccCCccc--CcCCcccC-------ccccccCCCCCCEEChHHhCC
Confidence 4466677787 58776542 245789999999999999753
No 109
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=39.90 E-value=27 Score=24.43 Aligned_cols=37 Identities=24% Similarity=0.591 Sum_probs=26.1
Q ss_pred CCCceeCCCCCCCceeeecCccccCCCCceeCCCccccccccCCcC
Q 043865 41 GFERSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCFQCKVA 86 (203)
Q Consensus 41 ~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 86 (203)
+.+...|+ .|+..+.. ...+..|..||..||..|-..
T Consensus 66 d~~~~~C~--~C~~~Fs~-------~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 66 DNEVQNCM--ACGKGFSV-------TVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GGGCCBCT--TTCCBCCS-------SSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCCCc--CcCCcccc-------ccccccCCCCCeEEChHHhCC
Confidence 34456777 57765532 145789999999999999753
No 110
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=39.90 E-value=11 Score=24.82 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=26.9
Q ss_pred ccCCCCCCCCceeEecCCcceeEe-cccccccccccccCcC
Q 043865 114 MHGARRPACGSCVERKEGCRVMYC-RCKTSFCYECGGNLKS 153 (203)
Q Consensus 114 ~~~k~CP~C~~~iek~~GCnhm~C-~C~~~FC~~C~~~~~~ 153 (203)
.....|..|+...... =-.-.| .||.-||..|......
T Consensus 18 ~~~~~C~~C~~~F~~~--~RrhhCr~CG~v~C~~Cs~~~~~ 56 (90)
T 3t7l_A 18 SEAPNCMNCQVKFTFT--KRRHHCRACGKVFCGVCCNRKCK 56 (90)
T ss_dssp GGCCBCTTTCCBCCSS--SCCEECTTTCCEECGGGSCEEEE
T ss_pred ccCCcCcCCCCcccch--hhCccccCCCCEECCcccCCeee
Confidence 3456799998866422 224679 6999999999776543
No 111
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=38.72 E-value=47 Score=21.30 Aligned_cols=29 Identities=10% Similarity=0.269 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 043865 170 YCAIISGLILIFTVLGVLGGVIYGIYCVI 198 (203)
Q Consensus 170 ~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 198 (203)
..+++.+.+...+++++++++++=++..+
T Consensus 10 ~~~Iv~gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555455555555555444444
No 112
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.73 E-value=22 Score=22.96 Aligned_cols=37 Identities=27% Similarity=0.545 Sum_probs=26.0
Q ss_pred cCCCceeCCCCCCCceeeecCccccCCCCceeCCCccccccccCCc
Q 043865 40 LGFERSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCFQCKV 85 (203)
Q Consensus 40 ~~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 85 (203)
++.+...|. .|+..+.. ...+..|..||..||..|-.
T Consensus 10 pd~~~~~C~--~C~~~F~~-------~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 10 PTNNFGNCT--GCSATFSV-------LKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SCCCCSSCS--SSCCCCCS-------SSCCEECSSSCCEECTTTSC
T ss_pred cCCCCCcCc--CcCCcccc-------chhhhhhcCCCcEEChhhcC
Confidence 345556676 47765522 14578999999999999964
No 113
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=37.59 E-value=62 Score=24.99 Aligned_cols=38 Identities=26% Similarity=0.503 Sum_probs=21.3
Q ss_pred CCCceeCCCCCCCce-eeecCc--cccCCCCceeCCCcccc
Q 043865 41 GFERSYCPNRNCMAL-VVNEGE--INYGTLKKARCPNCKQW 78 (203)
Q Consensus 41 ~~~~~~Cp~~~C~~~-~~~~~~--~~~~~~~~~~C~~C~~~ 78 (203)
..++-.||+-.|++. +.+-+. .......++.||.|+-.
T Consensus 103 ~g~FG~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~Dv 143 (215)
T 4dgl_A 103 QGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDV 143 (215)
T ss_dssp TTTTCBCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCCE
T ss_pred cCCCCcCCccccCCCceeccccCCCCCccceeEeCCCcccc
Confidence 467889999999863 332222 12233445566654443
No 114
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.72 E-value=39 Score=20.82 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=22.3
Q ss_pred eeCCCCCCCceeeecCccccCCCCceeCCCccccccc
Q 043865 45 SYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCF 81 (203)
Q Consensus 45 ~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 81 (203)
+.|| +|.+.-..=.. ....+.|..|+...|.
T Consensus 16 VkCp--~C~~~q~VFSh----a~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCI--DCGNEQIVFSH----PATKVRCLICGATLVE 46 (63)
T ss_dssp EECS--SSCCEEEEESS----CSSCEECSSSCCEEEE
T ss_pred EECC--CCCCeeEEEec----CCeEEEccCcCCEEec
Confidence 7788 79876544332 3678999999988774
No 115
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=36.35 E-value=24 Score=22.77 Aligned_cols=37 Identities=22% Similarity=0.599 Sum_probs=25.6
Q ss_pred CCCceeCCCCCCCceeeecCccccCCCCceeCCCccccccccCCcC
Q 043865 41 GFERSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCFQCKVA 86 (203)
Q Consensus 41 ~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~ 86 (203)
+.+...|. .|+..+.. ...+..|..||..||..|-..
T Consensus 18 d~~~~~C~--~C~~~Fs~-------~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 18 DEDAPACN--GCGCVFTT-------TVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTTCCBCT--TTCCBCCT-------TSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCCc--CcCCcccc-------chhcccccCCCcEEChHHhCC
Confidence 44556676 47765432 145789999999999998643
No 116
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=36.14 E-value=53 Score=23.32 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHhhcc-C--------CCceeCCCCCCCceeeecC
Q 043865 22 IPSNLFSKWCDVLCEDYVL-G--------FERSYCPNRNCMALVVNEG 60 (203)
Q Consensus 22 l~~e~~~~y~~~~~~~~i~-~--------~~~~~Cp~~~C~~~~~~~~ 60 (203)
+.++.++..-+.+.+..+. . +-..+|+ +|++.+..+.
T Consensus 39 v~~e~l~faf~~~~~gt~~e~A~L~i~~~p~~~~C~--~CG~~~~~~~ 84 (139)
T 3a43_A 39 VAEDIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCR--NCNYEWKLKE 84 (139)
T ss_dssp CCHHHHHHHHHHHHTTSTTTTCEEEEEEECCEEEET--TTCCEEEGGG
T ss_pred hhHHHHHHHHHHHHcCCcccCCEEEEEecCCcEECC--CCCCEEeccc
Confidence 4566666655555555442 3 5578998 6998876544
No 117
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=35.42 E-value=21 Score=27.84 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=16.0
Q ss_pred CCCCCCCc----eeEecCCcceeEe-ccccc
Q 043865 117 ARRPACGS----CVERKEGCRVMYC-RCKTS 142 (203)
Q Consensus 117 k~CP~C~~----~iek~~GCnhm~C-~C~~~ 142 (203)
.+||.|+- .+- .+| ++.| +||+.
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg--~~~C~~Cg~~ 42 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDG--HTFCYVCEKW 42 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTS--CEEETTTCCE
T ss_pred CcCCCCCCCCCceEe-CCC--CeecccCCCc
Confidence 58999987 444 455 5788 67764
No 118
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=35.24 E-value=17 Score=29.08 Aligned_cols=24 Identities=21% Similarity=0.717 Sum_probs=16.4
Q ss_pred CCCCCCCceeEec--CCcceeEe-ccc
Q 043865 117 ARRPACGSCVERK--EGCRVMYC-RCK 140 (203)
Q Consensus 117 k~CP~C~~~iek~--~GCnhm~C-~C~ 140 (203)
++||.|+..|++. +|=.-..| +|+
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 7899999999987 44333344 343
No 119
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=34.64 E-value=43 Score=21.36 Aligned_cols=43 Identities=19% Similarity=0.510 Sum_probs=30.3
Q ss_pred eeCCCCCCCceeeecCccccCCCCceeCCCccccccccCCcCCCCCCcccccccc
Q 043865 45 SYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCFQCKVAWHAGYRCEESGNL 99 (203)
Q Consensus 45 ~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~H~~~~C~~~~~~ 99 (203)
..|..++|+.. + ..-+.|..|+..||..-+.+ +...|.....+
T Consensus 15 ~~Cs~~~C~~~----d------flpf~C~~C~~~FC~~HR~~--e~H~C~~~~~~ 57 (75)
T 1wys_A 15 QHCQVQHCRQR----D------FLPFVCDGCSGIFCLEHRSK--DSHGCSEVNVV 57 (75)
T ss_dssp CCCSCTTTCCC----S------CCCEECTTTCCEECSTTCSS--GGGTCCCCSSC
T ss_pred CCcCcccCCCc----c------ceeeECcccCcCcCcccCCc--cccCCCCCccc
Confidence 57887888865 1 23589999999999987754 23367765544
No 120
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase, psychrophilic, cold adaptation, alloste holoenzyme; 2.85A {Moritella profunda}
Probab=33.85 E-value=17 Score=26.69 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=19.8
Q ss_pred CCceeCCCCCC-Cce------eeecCccccCCCCceeCCCccccc
Q 043865 42 FERSYCPNRNC-MAL------VVNEGEINYGTLKKARCPNCKQWF 79 (203)
Q Consensus 42 ~~~~~Cp~~~C-~~~------~~~~~~~~~~~~~~~~C~~C~~~~ 79 (203)
.+.+.||||+| .+. +...+. .+....+|..|.+.+
T Consensus 103 ~gv~~C~Np~CITn~E~v~s~F~v~~~---~~~~~lrC~YCe~~~ 144 (153)
T 2be7_D 103 ENVFPCPNSNCITHGEPVTSSFSIKKT---KGNIGLKCKYCEKTF 144 (153)
T ss_dssp CSSSCCSCTTCTTSSSSCCCCEEEEEE---TTEEEEEETTTCCEE
T ss_pred CCeEEcCCCCCCcCCcccccEEEEeec---CCCCEEEeeCCCCEe
Confidence 35688999999 421 111110 013457888887653
No 121
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=33.66 E-value=20 Score=28.57 Aligned_cols=13 Identities=54% Similarity=0.894 Sum_probs=12.0
Q ss_pred CCCCCCCceeEec
Q 043865 117 ARRPACGSCVERK 129 (203)
Q Consensus 117 k~CP~C~~~iek~ 129 (203)
++||.|+..|++.
T Consensus 236 ~pC~~CG~~I~~~ 248 (266)
T 1ee8_A 236 LPCPACGRPVERR 248 (266)
T ss_dssp SBCTTTCCBCEEE
T ss_pred CCCCCCCCEeeEE
Confidence 7899999999987
No 122
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=33.27 E-value=19 Score=28.73 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=11.9
Q ss_pred CCCCCCCceeEec
Q 043865 117 ARRPACGSCVERK 129 (203)
Q Consensus 117 k~CP~C~~~iek~ 129 (203)
++||.|+..|++.
T Consensus 241 ~pC~~CG~~I~~~ 253 (268)
T 1k82_A 241 EPCRVCGTPIVAT 253 (268)
T ss_dssp SBCTTTCCBCEEE
T ss_pred CCCCCCCCEeeEE
Confidence 6899999999986
No 123
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=33.21 E-value=33 Score=18.48 Aligned_cols=25 Identities=16% Similarity=0.472 Sum_probs=16.9
Q ss_pred CCCCCCce---eEecCCcceeEe-ccccc
Q 043865 118 RRPACGSC---VERKEGCRVMYC-RCKTS 142 (203)
Q Consensus 118 ~CP~C~~~---iek~~GCnhm~C-~C~~~ 142 (203)
.||.|+.+ +.+..+=-.+.| .||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 47777763 455567777888 68864
No 124
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=32.90 E-value=19 Score=28.86 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=11.9
Q ss_pred CCCCCCCceeEec
Q 043865 117 ARRPACGSCVERK 129 (203)
Q Consensus 117 k~CP~C~~~iek~ 129 (203)
++||.|+..|++.
T Consensus 246 ~pC~~CG~~I~~~ 258 (273)
T 3u6p_A 246 NPCKRCGTPIEKT 258 (273)
T ss_dssp SBCTTTCCBCEEE
T ss_pred CCCCCCCCeEEEE
Confidence 6999999999985
No 125
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=32.69 E-value=60 Score=20.60 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 043865 177 LILIFTVLGVLGGVIYGIYCVIK 199 (203)
Q Consensus 177 ~~~~f~~l~~~~~~~~~~~~~~~ 199 (203)
..+-|++++++|.+++-+...|.
T Consensus 41 ~~iG~~imG~IGfiIkli~ipIn 63 (74)
T 1rh5_B 41 TALGISLLGIIGYIIHVPATYIK 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34447777888887776665554
No 126
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=32.42 E-value=27 Score=22.10 Aligned_cols=38 Identities=21% Similarity=0.499 Sum_probs=24.7
Q ss_pred CCCCCCCceeEecCCcceeEeccccc-ccccccccCcCCCCCCC
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTS-FCYECGGNLKSASGCLC 159 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~-FC~~C~~~~~~~~~C~~ 159 (203)
..|+-|..... +.+.=.|||. ||+.|...+....-|+.
T Consensus 19 ~~C~IC~~~~~-----~~v~~pCgH~~~C~~C~~~~~~CP~Cr~ 57 (79)
T 2yho_A 19 MLCMVCCEEEI-----NSTFCPCGHTVCCESCAAQLQSCPVCRS 57 (79)
T ss_dssp TBCTTTSSSBC-----CEEEETTCBCCBCHHHHTTCSBCTTTCC
T ss_pred CEeEEeCcccC-----cEEEECCCCHHHHHHHHHhcCcCCCCCc
Confidence 57999976432 2222378888 88888888775444443
No 127
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=32.13 E-value=13 Score=27.54 Aligned_cols=21 Identities=14% Similarity=0.396 Sum_probs=16.5
Q ss_pred cCCCCCCCCceeEecCCcceeEe--cccc
Q 043865 115 HGARRPACGSCVERKEGCRVMYC--RCKT 141 (203)
Q Consensus 115 ~~k~CP~C~~~iek~~GCnhm~C--~C~~ 141 (203)
..|.||+|...++ ++.| .|||
T Consensus 109 q~k~CpnC~g~L~------~~~Crgh~Gy 131 (174)
T 1odh_A 109 QRKSCPNCNGPLK------LIPCRGHGGF 131 (174)
T ss_dssp HHSBCSSSCCBEE------EECCCTBTTB
T ss_pred hcCCCCCCCccee------eEeccCcCCC
Confidence 3489999998887 7888 4774
No 128
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=32.13 E-value=22 Score=20.57 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=19.2
Q ss_pred CCCceeeecCccccCCCCceeCCCcccccccc
Q 043865 51 NCMALVVNEGEINYGTLKKARCPNCKQWFCFQ 82 (203)
Q Consensus 51 ~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~ 82 (203)
.|+..+..++. +..+.+.||.||+..=.+
T Consensus 8 rCg~~fs~~el---~~lP~IrCpyCGyrii~K 36 (48)
T 4ayb_P 8 KCWKTFTDEQL---KVLPGVRCPYCGYKIIFM 36 (48)
T ss_dssp CTTTTCCCCCS---CCCSSSCCTTTCCSCEEC
T ss_pred ccCCCccHHHH---hhCCCcccCccCcEEEEE
Confidence 47666655443 346778999999875444
No 129
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=31.98 E-value=21 Score=28.40 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=11.7
Q ss_pred CCCCCCCceeEec
Q 043865 117 ARRPACGSCVERK 129 (203)
Q Consensus 117 k~CP~C~~~iek~ 129 (203)
++||.|+..|++.
T Consensus 235 ~pC~~CG~~I~~~ 247 (262)
T 1k3x_A 235 EPCERCGSIIEKT 247 (262)
T ss_dssp SBCTTTCCBCEEE
T ss_pred CCCCCCCCEeEEE
Confidence 5899999999986
No 130
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=31.96 E-value=16 Score=30.90 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=24.2
Q ss_pred CCCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 116 GARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 116 ~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
...||-|..... +-+.=.|||.||+.|...|..
T Consensus 332 ~~~C~ICle~~~-----~pv~lpCGH~FC~~Ci~~wl~ 364 (389)
T 2y1n_A 332 FQLCKICAENDK-----DVKIEPCGHLMCTSCLTSWQE 364 (389)
T ss_dssp SSBCTTTSSSBC-----CEEEETTCCEECHHHHHHHHH
T ss_pred CCCCCccCcCCC-----CeEEeCCCChhhHHHHHHHHh
Confidence 468999976652 233348999999999988853
No 131
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=31.19 E-value=16 Score=22.64 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=13.0
Q ss_pred CCCCCCCceeEecCCcceeEe-ccccc
Q 043865 117 ARRPACGSCVERKEGCRVMYC-RCKTS 142 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C-~C~~~ 142 (203)
-.|..|+..++...+ +-+.| .||+.
T Consensus 22 Y~C~~Cg~~~~l~~~-~~iRC~~CG~R 47 (63)
T 3h0g_L 22 YLCADCGARNTIQAK-EVIRCRECGHR 47 (63)
T ss_dssp CBCSSSCCBCCCCSS-SCCCCSSSCCC
T ss_pred EECCCCCCeeecCCC-CceECCCCCcE
Confidence 456666666555443 44555 35543
No 132
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=30.86 E-value=92 Score=18.90 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 043865 177 LILIFTVLGVLGGVIYGIYCV 197 (203)
Q Consensus 177 ~~~~f~~l~~~~~~~~~~~~~ 197 (203)
..+-|++++++|.+++-+..+
T Consensus 37 ~~iG~~i~G~iGf~Ikli~~~ 57 (61)
T 3mp7_B 37 TGLGIILIGLIGMLIRIVGIL 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344577778888777665543
No 133
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=30.00 E-value=20 Score=29.82 Aligned_cols=25 Identities=20% Similarity=0.682 Sum_probs=0.0
Q ss_pred cccc-ccccCCcCCCCCCccccccccccchhHHHHHHHHhccCCCCCCCCceeEe
Q 043865 75 CKQW-FCFQCKVAWHAGYRCEESGNLRDWNDIAFGKLVERMHGARRPACGSCVER 128 (203)
Q Consensus 75 C~~~-~C~~C~~~~H~~~~C~~~~~~~~~~d~~~~~~~~~~~~k~CP~C~~~iek 128 (203)
|++. ||..|...| +.||-|+..|++
T Consensus 313 CgH~~fC~~C~~~~-----------------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 313 CGHLVVCQECAPSL-----------------------------RKCPICRGIIKG 338 (345)
T ss_dssp TCCEEECTTTGGGC-----------------------------SBCTTTCCBCCE
T ss_pred CCChhHhHHHHhcC-----------------------------CcCCCCCCCccC
No 134
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.21 E-value=67 Score=23.65 Aligned_cols=23 Identities=35% Similarity=0.765 Sum_probs=15.6
Q ss_pred eeCCCCCCCceeeecCccccCCCCceeCCCccc
Q 043865 45 SYCPNRNCMALVVNEGEINYGTLKKARCPNCKQ 77 (203)
Q Consensus 45 ~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~ 77 (203)
-.|+ .|+++...+.+ -.||.|+.
T Consensus 139 ~~C~--~CG~i~~~~~p--------~~CP~Cg~ 161 (170)
T 3pwf_A 139 YICP--ICGYTAVDEAP--------EYCPVCGA 161 (170)
T ss_dssp EECT--TTCCEEESCCC--------SBCTTTCC
T ss_pred eEeC--CCCCeeCCCCC--------CCCCCCCC
Confidence 4488 59998873222 28999885
No 135
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=27.73 E-value=12 Score=25.44 Aligned_cols=24 Identities=25% Similarity=0.642 Sum_probs=17.4
Q ss_pred CCcceeEecccccccccccccCcC
Q 043865 130 EGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 130 ~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
++|.-+.=.|++.|+..|...|-.
T Consensus 64 ~~~~~~~~~C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 64 EECTVAWGVCNHAFHFHCISRWLK 87 (106)
T ss_dssp -CCCEEEETTSCEEEHHHHHHHHT
T ss_pred ccceEeecccCcEECHHHHHHHHH
Confidence 345555557899999999888864
No 136
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=27.43 E-value=30 Score=24.65 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=19.1
Q ss_pred CceeCCCCCCCceeeecCccccCCCCceeCCCccccc
Q 043865 43 ERSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWF 79 (203)
Q Consensus 43 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~ 79 (203)
+.-.|| .|+.-+..++. ....||.|+++|
T Consensus 26 ~lP~CP--~C~seytYeDg------~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCP--QCNSEYTYEDG------ALLVCPECAHEW 54 (138)
T ss_dssp CSCCCT--TTCCCCCEECS------SSEEETTTTEEE
T ss_pred cCCCCC--CCCCcceEecC------CeEECCcccccc
Confidence 345677 57766655554 468899888864
No 137
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=27.08 E-value=85 Score=17.32 Aligned_cols=16 Identities=31% Similarity=0.698 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhh
Q 043865 181 FTVLGVLGGVIYGIYC 196 (203)
Q Consensus 181 f~~l~~~~~~~~~~~~ 196 (203)
..++.++|+++|+-|.
T Consensus 19 ~~vi~~~giFfyGsYs 34 (40)
T 3arc_J 19 MGVIVIVGLFFYGAYA 34 (40)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred hhhhheeeEEEeeccc
Confidence 4567788888999885
No 138
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=26.82 E-value=54 Score=21.28 Aligned_cols=31 Identities=19% Similarity=0.640 Sum_probs=22.0
Q ss_pred eeCCCCCCCceeeecCccccCCCCceeCCCccccccc
Q 043865 45 SYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCF 81 (203)
Q Consensus 45 ~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~ 81 (203)
+.|| +|.+.-..=.. ....+.|..|+...|.
T Consensus 35 VkCp--~C~~~q~VFSh----a~t~V~C~~Cg~~L~~ 65 (82)
T 3u5c_b 35 VKCP--GCLNITTVFSH----AQTAVTCESCSTILCT 65 (82)
T ss_dssp EECT--TSCSCEEEESB----CSSCCCCSSSCCCCEE
T ss_pred EECC--CCCCeeEEEec----CCeEEEccccCCEEec
Confidence 7888 69876543333 2677899999988774
No 139
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=26.53 E-value=46 Score=21.90 Aligned_cols=42 Identities=17% Similarity=0.389 Sum_probs=24.0
Q ss_pred CCCceeCCCCCCCceeeecCccccCCCCceeCCCccccccccC
Q 043865 41 GFERSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCFQC 83 (203)
Q Consensus 41 ~~~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C 83 (203)
+...+.|+.++ ....-+.--++-+....+.||.|+..|=.+=
T Consensus 21 ~~~~v~CdG~~-~plgHPrVyL~i~~~g~~~CpYCg~~y~~~~ 62 (87)
T 2jz8_A 21 GVKEFMCVGAT-QPFDHPHIFIDMGSTDEKICPYCSTLYRYDP 62 (87)
T ss_dssp SCSEEECCCSS-CSSSSSSCEEECTTCCEECCTTTCCEEECCT
T ss_pred cCcEEEcCCCC-CCCCCCEEEEEcCCCCeEECCCCCCEeEcCC
Confidence 45668998864 1111111112223357799999999886543
No 140
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=26.08 E-value=69 Score=25.31 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=23.4
Q ss_pred cCCCCCCCCceeEecCCcceeEe-ccccc
Q 043865 115 HGARRPACGSCVERKEGCRVMYC-RCKTS 142 (203)
Q Consensus 115 ~~k~CP~C~~~iek~~GCnhm~C-~C~~~ 142 (203)
..+-||.|+...+..++=..+.| .|+..
T Consensus 106 ~~~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp TTSBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred cCCccccCCCcCccCCCceeeeCCCCCCE
Confidence 45899999999988887788899 68754
No 141
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.63 E-value=44 Score=26.22 Aligned_cols=62 Identities=10% Similarity=0.180 Sum_probs=37.9
Q ss_pred HHHhhcCCHHHHHHHHHHHHHh-hc--cCCCceeCCCCCCCceeeecCccc-cCCCCceeCCCccccc
Q 043865 16 FTCKLMIPSNLFSKWCDVLCED-YV--LGFERSYCPNRNCMALVVNEGEIN-YGTLKKARCPNCKQWF 79 (203)
Q Consensus 16 ~~i~~~l~~e~~~~y~~~~~~~-~i--~~~~~~~Cp~~~C~~~~~~~~~~~-~~~~~~~~C~~C~~~~ 79 (203)
+.+..-++++++..|++..... -+ ..-....|- +|...+++..... ..+...++||.||...
T Consensus 167 ~~l~~~i~~~lL~~Yerir~~~~g~avv~v~~~~C~--GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL 232 (256)
T 3na7_A 167 EDLVEKTEPKIYSFYERIRRWAKNTSIVTIKKQACG--GCFIRLNDKIYTEVLTSGDMITCPYCGRIL 232 (256)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHGGGSEEECBTTBCT--TTCCBCCHHHHHHHHHSSSCEECTTTCCEE
T ss_pred HHHHhcCCHHHHHHHHHHHHhCCCceEEEeeCCccC--CCCeeeCHHHHHHHHCCCCEEECCCCCeeE
Confidence 3455678999999999887642 22 111233565 5777776543211 0135679999998763
No 142
>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}
Probab=25.54 E-value=44 Score=21.61 Aligned_cols=40 Identities=13% Similarity=0.124 Sum_probs=21.8
Q ss_pred CCCceeCCCCCCCceeeecCcccc-CCCCceeCCCccccccc
Q 043865 41 GFERSYCPNRNCMALVVNEGEINY-GTLKKARCPNCKQWFCF 81 (203)
Q Consensus 41 ~~~~~~Cp~~~C~~~~~~~~~~~~-~~~~~~~C~~C~~~~C~ 81 (203)
+...+.|+.++ +....+.--++- +....+.||.|+..|=.
T Consensus 25 ~~~~V~CdGg~-g~LGHPrVyL~ld~~~g~~~CpYCg~~f~l 65 (80)
T 2jvm_A 25 STWKVACDGGE-GALGHPRVWLSIPHETGFVECGYCDRRYIH 65 (80)
T ss_dssp SCSEEEECCCS-TTCCCCCEEEECCTTTCEEECSSSSCEEEE
T ss_pred CCcEEEcCCCC-CCCCCCEEEEEccCCCCeEECCCCCCEEEe
Confidence 55678998754 211000000111 23567999999988743
No 143
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.76 E-value=23 Score=22.70 Aligned_cols=21 Identities=24% Similarity=0.737 Sum_probs=17.9
Q ss_pred CCceeCCCccccccccCCcCC
Q 043865 67 LKKARCPNCKQWFCFQCKVAW 87 (203)
Q Consensus 67 ~~~~~C~~C~~~~C~~C~~~~ 87 (203)
.....|+.|++..|.+|+...
T Consensus 40 ~~g~~C~~Ck~rVC~~Crv~~ 60 (76)
T 2csz_A 40 PKTNTCRGCNHLVCRDCRIQE 60 (76)
T ss_dssp TTTSEETTTTEECCTTSEEEC
T ss_pred cCCCcCcccChhhcccccccC
Confidence 456899999999999999764
No 144
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=24.75 E-value=14 Score=30.22 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=23.3
Q ss_pred hccCCCCCCCCceeEecC-CcceeEe-cccccc
Q 043865 113 RMHGARRPACGSCVERKE-GCRVMYC-RCKTSF 143 (203)
Q Consensus 113 ~~~~k~CP~C~~~iek~~-GCnhm~C-~C~~~F 143 (203)
+.-|.+||+|+..+...+ .=|...| .|++++
T Consensus 21 ~~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~ 53 (304)
T 2f9y_B 21 EGVWTKCDSCGQVLYRAELERNLEVCPKCDHHM 53 (304)
T ss_dssp --CEECCTTTCCCEETTHHHHTTTBCTTTCCBC
T ss_pred HHHHHhhhhccchhhHHHHHHHhCCCCCCCCCC
Confidence 345889999999998873 3377888 698886
No 145
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=24.51 E-value=89 Score=16.63 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=3.1
Q ss_pred HHHHhhhhhh
Q 043865 191 IYGIYCVIKR 200 (203)
Q Consensus 191 ~~~~~~~~~~ 200 (203)
+.-||+++|+
T Consensus 22 V~LI~f~~kA 31 (35)
T 2lk9_A 22 VPLIIFTIKK 31 (35)
T ss_dssp HHHHHHC---
T ss_pred chheEEeeec
Confidence 3344444443
No 146
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.28 E-value=36 Score=15.33 Aligned_cols=10 Identities=30% Similarity=0.521 Sum_probs=6.0
Q ss_pred eeCCCccccc
Q 043865 70 ARCPNCKQWF 79 (203)
Q Consensus 70 ~~C~~C~~~~ 79 (203)
..|+.|++.|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 4566666654
No 147
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=22.86 E-value=55 Score=25.81 Aligned_cols=45 Identities=33% Similarity=0.685 Sum_probs=25.1
Q ss_pred HHHhhccCCCceeCCCCCCCceee--ecCccccCCCCceeCCCccccccccCCc
Q 043865 34 LCEDYVLGFERSYCPNRNCMALVV--NEGEINYGTLKKARCPNCKQWFCFQCKV 85 (203)
Q Consensus 34 ~~~~~i~~~~~~~Cp~~~C~~~~~--~~~~~~~~~~~~~~C~~C~~~~C~~C~~ 85 (203)
++|..+ .+..|||+ |+..-+ .+.+ .....+.|+.|+..|=++=+.
T Consensus 26 LTE~Wv--~~n~yCPn--CG~~~l~~f~nN---~PVaDF~C~~C~EeyELKSk~ 72 (257)
T 4esj_A 26 LTEDWV--YRQSYCPN--CGNNPLNHFENN---RPVADFYCNHCSEEFELKSKK 72 (257)
T ss_dssp HHHHHH--HHHCCCTT--TCCSSCEEC-------CCCEEECTTTCCEEEEEEEE
T ss_pred hhHHHH--HHCCcCCC--CCChhhhhccCC---CcccccccCCcchhheecccc
Confidence 444444 24679995 887432 2222 225668999888776554443
No 148
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=22.85 E-value=37 Score=23.71 Aligned_cols=36 Identities=31% Similarity=0.708 Sum_probs=23.5
Q ss_pred CceeCCCCCCCceeeecCccccCCCCceeCCCccccccccCCcCC
Q 043865 43 ERSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQWFCFQCKVAW 87 (203)
Q Consensus 43 ~~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~~C~~C~~~~ 87 (203)
+...|. .|+..+.. . ..+..|..||..||.+|-...
T Consensus 18 ~~~~C~--~C~~~Fs~--~-----~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 18 LEPSCK--SCGAHFAN--T-----ARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp --CCCT--TTCCCCSS--G-----GGCEECTTTCCEECGGGEEC-
T ss_pred ccCccc--CcCCcccc--c-----cccccCCCCCCeeCHHHhCCC
Confidence 344565 46665432 1 457899999999999997644
No 149
>2jyd_A F5 domain of myelin transcription factor 1; zinc-finger, MYT1, alternative splicing, developmental protein, differentiation, DNA-binding; NMR {Mus musculus}
Probab=22.57 E-value=38 Score=19.47 Aligned_cols=12 Identities=33% Similarity=0.744 Sum_probs=9.2
Q ss_pred ccCCcccCCCcC
Q 043865 2 IECPGVHCDQFL 13 (203)
Q Consensus 2 I~CP~~~C~~~l 13 (203)
++||.++|+..-
T Consensus 10 ~~CPtpGC~G~G 21 (46)
T 2jyd_A 10 LKCPTPGCDGSG 21 (46)
T ss_dssp TSCSCSSCCSBS
T ss_pred CcCCCCCcCccC
Confidence 579999998643
No 150
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=22.05 E-value=66 Score=21.73 Aligned_cols=37 Identities=22% Similarity=0.570 Sum_probs=20.4
Q ss_pred hccCCCCCCCCc-eeEecCC---cceeEe-ccccccccccccc
Q 043865 113 RMHGARRPACGS-CVERKEG---CRVMYC-RCKTSFCYECGGN 150 (203)
Q Consensus 113 ~~~~k~CP~C~~-~iek~~G---Cnhm~C-~C~~~FC~~C~~~ 150 (203)
+..|. ||.|.. .+=...| =.-+.| .|...|=..|+.+
T Consensus 53 ~~~W~-C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p 94 (112)
T 3v43_A 53 ALRWQ-CIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDP 94 (112)
T ss_dssp TSCCC-CTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSS
T ss_pred ccccc-cccCCccccccCcCCCccceEEcCCCCCeeecccCCC
Confidence 44554 777742 1111111 235666 7888887888764
No 151
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.78 E-value=37 Score=21.39 Aligned_cols=11 Identities=18% Similarity=0.320 Sum_probs=7.1
Q ss_pred CCCCCCCceeE
Q 043865 117 ARRPACGSCVE 127 (203)
Q Consensus 117 k~CP~C~~~ie 127 (203)
..|+.|+..|.
T Consensus 16 ~~C~~C~~~I~ 26 (82)
T 2co8_A 16 DLCALCGEHLY 26 (82)
T ss_dssp CBCSSSCCBCC
T ss_pred CCCcccCCCcc
Confidence 45777776663
No 152
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.74 E-value=35 Score=19.81 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=20.6
Q ss_pred ccCCCCCCCCceeEecCCcceeEecccccccccccccCcC
Q 043865 114 MHGARRPACGSCVERKEGCRVMYCRCKTSFCYECGGNLKS 153 (203)
Q Consensus 114 ~~~k~CP~C~~~iek~~GCnhm~C~C~~~FC~~C~~~~~~ 153 (203)
.+.+.||+|++.....+-= +.|-+|-|+..++.
T Consensus 10 ~~~~~CPrCn~~f~~~~sL-------r~HmkycCp~~v~~ 42 (49)
T 2e72_A 10 GGRKICPRCNAQFRVTEAL-------RGHMCYCCPEMVEY 42 (49)
T ss_dssp SSCCCCTTTCCCCSSHHHH-------HHHHHHHCTTTCCC
T ss_pred CCceeCCcccccccchHHH-------HhhhhhcCcchhhh
Confidence 3568999999987543220 13345777776664
No 153
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.66 E-value=30 Score=21.35 Aligned_cols=37 Identities=14% Similarity=0.385 Sum_probs=23.0
Q ss_pred CCCCCCCceeEecCCcceeEeccccc-ccccccccCcCCCCCC
Q 043865 117 ARRPACGSCVERKEGCRVMYCRCKTS-FCYECGGNLKSASGCL 158 (203)
Q Consensus 117 k~CP~C~~~iek~~GCnhm~C~C~~~-FC~~C~~~~~~~~~C~ 158 (203)
..||-|...... .+.=.|||. ||+.|........-|+
T Consensus 26 ~~C~IC~~~~~~-----~~~~pCgH~~~C~~C~~~~~~CP~Cr 63 (75)
T 2ecg_A 26 KLCKICMDRNIA-----IVFVPCGHLVTCKQCAEAVDKCPMCY 63 (75)
T ss_dssp HSCSSSCSSCCC-----BCCSSSCCCCBCHHHHHHCSBCTTTC
T ss_pred CCCCcCCCCCCC-----EEEecCCCHHHHHHHhhCCCCCccCC
Confidence 479999765421 222268888 8888887665543343
No 154
>2zw3_A GAP junction beta-2 protein; ION channel, alpha helical membrane channel, two double layered lipid spanning, cellular adhesion, cell junction; 3.50A {Homo sapiens} PDB: 3iz1_A 3iz2_A
Probab=21.41 E-value=1.5e+02 Score=22.93 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=29.6
Q ss_pred CCCCCcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 043865 156 GCLCKEKGDVYCHHYCAIISGLILIFTVLGVLGGVIYGIYCVIKR 200 (203)
Q Consensus 156 ~C~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 200 (203)
+|++..+--......-++|+..++....+++++.++=-+|++.|+
T Consensus 173 PCp~~VdCfvSRPtEKtifl~fM~~vs~lsi~L~v~El~~l~~k~ 217 (226)
T 2zw3_A 173 PCPNTVDCFVSRPTEKTVFTVFMIAVSGICILLNVTELCYLLIRY 217 (226)
T ss_dssp TSSSSEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCeeeECCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466655544445556677777777788888887776666666654
No 155
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.22 E-value=41 Score=15.16 Aligned_cols=10 Identities=30% Similarity=0.820 Sum_probs=6.3
Q ss_pred eeCCCccccc
Q 043865 70 ARCPNCKQWF 79 (203)
Q Consensus 70 ~~C~~C~~~~ 79 (203)
..|+.|++.|
T Consensus 4 ~~C~~C~k~f 13 (28)
T 2kvf_A 4 YSCSVCGKRF 13 (28)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCCccc
Confidence 5676666654
No 156
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.86 E-value=47 Score=15.96 Aligned_cols=13 Identities=23% Similarity=0.463 Sum_probs=8.6
Q ss_pred CceeCCCcccccc
Q 043865 68 KKARCPNCKQWFC 80 (203)
Q Consensus 68 ~~~~C~~C~~~~C 80 (203)
....|+.|++.|=
T Consensus 6 k~~~C~~C~k~f~ 18 (35)
T 2elx_A 6 SGYVCALCLKKFV 18 (35)
T ss_dssp CSEECSSSCCEES
T ss_pred CCeECCCCcchhC
Confidence 4577887777653
No 157
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.73 E-value=42 Score=16.51 Aligned_cols=14 Identities=36% Similarity=1.027 Sum_probs=9.3
Q ss_pred CCceeCCCcccccc
Q 043865 67 LKKARCPNCKQWFC 80 (203)
Q Consensus 67 ~~~~~C~~C~~~~C 80 (203)
.....|+.|++.|=
T Consensus 9 ~k~~~C~~C~k~f~ 22 (37)
T 1p7a_A 9 IKPFQCPDCDRSFS 22 (37)
T ss_dssp SSSBCCTTTCCCBS
T ss_pred CCCccCCCCCcccC
Confidence 34577888877653
No 158
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=20.46 E-value=52 Score=24.40 Aligned_cols=29 Identities=24% Similarity=0.593 Sum_probs=18.4
Q ss_pred ceeCCCCCCCceeeecCccccCCCCceeCCCcccc
Q 043865 44 RSYCPNRNCMALVVNEGEINYGTLKKARCPNCKQW 78 (203)
Q Consensus 44 ~~~Cp~~~C~~~~~~~~~~~~~~~~~~~C~~C~~~ 78 (203)
+.-||+.+|+.-+..+. .....|+.|+..
T Consensus 43 Y~aC~~~~CnKKv~~~~------~g~~~CekC~~~ 71 (181)
T 1l1o_C 43 YQACPTQDCNKKVIDQQ------NGLYRCEKCDTE 71 (181)
T ss_dssp EEBCCSTTCCCBCEEET------TTEEEETTTTEE
T ss_pred ECCCCchhcCCccccCC------CCeEECCCCCCc
Confidence 35688777988766432 235677777654
No 159
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=20.35 E-value=23 Score=22.26 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=10.4
Q ss_pred cCCCCCCCCceeE
Q 043865 115 HGARRPACGSCVE 127 (203)
Q Consensus 115 ~~k~CP~C~~~ie 127 (203)
..+.||.|+..++
T Consensus 8 ~~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 8 ITVNCPTCGKTVV 20 (68)
T ss_dssp CEEECTTTCCEEE
T ss_pred CcCcCCCCCCccc
Confidence 4578999999886
No 160
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=20.08 E-value=41 Score=20.95 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=16.3
Q ss_pred CCceeCCCccccccccCCc
Q 043865 67 LKKARCPNCKQWFCFQCKV 85 (203)
Q Consensus 67 ~~~~~C~~C~~~~C~~C~~ 85 (203)
..+..|..||..||..|-.
T Consensus 25 ~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 25 NRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp BCCEECTTTCCEECGGGSC
T ss_pred cccccCCCCCEEEcccccC
Confidence 4578999999999999874
No 161
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.04 E-value=55 Score=26.71 Aligned_cols=34 Identities=32% Similarity=0.831 Sum_probs=24.9
Q ss_pred CCCCCCCce-----eE---ecCCcceeEe-cccccc------ccccccc
Q 043865 117 ARRPACGSC-----VE---RKEGCRVMYC-RCKTSF------CYECGGN 150 (203)
Q Consensus 117 k~CP~C~~~-----ie---k~~GCnhm~C-~C~~~F------C~~C~~~ 150 (203)
..||-||.. |. +.+|=-+++| .|+++| |-.||..
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 579999963 32 2477889999 799887 6678776
No 162
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.03 E-value=49 Score=16.17 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=9.8
Q ss_pred CCceeCCCcccccc
Q 043865 67 LKKARCPNCKQWFC 80 (203)
Q Consensus 67 ~~~~~C~~C~~~~C 80 (203)
.....|+.|++.|-
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2els_A 7 GKIFTCEYCNKVFK 20 (36)
T ss_dssp CCCEECTTTCCEES
T ss_pred CCCEECCCCCceeC
Confidence 45578888887764
Done!