BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043866
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DF7|A Chain A, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|B Chain B, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|C Chain C, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|D Chain D, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|E Chain E, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|F Chain F, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|G Chain G, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|H Chain H, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|I Chain I, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|J Chain J, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|K Chain K, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|L Chain L, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|M Chain M, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|N Chain N, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|O Chain O, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|P Chain P, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|Q Chain Q, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|R Chain R, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|S Chain S, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
pdb|2DF7|T Chain T, Crystal Structure Of Infectious Bursal Disease Virus Vp2
Subviral Particle
Length = 458
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 294 SRNLNRKYGELLLVNKGASERNNNLPKNIRLRAAIMKDLRSSGEVQELADIVKNGYKTKS 353
++NL Y LV++ + R++ LP + + + G + EL D+ NG + +
Sbjct: 89 AQNLPASYNYCRLVSRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSYNGLMSAT 148
Query: 354 GN---KIGFVIFPFSIALRDDPLDY 375
N KIG V+ + + P Y
Sbjct: 149 ANINDKIGNVLVGEGVTVLSLPTSY 173
>pdb|1WCD|J Chain J, Crystal Structure Of Ibdv T1 Virus-like Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
Length = 441
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 294 SRNLNRKYGELLLVNKGASERNNNLPKNIRLRAAIMKDLRSSGEVQELADIVKNGYKTKS 353
++NL Y LV++ + R++ LP + + + G + EL D+ NG + +
Sbjct: 89 AQNLPASYNYCRLVSRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSYNGLMSAT 148
Query: 354 GN---KIGFVIFPFSIALRDDPLDY 375
N KIG V+ + + P Y
Sbjct: 149 ANINDKIGNVLVGEGVTVLSLPTSY 173
>pdb|1WCE|A Chain A, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|B Chain B, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|C Chain C, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|D Chain D, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|E Chain E, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|F Chain F, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|G Chain G, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|H Chain H, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|I Chain I, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|J Chain J, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|K Chain K, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|L Chain L, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
pdb|1WCE|M Chain M, Crystal Structure Of The T13 Ibdv Viral Particle Reveals A
Missing Link In Icosahedral Viruses Evolution
Length = 441
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 294 SRNLNRKYGELLLVNKGASERNNNLPKNIRLRAAIMKDLRSSGEVQELADIVKNGYKTKS 353
++NL Y LV++ + R++ LP + + + G + EL D+ NG + +
Sbjct: 89 AQNLPASYNYCRLVSRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSYNGLMSAT 148
Query: 354 GN---KIGFVIFPFSIALRDDPLDY 375
N KIG V+ + + P Y
Sbjct: 149 ANINDKIGNVLVGEGVTVLSLPTSY 173
>pdb|3FBM|A Chain A, D431n Mutant Vp2 Protein Of Infectious Bursal Disease
Virus; Derived T1 Particles
Length = 452
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 294 SRNLNRKYGELLLVNKGASERNNNLPKNIRLRAAIMKDLRSSGEVQELADIVKNGYKTKS 353
++NL Y LV++ + R++ LP + + + G + EL D+ NG + +
Sbjct: 89 AQNLPASYNYCRLVSRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSYNGLMSAT 148
Query: 354 GN---KIGFVIFPFSIALRDDPLDY 375
N KIG V+ + + P Y
Sbjct: 149 ANINDKIGNVLVGEGVTVLSLPTSY 173
>pdb|2GSY|A Chain A, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|B Chain B, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|C Chain C, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|D Chain D, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|E Chain E, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|F Chain F, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|G Chain G, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|H Chain H, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|I Chain I, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|J Chain J, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|K Chain K, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|L Chain L, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|M Chain M, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|N Chain N, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|O Chain O, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|P Chain P, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|Q Chain Q, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|R Chain R, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|S Chain S, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
pdb|2GSY|T Chain T, The 2.6a Structure Of Infectious Bursal Virus Derived T1
Particles
Length = 456
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 294 SRNLNRKYGELLLVNKGASERNNNLPKNIRLRAAIMKDLRSSGEVQELADIVKNGYKTKS 353
++NL Y LV++ + R++ LP + + + G + EL D+ NG + +
Sbjct: 89 AQNLPASYNYCRLVSRSLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDVSYNGLMSAT 148
Query: 354 GN---KIGFVIFPFSIALRDDPLDY 375
N KIG V+ + + P Y
Sbjct: 149 ANINDKIGNVLVGEGVTVLSLPTSY 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,271,512
Number of Sequences: 62578
Number of extensions: 538532
Number of successful extensions: 1202
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1196
Number of HSP's gapped (non-prelim): 7
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)