BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043869
         (450 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EW3|A Chain A, Crystal Structure Of The Major Horse Allergen Equ C 1
          Length = 159

 Score = 32.0 bits (71), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 198 PLNLDKNGH--LFLLNSTGFNIKNLTEEETPIQGMMYLMKIDSDGIFRLYSYNLR 250
           P+  DK     ++ LN  G+N+  ++E E     ++YL+  D D  F+L+ +  R
Sbjct: 65  PMVFDKTEEDGVYSLNYDGYNVFRISEFENDEHIILYLVNFDKDRPFQLFEFYAR 119


>pdb|2IS1|A Chain A, Crystal Structure Of Uvrd-Dna-So4 Complex
 pdb|2IS1|B Chain B, Crystal Structure Of Uvrd-Dna-So4 Complex
 pdb|2IS2|A Chain A, Crystal Structure Of Uvrd-Dna Binary Complex
 pdb|2IS2|B Chain B, Crystal Structure Of Uvrd-Dna Binary Complex
 pdb|2IS4|A Chain A, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
 pdb|2IS4|B Chain B, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
 pdb|2IS6|A Chain A, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
 pdb|2IS6|B Chain B, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
          Length = 680

 Score = 30.0 bits (66), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 201 LDKNGHLFLLNSTGFNIKNLTEEE-TPIQGMMYLMKIDSDGI--FRLYSYNLRWQNSTWS 257
           LD    L LL        NL E++  P Q M Y+     +G+    + SY    +  TW 
Sbjct: 114 LDSEDQLRLLKRL-IKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQ-TWQ 171

Query: 258 EVWPSTSEKCDPIGLCGFNSFCV 280
           +V+ +  E CD  GL  F    +
Sbjct: 172 KVYQAYQEACDRAGLVDFAELLL 194


>pdb|3LFU|A Chain A, Crystal Structure Of E. Coli Uvrd
          Length = 647

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 5/83 (6%)

Query: 201 LDKNGHLFLLNSTGFNIKNLTEEE-TPIQGMMYLMKIDSDGI--FRLYSYNLRWQNSTWS 257
           LD    L LL        NL E++  P Q M Y+     +G+    + SY    +  TW 
Sbjct: 114 LDSEDQLRLLKRL-IKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQ-TWQ 171

Query: 258 EVWPSTSEKCDPIGLCGFNSFCV 280
           +V+ +  E CD  GL  F    +
Sbjct: 172 KVYQAYQEACDRAGLVDFAELLL 194


>pdb|1XD5|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
           Binding Lectins From Gastrodia Elata
 pdb|1XD5|B Chain B, Crystal Structures Of Novel Monomeric Monocot Mannose-
           Binding Lectins From Gastrodia Elata
 pdb|1XD5|C Chain C, Crystal Structures Of Novel Monomeric Monocot Mannose-
           Binding Lectins From Gastrodia Elata
 pdb|1XD5|D Chain D, Crystal Structures Of Novel Monomeric Monocot Mannose-
           Binding Lectins From Gastrodia Elata
          Length = 112

 Score = 28.9 bits (63), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%)

Query: 178 LKMQNDGNLVQYPKNTPDTAPLNLDKNGHLFLL 210
           LKMQNDGNLV Y  +    A     +NG+ +L+
Sbjct: 54  LKMQNDGNLVIYSGSRAIWASNTNRQNGNYYLI 86


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,659,661
Number of Sequences: 62578
Number of extensions: 570031
Number of successful extensions: 1262
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1257
Number of HSP's gapped (non-prelim): 15
length of query: 450
length of database: 14,973,337
effective HSP length: 102
effective length of query: 348
effective length of database: 8,590,381
effective search space: 2989452588
effective search space used: 2989452588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)