BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043870
(526 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 505 bits (1301), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/425 (56%), Positives = 314/425 (73%), Gaps = 7/425 (1%)
Query: 104 TRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNL 163
TRL+PLT +RAKPAVP+G YRLID+P+SNC+NS I KIY+LTQFNS SLNRH+SR Y
Sbjct: 32 TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS 91
Query: 164 GDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH 223
G +GFVEVLAA +Q WFQGTADAVRQ++W+FE+ H +E LIL+GDH
Sbjct: 92 NMGGYKNEGFVEVLAA--QQSPENPDWFQGTADAVRQYLWLFEE--HTVLE-YLILAGDH 146
Query: 224 LYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRS 283
LYRMDY F+Q H + DI+V LP+DE RA+ FGLMKIDE GRI +F EKP+GE L++
Sbjct: 147 LYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQA 206
Query: 284 MQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSEVIPMATK-D 342
M++DTT LGL + A+ P+IASMGIY+ +V+L +LR +P ANDFGSEVIP AT
Sbjct: 207 MKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLG 266
Query: 343 FNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP-PKFHFYDPQKPIFTSPRFLPPSKIEKC 401
VQAYL++ YWEDIGTI++F++ANL +T KP P F FYD PI+T PR+LPPSK+
Sbjct: 267 MRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPPSKMLDA 326
Query: 402 RVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGK 461
V DS+I GC ++ C + HS+VG+RS + G ++D+++MGADYY+T+A+ L A+G
Sbjct: 327 DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGS 386
Query: 462 VPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIK 521
VP+GIG++ IK IIDKNA+IG NV I NKD V+EA R +DG++I+SGI V+K+ I
Sbjct: 387 VPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIP 446
Query: 522 DGTII 526
G II
Sbjct: 447 SGIII 451
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
Agrobacterium Tumefaciens
Length = 420
Score = 202 bits (515), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 136/419 (32%), Positives = 207/419 (49%), Gaps = 72/419 (17%)
Query: 97 ILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRH 156
+L GG G+RL LT RRAKPAV GG R+ID +SN +NSGI++I + TQ+ + SL RH
Sbjct: 17 VLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRH 76
Query: 157 ISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENI 216
+ R ++ + F ++L A+QR E+ +W++GTADAV Q I + E E
Sbjct: 77 LQRGWDFFRPER-NESF-DILPASQRVSET--QWYEGTADAVYQNIDIIEPYAP---EYX 129
Query: 217 LILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEKP 276
+IL+GDH+Y+ DY +Q H++SG D+++ CL V A+ FG+ ++E I F+EKP
Sbjct: 130 VILAGDHIYKXDYEYXLQQHVDSGADVTIGCLEVPRXEATGFGVXHVNEKDEIIDFIEKP 189
Query: 277 KGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE---ANDFGS 333
G+ E +AS GIY+F T+ L + +R + + DFG
Sbjct: 190 -----------ADPPGIPGNEGFA---LASXGIYVFHTKFLXEAVRRDAADPTSSRDFGK 235
Query: 334 EVIPMATKDFNVQAYLFND-----------YWEDIGTIKSFFDANLSLTDKPPKFHFYDP 382
++IP + A+ F D YW D+GTI +++ AN+ LTD P YD
Sbjct: 236 DIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDK 295
Query: 383 QKPIFTSPRFLPPSKI------EKCRVQDSIISHGCFLRECSVEHSIV--GIR----SRL 430
PI+T PP+K + S++S C + ++ S++ G+R SRL
Sbjct: 296 SWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRL 355
Query: 431 EYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVII 489
E V L V IGR ++ N +ID I + +I+
Sbjct: 356 ENAVVLPS-------------------------VKIGRHAQLSNVVIDHGVVIPEGLIV 389
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 29/184 (15%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
I+L GG+GTRL+P+T +K +PI +I P+S + +GI+ I I++ L R
Sbjct: 7 IVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYR 65
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAV---RQFIWMFEDAKHRN 212
+ LGDG FG F + R G ADA + FI D+K
Sbjct: 66 DL-----LGDGSQFGVRFSYRVQEEPR----------GIADAFIVGKDFIG---DSK--- 104
Query: 213 IENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQF 272
L+L + Y + + ++ + + V + R FG+++ D GR+
Sbjct: 105 --VALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYYVRDPRP--FGVVEFDSEGRVISI 160
Query: 273 LEKP 276
EKP
Sbjct: 161 EEKP 164
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
Glucose-1-Phosphate Thymidylyltransferase From Bacillus
Anthracis In Complex With A Sucrose.
pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
Thymidylyltransferase From Bacillus Anthracis In Complex
With Thymidine-5-Diphospho-Alpha-D-Glucose And
Pyrophosphate
Length = 269
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 27/187 (14%)
Query: 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQ 151
A+ IIL GG G+RL+P+T K +P+ G Y +I + I I I+T
Sbjct: 24 AMKGIILAGGTGSRLYPITKVTNKHLLPV-GRYPMIYHAVYKLKQCDITDIMIITG---- 78
Query: 152 SLNRHISRTYN-LGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKH 210
H+ + LG G FG F T R Q A + Q + + ED
Sbjct: 79 --KEHMGDVVSFLGSGQEFGVSF------TYR--------VQDKAGGIAQALGLCEDFVG 122
Query: 211 RNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIR 270
+ ++++ GD+++ D +V+ N V VD+ FG+ I + +I
Sbjct: 123 N--DRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVDDPER--FGVANI-QNRKII 177
Query: 271 QFLEKPK 277
+ EKPK
Sbjct: 178 EIEEKPK 184
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNS 150
K IIL GG+GTRL+P+T ++ +PI +I P+S + +GI+ I I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 151 QSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKH 210
+ + LGDG +G + + GTA A FI E H
Sbjct: 61 TPRFQQL-----LGDGSQWGLNLQYKVQPSP----------DGTAQA---FIIGEEFIGH 102
Query: 211 RNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIR 270
+ L+L + Y D ++ +N +V V++ +G+++ D+ G
Sbjct: 103 DDCA--LVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQAGTAV 158
Query: 271 QFLEKP 276
EKP
Sbjct: 159 SLEEKP 164
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 25/187 (13%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNS 150
K IIL GG+GTRL+P+T ++ +PI +I P+S + +GI+ I I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 151 QSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQ-FIWMFEDAK 209
+ + LGDG +G + Q + D + Q FI E
Sbjct: 61 TPRFQQL-----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIG 101
Query: 210 HRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRI 269
H + L+L + Y D ++ +N +V V++ +G+++ D+ G
Sbjct: 102 HDDCA--LVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQAGTA 157
Query: 270 RQFLEKP 276
EKP
Sbjct: 158 VSLEEKP 164
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 25/187 (13%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNS 150
K IIL GG+GTRL+P+T ++ +PI +I P+S + +GI+ I I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 151 QSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQ-FIWMFEDAK 209
+ + LGDG +G + Q + D + Q FI E
Sbjct: 61 TPRFQQL-----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIG 101
Query: 210 HRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRI 269
H + L+L + Y D ++ +N +V V++ +G+++ D+ G
Sbjct: 102 HDDCA--LVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQAGTA 157
Query: 270 RQFLEKP 276
EKP
Sbjct: 158 VSLEEKP 164
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNS 150
K IIL GG+GTRL+P+T +K +PI +I P+S + +GI+ I I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 151 QSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKH 210
+ + LGDG +G ++ + G A A FI E H
Sbjct: 61 TPRFQQL-----LGDGSQWGLNLQYKVSPSP----------DGLAQA---FIIGEEFIGH 102
Query: 211 RNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIR 270
+ L+L + Y D ++ +N +V V++ +G+++ D+ G
Sbjct: 103 DDCA--LVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQKGTAV 158
Query: 271 QFLEKP 276
EKP
Sbjct: 159 SLEEKP 164
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 25/187 (13%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNS 150
K IIL GG+GTRL+P+T ++ +PI +I P+S + +GI+ I I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 151 QSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQ-FIWMFEDAK 209
+ + LGDG +G + Q + D + Q FI E
Sbjct: 61 TPRFQQL-----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIG 101
Query: 210 HRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRI 269
H + L+L + Y D ++ +N +V V++ +G+++ D+ G
Sbjct: 102 HDDCA--LVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQKGTA 157
Query: 270 RQFLEKP 276
EKP
Sbjct: 158 VSLEEKP 164
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 23/181 (12%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL GG+GTRL+P+T +K +PI +I P+S + +GI+ I I++ +
Sbjct: 7 IILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQ 65
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ LGDG +G + Q + D + Q + E+ + +
Sbjct: 66 QL-----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGAD-DC 105
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
L+L + Y D ++ +N +V V++ +G+++ D+ G EK
Sbjct: 106 ALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDKNGTAISLEEK 163
Query: 276 P 276
P
Sbjct: 164 P 164
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 23/186 (12%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNS 150
K IIL GG+GTRL+P+T +K +PI +I P+S + +GI+ I I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQD 60
Query: 151 QSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKH 210
+ + LGDG +G + + G A A FI E H
Sbjct: 61 TPRFQQL-----LGDGSQWGLNLQYKVDPSP----------DGLAQA---FIIGEEFIGH 102
Query: 211 RNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIR 270
+ L+L + Y D ++ +N +V V++ +G+++ D+ G
Sbjct: 103 DDCA--LVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDQKGTAV 158
Query: 271 QFLEKP 276
EKP
Sbjct: 159 SLEEKP 164
>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 23/181 (12%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL GG+GTRL+P+T +K +PI +I P+S + +GI+ I I++ +
Sbjct: 7 IILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQ 65
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ LGDG +G + Q + D + Q + E+ + +
Sbjct: 66 QL-----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGGD-DC 105
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
L+L + Y D ++ +N +V V++ +G+++ D+ G EK
Sbjct: 106 ALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDKNGTAISLEEK 163
Query: 276 P 276
P
Sbjct: 164 P 164
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 23/181 (12%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL GG+GTRL+P+T +K +PI +I P+S + +GI+ I I++ +
Sbjct: 7 IILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQ 65
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ LGDG +G + Q + D + Q + E+ + +
Sbjct: 66 QL-----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGGD-DC 105
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
L+L + Y D ++ +N +V V++ +G+++ D+ G EK
Sbjct: 106 ALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDKNGTAISLEEK 163
Query: 276 P 276
P
Sbjct: 164 P 164
>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 23/181 (12%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL GG+GTRL+P+T +K +PI +I P+S + +GI+ I I++ +
Sbjct: 7 IILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQ 65
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ LGDG +G + Q + D + Q + E+ + +
Sbjct: 66 QL-----LGDGSQWGLNL--------------QYKVQPSPDGLAQAFIIGEEFIGGD-DC 105
Query: 216 ILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEK 275
L+L + Y D ++ +N +V V++ +G+++ D+ G EK
Sbjct: 106 ALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVEFDKNGTAISLEEK 163
Query: 276 P 276
P
Sbjct: 164 P 164
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 303
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 27/183 (14%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL GG+GTRL P T +K +P+ +I P+S + +GI++I I++ +
Sbjct: 16 IILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQ 74
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ LGDG N+G +++ A Q + D + Q + E ++
Sbjct: 75 QL-----LGDGSNWG---LDLQYAVQP-----------SPDGLAQAFLIGESFIGNDLSA 115
Query: 216 ILILSGDHLYR-MDYMDFVQHHINSGGDISVCCLPV-DESRASDFGLMKIDETGRIRQFL 273
+++ GD+LY D+ + + SV V D R +G+++ D+ G+
Sbjct: 116 LVL--GDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPER---YGVVEFDQGGKAISLE 170
Query: 274 EKP 276
EKP
Sbjct: 171 EKP 173
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 302
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 27/183 (14%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL GG+GTRL P T +K +P+ +I P+S + +GI++I I++ +
Sbjct: 15 IILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQ 73
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ LGDG N+G +++ A Q + D + Q + E ++
Sbjct: 74 QL-----LGDGSNWG---LDLQYAVQP-----------SPDGLAQAFLIGESFIGNDLSA 114
Query: 216 ILILSGDHLYR-MDYMDFVQHHINSGGDISVCCLPV-DESRASDFGLMKIDETGRIRQFL 273
+++ GD+LY D+ + + SV V D R +G+++ D+ G+
Sbjct: 115 LVL--GDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPER---YGVVEFDQGGKAISLE 169
Query: 274 EKP 276
EKP
Sbjct: 170 EKP 172
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|4ASJ|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 293
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 27/183 (14%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL GG+GTRL P T +K +P+ +I P+S + +GI++I I++ +
Sbjct: 6 IILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQ 64
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ LGDG N+G +++ A Q + D + Q + E ++
Sbjct: 65 QL-----LGDGSNWG---LDLQYAVQP-----------SPDGLAQAFLIGESFIGNDLSA 105
Query: 216 ILILSGDHLYR-MDYMDFVQHHINSGGDISVCCLPV-DESRASDFGLMKIDETGRIRQFL 273
+++ GD+LY D+ + + SV V D R +G+++ D+ G+
Sbjct: 106 LVL--GDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPER---YGVVEFDQGGKAISLE 160
Query: 274 EKP 276
EKP
Sbjct: 161 EKP 163
>pdb|1MC3|A Chain A, Crystal Structure Of Rffh
pdb|1MC3|B Chain B, Crystal Structure Of Rffh
Length = 296
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYR--LIDVPMSNCINSGIKKIYILTQFNSQSL 153
IIL GG+GTRL P+T +K +PI Y I P+S +GI++I I+T +
Sbjct: 7 IILAGGSGTRLHPITRGVSKQLLPI---YDKPXIYYPLSVLXLAGIREILIITTPEDKGY 63
Query: 154 NRHISRTYNLGDGMNFG 170
+ + LGDG FG
Sbjct: 64 FQRL-----LGDGSEFG 75
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex
Length = 293
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 96 IILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNR 155
IIL GG+GTRL P T +K +P+ I P+S +GI++I I++ +
Sbjct: 6 IILAGGSGTRLHPATLAISKQLLPVYDK-PXIYYPLSTLXLAGIREILIISTPQDTPRFQ 64
Query: 156 HISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIEN 215
+ LGDG N+G +++ A Q + D + Q + E ++
Sbjct: 65 QL-----LGDGSNWG---LDLQYAVQP-----------SPDGLAQAFLIGESFIGNDLSA 105
Query: 216 ILILSGDHLYR-MDYMDFVQHHINSGGDISVCCLPV-DESRASDFGLMKIDETGRIRQFL 273
+++ GD+LY D+ + + SV V D R +G+++ D+ G+
Sbjct: 106 LVL--GDNLYYGHDFHELLGSASQRQTGASVFAYHVLDPER---YGVVEFDQGGKAISLE 160
Query: 274 EKP 276
EKP
Sbjct: 161 EKP 163
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPM-----SNCINSGIKKIYIL 145
K ++I G GTR+ P T K +P L+D P+ + CI +GI +I ++
Sbjct: 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLP------LVDKPLIQYVVNECIAAGITEIVLV 60
Query: 146 TQFNSQSLNRHISRTYNL 163
T + S+ H ++ L
Sbjct: 61 THSSKNSIENHFDTSFEL 78
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 100/276 (36%), Gaps = 62/276 (22%)
Query: 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLN 154
+ IL G+G RL P+T R K VPI LI+ + GI+ I ++ ++
Sbjct: 3 AFILAAGSGERLEPITHTRPKAFVPIL-SKPLIEYQIEYLRKCGIRDITVIVSSKNKEY- 60
Query: 155 RHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIE 214
F E+ TQ+ +GT A+ F D
Sbjct: 61 --------------FEKKLKEISIVTQKDD------IKGTGAAILSA--KFNDEA----- 93
Query: 215 NILILSGDHLY--RMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETGRIRQF 272
LI+ GD + + + + N+ + V S D+G++ +D + +
Sbjct: 94 --LIIYGDLFFSNEKEICNIITLKENA-------IIGVKVSNPKDYGVLVLDNQNNLSKI 144
Query: 273 LEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFG 332
+EKP +I + L + GIY +++ + + E +
Sbjct: 145 IEKP--------EIPPSNL-------------INAGIYKLNSDIFTYLDKISISERGELE 183
Query: 333 -SEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDAN 367
++ I + KD V+ + YW DIG + D N
Sbjct: 184 LTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVN 219
>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase From Salmonella Typhi
pdb|1WVC|A Chain A, Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed
With Ctp
Length = 259
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 80/199 (40%), Gaps = 28/199 (14%)
Query: 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIK--------KIY 143
A ++IL GG GTRL T + KP V IGG L + M GIK K Y
Sbjct: 2 ASKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHI-MKMYSVHGIKDFIICCGYKGY 60
Query: 144 ILTQFNSQSLNRHISRTYNLGDG-MNFGDGFVEVLAATQ-RQGESGKKWFQGTADAVRQF 201
++ ++ + T+++ + M VE T G+S G V ++
Sbjct: 61 VIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMT--GGRLKRVAEY 118
Query: 202 IWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISV-CCLPVDESRASDFGL 260
+ ++ E L GD + +D + H G ++ P FG
Sbjct: 119 V--------KDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFP-----PGRFGA 165
Query: 261 MKIDETGRIRQFLEKPKGE 279
+ I + G++R F EKPKG+
Sbjct: 166 LDI-QAGQVRSFQEKPKGD 183
>pdb|2JQN|A Chain A, Solution Nmr Structure Of Cc0527 From Caulobacter
Crescentus. Northeast Structural Genomics Target Ccr55
Length = 122
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 164 GDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAV 198
G ++ DGF+ + A Q Q E+ KWF+G A+ V
Sbjct: 24 GSAVDLADGFIHLSAGEQAQ-ETAAKWFRGQANLV 57
>pdb|2O0Q|A Chain A, X-Ray Crystal Structure Of Protein Cc0527 From Caulobacter
Crescentus. Northeast Structural Genomics Consortium
Target Ccr55
Length = 115
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 164 GDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAV 198
G ++ DGF+ + A Q Q E+ KWF+G A+ V
Sbjct: 24 GSAVDLADGFIHLSAGEQAQ-ETAAKWFRGQANLV 57
>pdb|2O0P|A Chain A, X-Ray Crystal Structure Of Protein Cc0527 (V27m L66M
Double Mutant) From Caulobacter Crescentus. Northeast
Structural Genomics Consortium Target Ccr55
Length = 122
Score = 32.3 bits (72), Expect = 0.64, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 164 GDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAV 198
G + DGF+ + A Q Q E+ KWF+G A+ V
Sbjct: 24 GSAXDLADGFIHLSAGEQAQ-ETAAKWFRGQANLV 57
>pdb|2OZP|A Chain A, Crystal Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
Reductase (Ttha1904) From Thermus Thermophilus
Length = 345
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%)
Query: 378 HFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELK 437
HF P T+ +F+PP K+E + + HG F RE ++ + L LK
Sbjct: 46 HFVHPNLRGRTNLKFVPPEKLEPADILVLALPHGVFAREFDRYSALAPVLVDLSADFRLK 105
Query: 438 DTMM 441
D +
Sbjct: 106 DPEL 109
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQF 148
V +IIL G GTRL PLT K V + LI+ + GI I I+ +
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGY 80
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQF 148
V +IIL G GTRL PLT K V + LI+ + GI I I+ +
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGY 80
>pdb|3RSB|A Chain A, Structure Of The Archaeal Gtp:adocbi-P Guanylyltransferase
(Coby) From Methanocaldococcus Jannaschii
pdb|3RSB|B Chain B, Structure Of The Archaeal Gtp:adocbi-P Guanylyltransferase
(Coby) From Methanocaldococcus Jannaschii
pdb|3RSB|C Chain C, Structure Of The Archaeal Gtp:adocbi-P Guanylyltransferase
(Coby) From Methanocaldococcus Jannaschii
pdb|3RSB|D Chain D, Structure Of The Archaeal Gtp:adocbi-P Guanylyltransferase
(Coby) From Methanocaldococcus Jannaschii
Length = 196
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 95 SIILGGGAGTRLFPLTGRRAKPAVPIGG-CYRLIDVPMSNCINSGIKKIYILTQFNSQSL 153
++I GG GTR G KP + + G C LID +S + S + I+I T N+
Sbjct: 3 ALIXAGGKGTR----XGGVEKPLIKLCGRC--LIDYVVSPLLKSKVNNIFIATSPNTPKT 56
Query: 154 NRHISRTY 161
+I+ Y
Sbjct: 57 KEYINSAY 64
>pdb|4AUE|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUE|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 717
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 214 ENILILSGDH--LYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDET 266
E +LSG + +R D D ++ +G + VC VDES+A FG +D T
Sbjct: 278 EEAQVLSGKNADFHRQDLWDAIES--GNGPEWDVCVQIVDESQAQAFGFDLLDPT 330
>pdb|4AUN|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|E Chain E, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|F Chain F, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|G Chain G, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUN|H Chain H, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 214 ENILILSGDH--LYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDET 266
E +LSG + +R D D ++ +G + VC VDES+A FG +D T
Sbjct: 280 EEAQVLSGKNADFHRQDLWDAIES--GNGPEWDVCVQIVDESQAQAFGFDLLDPT 332
>pdb|4AUL|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUL|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 214 ENILILSGDH--LYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDET 266
E +LSG + +R D D ++ +G + VC VDES+A FG +D T
Sbjct: 280 EEAQVLSGKNADFHRQDLWDAIES--GNGPEWDVCVQIVDESQAQAFGFDLLDPT 332
>pdb|4AUM|A Chain A, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|B Chain B, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|C Chain C, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
pdb|4AUM|D Chain D, Crystal Structure, Recombinant Expression And Mutagenesis
Studies Of The Bifunctional Catalase-phenol Oxidase From
Scytalidium Thermophilum
Length = 719
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 214 ENILILSGDH--LYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDET 266
E +LSG + +R D D ++ +G + VC VDES+A FG +D T
Sbjct: 280 EEAQVLSGKNADFHRQDLWDAIES--GNGPEWDVCVQIVDESQAQAFGFDLLDPT 332
>pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|B Chain B, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|C Chain C, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|D Chain D, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUK|A Chain A, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|B Chain B, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|C Chain C, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|D Chain D, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
Length = 281
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 99 GGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHIS 158
G GTR P+T K +PI LI + + +G + + I+T N +SL +
Sbjct: 9 AAGYGTRFLPITKTIPKEMLPIVD-KPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFD 67
Query: 159 RTYNL 163
+Y +
Sbjct: 68 TSYEI 72
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 124 YRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG-DGF------VEV 176
+ I P S+C N+ K+IY S LNR++ G ++F DG+ V +
Sbjct: 280 HSFIPEPKSSCYNTHEKRIY-----QSNMLNRYLINVTFEGRDLSFSEDGYQMHPKLVII 334
Query: 177 LAATQRQGESGKKWFQGTADAVRQFIW 203
L +R+ E KW + + ++ ++W
Sbjct: 335 LLNKERKWERVGKW-KDKSLQMKYYVW 360
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 124 YRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG-DGF------VEV 176
+ I P S+C N+ K+IY S LNR++ G ++F DG+ V +
Sbjct: 281 HSFIPEPKSSCYNTHEKRIY-----QSNMLNRYLINVTFEGRDLSFSEDGYQMHPKLVII 335
Query: 177 LAATQRQGESGKKWFQGTADAVRQFIW 203
L +R+ E KW + + ++ ++W
Sbjct: 336 LLNKERKWERVGKW-KDKSLQMKYYVW 361
>pdb|2XME|A Chain A, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|B Chain B, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|C Chain C, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|D Chain D, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|E Chain E, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|F Chain F, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|G Chain G, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|H Chain H, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|I Chain I, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|J Chain J, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|K Chain K, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|L Chain L, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|A Chain A, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|B Chain B, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|C Chain C, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|D Chain D, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|E Chain E, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|F Chain F, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
Length = 232
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGC 123
K + ++IL G GTRL G KP V +GGC
Sbjct: 17 KLMKAVILAAGLGTRL----GGVPKPLVRVGGC 45
>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate
Length = 297
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 101 GAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRT 160
G GTR P T K +P+ LI + + +GI+++ +T +L H
Sbjct: 23 GLGTRFLPATKAMPKEMLPVVD-RPLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIA 81
Query: 161 YNLGDGMNFGDGFVEVLAATQ 181
Y L M ++VL T+
Sbjct: 82 YELEATMAARGKSLDVLDGTR 102
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 150 SQSLNRHISRTYNLGDGMNFGDGFVEVLAATQ 181
SQ NR S NLGD +G G + V AA Q
Sbjct: 243 SQVRNRLSSTATNLGDSFYYGKGLINVEAAAQ 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,819,006
Number of Sequences: 62578
Number of extensions: 683610
Number of successful extensions: 1632
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1592
Number of HSP's gapped (non-prelim): 49
length of query: 526
length of database: 14,973,337
effective HSP length: 103
effective length of query: 423
effective length of database: 8,527,803
effective search space: 3607260669
effective search space used: 3607260669
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)