Query 043870
Match_columns 526
No_of_seqs 333 out of 3000
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:05:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1322 GDP-mannose pyrophosph 100.0 2E-71 4.3E-76 542.6 32.4 361 91-521 8-371 (371)
2 COG0448 GlgC ADP-glucose pyrop 100.0 4.1E-71 8.8E-76 559.6 35.2 386 90-525 3-392 (393)
3 PLN02241 glucose-1-phosphate a 100.0 1.4E-65 3E-70 548.2 44.7 435 90-526 1-436 (436)
4 PRK02862 glgC glucose-1-phosph 100.0 4E-62 8.6E-67 520.4 43.1 427 91-526 2-429 (429)
5 PRK05293 glgC glucose-1-phosph 100.0 8.4E-55 1.8E-59 457.8 40.9 374 90-526 1-379 (380)
6 PRK00844 glgC glucose-1-phosph 100.0 1.3E-54 2.8E-59 460.1 42.0 384 90-520 3-407 (407)
7 PRK00725 glgC glucose-1-phosph 100.0 5.2E-53 1.1E-57 449.8 42.2 387 90-521 13-420 (425)
8 COG1208 GCD1 Nucleoside-diphos 100.0 9.2E-50 2E-54 414.6 36.6 352 92-526 1-357 (358)
9 TIGR02091 glgC glucose-1-phosp 100.0 2.1E-49 4.5E-54 414.1 37.8 356 95-491 1-361 (361)
10 TIGR02092 glgD glucose-1-phosp 100.0 1.3E-49 2.9E-54 416.9 36.1 350 92-492 2-356 (369)
11 TIGR01208 rmlA_long glucose-1- 100.0 3E-45 6.4E-50 381.7 36.9 326 94-490 1-338 (353)
12 COG1207 GlmU N-acetylglucosami 100.0 2.8E-43 6E-48 356.5 30.7 375 92-526 2-430 (460)
13 PRK14355 glmU bifunctional N-a 100.0 1.4E-42 3E-47 373.9 37.6 389 91-526 2-430 (459)
14 PRK14352 glmU bifunctional N-a 100.0 2E-42 4.3E-47 374.7 35.1 389 90-526 2-432 (482)
15 PRK14359 glmU bifunctional N-a 100.0 3.1E-41 6.8E-46 360.3 36.4 375 91-526 1-400 (430)
16 PRK14358 glmU bifunctional N-a 100.0 1.5E-41 3.2E-46 367.3 34.2 385 90-526 5-432 (481)
17 PRK09451 glmU bifunctional N-a 100.0 2.1E-41 4.5E-46 364.5 33.2 378 89-526 2-427 (456)
18 TIGR01173 glmU UDP-N-acetylglu 100.0 4.2E-41 9.1E-46 361.3 34.2 375 93-526 1-423 (451)
19 KOG1460 GDP-mannose pyrophosph 100.0 8.5E-42 1.8E-46 329.1 20.9 332 92-492 2-358 (407)
20 PRK14353 glmU bifunctional N-a 100.0 1.6E-39 3.4E-44 348.9 36.9 371 89-526 2-413 (446)
21 PRK14356 glmU bifunctional N-a 100.0 1.2E-39 2.6E-44 350.7 35.1 381 92-526 5-431 (456)
22 PRK14357 glmU bifunctional N-a 100.0 1.4E-39 3E-44 349.5 34.9 370 93-526 1-416 (448)
23 PRK14354 glmU bifunctional N-a 100.0 1.4E-39 3E-44 350.4 34.4 379 91-526 1-426 (458)
24 PRK14360 glmU bifunctional N-a 100.0 1.9E-38 4.1E-43 340.9 35.2 375 93-526 2-423 (450)
25 COG1209 RfbA dTDP-glucose pyro 100.0 1E-38 2.2E-43 307.9 21.4 233 93-372 1-237 (286)
26 PF00483 NTP_transferase: Nucl 100.0 4.3E-37 9.4E-42 303.9 25.0 240 94-372 1-247 (248)
27 KOG1462 Translation initiation 100.0 3E-37 6.5E-42 307.8 20.9 348 90-492 7-403 (433)
28 TIGR01105 galF UTP-glucose-1-p 100.0 2.4E-36 5.3E-41 306.3 26.6 243 91-371 2-277 (297)
29 PRK10122 GalU regulator GalF; 100.0 7.1E-36 1.5E-40 303.4 26.5 244 90-371 1-277 (297)
30 cd06425 M1P_guanylylT_B_like_N 100.0 1.1E-35 2.4E-40 291.9 25.9 232 93-371 1-233 (233)
31 cd06428 M1P_guanylylT_A_like_N 100.0 9.2E-36 2E-40 296.9 25.6 235 95-370 1-257 (257)
32 KOG1461 Translation initiation 100.0 1.2E-34 2.7E-39 304.1 31.3 379 91-526 23-423 (673)
33 cd02538 G1P_TT_short G1P_TT_sh 100.0 2.4E-34 5.1E-39 283.8 25.3 231 93-370 1-237 (240)
34 PRK15480 glucose-1-phosphate t 100.0 3.6E-34 7.9E-39 289.7 26.4 235 90-371 1-241 (292)
35 cd02541 UGPase_prokaryotic Pro 100.0 4.6E-34 9.9E-39 286.2 24.6 244 93-371 1-265 (267)
36 TIGR01207 rmlA glucose-1-phosp 100.0 5E-34 1.1E-38 288.3 24.8 231 94-371 1-237 (286)
37 TIGR02623 G1P_cyt_trans glucos 100.0 8.6E-34 1.9E-38 282.4 25.5 234 94-374 1-248 (254)
38 TIGR01099 galU UTP-glucose-1-p 100.0 5.1E-34 1.1E-38 284.6 23.8 240 93-366 1-260 (260)
39 PRK13389 UTP--glucose-1-phosph 100.0 3.1E-33 6.8E-38 284.5 26.1 245 90-371 6-280 (302)
40 cd04189 G1P_TT_long G1P_TT_lon 100.0 1.2E-32 2.7E-37 270.4 26.2 232 93-372 1-235 (236)
41 cd06422 NTP_transferase_like_1 100.0 4E-33 8.6E-38 271.5 22.4 219 94-366 1-221 (221)
42 cd02524 G1P_cytidylyltransfera 100.0 2.3E-32 5E-37 271.9 25.2 243 95-373 1-248 (253)
43 cd06915 NTP_transferase_WcbM_l 100.0 2.8E-32 6E-37 264.6 24.3 223 95-367 1-223 (223)
44 cd04181 NTP_transferase NTP_tr 100.0 1.1E-31 2.5E-36 259.3 24.2 217 95-358 1-217 (217)
45 cd06426 NTP_transferase_like_2 100.0 6.3E-31 1.4E-35 255.4 24.6 219 95-367 1-220 (220)
46 COG1210 GalU UDP-glucose pyrop 100.0 3E-31 6.6E-36 256.2 18.2 250 90-374 2-273 (291)
47 cd04197 eIF-2B_epsilon_N The N 100.0 2.3E-29 5E-34 244.7 18.1 207 93-317 1-217 (217)
48 cd02523 PC_cytidylyltransferas 100.0 1.1E-28 2.4E-33 241.5 22.0 222 95-367 1-229 (229)
49 cd02508 ADP_Glucose_PP ADP-glu 100.0 2.2E-28 4.8E-33 234.7 21.1 199 95-357 1-200 (200)
50 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 3.5E-28 7.5E-33 238.2 22.5 222 95-363 1-230 (231)
51 cd02509 GDP-M1P_Guanylyltransf 99.9 1.8E-26 4E-31 232.1 18.6 235 93-363 1-274 (274)
52 cd02540 GT2_GlmU_N_bac N-termi 99.9 3.7E-25 8E-30 216.0 22.5 221 95-363 1-229 (229)
53 cd02507 eIF-2B_gamma_N_like Th 99.9 1.5E-25 3.3E-30 217.8 17.0 204 93-317 1-216 (216)
54 TIGR01479 GMP_PMI mannose-1-ph 99.9 9.8E-24 2.1E-28 227.1 21.6 240 93-367 1-281 (468)
55 cd04198 eIF-2B_gamma_N The N-t 99.9 4.9E-24 1.1E-28 206.9 15.6 201 93-317 1-214 (214)
56 PRK05450 3-deoxy-manno-octulos 99.9 6.3E-23 1.4E-27 202.8 23.7 234 92-370 2-244 (245)
57 COG1213 Predicted sugar nucleo 99.9 4E-23 8.8E-28 196.7 16.0 227 90-372 1-230 (239)
58 cd02517 CMP-KDO-Synthetase CMP 99.9 6.6E-22 1.4E-26 194.8 23.6 225 93-368 2-238 (239)
59 PRK13368 3-deoxy-manno-octulos 99.9 5E-21 1.1E-25 188.4 21.4 225 92-369 2-237 (238)
60 COG4750 LicC CTP:phosphocholin 99.9 2.1E-21 4.5E-26 177.7 13.7 219 93-371 1-226 (231)
61 PRK15460 cpsB mannose-1-phosph 99.8 3.6E-20 7.9E-25 198.1 19.3 244 90-367 3-290 (478)
62 COG0836 {ManC} Mannose-1-phosp 99.8 5.8E-19 1.3E-23 174.9 20.2 245 92-370 1-285 (333)
63 PLN02917 CMP-KDO synthetase 99.8 2.8E-17 6E-22 166.8 22.7 236 90-372 45-289 (293)
64 TIGR00453 ispD 2-C-methyl-D-er 99.7 4E-15 8.6E-20 144.4 18.4 210 95-369 2-216 (217)
65 TIGR00466 kdsB 3-deoxy-D-manno 99.7 1.6E-14 3.4E-19 142.6 21.5 228 95-363 2-237 (238)
66 PRK00155 ispD 2-C-methyl-D-ery 99.6 7E-15 1.5E-19 143.8 18.7 218 91-372 2-224 (227)
67 cd02516 CDP-ME_synthetase CDP- 99.6 1.8E-14 3.9E-19 139.7 17.7 213 94-366 2-218 (218)
68 TIGR03310 matur_ygfJ molybdenu 99.6 3.1E-14 6.8E-19 134.6 17.3 120 95-244 2-123 (188)
69 PRK09382 ispDF bifunctional 2- 99.6 5.5E-14 1.2E-18 147.1 19.9 208 90-372 3-214 (378)
70 PF12804 NTP_transf_3: MobA-li 99.6 1.9E-14 4E-19 132.7 13.4 120 95-247 1-122 (160)
71 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.6 8.5E-15 1.8E-19 143.4 9.9 38 330-374 29-66 (231)
72 PRK13385 2-C-methyl-D-erythrit 99.6 1.9E-13 4.2E-18 134.1 18.6 219 92-371 2-224 (230)
73 cd02513 CMP-NeuAc_Synthase CMP 99.5 2.8E-13 6E-18 131.6 18.9 216 93-369 2-222 (223)
74 TIGR00454 conserved hypothetic 99.5 8.3E-14 1.8E-18 131.9 13.5 124 93-248 1-126 (183)
75 cd02503 MobA MobA catalyzes th 99.5 5.5E-13 1.2E-17 125.6 15.7 114 93-244 1-116 (181)
76 PRK00317 mobA molybdopterin-gu 99.5 1.7E-12 3.6E-17 123.8 17.7 116 90-240 1-118 (193)
77 PLN02728 2-C-methyl-D-erythrit 99.5 3E-12 6.6E-17 127.1 20.0 220 89-372 21-246 (252)
78 COG1043 LpxA Acyl-[acyl carrie 99.5 2.3E-13 5.1E-18 129.5 11.3 86 430-526 84-175 (260)
79 cd04182 GT_2_like_f GT_2_like_ 99.5 6.7E-13 1.5E-17 124.8 13.1 120 93-242 1-122 (186)
80 cd04651 LbH_G1P_AT_C Glucose-1 99.5 9.5E-13 2.1E-17 113.1 12.4 103 395-520 1-104 (104)
81 COG2068 Uncharacterized MobA-r 99.4 3.9E-12 8.4E-17 119.5 17.3 191 90-371 3-198 (199)
82 COG1044 LpxD UDP-3-O-[3-hydrox 99.4 1.4E-12 3.1E-17 130.9 14.6 145 377-525 105-286 (338)
83 PRK12461 UDP-N-acetylglucosami 99.4 1.2E-12 2.5E-17 130.3 14.0 63 464-526 102-170 (255)
84 COG2266 GTP:adenosylcobinamide 99.4 4E-12 8.8E-17 116.3 15.9 110 93-237 1-112 (177)
85 PRK05289 UDP-N-acetylglucosami 99.4 1.2E-12 2.7E-17 130.9 13.1 63 464-526 106-174 (262)
86 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 2.5E-12 5.4E-17 133.7 15.0 63 464-526 226-294 (343)
87 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.4 9.8E-13 2.1E-17 131.1 11.3 63 464-526 103-171 (254)
88 TIGR03584 PseF pseudaminic aci 99.4 1.7E-11 3.7E-16 119.7 19.7 215 95-370 2-220 (222)
89 TIGR02665 molyb_mobA molybdopt 99.4 7.6E-12 1.6E-16 118.3 16.3 118 93-243 1-120 (186)
90 cd05636 LbH_G1P_TT_C_like Puta 99.4 3.2E-12 6.9E-17 118.8 13.4 127 381-526 9-162 (163)
91 TIGR03202 pucB xanthine dehydr 99.4 1.1E-11 2.4E-16 117.9 17.4 123 94-241 2-126 (190)
92 PRK02726 molybdopterin-guanine 99.4 1E-11 2.2E-16 119.4 17.3 113 90-237 5-119 (200)
93 cd03353 LbH_GlmU_C N-acetyl-gl 99.4 3.6E-12 7.8E-17 121.7 13.6 145 379-526 23-177 (193)
94 TIGR01853 lipid_A_lpxD UDP-3-O 99.4 2.9E-12 6.3E-17 131.8 13.8 63 464-526 218-286 (324)
95 TIGR01852 lipid_A_lpxA acyl-[a 99.4 2.1E-12 4.6E-17 128.7 10.8 89 421-526 76-170 (254)
96 PRK00560 molybdopterin-guanine 99.4 1.8E-11 3.8E-16 117.3 16.2 104 90-232 6-112 (196)
97 PRK14489 putative bifunctional 99.3 3.9E-11 8.4E-16 125.8 17.7 121 90-243 3-125 (366)
98 PF01128 IspD: 2-C-methyl-D-er 99.3 2E-10 4.4E-15 111.6 19.5 216 93-370 1-219 (221)
99 COG1212 KdsB CMP-2-keto-3-deox 99.3 2.2E-10 4.7E-15 108.6 18.6 235 91-372 2-244 (247)
100 COG1211 IspD 4-diphosphocytidy 99.3 5.3E-10 1.1E-14 108.5 20.5 223 90-372 2-228 (230)
101 PRK14490 putative bifunctional 99.3 2.1E-10 4.5E-15 120.5 18.4 111 89-235 171-283 (369)
102 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.2 7E-11 1.5E-15 117.8 12.4 55 379-437 7-63 (254)
103 cd02518 GT2_SpsF SpsF is a gly 99.2 4.8E-10 1E-14 110.1 17.4 115 95-244 2-121 (233)
104 COG0746 MobA Molybdopterin-gua 99.2 4.4E-10 9.5E-15 107.1 15.5 113 90-240 2-116 (192)
105 cd03352 LbH_LpxD UDP-3-O-acyl- 99.2 2.4E-10 5.1E-15 110.1 13.7 144 379-526 9-183 (205)
106 COG1044 LpxD UDP-3-O-[3-hydrox 99.2 1E-10 2.2E-15 117.7 11.2 149 357-526 78-251 (338)
107 cd03353 LbH_GlmU_C N-acetyl-gl 99.2 1.5E-10 3.3E-15 110.4 11.6 89 380-491 12-102 (193)
108 TIGR01852 lipid_A_lpxA acyl-[a 99.1 2.4E-10 5.2E-15 113.9 11.7 125 379-525 6-151 (254)
109 PRK14500 putative bifunctional 99.1 1E-09 2.2E-14 113.7 16.3 109 92-236 160-270 (346)
110 PRK05289 UDP-N-acetylglucosami 99.1 3.5E-10 7.7E-15 113.2 12.0 129 380-526 5-156 (262)
111 PLN02296 carbonate dehydratase 99.1 4.3E-10 9.3E-15 112.4 12.4 111 386-525 55-180 (269)
112 cd04745 LbH_paaY_like paaY-lik 99.1 9.9E-10 2.1E-14 101.2 13.9 95 405-525 18-122 (155)
113 cd05636 LbH_G1P_TT_C_like Puta 99.1 4.9E-10 1.1E-14 104.1 11.6 98 406-526 24-144 (163)
114 cd04646 LbH_Dynactin_6 Dynacti 99.1 1E-09 2.2E-14 102.2 13.0 96 405-525 17-127 (164)
115 TIGR02287 PaaY phenylacetic ac 99.1 8.3E-10 1.8E-14 105.2 12.6 96 405-525 26-130 (192)
116 PRK14353 glmU bifunctional N-a 99.1 4.6E-10 1E-14 120.8 12.0 67 406-490 287-354 (446)
117 PRK12461 UDP-N-acetylglucosami 99.1 5.3E-10 1.2E-14 111.3 11.5 126 379-526 7-152 (255)
118 COG1207 GlmU N-acetylglucosami 99.1 3.1E-10 6.7E-15 116.7 9.5 125 379-525 257-386 (460)
119 PRK11830 dapD 2,3,4,5-tetrahyd 99.1 7.4E-10 1.6E-14 110.3 10.9 112 381-502 101-216 (272)
120 cd04652 LbH_eIF2B_gamma_C eIF- 99.1 1.2E-09 2.5E-14 89.4 10.2 64 408-490 2-66 (81)
121 cd04652 LbH_eIF2B_gamma_C eIF- 99.1 9.8E-10 2.1E-14 89.8 9.7 77 392-487 2-80 (81)
122 PRK13627 carnitine operon prot 99.1 1E-09 2.2E-14 105.0 11.2 95 405-524 28-131 (196)
123 PLN02472 uncharacterized prote 99.1 1.2E-09 2.6E-14 107.8 12.0 111 386-525 62-187 (246)
124 TIGR01853 lipid_A_lpxD UDP-3-O 99.1 1E-09 2.3E-14 113.0 11.7 153 353-526 66-244 (324)
125 TIGR01173 glmU UDP-N-acetylglu 99.0 8.2E-10 1.8E-14 118.9 10.9 118 388-525 260-404 (451)
126 PRK14358 glmU bifunctional N-a 99.0 1.3E-09 2.7E-14 118.6 12.3 154 354-526 219-414 (481)
127 TIGR00965 dapD 2,3,4,5-tetrahy 99.0 1.7E-09 3.6E-14 106.9 11.9 83 406-502 130-213 (269)
128 PRK14356 glmU bifunctional N-a 99.0 8.7E-10 1.9E-14 119.0 10.8 118 388-525 268-412 (456)
129 cd03356 LbH_G1P_AT_C_like Left 99.0 2.2E-09 4.7E-14 87.1 10.1 65 408-491 2-67 (79)
130 cd00710 LbH_gamma_CA Gamma car 99.0 2.5E-09 5.5E-14 99.8 11.6 79 422-525 43-130 (167)
131 cd03360 LbH_AT_putative Putati 99.0 1.2E-09 2.6E-14 103.0 9.0 50 464-513 133-183 (197)
132 PRK00892 lpxD UDP-3-O-[3-hydro 99.0 2.8E-09 6E-14 111.0 12.1 169 357-525 77-275 (343)
133 cd04645 LbH_gamma_CA_like Gamm 99.0 1.1E-08 2.3E-13 94.1 14.4 95 405-524 17-120 (153)
134 cd04650 LbH_FBP Ferripyochelin 99.0 1E-08 2.2E-13 94.4 14.2 81 406-510 19-108 (154)
135 TIGR00965 dapD 2,3,4,5-tetrahy 99.0 3.1E-09 6.6E-14 105.1 11.2 101 389-511 100-210 (269)
136 PRK14357 glmU bifunctional N-a 99.0 2E-09 4.3E-14 116.0 10.5 119 387-525 253-397 (448)
137 COG0663 PaaY Carbonic anhydras 99.0 5E-09 1.1E-13 96.7 11.2 95 405-524 29-132 (176)
138 PRK14352 glmU bifunctional N-a 99.0 2.1E-09 4.6E-14 116.9 10.4 110 402-522 319-434 (482)
139 cd04193 UDPGlcNAc_PPase UDPGlc 99.0 4.3E-08 9.3E-13 100.8 19.2 217 91-323 14-257 (323)
140 cd04180 UGPase_euk_like Eukary 99.0 6.5E-08 1.4E-12 97.0 20.0 213 94-322 2-241 (266)
141 cd04745 LbH_paaY_like paaY-lik 99.0 6E-09 1.3E-13 96.0 11.5 64 380-444 9-78 (155)
142 PRK14355 glmU bifunctional N-a 98.9 4.2E-09 9.1E-14 113.9 11.4 70 406-498 275-344 (459)
143 KOG1461 Translation initiation 98.9 1.6E-09 3.4E-14 115.7 7.5 94 383-495 327-423 (673)
144 PRK09451 glmU bifunctional N-a 98.9 3.3E-09 7.2E-14 114.6 10.0 119 388-526 264-409 (456)
145 cd03352 LbH_LpxD UDP-3-O-acyl- 98.9 9.7E-09 2.1E-13 98.8 11.9 146 380-526 4-165 (205)
146 PRK13627 carnitine operon prot 98.9 7.8E-09 1.7E-13 98.9 10.6 96 407-526 18-121 (196)
147 cd03356 LbH_G1P_AT_C_like Left 98.9 8.7E-09 1.9E-13 83.5 9.4 75 392-485 2-79 (79)
148 cd03350 LbH_THP_succinylT 2,3, 98.9 1.1E-08 2.4E-13 92.5 10.9 115 381-512 5-122 (139)
149 cd03350 LbH_THP_succinylT 2,3, 98.9 1.4E-08 3.1E-13 91.7 11.6 69 421-507 31-108 (139)
150 cd05787 LbH_eIF2B_epsilon eIF- 98.9 7.7E-09 1.7E-13 83.6 8.8 66 408-492 2-68 (79)
151 cd00710 LbH_gamma_CA Gamma car 98.9 1.5E-08 3.2E-13 94.6 11.8 96 378-491 9-116 (167)
152 cd05824 LbH_M1P_guanylylT_C Ma 98.9 1.6E-08 3.4E-13 82.4 10.2 63 406-491 6-68 (80)
153 cd04649 LbH_THP_succinylT_puta 98.9 1.1E-08 2.3E-13 92.1 9.9 27 499-525 74-103 (147)
154 cd04646 LbH_Dynactin_6 Dynacti 98.9 1.5E-08 3.2E-13 94.4 11.3 97 377-492 5-119 (164)
155 PRK14360 glmU bifunctional N-a 98.9 7.2E-09 1.6E-13 111.6 10.5 153 353-526 210-405 (450)
156 PLN02474 UTP--glucose-1-phosph 98.9 9E-07 1.9E-11 94.4 25.9 352 90-481 77-467 (469)
157 PRK14354 glmU bifunctional N-a 98.9 7E-09 1.5E-13 112.0 10.1 105 400-525 277-407 (458)
158 PLN02472 uncharacterized prote 98.9 1.8E-08 4E-13 99.5 12.0 97 406-526 66-176 (246)
159 cd03359 LbH_Dynactin_5 Dynacti 98.9 3E-08 6.5E-13 92.0 12.3 93 406-524 28-132 (161)
160 PLN02296 carbonate dehydratase 98.9 1.4E-08 3E-13 101.6 10.7 86 421-526 70-169 (269)
161 TIGR02287 PaaY phenylacetic ac 98.8 1.8E-08 3.8E-13 96.2 10.7 97 377-492 14-122 (192)
162 cd04651 LbH_G1P_AT_C Glucose-1 98.8 1.6E-08 3.5E-13 86.8 9.5 75 407-507 3-77 (104)
163 PRK11830 dapD 2,3,4,5-tetrahyd 98.8 2.4E-08 5.2E-13 99.6 11.9 101 386-508 100-210 (272)
164 TIGR03308 phn_thr-fam phosphon 98.8 2.3E-08 4.9E-13 96.4 11.3 59 379-438 10-70 (204)
165 TIGR03570 NeuD_NnaD sugar O-ac 98.8 5.2E-08 1.1E-12 92.7 13.6 19 353-371 62-80 (201)
166 TIGR03570 NeuD_NnaD sugar O-ac 98.8 2.2E-08 4.8E-13 95.3 10.9 15 475-489 154-168 (201)
167 COG1083 NeuA CMP-N-acetylneura 98.8 1.3E-07 2.8E-12 89.4 14.8 219 91-372 2-224 (228)
168 COG0663 PaaY Carbonic anhydras 98.8 2.7E-08 5.9E-13 91.9 10.2 97 377-492 17-125 (176)
169 COG1043 LpxA Acyl-[acyl carrie 98.8 1.8E-08 3.8E-13 96.5 8.8 136 380-525 6-156 (260)
170 KOG1462 Translation initiation 98.8 1.5E-08 3.2E-13 102.9 8.1 90 384-492 329-420 (433)
171 TIGR03532 DapD_Ac 2,3,4,5-tetr 98.8 2.7E-08 5.9E-13 97.6 9.8 29 464-492 161-190 (231)
172 cd04650 LbH_FBP Ferripyochelin 98.8 9E-08 2E-12 88.2 12.7 97 376-491 5-113 (154)
173 PTZ00339 UDP-N-acetylglucosami 98.8 4.4E-07 9.5E-12 97.5 19.4 216 91-322 105-351 (482)
174 cd03358 LbH_WxcM_N_like WcxM-l 98.8 4E-08 8.7E-13 85.9 9.4 68 405-492 16-85 (119)
175 PRK14359 glmU bifunctional N-a 98.8 2.5E-08 5.4E-13 106.8 9.8 111 389-514 282-401 (430)
176 cd03360 LbH_AT_putative Putati 98.8 5.4E-08 1.2E-12 91.6 11.0 6 355-360 61-66 (197)
177 cd05787 LbH_eIF2B_epsilon eIF- 98.8 3.6E-08 7.7E-13 79.6 8.2 79 423-522 1-79 (79)
178 cd04645 LbH_gamma_CA_like Gamm 98.8 6.3E-08 1.4E-12 89.0 10.8 15 428-442 61-75 (153)
179 cd05635 LbH_unknown Uncharacte 98.7 6.3E-08 1.4E-12 82.7 9.1 66 406-492 30-97 (101)
180 TIGR03536 DapD_gpp 2,3,4,5-tet 98.7 4.6E-08 1E-12 97.8 8.7 6 353-358 133-138 (341)
181 cd05824 LbH_M1P_guanylylT_C Ma 98.6 2.3E-07 5E-12 75.5 9.3 62 405-485 17-80 (80)
182 cd03358 LbH_WxcM_N_like WcxM-l 98.6 1.8E-07 4E-12 81.7 9.2 74 421-512 16-99 (119)
183 cd04649 LbH_THP_succinylT_puta 98.6 3.8E-07 8.2E-12 82.1 10.8 53 384-437 8-63 (147)
184 PRK11132 cysE serine acetyltra 98.6 2.8E-07 6.1E-12 92.0 10.4 80 406-497 148-228 (273)
185 PLN02694 serine O-acetyltransf 98.6 2.4E-07 5.2E-12 92.7 9.0 79 406-496 167-246 (294)
186 cd03359 LbH_Dynactin_5 Dynacti 98.5 5.9E-07 1.3E-11 83.3 10.6 48 475-524 73-120 (161)
187 PRK05293 glgC glucose-1-phosph 98.5 2.7E-07 5.9E-12 97.3 9.0 92 378-490 283-380 (380)
188 TIGR03535 DapD_actino 2,3,4,5- 98.5 5.7E-07 1.2E-11 89.7 10.2 26 500-525 227-255 (319)
189 PRK10502 putative acyl transfe 98.5 7.9E-07 1.7E-11 84.2 9.7 40 406-445 52-97 (182)
190 PRK09677 putative lipopolysacc 98.5 1.2E-06 2.7E-11 83.6 11.0 91 406-497 66-165 (192)
191 cd05635 LbH_unknown Uncharacte 98.4 1.6E-06 3.5E-11 74.0 10.3 50 421-490 29-78 (101)
192 PRK09527 lacA galactoside O-ac 98.4 1.5E-06 3.2E-11 83.6 10.3 104 386-497 58-166 (203)
193 cd00208 LbetaH Left-handed par 98.4 1.4E-06 3.1E-11 69.5 8.6 70 407-492 2-74 (78)
194 TIGR01172 cysE serine O-acetyl 98.4 9.4E-07 2E-11 82.1 8.5 23 422-444 82-104 (162)
195 TIGR03536 DapD_gpp 2,3,4,5-tet 98.4 2E-06 4.4E-11 86.2 11.2 16 421-436 224-239 (341)
196 PLN02694 serine O-acetyltransf 98.4 1.1E-06 2.5E-11 87.9 9.1 82 386-492 163-248 (294)
197 PRK10502 putative acyl transfe 98.4 2.3E-06 4.9E-11 81.1 10.3 100 387-497 55-159 (182)
198 KOG1460 GDP-mannose pyrophosph 98.4 9E-07 1.9E-11 87.2 7.6 61 379-439 290-358 (407)
199 TIGR01172 cysE serine O-acetyl 98.4 9.7E-07 2.1E-11 82.0 7.5 28 464-491 120-148 (162)
200 PRK02862 glgC glucose-1-phosph 98.4 1.4E-06 2.9E-11 93.6 9.7 96 410-526 297-423 (429)
201 PLN02357 serine acetyltransfer 98.4 2.2E-06 4.8E-11 88.1 10.6 27 464-490 285-312 (360)
202 cd00208 LbetaH Left-handed par 98.4 2.6E-06 5.7E-11 68.0 8.9 51 422-490 1-60 (78)
203 PLN02241 glucose-1-phosphate a 98.3 1.4E-06 3E-11 93.8 9.4 24 392-415 318-341 (436)
204 TIGR01208 rmlA_long glucose-1- 98.3 2.1E-06 4.5E-11 89.7 10.2 34 406-444 255-288 (353)
205 COG1045 CysE Serine acetyltran 98.3 1.6E-06 3.5E-11 81.2 8.1 52 475-526 94-152 (194)
206 PLN02739 serine acetyltransfer 98.3 2.6E-06 5.6E-11 87.0 10.2 32 464-495 258-290 (355)
207 PRK09527 lacA galactoside O-ac 98.3 5.2E-06 1.1E-10 79.8 11.7 69 421-513 75-164 (203)
208 cd03357 LbH_MAT_GAT Maltose O- 98.3 5.7E-06 1.2E-10 77.4 11.7 86 406-497 63-153 (169)
209 PLN02357 serine acetyltransfer 98.3 1.9E-06 4E-11 88.7 9.0 96 407-515 234-330 (360)
210 PRK11132 cysE serine acetyltra 98.3 3.5E-06 7.5E-11 84.3 10.1 29 464-492 200-229 (273)
211 PRK10191 putative acyl transfe 98.3 6.1E-06 1.3E-10 75.2 10.8 32 464-495 93-125 (146)
212 cd03357 LbH_MAT_GAT Maltose O- 98.3 3.7E-06 7.9E-11 78.6 9.6 75 421-513 62-151 (169)
213 COG2171 DapD Tetrahydrodipicol 98.3 4.4E-06 9.6E-11 81.7 10.1 103 383-499 114-219 (271)
214 TIGR02091 glgC glucose-1-phosp 98.3 3E-06 6.4E-11 88.8 9.5 65 378-443 284-349 (361)
215 PRK00725 glgC glucose-1-phosph 98.3 1.7E-06 3.7E-11 92.7 7.8 71 417-508 323-393 (425)
216 TIGR02092 glgD glucose-1-phosp 98.3 2.6E-06 5.5E-11 89.6 8.7 63 380-444 281-344 (369)
217 cd03354 LbH_SAT Serine acetylt 98.3 4.1E-06 8.9E-11 71.3 8.4 19 472-490 52-70 (101)
218 PRK00844 glgC glucose-1-phosph 98.2 3.6E-06 7.9E-11 89.7 9.5 57 388-444 314-371 (407)
219 PRK09677 putative lipopolysacc 98.2 7E-06 1.5E-10 78.4 10.2 50 406-473 50-101 (192)
220 PRK10092 maltose O-acetyltrans 98.2 7E-06 1.5E-10 77.8 9.9 87 405-497 73-164 (183)
221 PRK13412 fkp bifunctional fuco 98.2 7.3E-05 1.6E-09 86.2 19.6 215 215-477 154-392 (974)
222 PRK10191 putative acyl transfe 98.2 4.3E-06 9.3E-11 76.2 7.8 29 464-492 99-128 (146)
223 PF07959 Fucokinase: L-fucokin 98.2 7.5E-06 1.6E-10 87.2 10.8 97 214-323 54-159 (414)
224 PLN02739 serine acetyltransfer 98.2 3.2E-06 6.8E-11 86.4 7.5 54 421-492 231-293 (355)
225 COG1045 CysE Serine acetyltran 98.2 6.8E-06 1.5E-10 77.0 9.0 79 408-492 76-155 (194)
226 COG2171 DapD Tetrahydrodipicol 98.2 2.5E-06 5.5E-11 83.4 5.8 100 390-511 109-219 (271)
227 PRK00576 molybdopterin-guanine 98.2 4.2E-05 9.1E-10 71.9 14.0 97 113-239 3-103 (178)
228 cd00897 UGPase_euk Eukaryotic 98.2 0.00016 3.6E-09 73.4 18.9 214 92-323 3-234 (300)
229 COG0448 GlgC ADP-glucose pyrop 98.2 6.6E-06 1.4E-10 85.0 8.8 70 417-508 292-361 (393)
230 PF02348 CTP_transf_3: Cytidyl 98.1 0.00044 9.5E-09 66.8 21.1 176 94-315 1-185 (217)
231 PLN02830 UDP-sugar pyrophospho 98.1 0.00065 1.4E-08 75.3 24.7 222 91-323 127-384 (615)
232 cd05825 LbH_wcaF_like wcaF-lik 98.1 1.1E-05 2.3E-10 69.6 8.6 81 406-497 10-91 (107)
233 COG1208 GCD1 Nucleoside-diphos 98.1 7.7E-06 1.7E-10 85.7 9.2 87 384-495 256-345 (358)
234 PF01704 UDPGP: UTP--glucose-1 98.1 0.00015 3.3E-09 77.1 18.6 217 90-323 54-289 (420)
235 cd04647 LbH_MAT_like Maltose O 98.1 1.4E-05 3E-10 68.5 8.8 33 407-439 3-39 (109)
236 cd05825 LbH_wcaF_like wcaF-lik 98.1 3.1E-05 6.8E-10 66.6 11.0 16 475-490 57-72 (107)
237 TIGR03535 DapD_actino 2,3,4,5- 98.1 4.6E-05 1E-09 76.2 12.2 13 461-473 223-235 (319)
238 cd03354 LbH_SAT Serine acetylt 98.0 3.6E-05 7.7E-10 65.4 9.8 27 464-490 61-88 (101)
239 cd04647 LbH_MAT_like Maltose O 98.0 4.6E-05 1E-09 65.2 10.3 29 464-492 59-88 (109)
240 PRK10092 maltose O-acetyltrans 98.0 2.3E-05 5E-10 74.2 8.9 33 481-513 130-162 (183)
241 PLN02435 probable UDP-N-acetyl 98.0 0.00029 6.4E-09 75.9 17.6 216 91-322 115-364 (493)
242 COG1861 SpsF Spore coat polysa 98.0 0.00069 1.5E-08 64.8 17.8 116 93-244 4-125 (241)
243 cd06424 UGGPase UGGPase cataly 98.0 0.00023 5E-09 72.7 15.8 219 94-323 2-253 (315)
244 cd03349 LbH_XAT Xenobiotic acy 97.8 0.0001 2.3E-09 67.1 8.9 75 421-497 21-108 (145)
245 KOG3121 Dynactin, subunit p25 97.8 3.2E-05 6.9E-10 68.3 5.2 86 406-510 40-137 (184)
246 COG4284 UDP-glucose pyrophosph 97.7 0.00081 1.7E-08 71.2 15.1 183 90-278 103-305 (472)
247 KOG4750 Serine O-acetyltransfe 97.7 8.3E-05 1.8E-09 70.8 6.5 75 406-492 155-230 (269)
248 COG0110 WbbJ Acetyltransferase 97.6 0.00027 5.8E-09 66.9 9.0 102 405-513 67-174 (190)
249 KOG2638 UDP-glucose pyrophosph 97.6 0.0087 1.9E-07 62.1 19.8 350 91-485 102-497 (498)
250 TIGR02353 NRPS_term_dom non-ri 97.5 0.00038 8.2E-09 79.1 10.4 99 405-516 112-215 (695)
251 TIGR02353 NRPS_term_dom non-ri 97.5 0.00036 7.8E-09 79.2 9.1 76 405-493 597-676 (695)
252 KOG1322 GDP-mannose pyrophosph 97.3 0.00033 7.2E-09 70.5 5.5 77 420-509 275-351 (371)
253 COG0110 WbbJ Acetyltransferase 97.3 0.00081 1.8E-08 63.6 7.4 16 421-436 67-82 (190)
254 cd03349 LbH_XAT Xenobiotic acy 97.2 0.003 6.5E-08 57.5 10.5 27 464-490 80-107 (145)
255 KOG4042 Dynactin subunit p27/W 97.0 0.0013 2.9E-08 58.8 6.0 111 389-507 8-140 (190)
256 KOG4042 Dynactin subunit p27/W 97.0 0.0017 3.8E-08 58.0 6.3 100 406-525 9-127 (190)
257 KOG3121 Dynactin, subunit p25 96.9 0.0028 6E-08 56.3 6.3 51 474-525 84-139 (184)
258 KOG4750 Serine O-acetyltransfe 96.8 0.0019 4.2E-08 61.6 5.5 26 500-525 202-232 (269)
259 COG4801 Predicted acyltransfer 96.7 0.006 1.3E-07 58.6 8.2 78 406-507 23-101 (277)
260 COG4801 Predicted acyltransfer 96.7 0.0042 9.1E-08 59.7 6.9 69 406-492 34-104 (277)
261 PF00132 Hexapep: Bacterial tr 95.8 0.009 2E-07 40.4 2.8 9 407-415 3-11 (36)
262 cd00761 Glyco_tranf_GTA_type G 95.2 0.37 8E-06 41.7 11.9 99 117-237 2-103 (156)
263 TIGR03552 F420_cofC 2-phospho- 94.6 0.17 3.7E-06 47.9 8.7 85 125-237 31-117 (195)
264 PF14602 Hexapep_2: Hexapeptid 94.2 0.058 1.3E-06 36.4 3.2 6 409-414 5-10 (34)
265 KOG2388 UDP-N-acetylglucosamin 93.5 0.36 7.8E-06 51.5 9.0 128 90-223 95-247 (477)
266 PF00535 Glycos_transf_2: Glyc 93.4 1.5 3.1E-05 38.9 12.0 109 117-247 3-114 (169)
267 PF07959 Fucokinase: L-fucokin 88.9 1.7 3.8E-05 46.5 8.8 96 340-442 224-322 (414)
268 cd04186 GT_2_like_c Subfamily 88.5 8.4 0.00018 34.1 11.9 99 117-240 2-103 (166)
269 cd06423 CESA_like CESA_like is 85.3 12 0.00026 32.8 11.1 100 118-238 3-105 (180)
270 cd04179 DPM_DPG-synthase_like 84.3 12 0.00026 34.1 10.8 107 118-246 3-114 (185)
271 cd06434 GT2_HAS Hyaluronan syn 83.9 16 0.00035 34.8 11.9 97 117-237 5-103 (235)
272 cd04188 DPG_synthase DPG_synth 82.2 16 0.00034 34.4 11.0 109 118-247 3-118 (211)
273 cd02525 Succinoglycan_BP_ExoA 81.9 14 0.0003 35.4 10.6 106 117-245 5-115 (249)
274 cd06439 CESA_like_1 CESA_like_ 81.0 27 0.00059 33.7 12.4 99 116-238 33-136 (251)
275 cd06442 DPM1_like DPM1_like re 79.3 29 0.00063 32.7 11.8 108 117-246 2-113 (224)
276 cd06427 CESA_like_2 CESA_like_ 78.8 31 0.00066 33.4 12.0 109 117-246 6-119 (241)
277 cd06438 EpsO_like EpsO protein 78.4 50 0.0011 30.3 12.8 107 117-244 2-113 (183)
278 cd02510 pp-GalNAc-T pp-GalNAc- 77.8 28 0.00062 35.0 11.8 104 118-241 4-113 (299)
279 PLN02726 dolichyl-phosphate be 75.1 41 0.00088 32.6 11.7 49 192-246 79-128 (243)
280 cd04195 GT2_AmsE_like GT2_AmsE 73.5 55 0.0012 30.2 11.7 99 117-238 3-107 (201)
281 cd06433 GT_2_WfgS_like WfgS an 73.1 59 0.0013 29.5 11.8 101 118-243 4-108 (202)
282 COG1920 Predicted nucleotidylt 72.6 53 0.0011 31.4 10.8 105 93-236 1-111 (210)
283 cd04184 GT2_RfbC_Mx_like Myxoc 72.5 47 0.001 30.6 11.1 103 118-242 7-115 (202)
284 cd04192 GT_2_like_e Subfamily 72.2 50 0.0011 31.0 11.3 105 117-241 2-112 (229)
285 PRK14583 hmsR N-glycosyltransf 67.9 53 0.0011 35.4 11.5 101 116-238 79-182 (444)
286 PRK10073 putative glycosyl tra 66.8 67 0.0015 33.1 11.6 105 118-245 12-119 (328)
287 cd04187 DPM1_like_bac Bacteria 66.4 66 0.0014 29.2 10.5 105 118-245 3-113 (181)
288 PRK13412 fkp bifunctional fuco 65.3 9.5 0.00021 45.1 5.3 44 464-507 343-387 (974)
289 cd04185 GT_2_like_b Subfamily 64.7 1E+02 0.0022 28.5 11.5 100 118-237 3-105 (202)
290 PRK11204 N-glycosyltransferase 63.8 72 0.0016 33.8 11.5 98 119-238 61-161 (420)
291 cd06421 CESA_CelA_like CESA_Ce 63.1 1.3E+02 0.0028 28.3 12.2 100 117-238 6-111 (234)
292 KOG2978 Dolichol-phosphate man 62.0 1.5E+02 0.0033 28.3 12.9 102 125-249 19-126 (238)
293 cd02522 GT_2_like_a GT_2_like_ 61.6 1.3E+02 0.0028 28.0 11.9 95 117-240 4-101 (221)
294 cd02520 Glucosylceramide_synth 61.6 1.1E+02 0.0025 28.2 11.3 100 117-236 6-111 (196)
295 PF13641 Glyco_tranf_2_3: Glyc 60.5 24 0.00053 33.4 6.6 106 117-242 6-117 (228)
296 TIGR03111 glyc2_xrt_Gpos1 puta 60.4 1.2E+02 0.0026 32.7 12.4 99 118-238 55-158 (439)
297 cd06435 CESA_NdvC_like NdvC_li 60.3 88 0.0019 29.7 10.5 98 117-237 3-110 (236)
298 TIGR03469 HonB hopene-associat 60.0 1E+02 0.0022 32.5 11.7 113 118-243 46-165 (384)
299 TIGR03472 HpnI hopanoid biosyn 59.2 79 0.0017 33.1 10.7 104 117-240 46-155 (373)
300 cd02511 Beta4Glucosyltransfera 58.4 1.2E+02 0.0027 29.0 11.2 93 117-238 5-97 (229)
301 cd04196 GT_2_like_d Subfamily 57.3 1.3E+02 0.0029 27.6 11.0 98 117-235 3-103 (214)
302 PTZ00260 dolichyl-phosphate be 55.6 1.4E+02 0.003 30.9 11.6 50 192-247 148-201 (333)
303 cd06420 GT2_Chondriotin_Pol_N 54.6 1.3E+02 0.0029 26.9 10.2 99 118-236 3-104 (182)
304 cd02526 GT2_RfbF_like RfbF is 52.6 2.1E+02 0.0045 27.0 15.5 93 118-233 3-97 (237)
305 PRK11498 bcsA cellulose syntha 52.2 1.5E+02 0.0031 35.1 12.0 104 117-247 265-374 (852)
306 PRK10018 putative glycosyl tra 51.0 2.7E+02 0.0059 28.0 12.6 97 118-238 11-112 (279)
307 COG1215 Glycosyltransferases, 48.5 1.1E+02 0.0024 32.3 9.8 106 116-241 58-167 (439)
308 PRK10714 undecaprenyl phosphat 45.3 3.5E+02 0.0075 27.8 12.6 46 192-244 76-122 (325)
309 TIGR01556 rhamnosyltran L-rham 44.8 3.2E+02 0.0068 26.9 18.0 91 125-239 8-101 (281)
310 PF04519 Bactofilin: Polymer-f 43.4 55 0.0012 27.3 5.2 17 427-443 36-52 (101)
311 cd06437 CESA_CaSu_A2 Cellulose 42.6 1.8E+02 0.004 27.5 9.5 96 118-235 7-111 (232)
312 PRK13915 putative glucosyl-3-p 42.3 2.1E+02 0.0046 29.1 10.3 50 192-247 101-153 (306)
313 cd06436 GlcNAc-1-P_transferase 37.2 3.3E+02 0.0072 25.0 12.4 106 117-236 2-114 (191)
314 TIGR03030 CelA cellulose synth 35.9 3.3E+02 0.0073 31.4 11.7 40 193-238 215-255 (713)
315 TIGR02990 ectoine_eutA ectoine 35.7 2.7E+02 0.0059 27.4 9.5 129 91-235 70-203 (239)
316 cd06913 beta3GnTL1_like Beta 1 35.5 3.7E+02 0.0081 25.1 11.3 107 118-240 3-113 (219)
317 PRK10063 putative glycosyl tra 32.5 4.8E+02 0.01 25.5 12.8 97 119-239 8-109 (248)
318 COG1664 CcmA Integral membrane 31.8 2E+02 0.0043 26.2 7.2 23 420-442 49-72 (146)
319 PRK00923 sirohydrochlorin coba 30.8 74 0.0016 27.7 4.2 24 122-146 44-67 (126)
320 COG1216 Predicted glycosyltran 28.0 6.3E+02 0.014 25.4 11.5 104 120-245 12-118 (305)
321 COG1664 CcmA Integral membrane 26.5 4.9E+02 0.011 23.6 10.6 27 464-490 91-117 (146)
322 PF04519 Bactofilin: Polymer-f 22.2 4.5E+02 0.0098 21.7 9.5 20 464-483 37-56 (101)
323 PF01983 CofC: Guanylyl transf 21.3 1.8E+02 0.0039 28.3 5.2 80 125-236 32-113 (217)
No 1
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2e-71 Score=542.57 Aligned_cols=361 Identities=43% Similarity=0.721 Sum_probs=329.9
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
+.|+||||.||+||||+|||..+||||+|++++ |||+++|++|.++||++|++.++|+++++++|+.+.|.. +|+
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~----~lg 82 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGK----ELG 82 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhh----ccc
Confidence 789999999999999999999999999999977 999999999999999999999999999999999999833 344
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
|+++...|++ +.|++|++++.|+.+|..++ .+|+||+||++|+++|++|+++|+++++++|+++.++
T Consensus 83 ---Vei~~s~ete----plgtaGpl~laR~~L~~~~~------~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~v 149 (371)
T KOG1322|consen 83 ---VEILASTETE----PLGTAGPLALARDFLWVFED------APFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKV 149 (371)
T ss_pred ---eEEEEEeccC----CCcccchHHHHHHHhhhcCC------CcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEec
Confidence 8999988875 78999999999999998874 4899999999999999999999999999999999999
Q ss_pred cCCcCCCceEEEEcC-CCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCC
Q 043870 251 DESRASDFGLMKIDE-TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN 329 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~-~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~ 329 (526)
++ +++||++++|+ +|+|.+|.|||+.. .++..++|+|+|++++|++++ .+|.
T Consensus 150 de--pSkyGvv~~d~~~grV~~F~EKPkd~---------------------vsnkinaGiYi~~~~vL~ri~--~~pt-- 202 (371)
T KOG1322|consen 150 DE--PSKYGVVVIDEDTGRVIRFVEKPKDL---------------------VSNKINAGIYILNPEVLDRIL--LRPT-- 202 (371)
T ss_pred cC--ccccceEEEecCCCceeEehhCchhh---------------------hhccccceEEEECHHHHhHhh--hccc--
Confidence 87 88999999998 89999999999943 345567999999999998876 3454
Q ss_pred ChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCCeeecCeeEeeeE--
Q 043870 330 DFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSI-- 407 (526)
Q Consensus 330 d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~-- 407 (526)
+|++|++|.+++++++++|.++|||+|||+|+||+.+ +.||+.+.+.++++++.||+++.++++.|++
T Consensus 203 SiekEifP~~a~~~~l~a~~l~gfWmDIGqpkdf~~g----------~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~ 272 (371)
T KOG1322|consen 203 SIEKEIFPAMAEEHQLYAFDLPGFWMDIGQPKDFLTG----------FSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIAS 272 (371)
T ss_pred chhhhhhhhhhhcCceEEEecCchhhhcCCHHHHHHH----------HHHHHhhCcccCCccccCCccccccEeeccccc
Confidence 4899999999999999999999999999999999999 5678888999999999999999999999955
Q ss_pred ECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCc
Q 043870 408 ISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNV 487 (526)
Q Consensus 408 Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~ 487 (526)
+|++|.|++ +|+||++|+|++|++|.+|++|++++|+++++++++++++++|+++|. +|+++|+||++|
T Consensus 273 iG~~C~Ig~----~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~-------~id~~a~lG~nV 341 (371)
T KOG1322|consen 273 IGENCSIGP----NVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWA-------RIDKNAVLGKNV 341 (371)
T ss_pred cCCccEECC----CceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCce-------EEecccEeccce
Confidence 456666665 799999999999999999999999999999999999999998877775 899999999999
Q ss_pred EEccCCCcCCccccCCCeEEccCcEEECCCCEEC
Q 043870 488 IIANKDGVEEAERPSDGFYIRSGITVVLKNTTIK 521 (526)
Q Consensus 488 ~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~ 521 (526)
+|.|.+.+.+. ++.++++++++|.++++|.
T Consensus 342 ~V~d~~~vn~g----~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 342 IVADEDYVNEG----SGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred EEecccccccc----eeEEeccceeecccccccC
Confidence 99999888876 7899999999999999873
No 2
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-71 Score=559.63 Aligned_cols=386 Identities=42% Similarity=0.732 Sum_probs=353.0
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
.+.+-|+|||||.|+||.|||..++||.+|++|+|+|||++|++|.++||++|.|+++|...+|.+||.+.|+|+.+.
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~-- 80 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDR-- 80 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCcccccc--
Confidence 456899999999999999999999999999999999999999999999999999999999999999999998886543
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
..+++.++.+.+. +.++.|++||++|+++.++.+++ ...+.++|++||++|++||.++++.|.+++|++|++|.+
T Consensus 81 ~~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~ 155 (393)
T COG0448 81 KNGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKE 155 (393)
T ss_pred ccCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEE
Confidence 2456899988776 35678999999999999999986 577999999999999999999999999999999999999
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC---
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP--- 326 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~--- 326 (526)
++..+++.||++.+|++++|++|.|||..... ...+++||+|+|++++|.++|++...
T Consensus 156 Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~ 216 (393)
T COG0448 156 VPREEASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPN 216 (393)
T ss_pred CChHhhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999997210 22389999999999999999987643
Q ss_pred CCCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCCeee-cCeeEee
Q 043870 327 EANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQD 405 (526)
Q Consensus 327 ~~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~ 405 (526)
...||+.++||.+++.+++++|+|+|||.||||+++|++||++|++..+.+.+|++++||++.....||+++ ++..+.+
T Consensus 217 ~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~n 296 (393)
T COG0448 217 SSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSN 296 (393)
T ss_pred ccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEee
Confidence 357999999999999999999999999999999999999999999977778899999999999999999999 6777899
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGK 485 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~ 485 (526)
|.|+.||+|.. +|+||+|+.+++|+++|.|++|++|++ +.||+||.|++|||++||+|++
T Consensus 297 SLv~~GciI~G-~V~nSVL~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~ 356 (393)
T COG0448 297 SLVAGGCIISG-TVENSVLFRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGE 356 (393)
T ss_pred eeeeCCeEEEe-EEEeeEEecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCC
Confidence 99999999976 999999999999999999999999999 8999999999999999999999
Q ss_pred CcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 486 NVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 486 ~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
|++|++.. ++.++.. +.+. ++++||++++.++.+..
T Consensus 357 g~~i~~~~--~~~d~~~-~~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 357 GVVIGGDK--PEEDRKR-FRSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred CcEEcCCc--chhcccc-cccc-CCcEEEecccEeccccc
Confidence 99999875 5666666 6666 99999999999988764
No 3
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1.4e-65 Score=548.22 Aligned_cols=435 Identities=76% Similarity=1.289 Sum_probs=384.1
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
|++|+|||||||+|+||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|.++.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 45799999999999999999999999999999988999999999999999999999999999999999877755544444
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
...++.++...|.. ..+.|+.||+++++++++++++...+..++|++++||++++.|+.++++.|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 44446666655542 2345789999999999988764211125899999999999999999999999999999999988
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCC
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN 329 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~ 329 (526)
++.+++.+||++.+|++++|.+|.|||..+....+++++++|++++.+.+..++++++|+|+|++++|..++++..+...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 87666789999999999999999999987666778999999998886655567899999999999999878777655555
Q ss_pred ChhhchHhhhhcC-CcEEEEEecceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCCeeecCeeEeeeEE
Q 043870 330 DFGSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSII 408 (526)
Q Consensus 330 d~~~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~I 408 (526)
+|..++++.++.+ .++++|.+++||.|||++++|++||+.++...+...++++..++++.....||+.+.++++.+|.|
T Consensus 239 ~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~I 318 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSII 318 (436)
T ss_pred chhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeEE
Confidence 7888999999876 789999999999999999999999999998776666778888899988888999999999999999
Q ss_pred CCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcE
Q 043870 409 SHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVI 488 (526)
Q Consensus 409 g~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~ 488 (526)
+++|.|+.+.|++|+||++|+|++||+|.++++||.++|+++........+|.+++.||++|+|++++|++++.||++++
T Consensus 319 ~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~ 398 (436)
T PLN02241 319 SHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVV 398 (436)
T ss_pred cCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcE
Confidence 99999997788999999999999999999999999888888776766666777778999999999999999999999999
Q ss_pred EccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 489 IANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 489 i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
|.+++++.+..++|++++|++|+++||++|.|.+||+|
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 399 IINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred EecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 99999999999999999999998899999999999986
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=4e-62 Score=520.41 Aligned_cols=427 Identities=60% Similarity=1.061 Sum_probs=371.5
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
.++.|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|.+. .+.
T Consensus 2 ~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~~ 78 (429)
T PRK02862 2 KRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GFS 78 (429)
T ss_pred CcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---ccC
Confidence 36899999999999999999999999999999989999999999999999999999999999999998655321 111
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
.+.+.++...|.. ....|+.||++|++++++++++ ...++|+|++||++++.|+.++++.|.+.++++|+++.+.
T Consensus 79 ~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~ 153 (429)
T PRK02862 79 GGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPV 153 (429)
T ss_pred CCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEec
Confidence 2334454443321 2234568999999999998863 2247899999999999999999999999999999999877
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCC
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAND 330 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d 330 (526)
+..++..||++.+|++++|..|.|||.....+.+.++.++|..++.+.....+++++|+|+|++++|..+++.. +...+
T Consensus 154 ~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~~ 232 (429)
T PRK02862 154 DEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYTD 232 (429)
T ss_pred ChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChhh
Confidence 65557789999999899999999999866566778888888877766666678999999999999998777653 23456
Q ss_pred hhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhc-CCCCCcccCCCCCcccCCCCCCCCeeecCeeEeeeEEC
Q 043870 331 FGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT-DKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIIS 409 (526)
Q Consensus 331 ~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll-~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig 409 (526)
+..++++.++++.++++|.+++||.|+||+++|++||+.++ ...+....+.+..++++.+.+.||+.+.++++.++.||
T Consensus 233 ~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ig 312 (429)
T PRK02862 233 FGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESIIA 312 (429)
T ss_pred hHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCEEC
Confidence 77899999999999999999999999999999999999998 55555567778889999999999999988999999999
Q ss_pred CCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEE
Q 043870 410 HGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVII 489 (526)
Q Consensus 410 ~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i 489 (526)
++|.|..+.|.+|+||++|+|+++|+|.+|+++|.++|..+..-..++..|..++.||+||.|++|+|+++|+||++|++
T Consensus 313 ~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 313 EGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRI 392 (429)
T ss_pred CCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEE
Confidence 99999778899999999999999999999999999888877766677778888899999999999999999999999999
Q ss_pred ccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 490 ANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 490 ~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
.|++.+.+.++..+|++|+.|+++|++++++++||+|
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 393 VNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred ecCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 9999999999999999999999999999999999976
No 5
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=8.4e-55 Score=457.85 Aligned_cols=374 Identities=39% Similarity=0.621 Sum_probs=313.8
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+...|+.....
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~ 80 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRIN 80 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCCC
Confidence 45799999999999999999999999999999998899999999999999999999999999999999643323211111
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
..+.++..++. +..++|+.||++||+++++++.+ ...++|+|++||++++.++.++++.|.+.++++|+++..
T Consensus 81 --~~~~i~~~~~~--~~~~~~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~ 153 (380)
T PRK05293 81 --GGVTILPPYSE--SEGGKWYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIE 153 (380)
T ss_pred --CCEEEeCCccc--CCCCcccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEE
Confidence 12445422222 12346789999999999999863 223789999999999999999999999988998988877
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC---
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP--- 326 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~--- 326 (526)
.+..++..||++..|++++|.+|.|||..+ .++++++|+|+|++++|..+++....
T Consensus 154 ~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~---------------------~~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 212 (380)
T PRK05293 154 VPWEEASRFGIMNTDENMRIVEFEEKPKNP---------------------KSNLASMGIYIFNWKRLKEYLIEDEKNPN 212 (380)
T ss_pred cchhhccccCEEEECCCCcEEEEEeCCCCC---------------------CcceeeeEEEEEcHHHHHHHHHHHhhcCC
Confidence 655557789999999889999999998643 35689999999999999777765322
Q ss_pred CCCChhhchHhhhhcC-CcEEEEEecceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCCeee-cCeeEe
Q 043870 327 EANDFGSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQ 404 (526)
Q Consensus 327 ~~~d~~~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~ 404 (526)
...+|..++++.++++ .++++|.++++|.|+||+++|.+||+.++...+...++++...+++...+.+|++| .++.|.
T Consensus 213 ~~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 292 (380)
T PRK05293 213 SSHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK 292 (380)
T ss_pred chhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEe
Confidence 2345667999998874 68999999999999999999999999998877767778888888888889999999 688898
Q ss_pred eeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEEC
Q 043870 405 DSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIG 484 (526)
Q Consensus 405 ~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig 484 (526)
++.||++|.|+ +.+.+|+||++|+|+++|+|.+++++.+ +.||++|.|.+|+|+++|+||
T Consensus 293 ~~~Ig~~~~I~-~~v~~s~ig~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~ 352 (380)
T PRK05293 293 NSLVVEGCVVY-GTVEHSVLFQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIG 352 (380)
T ss_pred cCEECCCCEEc-ceecceEEcCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEEC
Confidence 99999999996 4688999999999999999999999888 899999999999999999999
Q ss_pred CCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 485 KNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 485 ~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
+++++.+... +..+||++++|+++++|
T Consensus 353 ~~~~i~~~~~---------------~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 353 DGVIIGGGKE---------------VITVIGENEVIGVGTVI 379 (380)
T ss_pred CCCEEcCCCc---------------eeEEEeCCCCCCCCcEe
Confidence 9999987631 13567888888888875
No 6
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.3e-54 Score=460.13 Aligned_cols=384 Identities=38% Similarity=0.694 Sum_probs=313.8
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+.+|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|+.+++.+|+.+.|++. +.
T Consensus 3 ~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~-~~-- 79 (407)
T PRK00844 3 MPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLS-GL-- 79 (407)
T ss_pred CCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcc-cc--
Confidence 567999999999999999999999999999999989999999999999999999999999999999997554321 11
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
...++.... .+.. .++.|+.||++|++++++++.+ ...++|+|++||++++.++.++++.|.++++++|+++..
T Consensus 80 ~~~~~~~~~-~~~~--~~~~~~lGta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~ 153 (407)
T PRK00844 80 LGNYITPVP-AQQR--LGKRWYLGSADAIYQSLNLIED---EDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIR 153 (407)
T ss_pred CCCeEEECC-cccC--CCCCcccCCHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEe
Confidence 111121111 1111 2346779999999999999964 223569999999999999999999999999999998877
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC---
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP--- 326 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~--- 326 (526)
++.+.+..||++.+|++|+|..|.|||..+.... ....++++++|+|+|++++|.++++....
T Consensus 154 ~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~~--------------~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 219 (407)
T PRK00844 154 VPREEASAFGVIEVDPDGRIRGFLEKPADPPGLP--------------DDPDEALASMGNYVFTTDALVDALRRDAADED 219 (407)
T ss_pred cchHHcccCCEEEECCCCCEEEEEECCCCccccc--------------CCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCc
Confidence 6545577899999998999999999987532000 00135789999999999998777765221
Q ss_pred CCCChhhchHhhhhcCCcEEEEEe------------cceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCC
Q 043870 327 EANDFGSEVIPMATKDFNVQAYLF------------NDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLP 394 (526)
Q Consensus 327 ~~~d~~~dil~~li~~~~V~~~~~------------~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~ 394 (526)
...++..++++.++++.++++|.+ ++||.||||+++|++||+.+++..+...++++..++++..+..|
T Consensus 220 ~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~ 299 (407)
T PRK00844 220 SSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLP 299 (407)
T ss_pred ccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCC
Confidence 234566799999999889999976 59999999999999999999987766667777788888877778
Q ss_pred Ceee-cCe----eEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCC
Q 043870 395 PSKI-EKC----RVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRD 469 (526)
Q Consensus 395 ~~~i-~~~----~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 469 (526)
|+.+ ... .+.++.||++|.|+.+.|++|+||++|+|+++|+|++++++.+ +.||++
T Consensus 300 ~~~~~~~~~~~~~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~ 360 (407)
T PRK00844 300 PAKFVDGGGRVGSAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRG 360 (407)
T ss_pred CceEecCCCccceEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCC
Confidence 8876 332 5678999999999878899999999999999999999998887 899999
Q ss_pred CEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEc-cCcEEECCCCEE
Q 043870 470 TKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIR-SGITVVLKNTTI 520 (526)
Q Consensus 470 ~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~-~g~~~i~~~~~i 520 (526)
|.|.+|+|+++|+||+++++++.. +.+ +++++|. +|.++|++|++|
T Consensus 361 ~~i~~~ii~~~~~i~~~~~i~~~~---~~~--~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 361 AVVRRAILDKNVVVPPGATIGVDL---EED--RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred CEEEeeEECCCCEECCCCEECCCc---ccc--ccceEeccceEEEeCCCCCC
Confidence 999999999999999999998741 222 4577887 888898888764
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=5.2e-53 Score=449.83 Aligned_cols=387 Identities=36% Similarity=0.668 Sum_probs=315.7
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+.+++|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.|++.. .+
T Consensus 13 ~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~-~~- 90 (425)
T PRK00725 13 TRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFR-EE- 90 (425)
T ss_pred hcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccc-cC-
Confidence 4568999999999999999999999999999999459999999999999999999999999999999986553211 01
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
...++.++...+.. ..+.|+.||++++++++++++. ...++|+|++||++++.++.++++.|.++++++|+++.+
T Consensus 91 ~~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~ 165 (425)
T PRK00725 91 LGEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLE 165 (425)
T ss_pred CCCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEe
Confidence 11235555443331 2346779999999999999963 224789999999999999999999999999999999887
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC---
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP--- 326 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~--- 326 (526)
++.+++..||++.+|++++|..|.|||..+.. +. ....++++++|+|+|++++|.++|++...
T Consensus 166 ~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~------------~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~ 231 (425)
T PRK00725 166 VPREEASAFGVMAVDENDRITAFVEKPANPPA--MP------------GDPDKSLASMGIYVFNADYLYELLEEDAEDPN 231 (425)
T ss_pred cchhhcccceEEEECCCCCEEEEEECCCCccc--cc------------cCccceEEEeeEEEEeHHHHHHHHHHhhcCCC
Confidence 75556778999999988999999999864310 00 00135789999999999998777765321
Q ss_pred CCCChhhchHhhhhcCCcEEEEEec-----------ceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCC
Q 043870 327 EANDFGSEVIPMATKDFNVQAYLFN-----------DYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPP 395 (526)
Q Consensus 327 ~~~d~~~dil~~li~~~~V~~~~~~-----------~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~ 395 (526)
...+|..++++.++++.++++|.++ +||.||||+++|++||+.++...+...+++...++++.....||
T Consensus 232 ~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~ 311 (425)
T PRK00725 232 SSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPP 311 (425)
T ss_pred ccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCC
Confidence 2346778999999999999999886 59999999999999999998876666677777788887778888
Q ss_pred eeec------CeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCC
Q 043870 396 SKIE------KCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRD 469 (526)
Q Consensus 396 ~~i~------~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 469 (526)
+.+- .+.+.+|+||+||+|.++.|.+|+||++|+|+++|+|++|+++++ +.||++
T Consensus 312 ~~~~~~~~~~~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~~ 372 (425)
T PRK00725 312 AKFVFDRSGRRGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGRS 372 (425)
T ss_pred CeEeccCCCCcceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECCC
Confidence 8661 245778999999999778899999999999999999999999988 899999
Q ss_pred CEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEE-ccCcEEECCCCEEC
Q 043870 470 TKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYI-RSGITVVLKNTTIK 521 (526)
Q Consensus 470 ~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I-~~g~~~i~~~~~i~ 521 (526)
|.|.+|+|+++|+|+++++|+... . ..+++.+| ..|+++|++++.+.
T Consensus 373 ~~i~~~ii~~~~~i~~~~~i~~~~-~----~~~~~~~~~~~~~~~i~~~~~~~ 420 (425)
T PRK00725 373 CRLRRCVIDRGCVIPEGMVIGEDP-E----EDAKRFRRSEEGIVLVTREMLDK 420 (425)
T ss_pred CEEeeEEECCCCEECCCCEECCCC-C----CCCceeEecCccEEEECCCcccc
Confidence 999999999999999999997542 1 12334555 47888999987654
No 8
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-50 Score=414.63 Aligned_cols=352 Identities=28% Similarity=0.478 Sum_probs=281.8
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
.|+|||||||+||||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++|..+.+.+|+.+.+.++.
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~------ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGV------ 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCC------
Confidence 48999999999999999999999999999999 99999999999999999999999999999999986532221
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEcc
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
.+.+..... +.||+++|+++.+++.. ++|++++||.+++.|+.+++++|+.+.+..++....+.
T Consensus 74 -~I~y~~e~~---------~lGTag~l~~a~~~l~~------~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~ 137 (358)
T COG1208 74 -RITYVVEKE---------PLGTAGALKNALDLLGG------DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL 137 (358)
T ss_pred -ceEEEecCC---------cCccHHHHHHHHHhcCC------CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC
Confidence 144444332 37999999999999863 78999999999999999999999999888888887776
Q ss_pred CCcCCCceEEEEcCC-CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCC
Q 043870 252 ESRASDFGLMKIDET-GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAND 330 (526)
Q Consensus 252 ~~~~~~~g~v~~d~~-g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d 330 (526)
+. ..||++..+++ ++|.+|.|||..... .++++++|+|+|++++|. +++. ....+
T Consensus 138 ~~--~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~-~i~~--~~~~~ 193 (358)
T COG1208 138 DP--SEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFD-YIEK--GERFD 193 (358)
T ss_pred CC--CcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhh-hccc--CCccc
Confidence 64 78999998844 699999999953110 468999999999999997 4432 33567
Q ss_pred hhhchHhhhhcCCc-EEEEEecceeeecCChhhHHHhchhhcCCCCCcccCCCCCc---ccCCCCCCCCeeecCeeEeee
Q 043870 331 FGSEVIPMATKDFN-VQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKP---IFTSPRFLPPSKIEKCRVQDS 406 (526)
Q Consensus 331 ~~~dil~~li~~~~-V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~---i~~~~~~~~~~~i~~~~i~~s 406 (526)
|..+++|.+++... +++|.++++|.|||||+||.+|+..++.............. +.. ..+.+|++|.. ++
T Consensus 194 ~~~~~~~~l~~~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~----~~ 268 (358)
T COG1208 194 FEEELLPALAAKGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGP----GA 268 (358)
T ss_pred chhhHHHHHHhCCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECC----CC
Confidence 77789999999887 99999999999999999999999999864432211000000 111 33444444432 35
Q ss_pred EECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCC
Q 043870 407 IISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN 486 (526)
Q Consensus 407 ~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 486 (526)
.|+.++.|+. +++||++|+|+++++|+++++|.+ +.||+++.|.+|+|+.||+||++
T Consensus 269 ~i~~~~~i~~----~~~ig~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~ 325 (358)
T COG1208 269 KIGPGALIGP----YTVIGEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGAS 325 (358)
T ss_pred EECCCCEECC----CcEECCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCc
Confidence 5555555555 899999999999999999999998 89999999999999999999992
Q ss_pred cEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 487 VIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 487 ~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
. . +.+ ..++.++.|..|+ +++.++.+..++++
T Consensus 326 ~-~-----i~d-~~~g~~~~i~~g~-~~~~~~~~~~~~~~ 357 (358)
T COG1208 326 L-I-----IGD-VVIGINSEILPGV-VVGPGSVVESGEIE 357 (358)
T ss_pred e-e-----ecc-eEecCceEEcCce-EeCCCccccCcccc
Confidence 2 2 556 7777777777774 44888888777653
No 9
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=2.1e-49 Score=414.10 Aligned_cols=356 Identities=49% Similarity=0.885 Sum_probs=289.4
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.||||+|||.++||||+||+|+||||+|++++|.++|+++|+|++++..+++.+|+.+.|++..-. ...+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~---~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFI---DGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCcc---CCCE
Confidence 6999999999999999999999999999967999999999999999999999999999999998655321100 1125
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCc
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESR 254 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~ 254 (526)
+++...+. ...+.|+.||+++++.+.+++++ ...++|++++||++++.++.++++.|...++++++++.+.+...
T Consensus 78 ~~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~ 152 (361)
T TIGR02091 78 TLLPAQQR--ESGTDWYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKE 152 (361)
T ss_pred EEeCCccc--CCCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHh
Confidence 55443332 13456778999999999998863 22378999999999999999999999888888888888776556
Q ss_pred CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC---CCCCh
Q 043870 255 ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP---EANDF 331 (526)
Q Consensus 255 ~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~---~~~d~ 331 (526)
+..||++.+|++++|..|.|||..+.... . ....+++++|+|+|++++|..+++.... ...++
T Consensus 153 ~~~~g~v~~d~~~~v~~~~ekp~~~~~~~--------~------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 218 (361)
T TIGR02091 153 ASRFGVMQVDEDGRIVDFEEKPANPPSIP--------G------MPDFALASMGIYIFDKDVLKELLEEDADDPESSHDF 218 (361)
T ss_pred cccccEEEECCCCCEEEEEECCCCccccc--------c------cccccEEeeeEEEEcHHHHHHHHHHHhhcCCccccc
Confidence 77899999998899999999985432100 0 0012489999999999998767765321 23456
Q ss_pred hhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccC-CCCCCCCeeec-CeeEeeeEEC
Q 043870 332 GSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFT-SPRFLPPSKIE-KCRVQDSIIS 409 (526)
Q Consensus 332 ~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~-~~~~~~~~~i~-~~~i~~s~Ig 409 (526)
..++++.++++.++++|.++++|.||||+++|.+|++.++++.+....+....++.+ ...+.|+++++ .+.+.++.||
T Consensus 219 ~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig 298 (361)
T TIGR02091 219 GKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVS 298 (361)
T ss_pred HHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEEC
Confidence 679999999989999999999999999999999999999987654434444444432 33556777774 5578889999
Q ss_pred CCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEE
Q 043870 410 HGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVII 489 (526)
Q Consensus 410 ~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i 489 (526)
++|.|+.+.|.+|+||++|+|+++|+|.+++++++ +.||+++.|++|+|+++++||.+++|
T Consensus 299 ~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i 359 (361)
T TIGR02091 299 EGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVI 359 (361)
T ss_pred CCCEECCCEEEccEECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEe
Confidence 99999988899999999999999999999999887 89999999999999999999999999
Q ss_pred cc
Q 043870 490 AN 491 (526)
Q Consensus 490 ~~ 491 (526)
+|
T Consensus 360 ~~ 361 (361)
T TIGR02091 360 GN 361 (361)
T ss_pred CC
Confidence 76
No 10
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=1.3e-49 Score=416.86 Aligned_cols=350 Identities=26% Similarity=0.438 Sum_probs=278.9
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChh-HHHHHhhhcccCCCCcccC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQ-SLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~~~~ 170 (526)
.|+|||||||+|+||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++|..+ ++.+||.+...|+......
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~ 81 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRD 81 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccccC
Confidence 589999999999999999999999999999998899999999999999999999999987 9999997543333221111
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
+...+. .+.. +.+..|++++++.++++++. ...++|+|++||++++.|+.+++++|.++++++|+++.++
T Consensus 82 -~~~~~~--~~e~----~~l~tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v 151 (369)
T TIGR02092 82 -GLFVFP--YNDR----DDLSEGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKV 151 (369)
T ss_pred -cEEEEe--ccCC----CCcccChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEec
Confidence 111111 1221 12224777889888888852 1237899999999999999999999999999999999887
Q ss_pred cCCcCCCce-EEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-C
Q 043870 251 DESRASDFG-LMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-A 328 (526)
Q Consensus 251 ~~~~~~~~g-~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~ 328 (526)
+...+..|| ++..|++|+|..|.+++... ....+++|+|+|++++|..+++...+. .
T Consensus 152 ~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~---------------------~~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 210 (369)
T TIGR02092 152 KPADASEYDTILRFDESGKVKSIGQNLNPE---------------------EEENISLDIYIVSTDLLIELLYECIQRGK 210 (369)
T ss_pred CHHHccccCcEEEEcCCCCEEeccccCCCC---------------------CcceeeeeEEEEEHHHHHHHHHHHhhcCc
Confidence 644456684 56677778888775433221 234678999999999887777654333 2
Q ss_pred CChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCCCCcccC-CCCCcccCCCCCCCCeee-cCeeEeee
Q 043870 329 NDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFY-DPQKPIFTSPRFLPPSKI-EKCRVQDS 406 (526)
Q Consensus 329 ~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~-~~~~~i~~~~~~~~~~~i-~~~~i~~s 406 (526)
.++..++++.++++.++++|.+++||.||||+++|.+||+.+++++.....+ ....++++...+.+|++| ++++|.+|
T Consensus 211 ~~~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~ 290 (369)
T TIGR02092 211 LTSLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVENS 290 (369)
T ss_pred cccHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEEe
Confidence 2445688999888889999999999999999999999999998876432222 223345555556789999 78899999
Q ss_pred EECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCC
Q 043870 407 IISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN 486 (526)
Q Consensus 407 ~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 486 (526)
.||+||.|+ +.|++|+||++|+|+++|.|.+++++.+ +.|++++.|.+|+|+++++||++
T Consensus 291 ~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~~ 350 (369)
T TIGR02092 291 LVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEPN 350 (369)
T ss_pred EEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECCC
Confidence 999999996 6789999999999999999999999988 89999999999999999999999
Q ss_pred cEEccC
Q 043870 487 VIIANK 492 (526)
Q Consensus 487 ~~i~~~ 492 (526)
+.+.+.
T Consensus 351 ~~~~~~ 356 (369)
T TIGR02092 351 VKIAGT 356 (369)
T ss_pred CEeCCC
Confidence 999765
No 11
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=3e-45 Score=381.74 Aligned_cols=326 Identities=21% Similarity=0.364 Sum_probs=235.2
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEecc-ChhHHHHHhhhcccCCCCcccCCC
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQF-NSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~-~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
+|||||||.|+||+|||..+||||+|++|+ |||+|+|++|.++|+++|+|++++ +.+++.+|+.+... |+..
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~~------~~~~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGER------FGAK 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcccc------cCce
Confidence 589999999999999999999999999999 999999999999999999999999 88899999874222 2211
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccC
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDE 252 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~ 252 (526)
+.++. +. +..|++++++.++.++++ ++|++++||++++.++.++++.|.++++++++++.+.++
T Consensus 74 -~~~~~--~~-------~~~G~~~al~~a~~~l~~------~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~ 137 (353)
T TIGR01208 74 -ITYIV--QG-------EPLGLAHAVYTARDFLGD------DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD 137 (353)
T ss_pred -EEEEE--CC-------CCCCHHHHHHHHHHhcCC------CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC
Confidence 22332 21 247999999999988853 679999999999999999999999999999999887654
Q ss_pred CcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC--CCC
Q 043870 253 SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE--AND 330 (526)
Q Consensus 253 ~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~--~~d 330 (526)
+..||++..+++++|.+|.|||..+ .++++++|+|+|++.++. .+++..+. ...
T Consensus 138 --~~~~g~~~~~~~~~v~~~~ekp~~~---------------------~~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~ 193 (353)
T TIGR01208 138 --PTAFGVAVLEDGKRILKLVEKPKEP---------------------PSNLAVVGLYMFRPLIFE-AIKNIKPSWRGEL 193 (353)
T ss_pred --hhhCeEEEEcCCCcEEEEEECCCCC---------------------CccceEEEEEEECHHHHH-HHHhcCCCCCCcE
Confidence 4579998887678999999998754 346889999999997664 56554332 122
Q ss_pred hhhchHhhhhcC-CcEEEEEecceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCCeee-cCeeEeeeEE
Q 043870 331 FGSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQDSII 408 (526)
Q Consensus 331 ~~~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~s~I 408 (526)
+..++++.++++ .++++|.++++|.|||||+||.+||+.++.+... .+ . .+.+.+.+.+|++| ++++|.++.|
T Consensus 194 ~l~d~l~~l~~~g~~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~-~~-~---~i~~~~~i~~~~~i~~~~~i~~~~i 268 (353)
T TIGR01208 194 EITDAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDANRLILDEVER-EV-Q---GVDDESKIRGRVVVGEGAKIVNSVI 268 (353)
T ss_pred EHHHHHHHHHHcCCeEEEEEeCcEEEeCCCHHHHHHHHHHHHhhccc-cc-C---CcCCCCEEcCCEEECCCCEEeCCEE
Confidence 346888888865 6899999999999999999999999999875321 11 1 13334444555555 3444444444
Q ss_pred CCCCEEc-ceeeeceEECCCcEECCCCEEe-----ceEEECCcccchhHHHHHHhhCCCcceEECCC-CEEeceEECCCC
Q 043870 409 SHGCFLR-ECSVEHSIVGIRSRLEYGVELK-----DTMMMGADYYQTEAEIAALLAEGKVPVGIGRD-TKIKNCIIDKNA 481 (526)
Q Consensus 409 g~~~~i~-~~~v~~s~ig~~~~I~~~~~i~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~-~~i~~~iI~~~~ 481 (526)
+.+|.|+ +|.|.+++|+++|.|+++|.|+ +++++.+ +.|+.+ +.+.+|+|+++|
T Consensus 269 ~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~-------------------~~i~~~~~~~~~~ii~~~~ 329 (353)
T TIGR01208 269 RGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDE-------------------SVIEGVQARIVDSVIGKKV 329 (353)
T ss_pred ECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCC-------------------CEEcCCcceeecCEEcCCC
Confidence 4444443 2333444555555555555544 3333332 344444 245556666666
Q ss_pred EECCCcEEc
Q 043870 482 KIGKNVIIA 490 (526)
Q Consensus 482 ~Ig~~~~i~ 490 (526)
+|+.++.+.
T Consensus 330 ~i~~~~~~~ 338 (353)
T TIGR01208 330 RIKGNRRRP 338 (353)
T ss_pred EECCCcccc
Confidence 666665554
No 12
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.8e-43 Score=356.54 Aligned_cols=375 Identities=21% Similarity=0.314 Sum_probs=290.9
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
++.+||||||.||||. +..||-|.|++|+ ||++|+++.+...+.+++.+|+++..+.+.+.+.+.. .
T Consensus 2 ~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~----~----- 68 (460)
T COG1207 2 SLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD----D----- 68 (460)
T ss_pred CceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc----C-----
Confidence 5789999999999999 8899999999999 9999999999999999999999999999888886331 1
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~~ 249 (526)
+.++. |.. ++||++|+.+++.+|.+ ...+++||++||+ |...+ +.++++.|...++.++++.+.
T Consensus 69 --v~~v~--Q~e-------qlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~ 134 (460)
T COG1207 69 --VEFVL--QEE-------QLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAE 134 (460)
T ss_pred --ceEEE--ecc-------cCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEE
Confidence 22222 221 37999999999999942 2345899999999 76665 788999999999999999988
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCC
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN 329 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~ 329 (526)
.++ |..||.+..+++|+|.++.|..+..+ .++.-..+|+|+|+|+...|.++|..... .|
T Consensus 135 ~~d--P~GYGRIvr~~~g~V~~IVE~KDA~~-----------------eek~I~eiNtGiy~f~~~~L~~~L~~l~n-nN 194 (460)
T COG1207 135 LDD--PTGYGRIVRDGNGEVTAIVEEKDASE-----------------EEKQIKEINTGIYAFDGAALLRALPKLSN-NN 194 (460)
T ss_pred cCC--CCCcceEEEcCCCcEEEEEEcCCCCH-----------------HHhcCcEEeeeEEEEcHHHHHHHHHHhcc-cc
Confidence 776 77999999999999999999887642 22355689999999999988888877532 33
Q ss_pred ChhhchHhhhhc-----CCcEEEEEecce--eeecCChhhHHHhchhhcCCC-------------CCcccCCCCCcccCC
Q 043870 330 DFGSEVIPMATK-----DFNVQAYLFNDY--WEDIGTIKSFFDANLSLTDKP-------------PKFHFYDPQKPIFTS 389 (526)
Q Consensus 330 d~~~dil~~li~-----~~~V~~~~~~~~--w~dIgt~~d~~~An~~ll~~~-------------~~~~~~~~~~~i~~~ 389 (526)
..++.+|+++++ +.+|.++...++ ...+++-..+-+|+..+.++. |...+++....+...
T Consensus 195 aqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~D 274 (460)
T COG1207 195 AQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRD 274 (460)
T ss_pred ccCcEeHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCc
Confidence 334444444433 578999988865 567888888888877664321 333344555555555
Q ss_pred CCCCCC------------eee-cCeeEeeeEECCCCEEcc-eeeeceEE------CCCcEECCCCEEeceEEECCcccch
Q 043870 390 PRFLPP------------SKI-EKCRVQDSIISHGCFLRE-CSVEHSIV------GIRSRLEYGVELKDTMMMGADYYQT 449 (526)
Q Consensus 390 ~~~~~~------------~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~i------g~~~~I~~~~~i~~~v~~~~~~~~~ 449 (526)
+.|.|+ |.| .+|+|+||.|+++|.|.. +.+++|.| |+.+++.+++.|++.+.+|+ |+|+
T Consensus 275 vvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGN-FVEv 353 (460)
T COG1207 275 VVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGN-FVEV 353 (460)
T ss_pred eEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEee-eEEE
Confidence 555553 333 356777888888888876 55555555 45555556666677777875 9999
Q ss_pred hHHHHHHhhCCCcceEECCCCE------EeceEECCCCEECCCcEEccCCCcCCc-cccCCCeEEccCcE-----EECCC
Q 043870 450 EAEIAALLAEGKVPVGIGRDTK------IKNCIIDKNAKIGKNVIIANKDGVEEA-ERPSDGFYIRSGIT-----VVLKN 517 (526)
Q Consensus 450 ~~~~~~~~~~~~~~~~Ig~~~~------i~~~iI~~~~~Ig~~~~i~~~~~v~~~-~~~~~~~~I~~g~~-----~i~~~ 517 (526)
+. ..||++++ |.+|.||.++.||++++..|.++...+ +.+|++++|||++. .||++
T Consensus 354 K~------------a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~ 421 (460)
T COG1207 354 KK------------ATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDG 421 (460)
T ss_pred ec------------ccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCC
Confidence 87 67777776 558999999999999999999998865 45699999999885 78999
Q ss_pred CEECCCccC
Q 043870 518 TTIKDGTII 526 (526)
Q Consensus 518 ~~i~~gt~i 526 (526)
++|++||+|
T Consensus 422 a~iaAGStI 430 (460)
T COG1207 422 ATIAAGSTI 430 (460)
T ss_pred cEEcccceE
Confidence 999999986
No 13
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.4e-42 Score=373.93 Aligned_cols=389 Identities=20% Similarity=0.292 Sum_probs=274.3
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
+++.|||||||.|+||++ .+||+|+|++|+ |||+|+|+++.++|++++++++++..+++.+|+.+..
T Consensus 2 ~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~--------- 68 (459)
T PRK14355 2 NNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDG--------- 68 (459)
T ss_pred CcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCC---------
Confidence 358999999999999984 689999999999 9999999999999999999999999988888886421
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
.+.++... ++.|++++++.+++.+++ ..++|++++||+ +...++.++++.|.+.+++++++..
T Consensus 69 --~i~~~~~~---------~~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~ 133 (459)
T PRK14355 69 --DVSFALQE---------EQLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTA 133 (459)
T ss_pred --ceEEEecC---------CCCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEE
Confidence 13333221 137999999999998863 247899999998 4466799999999888888888877
Q ss_pred EccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-
Q 043870 249 PVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE- 327 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~- 327 (526)
+.++ +..|+.+.+|++++|..|.|||..... . ..++++++|+|+|++++|.++++...+.
T Consensus 134 ~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~---------------~--~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 194 (459)
T PRK14355 134 RLEN--PFGYGRIVRDADGRVLRIVEEKDATPE---------------E--RSIREVNSGIYCVEAAFLFDAIGRLGNDN 194 (459)
T ss_pred EcCC--CCcCCEEEEcCCCCEEEEEEcCCCChh---------------H--hhccEEEEEEEEEeHHHHHHHHHHcCccc
Confidence 6654 457999999988999999998743210 0 0246889999999999876777654332
Q ss_pred --CCChhhchHhhhhcC-CcEEEEEecce--eeecCChhhHHHhchhhcCCC------CCcccCCCCC-cccCCCCCCCC
Q 043870 328 --ANDFGSEVIPMATKD-FNVQAYLFNDY--WEDIGTIKSFFDANLSLTDKP------PKFHFYDPQK-PIFTSPRFLPP 395 (526)
Q Consensus 328 --~~d~~~dil~~li~~-~~V~~~~~~~~--w~dIgt~~d~~~An~~ll~~~------~~~~~~~~~~-~i~~~~~~~~~ 395 (526)
...+..++++.++++ .++.+|.++++ |+|++|+++|++|+..++... ....++++.+ .+...+.++++
T Consensus 195 ~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~ 274 (459)
T PRK14355 195 AQGEYYLTDIVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRD 274 (459)
T ss_pred cCCceeHHHHHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCC
Confidence 223457899999876 57999999987 999999999999987665321 1122445543 35555555566
Q ss_pred eee-cCeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHH--HHhhCC--------Cc
Q 043870 396 SKI-EKCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIA--ALLAEG--------KV 462 (526)
Q Consensus 396 ~~i-~~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~--~~~~~~--------~~ 462 (526)
+.| ++|.|. ++.||++|.|+. +.|.+|+||++|.|+.+|.|.++++..+.++...+.+. +.+.++ ..
T Consensus 275 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~ 354 (459)
T PRK14355 275 TTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETK 354 (459)
T ss_pred CEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCcccc
Confidence 555 445444 366777777763 55566777777777776666554443332211110000 000000 01
Q ss_pred ceEECCCCEEe------ceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 463 PVGIGRDTKIK------NCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 463 ~~~Ig~~~~i~------~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
++.||+++++. +++|+++|.||.++++.|.++... ...+|++++|+.+++ .||++++|++||+|
T Consensus 355 ~~~ig~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 355 KIVMGEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred CCEECCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 14455554443 568888888888888877665544 467899999987764 77888888888865
No 14
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2e-42 Score=374.74 Aligned_cols=389 Identities=17% Similarity=0.239 Sum_probs=277.9
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+.++.|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++.+.. .
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~---~---- 70 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA---P---- 70 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC---C----
Confidence 4457999999999999996 589999999999 9999999999999999999999998888888775321 0
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~~ad~ti~~ 247 (526)
. +.++.. .+..|++++++.++.++.+ ...++|++++||+ ++ ..++.++++.|.+.++++++++
T Consensus 71 --~-~~~~~~---------~~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~ 135 (482)
T PRK14352 71 --E-VDIAVQ---------DEQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLT 135 (482)
T ss_pred --c-cEEEeC---------CCCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEE
Confidence 1 222221 1247999999999988852 2246799999998 44 4569999999988888888777
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.+.++ +..||.+..|++++|.+|.|||..... +....++++|+|+|++++|..+++...+.
T Consensus 136 ~~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~ 196 (482)
T PRK14352 136 TTLDD--PTGYGRILRDQDGEVTAIVEQKDATPS-----------------QRAIREVNSGVYAFDAAVLRSALARLSSD 196 (482)
T ss_pred eecCC--CCCCCEEEECCCCCEEEEEECCCCCHH-----------------HhhcceEEEEEEEEEHHHHHHHHHhhCcc
Confidence 76654 567999888888999999999885310 01245789999999999997777654332
Q ss_pred ---CCChhhchHhhhhcC-CcEEEEEecceeeecCChhhH------HHhchhhcCCC---------CCcccCCCCCcccC
Q 043870 328 ---ANDFGSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSF------FDANLSLTDKP---------PKFHFYDPQKPIFT 388 (526)
Q Consensus 328 ---~~d~~~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~------~~An~~ll~~~---------~~~~~~~~~~~i~~ 388 (526)
...+..++++.+++. .+|++|.+++||.|+++++.+ ..+|..++... |...++++.+.+.+
T Consensus 197 ~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~ 276 (482)
T PRK14352 197 NAQGELYLTDVLAIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGR 276 (482)
T ss_pred ccCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECC
Confidence 223457899999886 589999999999999999887 44554443321 11223333333333
Q ss_pred C------------CCCCCCeee-cCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCccc-chhHHH-
Q 043870 389 S------------PRFLPPSKI-EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYY-QTEAEI- 453 (526)
Q Consensus 389 ~------------~~~~~~~~i-~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~-~~~~~~- 453 (526)
. +.++++|.| .+++|.+++||++|.|+++.+.+++||.++.||+++.+..++++|++.. ....++
T Consensus 277 ~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~ 356 (482)
T PRK14352 277 DVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETK 356 (482)
T ss_pred CcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEc
Confidence 3 334444444 3566677888888888777778888999999988888876676665311 100000
Q ss_pred HHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 454 AALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 454 ~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
.+.+..+ +.|+..+.+.+|+||++|.||.++++.|.++... ...+|++++|+.+++ .||++++||+|++|
T Consensus 357 ~~~I~~~---~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v 432 (482)
T PRK14352 357 NATIGRG---TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVI 432 (482)
T ss_pred ccEECCC---cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEE
Confidence 0011111 2333344455789999999999999987654433 366788888876665 77999999999865
No 15
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.1e-41 Score=360.31 Aligned_cols=375 Identities=19% Similarity=0.297 Sum_probs=282.0
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
|+++|||||||.||||+| .+||||+|++|+ |||+|+++.|.++ +++|+|++++..+.+.+|+.+.+ .
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~--------~ 67 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF--------P 67 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC--------C
Confidence 357899999999999996 689999999999 9999999999987 79999999999999999886432 0
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
.+.++..... .+.||+++++.+. ...++|++++||..+. ..+.++.+.+.++++++.+.+.
T Consensus 68 --~v~~~~~~~~-------~~~gt~~al~~~~--------~~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~ 128 (430)
T PRK14359 68 --GVIFHTQDLE-------NYPGTGGALMGIE--------PKHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHL 128 (430)
T ss_pred --ceEEEEecCc-------cCCCcHHHHhhcc--------cCCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEc
Confidence 1444432211 2368999997732 1237899999999331 1234455556677888888777
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC---
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE--- 327 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~--- 327 (526)
++ +..||.+..| +|+|..+.|+|..... . ...+..++|+|+|++++|..+++.....
T Consensus 129 ~~--~~~~g~v~~d-~g~v~~i~e~~~~~~~---------------~--~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~ 188 (430)
T PRK14359 129 AD--PKGYGRVVIE-NGQVKKIVEQKDANEE---------------E--LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQ 188 (430)
T ss_pred CC--CccCcEEEEc-CCeEEEEEECCCCCcc---------------c--ccceEEEeEEEEEEHHHHHHHHHhcCccccc
Confidence 65 4568987775 6899999998864210 0 0246789999999999998766543211
Q ss_pred CCChhhchHhhhhcC-CcEEEEEec-ceeeecCChhhHHHhchhhcCCC-------------CCcccCCCCCcccCCCCC
Q 043870 328 ANDFGSEVIPMATKD-FNVQAYLFN-DYWEDIGTIKSFFDANLSLTDKP-------------PKFHFYDPQKPIFTSPRF 392 (526)
Q Consensus 328 ~~d~~~dil~~li~~-~~V~~~~~~-~~w~dIgt~~d~~~An~~ll~~~-------------~~~~~~~~~~~i~~~~~~ 392 (526)
...+..++++.+++. .++.+|..+ ++|.||+|++||.+|+..+..+. +...++++++.+.+.+.+
T Consensus 189 ~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~i 268 (430)
T PRK14359 189 KEYYLTDIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECEL 268 (430)
T ss_pred CceehhhHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEE
Confidence 223456888888874 789999887 58999999999999987665321 112245566667777788
Q ss_pred CCCeee-cCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCE
Q 043870 393 LPPSKI-EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTK 471 (526)
Q Consensus 393 ~~~~~i-~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ 471 (526)
++++.| .++.+.++.|+++|.|+++.+.+|+||++++|++++.|.++ ++|+. ++.+. +++ +| +.||+++.
T Consensus 269 g~~~~I~~~~~i~~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~-~ig~~-~~i~~---~~~-~~---~~i~~~~~ 339 (430)
T PRK14359 269 EEGVRILGKSKIENSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNT-HIGNF-VETKN---AKL-NG---VKAGHLSY 339 (430)
T ss_pred CCCCEECCCeEEEeeEECCCCEEeccEEeCCEECCCCEECCCcEEecc-EEcCc-EEEcc---cEe-cc---cccccccc
Confidence 888888 67888899999999998888999999999999999988654 44432 22221 122 33 68899999
Q ss_pred EeceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 472 IKNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 472 i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
|.+|+||++|.||.++++.+..+..+ ...+|++++|+++++ .||++++||+|++|
T Consensus 340 i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v 400 (430)
T PRK14359 340 LGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTV 400 (430)
T ss_pred ccCCEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 99999999999999999998766554 357888999987764 77899999998875
No 16
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.5e-41 Score=367.27 Aligned_cols=385 Identities=20% Similarity=0.269 Sum_probs=256.2
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
.++|+|||||||.|+||+| .+||+|+|++|+ |||+|++++|.++|+++|+|+++++.+.+.+|+.. +
T Consensus 5 ~~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~-------- 71 (481)
T PRK14358 5 TRPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG-S-------- 71 (481)
T ss_pred cCCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc-C--------
Confidence 4579999999999999996 489999999999 99999999999999999999999998888888742 1
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~ 247 (526)
.+.++.. .++.|++++++.++.+++. ..++|++++||+ +...++.++++.|.++++++|+++
T Consensus 72 ---~i~~v~~---------~~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~ 135 (481)
T PRK14358 72 ---GVAFARQ---------EQQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILT 135 (481)
T ss_pred ---CcEEecC---------CCcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEE
Confidence 1344332 1247999999999888752 235699999998 445569999999999899999888
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC-
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP- 326 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~- 326 (526)
.++++ +..||++.+|++++|.+|.|||..+.. +.....+++|+|+|+++++ ++++...+
T Consensus 136 ~~~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~-----------------~~~~~~~n~Giyi~~~~~~-~~~~~i~~~ 195 (481)
T PRK14358 136 GELPD--ATGYGRIVRGADGAVERIVEQKDATDA-----------------EKAIGEFNSGVYVFDARAP-ELARRIGND 195 (481)
T ss_pred EEcCC--CCCceEEEECCCCCEEEEEECCCCChh-----------------HhhCCeEEEEEEEEchHHH-HHHHhcCCC
Confidence 87765 456999999989999999999874310 0123568999999997763 34443221
Q ss_pred --CCCChhhchHhhhhcC-CcEEEEEecceeeecCChhhHHHhchh-hcCCC--------------CCcccCCCCCcccC
Q 043870 327 --EANDFGSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLS-LTDKP--------------PKFHFYDPQKPIFT 388 (526)
Q Consensus 327 --~~~d~~~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An~~-ll~~~--------------~~~~~~~~~~~i~~ 388 (526)
....+..|+++.++++ .++++|.++++|..++...+|+.+++. +++.. |....+.+...|..
T Consensus 196 ~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~ 275 (481)
T PRK14358 196 NKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGR 275 (481)
T ss_pred ccCCeEEHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECC
Confidence 1223357899998876 579999999999888888777666653 22111 11111122222222
Q ss_pred CCC------------CCCCeee-cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchh-HHH
Q 043870 389 SPR------------FLPPSKI-EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTE-AEI 453 (526)
Q Consensus 389 ~~~------------~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~-~~~ 453 (526)
.+. +++++.| .+|.|.+++|+++|.|+. +.+.+++||+++.|++++.|...+++|++..-.. .++
T Consensus 276 ~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i 355 (481)
T PRK14358 276 DVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET 355 (481)
T ss_pred CCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence 222 2333333 234444555555555553 3444555555555555555544333333200000 000
Q ss_pred -HHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCc-cccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 454 -AALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEA-ERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 454 -~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~-~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
.+.+..| +.||..+.+.+|+||+||.||.++++.|..+...+ ..+|++++|+.+++ +||++++|++|+++
T Consensus 356 ~~~~i~~~---~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v 432 (481)
T PRK14358 356 KNARLDAG---VKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAV 432 (481)
T ss_pred CCceecCC---cccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 0000011 22233333456889999999999999887665443 47788888887764 68888999888864
No 17
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.1e-41 Score=364.50 Aligned_cols=378 Identities=19% Similarity=0.268 Sum_probs=269.7
Q ss_pred CCCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcc
Q 043870 89 DPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 89 ~~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
.++.|+|||||||.|+||+ ..+||+|+|++|+ |||+|++++|.++|++++++++++..+.+.+++.+.
T Consensus 2 ~~~~~~aiIlAaG~gtRl~---~~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-------- 69 (456)
T PRK09451 2 LNSAMSVVILAAGKGTRMY---SDLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE-------- 69 (456)
T ss_pred CCCCceEEEEcCCCCCcCC---CCCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC--------
Confidence 4667999999999999998 3689999999999 999999999999999999999999888888777521
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVC 246 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~ 246 (526)
.+.++.... ..|++++++.++.++.+ .++|++++||+ +...++.++++.|.+.+ ++++
T Consensus 70 ----~~~~i~~~~---------~~Gt~~al~~a~~~l~~-----~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~ 129 (456)
T PRK09451 70 ----PLNWVLQAE---------QLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLL 129 (456)
T ss_pred ----CcEEEECCC---------CCCcHHHHHHHHHhhcc-----CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEE
Confidence 133332211 36999999999888742 36899999998 45667999998886544 4556
Q ss_pred EEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC
Q 043870 247 CLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326 (526)
Q Consensus 247 ~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~ 326 (526)
+.+.++ +..||++.. ++++|.+|.|||..... +..++++++|+|+|+++.|.++++...+
T Consensus 130 ~~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~-----------------~~~~~~~~~GiYi~~~~~l~~~l~~~~~ 189 (456)
T PRK09451 130 TVKLDN--PTGYGRITR-ENGKVVGIVEQKDATDE-----------------QRQIQEINTGILVANGADLKRWLAKLTN 189 (456)
T ss_pred EEEcCC--CCCceEEEe-cCCeEEEEEECCCCChH-----------------HhhccEEEEEEEEEEHHHHHHHHHhcCC
Confidence 665554 467999754 57899999999964210 0124579999999999999877776433
Q ss_pred C---CCChhhchHhhhhcC-CcEEEEE------ecce--eeecCChhhHHHhchh--h-cCC----CCC-----------
Q 043870 327 E---ANDFGSEVIPMATKD-FNVQAYL------FNDY--WEDIGTIKSFFDANLS--L-TDK----PPK----------- 376 (526)
Q Consensus 327 ~---~~d~~~dil~~li~~-~~V~~~~------~~~~--w~dIgt~~d~~~An~~--l-l~~----~~~----------- 376 (526)
. ...+..|+++.++++ .++.+|. +.|| |.|++++++|++||.. + ... .|.
T Consensus 190 ~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig 269 (456)
T PRK09451 190 NNAQGEYYITDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHG 269 (456)
T ss_pred ccccCceeHHHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEEC
Confidence 2 234567999999986 6899986 4566 7889999999999842 2 211 121
Q ss_pred -cccCCCCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCccc-chhHH
Q 043870 377 -FHFYDPQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYY-QTEAE 452 (526)
Q Consensus 377 -~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~-~~~~~ 452 (526)
-..+++.+.+.+.+.+++++.| .++.|.++.|+++|+|+. +.+++|+||+++.|++++.|.....++++.. ....+
T Consensus 270 ~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~ 349 (456)
T PRK09451 270 RDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVE 349 (456)
T ss_pred CCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceecccee
Confidence 1134455555555566666666 467777888888888874 6667777777777777777764444443210 00000
Q ss_pred HHHHhhCCCcceEECCCCE------EeceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEE
Q 043870 453 IAALLAEGKVPVGIGRDTK------IKNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTI 520 (526)
Q Consensus 453 ~~~~~~~~~~~~~Ig~~~~------i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i 520 (526)
+ ..+.||++++ +.+|+||++|.||+++++.+.++..+ ..++|++++|+.+++ .||.+++|
T Consensus 350 i--------~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i 421 (456)
T PRK09451 350 M--------KKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATI 421 (456)
T ss_pred e--------eceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEE
Confidence 0 0133444444 34678889999999998887655444 477899999987765 67888888
Q ss_pred CCCccC
Q 043870 521 KDGTII 526 (526)
Q Consensus 521 ~~gt~i 526 (526)
++|++|
T Consensus 422 ~~gs~v 427 (456)
T PRK09451 422 GAGTTV 427 (456)
T ss_pred CCCCEE
Confidence 888875
No 18
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=4.2e-41 Score=361.28 Aligned_cols=375 Identities=20% Similarity=0.283 Sum_probs=265.0
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|+|||||||.|+||+| .+||+|+|++|+ |||+|+++++.++|+++++|++++..+.+.+++.+ ++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~-~~---------- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN-RD---------- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC-CC----------
Confidence 6899999999999996 689999999999 99999999999999999999999998888888763 21
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
+.+..... +.|+++++++++.++++ .++|++++||+ ++ ..++.++++.|.+. ..++++.+.
T Consensus 66 -i~~~~~~~---------~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~ 128 (451)
T TIGR01173 66 -VNWVLQAE---------QLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL 128 (451)
T ss_pred -cEEEEcCC---------CCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec
Confidence 33332211 26899999999988852 26799999998 44 45688999888664 356666665
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC---
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE--- 327 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~--- 327 (526)
+ .+..|+.+..|++++|..|.|||..... +...+.+++|+|+|++++|.++++...+.
T Consensus 129 ~--~~~~~g~v~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~ 189 (451)
T TIGR01173 129 P--DPTGYGRIIRENDGKVTAIVEDKDANAE-----------------QKAIKEINTGVYVFDGAALKRWLPKLSNNNAQ 189 (451)
T ss_pred C--CCCCCCEEEEcCCCCEEEEEEcCCCChH-----------------HhcCcEEEEEEEEEeHHHHHHHHHhccccccc
Confidence 4 3556999999888999999998763210 00235789999999999987777654321
Q ss_pred CCChhhchHhhhhcC-CcEEEEEecce--eeecCChhhHHHhchhhcCCC-------------CCc------------cc
Q 043870 328 ANDFGSEVIPMATKD-FNVQAYLFNDY--WEDIGTIKSFFDANLSLTDKP-------------PKF------------HF 379 (526)
Q Consensus 328 ~~d~~~dil~~li~~-~~V~~~~~~~~--w~dIgt~~d~~~An~~ll~~~-------------~~~------------~~ 379 (526)
...+..++++.++++ .++++|.++++ |.+++|++++.+++..+..+. +.. ..
T Consensus 190 ~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~ 269 (451)
T TIGR01173 190 GEYYLTDVIALAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVE 269 (451)
T ss_pred CcEeHHHHHHHHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCE
Confidence 123357888888875 57999999987 999999999988866543211 111 12
Q ss_pred CCCCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECCcc-cchhHHHHHH
Q 043870 380 YDPQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGADY-YQTEAEIAAL 456 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~-~~~~~~~~~~ 456 (526)
+++.+.+.+.+.+++++.| +++.|.++.|+++|.|+ .|.+.+++||.+|.|+++|.|....+++++. +....++
T Consensus 270 i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i--- 346 (451)
T TIGR01173 270 IDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVET--- 346 (451)
T ss_pred EcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceee---
Confidence 2333333333344444455 45666777888888887 4667777777777777777776544444321 0000000
Q ss_pred hhCCCcceEECCCCEE------eceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCCc
Q 043870 457 LAEGKVPVGIGRDTKI------KNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDGT 524 (526)
Q Consensus 457 ~~~~~~~~~Ig~~~~i------~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~gt 524 (526)
..+.||++++| .+|+||++|+||.++++.|.++..+ ...++++++|+.+++ .||++++|++|+
T Consensus 347 -----~~~~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~ 421 (451)
T TIGR01173 347 -----KNARIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGS 421 (451)
T ss_pred -----cCcEECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCC
Confidence 01344444443 3578888888888888887655555 367789999988764 789999999998
Q ss_pred cC
Q 043870 525 II 526 (526)
Q Consensus 525 ~i 526 (526)
+|
T Consensus 422 ~v 423 (451)
T TIGR01173 422 TV 423 (451)
T ss_pred EE
Confidence 75
No 19
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-42 Score=329.06 Aligned_cols=332 Identities=23% Similarity=0.355 Sum_probs=268.6
Q ss_pred ceEEEEEcCC--CCccccCccCCCCccceeeCCcchhHHHHHHHHHh-cCCcEEEEEeccChhHHHHHhhhcccCCCCcc
Q 043870 92 AVASIILGGG--AGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCIN-SGIKKIYILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 92 ~~~aIILAaG--~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
+.+||||.|| +||||+||+.+.||||+||+|+ |||+|.|++|.+ .|..+|+++--|.++.+.+++...-+ .
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~-----e 75 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQ-----E 75 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHh-----h
Confidence 5799999999 6999999999999999999999 999999999998 48999999988887777777764321 1
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
|. -.|.++.++. +.||+++|+.+++.+-. ...+.|+++++|..++..+.++++.|+..+..+|++..
T Consensus 76 ~~-~pvrYL~E~~---------plGtaGgLyhFrdqIl~---g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~t 142 (407)
T KOG1460|consen 76 FK-VPVRYLREDN---------PLGTAGGLYHFRDQILA---GSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVT 142 (407)
T ss_pred cc-cchhhhccCC---------CCCcccceeehhhHHhc---CCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEE
Confidence 11 1144555443 38999999999988853 46689999999999999999999999999999999999
Q ss_pred EccCCcCCCceEEEEc-CCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHH---hh
Q 043870 249 PVDESRASDFGLMKID-ETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLR---WH 324 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d-~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~---~~ 324 (526)
.+..+.+++||.+..| .+|+|.+|.|||... -++++++|+|+|++++|..+-+ +.
T Consensus 143 kvs~e~asnfG~lV~dP~t~evlHYveKPsTf---------------------vSd~InCGvYlF~~eif~~i~~v~~q~ 201 (407)
T KOG1460|consen 143 KVSREQASNFGCLVEDPSTGEVLHYVEKPSTF---------------------VSDIINCGVYLFTPEIFNAIAEVYRQR 201 (407)
T ss_pred EecHhHhhccCeeeecCCcCceEEeecCcchh---------------------hhcccceeEEEecHHHHHHHHHHHHHH
Confidence 9988889999999988 689999999999865 5789999999999998864321 10
Q ss_pred ---------C----CCCCCh---hhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCCCCc--ccCCCCCcc
Q 043870 325 ---------Y----PEANDF---GSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKPPKF--HFYDPQKPI 386 (526)
Q Consensus 325 ---------~----~~~~d~---~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~~~~--~~~~~~~~i 386 (526)
. +...|| ..|+++.++...++++|..+++|..|.|+.+-..||..++++.... ... ++ .-
T Consensus 202 ~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~L-ak-~p 279 (407)
T KOG1460|consen 202 QDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARL-AK-GP 279 (407)
T ss_pred HhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhh-cC-CC
Confidence 0 111333 3689999999999999999999999999999999999998743211 100 00 01
Q ss_pred cCCCCCCCCeeecCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEE
Q 043870 387 FTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGI 466 (526)
Q Consensus 387 ~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~I 466 (526)
.+.+.+..+++|+- .+++.+.+.||+ |+.||.+++||+|++|++|+++.+ +.|
T Consensus 280 gt~a~IigdVyIhP----sakvhptAkiGP----NVSIga~vrvg~GvRl~~sIIl~d-------------------~ei 332 (407)
T KOG1460|consen 280 GTQAEIIGDVYIHP----SAKVHPTAKIGP----NVSIGANVRVGPGVRLRESIILDD-------------------AEI 332 (407)
T ss_pred CCCceEEeeeEEcC----cceeCCccccCC----CceecCCceecCCceeeeeeeccC-------------------cEe
Confidence 22234555555543 355666777777 889999999999999999999998 899
Q ss_pred CCCCEEeceEECCCCEECCCcEEccC
Q 043870 467 GRDTKIKNCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 467 g~~~~i~~~iI~~~~~Ig~~~~i~~~ 492 (526)
.+|+.+-+||||..+.||+|+.+...
T Consensus 333 ~enavVl~sIigw~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 333 EENAVVLHSIIGWKSSIGRWARVEGI 358 (407)
T ss_pred eccceEEeeeecccccccceeeeccc
Confidence 99999999999999999999999754
No 20
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.6e-39 Score=348.90 Aligned_cols=371 Identities=17% Similarity=0.256 Sum_probs=251.2
Q ss_pred CCCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcc
Q 043870 89 DPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 89 ~~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
.++++.|||||||.|+||++ ..||+|+|++|+ |||+|++++|.++|+++++|++++..+.+.+++.+..
T Consensus 2 ~~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~~------- 70 (446)
T PRK14353 2 TDRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKIA------- 70 (446)
T ss_pred ccccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhccC-------
Confidence 46678999999999999984 579999999999 9999999999999999999999999888888875321
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVC 246 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~ 246 (526)
.. +.+... . +..|++++++.++..++. ..++|++++||+ +++. ++..+++ |.+.++++++.
T Consensus 71 --~~-~~~~~~--~-------~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~ 133 (446)
T PRK14353 71 --PD-AEIFVQ--K-------ERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVL 133 (446)
T ss_pred --CC-ceEEEc--C-------CCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEE
Confidence 01 222221 1 136999999999988852 237899999998 5555 4777776 44566778887
Q ss_pred EEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC
Q 043870 247 CLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326 (526)
Q Consensus 247 ~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~ 326 (526)
+.+..+ +..||.+.. ++++|..+.|||..... + ...+++++|+|+|+++.|.++++....
T Consensus 134 ~~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~---------------~--~~~~~~~~Giy~~~~~~l~~~l~~~~~ 193 (446)
T PRK14353 134 GFRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDE---------------E--RAITLCNSGVMAADGADALALLDRVGN 193 (446)
T ss_pred EEEeCC--CCcceEEEE-CCCeEEEEEECCCCChH---------------H--hhceEEEEEEEEEEHHHHHHHHHhhcc
Confidence 777544 457888877 57899999999864210 0 023588999999999887677765432
Q ss_pred C---CCChhhchHhhhhcC-CcEEEEEec-ceeeecCChhhHHHhchhhc---------CC----CCCcccCCCCCcccC
Q 043870 327 E---ANDFGSEVIPMATKD-FNVQAYLFN-DYWEDIGTIKSFFDANLSLT---------DK----PPKFHFYDPQKPIFT 388 (526)
Q Consensus 327 ~---~~d~~~dil~~li~~-~~V~~~~~~-~~w~dIgt~~d~~~An~~ll---------~~----~~~~~~~~~~~~i~~ 388 (526)
. ...+..++++.+++. .+++++..+ ++|.||+||+||.+|+..+. .. .+...++++.+.|.+
T Consensus 194 ~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ 273 (446)
T PRK14353 194 DNAKGEYYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGR 273 (446)
T ss_pred cCCCCcEeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECC
Confidence 1 223456888888764 679999986 57999999999999986442 21 011122333343444
Q ss_pred CCCCCCCeeec-------------CeeEeeeEECCCCEEcc-eeee-ceEECCCcEECCCCEEeceEEECCcccchhHHH
Q 043870 389 SPRFLPPSKIE-------------KCRVQDSIISHGCFLRE-CSVE-HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEI 453 (526)
Q Consensus 389 ~~~~~~~~~i~-------------~~~i~~s~Ig~~~~i~~-~~v~-~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~ 453 (526)
++.++|++.|. .+.|.++.||++|.|+. +.|. +++||++|.|+++|.|.++++..+
T Consensus 274 ~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~--------- 344 (446)
T PRK14353 274 DVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG--------- 344 (446)
T ss_pred CCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC---------
Confidence 44444444332 22333345555555543 3332 455555555555555544333322
Q ss_pred HHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcC-CccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 454 AALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVE-EAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 454 ~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~-~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+.|+.++.+.+++||++|+||.++++.+.++.. ....++++++|+.+++ .||++++||+|++|
T Consensus 345 ----------~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 345 ----------AKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVI 413 (446)
T ss_pred ----------CEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEE
Confidence 455666666678888888888888876654432 2456677777776654 57888888888864
No 21
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.2e-39 Score=350.74 Aligned_cols=381 Identities=17% Similarity=0.256 Sum_probs=255.2
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
.+.|||||||.|+||+ ...||+|+|++|+ |||+|++++|...++++|+|++++..+.+.+++.+.
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~----------- 69 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE----------- 69 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc-----------
Confidence 4899999999999997 5689999999999 999999999999999999999999888777665421
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
.+.++.... +.|++++++.+++++++ ...+++++++||+ ++ ..++.++++.|. ++++++.+.+
T Consensus 70 -~~~~v~~~~---------~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~ 134 (456)
T PRK14356 70 -DARFVLQEQ---------QLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLT 134 (456)
T ss_pred -CceEEEcCC---------CCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEE
Confidence 133333221 36899999999988863 2347899999999 44 445888888775 5677888877
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC---
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP--- 326 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~--- 326 (526)
.++ +..||++.. ++|+|.+|.|||..... .....+.++++|+|+|++++|..+++....
T Consensus 135 ~~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~---------------~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~ 196 (456)
T PRK14356 135 LPD--PGAYGRVVR-RNGHVAAIVEAKDYDEA---------------LHGPETGEVNAGIYYLRLDAVESLLPRLTNANK 196 (456)
T ss_pred cCC--CCCceEEEE-cCCeEEEEEECCCCChH---------------HhhhhcCeEEEEEEEEEHHHHHHHHHhccCccc
Confidence 765 457998876 57899999998863210 000024678999999999998766654322
Q ss_pred CCCChhhchHhhhhc-CCcEEEEEecc--eeeecCChhhHHHhchhhcCCCC-------------CcccCCC------CC
Q 043870 327 EANDFGSEVIPMATK-DFNVQAYLFND--YWEDIGTIKSFFDANLSLTDKPP-------------KFHFYDP------QK 384 (526)
Q Consensus 327 ~~~d~~~dil~~li~-~~~V~~~~~~~--~w~dIgt~~d~~~An~~ll~~~~-------------~~~~~~~------~~ 384 (526)
..+.+..++++.+++ +.++++|.+.+ .|++|+||+||.+|+..+..+.. ...++++ .+
T Consensus 197 ~~e~~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~ 276 (456)
T PRK14356 197 SGEYYITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGA 276 (456)
T ss_pred CCcEEHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCC
Confidence 122345788888875 46799998865 57999999999999877754321 0111222 22
Q ss_pred cccC------CCCCCCCeee-cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCc-----ccchhH
Q 043870 385 PIFT------SPRFLPPSKI-EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGAD-----YYQTEA 451 (526)
Q Consensus 385 ~i~~------~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~-----~~~~~~ 451 (526)
.+.. .+.++++|.| .++.|.+++|+++|.|++ |.+++++||++|.||++|+|....++|.+ +.+.+.
T Consensus 277 ~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~ 356 (456)
T PRK14356 277 EIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKK 356 (456)
T ss_pred EEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeee
Confidence 2222 2334444444 356666677777777764 55666777766666666666544444332 000000
Q ss_pred HHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcC-CccccCCCeEEccCcE-----EECCCCEECCCcc
Q 043870 452 EIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVE-EAERPSDGFYIRSGIT-----VVLKNTTIKDGTI 525 (526)
Q Consensus 452 ~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~-~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~ 525 (526)
+.+..+ +.|+.++.+.+|+||+++.||.++++.+.++.. -..+++++++|+.+++ .||++++|++|++
T Consensus 357 ---~~i~~~---~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~ 430 (456)
T PRK14356 357 ---AVLGKG---AKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSV 430 (456)
T ss_pred ---eEecCC---cEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCE
Confidence 011111 122222333356677777777777666544332 2367788888876655 6788888888886
Q ss_pred C
Q 043870 526 I 526 (526)
Q Consensus 526 i 526 (526)
|
T Consensus 431 v 431 (456)
T PRK14356 431 I 431 (456)
T ss_pred E
Confidence 4
No 22
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.4e-39 Score=349.47 Aligned_cols=370 Identities=20% Similarity=0.269 Sum_probs=257.9
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|+|||||||.|+||++ .+||+|+|++|+ |||+|+|++|.+.+ ++|+|++++..+.+.+|+.+.
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~~------------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPEW------------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcccc------------
Confidence 6899999999999984 689999999999 99999999999975 899999999988877776421
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
+.++.. . ...|++++++.++.++++ .+.|++++||+ +...++.++++.|.++++++++++.+.
T Consensus 64 -~~~~~~--~-------~~~g~~~ai~~a~~~l~~-----~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~ 128 (448)
T PRK14357 64 -VKIFLQ--E-------EQLGTAHAVMCARDFIEP-----GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL 128 (448)
T ss_pred -cEEEec--C-------CCCChHHHHHHHHHhcCc-----CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc
Confidence 222221 1 137999999999988852 37899999998 556679999999988899999998887
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC--
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA-- 328 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~-- 328 (526)
++ +..||++..| +++| .+.|||..+.. ....+++++|+|+|++++|.++++...+..
T Consensus 129 ~~--~~~~g~v~~d-~g~v-~~~e~~~~~~~-----------------~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~ 187 (448)
T PRK14357 129 ED--PTGYGRIIRD-GGKY-RIVEDKDAPEE-----------------EKKIKEINTGIYVFSGDFLLEVLPKIKNENAK 187 (448)
T ss_pred CC--CCCcEEEEEc-CCeE-EEEECCCCChH-----------------HhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCC
Confidence 64 5679998887 6788 78887653210 002368999999999999877776533221
Q ss_pred C-ChhhchHhhhhcCCcEEEEEecce--eeecCChhhHHHhchhhcCC-------------CCCcccCCCCCcccCCCCC
Q 043870 329 N-DFGSEVIPMATKDFNVQAYLFNDY--WEDIGTIKSFFDANLSLTDK-------------PPKFHFYDPQKPIFTSPRF 392 (526)
Q Consensus 329 ~-d~~~dil~~li~~~~V~~~~~~~~--w~dIgt~~d~~~An~~ll~~-------------~~~~~~~~~~~~i~~~~~~ 392 (526)
. .+..++++.+ .++.+|...+| |.+++++++|..|...+... .+...++++.+.|...+.+
T Consensus 188 ~~~~~~d~i~~~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i 264 (448)
T PRK14357 188 GEYYLTDAVNFA---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTII 264 (448)
T ss_pred CeEEHHHHHHhh---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEE
Confidence 1 2235777666 34888888888 66777999998876544210 0111133333334444333
Q ss_pred C------------CCeee-cCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccch-hHHHHHHhh
Q 043870 393 L------------PPSKI-EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQT-EAEIAALLA 458 (526)
Q Consensus 393 ~------------~~~~i-~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~-~~~~~~~~~ 458 (526)
. +++.| +++.|.+|+||++|.|..+.+.+|+||+++.|++++.|++.+++|++..-+ ..++
T Consensus 265 ~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i----- 339 (448)
T PRK14357 265 YPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEI----- 339 (448)
T ss_pred cCCcEEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceee-----
Confidence 3 33333 345556677777777766677788888888888887776655555431000 0000
Q ss_pred CCCcceEECCCCE------EeceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 459 EGKVPVGIGRDTK------IKNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 459 ~~~~~~~Ig~~~~------i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
..+.||++++ +.+++||+||.||+++++.+..+..+ ..+++++++|+.+++ .||+++.||+|++|
T Consensus 340 ---~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 340 ---KKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred ---eccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 0123444443 33577888888888888877665554 378899999988864 77899999998875
No 23
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.4e-39 Score=350.41 Aligned_cols=379 Identities=20% Similarity=0.274 Sum_probs=262.6
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
|.++|||||||.|+||+ ..+||+|+|++|+ |||+|++++|.++|++++++++++..+++.+|+.+.
T Consensus 1 m~~~avIlAaG~g~Rl~---~~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~---------- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMK---SKLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR---------- 66 (458)
T ss_pred CCceEEEEeCCCCcccC---CCCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC----------
Confidence 45789999999999998 3689999999999 999999999999999999999999988888776521
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-e-cccCHHHHHHHHHHcCCcEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-L-YRMDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l-~~~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
+.++... +..|+++++++++.++++ ..+.|++++||. + ...++.++++.|.+.+++.++++.
T Consensus 67 ---~~~~~~~---------~~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~ 130 (458)
T PRK14354 67 ---SEFALQE---------EQLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTA 130 (458)
T ss_pred ---cEEEEcC---------CCCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEE
Confidence 2222211 136999999999988852 236799999997 4 455689999999888888888777
Q ss_pred EccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-
Q 043870 249 PVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE- 327 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~- 327 (526)
+.++ +..|+.+..|++++|..|.|||.... . +...+.+++|+|+|+++.|.+.++...++
T Consensus 131 ~~~~--~~~~g~v~~d~~~~V~~~~ek~~~~~---------------~--~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~ 191 (458)
T PRK14354 131 IAEN--PTGYGRIIRNENGEVEKIVEQKDATE---------------E--EKQIKEINTGTYCFDNKALFEALKKISNDN 191 (458)
T ss_pred EcCC--CCCceEEEEcCCCCEEEEEECCCCCh---------------H--HhcCcEEEEEEEEEEHHHHHHHHHHhCccc
Confidence 6643 45688888888899999999875310 0 01346789999999998776676654332
Q ss_pred --CCChhhchHhhhhcC-CcEEEEEecce--eeecCChhhHHHhchhhcCCC------CCcccCCC-------CCcccCC
Q 043870 328 --ANDFGSEVIPMATKD-FNVQAYLFNDY--WEDIGTIKSFFDANLSLTDKP------PKFHFYDP-------QKPIFTS 389 (526)
Q Consensus 328 --~~d~~~dil~~li~~-~~V~~~~~~~~--w~dIgt~~d~~~An~~ll~~~------~~~~~~~~-------~~~i~~~ 389 (526)
...+..++++.+++. .++++|.++++ |+++++++||..|+..+..+. +...++++ .+.+.+.
T Consensus 192 ~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~ 271 (458)
T PRK14354 192 AQGEYYLTDVIEILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSD 271 (458)
T ss_pred cCCcEeHHHHHHHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCC
Confidence 122346788888764 67999999875 567779999999986543211 11122222 2223333
Q ss_pred CC------------CCCCeee-cCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccch-hHHHHH
Q 043870 390 PR------------FLPPSKI-EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQT-EAEIAA 455 (526)
Q Consensus 390 ~~------------~~~~~~i-~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~-~~~~~~ 455 (526)
+. +++++.| .++.|.++.||++|.|+++.+.+++||++|.|+++|.|...+++|++..-+ ..++
T Consensus 272 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i-- 349 (458)
T PRK14354 272 TVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEI-- 349 (458)
T ss_pred CEEeCCeEEecceEECCCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEE--
Confidence 33 3333333 345566677788888877777888888888888888887555555541000 0000
Q ss_pred HhhCCCcceEECCCCE------EeceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCC
Q 043870 456 LLAEGKVPVGIGRDTK------IKNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDG 523 (526)
Q Consensus 456 ~~~~~~~~~~Ig~~~~------i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~g 523 (526)
..+.|++++. +.+++||+||.||.++.+.|.++... ..+++++++|+.+++ .||++++||+|
T Consensus 350 ------~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~ 423 (458)
T PRK14354 350 ------KKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAG 423 (458)
T ss_pred ------eeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCC
Confidence 0122333333 34567777777788877777554433 466778887776654 67899999998
Q ss_pred ccC
Q 043870 524 TII 526 (526)
Q Consensus 524 t~i 526 (526)
++|
T Consensus 424 ~~v 426 (458)
T PRK14354 424 STI 426 (458)
T ss_pred CEE
Confidence 875
No 24
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.9e-38 Score=340.86 Aligned_cols=375 Identities=19% Similarity=0.268 Sum_probs=266.1
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
+.+||||||.|+||++ .+||+|+|++|+ |||+|++++|.++|+.+++|++++..+.+.+|+.+..
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----------- 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP----------- 66 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC-----------
Confidence 6899999999999985 689999999999 9999999999999999999999998888888875311
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
.+.++... ++.|++++++.++.++++ ..+++++++||+ +...++.++++.|.+.++++++++.+.
T Consensus 67 ~i~~v~~~---------~~~G~~~sv~~~~~~l~~----~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 133 (450)
T PRK14360 67 GLEFVEQQ---------PQLGTGHAVQQLLPVLKG----FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL 133 (450)
T ss_pred CeEEEEeC---------CcCCcHHHHHHHHHHhhc----cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 14444321 136899999999888852 236799999999 445679999999998888888877766
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC---
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE--- 327 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~--- 327 (526)
++ +..||.+..|++|+|.+|.|||..... +..++++++|+|+|+++.|.++++...+.
T Consensus 134 ~~--~~~~g~~~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~ 194 (450)
T PRK14360 134 PN--PKGYGRVFCDGNNLVEQIVEDRDCTPA-----------------QRQNNRINAGIYCFNWPALAEVLPKLSSNNDQ 194 (450)
T ss_pred CC--CCCccEEEECCCCCEEEEEECCCCChh-----------------HhcCcEEEEEEEEEEHHHHHHHHhhccccccC
Confidence 54 456999999999999999999863210 01356899999999999888887664332
Q ss_pred CCChhhchHhhhhcCCcEEEEEecce--eeecCChhhHHHhchhhcCCC------CCccc-------------------C
Q 043870 328 ANDFGSEVIPMATKDFNVQAYLFNDY--WEDIGTIKSFFDANLSLTDKP------PKFHF-------------------Y 380 (526)
Q Consensus 328 ~~d~~~dil~~li~~~~V~~~~~~~~--w~dIgt~~d~~~An~~ll~~~------~~~~~-------------------~ 380 (526)
...+..+.++.+. ++..|...++ |..+++++++..|...+.... +...+ +
T Consensus 195 ~e~~~td~i~~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i 271 (450)
T PRK14360 195 KEYYLTDTVSLLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVII 271 (450)
T ss_pred CceeHHHHHHHHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEE
Confidence 1233456666653 3566666765 466999999988876542110 00111 2
Q ss_pred CCCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhC
Q 043870 381 DPQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAE 459 (526)
Q Consensus 381 ~~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~ 459 (526)
++.+.+.+.+.+++++.| .++.|.++.|+++|.|+.+.+.+++||++++|+.+|.|.+.+++|++.. ++.
T Consensus 272 ~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~---------Ig~ 342 (450)
T PRK14360 272 EPQTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCR---------IGN 342 (450)
T ss_pred CCCCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceE---------ECC
Confidence 223334444455666666 5667778888899888777778888888888888888876555554310 000
Q ss_pred CC--cceEECCCCEE------eceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCCcc
Q 043870 460 GK--VPVGIGRDTKI------KNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDGTI 525 (526)
Q Consensus 460 ~~--~~~~Ig~~~~i------~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~ 525 (526)
+. ..+.||++++| .+++|+++|.||+++++.+..++.. ..++|++++|+.+++ .||++++|++|++
T Consensus 343 ~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~ 422 (450)
T PRK14360 343 FVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGST 422 (450)
T ss_pred CEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCE
Confidence 00 01223333333 3467888888888888887665554 457788888886654 6688888888876
Q ss_pred C
Q 043870 526 I 526 (526)
Q Consensus 526 i 526 (526)
+
T Consensus 423 v 423 (450)
T PRK14360 423 I 423 (450)
T ss_pred E
Confidence 4
No 25
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1e-38 Score=307.87 Aligned_cols=233 Identities=27% Similarity=0.504 Sum_probs=200.9
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChh-HHHHHhhhcccCCCCcccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQ-SLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~~~~~ 171 (526)
|+|||||||.||||+|+|...||+|+||.+| |||+|+|+.|..+||++|.|+++++.. .+++++ ++|.+|+
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~ll------Gdgs~~g- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKELL------GDGSDFG- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhhh------cCccccC-
Confidence 7899999999999999999999999999999 999999999999999999999998554 444443 4566666
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEcc
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
+.+-+..|.. +.|-++|+..+.+++.+ ++|++..||.++..++.++++.+.++..+.++++.+++
T Consensus 73 --v~itY~~Q~~-------p~GlA~Av~~a~~fv~~------~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~ 137 (286)
T COG1209 73 --VDITYAVQPE-------PDGLAHAVLIAEDFVGD------DDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD 137 (286)
T ss_pred --cceEEEecCC-------CCcHHHHHHHHHhhcCC------CceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC
Confidence 4445555654 48999999999999976 99999999998877999999999988888999999998
Q ss_pred CCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-CCC
Q 043870 252 ESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-AND 330 (526)
Q Consensus 252 ~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~~d 330 (526)
+ +++||++++|++++|+.+.|||..+ .|+++-+|+|+|++++|. .++...|+ +.+
T Consensus 138 d--P~rfGV~e~d~~~~v~~l~EKP~~P---------------------~SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGE 193 (286)
T COG1209 138 D--PSRYGVVEFDEDGKVIGLEEKPKEP---------------------KSNLAVTGLYFYDPSVFE-AIKQIKPSARGE 193 (286)
T ss_pred C--cccceEEEEcCCCcEEEeEECCCCC---------------------CCceeEEEEEEeChHHHH-HHHcCCCCCCCc
Confidence 6 6789999999999999999999987 689999999999999995 67776665 344
Q ss_pred hh-hchHhhhhcC-CcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 331 FG-SEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 331 ~~-~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
++ .|+++.++++ ..+......|.|.|.||++||.+|+..+..
T Consensus 194 lEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 194 LEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred eEehHHHHHHHHcCcEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 53 7889888875 556666778899999999999999998865
No 26
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=4.3e-37 Score=303.94 Aligned_cols=240 Identities=35% Similarity=0.622 Sum_probs=194.7
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcE-EEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKK-IYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~-I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
+|||||||.||||+|||..+||||+|++|+||||+|+|++|.++|+++ |+|++++..+.+.+|+.+.++++
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~~~-------- 72 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYKFG-------- 72 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGGGT--------
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeeccccccccccccccccc--------
Confidence 699999999999999999999999999999999999999999999999 55555588888999998655332
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCC-CCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEcc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRN-IENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~-~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
+.+....|.. ..||++||+++...++. .. .++|++++||++++.++.++++.|.++++++++++...+
T Consensus 73 -~~i~~i~~~~-------~~Gta~al~~a~~~i~~---~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 141 (248)
T PF00483_consen 73 -VKIEYIVQPE-------PLGTAGALLQALDFIEE---EDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVP 141 (248)
T ss_dssp -EEEEEEEESS-------SSCHHHHHHHTHHHHTT---SEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEE
T ss_pred -ccceeeeccc-------ccchhHHHHHHHHHhhh---ccccceEEEEeccccccchhhhHHHhhhcccccccccccccc
Confidence 3332222332 26999999999999974 11 245999999999999999999999999886544444444
Q ss_pred CCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHH--hhCCCCC
Q 043870 252 ESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLR--WHYPEAN 329 (526)
Q Consensus 252 ~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~--~~~~~~~ 329 (526)
..+++.||++.+|++|+|.+|.|||..+. .+.++++|+|+|++++|..+++ ...+...
T Consensus 142 ~~~~~~~g~v~~d~~~~V~~~~EKP~~~~--------------------~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~ 201 (248)
T PF00483_consen 142 VEDPSRYGVVEVDEDGRVIRIVEKPDNPN--------------------ASNLINTGIYIFKPEIFDFLLEMIKENARGE 201 (248)
T ss_dssp SSGGGGSEEEEEETTSEEEEEEESCSSHS--------------------HSSEEEEEEEEEETHHHHHHHHHHHTCTTSS
T ss_pred ccccccceeeeeccceeEEEEeccCcccc--------------------cceeccCceEEEcchHHHHHhhhhhccchhh
Confidence 55678999999999999999999998652 1678999999999999976655 2223345
Q ss_pred ChhhchHhhhhcCC-cEEEEEecc--eeeecCChhhHHHhchhhcC
Q 043870 330 DFGSEVIPMATKDF-NVQAYLFND--YWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 330 d~~~dil~~li~~~-~V~~~~~~~--~w~dIgt~~d~~~An~~ll~ 372 (526)
++..++++.++++. .+.++.+++ +|.|||||++|.+||+.+++
T Consensus 202 ~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 202 DFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 66789999999876 556778888 79999999999999998865
No 27
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-37 Score=307.80 Aligned_cols=348 Identities=20% Similarity=0.324 Sum_probs=251.5
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEecc-ChhHHHHHhhhcccCCCCcc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQF-NSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~-~~~~l~~~l~~~~~~~~~~~ 168 (526)
+.+++||++|||.||||..+++..||+||||+++ |||+|+|.+|.++|+++|+|++.. .+..++..|.+.+.....
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~-- 83 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKR-- 83 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCccccc--
Confidence 6778999999999999999999999999999999 999999999999999999999986 344666777655432211
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
...+++-...+.. .||+++|+.....+.. +|||+++||.+.+.++..++++++..++...++..
T Consensus 84 --~~~v~ip~~~~~d--------~gtadsLr~Iy~kikS------~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~ 147 (433)
T KOG1462|consen 84 --PDYVEIPTDDNSD--------FGTADSLRYIYSKIKS------EDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIG 147 (433)
T ss_pred --ccEEEeecccccc--------cCCHHHHhhhhhhhcc------CCEEEEecccccCCCcHHHHHHHhccChhHhHHhc
Confidence 0124433333222 7999999999888863 79999999999999999999999988776555544
Q ss_pred EccCC---------cCCCceEEEEcCC-CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHH
Q 043870 249 PVDES---------RASDFGLMKIDET-GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLL 318 (526)
Q Consensus 249 ~~~~~---------~~~~~g~v~~d~~-g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~ 318 (526)
..... ....+.++-++++ +|+. |.... .+..+.+++..++|+..|.... .+.+.++++|+|+.++++
T Consensus 148 ~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~-y~~~~-~d~~~~l~i~~slL~~~prltl-~t~L~dahiY~~k~~v~d 224 (433)
T KOG1462|consen 148 NALSEVPIPGQKGKKKQARDVIGINEDTERLA-YSSDS-ADEEEPLVIRKSLLWNHPRLTL-TTKLVDAHIYVFKHWVID 224 (433)
T ss_pred cccccccccCcccccccccceeeeccccceeE-EeecC-CcCCCceehhhhhhhcCCceEE-eccccceeeeeeHHHHHH
Confidence 32211 1112334444443 3433 33222 2234566777777776665443 678999999999999996
Q ss_pred HHHHhhCCCCCChhhchHhhhhcC---------------------------------CcEEEEEec--ceeeecCChhhH
Q 043870 319 KVLRWHYPEANDFGSEVIPMATKD---------------------------------FNVQAYLFN--DYWEDIGTIKSF 363 (526)
Q Consensus 319 ~ll~~~~~~~~d~~~dil~~li~~---------------------------------~~V~~~~~~--~~w~dIgt~~d~ 363 (526)
+|... +.-.+|..+++|.+++. .++++|... .-+.+++|.-.|
T Consensus 225 -~l~~~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y 302 (433)
T KOG1462|consen 225 -LLSEK-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSY 302 (433)
T ss_pred -HHhcC-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHH
Confidence 55432 33445666677766652 233444443 457899999999
Q ss_pred HHhch--hhcCCCCCcccCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceE
Q 043870 364 FDANL--SLTDKPPKFHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTM 440 (526)
Q Consensus 364 ~~An~--~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v 440 (526)
+++|+ .+....+...+++.. ++.-...-.+++++++|.|+ .+.|+.|+||.+|.||++++|.+|+
T Consensus 303 ~eiN~~k~~~~l~~e~~~~k~~------------~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSi 370 (433)
T KOG1462|consen 303 MEINRDKKLKKLCSEAKFVKNY------------VKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSI 370 (433)
T ss_pred HhhhHHHHHHHhccccccccch------------hhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeE
Confidence 99994 343322222211110 01111222368899999998 5788999999999999999999999
Q ss_pred EECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccC
Q 043870 441 MMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~ 492 (526)
+|.+ |.||+|+.|.|||||++|.||+++.+.||
T Consensus 371 lm~n-------------------V~vg~G~~IensIIg~gA~Ig~gs~L~nC 403 (433)
T KOG1462|consen 371 LMDN-------------------VVVGDGVNIENSIIGMGAQIGSGSKLKNC 403 (433)
T ss_pred eecC-------------------cEecCCcceecceecccceecCCCeeeee
Confidence 9998 89999999999999999999999999987
No 28
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=2.4e-36 Score=306.30 Aligned_cols=243 Identities=19% Similarity=0.278 Sum_probs=191.9
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCC------
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLG------ 164 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~------ 164 (526)
..|+|||||||.||||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|+++|.++++.+|+.+.+.+.
T Consensus 2 ~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~ 80 (297)
T TIGR01105 2 TNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQR 80 (297)
T ss_pred CceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHHh
Confidence 468999999999999999999999999999999 9999999999999999999999999999999996543210
Q ss_pred ----------CCcccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecc--------
Q 043870 165 ----------DGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYR-------- 226 (526)
Q Consensus 165 ----------~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~-------- 226 (526)
.+.+++ +.+....| .++.||++|++++..++++ ++|++++||++++
T Consensus 81 ~~~~~~~~~~~~~~~~---~~i~~~~q-------~~~lGtg~Av~~a~~~l~~------~~flvv~gD~l~~~~~~~~~~ 144 (297)
T TIGR01105 81 VKRQLLAEVQSICPPG---VTIMNVRQ-------AQPLGLGHSILCARPVVGD------NPFVVVLPDIIIDDATADPLR 144 (297)
T ss_pred cchhhhhhhhhcCCCC---ceEEEeeC-------CCcCchHHHHHHHHHHhCC------CCEEEEECCeeccccccccch
Confidence 011111 22222223 2468999999999999864 6899999999987
Q ss_pred cCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEE----cCCCC---eeeeeccCCccccccccccccccccchhhhc
Q 043870 227 MDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKI----DETGR---IRQFLEKPKGENLRSMQIDTTALGLSAQEAR 299 (526)
Q Consensus 227 ~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~----d~~g~---V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~ 299 (526)
.++.++++.|.++++.+ +++..+.. .++.||++.+ |++|+ |.+|.|||..+..
T Consensus 145 ~~l~~li~~~~~~~~~~-~~~~~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~------------------ 204 (297)
T TIGR01105 145 YNLAAMIARFNETGRSQ-VLAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT------------------ 204 (297)
T ss_pred hHHHHHHHHHHHhCCcE-EEEEEcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc------------------
Confidence 58999999998777765 44444432 3678999998 44564 5899999964310
Q ss_pred CCCceeeeeEEEEcHHHHHHHHHhhCCC-CC-ChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 300 NFPYIASMGIYLFKTEVLLKVLRWHYPE-AN-DFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 300 ~~~~l~~~Giyif~~~~l~~ll~~~~~~-~~-d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
..++++++|+|+|++++|. .++...+. .. ....++++.+++++++++|.++|+|+|||+|++|.+||.++.
T Consensus 205 ~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 205 LDSDLMAVGRYVLSADIWA-ELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred CCcCEEEEEEEEECHHHHH-HHhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 1367899999999999886 55553332 12 224689999999999999999999999999999999998874
No 29
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=7.1e-36 Score=303.39 Aligned_cols=244 Identities=18% Similarity=0.274 Sum_probs=193.4
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCC-----
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLG----- 164 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~----- 164 (526)
++.|+|||||||.||||+|+|..+||||+||+|+ |||+|++++|.++||++|+|++++..+++.+|+...|++.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 3579999999999999999999999999999999 9999999999999999999999999999999997543221
Q ss_pred -----------CCcccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecc-------
Q 043870 165 -----------DGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYR------- 226 (526)
Q Consensus 165 -----------~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~------- 226 (526)
....++ +.+....|.. +.||++|+++++.++.+ ++|+|++||++++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~~------~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIGD------NPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcCC------CCEEEEECCeeccCcccccc
Confidence 000111 2233333332 48999999999998853 6799999999886
Q ss_pred -cCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEEc----CCC---CeeeeeccCCccccccccccccccccchhhh
Q 043870 227 -MDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKID----ETG---RIRQFLEKPKGENLRSMQIDTTALGLSAQEA 298 (526)
Q Consensus 227 -~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d----~~g---~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~ 298 (526)
.|+.++++.|.+.+++++ ++..... .+..||++.+| ++| +|..|.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~-~~~~~~~-~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQV-LAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEE-EEEECCC-CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 479999999988887754 4444332 56789999986 356 78999999974310
Q ss_pred cCCCceeeeeEEEEcHHHHHHHHHhhCCC--CCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 299 RNFPYIASMGIYLFKTEVLLKVLRWHYPE--ANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 299 ~~~~~l~~~Giyif~~~~l~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
..++++++|+|+|++++|..+ +...+. ......++++.+++++++.+|.++|+|+|||+|++|.+|+.++.
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l-~~~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPEL-ERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHH-HhCCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 135789999999999998755 433232 12334689999999999999999999999999999999999983
No 30
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=1.1e-35 Score=291.93 Aligned_cols=232 Identities=25% Similarity=0.437 Sum_probs=194.8
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|++||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+.+ + . .+++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~-~--~--~~~~-- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKE-Y--E--KKLG-- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhc-c--c--ccCC--
Confidence 6899999999999999999999999999999 99999999999999999999999999999999863 2 0 0111
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccC
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDE 252 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~ 252 (526)
+.++...+. ...|++++++.+...+.. ..++|+|++||++++.++.++++.|+++++++++++.+.++
T Consensus 73 -~~i~~~~~~-------~~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (233)
T cd06425 73 -IKITFSIET-------EPLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED 140 (233)
T ss_pred -eEEEeccCC-------CCCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 334332222 137999999999988852 24679999999999999999999999999999999987754
Q ss_pred CcCCCceEEEEcC-CCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCCh
Q 043870 253 SRASDFGLMKIDE-TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDF 331 (526)
Q Consensus 253 ~~~~~~g~v~~d~-~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d~ 331 (526)
+..||++.+|+ +++|.+|.|||..+ .++++++|+|+|++++|..+ +. ...++
T Consensus 141 --~~~~g~v~~d~~~~~v~~~~ekp~~~---------------------~~~~~~~Giyi~~~~~l~~l-~~---~~~~~ 193 (233)
T cd06425 141 --PSKYGVVVHDENTGRIERFVEKPKVF---------------------VGNKINAGIYILNPSVLDRI-PL---RPTSI 193 (233)
T ss_pred --ccccCeEEEcCCCCEEEEEEECCCCC---------------------CCCEEEEEEEEECHHHHHhc-cc---Ccccc
Confidence 45799999987 78999999998754 35679999999999999644 32 22344
Q ss_pred hhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 332 GSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 332 ~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
..++++.++++.+|.+|.++++|.||||+++|++|+..++
T Consensus 194 ~~~~~~~l~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 194 EKEIFPKMASEGQLYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred hhhhHHHHHhcCCEEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 5689999999999999999999999999999999998764
No 31
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=9.2e-36 Score=296.95 Aligned_cols=235 Identities=22% Similarity=0.387 Sum_probs=193.8
Q ss_pred EEEEcCC--CCccccCccCCCCccceeeCCcchhHHHHHHHHHh-cCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 95 SIILGGG--AGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCIN-SGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 95 aIILAaG--~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
||||||| .||||+|||..+||||+||+|+ |||+|+|++|.+ +|+++|+|++++..+++.+|+.+... .++
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~-----~~~- 73 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQ-----EFN- 73 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhccc-----ccC-
Confidence 6999999 8999999999999999999999 999999999999 69999999999999999999974310 111
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEcc
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
..+.++. +.. ..||+++++.+..+++. ...++|+|++||++++.|+.++++.|+++++++|+++.+++
T Consensus 74 ~~i~~~~--~~~-------~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~ 141 (257)
T cd06428 74 VPIRYLQ--EYK-------PLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEAS 141 (257)
T ss_pred ceEEEec--CCc-------cCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcc
Confidence 1133322 221 37999999999988852 22478999999999999999999999999999999998875
Q ss_pred CCcCCCceEEEEc-CCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC---
Q 043870 252 ESRASDFGLMKID-ETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE--- 327 (526)
Q Consensus 252 ~~~~~~~g~v~~d-~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~--- 327 (526)
.+.+..||++..| ++|+|..|.|||... .+.++++|+|+|++++|. .++...+.
T Consensus 142 ~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~---------------------~~~~~~~Giyi~~~~~~~-~i~~~~~~~~~ 199 (257)
T cd06428 142 REQASNYGCIVEDPSTGEVLHYVEKPETF---------------------VSDLINCGVYLFSPEIFD-TIKKAFQSRQQ 199 (257)
T ss_pred ccccccccEEEEeCCCCeEEEEEeCCCCc---------------------ccceEEEEEEEECHHHHH-HHhhhcccccc
Confidence 5556789999998 679999999998743 356899999999999985 44432221
Q ss_pred ---------------CCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhh
Q 043870 328 ---------------ANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 328 ---------------~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~l 370 (526)
..++..++++.++++.++++|.++|||.||+|+++|++||+.+
T Consensus 200 e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 200 EAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred ccccccccccccccceeeehhhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 1234478999999999999999999999999999999999864
No 32
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-34 Score=304.12 Aligned_cols=379 Identities=16% Similarity=0.273 Sum_probs=277.4
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhh-cccCCCCccc
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISR-TYNLGDGMNF 169 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~-~~~~~~~~~~ 169 (526)
...+||+||.-+-+||+|+|...|+.|||+.+. |||+|+|++|..+|+.+++|++..+..++.+|+.+ .|+.. +
T Consensus 23 ~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~----~ 97 (673)
T KOG1461|consen 23 HRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLP----M 97 (673)
T ss_pred cceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhcccccc----c
Confidence 458999999999999999999999999999999 99999999999999999999999999999999986 44221 1
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHH-----cCCcEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHIN-----SGGDIS 244 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~-----~~ad~t 244 (526)
. ..+..+... . ....++++|..-.. .-..++|++++||++.++++.++++.|++ +++-+|
T Consensus 98 ~-~~v~ti~s~-~--------~~S~GDamR~id~k-----~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMT 162 (673)
T KOG1461|consen 98 S-FIVVTICSG-E--------SRSVGDAMRDIDEK-----QLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMT 162 (673)
T ss_pred c-ceEEEEcCC-C--------cCcHHHHHHHHHhc-----ceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEE
Confidence 1 113323222 1 14677777764321 12348999999999999999999999965 355688
Q ss_pred EEEEEccCCcCCCceEEEEcC-CCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 245 VCCLPVDESRASDFGLMKIDE-TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 245 i~~~~~~~~~~~~~g~v~~d~-~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
|+..+.......+--++.+|. +.++..|.+.... ...++.+.++|--.+ +...+.++.+++|-+|+++++..+-++
T Consensus 163 mv~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~~--~~~~~l~~sl~d~~~-~v~vr~DL~dc~IdIcS~~V~sLF~dN 239 (673)
T KOG1461|consen 163 MVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVRE--KHDIQLDLSLFDSND-EVEVRNDLLDCQIDICSPEVLSLFTDN 239 (673)
T ss_pred EEEeccccccCCcceEEEEcCCcceEEeehhhccc--ccccccCHHHhcCCC-cEEEEccCCCceeeEecHhHHHHhhhc
Confidence 887765321223334555664 6789988862221 123566666665443 334488999999999999999744333
Q ss_pred h-CCCCCChhhchHhhhhcCCcEEEEEecc--eeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCC---------CC
Q 043870 324 H-YPEANDFGSEVIPMATKDFNVQAYLFND--YWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTS---------PR 391 (526)
Q Consensus 324 ~-~~~~~d~~~dil~~li~~~~V~~~~~~~--~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~---------~~ 391 (526)
. |+...||-..+|-.-+-+.+|+++.... |..++.+..+|...++.++++|....+ |...+... ..
T Consensus 240 FDyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~V--pd~~~~~~q~~~~~r~~IY 317 (673)
T KOG1461|consen 240 FDYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLV--PDINFSGNQTFSLERRNIY 317 (673)
T ss_pred ccceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhccccc--ccccCCCCceeeecccccc
Confidence 1 2334566666666666789999998875 999999999999999999999832211 22222210 01
Q ss_pred CCCCeee-cCeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECC
Q 043870 392 FLPPSKI-EKCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGR 468 (526)
Q Consensus 392 ~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~ 468 (526)
-++-+.+ +.|.+. ++.||.|+.|+. +.|.+|+||.+|+||++|+|+++.++.+ |+||+
T Consensus 318 k~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igd 378 (673)
T KOG1461|consen 318 KSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGD 378 (673)
T ss_pred cCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECC
Confidence 1233333 233332 477888888874 6678999999999999999999999988 89999
Q ss_pred CCEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 469 DTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 469 ~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
||.|++|+|+.+++|+.++++... ++|+.+ +|+|++-++..+++|
T Consensus 379 nc~I~~aii~d~v~i~~~~~l~~g------------~vl~~~-VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 379 NCRIDHAIICDDVKIGEGAILKPG------------SVLGFG-VVVGRNFVLPKNSKV 423 (673)
T ss_pred CceEeeeEeecCcEeCCCcccCCC------------cEEeee-eEeCCCccccccccc
Confidence 999999999999999999998654 667666 344777777777553
No 33
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=2.4e-34 Score=283.79 Aligned_cols=231 Identities=24% Similarity=0.388 Sum_probs=187.2
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccC-hhHHHHHhhhcccCCCCcccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFN-SQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~-~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|++++. .+++.+|+.... .|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~------~~~- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGS------DLG- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhccc------ccC-
Confidence 6899999999999999999999999999999 9999999999999999999998765 467788886422 222
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCee-cccCHHHHHHHHHHcCCcEEEEEEEc
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHL-YRMDYMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l-~~~dl~~ll~~h~~~~ad~ti~~~~~ 250 (526)
+.+....+. ...|++++++.+..++++ +++++++||++ ++.++.++++.|.++++++++++.+.
T Consensus 73 --~~i~~~~~~-------~~~G~~~al~~a~~~~~~------~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
T cd02538 73 --IRITYAVQP-------KPGGLAQAFIIGEEFIGD------DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEV 137 (240)
T ss_pred --ceEEEeeCC-------CCCCHHHHHHHHHHhcCC------CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 233322232 137999999999988853 67999999984 56679999999988888999988877
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-CC
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-AN 329 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~~ 329 (526)
++ +..||++.+|++|+|..|.|||..+ .+.++++|+|+|++++| ++++...+. ..
T Consensus 138 ~~--~~~~g~v~~d~~g~v~~~~ekp~~~---------------------~~~~~~~Giyi~~~~~l-~~l~~~~~~~~~ 193 (240)
T cd02538 138 ND--PERYGVVEFDENGRVLSIEEKPKKP---------------------KSNYAVTGLYFYDNDVF-EIAKQLKPSARG 193 (240)
T ss_pred Cc--hhcCceEEecCCCcEEEEEECCCCC---------------------CCCeEEEEEEEECHHHH-HHHHhcCCCCCC
Confidence 65 4579999999899999999998753 34678999999999988 466643322 22
Q ss_pred Ch-hhchHhhhhcCCcEEEEEec--ceeeecCChhhHHHhchhh
Q 043870 330 DF-GSEVIPMATKDFNVQAYLFN--DYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 330 d~-~~dil~~li~~~~V~~~~~~--~~w~dIgt~~d~~~An~~l 370 (526)
++ ..++++.++++.++.++.+. ++|.||||+++|++||..+
T Consensus 194 ~~~l~d~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 194 ELEITDVNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred eEEhHHHHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 22 36899999988777777766 9999999999999999865
No 34
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=3.6e-34 Score=289.74 Aligned_cols=235 Identities=22% Similarity=0.368 Sum_probs=188.5
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEecc-ChhHHHHHhhhcccCCCCcc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQF-NSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~-~~~~l~~~l~~~~~~~~~~~ 168 (526)
|+.|+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|+|++++ ..+.+.+|+.+. .+
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g------~~ 73 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDG------SQ 73 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCc------cc
Confidence 3469999999999999999999999999999999 999999999999999999988764 456677787642 23
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCee-cccCHHHHHHHHHHcCCcEEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHL-YRMDYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l-~~~dl~~ll~~h~~~~ad~ti~~ 247 (526)
|+-. +.+. .|.. +.|+++|+..+.+++.+ ++++++.||.+ ++.++.++++.|.+.++++|+++
T Consensus 74 ~g~~-i~y~--~q~~-------~~Gta~Al~~a~~~i~~------~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~ 137 (292)
T PRK15480 74 WGLN-LQYK--VQPS-------PDGLAQAFIIGEEFIGG------DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFA 137 (292)
T ss_pred cCce-eEEE--ECCC-------CCCHHHHHHHHHHHhCC------CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEE
Confidence 3311 3332 2322 37999999999998853 56888999974 58899999999988888899988
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.++++ ++.||++.+|++|+|++|.|||..+ .++++++|+|+|+++++. .++...+.
T Consensus 138 ~~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p---------------------~s~~a~~GiY~~~~~v~~-~~~~~~~~ 193 (292)
T PRK15480 138 YHVND--PERYGVVEFDQNGTAISLEEKPLQP---------------------KSNYAVTGLYFYDNDVVE-MAKNLKPS 193 (292)
T ss_pred EEcCC--cccCcEEEECCCCcEEEEEECCCCC---------------------CCCEEEEEEEEEChHHHH-HHhhcCCC
Confidence 88755 5689999999899999999999754 467899999999999885 55544333
Q ss_pred -CCCh-hhchHhhhhcCCcEEE-EEecc-eeeecCChhhHHHhchhhc
Q 043870 328 -ANDF-GSEVIPMATKDFNVQA-YLFND-YWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 328 -~~d~-~~dil~~li~~~~V~~-~~~~~-~w~dIgt~~d~~~An~~ll 371 (526)
..++ ..++++.++++.++.+ +...+ +|+|+||+++|.+|+..+.
T Consensus 194 ~~ge~~itd~~~~~l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 194 ARGELEITDINRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CCCeeEhHHHHHHHHhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 2223 3688998888776644 56667 4999999999999998774
No 35
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=4.6e-34 Score=286.17 Aligned_cols=244 Identities=22% Similarity=0.335 Sum_probs=190.1
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCc-ccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGM-NFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~-~~~~ 171 (526)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|+|+++.++|+++|+|+++++.+++.+|+.+.+.+.... ..+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999999 9999999999999999999999999999999997544221000 0000
Q ss_pred -----------CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeeccc---CHHHHHHHHH
Q 043870 172 -----------GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRM---DYMDFVQHHI 237 (526)
Q Consensus 172 -----------~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~---dl~~ll~~h~ 237 (526)
..+.+....+ .++.||+++++.+..++++ ++|+|++||+++.. ++.++++.|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~Gt~~al~~~~~~i~~------~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQ-------KEPLGLGHAVLCAKPFIGD------EPFAVLLGDDLIDSKEPCLKQLIEAYE 146 (267)
T ss_pred HHHhhhhhcccCCceEEEEEc-------CCCCChHHHHHHHHHHhCC------CceEEEECCeEEeCCchHHHHHHHHHH
Confidence 0012212122 2347999999999988863 78999999997764 4999999998
Q ss_pred HcCCcEEEEEEEccCCcCCCceEEEEcC----CCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEc
Q 043870 238 NSGGDISVCCLPVDESRASDFGLMKIDE----TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFK 313 (526)
Q Consensus 238 ~~~ad~ti~~~~~~~~~~~~~g~v~~d~----~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~ 313 (526)
+.+++ ++++...+.+++..||++.+|+ .++|..|.|||..... .++++++|+|+|+
T Consensus 147 ~~~~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (267)
T cd02541 147 KTGAS-VIAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (267)
T ss_pred HhCCC-EEEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEEcC
Confidence 87776 4555566544567899999985 2589999999864211 3568999999999
Q ss_pred HHHHHHHHHhhCCC--CCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 314 TEVLLKVLRWHYPE--ANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 314 ~~~l~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
+++|..+ +..... ...+..++++.++++.+|++|.++++|.||||+++|++||+.+.
T Consensus 207 ~~~~~~l-~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 207 PDIFDIL-ENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred HHHHHHH-HhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 9988654 332111 22335688999998889999999999999999999999999874
No 36
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=5e-34 Score=288.26 Aligned_cols=231 Identities=25% Similarity=0.422 Sum_probs=187.1
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEec-cChhHHHHHhhhcccCCCCcccCCC
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQ-FNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~-~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
+|||||||.||||+|+|..+||||+||+|+ |||+|+|++|..+|+++|+|+++ +..+.+.+|+.+ +..|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~------g~~~g-- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD------GSQWG-- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc------ccccC--
Confidence 589999999999999999999999999999 99999999999999999998886 555677777753 22333
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccCHHHHHHHHHHcCCcEEEEEEEcc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMDYMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~dl~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
+.+....|.. +.||++|++.+..++.+ ++++++.||+ ++..++.++++.|.+.++++|+++.+++
T Consensus 72 -~~i~~~~q~~-------~~Gta~al~~a~~~l~~------~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~ 137 (286)
T TIGR01207 72 -VNLSYAVQPS-------PDGLAQAFIIGEDFIGG------DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS 137 (286)
T ss_pred -ceEEEEEccC-------CCCHHHHHHHHHHHhCC------CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc
Confidence 3333333432 37999999999999864 6788999997 5688999999999888888999888876
Q ss_pred CCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-CCC
Q 043870 252 ESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-AND 330 (526)
Q Consensus 252 ~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~~d 330 (526)
+ +..||++.+|++|+|.+|.|||..+ .++++++|+|+|+++++. +++...+. ..+
T Consensus 138 ~--p~~yGvv~~d~~g~V~~i~EKp~~~---------------------~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge 193 (286)
T TIGR01207 138 D--PERYGVVEFDSNGRAISIEEKPAQP---------------------KSNYAVTGLYFYDNRVVE-IARQLKPSARGE 193 (286)
T ss_pred C--HHHCceEEECCCCeEEEEEECCCCC---------------------CCCEEEEEEEEEchHHHH-HHhhcCCCCCCc
Confidence 5 5679999999899999999999744 457899999999999874 66654342 233
Q ss_pred h-hhchHhhhhcCCcEEEEEe-cce-eeecCChhhHHHhchhhc
Q 043870 331 F-GSEVIPMATKDFNVQAYLF-NDY-WEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 331 ~-~~dil~~li~~~~V~~~~~-~~~-w~dIgt~~d~~~An~~ll 371 (526)
+ ..++++.++++.++.++.. .++ |.|+||+++|.+|+..+.
T Consensus 194 ~eitdv~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 194 LEITDLNRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred EeHHHHHHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHHH
Confidence 3 3689999998876665555 576 999999999999998763
No 37
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=8.6e-34 Score=282.44 Aligned_cols=234 Identities=20% Similarity=0.325 Sum_probs=190.3
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc--CC
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF--GD 171 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~--~~ 171 (526)
+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+....+.+.++ ..
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 999999999999999999999999999999998742211111110 00
Q ss_pred C------------eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHc
Q 043870 172 G------------FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINS 239 (526)
Q Consensus 172 ~------------~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~ 239 (526)
+ .+.+.. + ..+.||++++++++.++.+ ++|++++||++++.|+.++++.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~-------~~~~gt~~al~~~~~~i~~------e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVD--T-------GESTQTGGRLKRVREYLDD------EAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeeee--c-------CCcCCcHHHHHHHHHhcCC------CeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0 011111 1 1137999999999988853 78999999999999999999999999
Q ss_pred CCcEEEEEEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHH
Q 043870 240 GGDISVCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLK 319 (526)
Q Consensus 240 ~ad~ti~~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ 319 (526)
++++|+++.+ .+..||++.+|+ ++|+.|.|||... +.++++|+|+|++++| +
T Consensus 145 ~~d~tl~~~~----~~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il-~ 196 (254)
T TIGR02623 145 GKKATVTAVQ----PPGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVL-D 196 (254)
T ss_pred CCCEEEEEec----CCCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHH-h
Confidence 9999877652 245799999985 6999999998532 3578999999999998 4
Q ss_pred HHHhhCCCCCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCC
Q 043870 320 VLRWHYPEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP 374 (526)
Q Consensus 320 ll~~~~~~~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~ 374 (526)
+++.. ..++..++++.++++.++.+|.++|||.||||+++|.+|+..+....
T Consensus 197 ~l~~~---~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~~ 248 (254)
T TIGR02623 197 LIDGD---ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWESGR 248 (254)
T ss_pred hcccc---CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcCC
Confidence 66542 23566799999999889999999999999999999999999887654
No 38
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=5.1e-34 Score=284.64 Aligned_cols=240 Identities=21% Similarity=0.288 Sum_probs=186.6
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCC-----Cc
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGD-----GM 167 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~-----~~ 167 (526)
|+|||||||.||||+|||..+||||+|++|+ |||+|+|++|.++|+++|+|++++..+++.+|+.+.+.+.. +.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999999 99999999999999999999999999999999975432210 00
Q ss_pred ccC-------CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeeccc---CHHHHHHHHH
Q 043870 168 NFG-------DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRM---DYMDFVQHHI 237 (526)
Q Consensus 168 ~~~-------~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~---dl~~ll~~h~ 237 (526)
.+. .....+....+ .++.||+++++.++.++.+ ++|+|++||+++.. ++.++++.|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~G~~~al~~~~~~~~~------~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQ-------KEQKGLGHAVLCAEPFVGD------EPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEec-------CCCCCHHHHHHHHHHhhCC------CCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 00011111112 2347999999999988753 78999999997754 6999999999
Q ss_pred HcCCcEEEEEEEccCCcCCCceEEEEcC----CCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEc
Q 043870 238 NSGGDISVCCLPVDESRASDFGLMKIDE----TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFK 313 (526)
Q Consensus 238 ~~~ad~ti~~~~~~~~~~~~~g~v~~d~----~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~ 313 (526)
++++++ +++..++.+++..||++..|. +++|..|.|||..... .++++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 888886 556566555577899999862 3699999999953211 3568999999999
Q ss_pred HHHHHHHHHhhCCCC-CChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHh
Q 043870 314 TEVLLKVLRWHYPEA-NDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDA 366 (526)
Q Consensus 314 ~~~l~~ll~~~~~~~-~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~A 366 (526)
+++|..+.+...... ..+..++++.++++.+|++|.++|||.||||+++|++|
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 998875543321112 23346889999998999999999999999999999976
No 39
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=3.1e-33 Score=284.53 Aligned_cols=245 Identities=21% Similarity=0.335 Sum_probs=194.3
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcc-
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMN- 168 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~- 168 (526)
.+-|+|||||||.|+||+|+|..+||+|+||+|+ |+|+|+|++|.++|+++|+|++++..+++.+|+.+.++|+...+
T Consensus 6 ~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~ 84 (302)
T PRK13389 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEK 84 (302)
T ss_pred ccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhh
Confidence 4458999999999999999999999999999999 99999999999999999999999999999999975443321000
Q ss_pred -----cCCC-------eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecc--------cC
Q 043870 169 -----FGDG-------FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYR--------MD 228 (526)
Q Consensus 169 -----~~~~-------~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~--------~d 228 (526)
+... ...+....|. ...||+++++++..++.+ ++|+|++||++++ .+
T Consensus 85 ~~~~~~~~e~~~i~~~~~~i~~~~q~-------~~~Gtg~Av~~a~~~~~~------~~~lVl~gD~~~~~~~~~~~~~d 151 (302)
T PRK13389 85 RVKRQLLDEVQSICPPHVTIMQVRQG-------LAKGLGHAVLCAHPVVGD------EPVAVILPDVILDEYESDLSQDN 151 (302)
T ss_pred hhhhHHHHhhhhccccCceEEEeecC-------CCCChHHHHHHHHHHcCC------CCEEEEeCcceeccccccccccc
Confidence 0000 0112222222 247999999999888753 7899999999874 68
Q ss_pred HHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEEcC-------CCCeeeeeccCCccccccccccccccccchhhhcCC
Q 043870 229 YMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDE-------TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNF 301 (526)
Q Consensus 229 l~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~-------~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~ 301 (526)
+.++++.|.+++++ ++++.++++ +..||++..|+ +++|..|.|||..... .
T Consensus 152 l~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~ 209 (302)
T PRK13389 152 LAEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------P 209 (302)
T ss_pred HHHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------C
Confidence 99999999888876 677777644 56899998863 3579999999974211 3
Q ss_pred CceeeeeEEEEcHHHHHHHHHhhCCC--CCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 302 PYIASMGIYLFKTEVLLKVLRWHYPE--ANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 302 ~~l~~~Giyif~~~~l~~ll~~~~~~--~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
++++++|+|+|++++| ++++...+. ...+..++++.++++.++.+|.++|+|+|||||++|.+|+..+.
T Consensus 210 s~~~~~GiYi~~~~il-~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 210 SNLAIVGRYVLSADIW-PLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred ccEEEEEEEEECHHHH-HHHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 5689999999999998 577654322 22345799999999899999999999999999999999999874
No 40
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=1.2e-32 Score=270.39 Aligned_cols=232 Identities=26% Similarity=0.413 Sum_probs=190.2
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|+|||||||.|+||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|++++..+.+.+|+.+.+.+ +..
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~------~~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRF------GVR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhhc------CCe
Confidence 7899999999999999999999999999999 999999999999999999999999989999998753322 111
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccC
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDE 252 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~ 252 (526)
+.++. +. +..|++++++.++..+.+ +++++++||++++.++.++++.|.+.++++++++.+.++
T Consensus 74 -i~~~~--~~-------~~~g~~~sl~~a~~~i~~------~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (236)
T cd04189 74 -ITYIL--QE-------EPLGLAHAVLAARDFLGD------EPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED 137 (236)
T ss_pred -EEEEE--CC-------CCCChHHHHHHHHHhcCC------CCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC
Confidence 33332 21 237999999999988753 689999999999999999999999988999988887754
Q ss_pred CcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC--CCC
Q 043870 253 SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE--AND 330 (526)
Q Consensus 253 ~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~--~~d 330 (526)
+..||++.+|+ ++|..+.|||..+ .+.++++|+|+|++++|.. ++...+. ...
T Consensus 138 --~~~~g~~~~d~-~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~~~~-l~~~~~~~~~~~ 192 (236)
T cd04189 138 --PRRFGVAVVDD-GRIVRLVEKPKEP---------------------PSNLALVGVYAFTPAIFDA-ISRLKPSWRGEL 192 (236)
T ss_pred --cccceEEEEcC-CeEEEEEECCCCC---------------------CCCEEEEEEEEeCHHHHHH-HHhcCCCCCCeE
Confidence 45789888874 5999999998643 2457899999999998864 4432222 122
Q ss_pred hhhchHhhhhcC-CcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 331 FGSEVIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 331 ~~~dil~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
...++++.++++ .+|++|.++++|.||||++||.+||..+++
T Consensus 193 ~~~d~~~~~i~~g~~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 193 EITDAIQWLIDRGRRVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred EHHHHHHHHHHcCCcEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 246888888864 679999999999999999999999998875
No 41
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=4e-33 Score=271.47 Aligned_cols=219 Identities=21% Similarity=0.341 Sum_probs=181.3
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCe
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGF 173 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 173 (526)
+|||||||.|+||+|+|..+||||+|++|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+.+ + +
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~-~------~--- 69 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDSR-F------G--- 69 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhccc-C------C---
Confidence 589999999999999999999999999999 9999999999999999999999999999999987511 2 1
Q ss_pred EEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHH--HcCCcEEEEEEEcc
Q 043870 174 VEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHI--NSGGDISVCCLPVD 251 (526)
Q Consensus 174 v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~--~~~ad~ti~~~~~~ 251 (526)
+.+....+. .+..|++++++.++.++++ ++|++++||++++.++.++++.|. ..++.+++...+.+
T Consensus 70 ~~i~~~~~~------~~~~g~~~~l~~~~~~~~~------~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (221)
T cd06422 70 LRITISDEP------DELLETGGGIKKALPLLGD------EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP 137 (221)
T ss_pred ceEEEecCC------CcccccHHHHHHHHHhcCC------CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC
Confidence 223322221 0237999999999988853 789999999999999999999998 45666666655544
Q ss_pred CCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCCh
Q 043870 252 ESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDF 331 (526)
Q Consensus 252 ~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d~ 331 (526)
....||.+.+|++|+|..+.|||.. +++++|+|+|++++|..+.+. ...
T Consensus 138 --~~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~ 186 (221)
T cd06422 138 --GHNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFS 186 (221)
T ss_pred --CCCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----ccc
Confidence 3567899999989999999988742 478999999999998755322 223
Q ss_pred hhchHhhhhcCCcEEEEEecceeeecCChhhHHHh
Q 043870 332 GSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDA 366 (526)
Q Consensus 332 ~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~A 366 (526)
..++++.++++.++.+|.++++|.||||+++|.+|
T Consensus 187 ~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 187 LNPLWDRAIAAGRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred HHHHHHHHHHcCCeEEEecCCEEEcCCCHHHHhhC
Confidence 46899999998899999999999999999999876
No 42
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=2.3e-32 Score=271.94 Aligned_cols=243 Identities=19% Similarity=0.309 Sum_probs=190.8
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc--CCC
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF--GDG 172 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~--~~~ 172 (526)
|||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++|..+++.+|+.+.+..+....+ ..+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999999 999999999999999999999999999999999764321111110 111
Q ss_pred eEEEEecccccCc---CCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 173 FVEVLAATQRQGE---SGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 173 ~v~vl~~~~~~~~---~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
.+.++........ ..+....||+++++.++.++.+ .++|++++||++++.++.++++.|...++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-----~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-----DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC-----CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec
Confidence 1222221000000 0001126799999999988852 2689999999999999999999999999998887653
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCC
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN 329 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~ 329 (526)
....||++.+|++|+|..+.|||... +..+++|+|+|++++|. .++.. ..
T Consensus 155 ----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~-~l~~~---~~ 204 (253)
T cd02524 155 ----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFD-YIDGD---DT 204 (253)
T ss_pred ----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHH-hhccc---cc
Confidence 24579999999999999999998642 24789999999999985 44432 34
Q ss_pred ChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCC
Q 043870 330 DFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDK 373 (526)
Q Consensus 330 d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~ 373 (526)
++..++++.++++.++.+|.++|+|.||+|+++|.+|+..+...
T Consensus 205 ~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~~~ 248 (253)
T cd02524 205 VFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWNSG 248 (253)
T ss_pred hhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHHcC
Confidence 56678999999988999999999999999999999999877553
No 43
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=100.00 E-value=2.8e-32 Score=264.56 Aligned_cols=223 Identities=24% Similarity=0.447 Sum_probs=185.6
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+.+ +.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~~------~~~-~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRG------GIR-I 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcccc------Cce-E
Confidence 69999999999999999999999999999 999999999999999999999999998888888754311 111 2
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCc
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESR 254 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~ 254 (526)
.+... +. ..|++++++.++..+.+ ++|++++||+++..++.++++.|.+.++++++++.+.++
T Consensus 73 ~~~~~-~~--------~~G~~~~l~~a~~~~~~------~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 135 (223)
T cd06915 73 YYVIE-PE--------PLGTGGAIKNALPKLPE------DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD-- 135 (223)
T ss_pred EEEEC-CC--------CCcchHHHHHHHhhcCC------CCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--
Confidence 22221 11 27999999999888743 789999999999999999999998888888888877644
Q ss_pred CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCChhhc
Q 043870 255 ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSE 334 (526)
Q Consensus 255 ~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d~~~d 334 (526)
...|+.+.+|++|+|..|.|||... .++++++|+|+|++++|..+.+. ..++..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~ 190 (223)
T cd06915 136 ASRYGNVTVDGDGRVIAFVEKGPGA---------------------APGLINGGVYLLRKEILAEIPAD----AFSLEAD 190 (223)
T ss_pred CCcceeEEECCCCeEEEEEeCCCCC---------------------CCCcEEEEEEEECHHHHhhCCcc----CCChHHH
Confidence 4578999999889999999987643 35688999999999998644221 2345678
Q ss_pred hHhhhhcCCcEEEEEecceeeecCChhhHHHhc
Q 043870 335 VIPMATKDFNVQAYLFNDYWEDIGTIKSFFDAN 367 (526)
Q Consensus 335 il~~li~~~~V~~~~~~~~w~dIgt~~d~~~An 367 (526)
+++.++++.++.+|.++++|.||||++||.+|+
T Consensus 191 ~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 191 VLPALVKRGRLYGFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred HHHHHHhcCcEEEEecCCeEEecCCHHHHHhhC
Confidence 999999877999999999999999999999984
No 44
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=1.1e-31 Score=259.34 Aligned_cols=217 Identities=30% Similarity=0.560 Sum_probs=182.3
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.|+||+|+|..+||+|+|++|+ |||+|++++|.++|+++|+|++++..+.+.+|+.+.+.+ +. .+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~------~~-~i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKF------GV-NI 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhc------Cc-eE
Confidence 69999999999999999999999999999 999999999999999999999999988988998754211 11 13
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCc
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESR 254 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~ 254 (526)
.++. +. ...|++++++.++..+.+ ++|++++||++++.++.++++.|.++++++++++.+.+ +
T Consensus 73 ~~~~--~~-------~~~g~~~al~~~~~~~~~------~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 135 (217)
T cd04181 73 EYVV--QE-------EPLGTAGAVRNAEDFLGD------DDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--D 135 (217)
T ss_pred EEEe--CC-------CCCccHHHHHHhhhhcCC------CCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--C
Confidence 3332 22 126999999999888732 78999999999999999999999999999999888766 4
Q ss_pred CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCChhhc
Q 043870 255 ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSE 334 (526)
Q Consensus 255 ~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d~~~d 334 (526)
+..|+++.+|++|+|..+.|||... ..+.+++|+|+|++++| ++++.......++..+
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~---------------------~~~~~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~ 193 (217)
T cd04181 136 PSRYGVVELDDDGRVTRFVEKPTLP---------------------ESNLANAGIYIFEPEIL-DYIPEILPRGEDELTD 193 (217)
T ss_pred CCcceEEEEcCCCcEEEEEECCCCC---------------------CCCEEEEEEEEECHHHH-HhhhhcCCcccccHHH
Confidence 6689999999889999999998753 24689999999999988 4665533223466789
Q ss_pred hHhhhhcCCcEEEEEecceeeecC
Q 043870 335 VIPMATKDFNVQAYLFNDYWEDIG 358 (526)
Q Consensus 335 il~~li~~~~V~~~~~~~~w~dIg 358 (526)
+++.++++.++++|.++|+|.|||
T Consensus 194 ~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 194 AIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred HHHHHHhcCCEEEEEcCCEEecCC
Confidence 999999999999999999999986
No 45
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.98 E-value=6.3e-31 Score=255.40 Aligned_cols=219 Identities=26% Similarity=0.474 Sum_probs=176.9
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+|++|.++|+++|+|++++..+.+.+|+.+... |+.. +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~------~~~~-i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSK------FGVN-I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCccc------cCcc-E
Confidence 69999999999999999999999999999 99999999999999999999999998888888874321 2211 3
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCc
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESR 254 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~ 254 (526)
.++. +. .+.|+++++..+.... .++|+|++||.+++.++.++++.|...++++++++.+.+.
T Consensus 73 ~~~~--~~-------~~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~-- 134 (220)
T cd06426 73 SYVR--ED-------KPLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV-- 134 (220)
T ss_pred EEEE--CC-------CCCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 2322 21 1368999997765443 3789999999999999999999999888888888876543
Q ss_pred CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCChhhc
Q 043870 255 ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDFGSE 334 (526)
Q Consensus 255 ~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d~~~d 334 (526)
...||++..|+ ++|..|.|||.. +.++++|+|+|+++++..+ +. .......+
T Consensus 135 ~~~~g~~~~d~-~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~ 186 (220)
T cd06426 135 QVPYGVVETEG-GRITSIEEKPTH-----------------------SFLVNAGIYVLEPEVLDLI-PK---NEFFDMPD 186 (220)
T ss_pred CCcceEEEECC-CEEEEEEECCCC-----------------------CCeEEEEEEEEcHHHHhhc-CC---CCCcCHHH
Confidence 35689999885 899999998763 3578999999999998643 22 11112467
Q ss_pred hHhhhhcC-CcEEEEEecceeeecCChhhHHHhc
Q 043870 335 VIPMATKD-FNVQAYLFNDYWEDIGTIKSFFDAN 367 (526)
Q Consensus 335 il~~li~~-~~V~~~~~~~~w~dIgt~~d~~~An 367 (526)
+++.++++ .++++|.++++|.||||++||.+||
T Consensus 187 ~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 187 LIEKLIKEGKKVGVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred HHHHHHHCCCcEEEEEeCCeEEeCCCHHHHHhhC
Confidence 88888875 5799999999999999999999986
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3e-31 Score=256.24 Aligned_cols=250 Identities=23% Similarity=0.329 Sum_probs=207.8
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
++-.+|||+|||.||||-|.|+..||-||||.++ |+|+|+++.+.++||++|++||+.++..+.+|+...|++.....-
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 3457999999999999999999999999999999 999999999999999999999999999999999887755321110
Q ss_pred C------------CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeeccc---CHHHHHH
Q 043870 170 G------------DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRM---DYMDFVQ 234 (526)
Q Consensus 170 ~------------~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~---dl~~ll~ 234 (526)
. ...+.+.+..|. .++|.++|+.+|..++.+ ++|.|+.+|.++.. .+.++++
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~-------e~~GLGhAVl~A~~~vg~------EpFaVlL~Ddl~~~~~~~l~qmi~ 147 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQK-------EPLGLGHAVLCAKPFVGD------EPFAVLLPDDLVDSEKPCLKQMIE 147 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecC-------CCCcchhHHHhhhhhcCC------CceEEEeCCeeecCCchHHHHHHH
Confidence 0 112344444444 368999999999999986 89999999998865 3889999
Q ss_pred HHHHcCCcEEEEEEEccCCcCCCceEEE----EcCC-CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeE
Q 043870 235 HHINSGGDISVCCLPVDESRASDFGLMK----IDET-GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGI 309 (526)
Q Consensus 235 ~h~~~~ad~ti~~~~~~~~~~~~~g~v~----~d~~-g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Gi 309 (526)
.+.+.+.. ++.+.+++.++.++||++. .+++ .+|..+.|||...+. .|+++..|-
T Consensus 148 ~ye~~g~s-vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~A-------------------PSnlai~GR 207 (291)
T COG1210 148 LYEETGGS-VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEA-------------------PSNLAIVGR 207 (291)
T ss_pred HHHHhCCc-EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCC-------------------Ccceeeeee
Confidence 99888774 5778888877889999998 3333 589999999986543 689999999
Q ss_pred EEEcHHHHHHHHHhhCCCC-CC-hhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCC
Q 043870 310 YLFKTEVLLKVLRWHYPEA-ND-FGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP 374 (526)
Q Consensus 310 yif~~~~l~~ll~~~~~~~-~d-~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~ 374 (526)
|+|++++|. +|++..+.. ++ ...|.|..+++.+.|++|.++|..+|+|+...|.+|+..+..+.
T Consensus 208 Yil~p~IFd-~L~~~~~G~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~~ 273 (291)
T COG1210 208 YVLTPEIFD-ILEETKPGAGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALRR 273 (291)
T ss_pred eecCHHHHH-HHhhCCCCCCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhhC
Confidence 999999996 777754442 23 35889999999999999999999999999999999999887654
No 47
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.96 E-value=2.3e-29 Score=244.67 Aligned_cols=207 Identities=14% Similarity=0.230 Sum_probs=158.7
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
++|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+.+.++... ...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~--~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKS--SLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcccccccc--Ccc
Confidence 4899999999999999999999999999999 9999999999999999999999999999999998654332211 001
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHH-----cCCcEEEEE
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHIN-----SGGDISVCC 247 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~-----~~ad~ti~~ 247 (526)
.+.+... . ...|++++++..... . ...++|++++||++++.++.++++.|++ +++++|+++
T Consensus 78 ~i~~~~~--~-------~~~~~~~al~~~~~~-~----~~~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~ 143 (217)
T cd04197 78 IVIIIMS--E-------DCRSLGDALRDLDAK-G----LIRGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVL 143 (217)
T ss_pred eEEEEeC--C-------CcCccchHHHHHhhc-c----ccCCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEE
Confidence 1333322 1 135788888654321 0 1127899999999999999999999987 478899988
Q ss_pred EEccCCcC----CCceEEEEcCC-CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHH
Q 043870 248 LPVDESRA----SDFGLMKIDET-GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL 317 (526)
Q Consensus 248 ~~~~~~~~----~~~g~v~~d~~-g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l 317 (526)
.++++++. .+++++.+|++ ++|..|.|||..+.....+++.+++...+.. ..++++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~-~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 144 KEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEV-EIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcE-EEECCceecCEEEeCCCCC
Confidence 88766442 24678888866 8999999999876544444555555433332 3478999999999999864
No 48
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.96 E-value=1.1e-28 Score=241.49 Aligned_cols=222 Identities=18% Similarity=0.254 Sum_probs=171.1
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+.+.+|+.+.. + +
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~--------~---~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKYP--------N---I 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhccC--------C---e
Confidence 69999999999999999999999999999 9999999999999999999999999999888876321 1 4
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCc
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESR 254 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~ 254 (526)
.++...+.. ..|++++++.++.++. ++|++++||++++. ++++.|.+.++++++++.+.....
T Consensus 69 ~~~~~~~~~-------~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02523 69 KFVYNPDYA-------ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEW 131 (229)
T ss_pred EEEeCcchh-------hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccc
Confidence 444332211 2799999999988873 78999999999866 566777778888898887644333
Q ss_pred CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHh---hCC--CCC
Q 043870 255 ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW---HYP--EAN 329 (526)
Q Consensus 255 ~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~---~~~--~~~ 329 (526)
...++....| ++++..+.+||..+. ....+++|+|+|+++++..+.+. ..+ ...
T Consensus 132 ~~~~~~~~~~-~~~v~~~~~k~~~~~--------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~ 190 (229)
T cd02523 132 EDEYVKDLDD-AGVLLGIISKAKNLE--------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVN 190 (229)
T ss_pred cccceeeecC-ccceEeecccCCCcc--------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhccccc
Confidence 3445544333 378999999886542 24578999999999987655332 111 234
Q ss_pred ChhhchHhhhhc--CCcEEEEEecceeeecCChhhHHHhc
Q 043870 330 DFGSEVIPMATK--DFNVQAYLFNDYWEDIGTIKSFFDAN 367 (526)
Q Consensus 330 d~~~dil~~li~--~~~V~~~~~~~~w~dIgt~~d~~~An 367 (526)
++.+++++.+++ +..++.+.. ++|.||||++||.+|+
T Consensus 191 ~~~~d~i~~l~~~~~~~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 191 LYYEDALQRLISEEGVKVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred ccHHHHHHHHHhhcCeeEEEcCC-CCEEEeCCHHHHHhhC
Confidence 556789999988 344555555 8999999999999885
No 49
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.96 E-value=2.2e-28 Score=234.74 Aligned_cols=199 Identities=48% Similarity=0.843 Sum_probs=161.5
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.||||+|+|...||+|+||+|+||||+|+++++.++|+++|+|++++..+++.+|+.+...|+.. .....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~--~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLD--RKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccCC--CCCCCE
Confidence 699999999999999999999999999987899999999999999999999999999999999754433211 111224
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCc
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESR 254 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~ 254 (526)
.++...+. ..+++..||+++++.+...+++ ...++|++++||++++.++.++++.|.++++++|+++.
T Consensus 79 ~~~~~~~~---~~~~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQR---KGGDWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccC---CCCCcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 45543221 0234678999999999998853 22478999999999999999999999998888887653
Q ss_pred CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC-CCChhh
Q 043870 255 ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE-ANDFGS 333 (526)
Q Consensus 255 ~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~-~~d~~~ 333 (526)
+++|+|+|++++|..+++...+. ..++..
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 26799999999997777654222 345678
Q ss_pred chHhhhhcCCcEEEEEecceeeec
Q 043870 334 EVIPMATKDFNVQAYLFNDYWEDI 357 (526)
Q Consensus 334 dil~~li~~~~V~~~~~~~~w~dI 357 (526)
|+++.++++.++++|.++|+|.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 999999999999999999999996
No 50
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.96 E-value=3.5e-28 Score=238.16 Aligned_cols=222 Identities=19% Similarity=0.246 Sum_probs=167.9
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
.||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++++|++++.. ....++.+.+... . . .+
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~-~---~--~~ 72 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLL-A---P--NA 72 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHh-C---C--CC
Confidence 48999999999999999999999999999 99999999999999999999987432 2123332221100 0 0 12
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCc
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESR 254 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~ 254 (526)
.+...... ..||+++++.++..+. ..++|++++||++++.++.++++.|.+.+.+.++++... .
T Consensus 73 ~i~~~~~~--------~~g~~~~l~~a~~~l~-----~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~ 136 (231)
T cd04183 73 TVVELDGE--------TLGAACTVLLAADLID-----NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---S 136 (231)
T ss_pred EEEEeCCC--------CCcHHHHHHHHHhhcC-----CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---C
Confidence 22222111 2799999999998874 127899999999999999999998888777777766654 2
Q ss_pred CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHH-HHHHHHHhhC----CCCC
Q 043870 255 ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTE-VLLKVLRWHY----PEAN 329 (526)
Q Consensus 255 ~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~-~l~~ll~~~~----~~~~ 329 (526)
...|+++.+|++|+|..+.||+. .+.++++|+|+|+++ .|.++++... ....
T Consensus 137 ~~~~~~v~~d~~~~v~~~~ek~~-----------------------~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~ 193 (231)
T cd04183 137 HPRWSYVKLDENGRVIETAEKEP-----------------------ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNG 193 (231)
T ss_pred CCCeEEEEECCCCCEEEeEEcCC-----------------------CCCccEeEEEEECcHHHHHHHHHHHHhhcccccC
Confidence 34799999999999999998853 234689999999997 6655665421 1122
Q ss_pred -ChhhchHhhhhcC-CcEEEEEe-cceeeecCChhhH
Q 043870 330 -DFGSEVIPMATKD-FNVQAYLF-NDYWEDIGTIKSF 363 (526)
Q Consensus 330 -d~~~dil~~li~~-~~V~~~~~-~~~w~dIgt~~d~ 363 (526)
.+..++++.++++ .+|.+|.+ .++|.||||++||
T Consensus 194 ~~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 194 EFYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred cEEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 2347899998865 57999999 6899999999987
No 51
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.94 E-value=1.8e-26 Score=232.14 Aligned_cols=235 Identities=22% Similarity=0.352 Sum_probs=169.5
Q ss_pred eEEEEEcCCCCccccCccC-CCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhH-HHHHhhhcccCCCCccc
Q 043870 93 VASIILGGGAGTRLFPLTG-RRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQS-LNRHISRTYNLGDGMNF 169 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~-~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~-l~~~l~~~~~~~~~~~~ 169 (526)
|++||||||.||||+|||. .+||+|+|++|.+|||+++++++.+. ++++|+|++++.... +.+++.+ . .
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~--~----- 72 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G--L----- 72 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c--C-----
Confidence 6899999999999999996 79999999999339999999999998 599999999975543 4455543 1 0
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecc--cCHHHHHHHHHH---cCCcEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYR--MDYMDFVQHHIN---SGGDIS 244 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~--~dl~~ll~~h~~---~~ad~t 244 (526)
..+.++.... ..||++++..+..++.. ....+.++|++||+++. .++.++++.|.+ .++.+|
T Consensus 73 --~~~~ii~ep~---------~~gTa~ai~~a~~~~~~--~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt 139 (274)
T cd02509 73 --PEENIILEPE---------GRNTAPAIALAALYLAK--RDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVT 139 (274)
T ss_pred --CCceEEECCC---------CCCcHHHHHHHHHHHHh--cCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEE
Confidence 0133443222 26999999999988852 01346899999999876 457777765543 567788
Q ss_pred EEEEEccCCcCCCceEEEEcCCC-----CeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHH
Q 043870 245 VCCLPVDESRASDFGLMKIDETG-----RIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLK 319 (526)
Q Consensus 245 i~~~~~~~~~~~~~g~v~~d~~g-----~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ 319 (526)
+.+.+.++ .+.||++..+++. +|.+|.|||.....+.+ .....+++|+|+|+|+++.|.+
T Consensus 140 ~gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------~~~g~~~wNsGiyi~~~~~l~~ 204 (274)
T cd02509 140 FGIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEY-------------LESGNYLWNSGIFLFRAKTFLE 204 (274)
T ss_pred EEeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHH-------------hhcCCeEEECceeeeeHHHHHH
Confidence 88877643 4689999998653 89999999986532111 1113579999999999998888
Q ss_pred HHHhhCCCCC-------------C---hhhchHhh--------h-h-cCCcEEEEEecceeeecCChhhH
Q 043870 320 VLRWHYPEAN-------------D---FGSEVIPM--------A-T-KDFNVQAYLFNDYWEDIGTIKSF 363 (526)
Q Consensus 320 ll~~~~~~~~-------------d---~~~dil~~--------l-i-~~~~V~~~~~~~~w~dIgt~~d~ 363 (526)
.++...|+-. + +..+.++. + + +..++.+++.+..|.|+|+.+++
T Consensus 205 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~~ 274 (274)
T cd02509 205 ELKKHAPDIYEALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDAL 274 (274)
T ss_pred HHHHHCHHHHHHHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCcccC
Confidence 8876655311 0 11222322 1 1 24578889999999999998753
No 52
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.94 E-value=3.7e-25 Score=216.05 Aligned_cols=221 Identities=21% Similarity=0.357 Sum_probs=172.0
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.|+||++ .+||+|+|++|+ |||+|+|+++.++|+++++|++++..+.+.+++.+ + + +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~-~--------~---~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN-P--------N---V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC-C--------C---c
Confidence 69999999999995 689999999999 99999999999999999999999988888777753 1 1 3
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-e-cccCHHHHHHHHHHcCCcEEEEEEEccC
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-L-YRMDYMDFVQHHINSGGDISVCCLPVDE 252 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l-~~~dl~~ll~~h~~~~ad~ti~~~~~~~ 252 (526)
.++.... ..|+++++++++..++. ..++|++++||+ + ...++.++++.|.+.++++++.+.+.++
T Consensus 65 ~~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02540 65 EFVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED 131 (229)
T ss_pred EEEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC
Confidence 3333211 26899999999988852 247899999999 3 3556999999998877888887776654
Q ss_pred CcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC---CC
Q 043870 253 SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE---AN 329 (526)
Q Consensus 253 ~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~---~~ 329 (526)
+..|+.+..|++|+|..+.||+..... + ...+.+++|+|+|+++.|.++++..... ..
T Consensus 132 --p~~~~~~~~~~~~~v~~~~ek~~~~~~---------------~--~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~ 192 (229)
T cd02540 132 --PTGYGRIIRDGNGKVLRIVEEKDATEE---------------E--KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGE 192 (229)
T ss_pred --CCCccEEEEcCCCCEEEEEECCCCChH---------------H--HhhceEEeEEEEEEHHHHHHHHHHcccccCCCc
Confidence 567898888888999999998753210 0 0236789999999998887777764322 23
Q ss_pred ChhhchHhhhhcC-CcEEEEEecce--eeecCChhhH
Q 043870 330 DFGSEVIPMATKD-FNVQAYLFNDY--WEDIGTIKSF 363 (526)
Q Consensus 330 d~~~dil~~li~~-~~V~~~~~~~~--w~dIgt~~d~ 363 (526)
.+..++++.+++. .+|++|.++|| |+.|+|+.++
T Consensus 193 ~~~~d~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 193 YYLTDIIALAVADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EEHHHHHHHHHHCCCEEEEEEcCCcceEecCCChHhC
Confidence 4467889998874 67999999865 6778888763
No 53
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.93 E-value=1.5e-25 Score=217.79 Aligned_cols=204 Identities=17% Similarity=0.265 Sum_probs=158.3
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
++|||||||.|+||.|+|...||+|+|++|+ |||+|++++|.++|+++|+|++++..+++.+|+.+.+.+.. ... .
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~--~~~-~ 76 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSL--SSK-M 76 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccc--cCC-c
Confidence 5899999999999999999999999999999 99999999999999999999999999999999986542100 001 1
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHH--HHHcCCcEEEEEEEc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQH--HINSGGDISVCCLPV 250 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~--h~~~~ad~ti~~~~~ 250 (526)
.+.+....+. ...|++++++.+.+.+. ++|++++||++++.++.++++. +...++++++.+...
T Consensus 77 ~v~~~~~~~~-------~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~ 142 (216)
T cd02507 77 IVDVITSDLC-------ESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLA 142 (216)
T ss_pred eEEEEEccCC-------CCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEec
Confidence 1333333222 24799999999988774 7899999999999999999975 555667777766654
Q ss_pred cCCc-------CCCceEEEEcCC---CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHH
Q 043870 251 DESR-------ASDFGLMKIDET---GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL 317 (526)
Q Consensus 251 ~~~~-------~~~~g~v~~d~~---g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l 317 (526)
+... +.+++++.+|++ .++.++.+++... ..+.+..+++.-.++. ..++++.++|+|+|++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~--~~~~i~~~~l~~~~~~-~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 143 SPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDED--LELIIRKSLLSKHPNV-TIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred cCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcC--cccccCHHHHhcCCCE-EEEcCcccccEEEecCcCC
Confidence 4322 567899999987 6888898888754 2333456666655543 3478999999999998764
No 54
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.92 E-value=9.8e-24 Score=227.09 Aligned_cols=240 Identities=17% Similarity=0.314 Sum_probs=166.4
Q ss_pred eEEEEEcCCCCccccCccCC-CCccceeeCC-cchhHHHHHHHHHhcCCcEEEEEeccChh-HHHHHhhhcccCCCCccc
Q 043870 93 VASIILGGGAGTRLFPLTGR-RAKPAVPIGG-CYRLIDVPMSNCINSGIKKIYILTQFNSQ-SLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~-~pK~LlpV~g-~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~~~ 169 (526)
|.+||||||.||||+|||.. +||+|+|+.| + |||++++++|...++++++|+++.... .+.+++. .+++
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~-~~~~------ 72 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLR-EIGK------ 72 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHH-HcCC------
Confidence 57999999999999999986 8999999977 6 999999999999999999999986543 2334443 2211
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeeccc--CHHHHHHHH---HHcCCcEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRM--DYMDFVQHH---INSGGDIS 244 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~--dl~~ll~~h---~~~~ad~t 244 (526)
....++.... ..||++++..+..++... ....+.++|++||+++.. +|.++++.+ .+.++.+|
T Consensus 73 --~~~~~i~Ep~---------~~gTa~ai~~aa~~~~~~-~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvt 140 (468)
T TIGR01479 73 --LASNIILEPV---------GRNTAPAIALAALLAARR-NGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVT 140 (468)
T ss_pred --CcceEEeccc---------ccCchHHHHHHHHHHHHH-HCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEE
Confidence 0012332221 268999998877666320 012345999999986643 488887765 34455566
Q ss_pred EEEEEccCCcCCCceEEEEcC------CCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHH
Q 043870 245 VCCLPVDESRASDFGLMKIDE------TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLL 318 (526)
Q Consensus 245 i~~~~~~~~~~~~~g~v~~d~------~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~ 318 (526)
+...+.. ..+.||++..++ .++|.+|.|||.....+.+ .....++||+|+|+|+++.|.
T Consensus 141 lgi~p~~--p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~-------------l~~g~~~wNsGif~~~~~~ll 205 (468)
T TIGR01479 141 FGIVPTH--PETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAY-------------LESGDYYWNSGMFLFRASRYL 205 (468)
T ss_pred EEecCCC--CCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHH-------------HhcCCeEEEeeEEEEEHHHHH
Confidence 6665543 356899999873 2689999999986432111 111357999999999988877
Q ss_pred HHHHhhCCCC-----------------CChhhchHh---------hhhc-CCcEEEEEecceeeecCChhhHHHhc
Q 043870 319 KVLRWHYPEA-----------------NDFGSEVIP---------MATK-DFNVQAYLFNDYWEDIGTIKSFFDAN 367 (526)
Q Consensus 319 ~ll~~~~~~~-----------------~d~~~dil~---------~li~-~~~V~~~~~~~~w~dIgt~~d~~~An 367 (526)
+.++...|+- ..+..++++ .+++ ..++.+.+.+..|.|+|+++++.++-
T Consensus 206 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 206 AELKKHAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHHHCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 7776654421 011123444 2222 45789999999999999999999864
No 55
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.91 E-value=4.9e-24 Score=206.92 Aligned_cols=201 Identities=21% Similarity=0.300 Sum_probs=150.2
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChh-HHHHHhhhcccCCCCcccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQ-SLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~~~~~ 171 (526)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++|+|++++... .+.+++.+.. +.... .
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~-~~~~~---~ 75 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFP-LNLKQ---K 75 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcc-cccCc---c
Confidence 6899999999999999999999999999999 999999999999999999999997654 5666665321 11110 1
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEcc
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
..+.+.. + ....||+++++.+...+. ++|+|++||.+++.++.++++.|+..++.+|+++.+..
T Consensus 76 ~~~~~~~--~-------~~~~gt~~al~~~~~~i~-------~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 76 LDEVTIV--L-------DEDMGTADSLRHIRKKIK-------KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPP 139 (214)
T ss_pred eeEEEec--C-------CCCcChHHHHHHHHhhcC-------CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccC
Confidence 1122221 1 123799999999987763 67999999999999999999999999999999887754
Q ss_pred CCc-----------CCCceEEEEcC-CCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHH
Q 043870 252 ESR-----------ASDFGLMKIDE-TGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL 317 (526)
Q Consensus 252 ~~~-----------~~~~g~v~~d~-~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l 317 (526)
... +..+.++.+|+ ++++..+.+.... .+...++.++|.-.|+. ..++++.++++|+|++++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~--~~~~~~~~~~l~~~~~~-~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 140 VSSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDL--DEDLELRKSLLKRHPRV-TITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CcccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHh--hhhhhHHHHHHHhCCCE-EEEcCcccceEEEEEeeeC
Confidence 311 23466777775 4788877764322 22344566666654433 3478999999999998764
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.91 E-value=6.3e-23 Score=202.80 Aligned_cols=234 Identities=17% Similarity=0.217 Sum_probs=161.5
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
++.+||||+|.|+||. +|+|+|++|+ |||+|+++.|.++++++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~-~--------~- 62 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVEA-F--------G- 62 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHH-c--------C-
Confidence 5789999999999995 6999999999 999999999999999999998864 556666642 2 1
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
+.++...+. ++.|+.+... +...++. ...+.+++++||+ +++. .+.++++.|..+++++++++.+
T Consensus 63 --~~v~~~~~~-------~~~gt~~~~~-~~~~~~~---~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~ 129 (245)
T PRK05450 63 --GEVVMTSPD-------HPSGTDRIAE-AAAKLGL---ADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVP 129 (245)
T ss_pred --CEEEECCCc-------CCCchHHHHH-HHHhcCC---CCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeee
Confidence 233332222 2346655443 3333321 1236699999999 6655 4889999887776777777766
Q ss_pred ccC----CcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhC
Q 043870 250 VDE----SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHY 325 (526)
Q Consensus 250 ~~~----~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~ 325 (526)
..+ ..+..++++ +|++|+|++|.|||..+...+ ++. .+..++++++|+|+|+++++..+.+. .
T Consensus 130 ~~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~~----------~~~-~~~~~~~~~~Giy~~~~~~l~~~~~~-~ 196 (245)
T PRK05450 130 IHDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRDA----------FAD-SAPTPVYRHIGIYAYRRGFLRRFVSL-P 196 (245)
T ss_pred cCCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCCc----------ccc-ccCccccEEEEEEecCHHHHHHHHhC-C
Confidence 532 334557765 888999999999985431100 000 01135899999999999999766543 2
Q ss_pred CCCCChh--hchHhhhhcCCcEEEEEecc-eeeecCChhhHHHhchhh
Q 043870 326 PEANDFG--SEVIPMATKDFNVQAYLFND-YWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 326 ~~~~d~~--~dil~~li~~~~V~~~~~~~-~w~dIgt~~d~~~An~~l 370 (526)
+...+.. .++++.+-++.+|+++..++ +|.|||||+||.+|+..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 197 PSPLEKIESLEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred CCccccchhHHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 2211111 12234344577899999996 999999999999999754
No 57
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=4e-23 Score=196.68 Aligned_cols=227 Identities=17% Similarity=0.260 Sum_probs=150.8
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEe-ccChhHHHHHhhhcccCCCCcc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILT-QFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~-~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
++.|+|||||||.|+||+| +.||+|+.|+|+ ++|+|+|++|++.|+++++||+ +|..+.+.+++. .|++.
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~-~~~~~---- 71 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLK-KYPFN---- 71 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHh-cCCcc----
Confidence 3568999999999999998 899999999999 9999999999999999999999 888887777776 33221
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
..++...... -.+|+.||..+++.++ +.|++++||++|...+.+.+ .+.... ++.+.
T Consensus 72 -----~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~~e~l---~~a~~~-~li~d 128 (239)
T COG1213 72 -----AKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSILERL---LEAPGE-GLIVD 128 (239)
T ss_pred -----eEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHHHHHHH---HhCcCC-cEEEe
Confidence 3333322221 1356999999998887 56999999999998854333 222222 22232
Q ss_pred EccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC
Q 043870 249 PVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA 328 (526)
Q Consensus 249 ~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~ 328 (526)
..+.....+-.-...+++|++..+.++-+. .+..++|++.|+++++....+.. .+.
T Consensus 129 ~~~~~~~~~ea~kv~~e~G~i~~igK~l~e-----------------------~~~e~iGi~~l~~~i~~~~~~~~-~e~ 184 (239)
T COG1213 129 RRPRYVGVEEATKVKDEGGRIVEIGKDLTE-----------------------YDGEDIGIFILSDSIFEDTYELL-VER 184 (239)
T ss_pred ccccccccCceeEEEecCCEEehhcCCccc-----------------------ccceeeeeEEechHHHHHHHHHH-hhh
Confidence 221111111112234578999999877653 24689999999999876544332 111
Q ss_pred CCh-hhchHhhh-hcCCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 329 NDF-GSEVIPMA-TKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 329 ~d~-~~dil~~l-i~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
..+ ..++.+.. +.-..+-......+|+||+||+|+.+|...+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 185 SEYDYREVEKEAGLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred hhHHHHHHHHHhCCceEEeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 111 12222222 111111111113579999999999999987754
No 58
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.90 E-value=6.6e-22 Score=194.80 Aligned_cols=225 Identities=18% Similarity=0.289 Sum_probs=156.9
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
+.+||||+|.|+||. ||+|+|++|+ |||+|+++++.++ |+++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~--------~- 62 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-F--------G- 62 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-c--------C-
Confidence 679999999999996 7999999999 9999999999998 99999999875 556666642 2 1
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHc-CCcEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINS-GGDISVCCL 248 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~-~ad~ti~~~ 248 (526)
+.++...+. +..|+++ +..+...+. ...+.|++++||+ ++ ..++..+++.|... ++++++++.
T Consensus 63 --~~~~~~~~~-------~~~gt~~-~~~~~~~~~----~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~ 128 (239)
T cd02517 63 --GKVVMTSPD-------HPSGTDR-IAEVAEKLD----ADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLAT 128 (239)
T ss_pred --CEEEEcCcc-------cCchhHH-HHHHHHhcC----CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 333322221 1257764 555555553 1236799999998 55 44689999988766 678888887
Q ss_pred EccCCc----CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhh
Q 043870 249 PVDESR----ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWH 324 (526)
Q Consensus 249 ~~~~~~----~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~ 324 (526)
+.++.. ...|+ +..|++|+|..|.+||.....++ . +..++++++|+|+|++++|..+.+..
T Consensus 129 ~~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~~------------~--~~~~~~~~~Giy~~~~~~~~~~~~~~ 193 (239)
T cd02517 129 PISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRDS------------S--EDFPYYKHIGIYAYRRDFLLRFAALP 193 (239)
T ss_pred EcCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCCC------------C--CCCceeEEEEEEEECHHHHHHHHhCC
Confidence 765422 22333 55677899999998764321000 0 00246899999999999997665421
Q ss_pred CCCCCChh-hchHh--hhhc-CCcEEEEEecceeeecCChhhHHHhch
Q 043870 325 YPEANDFG-SEVIP--MATK-DFNVQAYLFNDYWEDIGTIKSFFDANL 368 (526)
Q Consensus 325 ~~~~~d~~-~dil~--~li~-~~~V~~~~~~~~w~dIgt~~d~~~An~ 368 (526)
+ ..+. .+.++ .+++ +.++.++..+++|.||||++||.+|+.
T Consensus 194 -~--~~~~~~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 194 -P--SPLEQIESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred -C--chhhhhhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 1 1221 22332 3344 566999999999999999999999985
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.88 E-value=5e-21 Score=188.41 Aligned_cols=225 Identities=17% Similarity=0.276 Sum_probs=153.3
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
++.|||||+|.|+||. +|+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.+ ++
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~-~~-------- 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA-FG-------- 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH-cC--------
Confidence 4789999999999996 5999999999 9999999999998 89999999875 556666652 21
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCC-cEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGG-DISVCC 247 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~a-d~ti~~ 247 (526)
+.++...+. +..|++ .+..+...++ .+.|+++.||+ +...++.++++.|.+.+. ++++++
T Consensus 64 ---~~v~~~~~~-------~~~g~~-~~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~ 126 (238)
T PRK13368 64 ---GKVVMTSDD-------HLSGTD-RLAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLC 126 (238)
T ss_pred ---CeEEecCcc-------CCCccH-HHHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEE
Confidence 222222111 124565 4555554443 37899999997 445669999998876543 555566
Q ss_pred EEccCC-c---CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 248 LPVDES-R---ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 248 ~~~~~~-~---~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
.+.+.. + +..+++ ..+++|++..|.|+|..... ++. ...++.++|+|+|++++|..+ +.
T Consensus 127 ~~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~--------------~~~-~~~~~~n~giy~~~~~~l~~~-~~ 189 (238)
T PRK13368 127 APISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRR--------------DGE-SARYLKHVGIYAFRRDVLQQF-SQ 189 (238)
T ss_pred EEcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCC--------------CCC-CCceeEEEEEEEeCHHHHHHH-Hc
Confidence 555431 1 334444 44667999999976532100 000 024589999999999999753 33
Q ss_pred hCCCCC-Chhh-chHhhhh-cCCcEEEEEecceeeecCChhhHHHhchh
Q 043870 324 HYPEAN-DFGS-EVIPMAT-KDFNVQAYLFNDYWEDIGTIKSFFDANLS 369 (526)
Q Consensus 324 ~~~~~~-d~~~-dil~~li-~~~~V~~~~~~~~w~dIgt~~d~~~An~~ 369 (526)
..+... ++.. +++ .++ .+.+++++..+++|.||||++||..|+..
T Consensus 190 ~~~~~~~~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 190 LPETPLEQIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred CCCChhhhhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 111111 1222 555 444 56679999988999999999999999864
No 60
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=2.1e-21 Score=177.67 Aligned_cols=219 Identities=15% Similarity=0.206 Sum_probs=153.7
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|+|||||||.||||.|||...||+|+.|.|+ |||+++|+.|.++||++|+||+||.+++ .+||.++|+..
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~-FeYLkdKy~vt-------- 70 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQ-FEYLKDKYDVT-------- 70 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHH-HHHHHHhcCeE--------
Confidence 6899999999999999999999999999999 9999999999999999999999999988 68999988421
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccC
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDE 252 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~ 252 (526)
+.....+.. -++..+++.|++.+++ ..|+.+|.+...++- ..+ ...+-. .++....
T Consensus 71 -LvyN~kY~~---------yNn~ySlyla~d~l~n--------tYiidsDnyl~kNif---~~~-~~~S~Y-fav~~~~- 126 (231)
T COG4750 71 -LVYNPKYRE---------YNNIYSLYLARDFLNN--------TYIIDSDNYLTKNIF---LTK-ESHSKY-FAVYRSG- 126 (231)
T ss_pred -EEeCchHHh---------hhhHHHHHHHHHHhcc--------cEEeccchHhhhhhh---hcC-cccceE-EEEEecC-
Confidence 223333333 4688999999999975 899999998877741 111 111211 1122211
Q ss_pred CcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHH---HHHHHHhhCCC--
Q 043870 253 SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEV---LLKVLRWHYPE-- 327 (526)
Q Consensus 253 ~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~---l~~ll~~~~~~-- 327 (526)
..+--++..+.+|+|+.+.---. .....+|+-.|++.. +..+++..+-.
T Consensus 127 --~tnEw~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e 180 (231)
T COG4750 127 --KTNEWLLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLE 180 (231)
T ss_pred --CCceeEEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCch
Confidence 22333566788899988764322 346788999999763 33455554321
Q ss_pred -CCChhhchHhhhhcCCcEEEEEec-ceeeecCChhhHHHhchhhc
Q 043870 328 -ANDFGSEVIPMATKDFNVQAYLFN-DYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 328 -~~d~~~dil~~li~~~~V~~~~~~-~~w~dIgt~~d~~~An~~ll 371 (526)
..-+.+++.-.-++...+++-..+ +--+++++.++|......++
T Consensus 181 ~~k~yWd~v~~~ni~~l~m~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 181 NRKLYWDTVPMENIKELDMYIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred hhhHHHHHHHHHHHHHHhHhHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 112345555555665555554443 45778999999988766543
No 61
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.85 E-value=3.6e-20 Score=198.13 Aligned_cols=244 Identities=17% Similarity=0.306 Sum_probs=164.4
Q ss_pred CCceEEEEEcCCCCccccCccCC-CCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChh-HHHHHhhhcccCCCCc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGR-RAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQ-SLNRHISRTYNLGDGM 167 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~-~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~ 167 (526)
.++|.+||||||.||||+|+|.. .||+|+|+.|..|||+++++++...++.+.+||++.... .+.+++.. . ..
T Consensus 3 ~~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~-~--~~-- 77 (478)
T PRK15460 3 QSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQ-L--NK-- 77 (478)
T ss_pred CCceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHh-c--CC--
Confidence 44589999999999999999997 699999996634999999999999888888888886554 33344432 1 10
Q ss_pred ccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCC-CCeEEEEcCCeecccC--HHHHHHHHH---HcCC
Q 043870 168 NFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRN-IENILILSGDHLYRMD--YMDFVQHHI---NSGG 241 (526)
Q Consensus 168 ~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~-~e~~lil~gD~l~~~d--l~~ll~~h~---~~~a 241 (526)
.. ..++.... ..+|+.++..+..++.. +... ..-++++++|+++... |.+.++... +.+.
T Consensus 78 --~~--~~ii~EP~---------~rnTApaialaa~~~~~-~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~ 143 (478)
T PRK15460 78 --LT--ENIILEPA---------GRNTAPAIALAALAAKR-HSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGK 143 (478)
T ss_pred --cc--ccEEecCC---------CCChHHHHHHHHHHHHH-hcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCC
Confidence 00 12232211 15799998877766643 0011 3568899999976553 555554432 2355
Q ss_pred cEEEEEEEccCCcCCCceEEEEcCC---------CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEE
Q 043870 242 DISVCCLPVDESRASDFGLMKIDET---------GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLF 312 (526)
Q Consensus 242 d~ti~~~~~~~~~~~~~g~v~~d~~---------g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif 312 (526)
-+|+...|... .+.||++..++. .+|.+|.|||+....+.+ ...-.|+||+|+|+|
T Consensus 144 lvt~GI~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~y-------------l~~G~y~WNsGiF~~ 208 (478)
T PRK15460 144 LVTFGIVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAY-------------VASGEYYWNSGMFLF 208 (478)
T ss_pred EEEEecCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHH-------------HHcCCEEEecceehe
Confidence 56666655433 568999997642 269999999997654333 122458999999999
Q ss_pred cHHHHHHHHHhhCCCC--------------CCh--h-hchHh--------hhhc--CCcEEEEEecceeeecCChhhHHH
Q 043870 313 KTEVLLKVLRWHYPEA--------------NDF--G-SEVIP--------MATK--DFNVQAYLFNDYWEDIGTIKSFFD 365 (526)
Q Consensus 313 ~~~~l~~ll~~~~~~~--------------~d~--~-~dil~--------~li~--~~~V~~~~~~~~w~dIgt~~d~~~ 365 (526)
+.+.+...++.+.|+- .++ . .+.++ +++- ..++.+.+.+..|.|+|+..++.+
T Consensus 209 ~a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~ 288 (478)
T PRK15460 209 RAGRYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWE 288 (478)
T ss_pred eHHHHHHHHHHHCHHHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHH
Confidence 9998877777655421 010 0 11222 2221 346888888888999999999988
Q ss_pred hc
Q 043870 366 AN 367 (526)
Q Consensus 366 An 367 (526)
.-
T Consensus 289 ~~ 290 (478)
T PRK15460 289 IS 290 (478)
T ss_pred hh
Confidence 63
No 62
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=5.8e-19 Score=174.85 Aligned_cols=245 Identities=20% Similarity=0.348 Sum_probs=166.8
Q ss_pred ceEEEEEcCCCCccccCccC-CCCccceeeCCcchhHHHHHHHHHh-cCCcEEEEEeccChh-HHHHHhhhcccCCCCcc
Q 043870 92 AVASIILGGGAGTRLFPLTG-RRAKPAVPIGGCYRLIDVPMSNCIN-SGIKKIYILTQFNSQ-SLNRHISRTYNLGDGMN 168 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~-~~pK~LlpV~g~~pLI~~~l~~l~~-~gi~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~~ 168 (526)
+|.+||||||.||||+||++ .+||++|++.|...|++.+++++.. .++++++|||+.... .+.+.+.+. ..+.
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~---~~~~- 76 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEI---DIEN- 76 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhh---hhcc-
Confidence 37899999999999999985 6699999996633999999999998 678999999996554 333444421 0000
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC--HHHHHHHHH---HcCCcE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD--YMDFVQHHI---NSGGDI 243 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d--l~~ll~~h~---~~~ad~ 243 (526)
. .+ .++.+.. ++|+.|+..+.-.+.. .....-++++++||+.... +.+.++... +.+.-+
T Consensus 77 ~-~~--illEP~g----------RnTApAIA~aa~~~~~--~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lV 141 (333)
T COG0836 77 A-AG--IILEPEG----------RNTAPAIALAALSATA--EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIV 141 (333)
T ss_pred c-cc--eEeccCC----------CCcHHHHHHHHHHHHH--hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEE
Confidence 0 01 1222211 5799998887765542 1223458999999977654 777766543 345556
Q ss_pred EEEEEEccCCcCCCceEEEEcCC------CCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHH
Q 043870 244 SVCCLPVDESRASDFGLMKIDET------GRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVL 317 (526)
Q Consensus 244 ti~~~~~~~~~~~~~g~v~~d~~------g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l 317 (526)
|+...|.. ..+.||+++..+. -+|.+|.|||+....+.+. ..-.|+||+|+++|+...+
T Consensus 142 TfGI~Pt~--PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv-------------~sG~y~WNSGmF~Fra~~~ 206 (333)
T COG0836 142 TFGIPPTR--PETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYV-------------ESGEYLWNSGMFLFRASVF 206 (333)
T ss_pred EEecCCCC--CccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHH-------------HcCceEeeccceEEEHHHH
Confidence 66665543 3568999998542 3699999999976543332 1245999999999999988
Q ss_pred HHHHHhhCCCC-------------CC--------hh---hchHhhhh--cCCcEEEEEecceeeecCChhhHHHhchhh
Q 043870 318 LKVLRWHYPEA-------------ND--------FG---SEVIPMAT--KDFNVQAYLFNDYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 318 ~~ll~~~~~~~-------------~d--------~~---~dil~~li--~~~~V~~~~~~~~w~dIgt~~d~~~An~~l 370 (526)
.+.++.+.|+- .+ |. ..-+.+++ +..++.+.+.+-.|-|+|+..++.+....-
T Consensus 207 l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~~d 285 (333)
T COG0836 207 LEELKKHQPDIYCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLDKD 285 (333)
T ss_pred HHHHHhhCcHHHHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhhcC
Confidence 88777765531 00 10 11122222 246788888898999999999998875543
No 63
>PLN02917 CMP-KDO synthetase
Probab=99.78 E-value=2.8e-17 Score=166.75 Aligned_cols=236 Identities=15% Similarity=0.181 Sum_probs=156.0
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
.+++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+.+ +++++.+.+.+++.+ ++
T Consensus 45 ~~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~V-VV~~~~e~I~~~~~~-~~------- 108 (293)
T PLN02917 45 RSRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHI-VVATDDERIAECCRG-FG------- 108 (293)
T ss_pred CCcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEE-EEECChHHHHHHHHH-cC-------
Confidence 456789999999999996 5999999999 9999999999987654443 334566677776642 21
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEE--
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISV-- 245 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti-- 245 (526)
++++...+. ...||.++ ..+...++ ...+.++++.||+ +... .+.++++.+.+. +++++
T Consensus 109 ----v~vi~~~~~-------~~~GT~~~-~~a~~~l~----~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t 171 (293)
T PLN02917 109 ----ADVIMTSES-------CRNGTERC-NEALKKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFST 171 (293)
T ss_pred ----CEEEeCCcc-------cCCchHHH-HHHHHhcc----CCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEE
Confidence 223322111 12466665 56666664 1247899999999 5555 488898877553 34333
Q ss_pred EEEEccCCcCCCceEEE--EcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 246 CCLPVDESRASDFGLMK--IDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 246 ~~~~~~~~~~~~~g~v~--~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
++.+...+++.+||.++ .|++|++..|..++-.+...+ .+.+...+..++|+|.|+.+.|. .+..
T Consensus 172 ~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~------------~~~~~~i~~~n~Giy~f~~~~L~-~l~~ 238 (293)
T PLN02917 172 AVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSG------------KVNPQFPYLLHLGIQSYDAKFLK-IYPE 238 (293)
T ss_pred EeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCc------------ccccccceEEEEEEEEeCHHHHH-HHHc
Confidence 33344445577899886 687899887775533211000 00112447889999999999998 4444
Q ss_pred hCCC---CCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 324 HYPE---ANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 324 ~~~~---~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
..++ ...+.++++ .+-.+.+|.++..+.....|||++|+.+|+..+.+
T Consensus 239 l~~~n~e~e~yLtdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 239 LPPTPLQLEEDLEQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred CCCCcccchhccHHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 3222 223344554 33346788888776667799999999999998744
No 64
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.66 E-value=4e-15 Score=144.44 Aligned_cols=210 Identities=17% Similarity=0.205 Sum_probs=141.4
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccCh-hHHHHHhhhcccCCCCcccCCC
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNS-QSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~-~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|||||||.|+||+ ...||+|++++|+ |||+|+++++..+ ++++|+|++++.. +.+.+++... .
T Consensus 2 aiIlAaG~s~R~~---~~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-----------~ 66 (217)
T TIGR00453 2 AVIPAAGRGTRFG---SGVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-----------A 66 (217)
T ss_pred EEEEcCcccccCC---CCCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-----------C
Confidence 7999999999997 3479999999999 9999999999998 7999999998764 2333333210 0
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEEEc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~~~ 250 (526)
.+.++. .. .+..++++.++..++ ..+.++++.||+ +++.+ +..+++.+.+. +.++++.+.
T Consensus 67 ~~~~~~--~~---------~~~~~sl~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~ 128 (217)
T TIGR00453 67 VPKIVA--GG---------DTRQDSVRNGLKALK-----DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPV 128 (217)
T ss_pred cEEEeC--CC---------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEec
Confidence 122221 11 135688888887661 237899999999 66555 78888877653 344455544
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCC
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAND 330 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d 330 (526)
. .++...|++|.+..+.++.. -+...+ .|.|+...|..+++........
T Consensus 129 ~------~~v~~~~~~g~~~~~~~r~~------------------------~~~~~~-p~~f~~~~l~~~~~~~~~~~~~ 177 (217)
T TIGR00453 129 A------DTLKRVEADGFIVETVDREG------------------------LWAAQT-PQAFRTELLKKALARAKEEGFE 177 (217)
T ss_pred c------ceEEEEcCCCceeecCChHH------------------------eEEEeC-CCcccHHHHHHHHHHHHhcCCC
Confidence 2 34555566777887777422 123344 5999999988777543222111
Q ss_pred hhhchHhhhhc-CCcEEEEEecceeeecCChhhHHHhchh
Q 043870 331 FGSEVIPMATK-DFNVQAYLFNDYWEDIGTIKSFFDANLS 369 (526)
Q Consensus 331 ~~~dil~~li~-~~~V~~~~~~~~w~dIgt~~d~~~An~~ 369 (526)
..|....+.. +.++..+..+..+++|+|++||..|+..
T Consensus 178 -~~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 178 -ITDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred -CCcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHHh
Confidence 1232332222 5678877777777899999999988754
No 65
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.65 E-value=1.6e-14 Score=142.65 Aligned_cols=228 Identities=16% Similarity=0.210 Sum_probs=147.2
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
+||+|+|.|+||. +|+|++++|+ |||+|+++++..+++++|+|++.. +.+.+++. .+ + +
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~-~~--------g---~ 60 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQ-KF--------G---I 60 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHH-Hc--------C---C
Confidence 7999999999995 7999999999 999999999999899999999864 34455543 22 1 2
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEEEccC
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCLPVDE 252 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~~~~~ 252 (526)
.++...+.. ..|+ +.+..+...+.. ...+.++++.||. +...+ +.++++.+.+.++++++++.+..+
T Consensus 61 ~~v~~~~~~-------~~Gt-~r~~~~~~~l~~---~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d 129 (238)
T TIGR00466 61 EVCMTSKHH-------NSGT-ERLAEVVEKLAL---KDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHD 129 (238)
T ss_pred EEEEeCCCC-------CChh-HHHHHHHHHhCC---CCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 222211110 1233 334444433320 1236789999999 66665 788888876656777777777654
Q ss_pred CcC---CCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC-
Q 043870 253 SRA---SDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA- 328 (526)
Q Consensus 253 ~~~---~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~- 328 (526)
... .....+..|.+|++..|...+.......+ ....+|+. ..++...|+|.|++++|..+..+. +..
T Consensus 130 ~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~-----~~~~tpq~---~~~~~h~Giy~~~~~~L~~~~~~~-~~~l 200 (238)
T TIGR00466 130 AEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFF-----AKRQTPVG---DNLLRHIGIYGYRAGFIEEYVAWK-PCVL 200 (238)
T ss_pred HHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcc-----cccccccc---cceeEEEEEEeCCHHHHHHHHhCC-CCcc
Confidence 211 11333444778888888766442211000 01112221 236778999999999998887652 221
Q ss_pred CChh-hchHhhhhcCCcEEEEEecce-eeecCChhhH
Q 043870 329 NDFG-SEVIPMATKDFNVQAYLFNDY-WEDIGTIKSF 363 (526)
Q Consensus 329 ~d~~-~dil~~li~~~~V~~~~~~~~-w~dIgt~~d~ 363 (526)
...+ -|-|+.+-.+++|++...+.. -..||||+|+
T Consensus 201 e~~e~leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 201 EEIEKLEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred cccchhHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 1121 256777777899999888765 4599999997
No 66
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.65 E-value=7e-15 Score=143.85 Aligned_cols=218 Identities=17% Similarity=0.187 Sum_probs=142.0
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccCh-hHHHHHhhhcccCCCCcc
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNS-QSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~-~~l~~~l~~~~~~~~~~~ 168 (526)
+++.+||||||.|+||+ ...||+|++++|+ |||+|+++++..++ +++|+|++++.. +.+.+++....
T Consensus 2 ~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~------- 70 (227)
T PRK00155 2 MMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKD------- 70 (227)
T ss_pred CceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhccC-------
Confidence 46789999999999996 4579999999999 99999999999865 899999998765 33322221100
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVC 246 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~ 246 (526)
..+.++. .. .+..++++.++..+.+ .+.++++.||+ ++..+ +.++++.+.+.+ .++.
T Consensus 71 ---~~~~~~~--~~---------~~~~~sv~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~ 129 (227)
T PRK00155 71 ---PKVTVVA--GG---------AERQDSVLNGLQALPD-----DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAIL 129 (227)
T ss_pred ---CceEEeC--Cc---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEE
Confidence 0122221 11 2468999999877731 36899999999 56555 888998876653 3444
Q ss_pred EEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC
Q 043870 247 CLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326 (526)
Q Consensus 247 ~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~ 326 (526)
+.+..+ .+. ..+++|.+..+.++.. -+... +.|.|+.+.|..+++....
T Consensus 130 ~~~~~~----~~~--~v~~~g~~~~~~~r~~------------------------~~~~~-~p~~f~~~~l~~~~~~~~~ 178 (227)
T PRK00155 130 AVPVKD----TIK--RSDDGGGIVDTPDRSG------------------------LWAAQ-TPQGFRIELLREALARALA 178 (227)
T ss_pred EEeccc----cEE--EEcCCCceeecCChHH------------------------heeee-CCccchHHHHHHHHHHHHh
Confidence 444432 122 2255666665532111 11222 3799999998877765321
Q ss_pred CCCChhhchHhhhh-cCCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 327 EANDFGSEVIPMAT-KDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 327 ~~~d~~~dil~~li-~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
...+..+....+. .+.++..+..+..++||+|++||..|+..+.+
T Consensus 179 -~~~~~~d~~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 179 -EGKTITDDASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred -cCCCcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 1122222222222 24567777766678899999999999886643
No 67
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.62 E-value=1.8e-14 Score=139.68 Aligned_cols=213 Identities=18% Similarity=0.269 Sum_probs=142.1
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
.+||||||.|+||+. ..||+|+|++|+ |||+|+++++..++ +++|+|++++........+. .+... .
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~-~~~~~-------~ 69 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELA-KYGLS-------K 69 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHH-hcccC-------C
Confidence 589999999999984 379999999999 99999999999976 99999999987655444331 11111 1
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEEEc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCLPV 250 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~~~ 250 (526)
.+.++.. . .+..++++.++..++. ...+.++++.||+ +++.+ +.++++.+...++ .+.+.+.
T Consensus 70 ~~~~~~~--~---------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~ 133 (218)
T cd02516 70 VVKIVEG--G---------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPV 133 (218)
T ss_pred CeEEECC--c---------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEec
Confidence 1333321 1 2467889999887741 1347899999999 66655 8888888765443 3444443
Q ss_pred cCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCC
Q 043870 251 DESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAND 330 (526)
Q Consensus 251 ~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d 330 (526)
.+ ++...|++|.+.++.+..+ -....++ ++|+.+.|.+++...... ..
T Consensus 134 ~~------~~~~~~~~g~~~~~~~r~~------------------------~~~~~~P-~~f~~~~~~~~~~~~~~~-~~ 181 (218)
T cd02516 134 TD------TIKRVDDDGVVVETLDREK------------------------LWAAQTP-QAFRLDLLLKAHRQASEE-GE 181 (218)
T ss_pred cc------cEEEecCCCceeecCChHH------------------------hhhhcCC-CcccHHHHHHHHHHHHhc-CC
Confidence 22 2344577888988877432 2345566 999999998888664322 11
Q ss_pred hhhchHhhhhc-CCcEEEEEecceeeecCChhhHHHh
Q 043870 331 FGSEVIPMATK-DFNVQAYLFNDYWEDIGTIKSFFDA 366 (526)
Q Consensus 331 ~~~dil~~li~-~~~V~~~~~~~~w~dIgt~~d~~~A 366 (526)
+..|....+.+ ..++..+..+..-+||+|++||..|
T Consensus 182 ~~td~~~~~~~~~~~v~~v~~~~~~~~i~t~~dl~~~ 218 (218)
T cd02516 182 EFTDDASLVEAAGGKVALVEGSEDNIKITTPEDLALA 218 (218)
T ss_pred CcCcHHHHHHHcCCCeEEEecCcccccCCCHHHHhhC
Confidence 22333333322 3467766655555699999999653
No 68
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.60 E-value=3.1e-14 Score=134.58 Aligned_cols=120 Identities=14% Similarity=0.252 Sum_probs=90.0
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
+||||||.|+||+ .||+|+|++|+ |||+|+++++.++++++|+|++++..+.+.+++.+.+ + +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~~--------~---v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANHS--------N---I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccCC--------C---e
Confidence 7999999999998 59999999999 9999999999999999999999988766555443221 1 4
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEE
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDIS 244 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~t 244 (526)
.++.... +..|+.++++.++.+ . ...+.+++++||+ ++.. .+..+++.+...+.+++
T Consensus 65 ~~v~~~~--------~~~g~~~si~~~l~~-~----~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 123 (188)
T TIGR03310 65 TLVHNPQ--------YAEGQSSSIKLGLEL-P----VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIV 123 (188)
T ss_pred EEEECcC--------hhcCHHHHHHHHhcC-C----CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEE
Confidence 4443221 225889999988762 1 1247899999999 5544 47888887766555443
No 69
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.59 E-value=5.5e-14 Score=147.11 Aligned_cols=208 Identities=16% Similarity=0.191 Sum_probs=139.9
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
|+++.+||||||.|+||. ...||++++++|+ |||+|+++.+.+++ +++|+|++++......+.+.+.+
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~------- 71 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEI------- 71 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccC-------
Confidence 566899999999999995 4579999999999 99999999999987 79999999876654443332111
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEE
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVC 246 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~ 246 (526)
..+.++. .. .+..++++.++..++. +.+++..||. +++.+ +..+++.+.+ .+.++.
T Consensus 72 ---~~v~~v~--gG---------~~r~~SV~~gL~~l~~------d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~ 129 (378)
T PRK09382 72 ---KFVTLVT--GG---------ATRQESVRNALEALDS------EYVLIHDAARPFVPKELIDRLIEALDK--ADCVLP 129 (378)
T ss_pred ---CeEEEeC--CC---------chHHHHHHHHHHhcCC------CeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEE
Confidence 0122221 11 3467899999887753 7799999998 66665 6777776544 356777
Q ss_pred EEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCC
Q 043870 247 CLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYP 326 (526)
Q Consensus 247 ~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~ 326 (526)
+.++.+ +..|+...+|. .++..+ ++|... +.+.+.... .
T Consensus 130 ~~pv~D--tik~~~~tldR-~~l~~~-QTPQ~f---------------------------------~~~~l~~a~----~ 168 (378)
T PRK09382 130 ALPVAD--TLKRANETVDR-EGLKLI-QTPQLS---------------------------------RTKTLKAAA----D 168 (378)
T ss_pred EEEecc--CcEEeeeEcCc-ccEEEE-ECCCCC---------------------------------CHHHHHHHH----h
Confidence 777765 44565444442 344433 555532 122222211 1
Q ss_pred CCCChhhchHhhhh-cCCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 327 EANDFGSEVIPMAT-KDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 327 ~~~d~~~dil~~li-~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
...++ .|..+.+. .+.+|..+..+..|.+|+||+||..|+..+..
T Consensus 169 ~~~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 169 GRGDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred CCCCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 11222 33344433 36789998888999999999999999987643
No 70
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.58 E-value=1.9e-14 Score=132.75 Aligned_cols=120 Identities=23% Similarity=0.355 Sum_probs=93.8
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeE
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFV 174 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v 174 (526)
|||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++ +++.+++.+. + +
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~---------~---~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY---------G---I 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT---------T---S
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc---------C---c
Confidence 7999999999998 59999999999 999999999999999999999998 3455555321 1 4
Q ss_pred EEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEE
Q 043870 175 EVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 175 ~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~ 247 (526)
.++.+... ..|.+++++.+...+. ..+.|++++||+ +++.+ +..+++.+.+.++++++..
T Consensus 61 ~~v~~~~~--------~~G~~~sl~~a~~~~~-----~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 61 KVVVDPEP--------GQGPLASLLAALSQLP-----SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp EEEE-STS--------SCSHHHHHHHHHHTST-----TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred eEEEeccc--------cCChHHHHHHHHHhcc-----cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 44444322 2699999999988772 248999999999 44554 8889998887777766544
No 71
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.57 E-value=8.5e-15 Score=143.44 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=32.2
Q ss_pred ChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcCCC
Q 043870 330 DFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTDKP 374 (526)
Q Consensus 330 d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~~~ 374 (526)
+| .|.++.++..+ ++..++||.|+ ++|++||+.++...
T Consensus 29 ~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~ 66 (231)
T TIGR03532 29 DF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDY 66 (231)
T ss_pred cc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcce
Confidence 44 57888888766 88889999999 99999999998764
No 72
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.56 E-value=1.9e-13 Score=134.07 Aligned_cols=219 Identities=16% Similarity=0.162 Sum_probs=138.6
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhH-HHHHhhhcccCCCCccc
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQS-LNRHISRTYNLGDGMNF 169 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~-l~~~l~~~~~~~~~~~~ 169 (526)
.+.+||||||.|+||+ ...||+|++++|+ |||+|+++++..+ .+++|+|+++..... +.+++. .|++.
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~~~----- 71 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMK-QLNVA----- 71 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHH-hcCcC-----
Confidence 3689999999999997 4579999999999 9999999999976 489999999865422 223332 23221
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~ 247 (526)
...++++.. . .+..++++.++..+++ .+.++++.||. +...+ +.++++.+.+.++ .+.+
T Consensus 72 -~~~~~~v~~--g---------~~r~~sv~~gl~~~~~-----~d~vli~~~d~P~i~~~~i~~li~~~~~~~~--~~~~ 132 (230)
T PRK13385 72 -DQRVEVVKG--G---------TERQESVAAGLDRIGN-----EDVILVHDGARPFLTQDIIDRLLEGVAKYGA--AICA 132 (230)
T ss_pred -CCceEEcCC--C---------chHHHHHHHHHHhccC-----CCeEEEccCCCCCCCHHHHHHHHHHHhhCCc--EEEE
Confidence 111333321 1 2345889998877642 25678889999 77666 7888887766544 3333
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.+..+ .++...+|.+....++. . ...--+.|.|+.+.|....+.....
T Consensus 133 ~~~~d-------ti~~~~~~~~~~~i~r~---~----------------------~~~~qtpq~f~~~~l~~~~~~~~~~ 180 (230)
T PRK13385 133 VEVKD-------TVKRVKDKQVIETVDRN---E----------------------LWQGQTPQAFELKILQKAHRLASEQ 180 (230)
T ss_pred Eeccc-------eEEEEcCCeeEeccCHH---H----------------------HhhhcCCceeeHHHHHHHHHHHHhc
Confidence 33322 12222345544333211 0 1112236889988887766542212
Q ss_pred CCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhc
Q 043870 328 ANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 328 ~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll 371 (526)
...+.++..-..-.+..|..+.-+...+.|+|++|+..|+..+.
T Consensus 181 ~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 181 QFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred CCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 22222222222224678888887888899999999999987663
No 73
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.55 E-value=2.8e-13 Score=131.64 Aligned_cols=216 Identities=19% Similarity=0.241 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
+.|||||+|.|+||. .|+|++++|+ |||+|+++.+.+++ +++|+|++. .+.+.+++.+ +..
T Consensus 2 ~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~-~~~-------- 63 (223)
T cd02513 2 ILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARK-YGA-------- 63 (223)
T ss_pred eEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHH-hCC--------
Confidence 679999999999995 5999999999 99999999999987 788888764 3444555432 211
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~~ad~ti~~~~ 249 (526)
. +.++...... .-..|+.++++.++..++.. ....+.++++.||+ +. ...+.++++.+...+++.++.+.+
T Consensus 64 ~-~~~~~~~~~~-----~~~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~ 136 (223)
T cd02513 64 E-VPFLRPAELA-----TDTASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE 136 (223)
T ss_pred C-ceeeCChHHC-----CCCCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 0 1111111100 00147889999998877520 01237899999999 44 445899999988777787777766
Q ss_pred ccCCcCCCceEEEEcCCC-CeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCC
Q 043870 250 VDESRASDFGLMKIDETG-RIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEA 328 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g-~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~ 328 (526)
..+ ...++... +++| .+..+.++..... ++ ....+..++|+|+++++.+.+.
T Consensus 137 ~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~---------------q~-~~~~~~~n~~~y~~~~~~~~~~-------- 189 (223)
T cd02513 137 FHR--FPWRALGL-DDNGLEPVNYPEDKRTRR---------------QD-LPPAYHENGAIYIAKREALLES-------- 189 (223)
T ss_pred cCc--CcHHheee-ccCCceeccCcccccCCc---------------CC-ChhHeeECCEEEEEEHHHHHhc--------
Confidence 543 22233322 2222 2222222111000 00 0134567889999999977531
Q ss_pred CChhhchHhhhhcCCcEEEEEecc-eeeecCChhhHHHhchh
Q 043870 329 NDFGSEVIPMATKDFNVQAYLFND-YWEDIGTIKSFFDANLS 369 (526)
Q Consensus 329 ~d~~~dil~~li~~~~V~~~~~~~-~w~dIgt~~d~~~An~~ 369 (526)
..+ -+.++..|.... .-+||+|++||..|+..
T Consensus 190 ~~~---------~g~~~~~~~~~~~~~~dI~~~~D~~~ae~~ 222 (223)
T cd02513 190 NSF---------FGGKTGPYEMPRERSIDIDTEEDFELAEAL 222 (223)
T ss_pred CCc---------cCCCeEEEEeCccceeCCCCHHHHHHHHHh
Confidence 011 156777777765 57999999999998754
No 74
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.54 E-value=8.3e-14 Score=131.92 Aligned_cols=124 Identities=22% Similarity=0.230 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|.|||||||+|+||++ .||+|+|++|+ |||+|+++++..+++++|+|+++++.+.+..|+.+.+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999985 79999999999 9999999999999999999999988878777876432
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ec-ccCHHHHHHHHHHcCCcEEEEEE
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LY-RMDYMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~-~~dl~~ll~~h~~~~ad~ti~~~ 248 (526)
..+.. +. -.|...++..++..+. ..++|++++||+ +. ...+..+++.+...+.+....+.
T Consensus 65 -~~~~~---~~-------g~G~~~~l~~al~~~~-----~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 126 (183)
T TIGR00454 65 -KDYKN---AS-------GKGYIEDLNECIGELY-----FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMI 126 (183)
T ss_pred -cEEEe---cC-------CCCHHHHHHHHhhccc-----CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEe
Confidence 11211 11 1578888888876542 237899999999 43 44588899887766555444443
No 75
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.50 E-value=5.5e-13 Score=125.55 Aligned_cols=114 Identities=17% Similarity=0.276 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
+.+||||||.|+||+ .||+|++++|+ |||+|+++.+... +++|+|++++..+. .. .+ +
T Consensus 1 ~~~iILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~----~~-~~--------~-- 58 (181)
T cd02503 1 ITGVILAGGKSRRMG-----GDKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER----YA-LL--------G-- 58 (181)
T ss_pred CcEEEECCCccccCC-----CCceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH----Hh-hc--------C--
Confidence 468999999999998 39999999999 9999999999988 99999999987543 11 11 1
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEE
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDIS 244 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~t 244 (526)
+.++.+.. |..|..++++.++..++. +.+++++||+ +.+.+ +..+++.+ ..+.+++
T Consensus 59 -~~~v~~~~--------~~~G~~~si~~~l~~~~~------~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~ 116 (181)
T cd02503 59 -VPVIPDEP--------PGKGPLAGILAALRAAPA------DWVLVLACDMPFLPPELLERLLAAA-EEGADAV 116 (181)
T ss_pred -CcEeeCCC--------CCCCCHHHHHHHHHhcCC------CeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCEE
Confidence 23333221 236899999999877643 7899999999 55555 67777765 3344433
No 76
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.48 E-value=1.7e-12 Score=123.82 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=83.5
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+++|.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+. .++++|+|+++...+. +. .+
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~----~~-~~-------- 61 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLAR----YA-AF-------- 61 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHH----HH-hc--------
Confidence 346899999999999995 269999999999 99999999998 7799999998764322 11 11
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcC
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSG 240 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ 240 (526)
+ +.++..... +..|...+++.++...+ .+.+++++||+ +++.+ +..+++.+.+.+
T Consensus 62 ~---~~~v~~~~~-------~~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~ 118 (193)
T PRK00317 62 G---LPVIPDSLA-------DFPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAGKDD 118 (193)
T ss_pred C---CcEEeCCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhhcCC
Confidence 0 222322111 12578899998877543 37899999999 66665 677777654333
No 77
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.48 E-value=3e-12 Score=127.14 Aligned_cols=220 Identities=15% Similarity=0.155 Sum_probs=133.9
Q ss_pred CCCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhHHHHHhhhcccCCCCc
Q 043870 89 DPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQSLNRHISRTYNLGDGM 167 (526)
Q Consensus 89 ~~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~ 167 (526)
.++.+.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.+. ++++|+||+++......+.+.+.+
T Consensus 21 ~~~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~------ 90 (252)
T PLN02728 21 KEKSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI------ 90 (252)
T ss_pred ccCceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc------
Confidence 3556899999999999997 4579999999999 9999999999984 899999999976543333322222
Q ss_pred ccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCC--e-ecccC-HHHHHHHHHHcCCcE
Q 043870 168 NFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGD--H-LYRMD-YMDFVQHHINSGGDI 243 (526)
Q Consensus 168 ~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD--~-l~~~d-l~~ll~~h~~~~ad~ 243 (526)
+.. +.+.. .. .+..++++.++..++. +..+|+.+| . +...+ +..+++...+.++
T Consensus 91 --~~~-i~~v~--gg---------~~r~~SV~~gl~~l~~------~~~~VlihDaarP~vs~~~i~~li~~~~~~ga-- 148 (252)
T PLN02728 91 --DVP-LKFAL--PG---------KERQDSVFNGLQEVDA------NSELVCIHDSARPLVTSADIEKVLKDAAVHGA-- 148 (252)
T ss_pred --CCc-eEEcC--CC---------CchHHHHHHHHHhccC------CCCEEEEecCcCCCCCHHHHHHHHHHHhhCCe--
Confidence 101 22221 11 2456889999887752 234455555 4 55555 6788887766554
Q ss_pred EEEEEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 244 SVCCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 244 ti~~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
.+.+.+..+ .+...++++.|... ++...+...| +| ..|+.+.|....+.
T Consensus 149 ~i~~~~~~d------tik~v~~~~~v~~t---~~R~~l~~~Q--------TP--------------Q~F~~~~l~~a~~~ 197 (252)
T PLN02728 149 AVLGVPVKA------TIKEANSDSFVVKT---LDRKRLWEMQ--------TP--------------QVIKPELLRRGFEL 197 (252)
T ss_pred EEEeecchh------hEEEecCCCceeec---cChHHeEEEe--------CC--------------ccchHHHHHHHHHH
Confidence 455555433 23334445554432 2222111111 11 45666766655554
Q ss_pred hCCCCCChhhchHhhh-hcCCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 324 HYPEANDFGSEVIPMA-TKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 324 ~~~~~~d~~~dil~~l-i~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
...+...+ .|-...+ ..+.+|....-+..-+-|.||+|+..|+..+..
T Consensus 198 ~~~~~~~~-TDd~~~~~~~g~~V~~v~g~~~N~KITtpeDl~~a~~~l~~ 246 (252)
T PLN02728 198 VEREGLEV-TDDVSIVEALKHPVFITEGSYTNIKVTTPDDMLVAERILNE 246 (252)
T ss_pred HHhcCCCc-CcHHHHHHHcCCceEEEecCcccccCCCHHHHHHHHHHHhh
Confidence 32221112 2222222 225677776666667889999999999986643
No 78
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.48 E-value=2.3e-13 Score=129.49 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=74.2
Q ss_pred ECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEc
Q 043870 430 LEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIR 508 (526)
Q Consensus 430 I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~ 508 (526)
||++|+|++.++|.....+++ .-+.||+|+.|. +|+|.+||+||++|+++|.+.+.++..++|.++|+
T Consensus 84 IG~~n~IRE~vTi~~GT~~g~-----------g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiG 152 (260)
T COG1043 84 IGDNNTIREFVTIHRGTVQGG-----------GVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIG 152 (260)
T ss_pred ECCCCeEeeEEEEeccccCCc-----------eeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEc
Confidence 788888888888887765543 228999999987 79999999999999999999999999999999999
Q ss_pred cCcE-----EECCCCEECCCccC
Q 043870 509 SGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 509 ~g~~-----~i~~~~~i~~gt~i 526 (526)
..+. .||+.|+||.+|-|
T Consensus 153 G~saVHQFvrIG~~amiGg~S~v 175 (260)
T COG1043 153 GLSAVHQFVRIGAHAMIGGLSAV 175 (260)
T ss_pred CcceEEEEEEEcchheecccccc
Confidence 6654 88999999988753
No 79
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.46 E-value=6.7e-13 Score=124.80 Aligned_cols=120 Identities=18% Similarity=0.369 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++++..+++++|+|++++....+.+++.. + +
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~-~--------~-- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG-L--------P-- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC-C--------C--
Confidence 4689999999999984 9999999999 99999999999999999999999876554444321 1 1
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCc
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGD 242 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad 242 (526)
+.++.... +..|++++++.++..+.. ..+.+++++||+ ++.. .+..+++.+...+++
T Consensus 64 -~~~~~~~~--------~~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 122 (186)
T cd04182 64 -VVVVINPD--------WEEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAG 122 (186)
T ss_pred -eEEEeCCC--------hhhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCe
Confidence 33332221 126899999999887751 247899999999 4444 478888877654544
No 80
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.45 E-value=9.5e-13 Score=113.13 Aligned_cols=103 Identities=34% Similarity=0.540 Sum_probs=88.6
Q ss_pred Ceee-cCeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe
Q 043870 395 PSKI-EKCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK 473 (526)
Q Consensus 395 ~~~i-~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 473 (526)
|++| ++++|.+++||++|.|+.+.+++|+||+++.|++++.|.+++++.+ +.||+++.|.
T Consensus 1 p~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~ 61 (104)
T cd04651 1 PPYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIR 61 (104)
T ss_pred CceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEE
Confidence 3455 5778889999999999888899999999999999999999998877 8999999999
Q ss_pred ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEE
Q 043870 474 NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTI 520 (526)
Q Consensus 474 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i 520 (526)
+|+|+++++||+++++.+......+ .+.+...|+++|++++++
T Consensus 62 ~siig~~~~Ig~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 62 RAIIDKNVVIPDGVVIGGDPEEDRA----RFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred eEEECCCCEECCCCEECCCcccccc----cceEcCCeEEEEecccCC
Confidence 9999999999999999987433332 556677898999988754
No 81
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.45 E-value=3.9e-12 Score=119.53 Aligned_cols=191 Identities=15% Similarity=0.244 Sum_probs=130.4
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+..+.+||||||.|+||+ .+|.|+|+.|+ ||+.++++.+.+++.+++++|++|......+.+...
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~~--------- 67 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALLAQ--------- 67 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhcc---------
Confidence 456899999999999999 89999999999 999999999999999999999999733322222110
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~ 247 (526)
..+.++.+. .|.+|.+.|++.+...+.. ..+.++++.||+ +...++..+++.+..++ . ..
T Consensus 68 --~~~~~v~np--------d~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~---~v 129 (199)
T COG2068 68 --LGVTVVVNP--------DYAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRLIAAFRARG-A---AV 129 (199)
T ss_pred --CCeEEEeCc--------chhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHHHHhccccC-c---ee
Confidence 114444432 3458999999999988863 225899999999 44556888888776653 2 11
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.+. | .| +..++ .+|+++.|..+ ....
T Consensus 130 ~p~-------~-------~g-------~rG~P------------------------------v~~~~~~~~~l-~~l~-- 155 (199)
T COG2068 130 RPV-------Y-------GG-------ARGHP------------------------------VLLSKDLFPAL-ARLS-- 155 (199)
T ss_pred eee-------c-------cC-------CcCCc------------------------------eeechhHHHHH-hhcC--
Confidence 111 1 01 11222 56777877544 3321
Q ss_pred CCChhhchHhhhhcCC--cEEEEEe-cceeeecCChhhHHHhchhhc
Q 043870 328 ANDFGSEVIPMATKDF--NVQAYLF-NDYWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 328 ~~d~~~dil~~li~~~--~V~~~~~-~~~w~dIgt~~d~~~An~~ll 371 (526)
.|-+ ...++... .+..... .+.-.|||||+||.+|+..+.
T Consensus 156 -GD~G---~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a~~~~~ 198 (199)
T COG2068 156 -GDVG---ARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARAQDLLR 198 (199)
T ss_pred -Cchh---HHHHHHhcCcceEeeccCCceEecCCCHHHHHHHHHhhc
Confidence 2211 44455533 3333333 567999999999999998764
No 82
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.44 E-value=1.4e-12 Score=130.91 Aligned_cols=145 Identities=20% Similarity=0.325 Sum_probs=86.2
Q ss_pred cccCCCCCcccCCCCCCCCeee-cCeeEee-------eEECCCCEEcc-------eee-eceEECCCcEECCCCEEece-
Q 043870 377 FHFYDPQKPIFTSPRFLPPSKI-EKCRVQD-------SIISHGCFLRE-------CSV-EHSIVGIRSRLEYGVELKDT- 439 (526)
Q Consensus 377 ~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~-------s~Ig~~~~i~~-------~~v-~~s~ig~~~~I~~~~~i~~~- 439 (526)
...++|++.+..++.++|+++| .++.|.+ +.||++|.|++ +.| +++.||.+|.|++|+.|+..
T Consensus 105 ~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dg 184 (338)
T COG1044 105 TAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADG 184 (338)
T ss_pred cccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCc
Confidence 3456666666666666666666 3333322 33333333332 223 34555555555555555322
Q ss_pred ------------------EEECCcccchhHHHHHHhhCCC-cceEECCCCEEec-eEECCCCEECCCcEEccCCCcCCcc
Q 043870 440 ------------------MMMGADYYQTEAEIAALLAEGK-VPVGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAE 499 (526)
Q Consensus 440 ------------------v~~~~~~~~~~~~~~~~~~~~~-~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~ 499 (526)
+++|++ +|-++ .+.+..|. ..+.||++++|+| +.|+|||+||++|.|.+..++.+..
T Consensus 185 Fg~a~~~~g~~Ki~q~g~V~Igd~-VeIGa--nT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~ 261 (338)
T COG1044 185 FGYAGTAIGWVKIPQIGRVIIGDD-VEIGA--NTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSV 261 (338)
T ss_pred cccccccCCceEcceeceEEECCc-eEEcc--cceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccc
Confidence 222221 11111 12233332 2377888888888 8999999999999999999999999
Q ss_pred ccCCCeEEccCcEEECCCCEECCCcc
Q 043870 500 RPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 500 ~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
.+|++|.|+..+. |.....|+|+++
T Consensus 262 ~IG~~v~igg~vg-I~gh~~IgD~~~ 286 (338)
T COG1044 262 KIGKYVIIGGQVG-IAGHLEIGDGVT 286 (338)
T ss_pred eECCeEEECccee-ecCceEEcCCCE
Confidence 9999999985533 344444444443
No 83
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.44 E-value=1.2e-12 Score=130.25 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=55.5
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+.||++|.|. +++|+++|.||++|+|++.+.+..+.+++++++|+.++. .||++++|++|++|
T Consensus 102 t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V 170 (255)
T PRK12461 102 TRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALAMMAGGSRI 170 (255)
T ss_pred EEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCcEECCCceE
Confidence 7888888887 599999999999999999999999999999999998875 67888888888764
No 84
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.44 E-value=4e-12 Score=116.27 Aligned_cols=110 Identities=22% Similarity=0.326 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
|.+||+|||+|+||. ..-|||++++|+ |||+|+++.+.+ .+++|++++..+.-.+++|+...+
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g----------- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVG----------- 63 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC-----------
Confidence 578999999999998 357999999999 999999999998 799999999999999999987543
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHH
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHI 237 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~ 237 (526)
++++. ++| .|-..-++.+++.+. .++|++++|+ +.+.. +..+++.+.
T Consensus 64 -v~vi~---tpG-------~GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 -VKVIE---TPG-------EGYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred -ceEEE---cCC-------CChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 55554 222 356667777777665 5999999999 55554 555555544
No 85
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.43 E-value=1.2e-12 Score=130.85 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=55.1
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+.||+++.|. +++|+++|.||+++++++...+.++.+++++++|+.+++ .||++++|++||+|
T Consensus 106 t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V 174 (262)
T PRK05289 106 TRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGV 174 (262)
T ss_pred eEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecce
Confidence 6788888886 589999999999999999999999999999999997765 67888888888875
No 86
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.42 E-value=2.5e-12 Score=133.72 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=53.4
Q ss_pred eEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 464 VGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 464 ~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+.||++|+|.+ +.|++||+||+++.|.....+....++|++++|+.++. .||++++|+++++|
T Consensus 226 t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v 294 (343)
T PRK00892 226 TVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV 294 (343)
T ss_pred ceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCee
Confidence 67788888876 88999999999999999999999999999999997765 56777777777654
No 87
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.41 E-value=9.8e-13 Score=131.12 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=53.7
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+.||++|.|. ++.|+++|.||++|.|.+...+..+.+++++++|+.++. .||++++|+++++|
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGV 171 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEE
Confidence 7899999997 588999999999999999988889999999999987765 66788888877764
No 88
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.41 E-value=1.7e-11 Score=119.74 Aligned_cols=215 Identities=17% Similarity=0.207 Sum_probs=141.4
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcccCCCe
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGF 173 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 173 (526)
|||||+|.++||. .|.+++++|+ |||.|+++.+.+++ +++|+|.+.. +.+.+... .|+. .
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd~--~~i~~~a~-~~g~--------~- 62 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTDD--EEIAEVAK-SYGA--------S- 62 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHHH-HcCC--------E-
Confidence 7999999999996 5999999999 99999999999987 6778776543 44444433 3311 1
Q ss_pred EEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHHHcCCcEEEEEEEcc
Q 043870 174 VEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHINSGGDISVCCLPVD 251 (526)
Q Consensus 174 v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~~~~ad~ti~~~~~~ 251 (526)
+.+....... .+..|+.++++.++..++.. ...+.++++.+|. +... ++..+++.+.+.+++..+.+.+..
T Consensus 63 v~~~r~~~l~-----~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~ 135 (222)
T TIGR03584 63 VPFLRPKELA-----DDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFA 135 (222)
T ss_pred eEEeChHHHc-----CCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccC
Confidence 2222111110 11257889999999887520 1247899999999 5444 589999998887788888887654
Q ss_pred CCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCCCh
Q 043870 252 ESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEANDF 331 (526)
Q Consensus 252 ~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~d~ 331 (526)
... +-....+++|++..+....... ..+.. ...|..+.++|+++++.|.+ . . .+
T Consensus 136 ~~~---~~~~~~~~~g~~~~~~~~~~~~--------------~rQd~-~~~y~~nga~y~~~~~~~~~---~----~-~~ 189 (222)
T TIGR03584 136 FPI---QRAFKLKENGGVEMFFPEHFNT--------------RSQDL-EEAYHDAGQFYWGKSQAWLE---S----G-PI 189 (222)
T ss_pred CCh---HHheEECCCCcEEecCCCcccC--------------CCCCC-chheeeCCeEEEEEHHHHHh---c----C-Cc
Confidence 321 2222445667766655321100 00110 13467899999999997752 1 1 11
Q ss_pred hhchHhhhhcCCcEEEEEecc-eeeecCChhhHHHhchhh
Q 043870 332 GSEVIPMATKDFNVQAYLFND-YWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 332 ~~dil~~li~~~~V~~~~~~~-~w~dIgt~~d~~~An~~l 370 (526)
-+.++..|..+. .-+||+|++||..|+..+
T Consensus 190 ---------~~~~~~~~~m~~~~~iDID~~~D~~~ae~l~ 220 (222)
T TIGR03584 190 ---------FSPHSIPIVLPRHLVQDIDTLEDWERAELLY 220 (222)
T ss_pred ---------cCCCcEEEEeCccceeCCCCHHHHHHHHHHH
Confidence 135567777664 589999999999998754
No 89
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.40 E-value=7.6e-12 Score=118.30 Aligned_cols=118 Identities=20% Similarity=0.277 Sum_probs=84.5
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
+.+||||||.|+||+ ..||+|++++|+ |||+|+++++.. ++++|+|++++..+. +....+ +
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~~~--------~-- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQAGF--------G-- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---HhhccC--------C--
Confidence 468999999999997 259999999999 999999999986 599999998765322 211111 1
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcE
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDI 243 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ 243 (526)
+.++.+... +..|+.++|+.++..++. +.++++.||+ +...+ +..+++.+.+.++++
T Consensus 62 -~~~i~~~~~-------~~~g~~~si~~al~~~~~------~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 120 (186)
T TIGR02665 62 -LPVVPDALA-------DFPGPLAGILAGLRWAGT------DWVLTVPCDTPFLPEDLVARLAAALEASDADI 120 (186)
T ss_pred -CcEEecCCC-------CCCCCHHHHHHHHHhcCC------CeEEEEecCCCcCCHHHHHHHHHHhhccCCcE
Confidence 223332111 236899999999887753 7899999999 66666 667776654434443
No 90
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.40 E-value=3.2e-12 Score=118.76 Aligned_cols=127 Identities=14% Similarity=0.219 Sum_probs=94.8
Q ss_pred CCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eeee-ceEECCCcEECCCCEEeceEEECCcccchhHHHHHH
Q 043870 381 DPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSVE-HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAAL 456 (526)
Q Consensus 381 ~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~-~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~ 456 (526)
++.+.+.+.+.+++.+.| +++.+. .++||++|.|++ +.+. +++||++|.|++++.|.++++..+
T Consensus 9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~------------ 76 (163)
T cd05636 9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG------------ 76 (163)
T ss_pred CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC------------
Confidence 344445555556666666 455554 488899999974 6664 699999999999999988776655
Q ss_pred hhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCc------------------CCccccCCCeEEccCcE-----E
Q 043870 457 LAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGV------------------EEAERPSDGFYIRSGIT-----V 513 (526)
Q Consensus 457 ~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v------------------~~~~~~~~~~~I~~g~~-----~ 513 (526)
+.|++++.+.+++|+++++|++++++.+...- .....++++++|+.+++ +
T Consensus 77 -------~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ 149 (163)
T cd05636 77 -------TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVK 149 (163)
T ss_pred -------CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcE
Confidence 89999999999999999999999999763210 12356677777776654 6
Q ss_pred ECCCCEECCCccC
Q 043870 514 VLKNTTIKDGTII 526 (526)
Q Consensus 514 i~~~~~i~~gt~i 526 (526)
|+++++|++|+++
T Consensus 150 ig~~~~i~agsvV 162 (163)
T cd05636 150 IGPGSWVYPGCVV 162 (163)
T ss_pred ECCCCEECCCcEe
Confidence 6888888888875
No 91
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.40 E-value=1.1e-11 Score=117.86 Aligned_cols=123 Identities=17% Similarity=0.252 Sum_probs=86.8
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCe
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGF 173 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 173 (526)
.+||||||.|+||+ .+|+|++++|+ |||+|+++.+.+.++.+++|++++..+.+ +.+.+.. .. ...
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~-~~~~~~~-~~------~~~ 67 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHL-SWLDPYL-LA------DER 67 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchh-hhhhHhh-hc------CCC
Confidence 58999999999998 58999999999 99999999988889999999998765432 1121110 00 001
Q ss_pred EEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCC
Q 043870 174 VEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGG 241 (526)
Q Consensus 174 v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~a 241 (526)
+.++... .|..|.+++++.++..+.+ ...+.+++++||+ ++..+ +..+++.......
T Consensus 68 ~~~~~~~--------~~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~ 126 (190)
T TIGR03202 68 IMLVCCR--------DACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRPD 126 (190)
T ss_pred eEEEECC--------ChhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence 3333221 2235889999999887642 2347899999999 66666 6677766544333
No 92
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.40 E-value=1e-11 Score=119.37 Aligned_cols=113 Identities=20% Similarity=0.263 Sum_probs=82.8
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
.+.+.+||||||.|+||+ .+|+|++++|+ |||+|+++.+... +++|+|++++. +. ...+.+ .
T Consensus 5 ~~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~~-~~~~~~-----~---- 66 (200)
T PRK02726 5 KNNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-ER-YQSLLP-----P---- 66 (200)
T ss_pred CCCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-HH-HHhhcc-----C----
Confidence 345799999999999998 58999999999 9999999999764 78999988642 22 122110 0
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHH
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHI 237 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~ 237 (526)
.+.++.+.. +..|..++++.++..++. +.+++++||+ ++..+ +..+++.+.
T Consensus 67 ---~~~~i~~~~--------~~~G~~~si~~~l~~~~~------~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 67 ---GCHWLREPP--------PSQGPLVAFAQGLPQIKT------EWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred ---CCeEecCCC--------CCCChHHHHHHHHHhCCC------CcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 133443322 226899999999987753 7899999999 66665 667777654
No 93
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.40 E-value=3.6e-12 Score=121.68 Aligned_cols=145 Identities=21% Similarity=0.315 Sum_probs=93.3
Q ss_pred cCCCCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCccc-chhHHH-H
Q 043870 379 FYDPQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYY-QTEAEI-A 454 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~-~~~~~~-~ 454 (526)
.+++.+.+.+.+.+++++.| +++.|.++.|+++|.|+. +.+.+++||+++.|++++.|...+.++++.. ....++ .
T Consensus 23 ~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~ 102 (193)
T cd03353 23 VIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKK 102 (193)
T ss_pred EECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEec
Confidence 44555556666666777777 567777788888888874 6677788888777777777765444443210 000000 0
Q ss_pred HHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCC-ccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 455 ALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEE-AERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 455 ~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~-~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+.+.++ +.|++.+.|.+|+|+++|.||+++++.+..+... ...++++++|+.+++ .|++++.|++|++|
T Consensus 103 s~ig~~---~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V 177 (193)
T cd03353 103 STIGEG---SKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 177 (193)
T ss_pred ceEcCC---CEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEE
Confidence 111111 2333334445688888899999988887655443 456788888887754 77999999999874
No 94
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.40 E-value=2.9e-12 Score=131.81 Aligned_cols=63 Identities=29% Similarity=0.380 Sum_probs=51.9
Q ss_pred eEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 464 VGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 464 ~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+.||++++|.+ +.|++||+||++++|.+..++....++|++++|+.++. .||++++|+++++|
T Consensus 218 t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 218 TIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred ceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 55666667765 78899999999999999999999999999999985553 67888888888764
No 95
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.37 E-value=2.1e-12 Score=128.68 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=64.7
Q ss_pred ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCcc
Q 043870 421 HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAE 499 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~ 499 (526)
.++||+++.|+++|.|..+...+ ..++.||+++.|. ++.|+++|.||+++.|.+...+....
T Consensus 76 ~v~IG~~~~I~~~~~I~~~~~~~-----------------~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~ 138 (254)
T TIGR01852 76 ELIIGDNNTIREFVTINRGTASG-----------------GGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHV 138 (254)
T ss_pred eEEECCCCEECCCCEECCcccCC-----------------CCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCc
Confidence 35555555555555555544333 1237889999986 58888888889988888888888888
Q ss_pred ccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 500 RPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 500 ~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
+++++++|+.++. .|+++++|+++++|
T Consensus 139 ~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 139 EVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAV 170 (254)
T ss_pred EECCCcEEeccCEECCCcEECCCCEEeeeeeE
Confidence 9999999987765 56777777777764
No 96
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.37 E-value=1.8e-11 Score=117.33 Aligned_cols=104 Identities=17% Similarity=0.311 Sum_probs=74.4
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCC-cchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGG-CYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g-~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
.+++.+||||||.|+||+ .+|+|+|++| + |||+|+++++... +++|+|++++. . +. +
T Consensus 6 ~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~~--~----~~----~----- 63 (196)
T PRK00560 6 IDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKDK--K----FE----F----- 63 (196)
T ss_pred ccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECch--h----cc----c-----
Confidence 456899999999999997 6999999999 9 9999999999877 89999998851 1 10 1
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccCH-HHH
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMDY-MDF 232 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~dl-~~l 232 (526)
. +.++.+... ...|...++..++...+ .+.+++++||+ +...++ .++
T Consensus 64 -~---~~~v~d~~~-------~~~gpl~gi~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 64 -N---APFLLEKES-------DLFSPLFGIINAFLTLQ------TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred -C---CcEEecCCC-------CCCCcHHHHHHHHHhcC------CCeEEEEecCcCcCCHHHHHHH
Confidence 0 223332111 12466667766554333 37899999999 666664 454
No 97
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.33 E-value=3.9e-11 Score=125.80 Aligned_cols=121 Identities=19% Similarity=0.279 Sum_probs=86.5
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
++.+.+||||||.|+||+ ..||+|++++|+ |||+|+++.+.. .+++|+|+++...+.+.+++. +
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~-------~--- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLFP-------G--- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhcc-------C---
Confidence 456899999999999995 279999999999 999999999986 499999977765443332221 0
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDI 243 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ 243 (526)
+.++.+.... ..|..++++.++..++. +.+++++||+ ++..+ +..+++.+...++++
T Consensus 67 ----~~~i~d~~~g-------~~G~~~si~~gl~~~~~------~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~ 125 (366)
T PRK14489 67 ----LPVYPDILPG-------FQGPLSGILAGLEHADS------EYLFVVACDTPFLPENLVKRLSKALAIEGADI 125 (366)
T ss_pred ----CcEEecCCCC-------CCChHHHHHHHHHhcCC------CcEEEeeCCcCCCCHHHHHHHHHHhhccCCeE
Confidence 1222221111 14788999999877642 6799999999 66666 667776655555543
No 98
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.30 E-value=2e-10 Score=111.63 Aligned_cols=216 Identities=18% Similarity=0.226 Sum_probs=130.5
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc-CCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS-GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~-gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
+.|||||||.|+||+ ...||++++++|+ |+|.|+++.+.++ .+++|+|++........+.+...
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----------- 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----------- 65 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-----------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-----------
Confidence 469999999999998 5789999999999 9999999999985 68999999987664333333222
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~~ 249 (526)
..+.++.-. ..-.+|++.++..+.+ ..+.++|..|=- +...+ +.++++...+ +.+..+.+.+
T Consensus 66 ~~v~iv~GG-----------~tR~~SV~ngL~~l~~----~~d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p 129 (221)
T PF01128_consen 66 KKVKIVEGG-----------ATRQESVYNGLKALAE----DCDIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALP 129 (221)
T ss_dssp TTEEEEE-------------SSHHHHHHHHHHCHHC----TSSEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE
T ss_pred CCEEEecCC-----------hhHHHHHHHHHHHHHc----CCCEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEe
Confidence 114444321 2467899999988874 225677766655 55554 6777777655 2344666666
Q ss_pred ccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCCCC
Q 043870 250 VDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPEAN 329 (526)
Q Consensus 250 ~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~~~ 329 (526)
+.+ .+...+++|.|.+..+...-. ..| -=..|+.+.|.+..+....+..
T Consensus 130 ~~D------Tik~v~~~~~v~~tldR~~l~---~~Q----------------------TPQ~F~~~~l~~a~~~a~~~~~ 178 (221)
T PF01128_consen 130 VTD------TIKRVDDDGFVTETLDRSKLW---AVQ----------------------TPQAFRFELLLEAYEKADEEGF 178 (221)
T ss_dssp -SS------EEEEESTTSBEEEEETGGGEE---EEE----------------------EEEEEEHHHHHHHHHTHHHHTH
T ss_pred ccc------cEEEEecCCcccccCCHHHee---eec----------------------CCCeecHHHHHHHHHHHHhcCC
Confidence 543 345566678777655433211 111 1157787877766654311111
Q ss_pred ChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhh
Q 043870 330 DFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSL 370 (526)
Q Consensus 330 d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~l 370 (526)
.+-+|.--....+.+++...-+..=+-|.||+|+..|+..+
T Consensus 179 ~~tDdasl~~~~g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 179 EFTDDASLVEAAGKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp HHSSHHHHHHHTTS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred CccCHHHHHHHcCCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 22222211111267787776666678899999999998765
No 99
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=2.2e-10 Score=108.65 Aligned_cols=235 Identities=17% Similarity=0.250 Sum_probs=165.5
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFG 170 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~ 170 (526)
++..+||+|-=.+|||. -|||-.|+|+ |||.|+.++..++|.++++|.|.. +++.+++.. ||
T Consensus 2 ~~~~viIPAR~~STRLp------gKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~~---------~G 63 (247)
T COG1212 2 MKFVVIIPARLASTRLP------GKPLADIGGK-PMIVRVAERALKSGADRVVVATDD--ERIAEAVQA---------FG 63 (247)
T ss_pred CceEEEEecchhcccCC------CCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHH---------hC
Confidence 34678999998999998 7999999999 999999999999999999999964 566777653 12
Q ss_pred CCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEEEEE
Q 043870 171 DGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISVCCL 248 (526)
Q Consensus 171 ~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti~~~ 248 (526)
.. +......- ..|| +-+..+...+.- ...+-++=+.||. +.... +.++++...+.++++.-++.
T Consensus 64 ~~-avmT~~~h---------~SGT-dR~~Ev~~~l~~---~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~ 129 (247)
T COG1212 64 GE-AVMTSKDH---------QSGT-DRLAEVVEKLGL---PDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAV 129 (247)
T ss_pred CE-EEecCCCC---------CCcc-HHHHHHHHhcCC---CcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeee
Confidence 11 21111111 2466 556666555542 3446777789999 55554 78888888888888877777
Q ss_pred EccCCc---CCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhC
Q 043870 249 PVDESR---ASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHY 325 (526)
Q Consensus 249 ~~~~~~---~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~ 325 (526)
+..++. ..+--.+..|.+|+...|+..|-+...+. .- ..+.+--.|+|.|++.+|.++..+.
T Consensus 130 ~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~~-------------~~p~l~HIGIYayr~~~L~~f~~~~- 194 (247)
T COG1212 130 KITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-FG-------------GTPFLRHIGIYAYRAGFLERFVALK- 194 (247)
T ss_pred ecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-cC-------------CcchhheeehHHhHHHHHHHHHhcC-
Confidence 766532 12233455788999999999887653211 00 0256778999999999999988774
Q ss_pred CCCCC-hh-hchHhhhhcCCcEEEEEeccee-eecCChhhHHHhchhhcC
Q 043870 326 PEAND-FG-SEVIPMATKDFNVQAYLFNDYW-EDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 326 ~~~~d-~~-~dil~~li~~~~V~~~~~~~~w-~dIgt~~d~~~An~~ll~ 372 (526)
|..-+ .+ -|-|+.+-.++++.+......- ..+||++|+.++...+..
T Consensus 195 ps~LE~~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 195 PSPLEKIESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred CchhHHHHHHHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 33211 11 1345666678999998888655 899999999999887643
No 100
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.27 E-value=5.3e-10 Score=108.53 Aligned_cols=223 Identities=16% Similarity=0.198 Sum_probs=141.9
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChh-HHHHHhhhcccCCCCc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQ-SLNRHISRTYNLGDGM 167 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~ 167 (526)
.+++.+||||||.|+||. ...||++++++|+ |||+|+++.+..+. |++|+|+++.... .+.++.. +
T Consensus 2 ~~~~~~vilAaG~G~R~~---~~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~--~------ 69 (230)
T COG1211 2 RMMVSAVILAAGFGSRMG---NPVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--L------ 69 (230)
T ss_pred CceEEEEEEcCccccccC---CCCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh--h------
Confidence 346899999999999999 4799999999999 99999999999874 7999999987443 2223321 1
Q ss_pred ccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEEE
Q 043870 168 NFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDISV 245 (526)
Q Consensus 168 ~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~ti 245 (526)
.....+.++.-. ..-.++++.++..+.. ...+.|||..+=- +...+ +.++++...+ ....+
T Consensus 70 -~~~~~v~~v~GG-----------~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~~~--~~aai 132 (230)
T COG1211 70 -SADKRVEVVKGG-----------ATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELADK--YGAAI 132 (230)
T ss_pred -ccCCeEEEecCC-----------ccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhhcc--CCcEE
Confidence 011224444322 2467899999988872 2335666665554 44444 7777744333 34466
Q ss_pred EEEEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhC
Q 043870 246 CCLPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHY 325 (526)
Q Consensus 246 ~~~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~ 325 (526)
.+.|+.+ .+...++++.+........-.. ..+| ..|+.+.|.+.++...
T Consensus 133 ~alpv~D------Tik~~~~~~~i~~t~~R~~l~~-----------~QTP--------------Q~F~~~~L~~a~~~a~ 181 (230)
T COG1211 133 LALPVTD------TLKRVDADGNIVETVDRSGLWA-----------AQTP--------------QAFRLELLKQALARAF 181 (230)
T ss_pred EEeeccC------cEEEecCCCCeeeccChhhhhh-----------hhCC--------------ccccHHHHHHHHHHHH
Confidence 6666643 3444555677766654433210 1111 3566777776666543
Q ss_pred CCCCChhhchHhhhhcCCcEEEEEecceeeecCChhhHHHhchhhcC
Q 043870 326 PEANDFGSEVIPMATKDFNVQAYLFNDYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 326 ~~~~d~~~dil~~li~~~~V~~~~~~~~w~dIgt~~d~~~An~~ll~ 372 (526)
.+..++.+|.--....+.++..+.-+-+-+-|.||+|+..|+..+..
T Consensus 182 ~~~~~~tDdas~~e~~G~~v~lV~G~~~n~KiTtpeDL~~a~~il~~ 228 (230)
T COG1211 182 AEGREITDDASAIEKAGGPVSLVEGSADNFKITTPEDLEIAEAILRR 228 (230)
T ss_pred hcCCCcCCHHHHHHHcCCCeEEEecCcceeEecCHHHHHHHHHHhcC
Confidence 33333333322222226788877767678899999999999987643
No 101
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.26 E-value=2.1e-10 Score=120.53 Aligned_cols=111 Identities=10% Similarity=0.162 Sum_probs=79.3
Q ss_pred CCCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcc
Q 043870 89 DPKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 89 ~~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
+.+++.+||||||.|+||+ .+|+|++++|+ |||+|+++.+... +++|+|+++..... .+. .+
T Consensus 171 ~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~~-~~~vvV~~~~~~~~---~~~-~~------- 232 (369)
T PRK14490 171 EEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRPH-CQEVFISCRAEQAE---QYR-SF------- 232 (369)
T ss_pred ccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHhh-CCEEEEEeCCchhh---HHh-hc-------
Confidence 3466899999999999998 59999999999 9999999999864 78888887654221 111 11
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHH
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQH 235 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~ 235 (526)
+ +.++.+... ..|...++..++.... .+.+++++||+ +.+.+ +..+++.
T Consensus 233 -~---v~~i~d~~~--------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 233 -G---IPLITDSYL--------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred -C---CcEEeCCCC--------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 1 334433222 1577788888766543 26799999999 66666 5555543
No 102
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.23 E-value=7e-11 Score=117.81 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=27.7
Q ss_pred cCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee-eceEECCCcEECCCCEEe
Q 043870 379 FYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELK 437 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~ 437 (526)
+++|.+.+.+++.++|.+.|.. ++.||++|.|++ +.| .++.||++++|+++|.|.
T Consensus 7 ~I~~~a~ig~~~~I~p~~~I~~----~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~ 63 (254)
T cd03351 7 IVDPGAKIGENVEIGPFCVIGP----NVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIG 63 (254)
T ss_pred EECCCCEECCCCEECCCcEECC----CCEECCCCEECCCcEEeCCeEECCCCEEecceeec
Confidence 4445555555555555555532 355555555554 222 245555555555555554
No 103
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.22 E-value=4.8e-10 Score=110.10 Aligned_cols=115 Identities=24% Similarity=0.369 Sum_probs=79.7
Q ss_pred EEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccCh--hHHHHHhhhcccCCCCcccCC
Q 043870 95 SIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNS--QSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 95 aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~--~~l~~~l~~~~~~~~~~~~~~ 171 (526)
|||||||.|+||. +|+|++++|+ |||+|+++.+..++ +++|+|+++... +.+.+++.. + +
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-~----~----- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-L----G----- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-c----C-----
Confidence 7999999999995 5999999999 99999999999987 899999998765 455555431 1 1
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEE
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDIS 244 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~t 244 (526)
+.++.... .+ .+..+...+.. ...+.++++.||+ +...+ +.++++.+...+.+++
T Consensus 65 --v~~v~~~~----------~~---~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 65 --VKVFRGSE----------ED---VLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred --CeEEECCc----------hh---HHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 33332111 11 12222222221 2347899999999 66555 7899988876666554
No 104
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.20 E-value=4.4e-10 Score=107.08 Aligned_cols=113 Identities=20% Similarity=0.295 Sum_probs=81.8
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
+++|.+||||||.|+|| .+|+|++++|+ ||++|+++.|....- .++|....+.+. +.. +
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~----------~ 60 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YAE----------F 60 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hhc----------c
Confidence 45689999999999999 48999999999 999999999998755 566665544321 111 1
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccCH-HHHHHHHHHcC
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMDY-MDFVQHHINSG 240 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~dl-~~ll~~h~~~~ 240 (526)
+ ++++.+... + .|...+++.++..+.. +.+++++||+ +...++ ..+.+...+.+
T Consensus 61 g---~~vv~D~~~-------~-~GPL~Gi~~al~~~~~------~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 G---LPVVPDELP-------G-FGPLAGILAALRHFGT------EWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred C---CceeecCCC-------C-CCCHHHHHHHHHhCCC------CeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 1 445554333 1 2899999999887753 7899999999 666664 55555544433
No 105
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.19 E-value=2.4e-10 Score=110.10 Aligned_cols=144 Identities=22% Similarity=0.320 Sum_probs=87.7
Q ss_pred cCCCCCcccCCCCCCCCeee-cCeeE-eeeEECCCCEEcc-eee-eceEECCCcEECCCCEEec----------------
Q 043870 379 FYDPQKPIFTSPRFLPPSKI-EKCRV-QDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKD---------------- 438 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i-~~~~i-~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~---------------- 438 (526)
++++.+.+...+.+++.+.| .++.| .++.||++|+|+. +.+ .+++||+++.|++++.|..
T Consensus 9 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~ 88 (205)
T cd03352 9 SIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIP 88 (205)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcC
Confidence 44555555556666666666 33555 3477777777764 444 3366666666666666631
Q ss_pred ---eEEECCccc-chhHHHHHHhhCC-CcceEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE
Q 043870 439 ---TMMMGADYY-QTEAEIAALLAEG-KVPVGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT 512 (526)
Q Consensus 439 ---~v~~~~~~~-~~~~~~~~~~~~~-~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~ 512 (526)
.+.++.+.+ ..... +..+ ...+.||+++.|.+ +.|+++++||+++.|.+...+.....++++++|+.+++
T Consensus 89 ~~~~v~Ig~~~~Ig~~~~----i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~ 164 (205)
T cd03352 89 QLGGVIIGDDVEIGANTT----IDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVG 164 (205)
T ss_pred CcceEEECCCEEECCCCE----EeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCE
Confidence 233332211 10000 0000 11256777777764 77888888888888888888888888899999987765
Q ss_pred -----EECCCCEECCCccC
Q 043870 513 -----VVLKNTTIKDGTII 526 (526)
Q Consensus 513 -----~i~~~~~i~~gt~i 526 (526)
+|++++.|++++++
T Consensus 165 v~~~~~ig~~~~i~~~s~v 183 (205)
T cd03352 165 IAGHLTIGDGVVIGAGSGV 183 (205)
T ss_pred EeCCcEECCCCEEcCCCEE
Confidence 56777777777653
No 106
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.19 E-value=1e-10 Score=117.72 Aligned_cols=149 Identities=18% Similarity=0.204 Sum_probs=90.6
Q ss_pred cCChhhHHHhchhhcCCCC-CcccCCCCCcccCCCCCCCCeee-cCeeEee-eEECCCCEEcc-eee-eceEECCCcEEC
Q 043870 357 IGTIKSFFDANLSLTDKPP-KFHFYDPQKPIFTSPRFLPPSKI-EKCRVQD-SIISHGCFLRE-CSV-EHSIVGIRSRLE 431 (526)
Q Consensus 357 Igt~~d~~~An~~ll~~~~-~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~-s~Ig~~~~i~~-~~v-~~s~ig~~~~I~ 431 (526)
..+|.-.+.....++.+++ .+.-+.|.+.+.+++.+.+++.| +++.|.. +.||++|.|.. +.| .++.||+++.|.
T Consensus 78 ~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~ 157 (338)
T COG1044 78 VKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIH 157 (338)
T ss_pred eCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEc
Confidence 3445555555555554443 34567788888888888888888 4555543 66777777764 333 555666666666
Q ss_pred CCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe--------------------ceEECCCCEECCCcEEcc
Q 043870 432 YGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK--------------------NCIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 432 ~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~--------------------~~iI~~~~~Ig~~~~i~~ 491 (526)
.++.|...+++|++ |.|++|+.|. +++|++++.||.|+.|.-
T Consensus 158 ~~v~I~~~~~IG~~------------------v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idr 219 (338)
T COG1044 158 PNVTIYHNVVIGNN------------------VIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDR 219 (338)
T ss_pred CCCEEecCcEECCc------------------eEECCCCEEccCccccccccCCceEcceeceEEECCceEEcccceecc
Confidence 66666555555554 5555555544 344455555555555532
Q ss_pred CCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 492 KDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 492 ~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
+.-+.+.+++++.|... +-|++|+.||.+|.|
T Consensus 220 --ga~~dTvIg~~~kIdN~-vqIaHnv~IG~~~~I 251 (338)
T COG1044 220 --GALDDTVIGEGVKIDNL-VQIGHNVRIGEHCII 251 (338)
T ss_pred --ccccCceecCCcEEcce-eEEccccEECCCcEE
Confidence 22345788888888654 566888888888865
No 107
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.18 E-value=1.5e-10 Score=110.44 Aligned_cols=89 Identities=16% Similarity=0.303 Sum_probs=62.9
Q ss_pred CCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhh
Q 043870 380 YDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLA 458 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~ 458 (526)
+.+...+...+++.|.++|.. ++.||++|+|++ +.|.++.||+++.|++++.|.++++..+
T Consensus 12 ~~~~v~ig~~~~I~~~a~i~~----~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~-------------- 73 (193)
T cd03353 12 IDGDVEIGVDVVIDPGVILEG----KTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNG-------------- 73 (193)
T ss_pred EcCCeEECCCcEECCCCEEeC----cCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCC--------------
Confidence 334444444444444444432 488999999974 7788889999999999999987665444
Q ss_pred CCCcceEECCCCEEe-ceEECCCCEECCCcEEcc
Q 043870 459 EGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 459 ~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 491 (526)
+.||+++.|+ +++|+++++|++++.+.+
T Consensus 74 -----~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~ 102 (193)
T cd03353 74 -----ATVGPFAHLRPGTVLGEGVHIGNFVEIKK 102 (193)
T ss_pred -----CEECCccEEcCccEECCCCEECCcEEEec
Confidence 6788888886 577777777777666543
No 108
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.15 E-value=2.4e-10 Score=113.94 Aligned_cols=125 Identities=15% Similarity=0.177 Sum_probs=71.8
Q ss_pred cCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee-eceEECCCcEECCCCEEec------------eEEECC
Q 043870 379 FYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKD------------TMMMGA 444 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~------------~v~~~~ 444 (526)
++++.+.+...+.++|.+.|.. ++.|+++|+|++ |.| .+++||+++.|++++.|.. .+.+|+
T Consensus 6 ~I~~~a~Ig~~~~I~~~~~I~~----~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~ 81 (254)
T TIGR01852 6 IIEPGAEIGENVEIGPFCIVGP----GVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGD 81 (254)
T ss_pred EeCCCCEECCCCEECCCCEECC----CCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECC
Confidence 4455555666666666666533 355666666654 333 3688888888888888864 455555
Q ss_pred cccchhHHHHHHhhCCCcceEECCCCEEeceEE-C-CCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCC
Q 043870 445 DYYQTEAEIAALLAEGKVPVGIGRDTKIKNCII-D-KNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKN 517 (526)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI-~-~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~ 517 (526)
+ +.|+++|.|..... + .+++||+++.|.....+...+.++++++|+.++. +||++
T Consensus 82 ~------------------~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~ 143 (254)
T TIGR01852 82 N------------------NTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDY 143 (254)
T ss_pred C------------------CEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCC
Confidence 4 56666666652211 1 2445555555544444445556666666665543 44666
Q ss_pred CEECCCcc
Q 043870 518 TTIKDGTI 525 (526)
Q Consensus 518 ~~i~~gt~ 525 (526)
+.|+++++
T Consensus 144 ~~Ig~~~~ 151 (254)
T TIGR01852 144 AIIGGLVA 151 (254)
T ss_pred cEEeccCE
Confidence 66555554
No 109
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.14 E-value=1e-09 Score=113.69 Aligned_cols=109 Identities=12% Similarity=0.156 Sum_probs=79.6
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGD 171 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~ 171 (526)
++.+||||||.|+||+ .+|.|+|+.|+ ||++|+++.+... +++|+|+++... ..+ +.+.
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~---~~~----~~~~------- 218 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ---WQG----TPLE------- 218 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH---hhh----cccc-------
Confidence 5789999999999998 69999999999 9999999888764 889988886421 111 0000
Q ss_pred CeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHH
Q 043870 172 GFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHH 236 (526)
Q Consensus 172 ~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h 236 (526)
.+.++.+... ..|...+|+.++..... +.+++++||+ +...+ +..+++.+
T Consensus 219 -~v~~I~D~~~--------~~GPlagI~aaL~~~~~------~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 -NLPTLPDRGE--------SVGPISGILTALQSYPG------VNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred -CCeEEeCCCC--------CCChHHHHHHHHHhCCC------CCEEEEECCcCCCCHHHHHHHHHhh
Confidence 0233333222 26999999999876542 5789999999 66666 56666654
No 110
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.13 E-value=3.5e-10 Score=113.21 Aligned_cols=129 Identities=14% Similarity=0.197 Sum_probs=69.0
Q ss_pred CCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eee-eceEECCCcEECCCCEEec------------eEEEC
Q 043870 380 YDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKD------------TMMMG 443 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~------------~v~~~ 443 (526)
++|.+.+.+++.+++++.| +.|.|. ++.||++|.|+. +.| .+++||++|+|+++|.|.. .+.+|
T Consensus 5 I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG 84 (262)
T PRK05289 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIG 84 (262)
T ss_pred cCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEEC
Confidence 3444444444444444444 233332 467777777764 333 3566666666666666654 34444
Q ss_pred CcccchhHHHHHHhhCCCcceEECCCCEEeceEE--CCCCEECCCcEEccCCCcCCccccCCCeEEccCc-----EEECC
Q 043870 444 ADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCII--DKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGI-----TVVLK 516 (526)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI--~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~-----~~i~~ 516 (526)
++ +.|++++.|..+.+ +.+++||+++.|.....+...+.+++++.|..++ ++|++
T Consensus 85 ~~------------------~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd 146 (262)
T PRK05289 85 DN------------------NTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGD 146 (262)
T ss_pred CC------------------CEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCC
Confidence 43 45555555543210 1124555555555554454555666666665443 36677
Q ss_pred CCEECCCccC
Q 043870 517 NTTIKDGTII 526 (526)
Q Consensus 517 ~~~i~~gt~i 526 (526)
++.||++++|
T Consensus 147 ~~~Ig~~~~i 156 (262)
T PRK05289 147 YAIIGGLTAV 156 (262)
T ss_pred cEEEeeccee
Confidence 7777777654
No 111
>PLN02296 carbonate dehydratase
Probab=99.13 E-value=4.3e-10 Score=112.39 Aligned_cols=111 Identities=17% Similarity=0.321 Sum_probs=71.7
Q ss_pred ccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee----eceEECCCcEECCCCEEec----------eEEECCcccchh
Q 043870 386 IFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV----EHSIVGIRSRLEYGVELKD----------TMMMGADYYQTE 450 (526)
Q Consensus 386 i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v----~~s~ig~~~~I~~~~~i~~----------~v~~~~~~~~~~ 450 (526)
+...+.+.|.+.+.+ ++.||++|.|.. |.| ..++||++|.|+++|.|.. .+++|++
T Consensus 55 I~~~~~I~p~A~V~G----~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~----- 125 (269)
T PLN02296 55 VDKDAFVAPSASVIG----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDN----- 125 (269)
T ss_pred cCCCCEECCCcEEEc----ceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCC-----
Confidence 444445555554432 345555555542 333 2468999999999999862 2455554
Q ss_pred HHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 451 AEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 451 ~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
+.||.||.|.+|+|+++|.||.+++|.... ++++++.|+.|+++ .++++|+++++
T Consensus 126 -------------v~IG~~avI~g~~Igd~v~IG~ga~I~~gv------~Ig~~a~IgagSvV-~~~~~I~~~~~ 180 (269)
T PLN02296 126 -------------VTIGHSAVLHGCTVEDEAFVGMGATLLDGV------VVEKHAMVAAGALV-RQNTRIPSGEV 180 (269)
T ss_pred -------------CEECCCceecCCEECCCcEECCCcEECCCe------EECCCCEECCCCEE-ecCCEeCCCeE
Confidence 778888888888888888888888887553 56666667666444 56666666654
No 112
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.13 E-value=9.9e-10 Score=101.24 Aligned_cols=95 Identities=19% Similarity=0.362 Sum_probs=66.2
Q ss_pred eeEECCCCEEcc-eeee----ceEECCCcEECCCCEE-----eceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec
Q 043870 405 DSIISHGCFLRE-CSVE----HSIVGIRSRLEYGVEL-----KDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN 474 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v~----~s~ig~~~~I~~~~~i-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~ 474 (526)
++.||++|+|++ |.+. .+.||++|.|+++|.| .++++ +++ +.|++++.|.+
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~I-g~~------------------~~Ig~~~~i~~ 78 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVL-EEN------------------GHIGHGAILHG 78 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEE-cCC------------------CEECCCcEEEC
Confidence 466777777763 4454 3789999999999999 33444 443 78899998889
Q ss_pred eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 475 CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 475 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
|+|+++|.||.+++|.... +++++++|+.+++ +.++..|+++++
T Consensus 79 ~~Ig~~~~Ig~~~~I~~g~------~Ig~~~~Ig~~s~-v~~~~~i~~~~~ 122 (155)
T cd04745 79 CTIGRNALVGMNAVVMDGA------VIGEESIVGAMAF-VKAGTVIPPRSL 122 (155)
T ss_pred CEECCCCEECCCCEEeCCC------EECCCCEECCCCE-eCCCCEeCCCCE
Confidence 9999999999998887653 4556666665543 245555555543
No 113
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.12 E-value=4.9e-10 Score=104.06 Aligned_cols=98 Identities=13% Similarity=0.217 Sum_probs=74.0
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGK 485 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~ 485 (526)
+.|++++.|.. .++||++|+|+++|.|+..++++++ +.|++++.|.+|+|+++++|+.
T Consensus 24 ~~I~~~a~i~~----~v~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~siig~~~~I~~ 81 (163)
T cd05636 24 AIVRSGAYIEG----PVIIGKGCEIGPNAYIRGYTVLGDG------------------CVVGNSVEVKNSIIMDGTKVPH 81 (163)
T ss_pred CEECCCCEEeC----CeEECCCCEECCCCEEcCCCEECCC------------------CEECCCcEEeeeEecCCCEecc
Confidence 44555555443 7999999999999999976666665 8999999999999999999999
Q ss_pred CcEEccCCCcCCccccCCCeEEccC-----------------------cEEECCCCEECCCccC
Q 043870 486 NVIIANKDGVEEAERPSDGFYIRSG-----------------------ITVVLKNTTIKDGTII 526 (526)
Q Consensus 486 ~~~i~~~~~v~~~~~~~~~~~I~~g-----------------------~~~i~~~~~i~~gt~i 526 (526)
++.+.++ .+.++.++++++.+..+ .++|++++.||++++|
T Consensus 82 ~~~i~~s-iIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i 144 (163)
T cd05636 82 LNYVGDS-VLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSL 144 (163)
T ss_pred CCEEecC-EECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEE
Confidence 8888654 46677777777766321 1466777777777653
No 114
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.11 E-value=1e-09 Score=102.16 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=59.8
Q ss_pred eeEECCCCEEcc-eeee----ceEECCCcEECCCCEEeceEE----------ECCcccchhHHHHHHhhCCCcceEECCC
Q 043870 405 DSIISHGCFLRE-CSVE----HSIVGIRSRLEYGVELKDTMM----------MGADYYQTEAEIAALLAEGKVPVGIGRD 469 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v~----~s~ig~~~~I~~~~~i~~~v~----------~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 469 (526)
++.||++|+|++ +.+. .++||++|.|+++|.|.+++. +|++ +.|+.+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~------------------~~i~~~ 78 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSN------------------NVFEVG 78 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCC------------------CEECCC
Confidence 355666666653 3342 368899999999998887654 3332 444555
Q ss_pred CEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 470 TKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 470 ~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
+.|.+++||++|.||.+++|.... .+++++.|+.++++ .+++.|+++++
T Consensus 79 ~~i~~~~IGd~~~Ig~~a~I~~gv------~Ig~~~~IgagsvV-~~~~~i~~~~v 127 (164)
T cd04646 79 CKCEALKIGNNNVFESKSFVGKNV------IITDGCIIGAGCKL-PSSEILPENTV 127 (164)
T ss_pred cEEEeeEECCCCEEeCCCEECCCC------EECCCCEEeCCeEE-CCCcEECCCeE
Confidence 666677778888888877776543 45555555555332 55555555544
No 115
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.10 E-value=8.3e-10 Score=105.20 Aligned_cols=96 Identities=13% Similarity=0.321 Sum_probs=66.3
Q ss_pred eeEECCCCEEcc-eeee----ceEECCCcEECCCCEEec----eEEECCcccchhHHHHHHhhCCCcceEECCCCEEece
Q 043870 405 DSIISHGCFLRE-CSVE----HSIVGIRSRLEYGVELKD----TMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNC 475 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v~----~s~ig~~~~I~~~~~i~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ 475 (526)
++.||++|.|+. |.|. .++||++|.|+++|.|+. .++++++ +.||+++.|.+|
T Consensus 26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~------------------~~Ig~~a~I~~s 87 (192)
T TIGR02287 26 DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN------------------GHVGHGAILHGC 87 (192)
T ss_pred eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC------------------CEECCCCEEcCC
Confidence 466677777763 4443 478899999999999942 2334443 789999999999
Q ss_pred EECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 476 IIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 476 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
+|+++|.||.++++.+.. ++++++.|+.|+. |.++..|+++++
T Consensus 88 iIg~~~~IG~ga~I~~g~------~IG~~s~Vgags~-V~~~~~ip~~~l 130 (192)
T TIGR02287 88 IVGRNALVGMNAVVMDGA------VIGENSIVAASAF-VKAGAEMPAQYL 130 (192)
T ss_pred EECCCCEECCCcccCCCe------EECCCCEEcCCCE-ECCCCEECCCeE
Confidence 999999999998886653 4556666665543 355556655543
No 116
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.10 E-value=4.6e-10 Score=120.78 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=30.6
Q ss_pred eEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEEC
Q 043870 406 SIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig 484 (526)
+.||++|.|+. +.|.+++||++|+|+++|.|...+.+|++ +.||+++.|.+++|++++.|+
T Consensus 287 ~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~------------------~~Ig~~~~i~~~~i~~~~~i~ 348 (446)
T PRK14353 287 VTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEG------------------AKVGNFVEVKNAKLGEGAKVN 348 (446)
T ss_pred CEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCC------------------eEEcCceEEeceEECCCCEEC
Confidence 34444444432 33444555555555555555433333333 445555555555555555444
Q ss_pred CCcEEc
Q 043870 485 KNVIIA 490 (526)
Q Consensus 485 ~~~~i~ 490 (526)
.++.+.
T Consensus 349 ~~~~i~ 354 (446)
T PRK14353 349 HLTYIG 354 (446)
T ss_pred CeeEEc
Confidence 444443
No 117
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.10 E-value=5.3e-10 Score=111.25 Aligned_cols=126 Identities=14% Similarity=0.230 Sum_probs=70.7
Q ss_pred cCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee-eceEECCCcEECCCCEEec------------eEEECC
Q 043870 379 FYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKD------------TMMMGA 444 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~------------~v~~~~ 444 (526)
.++|.+.+...+.++|.+.|.+ ++.||++|.|+. +.| .++.||+++.|++++.|+. .+.+|+
T Consensus 7 ~I~~~a~Ig~~v~Igp~~~I~~----~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~ 82 (255)
T PRK12461 7 VIDPSAKLGSGVEIGPFAVIGA----NVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGD 82 (255)
T ss_pred EECCCCEECCCCEECCCCEECC----CCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECC
Confidence 3344444444444444444422 466777777764 333 2455555555555555543 233333
Q ss_pred cccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCc-----EEECCCC
Q 043870 445 DYYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGI-----TVVLKNT 518 (526)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~-----~~i~~~~ 518 (526)
+ +.|++++.|.. +.++.+++||+++.|.+...+...+.+++++.|+.++ ++|++++
T Consensus 83 ~------------------~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a 144 (255)
T PRK12461 83 R------------------NVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRA 144 (255)
T ss_pred c------------------eEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCe
Confidence 2 34444444432 3334567777777777666677777778888877554 3677888
Q ss_pred EECCCccC
Q 043870 519 TIKDGTII 526 (526)
Q Consensus 519 ~i~~gt~i 526 (526)
.|+++++|
T Consensus 145 ~Ig~~a~V 152 (255)
T PRK12461 145 IISGNCLV 152 (255)
T ss_pred EEeCCCEE
Confidence 87777653
No 118
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=3.1e-10 Score=116.70 Aligned_cols=125 Identities=14% Similarity=0.258 Sum_probs=94.9
Q ss_pred cCCCCCc-ccCCCCCCCCeee-cCeeEee-eEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHH
Q 043870 379 FYDPQKP-IFTSPRFLPPSKI-EKCRVQD-SIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIA 454 (526)
Q Consensus 379 ~~~~~~~-i~~~~~~~~~~~i-~~~~i~~-s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~ 454 (526)
++||... |.....+++.+.| .++.+.+ +.||++|+|++ |.|++|.||+++.|...+.|.++.+-.+
T Consensus 257 l~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~---------- 326 (460)
T COG1207 257 LIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG---------- 326 (460)
T ss_pred EeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC----------
Confidence 4677644 5677788888888 5677765 89999999985 6779999999999998899988877655
Q ss_pred HHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 455 ALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 455 ~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
+.||..++|| ++.++.+++||..|.+.++ .+.+.+..+.-+|||+ ..||+++.||+||+
T Consensus 327 ---------~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a-~ig~gsKa~HLtYlGD--A~iG~~~NiGAGtI 386 (460)
T COG1207 327 ---------ATVGPFARLRPGAVLGADVHIGNFVEVKKA-TIGKGSKAGHLTYLGD--AEIGENVNIGAGTI 386 (460)
T ss_pred ---------cccCCccccCCcCcccCCCeEeeeEEEecc-cccCCccccceeeecc--ceecCCceeccceE
Confidence 7899999999 6999999999999999876 4565555555556554 34455555555553
No 119
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.07 E-value=7.4e-10 Score=110.34 Aligned_cols=112 Identities=13% Similarity=0.120 Sum_probs=59.4
Q ss_pred CCCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHh
Q 043870 381 DPQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALL 457 (526)
Q Consensus 381 ~~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~ 457 (526)
++...+.+.+.+.++++| +++.|..+.|+.|+.|++ +.| .++.||.++.||++|.|..++.+++.. .
T Consensus 101 ~~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~----------~ 170 (272)
T PRK11830 101 EAGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVL----------E 170 (272)
T ss_pred cCCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCc----------c
Confidence 334444444445555555 344444444444444443 222 245666666666666666665555421 0
Q ss_pred hCCCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccC
Q 043870 458 AEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPS 502 (526)
Q Consensus 458 ~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~ 502 (526)
-....|+.||++|.|. +|.|..+++||++++|+....+....++.
T Consensus 171 ~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~ 216 (272)
T PRK11830 171 PLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIY 216 (272)
T ss_pred ccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEEC
Confidence 1122357777777776 46777777777777776665555544444
No 120
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.06 E-value=1.2e-09 Score=89.35 Aligned_cols=64 Identities=23% Similarity=0.485 Sum_probs=33.9
Q ss_pred ECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCC
Q 043870 408 ISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN 486 (526)
Q Consensus 408 Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 486 (526)
||++|.|++ +.+.++.||+++.|+.+|+|++++++.+ +.||+++.|.+|+|++++.||++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 344444432 3334555555555555555555554443 45555555555555555555555
Q ss_pred cEEc
Q 043870 487 VIIA 490 (526)
Q Consensus 487 ~~i~ 490 (526)
+.+.
T Consensus 63 ~~v~ 66 (81)
T cd04652 63 CKLK 66 (81)
T ss_pred CEEc
Confidence 5554
No 121
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.06 E-value=9.8e-10 Score=89.79 Aligned_cols=77 Identities=17% Similarity=0.404 Sum_probs=67.3
Q ss_pred CCCCeee-cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCC
Q 043870 392 FLPPSKI-EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRD 469 (526)
Q Consensus 392 ~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 469 (526)
+++.+.| +++.+.++.|+++|.|+. +.|++++|++++.|+++|.|.+++++.+ +.||++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCC
Confidence 4556666 466677899999999974 7889999999999999999999888877 899999
Q ss_pred CEEeceEECCCCEECCCc
Q 043870 470 TKIKNCIIDKNAKIGKNV 487 (526)
Q Consensus 470 ~~i~~~iI~~~~~Ig~~~ 487 (526)
+.+.+|+|+++++|++++
T Consensus 63 ~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 63 CKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred CEEccCEECCCcEeCCCC
Confidence 999999999999999875
No 122
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.06 E-value=1e-09 Score=104.97 Aligned_cols=95 Identities=19% Similarity=0.318 Sum_probs=63.0
Q ss_pred eeEECCCCEEcc-eeee----ceEECCCcEECCCCEEece----EEECCcccchhHHHHHHhhCCCcceEECCCCEEece
Q 043870 405 DSIISHGCFLRE-CSVE----HSIVGIRSRLEYGVELKDT----MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNC 475 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v~----~s~ig~~~~I~~~~~i~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ 475 (526)
++.||++|.|+. +.|. .++||.+|.|+++|.|+.. ++++++ +.||.++.|.+|
T Consensus 28 ~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~------------------~~Ig~~a~i~g~ 89 (196)
T PRK13627 28 DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN------------------GHIGHGAILHGC 89 (196)
T ss_pred ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC------------------CEECCCcEEeeE
Confidence 345555555553 3332 2578888888888888654 234443 788888888899
Q ss_pred EECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCc
Q 043870 476 IIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGT 524 (526)
Q Consensus 476 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt 524 (526)
+|+++|.||.++++.+.. ++++++.|+.|++| .++..+++++
T Consensus 90 vIG~~v~IG~ga~V~~g~------~IG~~s~Vgags~V-~~~~~ip~~~ 131 (196)
T PRK13627 90 VIGRDALVGMNSVIMDGA------VIGEESIVAAMSFV-KAGFQGEKRQ 131 (196)
T ss_pred EECCCCEECcCCccCCCc------EECCCCEEcCCCEE-eCCcCcCCCc
Confidence 999999999998887654 45556666666444 4555555544
No 123
>PLN02472 uncharacterized protein
Probab=99.06 E-value=1.2e-09 Score=107.76 Aligned_cols=111 Identities=15% Similarity=0.262 Sum_probs=70.9
Q ss_pred ccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee----eceEECCCcEECCCCEEec----------eEEECCcccchh
Q 043870 386 IFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV----EHSIVGIRSRLEYGVELKD----------TMMMGADYYQTE 450 (526)
Q Consensus 386 i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v----~~s~ig~~~~I~~~~~i~~----------~v~~~~~~~~~~ 450 (526)
+...+.+.|++.+.+ ++.||++|.|.. +.| ...+||.++.|+++|.|+. .+++|++
T Consensus 62 i~~~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~----- 132 (246)
T PLN02472 62 VAVDAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRY----- 132 (246)
T ss_pred cCCCCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCC-----
Confidence 444455555555532 244444444442 222 2368999999999999952 3556654
Q ss_pred HHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 451 AEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 451 ~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
+.||++|.|.+|+|+++|.||.+++|.+.. .+++++.|+.|++ +..+..|++|++
T Consensus 133 -------------v~IG~~s~L~~~~Igd~v~IG~~svI~~ga------vIg~~~~Ig~gsv-V~~g~~Ip~g~~ 187 (246)
T PLN02472 133 -------------VTIGAYSLLRSCTIEPECIIGQHSILMEGS------LVETHSILEAGSV-LPPGRRIPTGEL 187 (246)
T ss_pred -------------CEECCCcEECCeEEcCCCEECCCCEECCCC------EECCCCEECCCCE-ECCCCEeCCCCE
Confidence 889999999999999999999999887654 4455555555532 245555555543
No 124
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.05 E-value=1e-09 Score=112.95 Aligned_cols=153 Identities=17% Similarity=0.185 Sum_probs=107.1
Q ss_pred eeeecCChhhHHH-hchhhcCCCCCcccCCCCCcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eee-eceEECCC
Q 043870 353 YWEDIGTIKSFFD-ANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSV-EHSIVGIR 427 (526)
Q Consensus 353 ~w~dIgt~~d~~~-An~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v-~~s~ig~~ 427 (526)
.+.-+++|..-+. +...+.........++|++.+.+++.+++.+.| +.+.|. ++.||++|.|+. +.| .+++||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 3566778875443 333332222223457777777777777777777 445443 366777777763 444 57888888
Q ss_pred cEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe---------------------ceEECCCCEECCC
Q 043870 428 SRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK---------------------NCIIDKNAKIGKN 486 (526)
Q Consensus 428 ~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~---------------------~~iI~~~~~Ig~~ 486 (526)
|.|+++|+|.+.+++|++ +.|+++|.|. +++|++++.||++
T Consensus 146 ~~I~~~~~I~~~~~IG~~------------------~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~ 207 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKN------------------VIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGAN 207 (324)
T ss_pred ceECCCcEECCCCEECCC------------------CEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCC
Confidence 888888888877777775 7777777773 4889999999999
Q ss_pred cEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 487 VIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 487 ~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
++|.... .+.+++++++.|...+ .|++|+.||++++|
T Consensus 208 ~~I~r~~--~~~t~Ig~~~~I~n~v-~I~~~v~IG~~~~I 244 (324)
T TIGR01853 208 TTIDRGA--FDDTIIGEGTKIDNLV-QIAHNCRIGENCII 244 (324)
T ss_pred CEEecCC--cCcceecCCcEEccCc-EECCCCEECCCcEE
Confidence 9997653 4678899999998875 56888888888764
No 125
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.04 E-value=8.2e-10 Score=118.87 Aligned_cols=118 Identities=14% Similarity=0.214 Sum_probs=74.9
Q ss_pred CCCCCCCCeee-cCeeEee-eEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcce
Q 043870 388 TSPRFLPPSKI-EKCRVQD-SIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPV 464 (526)
Q Consensus 388 ~~~~~~~~~~i-~~~~i~~-s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 464 (526)
+.+.+++.+.| +++.|.+ +.||++|.|++ |.|.+++||++|+|+++|.|.++++..+ +
T Consensus 260 ~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~-------------------~ 320 (451)
T TIGR01173 260 GTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEG-------------------C 320 (451)
T ss_pred CccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCC-------------------c
Confidence 33445555666 4555553 78888888874 6678899999999998888877655444 6
Q ss_pred EECCCCEEe-ceEECCCCEECCCcEEccCCCcC-----------CccccCCCeEEccCc------------EEECCCCEE
Q 043870 465 GIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVE-----------EAERPSDGFYIRSGI------------TVVLKNTTI 520 (526)
Q Consensus 465 ~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~-----------~~~~~~~~~~I~~g~------------~~i~~~~~i 520 (526)
.||+++.|. +++|+++|+||+++.+.++ .+. ....+++++.|+.++ ++||+++.|
T Consensus 321 ~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~-~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~i 399 (451)
T TIGR01173 321 DVGPFARLRPGSVLGAGVHIGNFVETKNA-RIGKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFI 399 (451)
T ss_pred EECCeeEECCCCEECCCcEEccceeecCc-EECCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEE
Confidence 777777776 3666666666665554422 111 124455555555443 456777777
Q ss_pred CCCcc
Q 043870 521 KDGTI 525 (526)
Q Consensus 521 ~~gt~ 525 (526)
|.|++
T Consensus 400 g~~~~ 404 (451)
T TIGR01173 400 GSNTQ 404 (451)
T ss_pred CCCCE
Confidence 77664
No 126
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.04 E-value=1.3e-09 Score=118.61 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=96.9
Q ss_pred eeecCChhhHHHhchhh-cCCC---CCccc-----------CCCCCc-ccCCCCCCCCeee-cCeeEee-eEECCCCEEc
Q 043870 354 WEDIGTIKSFFDANLSL-TDKP---PKFHF-----------YDPQKP-IFTSPRFLPPSKI-EKCRVQD-SIISHGCFLR 415 (526)
Q Consensus 354 w~dIgt~~d~~~An~~l-l~~~---~~~~~-----------~~~~~~-i~~~~~~~~~~~i-~~~~i~~-s~Ig~~~~i~ 415 (526)
-+.+.++++|..+|..+ +... ..... .+|.+. +.+.+.+++++.| +++.|.. +.||++|.|+
T Consensus 219 ~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~ 298 (481)
T PRK14358 219 AFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIG 298 (481)
T ss_pred EEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEEC
Confidence 34567788888888655 2211 11111 123222 2445556666767 4566654 7789999998
Q ss_pred c-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccCC
Q 043870 416 E-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKD 493 (526)
Q Consensus 416 ~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~ 493 (526)
. |.|++|+||++|.|++++.|.+++ +|.+ +.||.++.|+ +++|+++++|++++.|.++.
T Consensus 299 ~~~~i~~svI~~~~~I~~~~~i~~~~-ig~~------------------~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~ 359 (481)
T PRK14358 299 AYSVVTDSVLHEGAVIKPHSVLEGAE-VGAG------------------SDVGPFARLRPGTVLGEGVHIGNFVETKNAR 359 (481)
T ss_pred CCCEEeeeEECCCCEEeecceecCCe-EeCc------------------eEECCccEEcCCcEECCCCEECCCEEECCce
Confidence 4 778999999999999999997754 5544 6788887776 57778888888766654321
Q ss_pred -----Cc-----CCccccCCCeEEccCc------------EEECCCCEECCCccC
Q 043870 494 -----GV-----EEAERPSDGFYIRSGI------------TVVLKNTTIKDGTII 526 (526)
Q Consensus 494 -----~v-----~~~~~~~~~~~I~~g~------------~~i~~~~~i~~gt~i 526 (526)
.+ .+..++++++.|+.++ ++||+++.||++++|
T Consensus 360 i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i 414 (481)
T PRK14358 360 LDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTL 414 (481)
T ss_pred ecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEE
Confidence 11 1234445555555443 366777777777653
No 127
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.04 E-value=1.7e-09 Score=106.94 Aligned_cols=83 Identities=13% Similarity=0.154 Sum_probs=45.9
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEEC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig 484 (526)
+.||+||.|.. +++||.++.||++|.|..++.++... +. -...|+.||++|.|. +|.|..+++||
T Consensus 130 a~IGeGt~I~~----~a~IG~~v~IG~nv~I~~g~~IgG~~-ep---------~~~~~ViIgDnv~IGa~a~I~~GV~IG 195 (269)
T TIGR00965 130 AYVDEGTMVDT----WATVGSCAQIGKNVHLSGGVGIGGVL-EP---------LQANPTIIEDNCFIGARSEIVEGVIVE 195 (269)
T ss_pred cEECCCCEECC----CcEECCCCEECCCCEEcCCcccCCCc-cc---------CCCCCeEECCCCEECCCCEEcCCCEEC
Confidence 44555555544 46666666666666666655554310 00 011346777777766 46666666666
Q ss_pred CCcEEccCCCcCCccccC
Q 043870 485 KNVIIANKDGVEEAERPS 502 (526)
Q Consensus 485 ~~~~i~~~~~v~~~~~~~ 502 (526)
++++|+..+.+....++.
T Consensus 196 ~gavIGaGavI~~~~~I~ 213 (269)
T TIGR00965 196 EGSVISMGVFIGQSTKIY 213 (269)
T ss_pred CCCEEeCCCEECCCCEEe
Confidence 666666655555444443
No 128
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.04 E-value=8.7e-10 Score=119.02 Aligned_cols=118 Identities=17% Similarity=0.322 Sum_probs=81.5
Q ss_pred CCCCCCCCeeec-CeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcce
Q 043870 388 TSPRFLPPSKIE-KCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPV 464 (526)
Q Consensus 388 ~~~~~~~~~~i~-~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 464 (526)
+.+.+.+++.|. .+.+. ++.||++|.|+. |.|++++||++|+|+++|.|.++++..+ +
T Consensus 268 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~-------------------~ 328 (456)
T PRK14356 268 PRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG-------------------C 328 (456)
T ss_pred CCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc-------------------c
Confidence 344555555552 34443 388999999984 7789999999999999999977766655 7
Q ss_pred EECCCCEEe-ceEECCCCEECCCcEEccCCCcCC-----------ccccCCCeEEccCc------------EEECCCCEE
Q 043870 465 GIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEE-----------AERPSDGFYIRSGI------------TVVLKNTTI 520 (526)
Q Consensus 465 ~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~-----------~~~~~~~~~I~~g~------------~~i~~~~~i 520 (526)
.||+++.|. +++|+++|+||.++.+.++. +.. +..+++++.|+.++ ++||+++.|
T Consensus 329 ~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~-i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~i 407 (456)
T PRK14356 329 SVGPYARLRPGAVLEEGARVGNFVEMKKAV-LGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFI 407 (456)
T ss_pred EECCceEECCCCEECCCCEecCCceeeeeE-ecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEE
Confidence 899999997 68999999999888775532 222 23445555555442 245666666
Q ss_pred CCCcc
Q 043870 521 KDGTI 525 (526)
Q Consensus 521 ~~gt~ 525 (526)
|.+++
T Consensus 408 g~~~~ 412 (456)
T PRK14356 408 GSNTA 412 (456)
T ss_pred cCCCE
Confidence 65554
No 129
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.02 E-value=2.2e-09 Score=87.05 Aligned_cols=65 Identities=31% Similarity=0.553 Sum_probs=50.7
Q ss_pred ECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCC
Q 043870 408 ISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN 486 (526)
Q Consensus 408 Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 486 (526)
||++|.|+ .+.+.+++||++++|++++.|.+++++.. +.||+++.|.+++|++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 56666665 35566688888888888888888877766 78888888888888888888888
Q ss_pred cEEcc
Q 043870 487 VIIAN 491 (526)
Q Consensus 487 ~~i~~ 491 (526)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd03356 63 VRVVN 67 (79)
T ss_pred CEEcC
Confidence 88765
No 130
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.02 E-value=2.5e-09 Score=99.82 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=39.2
Q ss_pred eEECCCcEECCCCEEec----eEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEECCCcEEccCCCcC
Q 043870 422 SIVGIRSRLEYGVELKD----TMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKIGKNVIIANKDGVE 496 (526)
Q Consensus 422 s~ig~~~~I~~~~~i~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~~~v~ 496 (526)
+.||+++.|++++.|.. .+.+|++ +.|+.++.|.. ++|+++|.||.++.|.+
T Consensus 43 v~IG~~~~I~~~~~i~~~~~~~v~Ig~~------------------~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~----- 99 (167)
T cd00710 43 IIIGANVNIQDGVVIHALEGYSVWIGKN------------------VSIAHGAIVHGPAYIGDNCFIGFRSVVFN----- 99 (167)
T ss_pred EEECCCCEECCCeEEEecCCCCEEECCC------------------ceECCCCEEeCCEEECCCCEECCCCEEEC-----
Confidence 55666666666666632 2333433 44555555543 56666666666665542
Q ss_pred CccccCCCeEEccCcE----EECCCCEECCCcc
Q 043870 497 EAERPSDGFYIRSGIT----VVLKNTTIKDGTI 525 (526)
Q Consensus 497 ~~~~~~~~~~I~~g~~----~i~~~~~i~~gt~ 525 (526)
..++++++|+.++. .|++++.|+++++
T Consensus 100 --~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~~~ 130 (167)
T cd00710 100 --AKVGDNCVIGHNAVVDGVEIPPGRYVPAGAV 130 (167)
T ss_pred --CEECCCCEEcCCCEEeCCEeCCCCEECCCCE
Confidence 23444444444332 3345555555443
No 131
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.00 E-value=1.2e-09 Score=102.98 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=22.3
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
+.||++|.|. +|+|+.++.||++|.|+....+....++++++.|+.++++
T Consensus 133 ~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v 183 (197)
T cd03360 133 CVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVV 183 (197)
T ss_pred CEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence 3444444442 3444444444444444433333333445555555555443
No 132
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=98.99 E-value=2.8e-09 Score=110.96 Aligned_cols=169 Identities=18% Similarity=0.171 Sum_probs=76.1
Q ss_pred cCChhh-HHHhchhhcCCC--CCcccCCCCCcccCCCCCCCCeee-cCeeEee-eEECCCCEEcc-eee-eceEECCCcE
Q 043870 357 IGTIKS-FFDANLSLTDKP--PKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQD-SIISHGCFLRE-CSV-EHSIVGIRSR 429 (526)
Q Consensus 357 Igt~~d-~~~An~~ll~~~--~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~-s~Ig~~~~i~~-~~v-~~s~ig~~~~ 429 (526)
+++|.. |.++...+..+. .....++|.+.+.+++.+++++.| +++.|.. +.||++|.|+. +.| .++.||++|.
T Consensus 77 ~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~ 156 (343)
T PRK00892 77 VKNPYLAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCR 156 (343)
T ss_pred eCCHHHHHHHHHHHhccccccccCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCE
Confidence 455543 444444443222 223456677766666666666666 3344432 45555555542 333 3455555555
Q ss_pred ECCCCEEeceEEECCcc-cchhHHHHH-----HhhCCC-------cceEECCCCEEe-ceEEC----CCCEECCCcEEcc
Q 043870 430 LEYGVELKDTMMMGADY-YQTEAEIAA-----LLAEGK-------VPVGIGRDTKIK-NCIID----KNAKIGKNVIIAN 491 (526)
Q Consensus 430 I~~~~~i~~~v~~~~~~-~~~~~~~~~-----~~~~~~-------~~~~Ig~~~~i~-~~iI~----~~~~Ig~~~~i~~ 491 (526)
|+++|+|.+++.+|++. +..++.+.. .-..|. ..+.||+++.|. +|.|+ .+++||+++.|.|
T Consensus 157 I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~ 236 (343)
T PRK00892 157 LHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDN 236 (343)
T ss_pred eCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCccccceeCCCCEEeC
Confidence 55555554444443330 000000000 000000 014445554444 23333 2344445555555
Q ss_pred CCCcCCccccCCCeEEccCc-----EEECCCCEECCCcc
Q 043870 492 KDGVEEAERPSDGFYIRSGI-----TVVLKNTTIKDGTI 525 (526)
Q Consensus 492 ~~~v~~~~~~~~~~~I~~g~-----~~i~~~~~i~~gt~ 525 (526)
...+..++++++++.|.+++ ++||+++.|+.++.
T Consensus 237 ~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~ 275 (343)
T PRK00892 237 LVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVG 275 (343)
T ss_pred CeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCE
Confidence 55555555666666665433 35566666666554
No 133
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.98 E-value=1.1e-08 Score=94.06 Aligned_cols=95 Identities=22% Similarity=0.372 Sum_probs=65.2
Q ss_pred eeEECCCCEEcc-eeee----ceEECCCcEECCCCEEece----EEECCcccchhHHHHHHhhCCCcceEECCCCEEece
Q 043870 405 DSIISHGCFLRE-CSVE----HSIVGIRSRLEYGVELKDT----MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNC 475 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v~----~s~ig~~~~I~~~~~i~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ 475 (526)
+..||++|.|++ +.|. .++||+++.|+++|+|.++ ++++++ +.|+.+|.|.++
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 78 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN------------------VTVGHGAVLHGC 78 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC------------------cEECCCcEEeee
Confidence 356677777764 4343 3689999999999999875 566665 788888888888
Q ss_pred EECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCc
Q 043870 476 IIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGT 524 (526)
Q Consensus 476 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt 524 (526)
+|+.++.||.++.+.... +++++++|+.++++ .++..|++++
T Consensus 79 ~Ig~~~~Ig~~~~v~~~~------~ig~~~~ig~~~~v-~~~~~i~~~~ 120 (153)
T cd04645 79 TIGDNCLIGMGAIILDGA------VIGKGSIVAAGSLV-PPGKVIPPGS 120 (153)
T ss_pred EECCCCEECCCCEEcCCC------EECCCCEECCCCEE-CCCCEeCCCC
Confidence 888888888888886443 45555666555432 4555555444
No 134
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.98 E-value=1e-08 Score=94.44 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=55.2
Q ss_pred eEECCCCEEcc-eeeec----eEECCCcEECCCCEEece----EEECCcccchhHHHHHHhhCCCcceEECCCCEEeceE
Q 043870 406 SIISHGCFLRE-CSVEH----SIVGIRSRLEYGVELKDT----MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCI 476 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v~~----s~ig~~~~I~~~~~i~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~i 476 (526)
+.||++|.|++ +.|.. ++||+++.|+++|.|... ++++++ +.|++++.|.+++
T Consensus 19 v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~~ 80 (154)
T cd04650 19 VVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY------------------VTIGHNAVVHGAK 80 (154)
T ss_pred EEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC------------------CEECCCcEEECcE
Confidence 55566666653 33433 588888888888888763 556654 7888888888888
Q ss_pred ECCCCEECCCcEEccCCCcCCccccCCCeEEccC
Q 043870 477 IDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSG 510 (526)
Q Consensus 477 I~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g 510 (526)
|+++|.||.++++.+.. +++++++|+.+
T Consensus 81 Ig~~~~Ig~~~~i~~~~------~Ig~~~~vg~~ 108 (154)
T cd04650 81 VGNYVIVGMGAILLNGA------KIGDHVIIGAG 108 (154)
T ss_pred ECCCCEEcCCCEEeCCC------EECCCCEECCC
Confidence 88888888888886554 34444444444
No 135
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=98.98 E-value=3.1e-09 Score=105.09 Aligned_cols=101 Identities=21% Similarity=0.239 Sum_probs=65.0
Q ss_pred CCCCCCCeeecCeeEeeeEECCCCEEcceee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEEC
Q 043870 389 SPRFLPPSKIEKCRVQDSIISHGCFLRECSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIG 467 (526)
Q Consensus 389 ~~~~~~~~~i~~~~i~~s~Ig~~~~i~~~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig 467 (526)
..|+.|++.+.. ++.||++|+|..+.| .++.||+++.|+.+++|+.++++|++ +.|+
T Consensus 100 ~~rv~p~a~i~~----ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~n------------------v~I~ 157 (269)
T TIGR00965 100 GFRVVPGAAVRQ----GAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLS 157 (269)
T ss_pred CEEECCCcEECC----CcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCC------------------CEEc
Confidence 455666665533 467777777765444 34667777777777777777777665 6666
Q ss_pred CCCEEe---------ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCc
Q 043870 468 RDTKIK---------NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGI 511 (526)
Q Consensus 468 ~~~~i~---------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~ 511 (526)
.++.|. +++|++||.||.+++|.....+.+.+.++.|++|+.++
T Consensus 158 ~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~ 210 (269)
T TIGR00965 158 GGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQST 210 (269)
T ss_pred CCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCC
Confidence 666663 46778888888887777665555555555555554443
No 136
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.97 E-value=2e-09 Score=115.97 Aligned_cols=119 Identities=14% Similarity=0.219 Sum_probs=76.5
Q ss_pred cCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcc
Q 043870 387 FTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVP 463 (526)
Q Consensus 387 ~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~ 463 (526)
.+.+.+++.+.| +.+.|. ++.||++|.|+. +.|.+|+||++|+|. ++.+.++++.++
T Consensus 253 ~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~------------------- 312 (448)
T PRK14357 253 HYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDD------------------- 312 (448)
T ss_pred ccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCC-------------------
Confidence 334444445544 344444 478888888874 667778888888885 457777777666
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccC-----CCcC-----CccccCCCeEEccCc------------EEECCCCEE
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANK-----DGVE-----EAERPSDGFYIRSGI------------TVVLKNTTI 520 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~-----~~v~-----~~~~~~~~~~I~~g~------------~~i~~~~~i 520 (526)
+.||+++.|+ +++|+++++||+++.+.++ ..+. +...+++++.|+.|+ ++||+++.|
T Consensus 313 ~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~i 392 (448)
T PRK14357 313 VSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFI 392 (448)
T ss_pred cEECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEE
Confidence 6788888886 4888888888887765432 1111 234566677776543 356777777
Q ss_pred CCCcc
Q 043870 521 KDGTI 525 (526)
Q Consensus 521 ~~gt~ 525 (526)
|.+++
T Consensus 393 g~~~~ 397 (448)
T PRK14357 393 GSNSS 397 (448)
T ss_pred CCCCE
Confidence 76654
No 137
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.96 E-value=5e-09 Score=96.69 Aligned_cols=95 Identities=26% Similarity=0.435 Sum_probs=55.9
Q ss_pred eeEECCCCEEccee-----eeceEECCCcEECCCCEEec----eEEECCcccchhHHHHHHhhCCCcceEECCCCEEece
Q 043870 405 DSIISHGCFLRECS-----VEHSIVGIRSRLEYGVELKD----TMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNC 475 (526)
Q Consensus 405 ~s~Ig~~~~i~~~~-----v~~s~ig~~~~I~~~~~i~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~ 475 (526)
|..||+++.|.... .+...||.++.|.+||.|+. .+.+|++ +.||.++.|..|
T Consensus 29 dV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~------------------vtIGH~aivHGc 90 (176)
T COG0663 29 DVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDD------------------VTIGHGAVVHGC 90 (176)
T ss_pred eEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCC------------------cEEcCccEEEEe
Confidence 34444444444322 25567777777777777754 3455554 566666666677
Q ss_pred EECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCc
Q 043870 476 IIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGT 524 (526)
Q Consensus 476 iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt 524 (526)
.|+++|.||-|++|.|.+ ++|++++|+.|+.+ -++-.+++++
T Consensus 91 ~Ig~~~lIGmgA~vldga------~IG~~~iVgAgalV-~~~k~~p~~~ 132 (176)
T COG0663 91 TIGDNVLIGMGATVLDGA------VIGDGSIVGAGALV-TPGKEIPGGS 132 (176)
T ss_pred EECCCcEEecCceEeCCc------EECCCcEEccCCcc-cCCcCCCCCe
Confidence 777777777777777653 45556666655443 4444444443
No 138
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.96 E-value=2.1e-09 Score=116.92 Aligned_cols=110 Identities=14% Similarity=0.113 Sum_probs=56.1
Q ss_pred eEeeeEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCC--cceEECCCCEEe-ceE
Q 043870 402 RVQDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGK--VPVGIGRDTKIK-NCI 476 (526)
Q Consensus 402 ~i~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~--~~~~Ig~~~~i~-~~i 476 (526)
.+.+++|+++|.|+. +.+ .+++||.++.|+.+++++++++..+.. +..+. ..+.||++|.|. +|+
T Consensus 319 ~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~----------i~~~~~i~~~~Ig~~~~IG~~~~ 388 (482)
T PRK14352 319 HGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTK----------VPHLTYVGDADIGEHSNIGASSV 388 (482)
T ss_pred eeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcE----------EccCceecccEECCCcEECCCcE
Confidence 344567777777764 445 367777777777777666655544321 11110 123455555554 233
Q ss_pred ECCCCE-ECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECC
Q 043870 477 IDKNAK-IGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKD 522 (526)
Q Consensus 477 I~~~~~-Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~ 522 (526)
+..... -+.+++|++...+.....+..++.|++++ +|+.+++|-.
T Consensus 389 i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~-~igags~v~~ 434 (482)
T PRK14352 389 FVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGA-YTGAGTVIRE 434 (482)
T ss_pred EeccccccCCCCeECCCcEECCCCEEeCCCEECCCc-EECCCCEEcC
Confidence 321000 00123333333333445677777888774 4477766543
No 139
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.96 E-value=4.3e-08 Score=100.80 Aligned_cols=217 Identities=18% Similarity=0.240 Sum_probs=129.7
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeC---CcchhHHHHHHHHHhcC-----------CcEEEEEec-cChhHHHH
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIG---GCYRLIDVPMSNCINSG-----------IKKIYILTQ-FNSQSLNR 155 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~---g~~pLI~~~l~~l~~~g-----------i~~I~Iv~~-~~~~~l~~ 155 (526)
.++.+||||||.||||. ...||+|+||+ |+ |++++.++++...+ .-.++|+++ +..+.+.+
T Consensus 14 ~~va~viLaGG~GTRLg---~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~ 89 (323)
T cd04193 14 GKVAVLLLAGGQGTRLG---FDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRK 89 (323)
T ss_pred CCEEEEEECCCcccccC---CCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHH
Confidence 36899999999999994 77899999998 68 99999999998742 124567777 77888999
Q ss_pred HhhhcccCCCC---cc-cCCCeEEEEeccccc----CcCCCccccChHHHHHHHHH--HhhhhccCCCCeEEEEcCCe-e
Q 043870 156 HISRTYNLGDG---MN-FGDGFVEVLAATQRQ----GESGKKWFQGTADAVRQFIW--MFEDAKHRNIENILILSGDH-L 224 (526)
Q Consensus 156 ~l~~~~~~~~~---~~-~~~~~v~vl~~~~~~----~~~~~~~~~Gt~~al~~~~~--~i~~~~~~~~e~~lil~gD~-l 224 (526)
++.+...|+-. +. |....+..+...... ...-...|.|.++-...... .+++...+..+.+.+.+.|. +
T Consensus 90 ~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L 169 (323)
T cd04193 90 FFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNIL 169 (323)
T ss_pred HHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccc
Confidence 99864334321 11 111112222110000 00001224677665554432 34444457889999999999 4
Q ss_pred cccCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEE-cCCCCeeeeeccCCccccccccccccccccchhhhcCCCc
Q 043870 225 YRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKI-DETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPY 303 (526)
Q Consensus 225 ~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~-d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~ 303 (526)
...--..++-.+.++++++.+-+.+..... ..-|.+.. |..-++.++.|-|..... ...-+..+ ..+
T Consensus 170 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~-~~~~~g~l----------~f~ 237 (323)
T cd04193 170 VKVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAE-KRDADGEL----------QYN 237 (323)
T ss_pred ccccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHh-ccCcCCcE----------ecc
Confidence 444445667777888999888776654322 23454443 433456777776554211 00000000 123
Q ss_pred eeeeeEEEEcHHHHHHHHHh
Q 043870 304 IASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 304 l~~~Giyif~~~~l~~ll~~ 323 (526)
..++.+.+|+-++|.++++.
T Consensus 238 ~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 238 AGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred cchHhhheeCHHHHHHHHhh
Confidence 34556778888888776543
No 140
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.96 E-value=6.5e-08 Score=97.01 Aligned_cols=213 Identities=15% Similarity=0.174 Sum_probs=128.6
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeC---CcchhHHHHHHHHHh--------cCCcEEEEEeccChhHHHHHhhhccc
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIG---GCYRLIDVPMSNCIN--------SGIKKIYILTQFNSQSLNRHISRTYN 162 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~---g~~pLI~~~l~~l~~--------~gi~~I~Iv~~~~~~~l~~~l~~~~~ 162 (526)
.+||||||.||||+ .+.||+|+||+ |+ |+|++.++++.. .+|..+++...+..+.+.+++.+..
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~- 76 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN- 76 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC-
Confidence 58999999999996 78899999999 99 999999999986 3477777778888888999998533
Q ss_pred CCCC--cccCCCeEEEEecccc--cCcCC--CccccChHHHHHHHH--HHhhhhccCCCCeEEEEcCCe-eccc-CHHHH
Q 043870 163 LGDG--MNFGDGFVEVLAATQR--QGESG--KKWFQGTADAVRQFI--WMFEDAKHRNIENILILSGDH-LYRM-DYMDF 232 (526)
Q Consensus 163 ~~~~--~~~~~~~v~vl~~~~~--~~~~~--~~~~~Gt~~al~~~~--~~i~~~~~~~~e~~lil~gD~-l~~~-dl~~l 232 (526)
+..+ ..|..+.+..+..... ..+.. ...+-|.++.+.... ..++..+.+..+.+.+.+.|. +... |. .+
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP-~~ 155 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADP-LF 155 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCH-HH
Confidence 2111 1111111111111100 00001 122457766655433 234444446788999999999 4455 43 35
Q ss_pred HHHHHHcCCcEEEEEEEccCCcCCCceEEEEcCCCC--eeeeeccCCcccccc---cc-ccccccccchhhhcCCCceee
Q 043870 233 VQHHINSGGDISVCCLPVDESRASDFGLMKIDETGR--IRQFLEKPKGENLRS---MQ-IDTTALGLSAQEARNFPYIAS 306 (526)
Q Consensus 233 l~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~~g~--V~~~~eKp~~~~~~~---~~-~~~~~l~~s~~~~~~~~~l~~ 306 (526)
+-.+...++++.+-+.+....+ ..=|++...++|+ +.++.+-|....... .. -+.+. ......+
T Consensus 156 lG~~~~~~~~~~~kvv~K~~~d-~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~---------~~~~~~n 225 (266)
T cd04180 156 IGIAIQNRKAINQKVVPKTRNE-ESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDIDD---------APFFLFN 225 (266)
T ss_pred HHHHHHcCCCEEEEEEECCCCC-CeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCCc---------eeeccce
Confidence 5566677788777666554422 2335555432354 677766554321000 00 00111 1456789
Q ss_pred eeEEEEcHHHHHHHHH
Q 043870 307 MGIYLFKTEVLLKVLR 322 (526)
Q Consensus 307 ~Giyif~~~~l~~ll~ 322 (526)
+...+|+-+.+.+.++
T Consensus 226 ~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 226 TNNLINFLVEFKDRVD 241 (266)
T ss_pred EEEEEEEHHHHHHHHH
Confidence 9999999998877664
No 141
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=98.95 E-value=6e-09 Score=96.01 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=28.2
Q ss_pred CCCCCcccCCCCCCCCeee-cCeeEee----eEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECC
Q 043870 380 YDPQKPIFTSPRFLPPSKI-EKCRVQD----SIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i-~~~~i~~----s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~ 444 (526)
+++.+.+...+.+++.+.| +++.+.. +.||++|.|++ |.| +...+.++.|+++|.|...+.+.+
T Consensus 9 i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I-~~~~~~~~~Ig~~~~Ig~~~~i~~ 78 (155)
T cd04745 9 VHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVI-HGFPGQDTVLEENGHIGHGAILHG 78 (155)
T ss_pred ECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEE-eecCCCCeEEcCCCEECCCcEEEC
Confidence 3444444444444444444 3344432 44555555543 222 222234455555555555444443
No 142
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.94 E-value=4.2e-09 Score=113.89 Aligned_cols=70 Identities=14% Similarity=0.265 Sum_probs=50.1
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGK 485 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~ 485 (526)
+.|+++|.|++ +++||++|.|+++|.|.++++..+ +.|+.++.|.+|+|++++.||+
T Consensus 275 ~~I~~~~~I~~----~~~Ig~~~~I~~~~~I~~~~Ig~~-------------------~~I~~~~~i~~~~i~~~~~ig~ 331 (459)
T PRK14355 275 TTIYPGVCISG----DTRIGEGCTIEQGVVIKGCRIGDD-------------------VTVKAGSVLEDSVVGDDVAIGP 331 (459)
T ss_pred CEEeCCcEEeC----CCEECCCCEECCCCEEeCCEEcCC-------------------CEECCCeEEeCCEECCCCEECC
Confidence 45555555543 789999999999999988665555 7888888888888888877776
Q ss_pred CcEEccCCCcCCc
Q 043870 486 NVIIANKDGVEEA 498 (526)
Q Consensus 486 ~~~i~~~~~v~~~ 498 (526)
++++.....+.++
T Consensus 332 ~~~i~~~~~i~~~ 344 (459)
T PRK14355 332 MAHLRPGTELSAH 344 (459)
T ss_pred CCEECCCCEeCCC
Confidence 6666544333333
No 143
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.6e-09 Score=115.71 Aligned_cols=94 Identities=14% Similarity=0.293 Sum_probs=80.4
Q ss_pred CCcccCCCCCCCCeee-cCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCC
Q 043870 383 QKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEG 460 (526)
Q Consensus 383 ~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~ 460 (526)
++.+..+..++.+++| .+++|.+|.||.||.|+ ++.|++|.||.+|+||+||+|.++++.++
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~---------------- 390 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDD---------------- 390 (673)
T ss_pred hccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecC----------------
Confidence 4445556667777777 57899999999999999 58889999999999999999999998887
Q ss_pred CcceEECCCCEEe-ceEECCCCEECCCcEEccCCCc
Q 043870 461 KVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGV 495 (526)
Q Consensus 461 ~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v 495 (526)
+.|++||.+. .|+|+-++.+|++-++.....+
T Consensus 391 ---v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 391 ---VKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred ---cEeCCCcccCCCcEEeeeeEeCCCccccccccc
Confidence 8999999996 5999999999999888766544
No 144
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.92 E-value=3.3e-09 Score=114.56 Aligned_cols=119 Identities=13% Similarity=0.213 Sum_probs=80.8
Q ss_pred CCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcce
Q 043870 388 TSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPV 464 (526)
Q Consensus 388 ~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 464 (526)
....+++++.| .+|.|. ++.||++|.|++ |.|.+|+||++|.|+++|.|.++++..+ +
T Consensus 264 ~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~-------------------~ 324 (456)
T PRK09451 264 GTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAA-------------------C 324 (456)
T ss_pred CcEEECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCC-------------------c
Confidence 33445666777 456665 488999999984 7778999999999999999987654333 6
Q ss_pred EECCCCEEe-ceEECCCCEECCCcEEccC-----------CCcCCccccCCCeEEccCc------------EEECCCCEE
Q 043870 465 GIGRDTKIK-NCIIDKNAKIGKNVIIANK-----------DGVEEAERPSDGFYIRSGI------------TVVLKNTTI 520 (526)
Q Consensus 465 ~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~-----------~~v~~~~~~~~~~~I~~g~------------~~i~~~~~i 520 (526)
.||+++.|. ++.|+.+++||+++.|.++ ..+ +++.+|+++.|++++ ++||+++.|
T Consensus 325 ~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~-g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~i 403 (456)
T PRK09451 325 TIGPFARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYL-GDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFV 403 (456)
T ss_pred EecCceEEeCCCEECCCceeccceeeeceeeCCCCccCccccc-cccEECCCCEEcCCeEEecccCcccCCCEECCCcEE
Confidence 777777776 5666666666666554322 111 344666777777664 357788888
Q ss_pred CCCccC
Q 043870 521 KDGTII 526 (526)
Q Consensus 521 ~~gt~i 526 (526)
|.+++|
T Consensus 404 g~~~~i 409 (456)
T PRK09451 404 GSDTQL 409 (456)
T ss_pred CCCCEE
Confidence 777653
No 145
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.92 E-value=9.7e-09 Score=98.84 Aligned_cols=146 Identities=18% Similarity=0.179 Sum_probs=70.5
Q ss_pred CCCCCcccCCCCCCCCeee-cCeeEee-eEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHH
Q 043870 380 YDPQKPIFTSPRFLPPSKI-EKCRVQD-SIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAA 455 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i-~~~~i~~-s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~ 455 (526)
+++.+.+.+.+.+.+++.| +++.|.. +.|++++.|++ |.| .++.|+.++.|+++|.|...+.++.+..+... ...
T Consensus 4 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~-~~~ 82 (205)
T cd03352 4 IGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAP-DGG 82 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEe-cCC
Confidence 4455666666666666666 3444433 55556666653 344 45666666666666666665555532111000 000
Q ss_pred HhhC--CCcceEECCCCEEe-ceEEC----CCCEECCCcEEccCCCcCCccccCCCeEEccCc-----EEECCCCEECCC
Q 043870 456 LLAE--GKVPVGIGRDTKIK-NCIID----KNAKIGKNVIIANKDGVEEAERPSDGFYIRSGI-----TVVLKNTTIKDG 523 (526)
Q Consensus 456 ~~~~--~~~~~~Ig~~~~i~-~~iI~----~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~-----~~i~~~~~i~~g 523 (526)
...+ -...+.||+++.|. +|+|. .++.||+++.|.+...+....+++++++|..++ +.|++++.|+++
T Consensus 83 ~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~ 162 (205)
T cd03352 83 GWVKIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQ 162 (205)
T ss_pred cEEEcCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCC
Confidence 0000 00125555555554 23332 233444444444443344444555555554332 356777777777
Q ss_pred ccC
Q 043870 524 TII 526 (526)
Q Consensus 524 t~i 526 (526)
++|
T Consensus 163 ~~v 165 (205)
T cd03352 163 VGI 165 (205)
T ss_pred CEE
Confidence 654
No 146
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.90 E-value=7.8e-09 Score=98.87 Aligned_cols=96 Identities=15% Similarity=0.222 Sum_probs=54.9
Q ss_pred EECCCCEEcceeeeceEECCCcEECCCCEEece---EEECCcccchhHHHHHHhhCCCcceEECCCCEEe-----ceEEC
Q 043870 407 IISHGCFLRECSVEHSIVGIRSRLEYGVELKDT---MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-----NCIID 478 (526)
Q Consensus 407 ~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----~~iI~ 478 (526)
.|++++.|.. +++||++|.|+++|.|.++ ++++.+ +.||++|.|. +|+|+
T Consensus 18 ~I~~~a~I~g----~V~IG~~~~I~~~avIrgd~~~i~Ig~~------------------~~Ig~~~~I~~~~~~~siIg 75 (196)
T PRK13627 18 FVHPSAVLIG----DVIVGAGVYIGPLASLRGDYGRLIVQAG------------------ANLQDGCIMHGYCDTDTIVG 75 (196)
T ss_pred EECCCCEEEC----ceEECCCCEECCCCEEecCCccEEECCC------------------CEECCCCEEeCCCCCCCEEC
Confidence 3444444433 5666777777777766553 455554 6667777664 35666
Q ss_pred CCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 479 KNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 479 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
+++.||.++++.++ .+.+...+|.++.|..|+ +||+++.|++|++|
T Consensus 76 ~~~~Ig~~a~i~g~-vIG~~v~IG~ga~V~~g~-~IG~~s~Vgags~V 121 (196)
T PRK13627 76 ENGHIGHGAILHGC-VIGRDALVGMNSVIMDGA-VIGEESIVAAMSFV 121 (196)
T ss_pred CCCEECCCcEEeeE-EECCCCEECcCCccCCCc-EECCCCEEcCCCEE
Confidence 66666666666543 244444444444444442 45666666666653
No 147
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.90 E-value=8.7e-09 Score=83.50 Aligned_cols=75 Identities=17% Similarity=0.316 Sum_probs=64.3
Q ss_pred CCCCeee-cCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCC
Q 043870 392 FLPPSKI-EKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRD 469 (526)
Q Consensus 392 ~~~~~~i-~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~ 469 (526)
+++.+.| +++.+.++.|+++|.|+ .+.+++++|++++.|+++|.|.+++++.+ +.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCC
Confidence 4566677 46777789999999997 47889999999999999999999887766 799999
Q ss_pred CEEec-eEECCCCEECC
Q 043870 470 TKIKN-CIIDKNAKIGK 485 (526)
Q Consensus 470 ~~i~~-~iI~~~~~Ig~ 485 (526)
+.|.+ ++|+++++|++
T Consensus 63 ~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 63 VRVVNLCIIGDDVVVED 79 (79)
T ss_pred CEEcCCeEECCCeEECc
Confidence 99988 89888888874
No 148
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.90 E-value=1.1e-08 Score=92.50 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=60.2
Q ss_pred CCCCcccCCCCCCCCeeec-CeeEe-eeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhh
Q 043870 381 DPQKPIFTSPRFLPPSKIE-KCRVQ-DSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLA 458 (526)
Q Consensus 381 ~~~~~i~~~~~~~~~~~i~-~~~i~-~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~ 458 (526)
+|.+.+...+.+++.+.|. .+.+. ++.|+++|+|.. ++.|+.+++|+++|.|...+.++.....
T Consensus 5 ~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~----~~~I~~~~~IG~~~~I~~~~~igg~~~~---------- 70 (139)
T cd03350 5 PPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDS----WATVGSCAQIGKNVHLSAGAVIGGVLEP---------- 70 (139)
T ss_pred CCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcC----CCEECCCCEECCCCEECCCCEECCcccc----------
Confidence 3444444444455544442 22222 355666666654 3444444444444444444444321100
Q ss_pred CCCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE
Q 043870 459 EGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT 512 (526)
Q Consensus 459 ~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~ 512 (526)
.-..++.||+++.|. +++|..+++||++++|+....+.+..+++++ +.|.+
T Consensus 71 ~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~ 122 (139)
T cd03350 71 LQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEI 122 (139)
T ss_pred cccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccE
Confidence 001236777777776 4777777777777777766666666666665 55544
No 149
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=98.90 E-value=1.4e-08 Score=91.74 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=36.8
Q ss_pred ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe---------ceEECCCCEECCCcEEcc
Q 043870 421 HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK---------NCIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~---------~~iI~~~~~Ig~~~~i~~ 491 (526)
++.||+++.|+.++.|.+.+.+|++ +.|+.++.|. +++|+++|.||.+++|..
T Consensus 31 ~~~IG~~~~I~~~~~I~~~~~IG~~------------------~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~ 92 (139)
T cd03350 31 GAYVDEGTMVDSWATVGSCAQIGKN------------------VHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVE 92 (139)
T ss_pred CCEECCCeEEcCCCEECCCCEECCC------------------CEECCCCEECCcccccccCCeEECCCCEECCCCEECC
Confidence 4556666666666665555555554 5566666554 256666666666666654
Q ss_pred CCCcCCccccCCCeEE
Q 043870 492 KDGVEEAERPSDGFYI 507 (526)
Q Consensus 492 ~~~v~~~~~~~~~~~I 507 (526)
...+.+...++.++.|
T Consensus 93 gv~Ig~~~~Ig~g~~V 108 (139)
T cd03350 93 GVIVGKGAVLAAGVVL 108 (139)
T ss_pred CCEECCCCEEcCCCEE
Confidence 4433333333333333
No 150
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.90 E-value=7.7e-09 Score=83.59 Aligned_cols=66 Identities=23% Similarity=0.410 Sum_probs=50.5
Q ss_pred ECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCC
Q 043870 408 ISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN 486 (526)
Q Consensus 408 Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 486 (526)
||++|.|++ +.+.+++||+++.|+++++|.++++..+ +.||+++.|.+++|+++++|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence 455555553 4456788888888888888888777665 78888888888888888888888
Q ss_pred cEEccC
Q 043870 487 VIIANK 492 (526)
Q Consensus 487 ~~i~~~ 492 (526)
+.+...
T Consensus 63 ~~i~~~ 68 (79)
T cd05787 63 CTIPPG 68 (79)
T ss_pred CEECCC
Confidence 777643
No 151
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=98.89 E-value=1.5e-08 Score=94.65 Aligned_cols=96 Identities=14% Similarity=0.245 Sum_probs=77.3
Q ss_pred ccCCCCCcccCCCCCCCCeee-cCeeEee-----eEECCCCEEcc-eeee-----ceEECCCcEECCCCEEeceEEECCc
Q 043870 378 HFYDPQKPIFTSPRFLPPSKI-EKCRVQD-----SIISHGCFLRE-CSVE-----HSIVGIRSRLEYGVELKDTMMMGAD 445 (526)
Q Consensus 378 ~~~~~~~~i~~~~~~~~~~~i-~~~~i~~-----s~Ig~~~~i~~-~~v~-----~s~ig~~~~I~~~~~i~~~v~~~~~ 445 (526)
.+++|.+.+....++++.+.| +++.+.. +.||++|.|++ +.+. .+.||+++.|+.++.|.+.+++|++
T Consensus 9 ~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~ 88 (167)
T cd00710 9 AYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN 88 (167)
T ss_pred eEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC
Confidence 456667777666677777777 4555543 67999999985 4452 5889999999999999988888887
Q ss_pred ccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEcc
Q 043870 446 YYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~ 491 (526)
+.||.++.|.++.|+++|.||.++.|.+
T Consensus 89 ------------------~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~ 116 (167)
T cd00710 89 ------------------CFIGFRSVVFNAKVGDNCVIGHNAVVDG 116 (167)
T ss_pred ------------------CEECCCCEEECCEECCCCEEcCCCEEeC
Confidence 8999999999999999999999999953
No 152
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.88 E-value=1.6e-08 Score=82.45 Aligned_cols=63 Identities=16% Similarity=0.315 Sum_probs=53.2
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGK 485 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~ 485 (526)
+.|++++.|++ +++||++|+|+++|.|++++++.+ +.|++++.|.+|++++++.|++
T Consensus 6 ~~I~~~~~i~~----~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~~ 62 (80)
T cd05824 6 AKIGKTAKIGP----NVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVGR 62 (80)
T ss_pred CEECCCCEECC----CCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEECC
Confidence 45666666655 789999999999999999888877 7999999999999999999999
Q ss_pred CcEEcc
Q 043870 486 NVIIAN 491 (526)
Q Consensus 486 ~~~i~~ 491 (526)
++.+.+
T Consensus 63 ~~~~~~ 68 (80)
T cd05824 63 WTRLEN 68 (80)
T ss_pred CcEEec
Confidence 988855
No 153
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.88 E-value=1.1e-08 Score=92.06 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=13.2
Q ss_pred cccCCCeEEccCcE---EECCCCEECCCcc
Q 043870 499 ERPSDGFYIRSGIT---VVLKNTTIKDGTI 525 (526)
Q Consensus 499 ~~~~~~~~I~~g~~---~i~~~~~i~~gt~ 525 (526)
.+++++++|+.+++ .||++++||+|++
T Consensus 74 V~IG~~~~IG~ga~Igv~IG~~~vIGaGsv 103 (147)
T cd04649 74 ISIGKRCLLGANSGIGISLGDNCIVEAGLY 103 (147)
T ss_pred EEECCCCEECCCCEEeEEECCCCEECCCCE
Confidence 33444444443333 4566666666654
No 154
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.88 E-value=1.5e-08 Score=94.38 Aligned_cols=97 Identities=15% Similarity=0.234 Sum_probs=64.8
Q ss_pred cccCCCCCcccCCCCCCCCeee-cCeeEe----eeEECCCCEEcc-eeeec-----------eEECCCcEECCCCEEece
Q 043870 377 FHFYDPQKPIFTSPRFLPPSKI-EKCRVQ----DSIISHGCFLRE-CSVEH-----------SIVGIRSRLEYGVELKDT 439 (526)
Q Consensus 377 ~~~~~~~~~i~~~~~~~~~~~i-~~~~i~----~s~Ig~~~~i~~-~~v~~-----------s~ig~~~~I~~~~~i~~~ 439 (526)
..++++.+.+.+...+++++.| +++.+. .+.||++|.|++ +.|.+ +.||+++.|..++.|.+
T Consensus 5 ~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~- 83 (164)
T cd04646 5 GAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA- 83 (164)
T ss_pred CcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe-
Confidence 3456677777777778888877 566663 268899999975 55644 35777777777777766
Q ss_pred EEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccC
Q 043870 440 MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 440 v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 492 (526)
+++|++ +.||.++.|. +++|+++|.||++++|...
T Consensus 84 ~~IGd~------------------~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~ 119 (164)
T cd04646 84 LKIGNN------------------NVFESKSFVGKNVIITDGCIIGAGCKLPSS 119 (164)
T ss_pred eEECCC------------------CEEeCCCEECCCCEECCCCEEeCCeEECCC
Confidence 445544 6677766664 4666666666666666543
No 155
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.88 E-value=7.2e-09 Score=111.65 Aligned_cols=153 Identities=15% Similarity=0.222 Sum_probs=89.1
Q ss_pred eeeecCChhhHHHhchhhc----CCC--CCcc--cCCCCCcc-cCC-------CCCCCCeee-cCeeEe-eeEECCCCEE
Q 043870 353 YWEDIGTIKSFFDANLSLT----DKP--PKFH--FYDPQKPI-FTS-------PRFLPPSKI-EKCRVQ-DSIISHGCFL 414 (526)
Q Consensus 353 ~w~dIgt~~d~~~An~~ll----~~~--~~~~--~~~~~~~i-~~~-------~~~~~~~~i-~~~~i~-~s~Ig~~~~i 414 (526)
+|+++++.+.+..++.... +.. .... +.++..++ .+. +.+++++.| .++.|. ++.||++|.|
T Consensus 210 ~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I 289 (450)
T PRK14360 210 MAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRI 289 (450)
T ss_pred eEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEE
Confidence 5666666666655543221 111 1122 34665553 222 223333444 234444 3777888888
Q ss_pred c-ceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccC
Q 043870 415 R-ECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 415 ~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 492 (526)
+ .+.|.+++||++|+|+ ++++.++++..+ +.||.++.|+ +|+|+++|+||+++.|.++
T Consensus 290 ~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~-------------------~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~ 349 (450)
T PRK14360 290 GPGSLIENSQIGENVTVL-YSVVSDSQIGDG-------------------VKIGPYAHLRPEAQIGSNCRIGNFVEIKKS 349 (450)
T ss_pred CCCcEEEEEEEcCCCEEe-eeEEeeccccCC-------------------cEECCCCEECCCCEEeCceEECCCEEEecc
Confidence 6 4667778888888885 456665554443 7888888887 5888888888888877543
Q ss_pred CCcC-----------CccccCCCeEEccCc------------EEECCCCEECCCccC
Q 043870 493 DGVE-----------EAERPSDGFYIRSGI------------TVVLKNTTIKDGTII 526 (526)
Q Consensus 493 ~~v~-----------~~~~~~~~~~I~~g~------------~~i~~~~~i~~gt~i 526 (526)
.+. ++..+++++.|+.++ ++||+++.||++++|
T Consensus 350 -~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i 405 (450)
T PRK14360 350 -QLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVL 405 (450)
T ss_pred -ccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEE
Confidence 121 233455666665543 356777777776653
No 156
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.87 E-value=9e-07 Score=94.44 Aligned_cols=352 Identities=13% Similarity=0.172 Sum_probs=194.5
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeC-CcchhHHHHHHHHHhc----CCc-EEEEEeccC-hhHHHHHhhhccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIG-GCYRLIDVPMSNCINS----GIK-KIYILTQFN-SQSLNRHISRTYN 162 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~-g~~pLI~~~l~~l~~~----gi~-~I~Iv~~~~-~~~l~~~l~~~~~ 162 (526)
..++.+|.||||.||||+ ...||.++|+. |+ +++|..++++... |.. ..+|.+.++ .+...++|.+ |+
T Consensus 77 L~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~-sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k-~~ 151 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEK-YT 151 (469)
T ss_pred HhcEEEEEecCCcccccC---CCCCceeEEcCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHH-cC
Confidence 356889999999999999 67899999995 55 8999998888653 432 457777754 4467788874 43
Q ss_pred C-CCCcc-cCCCeEEEEec-ccc----cC-cCCCcc-ccChHHHHHHHH--HHhhhhccCCCCeEEEEcCCeecccCHHH
Q 043870 163 L-GDGMN-FGDGFVEVLAA-TQR----QG-ESGKKW-FQGTADAVRQFI--WMFEDAKHRNIENILILSGDHLYRMDYMD 231 (526)
Q Consensus 163 ~-~~~~~-~~~~~v~vl~~-~~~----~~-~~~~~~-~~Gt~~al~~~~--~~i~~~~~~~~e~~lil~gD~l~~~dl~~ 231 (526)
+ ...+. |....+.-+.. ... .+ .....| |.|.++-..... -.+++...+..+.+++.+.|.+...-=..
T Consensus 152 ~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~ 231 (469)
T PLN02474 152 NSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLK 231 (469)
T ss_pred CCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHH
Confidence 2 11111 11111111111 000 00 011224 356655444332 22444444678999999999975443345
Q ss_pred HHHHHHHcCCcEEEEEEEccCCcCCCceEEE-EcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEE
Q 043870 232 FVQHHINSGGDISVCCLPVDESRASDFGLMK-IDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIY 310 (526)
Q Consensus 232 ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~-~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giy 310 (526)
++..|..+++++++=+.+...... +=|.+. .|..=+|.++.+-|...... .+ + ...-.+.+++.+
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d~-kgG~l~~~dgk~~lvEysqvp~e~~~~-f~---~---------~~kf~~fNtnn~ 297 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLADV-KGGTLISYEGKVQLLEIAQVPDEHVNE-FK---S---------IEKFKIFNTNNL 297 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCCC-CccEEEEECCEEEEEEEecCCHHHHHh-hc---c---------cccceeeeeeeE
Confidence 777788889998887665443222 235444 23333578888877643110 00 0 013457899999
Q ss_pred EEcHHHHHHHHHhhCC--------CC-CC--hh--hchHhhhhcC-CcEEEEEe-cceeeecCChhhHHHhchhhcCCCC
Q 043870 311 LFKTEVLLKVLRWHYP--------EA-ND--FG--SEVIPMATKD-FNVQAYLF-NDYWEDIGTIKSFFDANLSLTDKPP 375 (526)
Q Consensus 311 if~~~~l~~ll~~~~~--------~~-~d--~~--~dil~~li~~-~~V~~~~~-~~~w~dIgt~~d~~~An~~ll~~~~ 375 (526)
+|+-+.+.++++.... .. +. +. +.++-++++- .+..++.. ...+..+.+..|+.-+...+.....
T Consensus 298 w~~L~~l~~~~~~~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~ 377 (469)
T PLN02474 298 WVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVD 377 (469)
T ss_pred EEEHHHHHHHhhcCCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhcc
Confidence 9999999877653110 00 00 00 0111122221 12222222 2347788888888877766544332
Q ss_pred CcccCCCCCcccCCC--CCCCCee-ec--CeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchh
Q 043870 376 KFHFYDPQKPIFTSP--RFLPPSK-IE--KCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTE 450 (526)
Q Consensus 376 ~~~~~~~~~~i~~~~--~~~~~~~-i~--~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~ 450 (526)
......+.....+.+ .++|..+ +. ..++. +--+.++ ..+-.|-..+..|.++++++.|++-+.
T Consensus 378 ~~l~~~~~~~~~~~p~IeL~~~f~~v~~f~~rf~----~iPsl~~---~d~LtV~Gdv~fG~~v~l~G~v~i~~~----- 445 (469)
T PLN02474 378 GFVIRNKARTNPSNPSIELGPEFKKVANFLSRFK----SIPSIVE---LDSLKVSGDVWFGSGIVLKGKVTITAK----- 445 (469)
T ss_pred CeEEecCcccCCCCCcEEECcccccHHhHHHhcC----CCCCccc---CCeEEEeeeeEECCCcEEEEEEEEEcC-----
Confidence 221111111111111 2222211 10 01111 0111111 246677778899999999999998873
Q ss_pred HHHHHHhhCCCcceEECCCCEEeceEECCCC
Q 043870 451 AEIAALLAEGKVPVGIGRDTKIKNCIIDKNA 481 (526)
Q Consensus 451 ~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~ 481 (526)
+..|..|-+|+.+.|++|..+.
T Consensus 446 ---------~~~~~~ip~g~~l~~~~~~~~~ 467 (469)
T PLN02474 446 ---------SGVKLEIPDGAVLENKDINGPE 467 (469)
T ss_pred ---------CCCeeecCCCcEecceeecccC
Confidence 4466889999999998887664
No 157
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.87 E-value=7e-09 Score=112.01 Aligned_cols=105 Identities=16% Similarity=0.298 Sum_probs=63.9
Q ss_pred CeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceE
Q 043870 400 KCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCI 476 (526)
Q Consensus 400 ~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~i 476 (526)
++.|. ++.||++|.|++ +.|.+++||++|+|+ ++.+.++++..+ +.||+++.|. +++
T Consensus 277 ~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~-------------------~~Ig~~~~i~~~~~ 336 (458)
T PRK14354 277 GVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDN-------------------VTVGPFAHLRPGSV 336 (458)
T ss_pred CeEEecceEECCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCC-------------------cEECCceEecCCCE
Confidence 34443 377788888864 667778888888877 355655555444 6777777776 577
Q ss_pred ECCCCEECCCcEEccCCCcC-----------CccccCCCeEEccCc------------EEECCCCEECCCcc
Q 043870 477 IDKNAKIGKNVIIANKDGVE-----------EAERPSDGFYIRSGI------------TVVLKNTTIKDGTI 525 (526)
Q Consensus 477 I~~~~~Ig~~~~i~~~~~v~-----------~~~~~~~~~~I~~g~------------~~i~~~~~i~~gt~ 525 (526)
||.+|+||.++.|.++ .+. +..++++++.|+.++ ++|++++.||.+++
T Consensus 337 Ig~~~~i~~~~~i~~~-~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~ 407 (458)
T PRK14354 337 IGEEVKIGNFVEIKKS-TIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSN 407 (458)
T ss_pred EeCCcEECCceEEeee-EECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCE
Confidence 7777777766665432 121 233455555555442 34566666666654
No 158
>PLN02472 uncharacterized protein
Probab=98.87 E-value=1.8e-08 Score=99.46 Aligned_cols=97 Identities=13% Similarity=0.218 Sum_probs=70.4
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEece---EEECCcccchhHHHHHHhhCCCcceEECCCCEEe---------
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDT---MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK--------- 473 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~--------- 473 (526)
+.|.+++.|.+ ++.||+++.|.++++|.+. +.+|.+ +.||+||.|.
T Consensus 66 ~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~------------------t~Ig~~~vI~~~~~~~~~i 123 (246)
T PLN02472 66 AYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFC------------------SNVQERCVLHAAWNSPTGL 123 (246)
T ss_pred CEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCC------------------CEECCCCEEeecCccccCC
Confidence 55566666654 6888888888888888764 777775 7888888884
Q ss_pred --ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 474 --NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 474 --~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
+++|+++|.||.+++|.++ .+....++|.++.|..|+ +|+++++|++|++|
T Consensus 124 ~~~tvIG~~v~IG~~s~L~~~-~Igd~v~IG~~svI~~ga-vIg~~~~Ig~gsvV 176 (246)
T PLN02472 124 PAETLIDRYVTIGAYSLLRSC-TIEPECIIGQHSILMEGS-LVETHSILEAGSVL 176 (246)
T ss_pred CCCcEECCCCEECCCcEECCe-EEcCCCEECCCCEECCCC-EECCCCEECCCCEE
Confidence 5888888888888888654 566666666666666653 45777777777653
No 159
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.85 E-value=3e-08 Score=91.97 Aligned_cols=93 Identities=25% Similarity=0.324 Sum_probs=58.5
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceE------------EECCcccchhHHHHHHhhCCCcceEECCCCEEe
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTM------------MMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK 473 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v------------~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 473 (526)
+.|+++|+|.. .+..+.||++|.|+++|.|..+. ++|++ +.||+++.+.
T Consensus 28 ~~I~~~~~I~g-~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~------------------~~Ig~~~~i~ 88 (161)
T cd03359 28 TIIQSDVIIRG-DLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDY------------------VFIGENCVVN 88 (161)
T ss_pred eEEcCCCEEeC-CCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCc------------------cEECCCCEEE
Confidence 55555555532 12246888888888888888653 44443 6677777777
Q ss_pred ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCc
Q 043870 474 NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGT 524 (526)
Q Consensus 474 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt 524 (526)
+++|++++.||++++|+... ++++++.|++|+ +|.+++.|++.+
T Consensus 89 ~~~Ig~~v~Ig~~~~Ig~~~------~I~~~~~i~~g~-~V~~~~~i~~~~ 132 (161)
T cd03359 89 AAQIGSYVHIGKNCVIGRRC------IIKDCVKILDGT-VVPPDTVIPPYS 132 (161)
T ss_pred eeEEcCCcEECCCCEEcCCC------EECCCcEECCCC-EECCCCEeCCCC
Confidence 88888888888888887654 444445555443 224444444444
No 160
>PLN02296 carbonate dehydratase
Probab=98.85 E-value=1.4e-08 Score=101.59 Aligned_cols=86 Identities=24% Similarity=0.404 Sum_probs=52.7
Q ss_pred ceEECCCcEECCCCEEece---EEECCcccchhHHHHHHhhCCCcceEECCCCEEe-----------ceEECCCCEECCC
Q 043870 421 HSIVGIRSRLEYGVELKDT---MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-----------NCIIDKNAKIGKN 486 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-----------~~iI~~~~~Ig~~ 486 (526)
++.||.+|.|.++|.|... +.+|++ +.|++||.|. +|+||++|.||.+
T Consensus 70 ~V~IG~~~~I~~gavI~g~~~~I~IG~~------------------~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~ 131 (269)
T PLN02296 70 DVQVGRGSSIWYGCVLRGDVNSISVGSG------------------TNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHS 131 (269)
T ss_pred ceEECCCCEECCCCEEEcCCCceEECCC------------------CEECCCCEEEeCCCcccCCCCCcEeCCCCEECCC
Confidence 5667777777777776644 366665 6677777663 4677777777777
Q ss_pred cEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCccC
Q 043870 487 VIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTII 526 (526)
Q Consensus 487 ~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~i 526 (526)
++|.++ .+.+++.++.++.|..| ++|+++++|++|++|
T Consensus 132 avI~g~-~Igd~v~IG~ga~I~~g-v~Ig~~a~IgagSvV 169 (269)
T PLN02296 132 AVLHGC-TVEDEAFVGMGATLLDG-VVVEKHAMVAAGALV 169 (269)
T ss_pred ceecCC-EECCCcEECCCcEECCC-eEECCCCEECCCCEE
Confidence 766443 34445555555555444 244666777666653
No 161
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=98.84 E-value=1.8e-08 Score=96.15 Aligned_cols=97 Identities=9% Similarity=0.246 Sum_probs=66.6
Q ss_pred cccCCCCCcccCCCCCCCCeee-cCeeEee----eEECCCCEEcc-eee-----eceEECCCcEECCCCEEeceEEECCc
Q 043870 377 FHFYDPQKPIFTSPRFLPPSKI-EKCRVQD----SIISHGCFLRE-CSV-----EHSIVGIRSRLEYGVELKDTMMMGAD 445 (526)
Q Consensus 377 ~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~----s~Ig~~~~i~~-~~v-----~~s~ig~~~~I~~~~~i~~~v~~~~~ 445 (526)
..++++.+.+...+.+++.+.| .++.|.. ..||++|.|++ |.| .+|+||+++.|+++|.|.++++..+
T Consensus 14 ~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~- 92 (192)
T TIGR02287 14 EAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN- 92 (192)
T ss_pred CcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC-
Confidence 3466666666666667777777 4666642 46667777763 444 5688899999998888887665444
Q ss_pred ccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEECCCcEEccC
Q 043870 446 YYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~ 492 (526)
+.||.++.|.+ ++|+++|.|++++.+...
T Consensus 93 ------------------~~IG~ga~I~~g~~IG~~s~Vgags~V~~~ 122 (192)
T TIGR02287 93 ------------------ALVGMNAVVMDGAVIGENSIVAASAFVKAG 122 (192)
T ss_pred ------------------CEECCCcccCCCeEECCCCEEcCCCEECCC
Confidence 67777777754 777777777777766543
No 162
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.84 E-value=1.6e-08 Score=86.80 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=58.3
Q ss_pred EECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCC
Q 043870 407 IISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKN 486 (526)
Q Consensus 407 ~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~ 486 (526)
.|+++|.| ++++||.+|+|+ ++.|.+++++.+ +.||+++.|.+|+|+++++||++
T Consensus 3 ~i~~~~~i-----~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~~ 57 (104)
T cd04651 3 YIGRRGEV-----KNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGRN 57 (104)
T ss_pred eecCCCEE-----EeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECCC
Confidence 45555555 589999999999 999999998887 89999999999999999999999
Q ss_pred cEEccCCCcCCccccCCCeEE
Q 043870 487 VIIANKDGVEEAERPSDGFYI 507 (526)
Q Consensus 487 ~~i~~~~~v~~~~~~~~~~~I 507 (526)
+.+.++ .+.+..++++++.|
T Consensus 58 ~~i~~s-iig~~~~Ig~~~~v 77 (104)
T cd04651 58 AVIRRA-IIDKNVVIPDGVVI 77 (104)
T ss_pred CEEEeE-EECCCCEECCCCEE
Confidence 999753 23333333333333
No 163
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.84 E-value=2.4e-08 Score=99.56 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=54.0
Q ss_pred ccCCCCCCCCeeecCeeEeeeEECCCCEEcceee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcce
Q 043870 386 IFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPV 464 (526)
Q Consensus 386 i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 464 (526)
....+++.|++++.. ++.|++|++|.++.+ .++.||++++|+.++.|++++.+|.+ +
T Consensus 100 ~~~~~rI~p~a~V~~----ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~n------------------v 157 (272)
T PRK11830 100 KEAGVRVVPGAVVRR----GAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------V 157 (272)
T ss_pred ccCCcEEcCCeEECC----CCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCC------------------c
Confidence 344555555555533 455666666654333 34556666666666666655555554 5
Q ss_pred EECCCCEEe---------ceEECCCCEECCCcEEccCCCcCCccccCCCeEEc
Q 043870 465 GIGRDTKIK---------NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIR 508 (526)
Q Consensus 465 ~Ig~~~~i~---------~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~ 508 (526)
.|+.++.|. +++|++||.||.+++|.....+.+...++.+++|.
T Consensus 158 ~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~ 210 (272)
T PRK11830 158 HLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLG 210 (272)
T ss_pred EECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEc
Confidence 555555554 25666666666666665444344443333333333
No 164
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.84 E-value=2.3e-08 Score=96.38 Aligned_cols=59 Identities=12% Similarity=0.275 Sum_probs=40.5
Q ss_pred cCCCCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEec
Q 043870 379 FYDPQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKD 438 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~ 438 (526)
.+++++.+.. +.+++++.| .+|.+.++.||++|.|+. |.+.+++||.+|.|++++.|..
T Consensus 10 ~I~~~a~i~~-~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 10 TLHPTAELTE-SKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred eECCCcEEec-cEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 5566666643 567777777 457777777777777763 6667777777777777777754
No 165
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.83 E-value=5.2e-08 Score=92.70 Aligned_cols=19 Identities=21% Similarity=-0.094 Sum_probs=9.8
Q ss_pred eeeecCChhhHHHhchhhc
Q 043870 353 YWEDIGTIKSFFDANLSLT 371 (526)
Q Consensus 353 ~w~dIgt~~d~~~An~~ll 371 (526)
++..++.++...+....+.
T Consensus 62 ~iiai~~~~~~~~i~~~l~ 80 (201)
T TIGR03570 62 LVVAIGDNKLRRRLFEKLK 80 (201)
T ss_pred EEEEcCCHHHHHHHHHHHH
Confidence 4555665555555544443
No 166
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.83 E-value=2.2e-08 Score=95.30 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=5.8
Q ss_pred eEECCCCEECCCcEE
Q 043870 475 CIIDKNAKIGKNVII 489 (526)
Q Consensus 475 ~iI~~~~~Ig~~~~i 489 (526)
|.|+++|+||.++++
T Consensus 154 ~~ig~~~~ig~~~~v 168 (201)
T TIGR03570 154 VVIGEGVFIGAGATI 168 (201)
T ss_pred cEECCCCEECCCCEE
Confidence 333333333333333
No 167
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.81 E-value=1.3e-07 Score=89.41 Aligned_cols=219 Identities=20% Similarity=0.203 Sum_probs=138.3
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCccc
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~ 169 (526)
++..|||+|-|.+.|.. .|-+.+++|+ |||.|+|+++.+++ |++|+|-+. ++.+.+.- ..|
T Consensus 2 ~~~iAiIpAR~gSKgI~------~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSsD--s~~Il~~A-~~y-------- 63 (228)
T COG1083 2 MKNIAIIPARGGSKGIK------NKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISSD--SEEILEEA-KKY-------- 63 (228)
T ss_pred cceEEEEeccCCCCcCC------ccchHHhCCc-chHHHHHHHHhcCCccceEEEcCC--cHHHHHHH-HHh--------
Confidence 45689999999999998 7999999999 99999999999998 577776654 33333332 233
Q ss_pred CCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHHHHcCCcEEEEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h~~~~ad~ti~~ 247 (526)
|.. +.++...... ++ ...|.+++.++...+. ...+.++++.+-. +...++.+.++.+.+.+.+-.+.+
T Consensus 64 gak-~~~~Rp~~LA----~D-~ast~~~~lh~le~~~----~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa 133 (228)
T COG1083 64 GAK-VFLKRPKELA----SD-RASTIDAALHALESFN----IDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSA 133 (228)
T ss_pred Ccc-ccccCChhhc----cC-chhHHHHHHHHHHHhc----cccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEE
Confidence 111 2122221111 00 0123345555555543 3445578888777 455579999999999888888888
Q ss_pred EEccCCcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC
Q 043870 248 LPVDESRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE 327 (526)
Q Consensus 248 ~~~~~~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~ 327 (526)
.+.+... |.... +.+|.+..+.+.|..... .+. ....|..+..+|+++++.|.+ .
T Consensus 134 ~e~e~~p---~k~f~-~~~~~~~~~~~~~~~~~r-------------rQ~-Lpk~Y~~NgaiYi~~~~~l~e---~---- 188 (228)
T COG1083 134 VECEHHP---YKAFS-LNNGEVKPVNEDPDFETR-------------RQD-LPKAYRENGAIYINKKDALLE---N---- 188 (228)
T ss_pred eecccch---HHHHH-hcCCceeecccCCccccc-------------ccc-chhhhhhcCcEEEehHHHHhh---c----
Confidence 8776422 21111 234778877776642210 000 014577889999999998852 1
Q ss_pred CCChhhchHhhhhcCCcEEEEEec-ceeeecCChhhHHHhchhhcC
Q 043870 328 ANDFGSEVIPMATKDFNVQAYLFN-DYWEDIGTIKSFFDANLSLTD 372 (526)
Q Consensus 328 ~~d~~~dil~~li~~~~V~~~~~~-~~w~dIgt~~d~~~An~~ll~ 372 (526)
...|+ .+...|..+ ....||++..||..|+..+..
T Consensus 189 ~~~f~----------~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 189 DCFFI----------PNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred Cceec----------CCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 12221 223334443 457799999999999987643
No 168
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=98.81 E-value=2.7e-08 Score=91.87 Aligned_cols=97 Identities=14% Similarity=0.233 Sum_probs=68.1
Q ss_pred cccCCCCCcccCCCCCCCCeee-cCeeEee----eEECCCCEEcceeee------ceEECCCcEECCCCEEeceEEECCc
Q 043870 377 FHFYDPQKPIFTSPRFLPPSKI-EKCRVQD----SIISHGCFLRECSVE------HSIVGIRSRLEYGVELKDTMMMGAD 445 (526)
Q Consensus 377 ~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~----s~Ig~~~~i~~~~v~------~s~ig~~~~I~~~~~i~~~v~~~~~ 445 (526)
..|++|++.+...+++++.+.| .++.+.. -.||++|.|.+.+|- .+.||+++.||.+|.|+.|. +|++
T Consensus 17 ~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~-Ig~~ 95 (176)
T COG0663 17 TAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCT-IGDN 95 (176)
T ss_pred ceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeE-ECCC
Confidence 4588888888888888888888 5666543 678999999865542 36778888888888777733 3333
Q ss_pred ccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEECCCcEEccC
Q 043870 446 YYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~~ 492 (526)
+.||-|+.|-| |.||++|.||+++.+...
T Consensus 96 ------------------~lIGmgA~vldga~IG~~~iVgAgalV~~~ 125 (176)
T COG0663 96 ------------------VLIGMGATVLDGAVIGDGSIVGAGALVTPG 125 (176)
T ss_pred ------------------cEEecCceEeCCcEECCCcEEccCCcccCC
Confidence 66666666665 666666666666666554
No 169
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.79 E-value=1.8e-08 Score=96.52 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=79.2
Q ss_pred CCCCCcccCCCCCCCCeeec-CeeEe-eeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHh
Q 043870 380 YDPQKPIFTSPRFLPPSKIE-KCRVQ-DSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALL 457 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i~-~~~i~-~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~ 457 (526)
++|.+-+.+.+.++++++|. -|.|. ++.|++|+.|+. |++|-..+.||.+++|-...++|.. +..-..
T Consensus 6 IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~s----hvvv~G~T~IG~~n~I~~~A~iG~~------pQdlKy 75 (260)
T COG1043 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKS----HVVVEGHTTIGRNNRIFPFASIGED------PQDLKY 75 (260)
T ss_pred cCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcc----cEEEeCCeEECCCCEEecccccCCC------Cccccc
Confidence 44444444444444444442 11111 355555555554 5555555566666666555555542 112223
Q ss_pred hCCCcceEECCCCEEec-eEECC-------CCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCc
Q 043870 458 AEGKVPVGIGRDTKIKN-CIIDK-------NAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGT 524 (526)
Q Consensus 458 ~~~~~~~~Ig~~~~i~~-~iI~~-------~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt 524 (526)
+.+..-+.||+|+.|+. +.|-. -++||++.-+.....+.-.+++|++|.+..+++ .|++.+.||..|
T Consensus 76 kge~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~s 155 (260)
T COG1043 76 KGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLS 155 (260)
T ss_pred CCCceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcc
Confidence 33344488999999984 55522 346777777777777777888888888875544 677777777765
Q ss_pred c
Q 043870 525 I 525 (526)
Q Consensus 525 ~ 525 (526)
-
T Consensus 156 a 156 (260)
T COG1043 156 A 156 (260)
T ss_pred e
Confidence 3
No 170
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.5e-08 Score=102.93 Aligned_cols=90 Identities=21% Similarity=0.304 Sum_probs=79.0
Q ss_pred CcccCCCCCCCCeee-cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCC
Q 043870 384 KPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGK 461 (526)
Q Consensus 384 ~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~ 461 (526)
+-...++.+++.+.| ++..|+.|+||.+|.|++ +.|.+|+|-+++.||+||.|.+|++...
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g----------------- 391 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMG----------------- 391 (433)
T ss_pred eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceeccc-----------------
Confidence 345667788999999 588899999999999995 8899999999999999999999988776
Q ss_pred cceEECCCCEEeceEECCCCEECCCcEEccC
Q 043870 462 VPVGIGRDTKIKNCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 462 ~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~ 492 (526)
+.||++++++||+||.+-++.+..+..+.
T Consensus 392 --A~Ig~gs~L~nC~Ig~~yvVeak~~~~~e 420 (433)
T KOG1462|consen 392 --AQIGSGSKLKNCIIGPGYVVEAKGKHGGE 420 (433)
T ss_pred --ceecCCCeeeeeEecCCcEEccccccccc
Confidence 89999999999999999999976655543
No 171
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=98.78 E-value=2.7e-08 Score=97.62 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=12.7
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 492 (526)
+.||++|.|. +|+|.++++||++++|+..
T Consensus 161 v~IGd~v~IG~gsvI~~g~~Ig~~~~Igag 190 (231)
T TIGR03532 161 VVIEDNVLIGANAVILEGVRVGKGAVVAAG 190 (231)
T ss_pred eEECCCcEECCCCEEcCCCEECCCCEECCC
Confidence 4444444444 2444444444444444433
No 172
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=98.78 E-value=9e-08 Score=88.16 Aligned_cols=97 Identities=11% Similarity=0.154 Sum_probs=71.3
Q ss_pred CcccCCCCCcccCCCCCCCCeee-cCeeEee----eEECCCCEEcc-eeeec-----eEECCCcEECCCCEEeceEEECC
Q 043870 376 KFHFYDPQKPIFTSPRFLPPSKI-EKCRVQD----SIISHGCFLRE-CSVEH-----SIVGIRSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 376 ~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~----s~Ig~~~~i~~-~~v~~-----s~ig~~~~I~~~~~i~~~v~~~~ 444 (526)
+..++++.+.+.+.+.+++.+.| +++.|.. ..||++|.|++ |.|.+ ++||+++.|+.++.+.++ ++|+
T Consensus 5 ~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~-~Ig~ 83 (154)
T cd04650 5 PKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGA-KVGN 83 (154)
T ss_pred CCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECc-EECC
Confidence 44577788888777888888888 5777765 48999999975 56643 789999999999998765 4554
Q ss_pred cccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEcc
Q 043870 445 DYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 491 (526)
+ +.||.++.+. +++|++++.|+.++.+..
T Consensus 84 ~------------------~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~ 113 (154)
T cd04650 84 Y------------------VIVGMGAILLNGAKIGDHVIIGAGAVVTP 113 (154)
T ss_pred C------------------CEEcCCCEEeCCCEECCCCEECCCCEECC
Confidence 4 6777777775 467777777776666654
No 173
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.77 E-value=4.4e-07 Score=97.53 Aligned_cols=216 Identities=17% Similarity=0.180 Sum_probs=127.2
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeC---CcchhHHHHHHHHHhc--------------CCcEEEEEeccChhHH
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIG---GCYRLIDVPMSNCINS--------------GIKKIYILTQFNSQSL 153 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~---g~~pLI~~~l~~l~~~--------------gi~~I~Iv~~~~~~~l 153 (526)
.++.+||||||.||||+ ...||+|+||+ |+ ||++++++++... .+.-+++...+..+.+
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 45899999999999997 67899999994 88 9999999999874 2444444455888888
Q ss_pred HHHhhhcccCCCC---cc-cCCCeEEEEecc-c----ccCcCCCccccChHHHHHHHHH--HhhhhccCCCCeEEEEcCC
Q 043870 154 NRHISRTYNLGDG---MN-FGDGFVEVLAAT-Q----RQGESGKKWFQGTADAVRQFIW--MFEDAKHRNIENILILSGD 222 (526)
Q Consensus 154 ~~~l~~~~~~~~~---~~-~~~~~v~vl~~~-~----~~~~~~~~~~~Gt~~al~~~~~--~i~~~~~~~~e~~lil~gD 222 (526)
.+++.+...|+-. +. |..+.+..+... . .+...-...|.|+++-...... .+++...+..+.+.+.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 8998754323311 11 111222222110 0 0000001124577655544321 2444445788999999999
Q ss_pred ee-cccCHHHHHHHHHHcCC-cEEEEEEEccCCcCCCceEEEE-cCCCCeeeeeccCCccccccccccccccccchhhhc
Q 043870 223 HL-YRMDYMDFVQHHINSGG-DISVCCLPVDESRASDFGLMKI-DETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEAR 299 (526)
Q Consensus 223 ~l-~~~dl~~ll~~h~~~~a-d~ti~~~~~~~~~~~~~g~v~~-d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~ 299 (526)
.+ ...---.++-.+...++ ++.-.+.+... ...-|++.. |..-.|+.+.|-+...... ..-+++.+
T Consensus 261 N~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~~-~~~~~g~l-------- 329 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILNN-DELLTGEL-------- 329 (482)
T ss_pred cccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhhc-ccccCCee--------
Confidence 96 44444456666677777 65544443332 233466654 3333678888755432110 00001111
Q ss_pred CCCceeeeeEEEEcHHHHHHHHH
Q 043870 300 NFPYIASMGIYLFKTEVLLKVLR 322 (526)
Q Consensus 300 ~~~~l~~~Giyif~~~~l~~ll~ 322 (526)
.-...++..++|+-++|.++++
T Consensus 330 -~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 330 -AFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred -cccccceEEEEEEHHHHHHHhh
Confidence 2356788999999999987654
No 174
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.76 E-value=4e-08 Score=85.87 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=41.6
Q ss_pred eeEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCE
Q 043870 405 DSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAK 482 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~ 482 (526)
++.||++|.|+. +.+ .+++||++|.|++++.+.+....+. .+.+++.+.+++|+++|.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~--------------------~~~~~~~~~~~~Ig~~~~ 75 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS--------------------KIYRKWELKGTTVKRGAS 75 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc--------------------ccccccccCCcEECCCcE
Confidence 466777777764 333 3566666666666666655444332 234456667777777777
Q ss_pred ECCCcEEccC
Q 043870 483 IGKNVIIANK 492 (526)
Q Consensus 483 Ig~~~~i~~~ 492 (526)
||.++++.+.
T Consensus 76 Ig~~~~v~~~ 85 (119)
T cd03358 76 IGANATILPG 85 (119)
T ss_pred ECcCCEEeCC
Confidence 7777777544
No 175
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.76 E-value=2.5e-08 Score=106.82 Aligned_cols=111 Identities=22% Similarity=0.282 Sum_probs=69.2
Q ss_pred CCCCCCCeeecCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEEC
Q 043870 389 SPRFLPPSKIEKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIG 467 (526)
Q Consensus 389 ~~~~~~~~~i~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig 467 (526)
.+.++++|.|+++.+.++.||++|.|+ .+.|++|+||+++.|+.+ .| +.+.+|+..+=.+ +.||
T Consensus 282 ~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~-~~-~~~~i~~~~~i~d-------------~~Ig 346 (430)
T PRK14359 282 NSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNA-KL-NGVKAGHLSYLGD-------------CEID 346 (430)
T ss_pred eeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEEEccc-Ee-ccccccccccccC-------------CEEC
Confidence 345566677766777788999999998 466778888888866643 23 2333333211111 5667
Q ss_pred CCCEEec-eEECC-------CCEECCCcEEccCCCcCCccccCCCeEEccCcEEE
Q 043870 468 RDTKIKN-CIIDK-------NAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVV 514 (526)
Q Consensus 468 ~~~~i~~-~iI~~-------~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i 514 (526)
++|.|.. ++++. .+.||++|.|+....+....+++++++|++|+++.
T Consensus 347 ~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~ 401 (430)
T PRK14359 347 EGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVT 401 (430)
T ss_pred CCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEc
Confidence 7666663 33332 25555555555555555667888889998887763
No 176
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.76 E-value=5.4e-08 Score=91.65 Aligned_cols=6 Identities=33% Similarity=0.313 Sum_probs=2.7
Q ss_pred eecCCh
Q 043870 355 EDIGTI 360 (526)
Q Consensus 355 ~dIgt~ 360 (526)
.-++++
T Consensus 61 iai~~~ 66 (197)
T cd03360 61 VAIGDN 66 (197)
T ss_pred EecCCH
Confidence 344444
No 177
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.75 E-value=3.6e-08 Score=79.64 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=60.1
Q ss_pred EECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCccccC
Q 043870 423 IVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAERPS 502 (526)
Q Consensus 423 ~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~ 502 (526)
+||+++.|+++|.|.++++..+ +.||++++|.+|+|+++++|++++.|.++ .+.+..+++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~-------------------~~ig~~~~i~~s~i~~~~~i~~~~~i~~~-~i~~~~~i~ 60 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRN-------------------CKIGKNVVIDNSYIWDDVTIEDGCTIHHS-IVADGAVIG 60 (79)
T ss_pred CccCCCEECCCCEEeccEECCC-------------------CEECCCCEEeCcEEeCCCEECCCCEEeCc-EEcCCCEEC
Confidence 4789999999999987655444 89999999999999999999999999743 455666666
Q ss_pred CCeEEccCcEEECCCCEECC
Q 043870 503 DGFYIRSGITVVLKNTTIKD 522 (526)
Q Consensus 503 ~~~~I~~g~~~i~~~~~i~~ 522 (526)
.+++|+.+++ |++++.||+
T Consensus 61 ~~~~i~~~~~-v~~~~~ig~ 79 (79)
T cd05787 61 KGCTIPPGSL-ISFGVVIGD 79 (79)
T ss_pred CCCEECCCCE-EeCCcEeCc
Confidence 6666665533 366665553
No 178
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.75 E-value=6.3e-08 Score=88.97 Aligned_cols=15 Identities=7% Similarity=0.129 Sum_probs=7.0
Q ss_pred cEECCCCEEeceEEE
Q 043870 428 SRLEYGVELKDTMMM 442 (526)
Q Consensus 428 ~~I~~~~~i~~~v~~ 442 (526)
+.|+++|.|...+.+
T Consensus 61 ~~Ig~~~~I~~~~~i 75 (153)
T cd04645 61 TIIGDNVTVGHGAVL 75 (153)
T ss_pred eEEcCCcEECCCcEE
Confidence 445555555444443
No 179
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.72 E-value=6.3e-08 Score=82.69 Aligned_cols=66 Identities=12% Similarity=0.231 Sum_probs=48.0
Q ss_pred eEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEE
Q 043870 406 SIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKI 483 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~I 483 (526)
++|+++|.|++ +.| .+++||.+|+|+. +|.++++++. +.|++++.|.+++|+.+++|
T Consensus 30 v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~i 88 (101)
T cd05635 30 VYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCNL 88 (101)
T ss_pred CEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCEE
Confidence 45555555543 333 2577777777763 5777777776 67888888888999999999
Q ss_pred CCCcEEccC
Q 043870 484 GKNVIIANK 492 (526)
Q Consensus 484 g~~~~i~~~ 492 (526)
|+++.+.|-
T Consensus 89 g~~~~~~~~ 97 (101)
T cd05635 89 GAGTNNSDL 97 (101)
T ss_pred CCCceeccc
Confidence 999888764
No 180
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.70 E-value=4.6e-08 Score=97.80 Aligned_cols=6 Identities=33% Similarity=1.044 Sum_probs=3.0
Q ss_pred eeeecC
Q 043870 353 YWEDIG 358 (526)
Q Consensus 353 ~w~dIg 358 (526)
-|..-|
T Consensus 133 aWtn~g 138 (341)
T TIGR03536 133 AWTNQG 138 (341)
T ss_pred eeecCC
Confidence 455544
No 181
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.62 E-value=2.3e-07 Score=75.52 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=52.5
Q ss_pred eeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCE
Q 043870 405 DSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAK 482 (526)
Q Consensus 405 ~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~ 482 (526)
++.|+++|.|+ .+.|.+++|++++.|++++.|.++++..+ +.||+++.+.+ ++|+++++
T Consensus 17 ~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~~~~~~~~ig~~~~ 77 (80)
T cd05824 17 NVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWTRLENVTVLGDDVT 77 (80)
T ss_pred CCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCcEEecCEEECCceE
Confidence 57788888886 47778999999999999999999887776 79999999987 78888877
Q ss_pred ECC
Q 043870 483 IGK 485 (526)
Q Consensus 483 Ig~ 485 (526)
||+
T Consensus 78 i~~ 80 (80)
T cd05824 78 IKD 80 (80)
T ss_pred ECC
Confidence 764
No 182
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.62 E-value=1.8e-07 Score=81.66 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=43.6
Q ss_pred ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEEC----------CCCEECCCcEEc
Q 043870 421 HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIID----------KNAKIGKNVIIA 490 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~----------~~~~Ig~~~~i~ 490 (526)
+++||+++.|+.++.|.+.+.+|.+ +.|++++.+.++.+. .++.||+++.|+
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig 77 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDD------------------VFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIG 77 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCC------------------cEEcCCeEEecCCCCccccccccccCCcEECCCcEEC
Confidence 5677777777777777655555554 566666666543332 345566666666
Q ss_pred cCCCcCCccccCCCeEEccCcE
Q 043870 491 NKDGVEEAERPSDGFYIRSGIT 512 (526)
Q Consensus 491 ~~~~v~~~~~~~~~~~I~~g~~ 512 (526)
+...+.+..++++++.|+++.+
T Consensus 78 ~~~~v~~~~~ig~~~~i~~~~~ 99 (119)
T cd03358 78 ANATILPGVTIGEYALVGAGAV 99 (119)
T ss_pred cCCEEeCCcEECCCCEEccCCE
Confidence 6655555555555555555544
No 183
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.60 E-value=3.8e-07 Score=82.14 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=29.4
Q ss_pred CcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcceee-eceEECCCcEECCCCEEe
Q 043870 384 KPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRECSV-EHSIVGIRSRLEYGVELK 437 (526)
Q Consensus 384 ~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~~~v-~~s~ig~~~~I~~~~~i~ 437 (526)
..+..++.+++++.| .++.+. ++.||++|.|.. .+ .+++||.+|.|+++|.|.
T Consensus 8 ~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~-~ig~~a~Ighd~~IG~~~~I~ 63 (147)
T cd04649 8 DRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG-RISSGVIVGKGSDVGGGASIM 63 (147)
T ss_pred CEECCCCEECCCcEECCCCEEccCCEECCCeEECC-cccCCEEECCCCEECCCCEEE
Confidence 334444555555555 223222 466666666641 22 356777777777777776
No 184
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.58 E-value=2.8e-07 Score=92.02 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=46.2
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEEC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig 484 (526)
+.||+|++|... ...+||.+++||++|.|...+.+|+... ..|.....||+||.|. +|.|..+++||
T Consensus 148 a~IG~g~~I~h~--~givIG~~a~IGdnv~I~~~VtiGg~~~----------~~~~~~p~IGd~V~IGaga~Ilggv~IG 215 (273)
T PRK11132 148 AKIGRGIMLDHA--TGIVIGETAVIENDVSILQSVTLGGTGK----------TSGDRHPKIREGVMIGAGAKILGNIEVG 215 (273)
T ss_pred ceECCCeEEcCC--CCeEECCCCEECCCCEEcCCcEEecCcc----------cCCCcCCEECCCcEEcCCCEEcCCCEEC
Confidence 456666666531 1357777777777777777776664210 1122234666666665 46666666666
Q ss_pred CCcEEccCCCcCC
Q 043870 485 KNVIIANKDGVEE 497 (526)
Q Consensus 485 ~~~~i~~~~~v~~ 497 (526)
++++|+....|..
T Consensus 216 ~~a~IGAgSvV~~ 228 (273)
T PRK11132 216 RGAKIGAGSVVLQ 228 (273)
T ss_pred CCCEECCCCEECc
Confidence 6666666555443
No 185
>PLN02694 serine O-acetyltransferase
Probab=98.55 E-value=2.4e-07 Score=92.70 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=40.0
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEEC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig 484 (526)
+.||+|++|... ..++||++++||++|.|..++++|+.. -..+.+.+.||++|.|. +|.|..|++||
T Consensus 167 A~IG~gv~Idh~--tGVVIGe~a~IGdnv~I~~~VtLGg~g----------~~~~~r~piIGd~V~IGagA~Ilggi~IG 234 (294)
T PLN02694 167 AKIGKGILFDHA--TGVVIGETAVIGNNVSILHHVTLGGTG----------KACGDRHPKIGDGVLIGAGATILGNVKIG 234 (294)
T ss_pred ceecCCEEEeCC--CCeEECCCcEECCCCEEeecceeCCcc----------cccCCCccEECCCeEECCeeEECCCCEEC
Confidence 344444444321 146777777777777777777776520 01122334555555554 34444444444
Q ss_pred CCcEEccCCCcC
Q 043870 485 KNVIIANKDGVE 496 (526)
Q Consensus 485 ~~~~i~~~~~v~ 496 (526)
++++|+....|.
T Consensus 235 d~a~IGAgSVV~ 246 (294)
T PLN02694 235 EGAKIGAGSVVL 246 (294)
T ss_pred CCCEECCCCEEC
Confidence 444444444333
No 186
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.53 E-value=5.9e-07 Score=83.33 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=25.4
Q ss_pred eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcEEECCCCEECCCc
Q 043870 475 CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITVVLKNTTIKDGT 524 (526)
Q Consensus 475 ~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt 524 (526)
++|++++.|++++++.++ .+....++++++.|+.+++ |++++.|++|+
T Consensus 73 v~Ig~~~~Ig~~~~i~~~-~Ig~~v~Ig~~~~Ig~~~~-I~~~~~i~~g~ 120 (161)
T cd03359 73 LHIGDYVFIGENCVVNAA-QIGSYVHIGKNCVIGRRCI-IKDCVKILDGT 120 (161)
T ss_pred eEECCccEECCCCEEEee-EEcCCcEECCCCEEcCCCE-ECCCcEECCCC
Confidence 467777777777776543 3444445555555554432 24444444443
No 187
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.52 E-value=2.7e-07 Score=97.31 Aligned_cols=92 Identities=16% Similarity=0.273 Sum_probs=74.2
Q ss_pred ccCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHH
Q 043870 378 HFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAAL 456 (526)
Q Consensus 378 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~ 456 (526)
.++.+.+.+ ..+.++++|.|.+ .+.+|+||++|.|+. |.|++|+|+++|+|+++|.|.++++..+
T Consensus 283 ~~i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~------------ 348 (380)
T PRK05293 283 QYIAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN------------ 348 (380)
T ss_pred CEECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC------------
Confidence 345566655 3445777777743 466799999999984 7889999999999999999999777665
Q ss_pred hhCCCcceEECCCCEEec-----eEECCCCEECCCcEEc
Q 043870 457 LAEGKVPVGIGRDTKIKN-----CIIDKNAKIGKNVIIA 490 (526)
Q Consensus 457 ~~~~~~~~~Ig~~~~i~~-----~iI~~~~~Ig~~~~i~ 490 (526)
+.||+++.|.+ .+||++++|+++++|+
T Consensus 349 -------~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 349 -------AVIGDGVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred -------CEECCCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 89999999987 8889999998888774
No 188
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.51 E-value=5.7e-07 Score=89.68 Aligned_cols=26 Identities=4% Similarity=0.081 Sum_probs=11.4
Q ss_pred ccCCCeEEccCcE---EECCCCEECCCcc
Q 043870 500 RPSDGFYIRSGIT---VVLKNTTIKDGTI 525 (526)
Q Consensus 500 ~~~~~~~I~~g~~---~i~~~~~i~~gt~ 525 (526)
.+|++++||.|+. .||++|+||+|++
T Consensus 227 ~IGe~~~IGagA~IGI~IGd~~VVGAGaV 255 (319)
T TIGR03535 227 SIGERCLLGANSGLGISLGDDCVVEAGLY 255 (319)
T ss_pred EECCCcEECCCCEECeEECCCCEECCCCE
Confidence 3344444443333 3455555555543
No 189
>PRK10502 putative acyl transferase; Provisional
Probab=98.46 E-value=7.9e-07 Score=84.19 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=23.9
Q ss_pred eEECCCCEEcc-eee---eceEECCCcEECCCCEEec--eEEECCc
Q 043870 406 SIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKD--TMMMGAD 445 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~--~v~~~~~ 445 (526)
+.||++|.|.+ +.+ .+..||+++.|+++|.|.+ .+.+|++
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~ 97 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAH 97 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCC
Confidence 44555555543 233 2477888888888888763 3445543
No 190
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.46 E-value=1.2e-06 Score=83.58 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=52.3
Q ss_pred eEECCCCEEcc-eee---eceEECCCcEECCCCEEeceEE----ECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceE
Q 043870 406 SIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDTMM----MGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCI 476 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~v~----~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~i 476 (526)
..||++|.|++ +.+ ..++||++|.|++++.|.+... -..+|-..+...... ..-..|+.||+++.|. +++
T Consensus 66 i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~-~~~~~~v~Ig~~~~ig~~~~ 144 (192)
T PRK09677 66 LFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMR-TLESSAVVIGQRVWIGENVT 144 (192)
T ss_pred EEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhc-ccccCCeEEcCCcEECCCCE
Confidence 66788888864 444 3578888888888888865321 000000000000000 0012357888888885 577
Q ss_pred ECCCCEECCCcEEccCCCcCC
Q 043870 477 IDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 477 I~~~~~Ig~~~~i~~~~~v~~ 497 (526)
|..+++||++|+|+..+.+..
T Consensus 145 i~~g~~Ig~~~~Iga~s~v~~ 165 (192)
T PRK09677 145 ILPGVSIGNGCIVGANSVVTK 165 (192)
T ss_pred EcCCCEECCCCEECCCCEECc
Confidence 777777777777777665554
No 191
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.45 E-value=1.6e-06 Score=74.04 Aligned_cols=50 Identities=18% Similarity=0.379 Sum_probs=26.0
Q ss_pred ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEc
Q 043870 421 HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIA 490 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~ 490 (526)
.+.||+++.|+++|.|.+.+.+|++ +.||. .|.+|+|..++.|+.++.|.
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~------------------~~Ig~--~i~~svi~~~~~i~~~~~lg 78 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPT------------------CKIGG--EVEDSIIEGYSNKQHDGFLG 78 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCC------------------CEECC--EECccEEcCCCEecCcCEEe
Confidence 4556666666666655554444443 44442 34455555555555555543
No 192
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.41 E-value=1.5e-06 Score=83.57 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=64.1
Q ss_pred ccCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCC
Q 043870 386 IFTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGK 461 (526)
Q Consensus 386 i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~ 461 (526)
+..++.+.||+.+... .+..||++|+|+. |.+ .++.||++|.|+++|.|... +.... ......-..-.
T Consensus 58 ig~~~~I~~~~~~~~g--~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~---~h~~~---~~~r~~g~~~~ 129 (203)
T PRK09527 58 VGENAWVEPPVYFSYG--SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT---GHPVH---HELRKNGEMYS 129 (203)
T ss_pred cCCCcEEcCCEEEeeC--CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeC---CCCCC---hhhcccccccc
Confidence 3445566777766310 2466777777763 444 34788888888888888632 11100 00000000012
Q ss_pred cceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCC
Q 043870 462 VPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 462 ~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~ 497 (526)
.|+.||++|.|. +|+|..+++||++++|+..+.+..
T Consensus 130 ~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~k 166 (203)
T PRK09527 130 FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTK 166 (203)
T ss_pred CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 468999999997 588888888888888888776655
No 193
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.41 E-value=1.4e-06 Score=69.51 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=39.2
Q ss_pred EECCCCEEcc-eeee-ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEE
Q 043870 407 IISHGCFLRE-CSVE-HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKI 483 (526)
Q Consensus 407 ~Ig~~~~i~~-~~v~-~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~I 483 (526)
.|+++|.|++ +.|. +++||+++.|+++|.|.++.... ...|+.||+++.|.. |+|..+++|
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~----------------~~~~~~ig~~~~v~~~~~i~~~~~i 65 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN----------------EKNPTIIGDNVEIGANAVIHGGVKI 65 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC----------------ccCCcEECCCcEECCCCEEeCCCEE
Confidence 3555555553 3332 47777777777777776653221 112356666666653 666666666
Q ss_pred CCCcEEccC
Q 043870 484 GKNVIIANK 492 (526)
Q Consensus 484 g~~~~i~~~ 492 (526)
|++++|+..
T Consensus 66 g~~~~i~~~ 74 (78)
T cd00208 66 GDNAVIGAG 74 (78)
T ss_pred CCCCEECcC
Confidence 666666543
No 194
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.41 E-value=9.4e-07 Score=82.10 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=11.3
Q ss_pred eEECCCcEECCCCEEeceEEECC
Q 043870 422 SIVGIRSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 422 s~ig~~~~I~~~~~i~~~v~~~~ 444 (526)
++||+++.||++|.|..++.++.
T Consensus 82 ~~Ig~~~~IG~~~~I~~~v~ig~ 104 (162)
T TIGR01172 82 VVIGETAVIGDDVTIYHGVTLGG 104 (162)
T ss_pred EEECCCCEECCCCEEcCCCEECC
Confidence 44445555555555544444443
No 195
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.40 E-value=2e-06 Score=86.20 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=8.1
Q ss_pred ceEECCCcEECCCCEE
Q 043870 421 HSIVGIRSRLEYGVEL 436 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i 436 (526)
.++||.+|.||.+|.|
T Consensus 224 GavIGhds~IG~gasI 239 (341)
T TIGR03536 224 GVMVGKGSDLGGGCST 239 (341)
T ss_pred CCEECCCCEECCCCEE
Confidence 3445555555555555
No 196
>PLN02694 serine O-acetyltransferase
Probab=98.39 E-value=1.1e-06 Score=87.88 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=49.6
Q ss_pred ccCCCCCCCCeeecCeeEeeeEECCCCEEcceeeeceEECCCcEEC---CCCEEeceEEECCcccchhHHHHHHhhCCCc
Q 043870 386 IFTSPRFLPPSKIEKCRVQDSIISHGCFLRECSVEHSIVGIRSRLE---YGVELKDTMMMGADYYQTEAEIAALLAEGKV 462 (526)
Q Consensus 386 i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~---~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~ 462 (526)
|.+.++|+++++|+.. .++.||++|.|++ ++.|+.++.+| .++.. ...++|++
T Consensus 163 I~p~A~IG~gv~Idh~--tGVVIGe~a~IGd----nv~I~~~VtLGg~g~~~~~-r~piIGd~----------------- 218 (294)
T PLN02694 163 IHPAAKIGKGILFDHA--TGVVIGETAVIGN----NVSILHHVTLGGTGKACGD-RHPKIGDG----------------- 218 (294)
T ss_pred eCCcceecCCEEEeCC--CCeEECCCcEECC----CCEEeecceeCCcccccCC-CccEECCC-----------------
Confidence 4555556666555331 1355555555554 33333333332 11222 23556665
Q ss_pred ceEECCCCEE-eceEECCCCEECCCcEEccC
Q 043870 463 PVGIGRDTKI-KNCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 463 ~~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~~~ 492 (526)
+.||.|++| .++.||++|+||+++++...
T Consensus 219 -V~IGagA~Ilggi~IGd~a~IGAgSVV~kd 248 (294)
T PLN02694 219 -VLIGAGATILGNVKIGEGAKIGAGSVVLID 248 (294)
T ss_pred -eEECCeeEECCCCEECCCCEECCCCEECCc
Confidence 899999999 57999999999999999864
No 197
>PRK10502 putative acyl transferase; Provisional
Probab=98.37 E-value=2.3e-06 Score=81.09 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=56.8
Q ss_pred cCCCCCCCCeeecCeeEeeeEECCCCEEcc-eee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCc
Q 043870 387 FTSPRFLPPSKIEKCRVQDSIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKV 462 (526)
Q Consensus 387 ~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~ 462 (526)
...+.+.+++.|..- .+..||++|.|++ +.+ ..++||++|.|+.+|.|.... .++.... ...-..
T Consensus 55 G~~~~I~~~a~i~~~--~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~---h~~~~~~------~~~~~~ 123 (182)
T PRK10502 55 GKGVVIRPSVRITYP--WKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGS---HDYSDPH------FDLNTA 123 (182)
T ss_pred CCCcEEcCCEEEecC--CeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCC---CCCcCCC------cccccC
Confidence 334444455444210 1245666666654 223 357788888888777775321 1110000 000124
Q ss_pred ceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCC
Q 043870 463 PVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 463 ~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~ 497 (526)
|+.||++|.|. +|+|..+++||++++|+....+.+
T Consensus 124 ~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~ 159 (182)
T PRK10502 124 PIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFK 159 (182)
T ss_pred CEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEec
Confidence 58889998887 588888888888888876655443
No 198
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=9e-07 Score=87.19 Aligned_cols=61 Identities=23% Similarity=0.388 Sum_probs=49.1
Q ss_pred cCCCCCcccCCCCCCCCeee-------cCeeEeeeEECCCCEEcc-eeeeceEECCCcEECCCCEEece
Q 043870 379 FYDPQKPIFTSPRFLPPSKI-------EKCRVQDSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDT 439 (526)
Q Consensus 379 ~~~~~~~i~~~~~~~~~~~i-------~~~~i~~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~ 439 (526)
+++|++++.+++.++|++.| +++|+.+|+|-++|.|.+ +.|-||+||++|.||.+++++..
T Consensus 290 yIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 290 YIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGI 358 (407)
T ss_pred EEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccc
Confidence 55666666666666666655 478889999999999985 77899999999999999999764
No 199
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.36 E-value=9.7e-07 Score=82.01 Aligned_cols=28 Identities=36% Similarity=0.525 Sum_probs=16.7
Q ss_pred eEECCCCEEec-eEECCCCEECCCcEEcc
Q 043870 464 VGIGRDTKIKN-CIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 464 ~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~~ 491 (526)
+.||.+++|.. ++||++|.||+++++..
T Consensus 120 v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 120 VMIGAGAKVLGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred cEEcCCCEEECCcEECCCCEECCCCEECC
Confidence 55666665543 56666666666666654
No 200
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.36 E-value=1.4e-06 Score=93.62 Aligned_cols=96 Identities=11% Similarity=0.153 Sum_probs=66.6
Q ss_pred CCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECC----------
Q 043870 410 HGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDK---------- 479 (526)
Q Consensus 410 ~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~---------- 479 (526)
+.+.+..+.+++|.||++|.| ++|.|+++++.++ +.||++|.|.+|+|..
T Consensus 297 ~~a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~~~~~ 356 (429)
T PRK02862 297 PPSKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYESSEER 356 (429)
T ss_pred CCccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCccccccccc
Confidence 334444556667888888888 7888888766655 7888888888888854
Q ss_pred ---------CCEECCCcEEccCCCcCCccccCCCeEEccCc-----------EEECCC-CEECCCccC
Q 043870 480 ---------NAKIGKNVIIANKDGVEEAERPSDGFYIRSGI-----------TVVLKN-TTIKDGTII 526 (526)
Q Consensus 480 ---------~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~-----------~~i~~~-~~i~~gt~i 526 (526)
++.||++|+|.++ .+....++++++.|..+. .+|+.+ ++|+.|+++
T Consensus 357 ~~~~~~~~~~~~Ig~~~~i~~~-ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
T PRK02862 357 EELRKEGKPPLGIGEGTTIKRA-IIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVI 423 (429)
T ss_pred ccccccCCcccEECCCCEEEEE-EECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCC
Confidence 6888888888765 466677777777775333 144555 556665543
No 201
>PLN02357 serine acetyltransferase
Probab=98.36 E-value=2.2e-06 Score=88.13 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=13.5
Q ss_pred eEECCCCEE-eceEECCCCEECCCcEEc
Q 043870 464 VGIGRDTKI-KNCIIDKNAKIGKNVIIA 490 (526)
Q Consensus 464 ~~Ig~~~~i-~~~iI~~~~~Ig~~~~i~ 490 (526)
+.||.|++| .++.||++|.||+++++.
T Consensus 285 V~IGagA~IlggV~IGdga~IGAgSVV~ 312 (360)
T PLN02357 285 VLIGAGTCILGNITIGEGAKIGAGSVVL 312 (360)
T ss_pred eEECCceEEECCeEECCCCEECCCCEEC
Confidence 444444444 245555555555555554
No 202
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.35 E-value=2.6e-06 Score=67.97 Aligned_cols=51 Identities=25% Similarity=0.481 Sum_probs=35.7
Q ss_pred eEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec---------eEECCCCEECCCcEEc
Q 043870 422 SIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN---------CIIDKNAKIGKNVIIA 490 (526)
Q Consensus 422 s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~---------~iI~~~~~Ig~~~~i~ 490 (526)
+.||+++.|++++.|.+.+.+|++ +.|++++.|.+ ++|+++|.|+.++++.
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~ 60 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDN------------------VNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCC------------------CEECCCCEEEeccCCCccCCcEECCCcEECCCCEEe
Confidence 467888888888888776777765 77888887775 4556666666555554
No 203
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.35 E-value=1.4e-06 Score=93.80 Aligned_cols=24 Identities=8% Similarity=0.299 Sum_probs=10.5
Q ss_pred CCCCeeecCeeEeeeEECCCCEEc
Q 043870 392 FLPPSKIEKCRVQDSIISHGCFLR 415 (526)
Q Consensus 392 ~~~~~~i~~~~i~~s~Ig~~~~i~ 415 (526)
+.++|.|.++.|.+|+|+++|.|+
T Consensus 318 I~~~~~I~~~~I~~svI~~~~~Ig 341 (436)
T PLN02241 318 ISHGCFLRECKIEHSVVGLRSRIG 341 (436)
T ss_pred EcCCcEEcCeEEEeeEEcCCCEEC
Confidence 444444443444444444444444
No 204
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.34 E-value=2.1e-06 Score=89.73 Aligned_cols=34 Identities=6% Similarity=0.123 Sum_probs=20.0
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~ 444 (526)
+.|+++|.|. +++|+..+.||++|+|+++++.++
T Consensus 255 ~~i~~~~~i~-----~~~i~~~~~Ig~~~~I~~~~i~~~ 288 (353)
T TIGR01208 255 VVVGEGAKIV-----NSVIRGPAVIGEDCIIENSYIGPY 288 (353)
T ss_pred EEECCCCEEe-----CCEEECCcEECCCCEEcCcEECCC
Confidence 5555555552 555656666666666666655544
No 205
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.34 E-value=1.6e-06 Score=81.17 Aligned_cols=52 Identities=19% Similarity=0.371 Sum_probs=29.9
Q ss_pred eEECCCCEECCCcEEccCCCcC--CccccCCCeEEccCcE-----EECCCCEECCCccC
Q 043870 475 CIIDKNAKIGKNVIIANKDGVE--EAERPSDGFYIRSGIT-----VVLKNTTIKDGTII 526 (526)
Q Consensus 475 ~iI~~~~~Ig~~~~i~~~~~v~--~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~i 526 (526)
++||+||.|-.+|+|++...-. .+.+++++++|++|+. .||+|+.||+|+||
T Consensus 94 a~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVV 152 (194)
T COG1045 94 AVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVV 152 (194)
T ss_pred eEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECCCceE
Confidence 3444555555555555443322 3556666677766654 56777777777764
No 206
>PLN02739 serine acetyltransferase
Probab=98.33 E-value=2.6e-06 Score=87.01 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=15.8
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCCCc
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGV 495 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v 495 (526)
+.||+||.|. ++.|..+++||++++|+....|
T Consensus 258 p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV 290 (355)
T PLN02739 258 PKIGDGALLGACVTILGNISIGAGAMVAAGSLV 290 (355)
T ss_pred cEECCCCEEcCCCEEeCCeEECCCCEECCCCEE
Confidence 4555555554 3444444555555555444433
No 207
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.33 E-value=5.2e-06 Score=79.82 Aligned_cols=69 Identities=23% Similarity=0.330 Sum_probs=40.4
Q ss_pred ceEECCCcEECCCCEEec--eEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-------------------eEECC
Q 043870 421 HSIVGIRSRLEYGVELKD--TMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-------------------CIIDK 479 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-------------------~iI~~ 479 (526)
++.||+++.|+.+|.|.+ .+.+|++ +.||.+|.|.. ++||+
T Consensus 75 ni~IG~~v~In~~~~I~d~~~I~IGd~------------------v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd 136 (203)
T PRK09527 75 NIHIGRNFYANFNLTIVDDYTVTIGDN------------------VLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGN 136 (203)
T ss_pred CcEEcCCcEECCCcEEecCCCEEECCC------------------CEECCCCEEEeCCCCCChhhccccccccCCeEECC
Confidence 566777777777777644 3667765 67777777741 34455
Q ss_pred CCEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 480 NAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 480 ~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
+|.||.+++|. ...++++++.|+.|+++
T Consensus 137 ~v~IG~~~~I~------~gv~IG~~~vIgagsvV 164 (203)
T PRK09527 137 NVWIGSHVVIN------PGVTIGDNSVIGAGSVV 164 (203)
T ss_pred CcEECCCCEEc------CCCEECCCCEECCCCEE
Confidence 55555554444 33455555555555544
No 208
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.32 E-value=5.7e-06 Score=77.36 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=46.8
Q ss_pred eEECCCCEEcc-eee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCC
Q 043870 406 SIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKN 480 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~ 480 (526)
..||++|+|+. +.+ ...+||+++.|+++|.|..+. ......+. ..- ..-..|+.||++|.|. +|+|.++
T Consensus 63 i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~---h~~~~~~~--~~~-~~~~~~v~IG~~~~Ig~~a~I~~g 136 (169)
T cd03357 63 IHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAG---HPLDPEER--NRG-LEYAKPITIGDNVWIGGGVIILPG 136 (169)
T ss_pred CEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCC---CCCChhHc--ccc-ceecCCcEeCCCEEECCCCEEeCC
Confidence 45666666653 333 256788888888888885431 00000000 000 0001247777777775 5777777
Q ss_pred CEECCCcEEccCCCcCC
Q 043870 481 AKIGKNVIIANKDGVEE 497 (526)
Q Consensus 481 ~~Ig~~~~i~~~~~v~~ 497 (526)
++||++++|+..+.+..
T Consensus 137 v~Ig~~~~VgagavV~~ 153 (169)
T cd03357 137 VTIGDNSVIGAGSVVTK 153 (169)
T ss_pred CEECCCCEECCCCEEcc
Confidence 77777777766655443
No 209
>PLN02357 serine acetyltransferase
Probab=98.32 E-value=1.9e-06 Score=88.68 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=56.5
Q ss_pred EECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECC
Q 043870 407 IISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGK 485 (526)
Q Consensus 407 ~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~ 485 (526)
.||.|++|... ..++||++++||++|.|..++++|.... ..|.+.+.||+|+.|. +|.|-.|++||+
T Consensus 234 ~IG~Gv~Idh~--~giVIGe~avIGdnV~I~~gVtIGg~g~----------~~g~~~piIGd~V~IGagA~IlggV~IGd 301 (360)
T PLN02357 234 KIGQGILLDHA--TGVVIGETAVVGNNVSILHNVTLGGTGK----------QSGDRHPKIGDGVLIGAGTCILGNITIGE 301 (360)
T ss_pred EECCCeEECCC--CceEECCCCEECCCCEEeCCceecCccc----------cCCccCceeCCCeEECCceEEECCeEECC
Confidence 34555555421 1367777777777777777777765210 1222346778887776 567767778888
Q ss_pred CcEEccCCCcCCccccCCCeEEccCcEEEC
Q 043870 486 NVIIANKDGVEEAERPSDGFYIRSGITVVL 515 (526)
Q Consensus 486 ~~~i~~~~~v~~~~~~~~~~~I~~g~~~i~ 515 (526)
+++|+....|.. +.+...+++|.=+.+|+
T Consensus 302 ga~IGAgSVV~~-dVP~~~~v~G~PArvv~ 330 (360)
T PLN02357 302 GAKIGAGSVVLK-DVPPRTTAVGNPARLIG 330 (360)
T ss_pred CCEECCCCEECc-ccCCCcEEECCCeEEEc
Confidence 888877766554 34444444444334444
No 210
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.30 E-value=3.5e-06 Score=84.26 Aligned_cols=29 Identities=34% Similarity=0.487 Sum_probs=23.9
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 492 (526)
|.||.|++|. ++.||+||.||+++++...
T Consensus 200 V~IGaga~Ilggv~IG~~a~IGAgSvV~~d 229 (273)
T PRK11132 200 VMIGAGAKILGNIEVGRGAKIGAGSVVLQP 229 (273)
T ss_pred cEEcCCCEEcCCCEECCCCEECCCCEECcc
Confidence 7888888886 5888888888888888753
No 211
>PRK10191 putative acyl transferase; Provisional
Probab=98.29 E-value=6.1e-06 Score=75.17 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=16.5
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccCCCc
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGV 495 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v 495 (526)
+.||++|.|. +|.|..+++||++++|+..+.+
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V 125 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNNVTVGAGSVV 125 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCCCEECCCCEE
Confidence 3555555555 3555555555555555544433
No 212
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.29 E-value=3.7e-06 Score=78.65 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=38.5
Q ss_pred ceEECCCcEECCCCEEe--ceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-------------eEECCCCEECC
Q 043870 421 HSIVGIRSRLEYGVELK--DTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-------------CIIDKNAKIGK 485 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-------------~iI~~~~~Ig~ 485 (526)
+..||+++.|+.++.|. ..+.+|++ +.|+++|.|.. ..+++.+.||+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~------------------v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~ 123 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDN------------------VLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGD 123 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCC------------------CEECCCCEEEeCCCCCChhHccccceecCCcEeCC
Confidence 45566666666666554 34556654 56666666631 12233344444
Q ss_pred CcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 486 NVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 486 ~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
+|.|+..+.+....+++++++|+.|+++
T Consensus 124 ~~~Ig~~a~I~~gv~Ig~~~~VgagavV 151 (169)
T cd03357 124 NVWIGGGVIILPGVTIGDNSVIGAGSVV 151 (169)
T ss_pred CEEECCCCEEeCCCEECCCCEECCCCEE
Confidence 4444433333344556666666666554
No 213
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.28 E-value=4.4e-06 Score=81.74 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=54.4
Q ss_pred CCcccCCCCCCCCeeecC-eeEe-eeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCC
Q 043870 383 QKPIFTSPRFLPPSKIEK-CRVQ-DSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEG 460 (526)
Q Consensus 383 ~~~i~~~~~~~~~~~i~~-~~i~-~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~ 460 (526)
.+.+...+.+++++.+-. ..|. ++.++.+|.|.. +.++|.++.||+||.|+.+..++.-. | -.+
T Consensus 114 ~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~----~as~G~~a~VGkn~higgGa~I~GVL-e---------p~~ 179 (271)
T COG2171 114 GAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDG----RASVGSCAQVGKNSHIGGGASIGGVL-E---------PLQ 179 (271)
T ss_pred ccEEeeccEECCCcEEcccceEEECcccCcceEEee----eeeeeccEEECCCcccCCcceEeEEe-c---------CCC
Confidence 333444444444444421 2221 356666666653 34444444444444444444333310 0 013
Q ss_pred CcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCcc
Q 043870 461 KVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAE 499 (526)
Q Consensus 461 ~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~ 499 (526)
..|+.||+||.|. |+.+..++.+|++|+|+....+.+.+
T Consensus 180 a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~t 219 (271)
T COG2171 180 ANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDT 219 (271)
T ss_pred CCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCc
Confidence 5789999999887 67677777777777776664444333
No 214
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.27 E-value=3e-06 Score=88.76 Aligned_cols=65 Identities=14% Similarity=0.204 Sum_probs=44.1
Q ss_pred ccCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEEC
Q 043870 378 HFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMG 443 (526)
Q Consensus 378 ~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~ 443 (526)
.++++.+.+ ..+.++++|.|.++++.+++|+++|.|+ .|.|.+|+|++++.|+.+|.|.++++..
T Consensus 284 ~~i~~~~~i-~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~ 349 (361)
T TIGR02091 284 KFVDSDAQV-VDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDK 349 (361)
T ss_pred eEecCCCEE-ECCEECCCCEECCCEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECC
Confidence 344555432 3456777777765577778888888887 4777888888888888888876555433
No 215
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.27 E-value=1.7e-06 Score=92.72 Aligned_cols=71 Identities=10% Similarity=0.225 Sum_probs=54.1
Q ss_pred eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcC
Q 043870 417 CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVE 496 (526)
Q Consensus 417 ~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~ 496 (526)
+.+.+|+||++|.| ++|.|++|+++.+ |.||++|+|.+|+|+.+|+||+++.|.++ .+.
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~~-ii~ 381 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRRC-VID 381 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEeeE-EEC
Confidence 45678999999999 7899998777666 89999999999999999999999999764 233
Q ss_pred CccccCCCeEEc
Q 043870 497 EAERPSDGFYIR 508 (526)
Q Consensus 497 ~~~~~~~~~~I~ 508 (526)
+.+++++++.|+
T Consensus 382 ~~~~i~~~~~i~ 393 (425)
T PRK00725 382 RGCVIPEGMVIG 393 (425)
T ss_pred CCCEECCCCEEC
Confidence 333444433333
No 216
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.26 E-value=2.6e-06 Score=89.58 Aligned_cols=63 Identities=19% Similarity=0.347 Sum_probs=37.0
Q ss_pred CCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECC
Q 043870 380 YDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 380 ~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~ 444 (526)
+.+++.+ +.+.++++|.|. +.+.+|+|+++|.|+ +|.|++|+|+++|.|++++.|.++++..+
T Consensus 281 i~~~~~i-~~~~Ig~~~~i~-~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~ 344 (369)
T TIGR02092 281 YAENSKV-ENSLVANGCIIE-GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKD 344 (369)
T ss_pred EcCCCEE-EEeEEcCCCEEe-eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCC
Confidence 3344444 334455666664 345566677777776 36666777777777777777766554433
No 217
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.26 E-value=4.1e-06 Score=71.26 Aligned_cols=19 Identities=26% Similarity=0.287 Sum_probs=9.7
Q ss_pred EeceEECCCCEECCCcEEc
Q 043870 472 IKNCIIDKNAKIGKNVIIA 490 (526)
Q Consensus 472 i~~~iI~~~~~Ig~~~~i~ 490 (526)
+..++|+++|.|+.++.+.
T Consensus 52 ~~~~~Ig~~~~Ig~~~~i~ 70 (101)
T cd03354 52 KRHPTIGDNVVIGAGAKIL 70 (101)
T ss_pred CCCCEECCCcEEcCCCEEE
Confidence 3445555555555555554
No 218
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.24 E-value=3.6e-06 Score=89.70 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=46.8
Q ss_pred CCCCCCCCeeecCeeEeeeEECCCCEEc-ceeeeceEECCCcEECCCCEEeceEEECC
Q 043870 388 TSPRFLPPSKIEKCRVQDSIISHGCFLR-ECSVEHSIVGIRSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 388 ~~~~~~~~~~i~~~~i~~s~Ig~~~~i~-~~~v~~s~ig~~~~I~~~~~i~~~v~~~~ 444 (526)
..+.++++|.|.++.|.+|+||++|.|+ .|.|++|+|+++|+|+++|.|.++++..+
T Consensus 314 ~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~ 371 (407)
T PRK00844 314 QDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKN 371 (407)
T ss_pred EeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCC
Confidence 3466788888877888889999999997 47888999999999999999988766554
No 219
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.23 E-value=7e-06 Score=78.44 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=31.8
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEe--ceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELK--DTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK 473 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 473 (526)
+.++.+|.+.........||+++.|++++.|. ..+.+|++ +.||+++.|.
T Consensus 50 v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~------------------v~Ig~~v~I~ 101 (192)
T PRK09677 50 FTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRD------------------TLIASKVFIT 101 (192)
T ss_pred eEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCC------------------CEECCCeEEE
Confidence 55555555521112357788888888888876 45667765 6677776665
No 220
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.22 E-value=7e-06 Score=77.77 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=50.0
Q ss_pred eeEECCCCEEcc-eeee---ceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECC
Q 043870 405 DSIISHGCFLRE-CSVE---HSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDK 479 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v~---~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~ 479 (526)
+..||++++|+. |.+- ...||++|.|+++|.|....-..+ . .++..- .+=..|+.||++|.|. +|+|..
T Consensus 73 ~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~---~--~~~~~~-~~~~~~v~IGd~v~IG~~a~I~~ 146 (183)
T PRK10092 73 NIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLD---P--VARNSG-AELGKPVTIGNNVWIGGRAVINP 146 (183)
T ss_pred CcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCC---h--HHcccc-ceecCCeEECCCcEECCCCEECC
Confidence 455666666653 3331 237788888888877753211000 0 000000 0001358888888885 688888
Q ss_pred CCEECCCcEEccCCCcCC
Q 043870 480 NAKIGKNVIIANKDGVEE 497 (526)
Q Consensus 480 ~~~Ig~~~~i~~~~~v~~ 497 (526)
+++||++++|+....+..
T Consensus 147 gv~IG~~~vIgagsvV~~ 164 (183)
T PRK10092 147 GVTIGDNVVVASGAVVTK 164 (183)
T ss_pred CCEECCCCEECCCCEEcc
Confidence 888888888877765543
No 221
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=98.21 E-value=7.3e-05 Score=86.16 Aligned_cols=215 Identities=19% Similarity=0.227 Sum_probs=136.9
Q ss_pred eEEEEcCCeecccC--HHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEEcCC--CCeeeeeccCCccccccccccccc
Q 043870 215 NILILSGDHLYRMD--YMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDET--GRIRQFLEKPKGENLRSMQIDTTA 290 (526)
Q Consensus 215 ~~lil~gD~l~~~d--l~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~~--g~V~~~~eKp~~~~~~~~~~~~~~ 290 (526)
.+||.+||.+..++ +.+ -.++|++......+.+-.+..|+...|.+ +++..|..||.-++..++.
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~----- 222 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLS----- 222 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhh-----
Confidence 58999999866554 221 23466666666666666788999999887 6889999999876542221
Q ss_pred cccchhhhcCCCceeeeeEEEEcHHHHHHHHHhhCCC------CCChhhchHhhhh----------cCCcEEEEEec-ce
Q 043870 291 LGLSAQEARNFPYIASMGIYLFKTEVLLKVLRWHYPE------ANDFGSEVIPMAT----------KDFNVQAYLFN-DY 353 (526)
Q Consensus 291 l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~~~~~------~~d~~~dil~~li----------~~~~V~~~~~~-~~ 353 (526)
.....+.++|+|+|+.+....+++..+.+ .-|+.+|++..+- +..++...... +.
T Consensus 223 --------~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~ 294 (974)
T PRK13412 223 --------KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGE 294 (974)
T ss_pred --------cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCce
Confidence 12456899999999999887777654322 1234455555532 23456666665 56
Q ss_pred eeecCChhhHHHhchhhcCCCCC-cccCCCCCcccCCCCCCCCeeecCeeEeeeEECCCCEEcce--eeeceEECCCcEE
Q 043870 354 WEDIGTIKSFFDANLSLTDKPPK-FHFYDPQKPIFTSPRFLPPSKIEKCRVQDSIISHGCFLREC--SVEHSIVGIRSRL 430 (526)
Q Consensus 354 w~dIgt~~d~~~An~~ll~~~~~-~~~~~~~~~i~~~~~~~~~~~i~~~~i~~s~Ig~~~~i~~~--~v~~s~ig~~~~I 430 (526)
++.+||-.+|+.....+-..... ...+..+. .+. ..+.+.+|.++.++.+++. -|++|.||.+++|
T Consensus 295 F~H~GTs~E~l~~~~~~q~~~~~~~~i~~~~~--------~~~---~~~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~i 363 (974)
T PRK13412 295 FYHYGTSRELISSTLAVQNLVTDQRRIMHRKV--------KPH---PAMFVQNAVLSGKLTAENATLWIENSHVGEGWKL 363 (974)
T ss_pred eEEecCcHHHhcCchhHHHHhhhhhhhhcccc--------CCC---CceEEEeeEecCCcccCCCeEEEEeeEecCCeEE
Confidence 99999999999755443221100 00111111 110 1234567889999999864 3588999999999
Q ss_pred CCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEE
Q 043870 431 EYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCII 477 (526)
Q Consensus 431 ~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI 477 (526)
|++|+|.+.-..+-+ ..|-+++.|...=+
T Consensus 364 g~~~Iisgv~~~~~~------------------~~vP~~~ci~~vpl 392 (974)
T PRK13412 364 ASRSIITGVPENSWN------------------LDLPEGVCIDVVPV 392 (974)
T ss_pred cCCcEEecccccccc------------------eecCCCcEEEEEEc
Confidence 999999776433322 56777777765433
No 222
>PRK10191 putative acyl transferase; Provisional
Probab=98.20 E-value=4.3e-06 Score=76.17 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=20.8
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 492 (526)
+.||.++.|. ++.|+++|.||+++++...
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence 6777777776 4777777777777777765
No 223
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.20 E-value=7.5e-06 Score=87.23 Aligned_cols=97 Identities=20% Similarity=0.393 Sum_probs=63.8
Q ss_pred CeEEEEcCCeecccCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEEcCCC---------CeeeeeccCCccccccc
Q 043870 214 ENILILSGDHLYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKIDETG---------RIRQFLEKPKGENLRSM 284 (526)
Q Consensus 214 e~~lil~gD~l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~~g---------~V~~~~eKp~~~~~~~~ 284 (526)
.-++|.++|+++...-...+. + .+++++++..+.+..-++..|+.++|+++ .+..|..||.......
T Consensus 54 pGv~V~s~D~vl~~~~~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~- 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRA- 129 (414)
T ss_pred cceEEEecccccccCccccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHh-
Confidence 358999999543332112221 2 23677888888877777889999999988 8999999998764311
Q ss_pred cccccccccchhhhcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 285 QIDTTALGLSAQEARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 285 ~~~~~~l~~s~~~~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
...+ ........++|++.|+.+....++..
T Consensus 130 --~~av-------~~~~~~~ldsG~~~~s~~~~e~L~~~ 159 (414)
T PF07959_consen 130 --SGAV-------LPDGNVLLDSGIVFFSSKAVESLLYL 159 (414)
T ss_pred --CCcc-------cCCCcccccccceeccHHHHHHHHHh
Confidence 1100 01134466899999999877766543
No 224
>PLN02739 serine acetyltransferase
Probab=98.20 E-value=3.2e-06 Score=86.40 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=34.5
Q ss_pred ceEECCCcEECCCCEEece--------EEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEcc
Q 043870 421 HSIVGIRSRLEYGVELKDT--------MMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIAN 491 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~--------v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~ 491 (526)
+++||++|.|..+++|+++ ..+|++ |.||.|++|. ++.||+||.||+|+++..
T Consensus 231 ~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~------------------V~IGagA~IlG~V~IGd~aiIGAGSVV~k 292 (355)
T PLN02739 231 TAVIGDRVSILHGVTLGGTGKETGDRHPKIGDG------------------ALLGACVTILGNISIGAGAMVAAGSLVLK 292 (355)
T ss_pred CCEECCCCEEcCCceeCCcCCcCCCCCcEECCC------------------CEEcCCCEEeCCeEECCCCEECCCCEECC
Confidence 6666666666666666532 445544 6777777764 477777777777777764
Q ss_pred C
Q 043870 492 K 492 (526)
Q Consensus 492 ~ 492 (526)
.
T Consensus 293 D 293 (355)
T PLN02739 293 D 293 (355)
T ss_pred C
Confidence 3
No 225
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.20 E-value=6.8e-06 Score=77.01 Aligned_cols=79 Identities=24% Similarity=0.369 Sum_probs=46.2
Q ss_pred ECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCC
Q 043870 408 ISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKN 486 (526)
Q Consensus 408 Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~ 486 (526)
||+|.+|..+ ...+||+.++||++|.|..++.+|..--+.+ -.+-.+.+| |.||.|++|- |-.||+|++||+|
T Consensus 76 IG~g~fIdHg--~GvVIgeta~IGddv~I~~gVTLGgtg~~~g-~RhPtIg~~---V~IGagAkILG~I~IGd~akIGA~ 149 (194)
T COG1045 76 IGRGLFIDHG--TGVVIGETAVIGDDVTIYHGVTLGGTGKESG-KRHPTIGNG---VYIGAGAKILGNIEIGDNAKIGAG 149 (194)
T ss_pred ECCceEEcCC--ceEEEcceeEECCCeEEEcceEecCCCCcCC-CCCCccCCC---eEECCCCEEEcceEECCCCEECCC
Confidence 4444444321 1346666666666666666666665211111 111122222 7888888875 6889999999999
Q ss_pred cEEccC
Q 043870 487 VIIANK 492 (526)
Q Consensus 487 ~~i~~~ 492 (526)
+++...
T Consensus 150 sVVlkd 155 (194)
T COG1045 150 SVVLKD 155 (194)
T ss_pred ceEccC
Confidence 998765
No 226
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.17 E-value=2.5e-06 Score=83.42 Aligned_cols=100 Identities=20% Similarity=0.253 Sum_probs=73.2
Q ss_pred CCCCCCeeecCeeEeeeEECCCCEEcc-eee-eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEEC
Q 043870 390 PRFLPPSKIEKCRVQDSIISHGCFLRE-CSV-EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIG 467 (526)
Q Consensus 390 ~~~~~~~~i~~~~i~~s~Ig~~~~i~~-~~v-~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig 467 (526)
+|+.|++.+-. .+.|++|++|-. +.| -++.++.++.|+-+++++.|+.+|.+ +.||
T Consensus 109 ~RI~p~a~VR~----ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn------------------~hig 166 (271)
T COG2171 109 VRIVPGAIVRL----GAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKN------------------SHIG 166 (271)
T ss_pred eeecCccEEee----ccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCC------------------cccC
Confidence 56666666532 478888888865 556 67889999999999999988888886 7888
Q ss_pred CCCEEe--------c-eEECCCCEECCCcEEccCCCcCCccccCCCeEEccCc
Q 043870 468 RDTKIK--------N-CIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGI 511 (526)
Q Consensus 468 ~~~~i~--------~-~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~ 511 (526)
-++.|. + ++|++||.||+|+++.-...+.+.+.++-|+||..++
T Consensus 167 gGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~t 219 (271)
T COG2171 167 GGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDT 219 (271)
T ss_pred CcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCc
Confidence 888886 3 7899999999998665554455555555555555443
No 227
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.17 E-value=4.2e-05 Score=71.90 Aligned_cols=97 Identities=12% Similarity=0.175 Sum_probs=63.7
Q ss_pred CCccceeeCC--cchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCcc
Q 043870 113 RAKPAVPIGG--CYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKW 190 (526)
Q Consensus 113 ~pK~LlpV~g--~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~ 190 (526)
.+|+|+++.| + |||+++++.+. ..+++|+|+++... . +. .+ + +.++.+...
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~~-~----~~-~~--------~---~~~i~d~~~-------- 55 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPGQ-P----LP-EL--------P---APVLRDELR-------- 55 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCCc-c----cc-cC--------C---CCEeccCCC--------
Confidence 5899999999 9 99999999866 46899999998642 1 11 00 1 223332221
Q ss_pred ccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHc
Q 043870 191 FQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINS 239 (526)
Q Consensus 191 ~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~ 239 (526)
..|...++..++..... ...+.+++++||+ ++..+ +..+++.+...
T Consensus 56 g~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 56 GLGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAAQT 103 (178)
T ss_pred CCCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 15777777766654421 2348899999999 66666 56666654433
No 228
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.16 E-value=0.00016 Score=73.42 Aligned_cols=214 Identities=11% Similarity=0.186 Sum_probs=126.4
Q ss_pred ceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc----CC-cEEEEEecc-ChhHHHHHhhhcccCCC
Q 043870 92 AVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS----GI-KKIYILTQF-NSQSLNRHISRTYNLGD 165 (526)
Q Consensus 92 ~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~----gi-~~I~Iv~~~-~~~~l~~~l~~~~~~~~ 165 (526)
++.+|+||||.||||+ ...||.|+||....+++|..++++... |. =..+|.+++ ..+...++|.+ ++...
T Consensus 3 kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~-~~~~~ 78 (300)
T cd00897 3 KLVVLKLNGGLGTSMG---CTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKK-YAGVN 78 (300)
T ss_pred cEEEEEecCCcccccC---CCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHH-cCCCc
Confidence 5788999999999998 678999999954448999999998752 32 246666664 45577888875 32211
Q ss_pred -Cc-ccCCCeEEEEec------ccccCcCCCcc-ccChHHHHHHHH--HHhhhhccCCCCeEEEEcCCeecccCHHHHHH
Q 043870 166 -GM-NFGDGFVEVLAA------TQRQGESGKKW-FQGTADAVRQFI--WMFEDAKHRNIENILILSGDHLYRMDYMDFVQ 234 (526)
Q Consensus 166 -~~-~~~~~~v~vl~~------~~~~~~~~~~~-~~Gt~~al~~~~--~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~ 234 (526)
.+ .|..+.+.-+.. ..........| |.|.++-..... ..+++.+.+..+.+.+.+.|.+...-=..++-
T Consensus 79 ~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg 158 (300)
T cd00897 79 VDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILN 158 (300)
T ss_pred cCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHH
Confidence 11 011111110000 00000011122 356655443332 22444444678999999999976543345777
Q ss_pred HHHHcCCcEEEEEEEccCCcCCCceEEEE-cCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEEEEc
Q 043870 235 HHINSGGDISVCCLPVDESRASDFGLMKI-DETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIYLFK 313 (526)
Q Consensus 235 ~h~~~~ad~ti~~~~~~~~~~~~~g~v~~-d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giyif~ 313 (526)
.|.++++++++=+.+...+. .+=|.+.. |..=+|.++.+-|..... ..+ + ...-.+.+++.++|+
T Consensus 159 ~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~-~~~-~-----------~~~~~~~nt~n~~~~ 224 (300)
T cd00897 159 HMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVD-EFK-S-----------IKKFKIFNTNNLWVN 224 (300)
T ss_pred HHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHH-hhc-C-----------cccceEEEEeEEEEE
Confidence 78889999887665544322 23454443 433357888887764310 000 0 002347899999999
Q ss_pred HHHHHHHHHh
Q 043870 314 TEVLLKVLRW 323 (526)
Q Consensus 314 ~~~l~~ll~~ 323 (526)
-+.|.++++.
T Consensus 225 l~~L~~~~~~ 234 (300)
T cd00897 225 LKAVKRVVEE 234 (300)
T ss_pred HHHHHHHHHh
Confidence 9988877653
No 229
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.15 E-value=6.6e-06 Score=85.01 Aligned_cols=70 Identities=20% Similarity=0.404 Sum_probs=55.7
Q ss_pred eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcC
Q 043870 417 CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVE 496 (526)
Q Consensus 417 ~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~ 496 (526)
+.|++|.|+.+|.|. | +|.+|++..+ +.|+++|.|.+|+|-.+|.||+||+|.++ -+.
T Consensus 292 s~v~nSLv~~GciI~-G-~V~nSVL~~~-------------------v~I~~gs~i~~svim~~~~IG~~~~l~~a-IID 349 (393)
T COG0448 292 SEVSNSLVAGGCIIS-G-TVENSVLFRG-------------------VRIGKGSVIENSVIMPDVEIGEGAVLRRA-IID 349 (393)
T ss_pred ceEeeeeeeCCeEEE-e-EEEeeEEecC-------------------eEECCCCEEEeeEEeCCcEECCCCEEEEE-EeC
Confidence 345789999999997 4 9999999887 89999999999999999999999999875 233
Q ss_pred CccccCCCeEEc
Q 043870 497 EAERPSDGFYIR 508 (526)
Q Consensus 497 ~~~~~~~~~~I~ 508 (526)
++.++++|+.|+
T Consensus 350 k~v~I~~g~~i~ 361 (393)
T COG0448 350 KNVVIGEGVVIG 361 (393)
T ss_pred CCcEeCCCcEEc
Confidence 343334444333
No 230
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.15 E-value=0.00044 Score=66.79 Aligned_cols=176 Identities=24% Similarity=0.273 Sum_probs=101.6
Q ss_pred EEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcccCCC
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDG 172 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~ 172 (526)
.|||+|-|.++|+. -|.|.+++|+ |||+|+++++.+++ +++|+|.|... ++.+.+. .| + .
T Consensus 1 iaiIpAR~gS~rlp------~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd~~--~i~~~~~-~~--------g-~ 61 (217)
T PF02348_consen 1 IAIIPARGGSKRLP------GKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATDDE--EIDDIAE-EY--------G-A 61 (217)
T ss_dssp EEEEEE-SSSSSST------TGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEESSH--HHHHHHH-HT--------T-S
T ss_pred CEEEecCCCCCCCC------cchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCCCH--HHHHHHH-Hc--------C-C
Confidence 38999999999998 7999999999 99999999999985 79988888653 3344443 33 1 1
Q ss_pred eEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCc-EEEEEEE
Q 043870 173 FVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGD-ISVCCLP 249 (526)
Q Consensus 173 ~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad-~ti~~~~ 249 (526)
.+.+.... . ..++ .....+...+.. ...+.++.+.||. +.+.. +.++++.+.+..++ +.-.+.+
T Consensus 62 ~v~~~~~~-~--------~~~~-~r~~~~~~~~~~---~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~ 128 (217)
T PF02348_consen 62 KVIFRRGS-L--------ADDT-DRFIEAIKHFLA---DDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDP 128 (217)
T ss_dssp EEEE--TT-S--------SSHH-HHHHHHHHHHTC---STTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEE
T ss_pred eeEEcChh-h--------cCCc-ccHHHHHHHhhh---hHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhcccccc
Confidence 13222211 1 1233 333333333321 1234788999999 66554 88999998888776 3222332
Q ss_pred ccC----CcCCCceEEEEcCCCCeeeeeccCCccccccccccccccccchhhhcC-CCceeeeeEEEEcHH
Q 043870 250 VDE----SRASDFGLMKIDETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARN-FPYIASMGIYLFKTE 315 (526)
Q Consensus 250 ~~~----~~~~~~g~v~~d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~-~~~l~~~Giyif~~~ 315 (526)
... ...... ....+.++....+.+.+..... .+.... ..++...++|.+++.
T Consensus 129 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 185 (217)
T PF02348_consen 129 VGSSVEIFNFNPL-KVLFDDDGLELYFSEHVIPYIR-------------RNPEEFKYFYIRQVGIYAFRKE 185 (217)
T ss_dssp ECSHHHHTSTTST-EEEECTTSBEEEEESSESSECH-------------HHHCSSSSTEEEEEEEEEEEHH
T ss_pred ccchhhcccccce-EEEeccccchhhcccCCCcccc-------------cccccccccccccccccccccc
Confidence 221 111111 2233444555555554443211 000000 135778999999997
No 231
>PLN02830 UDP-sugar pyrophosphorylase
Probab=98.15 E-value=0.00065 Score=75.32 Aligned_cols=222 Identities=14% Similarity=0.136 Sum_probs=127.8
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceee---CCcchhHHHHHHHHHhc--------C----CcEEEEEecc-ChhHHH
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPI---GGCYRLIDVPMSNCINS--------G----IKKIYILTQF-NSQSLN 154 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV---~g~~pLI~~~l~~l~~~--------g----i~~I~Iv~~~-~~~~l~ 154 (526)
.++.+|+||||.||||+ ...||.++|+ .|+ ++++..++++... + .-.++|.+.+ ..+...
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 56889999999999999 6789999998 377 9999999997653 1 1246777774 445777
Q ss_pred HHhhhcccCCCC---cc-cCCCeEEEEecc-ccc-----CcCCC-ccccChHHHHHHHH--HHhhhhccCCCCeEEEEcC
Q 043870 155 RHISRTYNLGDG---MN-FGDGFVEVLAAT-QRQ-----GESGK-KWFQGTADAVRQFI--WMFEDAKHRNIENILILSG 221 (526)
Q Consensus 155 ~~l~~~~~~~~~---~~-~~~~~v~vl~~~-~~~-----~~~~~-~~~~Gt~~al~~~~--~~i~~~~~~~~e~~lil~g 221 (526)
++|.+.-.|+.. +. |....+..+... ... +...- ..|.|.++-..... ..++++..+..+.+.+.+.
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~v 282 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQD 282 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEec
Confidence 888754323321 11 111222222211 000 00001 12456654433332 3355555578899999999
Q ss_pred Ce-ecccCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEE--cCCCC----eeeeeccCCccccccccccccccccc
Q 043870 222 DH-LYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKI--DETGR----IRQFLEKPKGENLRSMQIDTTALGLS 294 (526)
Q Consensus 222 D~-l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~--d~~g~----V~~~~eKp~~~~~~~~~~~~~~l~~s 294 (526)
|. +.......++-.+...++++.+-+.+... ...-|++.. ..+|+ +++|.|.+..- +..+.+..-+.-
T Consensus 283 DN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll--~~a~~p~g~l~~- 357 (615)
T PLN02830 283 TNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLL--RATGHPDGDVND- 357 (615)
T ss_pred cchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHH--HhccCCCccccc-
Confidence 99 44444578888888899998887776533 234566554 23344 34555554321 001111000000
Q ss_pred hhhhcCCCceeeeeEEEEcHHHHHHHHHh
Q 043870 295 AQEARNFPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 295 ~~~~~~~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
.+. .+.+..|+...+++-..+.+.|+.
T Consensus 358 ~~~--~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 358 ETG--YSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred ccc--cccCCCCceeeEeeHHHHHHHHHh
Confidence 000 133345888899998887777764
No 232
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.15 E-value=1.1e-05 Score=69.61 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=46.7
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEEC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig 484 (526)
+.|+++|.|.. .....||++|.|++++.|.... .++.... ...-..|+.||++|.|. +|+|..+++||
T Consensus 10 ~~I~~~~~i~~--~~~i~IG~~~~I~~~~~I~~~~---h~~~~~~------~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig 78 (107)
T cd05825 10 SWIGEGVWIYN--LAPVTIGSDACISQGAYLCTGS---HDYRSPA------FPLITAPIVIGDGAWVAAEAFVGPGVTIG 78 (107)
T ss_pred CEECCCCEEee--CCceEECCCCEECCCeEeecCC---CCCCcCc------cceecCCEEECCCCEECCCCEECCCCEEC
Confidence 44444444431 1246778888888777775321 1110000 00012358888888887 58888888888
Q ss_pred CCcEEccCCCcCC
Q 043870 485 KNVIIANKDGVEE 497 (526)
Q Consensus 485 ~~~~i~~~~~v~~ 497 (526)
++++|+....+.+
T Consensus 79 ~~~~i~~gs~v~~ 91 (107)
T cd05825 79 EGAVVGARSVVVR 91 (107)
T ss_pred CCCEECCCCEEeC
Confidence 8888877765554
No 233
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=7.7e-06 Score=85.66 Aligned_cols=87 Identities=22% Similarity=0.224 Sum_probs=65.7
Q ss_pred CcccCCCCCCCCeee-cCeeEe-eeEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCC
Q 043870 384 KPIFTSPRFLPPSKI-EKCRVQ-DSIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEG 460 (526)
Q Consensus 384 ~~i~~~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~ 460 (526)
+.+.+.+.+++.+.| .++.|. ++.||++|.|++ +.|.+|+|.++|+|++++.|.++++..+
T Consensus 256 ~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~---------------- 319 (358)
T COG1208 256 AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGEN---------------- 319 (358)
T ss_pred ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCC----------------
Confidence 445556666666666 334444 499999999985 6789999999999999999999998887
Q ss_pred CcceEECCCCEEeceEECCCCEECCCcEEccCCCc
Q 043870 461 KVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGV 495 (526)
Q Consensus 461 ~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v 495 (526)
+.||.++ .|++ +.+|.++.+.....+
T Consensus 320 ---~~ig~~~-----~i~d-~~~g~~~~i~~g~~~ 345 (358)
T COG1208 320 ---CKIGASL-----IIGD-VVIGINSEILPGVVV 345 (358)
T ss_pred ---cEECCce-----eecc-eEecCceEEcCceEe
Confidence 7888822 2777 777777777665433
No 234
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.13 E-value=0.00015 Score=77.15 Aligned_cols=217 Identities=19% Similarity=0.268 Sum_probs=125.0
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHh----cCC-cEEEEEec-cChhHHHHHhhhcccC
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCIN----SGI-KKIYILTQ-FNSQSLNRHISRTYNL 163 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~----~gi-~~I~Iv~~-~~~~~l~~~l~~~~~~ 163 (526)
..++.+|+||||.||||+ ...||.++||.....+++..++++.. .|. -..+|.+. ...+++.+++.+.+++
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~ 130 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGL 130 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGS
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCC
Confidence 456899999999999998 67899999996554899988888775 232 24566666 5566888899872222
Q ss_pred CCCcc-cCCCeEEEEecccccC-c-CC------Ccc-ccChHHHHHHHH--HHhhhhccCCCCeEEEEcCCeecccCHHH
Q 043870 164 GDGMN-FGDGFVEVLAATQRQG-E-SG------KKW-FQGTADAVRQFI--WMFEDAKHRNIENILILSGDHLYRMDYMD 231 (526)
Q Consensus 164 ~~~~~-~~~~~v~vl~~~~~~~-~-~~------~~~-~~Gt~~al~~~~--~~i~~~~~~~~e~~lil~gD~l~~~dl~~ 231 (526)
...+. |....+..+....... + .. ..| |.|.++-..... ..+++...+..+.+.+.+.|.+...-=..
T Consensus 131 ~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~ 210 (420)
T PF01704_consen 131 DVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPV 210 (420)
T ss_dssp SCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HH
T ss_pred CcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHH
Confidence 21111 1112222221111000 0 00 123 446665443332 24444445788999999999976554456
Q ss_pred HHHHHHHcCCcEEEEEEEccCCcCCCceEEEE-cCCCCeeeeeccCCccccccccccccccccchhhhcCCCceeeeeEE
Q 043870 232 FVQHHINSGGDISVCCLPVDESRASDFGLMKI-DETGRIRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIY 310 (526)
Q Consensus 232 ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~-d~~g~V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giy 310 (526)
++-.+.+.++++.+-+.+..... ..-|++.. +..-+|.++.+-|..... .+. ......+.++|-.
T Consensus 211 ~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~~~G~~~vvEysqip~~~~~-~~~------------~~~~~~~FntnNi 276 (420)
T PF01704_consen 211 FLGYMIEKNADFGMEVVPKTSPD-EKGGVLCRYDGKLQVVEYSQIPKEHMA-EFK------------DIKGFLLFNTNNI 276 (420)
T ss_dssp HHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEEETTEEEEEEGGGS-HHGHH-HHT------------STTTSBEEEEEEE
T ss_pred HHHHHHhccchhheeeeecCCCC-CceeEEEEeCCccEEEEeccCCHHHHH-hhh------------ccccceEEEecee
Confidence 77888888999988777754322 23455543 322346677666554210 000 0012356788888
Q ss_pred EEcHHHHHHHHHh
Q 043870 311 LFKTEVLLKVLRW 323 (526)
Q Consensus 311 if~~~~l~~ll~~ 323 (526)
+|+-+.+.++++.
T Consensus 277 ~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 277 WFSLDFLKRLLER 289 (420)
T ss_dssp EEEHHHHHHHHHT
T ss_pred eEEHHHHHHHHHh
Confidence 9999999888765
No 235
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.12 E-value=1.4e-05 Score=68.46 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=23.0
Q ss_pred EECCCCEEcc-eee---eceEECCCcEECCCCEEece
Q 043870 407 IISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDT 439 (526)
Q Consensus 407 ~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~ 439 (526)
.||++|+|++ +.+ ..+.||++|.|+++|.|.++
T Consensus 3 ~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 3 SIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred EECCCcEECCCCEEecCCceEECCCCEECCCCEEECC
Confidence 4555555553 333 26889999999999998876
No 236
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.12 E-value=3.1e-05 Score=66.65 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=6.9
Q ss_pred eEECCCCEECCCcEEc
Q 043870 475 CIIDKNAKIGKNVIIA 490 (526)
Q Consensus 475 ~iI~~~~~Ig~~~~i~ 490 (526)
++|+++|.||.++.|.
T Consensus 57 v~Ig~~~~ig~~~~i~ 72 (107)
T cd05825 57 IVIGDGAWVAAEAFVG 72 (107)
T ss_pred EEECCCCEECCCCEEC
Confidence 3444444444444443
No 237
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.05 E-value=4.6e-05 Score=76.24 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=6.9
Q ss_pred CcceEECCCCEEe
Q 043870 461 KVPVGIGRDTKIK 473 (526)
Q Consensus 461 ~~~~~Ig~~~~i~ 473 (526)
+.|+.||++|.|.
T Consensus 223 ~~pV~IGe~~~IG 235 (319)
T TIGR03535 223 KEVISIGERCLLG 235 (319)
T ss_pred cccEEECCCcEEC
Confidence 4455555555554
No 238
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.04 E-value=3.6e-05 Score=65.43 Aligned_cols=27 Identities=41% Similarity=0.583 Sum_probs=12.7
Q ss_pred eEECCCCEEec-eEECCCCEECCCcEEc
Q 043870 464 VGIGRDTKIKN-CIIDKNAKIGKNVIIA 490 (526)
Q Consensus 464 ~~Ig~~~~i~~-~iI~~~~~Ig~~~~i~ 490 (526)
+.|+.++.+.. +.|+++|.|+++++|.
T Consensus 61 ~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 61 VVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred cEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 34444444433 4455555555555544
No 239
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.03 E-value=4.6e-05 Score=65.17 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=14.5
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEccC
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIANK 492 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~ 492 (526)
+.||++|.|. +++|..+++||+++.++..
T Consensus 59 ~~Ig~~~~ig~~~~i~~~~~ig~~~~i~~~ 88 (109)
T cd04647 59 IVIGDDVWIGANVVILPGVTIGDGAVVGAG 88 (109)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEECCC
Confidence 4555555552 3455555555555555443
No 240
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.01 E-value=2.3e-05 Score=74.23 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=15.0
Q ss_pred CEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 481 AKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 481 ~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
+.||++|.|+..+.+....++|+++.|+.|+++
T Consensus 130 v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV 162 (183)
T PRK10092 130 VTIGNNVWIGGRAVINPGVTIGDNVVVASGAVV 162 (183)
T ss_pred eEECCCcEECCCCEECCCCEECCCCEECCCCEE
Confidence 333333333333333334455555666555443
No 241
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.98 E-value=0.00029 Score=75.90 Aligned_cols=216 Identities=19% Similarity=0.246 Sum_probs=125.8
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeC---CcchhHHHHHHHHHhc--------------CC-cEEEEEec-cChh
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIG---GCYRLIDVPMSNCINS--------------GI-KKIYILTQ-FNSQ 151 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~---g~~pLI~~~l~~l~~~--------------gi-~~I~Iv~~-~~~~ 151 (526)
.++.+|+||||.||||+ ...||.|++|+ ++ ++++...+++... +. =..+|.+. ...+
T Consensus 115 gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~ 190 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDE 190 (493)
T ss_pred CCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhH
Confidence 56788999999999999 77899999884 77 8999998886431 11 14577777 4555
Q ss_pred HHHHHhhhcccCCCC---cc-cCCCeEEEEeccc-----ccCcCCCccccChHHHHHHHHH--HhhhhccCCCCeEEEEc
Q 043870 152 SLNRHISRTYNLGDG---MN-FGDGFVEVLAATQ-----RQGESGKKWFQGTADAVRQFIW--MFEDAKHRNIENILILS 220 (526)
Q Consensus 152 ~l~~~l~~~~~~~~~---~~-~~~~~v~vl~~~~-----~~~~~~~~~~~Gt~~al~~~~~--~i~~~~~~~~e~~lil~ 220 (526)
.+.++|.+.-.|+-. +. |..+.+..+.... .+. .-...|.|+++-...... .+++.+.+..+.+.+.+
T Consensus 191 ~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~-~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~ 269 (493)
T PLN02435 191 ATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPF-KVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYG 269 (493)
T ss_pred HHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCc-ccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEe
Confidence 788888754324321 11 1111111111000 000 001224677655443332 35555557889999999
Q ss_pred CCe-ecccCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEE-cCCCC--eeeeeccCCccccccccccccccccchh
Q 043870 221 GDH-LYRMDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKI-DETGR--IRQFLEKPKGENLRSMQIDTTALGLSAQ 296 (526)
Q Consensus 221 gD~-l~~~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~-d~~g~--V~~~~eKp~~~~~~~~~~~~~~l~~s~~ 296 (526)
.|. +...---.++-.+...++++.+-+.+...+. ..-|++.. +.+|+ |++|.|-+....... .-+++.|
T Consensus 270 vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~-EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~-~~~~g~L----- 342 (493)
T PLN02435 270 VDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQ-EKVGVFVRRGKGGPLTVVEYSELDQAMASAI-NQQTGRL----- 342 (493)
T ss_pred cccccccccCHHHHHHHHhcCCceEEEeeecCCCC-CceeEEEEecCCCCEEEEEeccCCHHHHhcc-Ccccccc-----
Confidence 999 4545445667777888999887665543221 23466654 34554 666666543210000 0011111
Q ss_pred hhcCCCceeeeeEEEEcHHHHHHHHH
Q 043870 297 EARNFPYIASMGIYLFKTEVLLKVLR 322 (526)
Q Consensus 297 ~~~~~~~l~~~Giyif~~~~l~~ll~ 322 (526)
.-+..+++.++|+-++|..+.+
T Consensus 343 ----~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 343 ----RYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred ----ccchhhHHHhhccHHHHHHHHH
Confidence 2356788889999999987653
No 242
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=0.00069 Score=64.80 Aligned_cols=116 Identities=23% Similarity=0.391 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChh--HHHHHhhhcccCCCCccc
Q 043870 93 VASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQ--SLNRHISRTYNLGDGMNF 169 (526)
Q Consensus 93 ~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~--~l~~~l~~~~~~~~~~~~ 169 (526)
+.+||-|-=.+|||. -|.|+|++|+ |||+++|+++..+. +++++|.|....+ .+.++.. .+
T Consensus 4 I~~IiQARmgStRLp------gKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~-~~-------- 67 (241)
T COG1861 4 ILVIIQARMGSTRLP------GKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCR-SH-------- 67 (241)
T ss_pred EEEEeeecccCccCC------cchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHH-Hc--------
Confidence 444444444567887 7999999999 99999999999885 6899999986655 3444443 21
Q ss_pred CCCeEEEEecccccCcCCCccccChH-HHHHHHHHHhhhhccCCCCeEEEEcCCe-ecccC-HHHHHHHHHHcCCcEE
Q 043870 170 GDGFVEVLAATQRQGESGKKWFQGTA-DAVRQFIWMFEDAKHRNIENILILSGDH-LYRMD-YMDFVQHHINSGGDIS 244 (526)
Q Consensus 170 ~~~~v~vl~~~~~~~~~~~~~~~Gt~-~al~~~~~~i~~~~~~~~e~~lil~gD~-l~~~d-l~~ll~~h~~~~ad~t 244 (526)
+ +.+. .|.. +.|..+...++. ...+.++=+.||. +.+.. +...++.|-++++|.+
T Consensus 68 --G-~~vf--------------rGs~~dVL~Rf~~a~~a---~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~ 125 (241)
T COG1861 68 --G-FYVF--------------RGSEEDVLQRFIIAIKA---YSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYV 125 (241)
T ss_pred --C-eeEe--------------cCCHHHHHHHHHHHHHh---cCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccc
Confidence 1 2221 3433 445555555542 3457888899999 77777 5778899999998754
No 243
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.97 E-value=0.00023 Score=72.67 Aligned_cols=219 Identities=11% Similarity=0.084 Sum_probs=125.6
Q ss_pred EEEEEcCCCCccccCccCCCCccceee---CCcchhHHHHHHHHHhcC---------CcEEEEEec-cChhHHHHHhhhc
Q 043870 94 ASIILGGGAGTRLFPLTGRRAKPAVPI---GGCYRLIDVPMSNCINSG---------IKKIYILTQ-FNSQSLNRHISRT 160 (526)
Q Consensus 94 ~aIILAaG~GtRl~Plt~~~pK~LlpV---~g~~pLI~~~l~~l~~~g---------i~~I~Iv~~-~~~~~l~~~l~~~ 160 (526)
.+|+||||.||||+ ...||.++|| .|+ ++++..++++.... .-.++|.+. ...+++.+++.+.
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 57899999999999 7889999999 578 99999999987532 125677777 4555778888754
Q ss_pred ccCCCC---cc-cCCCeEEEEecccccC-------cCCCccccChHHHHHHHH--HHhhhhccCCCCeEEEEcCCe-ecc
Q 043870 161 YNLGDG---MN-FGDGFVEVLAATQRQG-------ESGKKWFQGTADAVRQFI--WMFEDAKHRNIENILILSGDH-LYR 226 (526)
Q Consensus 161 ~~~~~~---~~-~~~~~v~vl~~~~~~~-------~~~~~~~~Gt~~al~~~~--~~i~~~~~~~~e~~lil~gD~-l~~ 226 (526)
-.|+.. +. |....+..+...+..- ..-...|.|.++-..... ..+++...+..+.+.+..-|. +..
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 224321 11 1222233332110000 000112567665444332 234444457788999999998 555
Q ss_pred cCHHHHHHHHHHcCCcEEEEEEEccCCcCCCceEEEE--cCCCC--e--eeeeccCCccccccccccccccccchhhhcC
Q 043870 227 MDYMDFVQHHINSGGDISVCCLPVDESRASDFGLMKI--DETGR--I--RQFLEKPKGENLRSMQIDTTALGLSAQEARN 300 (526)
Q Consensus 227 ~dl~~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~--d~~g~--V--~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~ 300 (526)
...-.++-.+...++++...+.+..+ ...-|++.. ..+|+ | ++|.|-+..-. ....+..- .++ ..-.
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~--~~~~~~g~--~~~-~~~~ 230 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLR--ASGKDDGD--VDD-KTGF 230 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHH--hcCCCCCC--ccc-cccc
Confidence 44555666667788888776665333 235676653 23343 3 66666443110 00000000 000 0001
Q ss_pred CCceeeeeEEEEcHHHHHHHHHh
Q 043870 301 FPYIASMGIYLFKTEVLLKVLRW 323 (526)
Q Consensus 301 ~~~l~~~Giyif~~~~l~~ll~~ 323 (526)
+.+..+++.++|+-+.+.+.++.
T Consensus 231 s~f~gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 231 SPFPGNINQLVFSLGPYMDELEK 253 (315)
T ss_pred ccCCCeeeeEEEeHHHHHHHHhh
Confidence 34578999999998888777764
No 244
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.80 E-value=0.0001 Score=67.12 Aligned_cols=75 Identities=20% Similarity=0.078 Sum_probs=39.3
Q ss_pred ceEECCCcEECCCCEEeceEEECCccc-chhHHH-----------HHHhhCCCcceEECCCCEEe-ceEECCCCEECCCc
Q 043870 421 HSIVGIRSRLEYGVELKDTMMMGADYY-QTEAEI-----------AALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNV 487 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i~~~v~~~~~~~-~~~~~~-----------~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~ 487 (526)
.+.||++|.|++++.|... -...+. .+..+. ......-..++.||++|.|. +|+|..+++||+++
T Consensus 21 ~i~IG~~~~I~~~v~i~~~--~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~ 98 (145)
T cd03349 21 KLSIGKFCSIAPGVKIGLG--GNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVWIGHGATILPGVTIGDGA 98 (145)
T ss_pred CeEECCCCEECCCCEECCC--CCCCCCCccccceEeeccccccccccccccccCCcEECCCCEECCCCEEeCCCEECCCC
Confidence 6788888888888888655 111110 000000 00000112346777777776 46666666666666
Q ss_pred EEccCCCcCC
Q 043870 488 IIANKDGVEE 497 (526)
Q Consensus 488 ~i~~~~~v~~ 497 (526)
+|+....+..
T Consensus 99 vIgags~V~~ 108 (145)
T cd03349 99 VIAAGAVVTK 108 (145)
T ss_pred EECCCCEEcc
Confidence 6666554443
No 245
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=97.80 E-value=3.2e-05 Score=68.34 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=51.6
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceE------------EECCcccchhHHHHHHhhCCCcceEECCCCEEe
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTM------------MMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK 473 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v------------~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~ 473 (526)
+++-+||.|+ +.+-++-+|.+|.+++++.|+..+ ++|+. +.|+++|.+.
T Consensus 40 tIv~~g~iIR-GDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdh------------------VFieE~cVVn 100 (184)
T KOG3121|consen 40 TIVEEGVIIR-GDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDH------------------VFIEEECVVN 100 (184)
T ss_pred EEEeeCcEEe-cccccceEcceEEeccccccCCchHHhcCCceeeeeeecce------------------EEEecceEee
Confidence 7788888885 345567777777777777776543 45543 6667777666
Q ss_pred ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccC
Q 043870 474 NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSG 510 (526)
Q Consensus 474 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g 510 (526)
.+.||.-+++|+|++|++.-.+.+-+++.+++.+...
T Consensus 101 AAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpe 137 (184)
T KOG3121|consen 101 AAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPE 137 (184)
T ss_pred hhhheeeeEeccceeEcCceEhhhheeccCCcccCcc
Confidence 4555555555555555544333344455555555443
No 246
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.00081 Score=71.18 Aligned_cols=183 Identities=19% Similarity=0.271 Sum_probs=111.0
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeC-CcchhHHHHHHHHHhc----CC-cEEEEEeccChhHHHHHhh-hccc
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIG-GCYRLIDVPMSNCINS----GI-KKIYILTQFNSQSLNRHIS-RTYN 162 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~-g~~pLI~~~l~~l~~~----gi-~~I~Iv~~~~~~~l~~~l~-~~~~ 162 (526)
..++.+|+||||.||||+ ..-||.+++|. |+ ++++.+.+++..+ ++ -..+|.+..+.++...++. ..|
T Consensus 103 ~~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y- 177 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDY- 177 (472)
T ss_pred cCceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhh-
Confidence 456889999999999999 67799999999 77 9999998887653 33 2567777787755455443 344
Q ss_pred CCC-C--ccc-CCCeEE-EEecccccCc--CC--Ccc-ccChHHHHHHHHH--HhhhhccCCCCeEEEEcCCeecccCHH
Q 043870 163 LGD-G--MNF-GDGFVE-VLAATQRQGE--SG--KKW-FQGTADAVRQFIW--MFEDAKHRNIENILILSGDHLYRMDYM 230 (526)
Q Consensus 163 ~~~-~--~~~-~~~~v~-vl~~~~~~~~--~~--~~~-~~Gt~~al~~~~~--~i~~~~~~~~e~~lil~gD~l~~~dl~ 230 (526)
++. . +.| ...... ++.....+-. ++ ..| |.|+++-...... .+++...++.+.+.|.+.|.+...-=.
T Consensus 178 ~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 178 FGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred cCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 221 1 111 111111 2111111000 11 234 4566543332222 445444578899999999995433223
Q ss_pred HHHHHHHHcCCcEEEEEEEccCCcCCCceEEE-EcCCCCeeeeeccCCc
Q 043870 231 DFVQHHINSGGDISVCCLPVDESRASDFGLMK-IDETGRIRQFLEKPKG 278 (526)
Q Consensus 231 ~ll~~h~~~~ad~ti~~~~~~~~~~~~~g~v~-~d~~g~V~~~~eKp~~ 278 (526)
.++.++...+.+.++=....... ..+-|++. .|..-||+.+.+-|..
T Consensus 258 ~~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~ 305 (472)
T COG4284 258 KFLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNE 305 (472)
T ss_pred HHHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChh
Confidence 56777788888877755443221 23456655 6777889999887764
No 247
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.68 E-value=8.3e-05 Score=70.76 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=36.2
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEEC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~Ig 484 (526)
+.||.|-.+..+ ...+||+-+.||.++.|-..+.+|...-+.+. .-| .||+|+.|.- +.|-.|+.||
T Consensus 155 a~ig~gilldha--tgvvigeTAvvg~~vSilH~Vtlggtgk~~gd---------rhP-~Igd~vliGaGvtILgnV~IG 222 (269)
T KOG4750|consen 155 AKIGKGILLDHA--TGVVIGETAVVGDNVSILHPVTLGGTGKGSGD---------RHP-KIGDNVLIGAGVTILGNVTIG 222 (269)
T ss_pred hhcccceeeccc--cceeecceeEeccceeeecceeeccccccccc---------cCC-cccCCeEEccccEEeCCeeEC
Confidence 345555555321 24566666666666666666666653222111 123 5555555542 3344444444
Q ss_pred CCcEEccC
Q 043870 485 KNVIIANK 492 (526)
Q Consensus 485 ~~~~i~~~ 492 (526)
+|++|+.+
T Consensus 223 egavIaAG 230 (269)
T KOG4750|consen 223 EGAVIAAG 230 (269)
T ss_pred CCcEEecc
Confidence 44444443
No 248
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.61 E-value=0.00027 Score=66.93 Aligned_cols=102 Identities=23% Similarity=0.275 Sum_probs=64.8
Q ss_pred eeEECCCCEEcc-eee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHh-hCCCcceEECCCCEEe-ceEEC
Q 043870 405 DSIISHGCFLRE-CSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALL-AEGKVPVGIGRDTKIK-NCIID 478 (526)
Q Consensus 405 ~s~Ig~~~~i~~-~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~Ig~~~~i~-~~iI~ 478 (526)
...+|.+|+++. +.+ .+..||.++.++++|.|......... .+ .... .++..|+.||+++.|. +++|.
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~-~~-----~~~~~~~~~~~v~IG~~vwIG~~a~Il 140 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDF-VT-----ANIGALVGAGPVTIGEDVWIGAGAVIL 140 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCCh-hh-----cccCCceecCCeEECCCeEEcCccEEC
Confidence 356777777763 332 55678888888888888764222210 00 0111 3446789999999998 68999
Q ss_pred CCCEECCCcEEccCCCcCCccccCCCeEEccCcEE
Q 043870 479 KNAKIGKNVIIANKDGVEEAERPSDGFYIRSGITV 513 (526)
Q Consensus 479 ~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~~ 513 (526)
++++||++++|+..+.+.. +++...+..|..+.+
T Consensus 141 pGV~IG~gavigagsVVtk-dvp~~~iv~G~Pa~v 174 (190)
T COG0110 141 PGVTIGEGAVIGAGSVVTK-DVPPYGIVAGNPARV 174 (190)
T ss_pred CCEEECCCcEEeeCCEEeC-ccCCCeEEeCCcceE
Confidence 9999999999988876665 344444444444433
No 249
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.0087 Score=62.06 Aligned_cols=350 Identities=17% Similarity=0.190 Sum_probs=175.9
Q ss_pred CceEEEEEcCCCCccccCccCCCCccceeeCCcchhHHHHHHHHHhc----CCc-EEEEEeccChh-HHHHHhhhcccCC
Q 043870 91 KAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDVPMSNCINS----GIK-KIYILTQFNSQ-SLNRHISRTYNLG 164 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~pLI~~~l~~l~~~----gi~-~I~Iv~~~~~~-~l~~~l~~~~~~~ 164 (526)
.+...+=|-||.||-|+ ...||.+++|.+.+.++|-++.+.... +++ -.++...++-+ +....+.+.+...
T Consensus 102 ~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~~~k 178 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYAGSK 178 (498)
T ss_pred hheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhcCCc
Confidence 34567779999999999 677999999987668888777766543 333 34555555544 4445554332111
Q ss_pred ------CCcccCCCeEE-EEeccc-ccCcCCCccc-cChHHHHHHH--HHHhhhhccCCCCeEEEEcCCeeccc-CHHHH
Q 043870 165 ------DGMNFGDGFVE-VLAATQ-RQGESGKKWF-QGTADAVRQF--IWMFEDAKHRNIENILILSGDHLYRM-DYMDF 232 (526)
Q Consensus 165 ------~~~~~~~~~v~-vl~~~~-~~~~~~~~~~-~Gt~~al~~~--~~~i~~~~~~~~e~~lil~gD~l~~~-dl~~l 232 (526)
+..+|..-..+ .++... .....-+.|+ -|.++-.... .-.++....+..|.++|.+.|.+-.. |+ .+
T Consensus 179 v~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL-~I 257 (498)
T KOG2638|consen 179 VDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDL-NI 257 (498)
T ss_pred eeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeH-HH
Confidence 11122211111 122111 1111234675 3443322211 12333333467799999999997644 43 34
Q ss_pred HHHHHHcCCcEEEEEEEccCCcCCCceEEEEcCCCC--eeeeeccCCccccccccccccccccchhhhcCCCceeeeeEE
Q 043870 233 VQHHINSGGDISVCCLPVDESRASDFGLMKIDETGR--IRQFLEKPKGENLRSMQIDTTALGLSAQEARNFPYIASMGIY 310 (526)
Q Consensus 233 l~~h~~~~ad~ti~~~~~~~~~~~~~g~v~~d~~g~--V~~~~eKp~~~~~~~~~~~~~~l~~s~~~~~~~~~l~~~Giy 310 (526)
++...+.+....|=+++... +---|-..++-+|+ +.++..-|.....+ + .|. +.-.+.+|.-.
T Consensus 258 Ln~~i~~~~ey~MEvTdKT~--aDvKgGtLi~y~G~lrlLEiaQVP~ehv~e-F--------kS~----kkFkifNTNNl 322 (498)
T KOG2638|consen 258 LNHVINNNIEYLMEVTDKTR--ADVKGGTLIQYEGKLRLLEIAQVPKEHVDE-F--------KSI----KKFKIFNTNNL 322 (498)
T ss_pred HHHHhcCCCceEEEecccch--hhcccceEEeecCEEEEEEeccCChhHhhh-h--------ccc----eeEEEeccCCe
Confidence 55555667776666654432 21122222223343 44444444431100 0 000 01134555555
Q ss_pred EEcHHHHHHHHHhhCCCCCChhhchHh-------------------hhhc--CCcEEEEEecceeeecCChhhHHHhchh
Q 043870 311 LFKTEVLLKVLRWHYPEANDFGSEVIP-------------------MATK--DFNVQAYLFNDYWEDIGTIKSFFDANLS 369 (526)
Q Consensus 311 if~~~~l~~ll~~~~~~~~d~~~dil~-------------------~li~--~~~V~~~~~~~~w~dIgt~~d~~~An~~ 369 (526)
++.-..++.+++.. .+..+|++ ++++ ...+.+..-...+..+.|-.|++...-.
T Consensus 323 WinLkavKrlve~~-----~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~ 397 (498)
T KOG2638|consen 323 WINLKAVKKLVEEN-----ALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSN 397 (498)
T ss_pred EEehHHHHHHhhcC-----cccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecc
Confidence 66666676676652 12222322 2222 1122222234567788888887766544
Q ss_pred hcCCCCCcccCCCCCcccCCCC--CCCC-eeec--CeeEeeeEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECC
Q 043870 370 LTDKPPKFHFYDPQKPIFTSPR--FLPP-SKIE--KCRVQDSIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGA 444 (526)
Q Consensus 370 ll~~~~~~~~~~~~~~i~~~~~--~~~~-~~i~--~~~i~~s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~ 444 (526)
+.......--.+|+....+.+. +++. .+++ .+++.+ --.. -.+.|-.|-.++..|.+++++++|++-+
T Consensus 398 Ly~ld~Gsl~l~~~r~~~t~P~vkLg~~F~kv~~f~~rfp~----iP~i---leLdhLtVsGdV~FGknV~LkGtViIia 470 (498)
T KOG2638|consen 398 LYDLDNGSLTLSPSRFGPTPPLVKLGSEFKKVEDFLGRFPG----IPDI---LELDHLTVSGDVWFGKNVSLKGTVIIIA 470 (498)
T ss_pred eeeccCCeEEechhhcCCCCCeeecchhhhHHHHHHhcCCC----CCcc---ceeceEEEeccEEeccceEEeeEEEEEe
Confidence 4332221111122211111111 1111 0010 111110 0000 1124667777889999999999998866
Q ss_pred cccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECC
Q 043870 445 DYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGK 485 (526)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~ 485 (526)
+ ...++.|-+|+.+.||+|..|++|-+
T Consensus 471 ~--------------~~~~i~IP~gsVLEn~~v~gn~~ile 497 (498)
T KOG2638|consen 471 N--------------EGDRIDIPDGSVLENKIVSGNLRILE 497 (498)
T ss_pred c--------------CCCeeecCCCCeeecceEeccccccc
Confidence 3 23347899999999999999998854
No 250
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.54 E-value=0.00038 Score=79.07 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=60.9
Q ss_pred eeEECCCCEEcceee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCC
Q 043870 405 DSIISHGCFLRECSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKN 480 (526)
Q Consensus 405 ~s~Ig~~~~i~~~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~ 480 (526)
++.||+||.|+...+ ....||++|.|+++|.|.+....+. .... .|+.||+||.|. +|+|.++
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~-~l~~------------g~i~IG~~~~IG~~s~I~~g 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERG-RLHT------------GPVTLGRDAFIGTRSTLDID 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCC-ceee------------cCcEECCCcEECCCCEEcCC
Confidence 456777777765332 3466888888888888765433221 1111 237888888887 5888888
Q ss_pred CEECCCcEEccCCCcCCccccCCC-eEEccCcEEECC
Q 043870 481 AKIGKNVIIANKDGVEEAERPSDG-FYIRSGITVVLK 516 (526)
Q Consensus 481 ~~Ig~~~~i~~~~~v~~~~~~~~~-~~I~~g~~~i~~ 516 (526)
++||++++|+....+.....+.++ .+.++-...+++
T Consensus 179 ~~Igd~a~vgagS~V~~g~~v~~~~~~~G~PA~~~~~ 215 (695)
T TIGR02353 179 TSIGDGAQLGHGSALQGGQSIPDGERWHGSPAQKTGA 215 (695)
T ss_pred CEECCCCEECCCCEecCCcccCCCCEEEeeCCEEecc
Confidence 888888888877666553333333 333433344333
No 251
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.47 E-value=0.00036 Score=79.24 Aligned_cols=76 Identities=14% Similarity=0.280 Sum_probs=45.6
Q ss_pred eeEECCCCEEcceee---eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCC
Q 043870 405 DSIISHGCFLRECSV---EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKN 480 (526)
Q Consensus 405 ~s~Ig~~~~i~~~~v---~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~ 480 (526)
++.||++|.|+...+ ..+.||++|.|+++|.|.....-+.. .. ..++.||++|.|. +|+|.++
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~-~~------------~~~v~IG~~~~IG~~a~V~~g 663 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRV-MK------------SDTVTIGDGATLGPGAIVLYG 663 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEeccccccc-cc------------cCCeEECCCCEECCCCEECCC
Confidence 466777777765332 23688888888888888653221111 00 0126677776666 3666666
Q ss_pred CEECCCcEEccCC
Q 043870 481 AKIGKNVIIANKD 493 (526)
Q Consensus 481 ~~Ig~~~~i~~~~ 493 (526)
++||++++|+...
T Consensus 664 ~~IGd~a~Ig~~S 676 (695)
T TIGR02353 664 VVMGEGSVLGPDS 676 (695)
T ss_pred CEECCCCEECCCC
Confidence 6666666666543
No 252
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.31 E-value=0.00033 Score=70.50 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=46.4
Q ss_pred eceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEeceEECCCCEECCCcEEccCCCcCCcc
Q 043870 420 EHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKNCIIDKNAKIGKNVIIANKDGVEEAE 499 (526)
Q Consensus 420 ~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~ 499 (526)
++|.||+++.||.+|+|.++|.+-+...= .+ ..++.++.|..++++.+++||.|++|.+.+.++++.
T Consensus 275 ~~C~Ig~~vvIG~r~~i~~gV~l~~s~il----------~~---~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV 341 (371)
T KOG1322|consen 275 ENCSIGPNVVIGPRVRIEDGVRLQDSTIL----------GA---DYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNV 341 (371)
T ss_pred CccEECCCceECCCcEecCceEEEeeEEE----------cc---ceechhHHHHhhhccccccccCceEEecccEeccce
Confidence 46777777777777777777777763111 11 234555556677777777777777777665444444
Q ss_pred ccCCCeEEcc
Q 043870 500 RPSDGFYIRS 509 (526)
Q Consensus 500 ~~~~~~~I~~ 509 (526)
.+.+.-++.+
T Consensus 342 ~V~d~~~vn~ 351 (371)
T KOG1322|consen 342 IVADEDYVNE 351 (371)
T ss_pred EEeccccccc
Confidence 4444444433
No 253
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.25 E-value=0.00081 Score=63.63 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=8.8
Q ss_pred ceEECCCcEECCCCEE
Q 043870 421 HSIVGIRSRLEYGVEL 436 (526)
Q Consensus 421 ~s~ig~~~~I~~~~~i 436 (526)
+..+|.++.++.++.+
T Consensus 67 ~~~iG~~~~i~~~~~~ 82 (190)
T COG0110 67 NLTIGDLCFIGVNVVI 82 (190)
T ss_pred ceEECCeeEEcCCcEE
Confidence 4455555555555554
No 254
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.22 E-value=0.003 Score=57.53 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=13.1
Q ss_pred eEECCCCEEe-ceEECCCCEECCCcEEc
Q 043870 464 VGIGRDTKIK-NCIIDKNAKIGKNVIIA 490 (526)
Q Consensus 464 ~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~ 490 (526)
+.||.++.|. ++.|+++|.||+++++.
T Consensus 80 ~~Ig~~~~i~~gv~Ig~~~vIgags~V~ 107 (145)
T cd03349 80 VWIGHGATILPGVTIGDGAVIAAGAVVT 107 (145)
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEEc
Confidence 4445555543 34555555555555444
No 255
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.04 E-value=0.0013 Score=58.77 Aligned_cols=111 Identities=14% Similarity=0.289 Sum_probs=59.3
Q ss_pred CCCCCCCeee-cCeeEe-eeEECCCCEEcceee-----eceEECCCcEECCCCEEec-------------eEEECCcc-c
Q 043870 389 SPRFLPPSKI-EKCRVQ-DSIISHGCFLRECSV-----EHSIVGIRSRLEYGVELKD-------------TMMMGADY-Y 447 (526)
Q Consensus 389 ~~~~~~~~~i-~~~~i~-~s~Ig~~~~i~~~~v-----~~s~ig~~~~I~~~~~i~~-------------~v~~~~~~-~ 447 (526)
+..+.|.+.+ ..+.|. |..|++||++.+..+ ---+||+++.|++.+.|.+ -+++|... .
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvF 87 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVF 87 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceE
Confidence 3455555555 333343 588899999986332 3467888888888777765 23333211 1
Q ss_pred chhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEECCCcEEccCCCcCCccccCCCeEE
Q 043870 448 QTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYI 507 (526)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I 507 (526)
|-++...+ ..+|++..|. .|.+|++|.+..+|+++.+..+-.+-++.+++.+
T Consensus 88 eVgc~s~A--------~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~v 140 (190)
T KOG4042|consen 88 EVGCKSSA--------KKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSV 140 (190)
T ss_pred Eeechhhh--------hhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcceE
Confidence 11110000 2345555555 3666666666666666555555555555444444
No 256
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.99 E-value=0.0017 Score=58.03 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=52.6
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-eEECC-----
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDK----- 479 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~----- 479 (526)
..|.+++++- ..|.|-..+.|++||.++....+-++ +.|+.||+|+.|.. ++|-+
T Consensus 9 vkIap~AvVC----vEs~irGdvti~~gcVvHP~a~~iA~---------------aGPI~iGEnniiEEyA~i~n~~~~~ 69 (190)
T KOG4042|consen 9 VKIAPSAVVC----VESDIRGDVTIKEGCVVHPFAVFIAT---------------AGPIYIGENNIIEEYAVIRNRLEPG 69 (190)
T ss_pred eeecCceEEE----EecccccceEecCCcEecceEEEEcc---------------cCCEEEccCchhhhHHHHHhhcCCC
Confidence 3455555553 23445555666666666666555542 45677887777652 22221
Q ss_pred --------CCEECCCcEEcc-----CCCcCCccccCCCeEEccCcEEECCCCEECCCcc
Q 043870 480 --------NAKIGKNVIIAN-----KDGVEEAERPSDGFYIRSGITVVLKNTTIKDGTI 525 (526)
Q Consensus 480 --------~~~Ig~~~~i~~-----~~~v~~~~~~~~~~~I~~g~~~i~~~~~i~~gt~ 525 (526)
--.||.|-+..- ...++....++..+|++.|+.+ -+++.||+++.
T Consensus 70 ~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~NVieskayvg~gv~v-ssgC~vGA~c~ 127 (190)
T KOG4042|consen 70 AVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDRNVIESKAYVGDGVSV-SSGCSVGAKCT 127 (190)
T ss_pred CccCCCCCeEEEeccceEEeechhhhhhhcCcceEeeeeEecCCcEE-cCCceeccceE
Confidence 123444444321 1234445555556666666554 66666666654
No 257
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=96.85 E-value=0.0028 Score=56.34 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=24.5
Q ss_pred ceEECCCCEECCCcEEccCCCcCCccccCCCeEEccCcE-----EECCCCEECCCcc
Q 043870 474 NCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYIRSGIT-----VVLKNTTIKDGTI 525 (526)
Q Consensus 474 ~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I~~g~~-----~i~~~~~i~~gt~ 525 (526)
+.+||+++.|+++|++. .+.+.....+|.++.||.+.+ +|.+++++++.|+
T Consensus 84 p~hiGdhVFieE~cVVn-AAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~ 139 (184)
T KOG3121|consen 84 PVHIGDHVFIEEECVVN-AAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETL 139 (184)
T ss_pred eeeecceEEEecceEee-hhhheeeeEeccceeEcCceEhhhheeccCCcccCcccc
Confidence 45667777777766653 223333333333333332222 3355555555443
No 258
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0019 Score=61.63 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=12.3
Q ss_pred ccCCCeEEccCcE-----EECCCCEECCCcc
Q 043870 500 RPSDGFYIRSGIT-----VVLKNTTIKDGTI 525 (526)
Q Consensus 500 ~~~~~~~I~~g~~-----~i~~~~~i~~gt~ 525 (526)
.+++|++|+.|++ .||+|++|++|++
T Consensus 202 ~Igd~vliGaGvtILgnV~IGegavIaAGsv 232 (269)
T KOG4750|consen 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSV 232 (269)
T ss_pred cccCCeEEccccEEeCCeeECCCcEEeccce
Confidence 4455555554443 3344444444443
No 259
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.74 E-value=0.006 Score=58.59 Aligned_cols=78 Identities=22% Similarity=0.229 Sum_probs=36.1
Q ss_pred eEECCCCEEcceeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEe-ceEECCCCEEC
Q 043870 406 SIISHGCFLRECSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIK-NCIIDKNAKIG 484 (526)
Q Consensus 406 s~Ig~~~~i~~~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~-~~iI~~~~~Ig 484 (526)
.+||.++.+. -.++|+...+|+++.|.+.+.-++ +.|+..|++. |.++.+++.||
T Consensus 23 ViIG~nS~l~-----~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayiG 78 (277)
T COG4801 23 VIIGKNSMLK-----YGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYIG 78 (277)
T ss_pred EEEcccceee-----eeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEEe
Confidence 5566655554 234444444444444444444332 4555555554 34445555555
Q ss_pred CCcEEccCCCcCCccccCCCeEE
Q 043870 485 KNVIIANKDGVEEAERPSDGFYI 507 (526)
Q Consensus 485 ~~~~i~~~~~v~~~~~~~~~~~I 507 (526)
.++.|...-.+...-.++..+.|
T Consensus 79 E~~sI~gkl~v~gdLdig~dV~I 101 (277)
T COG4801 79 EFSSIKGKLTVIGDLDIGADVII 101 (277)
T ss_pred ccceeeeeEEEecccccccceEE
Confidence 55554444333333333333333
No 260
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.71 E-value=0.0042 Score=59.66 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=50.4
Q ss_pred eEECCCCEEcc-eeeeceEECCCcEECCCCEEeceEEECCcccchhHHHHHHhhCCCcceEECCCCEEec-eEECCCCEE
Q 043870 406 SIISHGCFLRE-CSVEHSIVGIRSRLEYGVELKDTMMMGADYYQTEAEIAALLAEGKVPVGIGRDTKIKN-CIIDKNAKI 483 (526)
Q Consensus 406 s~Ig~~~~i~~-~~v~~s~ig~~~~I~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~-~iI~~~~~I 483 (526)
.++++...+++ .+|...+++.+++|+.+|.+...++.+++ +.||+.+.|.. .++..+-.|
T Consensus 34 ~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~gdLdi 95 (277)
T COG4801 34 GVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVIGDLDI 95 (277)
T ss_pred eeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEeccccc
Confidence 34444444443 44456778888888888888888888877 78888888875 677778888
Q ss_pred CCCcEEccC
Q 043870 484 GKNVIIANK 492 (526)
Q Consensus 484 g~~~~i~~~ 492 (526)
|++|.|.++
T Consensus 96 g~dV~Iegg 104 (277)
T COG4801 96 GADVIIEGG 104 (277)
T ss_pred ccceEEecC
Confidence 888888765
No 261
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=95.79 E-value=0.009 Score=40.44 Aligned_cols=9 Identities=11% Similarity=0.412 Sum_probs=3.6
Q ss_pred EECCCCEEc
Q 043870 407 IISHGCFLR 415 (526)
Q Consensus 407 ~Ig~~~~i~ 415 (526)
.|+++|+|+
T Consensus 3 ~Ig~~~~i~ 11 (36)
T PF00132_consen 3 VIGDNVIIG 11 (36)
T ss_dssp EEETTEEEE
T ss_pred EEcCCCEEC
Confidence 334444443
No 262
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=95.16 E-value=0.37 Score=41.72 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=67.0
Q ss_pred ceeeCCcchhHHHHHHHHHhcC--CcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccCh
Q 043870 117 AVPIGGCYRLIDVPMSNCINSG--IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGT 194 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt 194 (526)
++|..|+.+++.++++.+.+.+ ..+++|+.+...+...+.+.+.... ... +....... ..|.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~---------~~g~ 65 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPR-VIRVINEE---------NQGL 65 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCC-eEEEEecC---------CCCh
Confidence 3566666689999999999987 7899999998777767766544311 001 22222111 2578
Q ss_pred HHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCH-HHHHHHHH
Q 043870 195 ADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDY-MDFVQHHI 237 (526)
Q Consensus 195 ~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl-~~ll~~h~ 237 (526)
+.++..+...... +.++++.+|..+..+. ..++..+.
T Consensus 66 ~~~~~~~~~~~~~------d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 66 AAARNAGLKAARG------EYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHHHhcC------CEEEEECCCCccCccHHHHHHHHHh
Confidence 8888888777643 8899999999988884 44434433
No 263
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=94.60 E-value=0.17 Score=47.90 Aligned_cols=85 Identities=14% Similarity=0.172 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChHHHHHHHHHH
Q 043870 125 RLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWM 204 (526)
Q Consensus 125 pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~ 204 (526)
|||+|+++.+..+++.+++|+++. +.+.+++. .+ + +.++.. .. .|...+++.+...
T Consensus 31 ~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~-~~--------~---v~~i~~--~~--------~G~~~si~~al~~ 86 (195)
T TIGR03552 31 AMLRDVITALRGAGAGAVLVVSPD--PALLEAAR-NL--------G---APVLRD--PG--------PGLNNALNAALAE 86 (195)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHH-hc--------C---CEEEec--CC--------CCHHHHHHHHHHH
Confidence 899999999999988888888874 33334332 11 1 333332 11 2889999999877
Q ss_pred hhhhccCCCCeEEEEcCCe-eccc-CHHHHHHHHH
Q 043870 205 FEDAKHRNIENILILSGDH-LYRM-DYMDFVQHHI 237 (526)
Q Consensus 205 i~~~~~~~~e~~lil~gD~-l~~~-dl~~ll~~h~ 237 (526)
+.. ..+.++++.||+ +... .+.++++.+.
T Consensus 87 ~~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 87 ARE----PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hhc----cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 642 235799999999 4444 5778887653
No 264
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=94.22 E-value=0.058 Score=36.36 Aligned_cols=6 Identities=33% Similarity=1.248 Sum_probs=1.8
Q ss_pred CCCCEE
Q 043870 409 SHGCFL 414 (526)
Q Consensus 409 g~~~~i 414 (526)
|++|+|
T Consensus 5 G~~~~i 10 (34)
T PF14602_consen 5 GDNCFI 10 (34)
T ss_dssp -TTEEE
T ss_pred CCCEEE
Confidence 333333
No 265
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=93.48 E-value=0.36 Score=51.52 Aligned_cols=128 Identities=23% Similarity=0.251 Sum_probs=70.7
Q ss_pred CCceEEEEEcCCCCccccCccCCCCccceeeCCcc--hhHHHHHHHHHhc----------C--CcEEEEEeccChhHHHH
Q 043870 90 PKAVASIILGGGAGTRLFPLTGRRAKPAVPIGGCY--RLIDVPMSNCINS----------G--IKKIYILTQFNSQSLNR 155 (526)
Q Consensus 90 ~~~~~aIILAaG~GtRl~Plt~~~pK~LlpV~g~~--pLI~~~l~~l~~~----------g--i~~I~Iv~~~~~~~l~~ 155 (526)
..+..++++|||.|||++ ...||.+.|++-.. .++++..+.+... | |.=++.+.....+...+
T Consensus 95 ~~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~ 171 (477)
T KOG2388|consen 95 EGKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLE 171 (477)
T ss_pred cCcceEEEeccCceeeec---cCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHh
Confidence 456789999999999999 77899999998530 4777776664421 1 22333444466667778
Q ss_pred HhhhcccCCCC---ccc-CCCeEEEEecccccCc-------CCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe
Q 043870 156 HISRTYNLGDG---MNF-GDGFVEVLAATQRQGE-------SGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH 223 (526)
Q Consensus 156 ~l~~~~~~~~~---~~~-~~~~v~vl~~~~~~~~-------~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~ 223 (526)
|+...-.|+.. +.| ..+.+. ..+..+- .-..-+.|+++..+.+...+++...++...+-+.+-|.
T Consensus 172 ~f~~~~~FGl~~~qv~~f~Q~~l~---c~~~~gk~~le~k~~~a~ap~gngg~y~ai~~~l~dm~~rgi~~~hiy~Vdn 247 (477)
T KOG2388|consen 172 YFESHKYFGLKPEQVTFFQQGKLP---CLDLDGKFILEQKNSLAAAPDGNGGLYRAIKDQLEDMAARGIFYDHIYCVDN 247 (477)
T ss_pred HHhhcCCCCCChhHeeeeeccccc---ccccCCceeccCccchhcCCCCCcHHHHHHHhhhhHHHhhcccEEEEEEecc
Confidence 88754334432 111 111111 1111100 00012367766666665666543334555555555565
No 266
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=93.37 E-value=1.5 Score=38.90 Aligned_cols=109 Identities=13% Similarity=0.152 Sum_probs=70.7
Q ss_pred ceeeCCcchhHHHHHHHHHhc--CCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccCh
Q 043870 117 AVPIGGCYRLIDVPMSNCINS--GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGT 194 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~--gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt 194 (526)
++|..++...|..+|+.+.+. ...+|+|+-+.......+.+.+... ....+.++...+. .|.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-------~~~~i~~i~~~~n---------~g~ 66 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-------SDPNIRYIRNPEN---------LGF 66 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-------CSTTEEEEEHCCC---------SHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-------ccccccccccccc---------ccc
Confidence 356666656888999988876 4567877776554444444443221 0112666665443 477
Q ss_pred HHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEEEE
Q 043870 195 ADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 195 ~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti~~ 247 (526)
+.++..+...... +.++++..|.++..+ +..+++.+.+.+.++.+..
T Consensus 67 ~~~~n~~~~~a~~------~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 67 SAARNRGIKHAKG------EYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp HHHHHHHHHH--S------SEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cccccccccccce------eEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 8888888777764 799999999988888 7888888888677655443
No 267
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=88.94 E-value=1.7 Score=46.49 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=48.1
Q ss_pred hcCCcEEEEEec-ceeeecCChhhHHHhchhhcCCCCCcccCCCCCcccCCCCCCCCeee-cCeeEeeeEECCCCEEcc-
Q 043870 340 TKDFNVQAYLFN-DYWEDIGTIKSFFDANLSLTDKPPKFHFYDPQKPIFTSPRFLPPSKI-EKCRVQDSIISHGCFLRE- 416 (526)
Q Consensus 340 i~~~~V~~~~~~-~~w~dIgt~~d~~~An~~ll~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~i~~s~Ig~~~~i~~- 416 (526)
+++..+.+.... +.++-+||..+|++--..- .. +. +. ...+...... .+..+ .++.|.+|++..++.+++
T Consensus 224 Lr~~~l~vv~l~~~~F~H~GTs~E~L~~lt~~-~~---l~-~~-~~~~~~~~~~-~~~~~~~~~~VinSil~~~~~vg~~ 296 (414)
T PF07959_consen 224 LRGTPLNVVPLPNGKFYHFGTSREYLEHLTSD-SE---LG-IM-RRKFSHSPAT-TPSDSEASSCVINSILEGGVSVGPG 296 (414)
T ss_pred hhhccccccccCCceEEEecCCHHHHHhhccC-cc---cc-cc-eeeeeccccc-cccccCCCeeEEEeEecCCceECCC
Confidence 445566665554 6788889888766543222 10 00 00 0001111111 11112 344555666666666664
Q ss_pred eeeeceEECCCcEECCCCEEeceEEE
Q 043870 417 CSVEHSIVGIRSRLEYGVELKDTMMM 442 (526)
Q Consensus 417 ~~v~~s~ig~~~~I~~~~~i~~~v~~ 442 (526)
+.|++|.|+.++.||++|.|.+.-+.
T Consensus 297 svIe~s~l~~~~~IG~~cIisGv~~~ 322 (414)
T PF07959_consen 297 SVIEHSHLGGPWSIGSNCIISGVDIN 322 (414)
T ss_pred CEEEeeecCCCCEECCCCEEECCccc
Confidence 34467777777777777777664433
No 268
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.54 E-value=8.4 Score=34.09 Aligned_cols=99 Identities=7% Similarity=0.084 Sum_probs=65.2
Q ss_pred ceeeCCcchhHHHHHHHHHhcC--CcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccCh
Q 043870 117 AVPIGGCYRLIDVPMSNCINSG--IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGT 194 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt 194 (526)
++|.-++..++..+++.+.+.- ..+++|+.........+.+.+.+. .+.++..... .|.
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~----------~~~~~~~~~~---------~g~ 62 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFP----------EVRLIRNGEN---------LGF 62 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCC----------CeEEEecCCC---------cCh
Confidence 3566666578899999998763 567888777655555555543321 1444432222 578
Q ss_pred HHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcC
Q 043870 195 ADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSG 240 (526)
Q Consensus 195 ~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ 240 (526)
+.++..++...+ .+.++++..|.++..+ +..+++.+.+..
T Consensus 63 ~~a~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 63 GAGNNQGIREAK------GDYVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred HHHhhHHHhhCC------CCEEEEECCCcEECccHHHHHHHHHHhCC
Confidence 888888877664 3889999999988777 666666555443
No 269
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=85.26 E-value=12 Score=32.79 Aligned_cols=100 Identities=13% Similarity=0.110 Sum_probs=61.1
Q ss_pred eeeCCcchhHHHHHHHHHhcC--CcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChH
Q 043870 118 VPIGGCYRLIDVPMSNCINSG--IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTA 195 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~ 195 (526)
+|.-++...|..+|+.+.+.. ..+++|+-+.......+.+.+.... . . ..+.++..... .|.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~-~----~-~~~~~~~~~~~---------~g~~ 67 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAAL-Y----I-RRVLVVRDKEN---------GGKA 67 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhcc-c----c-ceEEEEEeccc---------CCch
Confidence 566666468888899988764 4578777665554444444432100 0 0 11333332222 5777
Q ss_pred HHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHH
Q 043870 196 DAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHIN 238 (526)
Q Consensus 196 ~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~ 238 (526)
.++..++.... .+.++++.+|.+...+ +..++..+.+
T Consensus 68 ~~~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~ 105 (180)
T cd06423 68 GALNAGLRHAK------GDIVVVLDADTILEPDALKRLVVPFFA 105 (180)
T ss_pred HHHHHHHHhcC------CCEEEEECCCCCcChHHHHHHHHHhcc
Confidence 88887776664 3889999999988887 5566455544
No 270
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=84.31 E-value=12 Score=34.06 Aligned_cols=107 Identities=11% Similarity=0.089 Sum_probs=64.6
Q ss_pred eeeCCcchhHHHHHHHHHhc----CCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccC
Q 043870 118 VPIGGCYRLIDVPMSNCINS----GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQG 193 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~----gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~G 193 (526)
+|..+....|..+|+.+.+. ...+|+|+-+...+...+.+.+.. . ++. .+.++..... .|
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~-~----~~~--~~~~~~~~~n---------~G 66 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELA-A----RVP--RVRVIRLSRN---------FG 66 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHH-H----hCC--CeEEEEccCC---------CC
Confidence 44555535667777777766 367788887655444444443211 0 111 1334443333 57
Q ss_pred hHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEEE
Q 043870 194 TADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISVC 246 (526)
Q Consensus 194 t~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti~ 246 (526)
-+.++..+...... +.++++.+|.....+ +..++......+.++.+.
T Consensus 67 ~~~a~n~g~~~a~g------d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 114 (185)
T cd04179 67 KGAAVRAGFKAARG------DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIG 114 (185)
T ss_pred ccHHHHHHHHHhcC------CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 77888777766542 889999999977777 677887655666665443
No 271
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=83.87 E-value=16 Score=34.81 Aligned_cols=97 Identities=12% Similarity=0.186 Sum_probs=63.5
Q ss_pred ceeeCCcc-hhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChH
Q 043870 117 AVPIGGCY-RLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTA 195 (526)
Q Consensus 117 LlpV~g~~-pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~ 195 (526)
++|.-+.. ..|..+|+.+.+....+|+||.....+...+.+...... ..+.++... . .|-.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~--------~~~~v~~~~-~---------~g~~ 66 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKY--------GGIFVITVP-H---------PGKR 66 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccC--------CcEEEEecC-C---------CChH
Confidence 35666665 688889999887666788888877666655555322210 113444321 1 4667
Q ss_pred HHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHH
Q 043870 196 DAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHI 237 (526)
Q Consensus 196 ~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~ 237 (526)
.++..++...+ .+.++++.+|..+..+ +..+++.+.
T Consensus 67 ~a~n~g~~~a~------~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 67 RALAEGIRHVT------TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHHhC------CCEEEEECCCceeChhHHHHHHHhcc
Confidence 77777665543 3889999999999888 666776654
No 272
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=82.17 E-value=16 Score=34.45 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=63.5
Q ss_pred eeeCCcchhHHHHHHHHHhc------CCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccc
Q 043870 118 VPIGGCYRLIDVPMSNCINS------GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWF 191 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~------gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~ 191 (526)
+|.-+....|..+++.+.+. ..-+|+||-+...+...+.+.+ +.- .++. .+.++.....
T Consensus 3 ip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~-~~~----~~~~-~i~~i~~~~n--------- 67 (211)
T cd04188 3 IPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARK-LAR----KNPA-LIRVLTLPKN--------- 67 (211)
T ss_pred EcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHH-HHH----hCCC-cEEEEEcccC---------
Confidence 45555435666667776654 2347777755444333333332 100 0011 1344433222
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEEEE
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti~~ 247 (526)
.|-+.++..+...... +.++++.+|..+..+ +..+++...+.+.++++..
T Consensus 68 ~G~~~a~~~g~~~a~g------d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 68 RGKGGAVRAGMLAARG------DYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred CCcHHHHHHHHHHhcC------CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 5888888888776653 889999999988776 7777777556666655543
No 273
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=81.85 E-value=14 Score=35.43 Aligned_cols=106 Identities=11% Similarity=0.160 Sum_probs=64.4
Q ss_pred ceeeCCcchhHHHHHHHHHhcCC----cEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCcccc
Q 043870 117 AVPIGGCYRLIDVPMSNCINSGI----KKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQ 192 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~gi----~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~ 192 (526)
++|..++.+.+..+++.+.+... -+|+|+-+...+...+.+.... .. ...+.++... . .
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~---~~----~~~v~~i~~~-~---------~ 67 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA---AK----DPRIRLIDNP-K---------R 67 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH---hc----CCeEEEEeCC-C---------C
Confidence 34555654678888888887644 3788887665555455544221 00 1114444321 1 3
Q ss_pred ChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEE
Q 043870 193 GTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISV 245 (526)
Q Consensus 193 Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti 245 (526)
|-+.++..+++... .+.++++.+|.....+ +.++++.+.+.+.++..
T Consensus 68 ~~~~a~N~g~~~a~------~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 115 (249)
T cd02525 68 IQSAGLNIGIRNSR------GDIIIRVDAHAVYPKDYILELVEALKRTGADNVG 115 (249)
T ss_pred CchHHHHHHHHHhC------CCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEe
Confidence 45566777766554 3889999999988777 67788766655555443
No 274
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=80.98 E-value=27 Score=33.70 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=60.0
Q ss_pred cceeeCCcchhHHHHHHHHHhcCC----cEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccc
Q 043870 116 PAVPIGGCYRLIDVPMSNCINSGI----KKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWF 191 (526)
Q Consensus 116 ~LlpV~g~~pLI~~~l~~l~~~gi----~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~ 191 (526)
-++|..|....|..+|+.+.+... -+++|+.....+...+.+. .+. . ..+.++.....
T Consensus 33 Vvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~--~------~~v~~i~~~~~--------- 94 (251)
T cd06439 33 IIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAR-EYA--D------KGVKLLRFPER--------- 94 (251)
T ss_pred EEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHH-HHh--h------CcEEEEEcCCC---------
Confidence 445555554567777777765432 2677777655544444443 221 0 01444443222
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHH
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHIN 238 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~ 238 (526)
.|-+.++..+...... +.++++.+|.+...+ +.++++...+
T Consensus 95 ~g~~~a~n~gi~~a~~------d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 95 RGKAAALNRALALATG------EIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred CChHHHHHHHHHHcCC------CEEEEEccccCcCHHHHHHHHHHhcC
Confidence 4777888877766543 889999999988877 6777766543
No 275
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=79.26 E-value=29 Score=32.66 Aligned_cols=108 Identities=9% Similarity=0.088 Sum_probs=63.4
Q ss_pred ceeeCCcchhHHHHHHHHHhcC---CcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccC
Q 043870 117 AVPIGGCYRLIDVPMSNCINSG---IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQG 193 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~g---i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~G 193 (526)
++|.-+....|..+++.+.+.- .-+|+||-....+...+.+.+ +.-. ...+.++..... .|
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~-~~~~------~~~i~~~~~~~n---------~G 65 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRE-LAKE------YPRVRLIVRPGK---------RG 65 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHH-HHHh------CCceEEEecCCC---------CC
Confidence 3566665456777888877643 346777755433333333321 1000 011444443222 57
Q ss_pred hHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEEE
Q 043870 194 TADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISVC 246 (526)
Q Consensus 194 t~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti~ 246 (526)
-+.++..++..... +.++++.+|.....+ +..+++...+.+.++...
T Consensus 66 ~~~a~n~g~~~a~g------d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 66 LGSAYIEGFKAARG------DVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred hHHHHHHHHHHcCC------CEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 88888887766543 788899999987776 677777655556665443
No 276
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=78.84 E-value=31 Score=33.37 Aligned_cols=109 Identities=10% Similarity=0.062 Sum_probs=62.9
Q ss_pred ceeeCCcchhHHHHHHHHHhcCC----cEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCcccc
Q 043870 117 AVPIGGCYRLIDVPMSNCINSGI----KKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQ 192 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~gi----~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~ 192 (526)
++|.-+..-.|..+++.+.+.-- -+|+||.....+...+.+. .+... ..+.++...... ..
T Consensus 6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~-~~~~~-------~~~~i~~~~~~~-------~~ 70 (241)
T cd06427 6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAAR-ALRLP-------SIFRVVVVPPSQ-------PR 70 (241)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHH-HhccC-------CCeeEEEecCCC-------CC
Confidence 35555554577788888876532 2566665544444344443 22110 012222221111 14
Q ss_pred ChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEEE
Q 043870 193 GTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISVC 246 (526)
Q Consensus 193 Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti~ 246 (526)
|-+.++..++.... .+.++++.+|.....+ +.+++..+.+.+.++.++
T Consensus 71 G~~~a~n~g~~~a~------gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 71 TKPKACNYALAFAR------GEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred chHHHHHHHHHhcC------CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 77888888876554 3889999999988888 678887776544555443
No 277
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=78.40 E-value=50 Score=30.29 Aligned_cols=107 Identities=9% Similarity=0.126 Sum_probs=62.5
Q ss_pred ceeeCCcchhHHHHHHHHHhcCC----cEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCcccc
Q 043870 117 AVPIGGCYRLIDVPMSNCINSGI----KKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQ 192 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~gi----~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~ 192 (526)
++|..+....|..+|+.+.+... .+|+||.....+...+.+. .+ +.. +.+... .. ..
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~-~~--------~~~-~~~~~~-~~--------~~ 62 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVAR-AA--------GAT-VLERHD-PE--------RR 62 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHH-Hc--------CCe-EEEeCC-CC--------CC
Confidence 46777765688888888876532 4677776655444444443 22 111 211111 11 14
Q ss_pred ChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEE
Q 043870 193 GTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDIS 244 (526)
Q Consensus 193 Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~t 244 (526)
|.+.++..+...... .....+-++++.+|....++ +..+++.+. .+.++.
T Consensus 63 gk~~aln~g~~~a~~-~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~-~~~~~v 113 (183)
T cd06438 63 GKGYALDFGFRHLLN-LADDPDAVVVFDADNLVDPNALEELNARFA-AGARVV 113 (183)
T ss_pred CHHHHHHHHHHHHHh-cCCCCCEEEEEcCCCCCChhHHHHHHHHHh-hCCCee
Confidence 778888877766531 00234789999999999888 566666654 345543
No 278
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=77.82 E-value=28 Score=34.97 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=63.3
Q ss_pred eeeCCcc-hhHHHHHHHHHhcCC----cEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCcccc
Q 043870 118 VPIGGCY-RLIDVPMSNCINSGI----KKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQ 192 (526)
Q Consensus 118 lpV~g~~-pLI~~~l~~l~~~gi----~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~ 192 (526)
+|.-+.. ..|..+|+.+.+.-. .+|+||-+...+...+.+.+.+.... ...+.++..... .
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~-----~~~v~vi~~~~n---------~ 69 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKY-----LPKVKVLRLKKR---------E 69 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhc-----CCcEEEEEcCCC---------C
Confidence 5666664 588888888876431 37888866544433333322110000 012556554333 5
Q ss_pred ChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCC
Q 043870 193 GTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGG 241 (526)
Q Consensus 193 Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~a 241 (526)
|-+.+.-.++.... .+.++++++|.....+ +.++++.......
T Consensus 70 G~~~a~N~g~~~A~------gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 70 GLIRARIAGARAAT------GDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CHHHHHHHHHHHcc------CCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 77777777766554 3889999999988777 7888877665443
No 279
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=75.09 E-value=41 Score=32.62 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=35.8
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEEE
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISVC 246 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti~ 246 (526)
.|-+.++..++.... .+.++++.+|...+.+ +.++++...+.++++++.
T Consensus 79 ~G~~~a~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHAS------GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHcC------CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 477788877766554 3789999999988776 677887766667766543
No 280
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=73.47 E-value=55 Score=30.17 Aligned_cols=99 Identities=9% Similarity=0.138 Sum_probs=58.3
Q ss_pred ceeeCCcc--hhHHHHHHHHHhcC--CcEEEEEeccC-hhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccc
Q 043870 117 AVPIGGCY--RLIDVPMSNCINSG--IKKIYILTQFN-SQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWF 191 (526)
Q Consensus 117 LlpV~g~~--pLI~~~l~~l~~~g--i~~I~Iv~~~~-~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~ 191 (526)
++|+.++. ..|..+|+.+.+.. ..+++||-... .....+.+. .|.- ++ . +.++.....
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~-~~~~----~~--~-i~~i~~~~n--------- 65 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLE-EFKR----KL--P-LKVVPLEKN--------- 65 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHH-HHHh----cC--C-eEEEEcCcc---------
Confidence 45666552 27889999998754 35666665443 223333332 2200 00 1 444443222
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHH
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHIN 238 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~ 238 (526)
.|.+.+...+....+ .+.++++.+|.+...+ +..+++...+
T Consensus 66 ~G~~~a~N~g~~~a~------gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 66 RGLGKALNEGLKHCT------YDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred ccHHHHHHHHHHhcC------CCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 578888877776553 3789999999988877 6666666543
No 281
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=73.15 E-value=59 Score=29.51 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=59.1
Q ss_pred eeeCCcchhHHHHHHHHHhcCCc--EEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChH
Q 043870 118 VPIGGCYRLIDVPMSNCINSGIK--KIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTA 195 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~gi~--~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~ 195 (526)
+|.-++...|+.+|+.+.+.... +|+||-+.......+.+.+ + ....+.+.. ... .|-+
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~-~--------~~~~~~~~~-~~~---------~g~~ 64 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKK-Y--------EDKITYWIS-EPD---------KGIY 64 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHH-h--------HhhcEEEEe-cCC---------cCHH
Confidence 45555546888899998876544 6766654433344444442 2 001122222 111 4778
Q ss_pred HHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHH-cCCcE
Q 043870 196 DAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHIN-SGGDI 243 (526)
Q Consensus 196 ~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~-~~ad~ 243 (526)
.++..++...+ .+.++++..|.++..+ +..++..... .+.++
T Consensus 65 ~a~n~~~~~a~------~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~ 108 (202)
T cd06433 65 DAMNKGIALAT------GDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDV 108 (202)
T ss_pred HHHHHHHHHcC------CCEEEEeCCCcccCchHHHHHHHHHHhCCCccE
Confidence 88888776654 3889999999977666 6777744433 33443
No 282
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=72.59 E-value=53 Score=31.36 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=61.9
Q ss_pred eEEEEEc---CCCCccccCccC-CCCccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcc
Q 043870 93 VASIILG---GGAGTRLFPLTG-RRAKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMN 168 (526)
Q Consensus 93 ~~aIILA---aG~GtRl~Plt~-~~pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~ 168 (526)
|.+||+- ++.=|||.|.-+ +.-+.++ +-|+-.++..+... +.+|.|++.... + +...+
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~-----laML~dvi~Al~~~-~~~i~Vvtpde~--~---~~~a~------- 62 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA-----LAMLVDVLGALAGV-LGEITVVTPDEE--V---LVPAT------- 62 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH-----HHHHHHHHHHhhhh-cCCceEEcCChH--h---hhhcc-------
Confidence 4556653 456688876422 1112221 25777888888766 789999987522 1 11111
Q ss_pred cCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCe--ecccCHHHHHHHH
Q 043870 169 FGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDH--LYRMDYMDFVQHH 236 (526)
Q Consensus 169 ~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h 236 (526)
. .+++.+. +.-.++.++++.+.. . +.++|+++|. +...++.+++...
T Consensus 63 ---~-~~vl~d~------------dLN~Ai~aa~~~~~~----p-~~v~vvmaDLPLl~~~~i~~~~~~~ 111 (210)
T COG1920 63 ---K-LEVLADP------------DLNTAINAALDEIPL----P-SEVIVVMADLPLLSPEHIERALSAA 111 (210)
T ss_pred ---c-ceeeecc------------chHHHHHHHHhhCCC----C-cceEEEecccccCCHHHHHHHHHhc
Confidence 1 2444431 234567777766652 2 6799999999 4455688888654
No 283
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=72.50 E-value=47 Score=30.58 Aligned_cols=103 Identities=13% Similarity=0.193 Sum_probs=58.0
Q ss_pred eeeCCcc-hhHHHHHHHHHhcCC--cEEEEEeccChh-HHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccC
Q 043870 118 VPIGGCY-RLIDVPMSNCINSGI--KKIYILTQFNSQ-SLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQG 193 (526)
Q Consensus 118 lpV~g~~-pLI~~~l~~l~~~gi--~~I~Iv~~~~~~-~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~G 193 (526)
+|..++. ..+..+++.+.+.-. -+|+|+-+.... .+...+. .+.. . ...+.++..... .|
T Consensus 7 i~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~-~~~~-~-----~~~~~~~~~~~~---------~g 70 (202)
T cd04184 7 MPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLK-KYAA-Q-----DPRIKVVFREEN---------GG 70 (202)
T ss_pred EecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHH-HHHh-c-----CCCEEEEEcccC---------CC
Confidence 4555654 567777888876533 367776543322 2322222 1100 0 011444433222 46
Q ss_pred hHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHH-HHcCCc
Q 043870 194 TADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHH-INSGGD 242 (526)
Q Consensus 194 t~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h-~~~~ad 242 (526)
-+.++..++..... +.++++..|.....+ +..+++.+ ...+.+
T Consensus 71 ~~~a~n~g~~~a~~------d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~ 115 (202)
T cd04184 71 ISAATNSALELATG------EFVALLDHDDELAPHALYEVVKALNEHPDAD 115 (202)
T ss_pred HHHHHHHHHHhhcC------CEEEEECCCCcCChHHHHHHHHHHHhCCCCC
Confidence 77777777665542 789999999988887 67777776 334443
No 284
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=72.24 E-value=50 Score=30.97 Aligned_cols=105 Identities=8% Similarity=0.046 Sum_probs=60.7
Q ss_pred ceeeCCcchhHHHHHHHHHhcC--C--cEEEEEeccChhHHHHHhh-hcccCCCCcccCCCeEEEEecccccCcCCCccc
Q 043870 117 AVPIGGCYRLIDVPMSNCINSG--I--KKIYILTQFNSQSLNRHIS-RTYNLGDGMNFGDGFVEVLAATQRQGESGKKWF 191 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~g--i--~~I~Iv~~~~~~~l~~~l~-~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~ 191 (526)
++|..++...|..+|+.+...- . -+|+||-+...+...+.+. ... . ....+.++...... .
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~-~------~~~~v~~~~~~~~~-------~ 67 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAA-K------PNFQLKILNNSRVS-------I 67 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHh-C------CCcceEEeeccCcc-------c
Confidence 4677776567888888887652 2 4677776644443344443 110 0 11124444432210 1
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCC
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGG 241 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~a 241 (526)
.|-..++..++.... .+-++++.+|.+...+ +.++++.+.+.+.
T Consensus 68 ~g~~~a~n~g~~~~~------~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 68 SGKKNALTTAIKAAK------GDWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred chhHHHHHHHHHHhc------CCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 466666666655443 3889999999988887 6777776655443
No 285
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=67.88 E-value=53 Score=35.38 Aligned_cols=101 Identities=15% Similarity=0.056 Sum_probs=60.9
Q ss_pred cceeeCCcchhHHHHHHHHHhcC--CcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccC
Q 043870 116 PAVPIGGCYRLIDVPMSNCINSG--IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQG 193 (526)
Q Consensus 116 ~LlpV~g~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~G 193 (526)
-++|..|....|..+++.+.+.. --+|+|+.....+...+.+.+... +. ..+.++..... .|
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~-----~~--~~v~vv~~~~n---------~G 142 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLA-----ED--PRLRVIHLAHN---------QG 142 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHH-----hC--CCEEEEEeCCC---------CC
Confidence 45666666466778888877653 247777765444433333322100 00 11555543222 57
Q ss_pred hHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHH
Q 043870 194 TADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHIN 238 (526)
Q Consensus 194 t~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~ 238 (526)
-+.++..+....+ .|.++++.+|.+.+.| +..+++.+.+
T Consensus 143 ka~AlN~gl~~a~------~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 143 KAIALRMGAAAAR------SEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred HHHHHHHHHHhCC------CCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 7888887765543 3899999999999888 6677766544
No 286
>PRK10073 putative glycosyl transferase; Provisional
Probab=66.81 E-value=67 Score=33.11 Aligned_cols=105 Identities=12% Similarity=0.110 Sum_probs=62.5
Q ss_pred eeeCCcchhHHHHHHHHHhcCC--cEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChH
Q 043870 118 VPIGGCYRLIDVPMSNCINSGI--KKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTA 195 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~gi--~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~ 195 (526)
+|+-+....|..+|+.+.+.-. -+|+||-....+...+.+. .|.- ....+.++.. .. .|.+
T Consensus 12 IP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~-~~~~------~~~~i~vi~~--~n--------~G~~ 74 (328)
T PRK10073 12 IPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAK-HYAE------NYPHVRLLHQ--AN--------AGVS 74 (328)
T ss_pred EeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHH-HHHh------hCCCEEEEEC--CC--------CChH
Confidence 4555554688888999887643 3566664433222222222 2200 0112555542 21 5777
Q ss_pred HHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEE
Q 043870 196 DAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISV 245 (526)
Q Consensus 196 ~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti 245 (526)
.+.-.++..... +.++++.+|.+...+ +..+++...+.+.++.+
T Consensus 75 ~arN~gl~~a~g------~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 75 VARNTGLAVATG------KYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHHHHHHHhCCC------CEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 787777665543 889999999988887 67777766666667644
No 287
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=66.37 E-value=66 Score=29.17 Aligned_cols=105 Identities=10% Similarity=0.019 Sum_probs=58.3
Q ss_pred eeeCCcchhHHHHHHHHHhc-----CCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCcccc
Q 043870 118 VPIGGCYRLIDVPMSNCINS-----GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQ 192 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~-----gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~ 192 (526)
+|.-+....|..+++.+.+. ..-+|+|+-+...+...+.+.. +.- +. ..+.++...+. .
T Consensus 3 Ip~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~-~~~----~~--~~i~~i~~~~n---------~ 66 (181)
T cd04187 3 VPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRE-LAA----RD--PRVKVIRLSRN---------F 66 (181)
T ss_pred EeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHH-HHh----hC--CCEEEEEecCC---------C
Confidence 44444423455555554432 2347777766544433333321 100 00 12455543333 5
Q ss_pred ChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEE
Q 043870 193 GTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISV 245 (526)
Q Consensus 193 Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti 245 (526)
|.+.++..++..... +.++++.+|.....+ +..+++. .+.+.++.+
T Consensus 67 G~~~a~n~g~~~a~~------d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~ 113 (181)
T cd04187 67 GQQAALLAGLDHARG------DAVITMDADLQDPPELIPEMLAK-WEEGYDVVY 113 (181)
T ss_pred CcHHHHHHHHHhcCC------CEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEE
Confidence 788888887765543 889999999988777 6777765 445555443
No 288
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=65.30 E-value=9.5 Score=45.06 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=28.1
Q ss_pred eEECCC-CEEeceEECCCCEECCCcEEccCCCcCCccccCCCeEE
Q 043870 464 VGIGRD-TKIKNCIIDKNAKIGKNVIIANKDGVEEAERPSDGFYI 507 (526)
Q Consensus 464 ~~Ig~~-~~i~~~iI~~~~~Ig~~~~i~~~~~v~~~~~~~~~~~I 507 (526)
+.+|++ +.|.||.|+.+.+||.+++|.+.......-.+.+++.|
T Consensus 343 ~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci 387 (974)
T PRK13412 343 LTAENATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCI 387 (974)
T ss_pred cccCCCeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEE
Confidence 677776 44778888888888888888766433333334444444
No 289
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=64.66 E-value=1e+02 Score=28.50 Aligned_cols=100 Identities=10% Similarity=0.053 Sum_probs=58.0
Q ss_pred eeeCCcchhHHHHHHHHHhcC--CcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChH
Q 043870 118 VPIGGCYRLIDVPMSNCINSG--IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTA 195 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~ 195 (526)
+|.-++...|..+|+.+.+.- ..+|+|+-+...+...+.+.+.. . .+. +.++..... .|.+
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~---~--~~~---i~~~~~~~n---------~g~~ 65 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLG---D--LDN---IVYLRLPEN---------LGGA 65 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhc---C--CCc---eEEEECccc---------cchh
Confidence 444554467888899988753 24777776655445555554321 0 011 344433222 4666
Q ss_pred HHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHH
Q 043870 196 DAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHI 237 (526)
Q Consensus 196 ~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~ 237 (526)
.++..+...... ...+.++++..|.+...+ +..+++...
T Consensus 66 ~~~n~~~~~a~~---~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 66 GGFYEGVRRAYE---LGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred hHHHHHHHHHhc---cCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 666665544321 234789999999988888 556665554
No 290
>PRK11204 N-glycosyltransferase; Provisional
Probab=63.81 E-value=72 Score=33.80 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=57.9
Q ss_pred eeCCcchhHHHHHHHHHhcC--CcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChHH
Q 043870 119 PIGGCYRLIDVPMSNCINSG--IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTAD 196 (526)
Q Consensus 119 pV~g~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~ 196 (526)
|..++...|..+++.+.+.. -.+|+|+-....+...+.+.+.. - ++ ..+.++...+. .|-++
T Consensus 61 p~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~-~----~~--~~v~~i~~~~n---------~Gka~ 124 (420)
T PRK11204 61 PCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLA-A----QI--PRLRVIHLAEN---------QGKAN 124 (420)
T ss_pred ecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHH-H----hC--CcEEEEEcCCC---------CCHHH
Confidence 33343356677777777653 24777776644443333332110 0 00 11455543222 47788
Q ss_pred HHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHH
Q 043870 197 AVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHIN 238 (526)
Q Consensus 197 al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~ 238 (526)
++..+....+ .|.++++.+|.+.+.| +..+++.+.+
T Consensus 125 aln~g~~~a~------~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 125 ALNTGAAAAR------SEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred HHHHHHHHcC------CCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 8888876554 3899999999988888 6777776644
No 291
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=63.09 E-value=1.3e+02 Score=28.26 Aligned_cols=100 Identities=11% Similarity=0.147 Sum_probs=57.5
Q ss_pred ceeeCCcc-hhHHHHHHHHHhcCC-c---EEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccc
Q 043870 117 AVPIGGCY-RLIDVPMSNCINSGI-K---KIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWF 191 (526)
Q Consensus 117 LlpV~g~~-pLI~~~l~~l~~~gi-~---~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~ 191 (526)
.+|..++. .++..+++.+..... . +|+||-+...+...+.+.. +. .. . .+.++......
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~-~~--~~--~---~~~~~~~~~~~-------- 69 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAE-LG--VE--Y---GYRYLTRPDNR-------- 69 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHH-hh--cc--c---CceEEEeCCCC--------
Confidence 34555642 367888888887543 2 6888876655555554442 21 10 0 13333322221
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHH
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHIN 238 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~ 238 (526)
.+.++++..+++... .+.++++..|.+.+.+ +..+++...+
T Consensus 70 ~~~~~~~n~~~~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 70 HAKAGNLNNALAHTT------GDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred CCcHHHHHHHHHhCC------CCEEEEEccccCcCccHHHHHHHHHhc
Confidence 234555666655443 3889999999988888 5666665544
No 292
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=61.99 E-value=1.5e+02 Score=28.35 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=60.7
Q ss_pred hhHHHHHHHHH-hcCCc-EEEEEecc---ChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChHHHHH
Q 043870 125 RLIDVPMSNCI-NSGIK-KIYILTQF---NSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVR 199 (526)
Q Consensus 125 pLI~~~l~~l~-~~gi~-~I~Iv~~~---~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~ 199 (526)
|++-|.+.... +.|.+ +|+||=.. -..+..+.|.+.| +..+|-+...... .|.+.|..
T Consensus 19 pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~y--------g~d~i~l~pR~~k---------lGLgtAy~ 81 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIY--------GEDNILLKPRTKK---------LGLGTAYI 81 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHh--------CCCcEEEEeccCc---------ccchHHHH
Confidence 44455555544 45664 55555322 1224455666555 2333555443332 67888888
Q ss_pred HHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEEEEEE
Q 043870 200 QFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISVCCLP 249 (526)
Q Consensus 200 ~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti~~~~ 249 (526)
.++.+.+. +-++++.+|.=-.+. +.++++..++.+.|++....-
T Consensus 82 hgl~~a~g------~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRY 126 (238)
T KOG2978|consen 82 HGLKHATG------DFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRY 126 (238)
T ss_pred hhhhhccC------CeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeE
Confidence 88776653 667778888755554 788888877777787766543
No 293
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=61.62 E-value=1.3e+02 Score=27.99 Aligned_cols=95 Identities=12% Similarity=0.020 Sum_probs=55.8
Q ss_pred ceeeCCcchhHHHHHHHHHhcC--CcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccCh
Q 043870 117 AVPIGGCYRLIDVPMSNCINSG--IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGT 194 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt 194 (526)
++|+.+..+.|..+|+.+.+.- ..+|+||-+...+...+.+.+ . .+.++.. . .|-
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~-~-----------~~~~~~~--~---------~g~ 60 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS-A-----------GVVVISS--P---------KGR 60 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc-C-----------CeEEEeC--C---------cCH
Confidence 3566666467888888887653 356777765444444444442 1 1333321 1 355
Q ss_pred HHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcC
Q 043870 195 ADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSG 240 (526)
Q Consensus 195 ~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ 240 (526)
+.+...+..... .+.++++..|..+..+ +..++......+
T Consensus 61 ~~a~n~g~~~a~------~~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 61 ARQMNAGAAAAR------GDWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred HHHHHHHHHhcc------CCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 666666655443 3889999999988777 555555444333
No 294
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=61.59 E-value=1.1e+02 Score=28.22 Aligned_cols=100 Identities=11% Similarity=0.055 Sum_probs=51.9
Q ss_pred ceeeCCcchhHHHHHHHHHhcC--CcEEEEEeccChhHHHHHhh---hcccCCCCcccCCCeEEEEecccccCcCCCccc
Q 043870 117 AVPIGGCYRLIDVPMSNCINSG--IKKIYILTQFNSQSLNRHIS---RTYNLGDGMNFGDGFVEVLAATQRQGESGKKWF 191 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~g--i~~I~Iv~~~~~~~l~~~l~---~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~ 191 (526)
++|+.+..+-|...|+.+.+.- --+|+||.....+...+.+. ..+ ....+.++......| .
T Consensus 6 iip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~--------~~~~~~~~~~~~~~g------~ 71 (196)
T cd02520 6 LKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKY--------PNVDARLLIGGEKVG------I 71 (196)
T ss_pred EEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHC--------CCCcEEEEecCCcCC------C
Confidence 3555555456777788877642 34777776644433223222 121 111133443322210 0
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHH
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHH 236 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h 236 (526)
.+.+.++..+..... .+.++++.+|.....+ +..+++..
T Consensus 72 ~~~~~~~n~g~~~a~------~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 72 NPKVNNLIKGYEEAR------YDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred CHhHHHHHHHHHhCC------CCEEEEECCCceEChhHHHHHHHHh
Confidence 122344444444332 3789999999988777 56666654
No 295
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=60.52 E-value=24 Score=33.40 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=53.7
Q ss_pred ceeeCCcchhHHHHHHHHHhc--CCcEEEEEeccChhHHH---HHhhhcccCCCCcccCCCeEEEEecccccCcCCCccc
Q 043870 117 AVPIGGCYRLIDVPMSNCINS--GIKKIYILTQFNSQSLN---RHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWF 191 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~--gi~~I~Iv~~~~~~~l~---~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~ 191 (526)
++|..++.+.|..+|+.+... .--+|+|+.+...+... +.+...+ +...+.++......+ .
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~--------~~~~v~vi~~~~~~g------~ 71 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARY--------PRVRVRVIRRPRNPG------P 71 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTT--------GG-GEEEEE----HH------H
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHc--------CCCceEEeecCCCCC------c
Confidence 456666656788888888763 23567777654433322 2222232 111256655433210 1
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCc
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGD 242 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad 242 (526)
.+...++..++...+ .+.++++..|.+...+ +..+++.+.+.+..
T Consensus 72 ~~k~~a~n~~~~~~~------~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~ 117 (228)
T PF13641_consen 72 GGKARALNEALAAAR------GDYILFLDDDTVLDPDWLERLLAAFADPGVG 117 (228)
T ss_dssp HHHHHHHHHHHHH---------SEEEEE-SSEEE-CHHHHHHHHHHHBSS--
T ss_pred chHHHHHHHHHHhcC------CCEEEEECCCcEECHHHHHHHHHHHHhCCCC
Confidence 235667777766654 3899999999988887 67777777344443
No 296
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=60.36 E-value=1.2e+02 Score=32.67 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=57.5
Q ss_pred eeeCCcchhHHHHHHHHHhcCC--c--EEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccC
Q 043870 118 VPIGGCYRLIDVPMSNCINSGI--K--KIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQG 193 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~gi--~--~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~G 193 (526)
+|.-+....|..+++.+.+... + +|+|+-+...+...+.+.+... .+. .+.+...... .|
T Consensus 55 IP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~-----~~~--~v~v~~~~~~---------~G 118 (439)
T TIGR03111 55 IPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQN-----EFP--GLSLRYMNSD---------QG 118 (439)
T ss_pred EEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHH-----hCC--CeEEEEeCCC---------CC
Confidence 3444444677778888876542 2 4666655443433333321110 001 1333322222 47
Q ss_pred hHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHH
Q 043870 194 TADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHIN 238 (526)
Q Consensus 194 t~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~ 238 (526)
-+.|+..++..... +.++++.+|.+.+.| +.++++.+.+
T Consensus 119 ka~AlN~gl~~s~g------~~v~~~DaD~~~~~d~L~~l~~~f~~ 158 (439)
T TIGR03111 119 KAKALNAAIYNSIG------KYIIHIDSDGKLHKDAIKNMVTRFEN 158 (439)
T ss_pred HHHHHHHHHHHccC------CEEEEECCCCCcChHHHHHHHHHHHh
Confidence 88888888766543 789999999988888 6777777654
No 297
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=60.30 E-value=88 Score=29.73 Aligned_cols=98 Identities=13% Similarity=0.133 Sum_probs=58.2
Q ss_pred ceeeCCcc-hhHHHHHHHHHhcCC--cEEEEEeccChhH-H----HHHhhhcccCCCCcccCCCeEEEEecccccCcCCC
Q 043870 117 AVPIGGCY-RLIDVPMSNCINSGI--KKIYILTQFNSQS-L----NRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGK 188 (526)
Q Consensus 117 LlpV~g~~-pLI~~~l~~l~~~gi--~~I~Iv~~~~~~~-l----~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~ 188 (526)
++|.-+.. .+|..+++.+.+... -+|+||-+...+. . .+++. .+ +. .+.++...+.
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~-~~--------~~-~i~~i~~~~~------ 66 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCA-QL--------GE-RFRFFHVEPL------ 66 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHH-Hh--------CC-cEEEEEcCCC------
Confidence 46777764 378888999887643 4677776543322 2 12322 11 11 1444433322
Q ss_pred ccccC-hHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHH
Q 043870 189 KWFQG-TADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHI 237 (526)
Q Consensus 189 ~~~~G-t~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~ 237 (526)
.| .++++..+..... ...+.++++..|.+...+ +..++....
T Consensus 67 ---~G~~~~a~n~g~~~a~----~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 67 ---PGAKAGALNYALERTA----PDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred ---CCCchHHHHHHHHhcC----CCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 24 3667777766553 124789999999988888 677776654
No 298
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=60.00 E-value=1e+02 Score=32.50 Aligned_cols=113 Identities=16% Similarity=0.190 Sum_probs=62.4
Q ss_pred eeeCCcchhHHHHHHHHHhcCC---cEEEEEeccChhHHHHHh---hhcccCCCCcccCCCeEEEEecccccCcCCCccc
Q 043870 118 VPIGGCYRLIDVPMSNCINSGI---KKIYILTQFNSQSLNRHI---SRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWF 191 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~gi---~~I~Iv~~~~~~~l~~~l---~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~ 191 (526)
+|..|....|..+++.+.+... -+|+||-+...+...+.+ .+.+. ....+.++.....+ ..|
T Consensus 46 Ipa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~-------~~~~i~vi~~~~~~----~g~- 113 (384)
T TIGR03469 46 VPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYG-------RGDRLTVVSGQPLP----PGW- 113 (384)
T ss_pred EecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcC-------CCCcEEEecCCCCC----CCC-
Confidence 3344444677788888876532 377777665443322322 22220 00125555432211 011
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcE
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDI 243 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ 243 (526)
.|-..++.++.....+. ....|-++++.+|.....+ +.++++...+.+.++
T Consensus 114 ~Gk~~A~n~g~~~A~~~-~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 114 SGKLWAVSQGIAAARTL-APPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred cchHHHHHHHHHHHhcc-CCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 35666777766554410 0114889999999988887 688887776666554
No 299
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=59.25 E-value=79 Score=33.10 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=56.2
Q ss_pred ceeeCCcchhHHHHHHHHHhcCC--cEEEEEeccChhH---HHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccc
Q 043870 117 AVPIGGCYRLIDVPMSNCINSGI--KKIYILTQFNSQS---LNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWF 191 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~gi--~~I~Iv~~~~~~~---l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~ 191 (526)
++|+.|..+.|..+|+.+.+..- -+|+++.....+. +.+.+.+.+ .+..+.++...+..| .
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~--------p~~~i~~v~~~~~~G------~ 111 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADF--------PDADIDLVIDARRHG------P 111 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhC--------CCCceEEEECCCCCC------C
Confidence 45666665777888888876542 4777765543332 222232222 111255554332211 1
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcC
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSG 240 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ 240 (526)
.+-..++.++....+ .|-++++.+|.....+ +..++....+.+
T Consensus 112 ~~K~~~l~~~~~~a~------ge~i~~~DaD~~~~p~~L~~lv~~~~~~~ 155 (373)
T TIGR03472 112 NRKVSNLINMLPHAR------HDILVIADSDISVGPDYLRQVVAPLADPD 155 (373)
T ss_pred ChHHHHHHHHHHhcc------CCEEEEECCCCCcChhHHHHHHHHhcCCC
Confidence 223344444433322 3889999999988888 566666654333
No 300
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=58.43 E-value=1.2e+02 Score=28.95 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=56.0
Q ss_pred ceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChHH
Q 043870 117 AVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTAD 196 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~ 196 (526)
++|+-+....|..+|+.+... ..+|+||-+...+...+.+. .+ + +.++.. .. .|-+.
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~-~~--------~---~~v~~~-~~---------~g~~~ 61 (229)
T cd02511 5 VIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAK-EY--------G---AKVYQR-WW---------DGFGA 61 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHH-Hc--------C---CEEEEC-CC---------CChHH
Confidence 355555546778888887654 36888887654444444333 22 1 333332 11 46777
Q ss_pred HHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHH
Q 043870 197 AVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHIN 238 (526)
Q Consensus 197 al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~ 238 (526)
+...++..... +-++++.+|.+...++.+.+....+
T Consensus 62 ~~n~~~~~a~~------d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 62 QRNFALELATN------DWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred HHHHHHHhCCC------CEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 77666655543 7899999999888885444433333
No 301
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=57.25 E-value=1.3e+02 Score=27.58 Aligned_cols=98 Identities=7% Similarity=0.077 Sum_probs=55.7
Q ss_pred ceeeCCcchhHHHHHHHHHhcCC--cEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccCh
Q 043870 117 AVPIGGCYRLIDVPMSNCINSGI--KKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGT 194 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~gi--~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt 194 (526)
++|.-++...|..+|+.+.+... -+|+|+-+...+...+.+.+ +.-. ++ ..+.++..... .|.
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~-~~~~----~~-~~~~~~~~~~~---------~G~ 67 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKE-YIDK----DP-FIIILIRNGKN---------LGV 67 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHH-HHhc----CC-ceEEEEeCCCC---------ccH
Confidence 35666664678888888886532 36666655433333333321 1000 01 11333332222 477
Q ss_pred HHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHH
Q 043870 195 ADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQH 235 (526)
Q Consensus 195 ~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~ 235 (526)
+.++..+....+ .+.++++..|.++..+ +..+++.
T Consensus 68 ~~~~n~g~~~~~------g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 68 ARNFESLLQAAD------GDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred HHHHHHHHHhCC------CCEEEEECCCcccChhHHHHHHHH
Confidence 777776654433 3889999999988777 7777776
No 302
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=55.55 E-value=1.4e+02 Score=30.88 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=34.4
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHH---HcCCcEEEEE
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHI---NSGGDISVCC 247 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~---~~~ad~ti~~ 247 (526)
.|-+.|+..++.... .+.++++.+|...+.+ +..+++... +.+.++++..
T Consensus 148 ~G~~~A~~~Gi~~a~------gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~Gs 201 (333)
T PTZ00260 148 KGKGGAVRIGMLASR------GKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGS 201 (333)
T ss_pred CChHHHHHHHHHHcc------CCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEee
Confidence 588889988876543 3789999999977775 566666544 3455555543
No 303
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=54.57 E-value=1.3e+02 Score=26.95 Aligned_cols=99 Identities=11% Similarity=0.092 Sum_probs=55.1
Q ss_pred eeeCCcchhHHHHHHHHHhc--CCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChH
Q 043870 118 VPIGGCYRLIDVPMSNCINS--GIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTA 195 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~--gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~ 195 (526)
+|.-++...+..+|+.+.+. ...+|+|+-........+.+.+.. . .+....+.+...... .|.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~---~--~~~~~~~~~~~~~~~---------~~~~ 68 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFK---S--QFPIPIKHVWQEDEG---------FRKA 68 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHH---h--hcCCceEEEEcCCcc---------hhHH
Confidence 56666546788889998864 235777776655544444443211 0 001111222211111 2455
Q ss_pred HHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHH
Q 043870 196 DAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHH 236 (526)
Q Consensus 196 ~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h 236 (526)
.+...+..... .+.++++.+|.+...+ +..+++.+
T Consensus 69 ~~~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 69 KIRNKAIAAAK------GDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHHhc------CCEEEEEcCCcccCHHHHHHHHHHh
Confidence 55655555443 3889999999988777 56666654
No 304
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=52.63 E-value=2.1e+02 Score=27.02 Aligned_cols=93 Identities=11% Similarity=0.130 Sum_probs=54.4
Q ss_pred eeeCCcc-hhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChHH
Q 043870 118 VPIGGCY-RLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTAD 196 (526)
Q Consensus 118 lpV~g~~-pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~ 196 (526)
+|.-+.. ..|..+|+.+.+. ..+|+||=+........... . ....+.++..... .|-+.
T Consensus 3 I~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~-~---------~~~~i~~i~~~~n---------~G~~~ 62 (237)
T cd02526 3 VVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLR-L---------NSEKIELIHLGEN---------LGIAK 62 (237)
T ss_pred EEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhh-c---------cCCcEEEEECCCc---------eehHH
Confidence 3444443 5777888888876 56777665433322222221 1 0112555554333 57777
Q ss_pred HHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHH
Q 043870 197 AVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFV 233 (526)
Q Consensus 197 al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll 233 (526)
+...+...... ...+.++++.+|.....+ +..++
T Consensus 63 a~N~g~~~a~~---~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 63 ALNIGIKAALE---NGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred hhhHHHHHHHh---CCCCEEEEECCCCCcCHhHHHHHH
Confidence 77777665531 245889999999988887 55654
No 305
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=52.20 E-value=1.5e+02 Score=35.08 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=60.5
Q ss_pred ceeeCCcc-hhHHHHHHHHHhcCC----cEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccc
Q 043870 117 AVPIGGCY-RLIDVPMSNCINSGI----KKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWF 191 (526)
Q Consensus 117 LlpV~g~~-pLI~~~l~~l~~~gi----~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~ 191 (526)
++|..|+. .++..++..+.+..- -+|+|+-....+...+... .. + +.++......
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~-~~--------~---v~yI~R~~n~-------- 324 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQ-EV--------G---VKYIARPTHE-------- 324 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHH-HC--------C---cEEEEeCCCC--------
Confidence 45556662 256677777765421 2677776655555554443 22 1 4444322221
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEEEE
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISVCC 247 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti~~ 247 (526)
.+-++++..++...+ .|.++++.+|++...| +..++..+.+. .++.++.
T Consensus 325 ~gKAGnLN~aL~~a~------GEyIavlDAD~ip~pdfL~~~V~~f~~d-P~VglVQ 374 (852)
T PRK11498 325 HAKAGNINNALKYAK------GEFVAIFDCDHVPTRSFLQMTMGWFLKD-KKLAMMQ 374 (852)
T ss_pred cchHHHHHHHHHhCC------CCEEEEECCCCCCChHHHHHHHHHHHhC-CCeEEEE
Confidence 356778887776654 3899999999998888 46666555443 3344433
No 306
>PRK10018 putative glycosyl transferase; Provisional
Probab=51.03 E-value=2.7e+02 Score=27.96 Aligned_cols=97 Identities=13% Similarity=0.217 Sum_probs=57.5
Q ss_pred eeeCCcchhHHHHHHHHHhcCCc--EEEEEeccCh--hHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccC
Q 043870 118 VPIGGCYRLIDVPMSNCINSGIK--KIYILTQFNS--QSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQG 193 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~gi~--~I~Iv~~~~~--~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~G 193 (526)
+|.-+....|..+|+.+.+.-.. +|+||-.... +.+.+++. .+ .+..+.++..... .|
T Consensus 11 ip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~-~~--------~~~ri~~i~~~~n---------~G 72 (279)
T PRK10018 11 MPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVT-AL--------NDPRITYIHNDIN---------SG 72 (279)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHH-Hc--------CCCCEEEEECCCC---------CC
Confidence 34445446777888888765433 6666644222 22333333 21 1122555554333 57
Q ss_pred hHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHH
Q 043870 194 TADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHIN 238 (526)
Q Consensus 194 t~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~ 238 (526)
.+.+.-.++..... +.++++.+|.+..++ +..+++...+
T Consensus 73 ~~~a~N~gi~~a~g------~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 73 ACAVRNQAIMLAQG------EYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHHHHHHHHHHcCC------CEEEEECCCCCCCccHHHHHHHHHHh
Confidence 88887777665543 889999999988777 6777765443
No 307
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=48.51 E-value=1.1e+02 Score=32.29 Aligned_cols=106 Identities=10% Similarity=0.138 Sum_probs=68.8
Q ss_pred cceeeCCcch-hHHHHHHHHHhcCCc--EEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCcccc
Q 043870 116 PAVPIGGCYR-LIDVPMSNCINSGIK--KIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQ 192 (526)
Q Consensus 116 ~LlpV~g~~p-LI~~~l~~l~~~gi~--~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~ 192 (526)
-++|.-|..+ .++.+++.+.+.... +|++|.....+...+.+.+... +++ ..+.+...... ..
T Consensus 58 viiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~-----~~~-~~~~~~~~~~~--------~~ 123 (439)
T COG1215 58 VIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGA-----EYG-PNFRVIYPEKK--------NG 123 (439)
T ss_pred EEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHh-----hcC-cceEEEecccc--------Cc
Confidence 4556666657 899999999987643 7888887666665666654321 111 01333311011 25
Q ss_pred ChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCC
Q 043870 193 GTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGG 241 (526)
Q Consensus 193 Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~a 241 (526)
|.+.++..++...+ .|-++++.+|.....| +.+++..+.+.+.
T Consensus 124 gK~~al~~~l~~~~------~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 124 GKAGALNNGLKRAK------GDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred cchHHHHHHHhhcC------CCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 77888888876654 3889999999999888 7888877765443
No 308
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=45.35 E-value=3.5e+02 Score=27.78 Aligned_cols=46 Identities=17% Similarity=0.092 Sum_probs=34.4
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEE
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDIS 244 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~t 244 (526)
.|-+.|+..+....+ .+.++++.+|...+++ +.++++... .++|++
T Consensus 76 ~G~~~A~~~G~~~A~------gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 76 YGQHSAIMAGFSHVT------GDLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred CCHHHHHHHHHHhCC------CCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 578888988876554 3789999999987775 788888764 456754
No 309
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=44.83 E-value=3.2e+02 Score=26.91 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHhcCCcEEEEEeccC--hhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChHHHHHHHH
Q 043870 125 RLIDVPMSNCINSGIKKIYILTQFN--SQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFI 202 (526)
Q Consensus 125 pLI~~~l~~l~~~gi~~I~Iv~~~~--~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~ 202 (526)
..|..+++.+.+. ..+|+||=+.. .+.+.+.+. .+ ..+.++..... .|-+.|...++
T Consensus 8 ~~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~-~~----------~~i~~i~~~~N---------~G~a~a~N~Gi 66 (281)
T TIGR01556 8 EHLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARL-RG----------QKIALIHLGDN---------QGIAGAQNQGL 66 (281)
T ss_pred HHHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhc-cC----------CCeEEEECCCC---------cchHHHHHHHH
Confidence 3566677777665 45777765542 223333322 11 12666654333 58888888887
Q ss_pred HHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHc
Q 043870 203 WMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINS 239 (526)
Q Consensus 203 ~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~ 239 (526)
+.... ...+.++++..|.+...+ +..+++.....
T Consensus 67 ~~a~~---~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 67 DASFR---RGVQGVLLLDQDSRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred HHHHH---CCCCEEEEECCCCCCCHHHHHHHHHHHHhc
Confidence 66532 345899999999988777 56667665444
No 310
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=43.42 E-value=55 Score=27.33 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=8.4
Q ss_pred CcEECCCCEEeceEEEC
Q 043870 427 RSRLEYGVELKDTMMMG 443 (526)
Q Consensus 427 ~~~I~~~~~i~~~v~~~ 443 (526)
...|+.++.|+..+...
T Consensus 36 ~v~i~~~~~v~G~i~~~ 52 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKAD 52 (101)
T ss_pred EEEEcCCCEEEEEEEEe
Confidence 44555555555554433
No 311
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=42.55 E-value=1.8e+02 Score=27.51 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=51.2
Q ss_pred eeeCCcchhHHHHHHHHHhcCC----cEEEEEeccChhHHHHHhhh---cccCCCCcccCCCeEEEEecccccCcCCCcc
Q 043870 118 VPIGGCYRLIDVPMSNCINSGI----KKIYILTQFNSQSLNRHISR---TYNLGDGMNFGDGFVEVLAATQRQGESGKKW 190 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~gi----~~I~Iv~~~~~~~l~~~l~~---~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~ 190 (526)
+|.-+....|..+|+.+.+... -+|+|+-+ ..+...+.+.+ .+. ..+ ..+.++.....
T Consensus 7 Ip~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~-~~~-----~~i~~~~~~~~-------- 71 (232)
T cd06437 7 LPVFNEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYA-AQG-----VNIKHVRRADR-------- 71 (232)
T ss_pred EecCCcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHh-hcC-----CceEEEECCCC--------
Confidence 4555554688889999886432 25555544 33222222221 110 000 11333322221
Q ss_pred ccC-hHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHH
Q 043870 191 FQG-TADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQH 235 (526)
Q Consensus 191 ~~G-t~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~ 235 (526)
.| .+.++..+....+ .+.++++.+|.+...+ +..+...
T Consensus 72 -~G~k~~a~n~g~~~a~------~~~i~~~DaD~~~~~~~l~~~~~~ 111 (232)
T cd06437 72 -TGYKAGALAEGMKVAK------GEYVAIFDADFVPPPDFLQKTPPY 111 (232)
T ss_pred -CCCchHHHHHHHHhCC------CCEEEEEcCCCCCChHHHHHhhhh
Confidence 24 4566766665544 3899999999988888 5554443
No 312
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=42.26 E-value=2.1e+02 Score=29.15 Aligned_cols=50 Identities=8% Similarity=0.146 Sum_probs=34.5
Q ss_pred cChHHHHHHHHHHhhhhccCCCCeEEEEcCCee-cccC-HHHHHHHHH-HcCCcEEEEE
Q 043870 192 QGTADAVRQFIWMFEDAKHRNIENILILSGDHL-YRMD-YMDFVQHHI-NSGGDISVCC 247 (526)
Q Consensus 192 ~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l-~~~d-l~~ll~~h~-~~~ad~ti~~ 247 (526)
.|-+.++..+....+ .+.++++.+|.. .+.+ +.++++... +.+.+++..+
T Consensus 101 ~Gkg~A~~~g~~~a~------gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 101 PGKGEALWRSLAATT------GDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred CCHHHHHHHHHHhcC------CCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 477788877765443 388999999995 6665 677887665 3455655544
No 313
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=37.23 E-value=3.3e+02 Score=25.00 Aligned_cols=106 Identities=10% Similarity=0.043 Sum_probs=59.4
Q ss_pred ceeeCCcchhHHHHHHHHHhcC-CcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChH
Q 043870 117 AVPIGGCYRLIDVPMSNCINSG-IKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTA 195 (526)
Q Consensus 117 LlpV~g~~pLI~~~l~~l~~~g-i~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~ 195 (526)
++|.-+....|..+|+.+.+.. -.+|+||-....+...+.+. .. . ....+.++...... ...|-+
T Consensus 2 iIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~-~~-~------~~~~v~~i~~~~~~------~~~Gk~ 67 (191)
T cd06436 2 LVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR-LA-I------TDSRVHLLRRHLPN------ARTGKG 67 (191)
T ss_pred EEeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh-he-e------cCCcEEEEeccCCc------CCCCHH
Confidence 3566665578888899888754 23677776655444444443 11 0 00114444321110 014788
Q ss_pred HHHHHHHHHhhhhc---c--CCCCeEEEEcCCeecccC-HHHHHHHH
Q 043870 196 DAVRQFIWMFEDAK---H--RNIENILILSGDHLYRMD-YMDFVQHH 236 (526)
Q Consensus 196 ~al~~~~~~i~~~~---~--~~~e~~lil~gD~l~~~d-l~~ll~~h 236 (526)
.++..++....... . ...+-++++.+|.....+ +..+.+..
T Consensus 68 ~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 68 DALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred HHHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 88888877654100 0 012568999999998888 45544433
No 314
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=35.86 E-value=3.3e+02 Score=31.38 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHH
Q 043870 193 GTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHIN 238 (526)
Q Consensus 193 Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~ 238 (526)
+-++++..++...+ .+.++++.+|++...| +.+++..+.+
T Consensus 215 ~KAgnLN~al~~a~------gd~Il~lDAD~v~~pd~L~~~v~~f~~ 255 (713)
T TIGR03030 215 AKAGNINNALKHTD------GELILIFDADHVPTRDFLQRTVGWFVE 255 (713)
T ss_pred CChHHHHHHHHhcC------CCEEEEECCCCCcChhHHHHHHHHHHh
Confidence 44677777766554 3899999999998888 5677766544
No 315
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=35.66 E-value=2.7e+02 Score=27.43 Aligned_cols=129 Identities=15% Similarity=0.200 Sum_probs=63.7
Q ss_pred CceEEEEEcCCCCccccC---ccCCC--CccceeeCCcchhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCC
Q 043870 91 KAVASIILGGGAGTRLFP---LTGRR--AKPAVPIGGCYRLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGD 165 (526)
Q Consensus 91 ~~~~aIILAaG~GtRl~P---lt~~~--pK~LlpV~g~~pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~ 165 (526)
.++.+|+.+.-.|+-..- +.... .++-+|+- .-..-.++.|...|+++|.|++.|..+ +.+++.+.+. ..
T Consensus 70 a~~dvi~~~cTsgs~~~G~~~~~~~i~~~~~g~p~t---t~~~A~~~AL~alg~~RIalvTPY~~~-v~~~~~~~l~-~~ 144 (239)
T TIGR02990 70 EELDVVAYSCTSASVVIGDDEVTRAINAAKPGTPVV---TPSSAAVDGLAALGVRRISLLTPYTPE-TSRPMAQYFA-VR 144 (239)
T ss_pred CCCCEEEEccchhheecCHHHHHHHHHhcCCCCCee---CHHHHHHHHHHHcCCCEEEEECCCcHH-HHHHHHHHHH-hC
Confidence 356788887666654321 00000 01112332 233456788888999999999999865 3444443321 01
Q ss_pred CcccCCCeEEEEecccccCcCCCccccChHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHH
Q 043870 166 GMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQH 235 (526)
Q Consensus 166 ~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~ 235 (526)
| ++|+....-.-++...-..=+.++++.+...+.. ..-+.++++|-.+-..++-+-++.
T Consensus 145 G-------~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~----~~aDAifisCTnLrt~~vi~~lE~ 203 (239)
T TIGR02990 145 G-------FEIVNFTCLGLTDDREMARISPDCIVEAALAAFD----PDADALFLSCTALRAATCAQRIEQ 203 (239)
T ss_pred C-------cEEeeeeccCCCCCceeeecCHHHHHHHHHHhcC----CCCCEEEEeCCCchhHHHHHHHHH
Confidence 1 3333221110000001111244555555544431 234667777887777776555544
No 316
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=35.54 E-value=3.7e+02 Score=25.05 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=56.3
Q ss_pred eeeCCcchhHHHHHHHHHhcCC---cEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccCh
Q 043870 118 VPIGGCYRLIDVPMSNCINSGI---KKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGT 194 (526)
Q Consensus 118 lpV~g~~pLI~~~l~~l~~~gi---~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt 194 (526)
+|.-+....|..+|+.+.+.-. -+|+||-........+.+. .|.- +.....+.++...... .+..|-
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~-~~~~----~~~~~~~~~~~~~~~~-----~~~~G~ 72 (219)
T cd06913 3 LPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIE-KWRK----KLEDSGVIVLVGSHNS-----PSPKGV 72 (219)
T ss_pred EeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHH-HHHH----hCcccCeEEEEecccC-----CCCccH
Confidence 4555554688888888886532 3677775543332222222 1100 0011113333211110 112466
Q ss_pred HHHHHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcC
Q 043870 195 ADAVRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSG 240 (526)
Q Consensus 195 ~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ 240 (526)
+.+...+..... .+.++++.+|.++..+ +..++....+..
T Consensus 73 ~~a~N~g~~~a~------gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 73 GYAKNQAIAQSS------GRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred HHHHHHHHHhcC------CCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 667666554433 3889999999987776 666676665544
No 317
>PRK10063 putative glycosyl transferase; Provisional
Probab=32.52 E-value=4.8e+02 Score=25.45 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=54.6
Q ss_pred eeCCcchhHHHHHHHHHhc----CC-cEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccC
Q 043870 119 PIGGCYRLIDVPMSNCINS----GI-KKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQG 193 (526)
Q Consensus 119 pV~g~~pLI~~~l~~l~~~----gi-~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~G 193 (526)
|.-+....|..+++.+.+. +. -+|+|+=+...+...+.+. .+. . ...+.++.. .. .|
T Consensus 8 ~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~-~~~--~-----~~~i~~i~~-~~---------~G 69 (248)
T PRK10063 8 VAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLE-NLN--G-----IFNLRFVSE-PD---------NG 69 (248)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHH-Hhc--c-----cCCEEEEEC-CC---------CC
Confidence 3333335777788877531 22 3666664433333344443 221 0 001444432 11 58
Q ss_pred hHHHHHHHHHHhhhhccCCCCeEEEEcCCeecccCHHHHHHHHHHc
Q 043870 194 TADAVRQFIWMFEDAKHRNIENILILSGDHLYRMDYMDFVQHHINS 239 (526)
Q Consensus 194 t~~al~~~~~~i~~~~~~~~e~~lil~gD~l~~~dl~~ll~~h~~~ 239 (526)
-+.|+..++..... +.++++++|.++..+..+++......
T Consensus 70 ~~~A~N~Gi~~a~g------~~v~~ld~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 70 IYDAMNKGIAMAQG------RFALFLNSGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred HHHHHHHHHHHcCC------CEEEEEeCCcccCcCHHHHHHHHHhC
Confidence 88888888776543 78889998888777765555554433
No 318
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=31.84 E-value=2e+02 Score=26.15 Aligned_cols=23 Identities=4% Similarity=-0.081 Sum_probs=9.9
Q ss_pred eceEECCC-cEECCCCEEeceEEE
Q 043870 420 EHSIVGIR-SRLEYGVELKDTMMM 442 (526)
Q Consensus 420 ~~s~ig~~-~~I~~~~~i~~~v~~ 442 (526)
+..+...+ ..|+....|+..+..
T Consensus 49 ~G~v~s~~~iiv~~~g~V~gei~a 72 (146)
T COG1664 49 EGDVHSDGGIVVGESGRVEGEIEA 72 (146)
T ss_pred EEEEEeCCCEEECCccEEEEEEEe
Confidence 33333333 444444444444433
No 319
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=30.81 E-value=74 Score=27.67 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.0
Q ss_pred CcchhHHHHHHHHHhcCCcEEEEEe
Q 043870 122 GCYRLIDVPMSNCINSGIKKIYILT 146 (526)
Q Consensus 122 g~~pLI~~~l~~l~~~gi~~I~Iv~ 146 (526)
+. |-++..++.|...|.++|+|+=
T Consensus 44 ~~-P~l~~~l~~l~~~g~~~v~vvP 67 (126)
T PRK00923 44 NE-PTIPEALKKLIGTGADKIIVVP 67 (126)
T ss_pred CC-CCHHHHHHHHHHcCCCEEEEEc
Confidence 56 8999999999999999998873
No 320
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=27.98 E-value=6.3e+02 Score=25.35 Aligned_cols=104 Identities=11% Similarity=0.067 Sum_probs=59.5
Q ss_pred eCCcchhHHHHHHHHHhcCCcEEEE--EeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChHHH
Q 043870 120 IGGCYRLIDVPMSNCINSGIKKIYI--LTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADA 197 (526)
Q Consensus 120 V~g~~pLI~~~l~~l~~~gi~~I~I--v~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~a 197 (526)
.+.. ..+..++..+.+.......+ |-+.......+.+.... + ..+.++..... .|=+++
T Consensus 12 yn~~-~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~-------~--~~v~~i~~~~N---------lG~agg 72 (305)
T COG1216 12 YNRG-EDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF-------F--PNVRLIENGEN---------LGFAGG 72 (305)
T ss_pred cCCH-HHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc-------C--CcEEEEEcCCC---------ccchhh
Confidence 3444 56777788888775433333 34444434444554331 0 12566655444 455555
Q ss_pred HHHHHHHhhhhccCCCCeEEEEcCCeecccC-HHHHHHHHHHcCCcEEE
Q 043870 198 VRQFIWMFEDAKHRNIENILILSGDHLYRMD-YMDFVQHHINSGGDISV 245 (526)
Q Consensus 198 l~~~~~~i~~~~~~~~e~~lil~gD~l~~~d-l~~ll~~h~~~~ad~ti 245 (526)
.......... ...+.+++++-|.....+ +.++++.+.+.+..+.+
T Consensus 73 ~n~g~~~a~~---~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~ 118 (305)
T COG1216 73 FNRGIKYALA---KGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVV 118 (305)
T ss_pred hhHHHHHHhc---CCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEe
Confidence 5544433321 111269999999988887 78999988877665443
No 321
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=26.46 E-value=4.9e+02 Score=23.62 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=12.9
Q ss_pred eEECCCCEEeceEECCCCEECCCcEEc
Q 043870 464 VGIGRDTKIKNCIIDKNAKIGKNVIIA 490 (526)
Q Consensus 464 ~~Ig~~~~i~~~iI~~~~~Ig~~~~i~ 490 (526)
+.|...+++..-+=.+.-.|.+++++.
T Consensus 91 Vei~~~g~v~GdI~~~~i~v~~Ga~f~ 117 (146)
T COG1664 91 VELYPGGRVIGDITTKEITVEEGAIFE 117 (146)
T ss_pred EEEcCCcEEeeeecccEEEEccCCEEE
Confidence 555555555443334444444444443
No 322
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=22.17 E-value=4.5e+02 Score=21.66 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=11.1
Q ss_pred eEECCCCEEeceEECCCCEE
Q 043870 464 VGIGRDTKIKNCIIDKNAKI 483 (526)
Q Consensus 464 ~~Ig~~~~i~~~iI~~~~~I 483 (526)
+.|+.++.+...+-.+++.|
T Consensus 37 v~i~~~~~v~G~i~~~~~~i 56 (101)
T PF04519_consen 37 VKIGGNGEVKGDIKADDVII 56 (101)
T ss_pred EEEcCCCEEEEEEEEeEEEE
Confidence 56666666664444444444
No 323
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=21.26 E-value=1.8e+02 Score=28.33 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHhcCCcEEEEEeccChhHHHHHhhhcccCCCCcccCCCeEEEEecccccCcCCCccccChHHHHHHHHHH
Q 043870 125 RLIDVPMSNCINSGIKKIYILTQFNSQSLNRHISRTYNLGDGMNFGDGFVEVLAATQRQGESGKKWFQGTADAVRQFIWM 204 (526)
Q Consensus 125 pLI~~~l~~l~~~gi~~I~Iv~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~vl~~~~~~~~~~~~~~~Gt~~al~~~~~~ 204 (526)
.|+..++..+.. ++ ++||+... .+.++-... ++ ++++.+. . .|.-.+|.++...
T Consensus 32 aMl~Dvl~al~~--v~-v~vVs~d~--~v~~~a~~~--------~g---~~vl~d~-~---------~gLN~Al~~a~~~ 85 (217)
T PF01983_consen 32 AMLRDVLAALRA--VD-VVVVSRDP--EVAALARAR--------LG---AEVLPDP-G---------RGLNAALNAALAA 85 (217)
T ss_dssp HHHHHHHHHHHH---S-EEEEES----S-TTTTT-----------S---SEEEE-------------S-HHHHHHHHHH-
T ss_pred HHHHHHHHHHHh--cC-eEEeccch--hhhhhhhhc--------cC---CeEecCC-C---------CCHHHHHHHHHhc
Confidence 588889998877 66 77776532 111111101 11 5566543 1 4677888887332
Q ss_pred hhhhccCCCCeEEEEcCCe--ecccCHHHHHHHH
Q 043870 205 FEDAKHRNIENILILSGDH--LYRMDYMDFVQHH 236 (526)
Q Consensus 205 i~~~~~~~~e~~lil~gD~--l~~~dl~~ll~~h 236 (526)
. ..+.++++++|+ +...++..++...
T Consensus 86 ~------~~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 86 A------GDDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp H--------S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred c------CCCceEEeecCCccCCHHHHHHHHhcc
Confidence 2 238899999999 5556788888653
Done!