BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043871
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6QPN6|GILT_BOVIN Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus
GN=IFI30 PE=2 SV=1
Length = 244
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 97/188 (51%), Gaps = 17/188 (9%)
Query: 44 VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNET----IVCE 99
VN+S+YYE+L EF+ +L + L I+N+ L+P+G AQ E N + C+
Sbjct: 56 VNVSLYYEALCPGCREFLIRELFPTWLMVL-EILNVTLVPYGNAQ--ERNVSGKWEFTCQ 112
Query: 100 HGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNL--KLSP 157
HGE EC N + AC + EQ + F I CLEE D E+ + C Q K+S
Sbjct: 113 HGERECLLNKVEACLLDQL-EQKIAFLTIVCLEEMD-----DMEQNLKPCLQIYAPKVSA 166
Query: 158 NLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSG 217
+ I +C G L I A T+ L+PP ++VPW+ +NG+ + D + + VC Y G
Sbjct: 167 DSIMECATGNRGMQLLHINAQLTDALRPPHKYVPWVVVNGEHMK-DAEHLLHLVCRLYQG 225
Query: 218 SHVPEACK 225
P+ C+
Sbjct: 226 QK-PDVCQ 232
>sp|B3SP85|GILT_PIG Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa
GN=IFI30 PE=2 SV=1
Length = 246
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 14/202 (6%)
Query: 36 PTVKQDEK-VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQ--IVEP 92
P K D VN+++YYESL + F+ +L + + I+N+ L+P+G AQ V
Sbjct: 49 PVGKSDPPPVNVNLYYESLCNGCRYFLVRELFPTWLM-VWEILNVTLVPYGNAQERNVSG 107
Query: 93 NETIVCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQ- 151
C+HGE EC N + AC + E+ + F I C+EE D EK C Q
Sbjct: 108 RWEFTCQHGEQECKMNKVEACLLDKL-EKNMAFLTIVCIEELD-----DMEKNLEPCLQI 161
Query: 152 -NLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKY 210
K+SP+ I +C G L I A T+ LKPP ++VPW+ +NG + + ++
Sbjct: 162 YAPKVSPDSIMECAMGDRGMQLLHINAQLTDALKPPHEYVPWVVVNGKPMT-EKDQLLRL 220
Query: 211 VCEAYSGSHVPEACKEMPKSAK 232
VC+ Y G P+ C+ + S K
Sbjct: 221 VCQLYEGEK-PDVCQILASSHK 241
>sp|P13284|GILT_HUMAN Gamma-interferon-inducible lysosomal thiol reductase OS=Homo
sapiens GN=IFI30 PE=1 SV=3
Length = 250
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 17/196 (8%)
Query: 44 VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNET----IVCE 99
VN+++YYE+L F+ +L + + I+N+ L+P+G AQ E N + C+
Sbjct: 62 VNVTLYYEALCGGCRAFLIRELFPTWLL-VMEILNVTLVPYGNAQ--EQNVSGRWEFKCQ 118
Query: 100 HGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLK--LSP 157
HGE+EC FN + AC + +L T + C+EE D E+ C Q LSP
Sbjct: 119 HGEEECKFNKVEACVLDELDMELAFLTIV-CMEEFE-----DMERSLPLCLQLYAPGLSP 172
Query: 158 NLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSG 217
+ I +C G L A T+ L+PP ++VPW+T+NG + D + VC+ Y G
Sbjct: 173 DTIMECAMGDRGMQLMHANAQRTDALQPPHEYVPWVTVNGKPL-EDQTQLLTLVCQLYQG 231
Query: 218 SHVPEACKEMPKSAKT 233
P+ C S ++
Sbjct: 232 KK-PDVCPSSTSSLRS 246
>sp|Q499T2|GILT_RAT Gamma-interferon-inducible lysosomal thiol reductase OS=Rattus
norvegicus GN=Ifi30 PE=2 SV=1
Length = 248
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 93/193 (48%), Gaps = 12/193 (6%)
Query: 44 VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNET--IVCEHG 101
VN+S+YYESL F+ +L + + I+N+ L+P+G AQ + T C+HG
Sbjct: 59 VNVSLYYESLCGACRYFLVRNLFPTWLM-VMEIMNITLVPYGNAQERNVSGTWEFTCQHG 117
Query: 102 EDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNL--KLSPNL 159
E EC N + AC + E+ F I C+EE D EK C Q ++SP
Sbjct: 118 ELECKLNKVEACLLDKL-EKEAAFLTIVCMEEME-----DMEKKLGPCLQLYVPEVSPES 171
Query: 160 IKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSH 219
I +C G L A T+ L+PP ++VPW+ +N + D + VCE Y G+
Sbjct: 172 IMECATGKRGTELMHENAQLTDALQPPHEYVPWVLVNEKPLT-DPSQLLSSVCELYQGTE 230
Query: 220 VPEACKEMPKSAK 232
P+ C M + +
Sbjct: 231 KPDICSSMADAPR 243
>sp|Q9ESY9|GILT_MOUSE Gamma-interferon-inducible lysosomal thiol reductase OS=Mus
musculus GN=Ifi30 PE=1 SV=3
Length = 248
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 12/193 (6%)
Query: 44 VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNET--IVCEHG 101
V +S+YYESL F+ DL + + I+N+ L+P+G AQ + T C+HG
Sbjct: 59 VRVSLYYESLCGACRYFLVRDLFPTWLM-VMEIMNITLVPYGNAQERNVSGTWEFTCQHG 117
Query: 102 EDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNL--KLSPNL 159
E EC N++ AC + E+ F I C+EE D EK C Q ++SP
Sbjct: 118 ELECRLNMVEACLLDKL-EKEAAFLTIVCMEEMD-----DMEKKLGPCLQVYAPEVSPES 171
Query: 160 IKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGPDYGNFVKYVCEAYSGSH 219
I +C G L A T+ L PP ++VPW+ +N + D + VC+ Y G+
Sbjct: 172 IMECATGKRGTQLMHENAQLTDALHPPHEYVPWVLVNEKPLK-DPSELLSIVCQLYQGTE 230
Query: 220 VPEACKEMPKSAK 232
P+ C + S +
Sbjct: 231 KPDICSSIADSPR 243
>sp|O17861|YVRI_CAEEL GILT-like protein F37H8.5 OS=Caenorhabditis elegans GN=F37H8.5 PE=1
SV=1
Length = 277
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 98/196 (50%), Gaps = 10/196 (5%)
Query: 41 DEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEH 100
++K+N++V E+L F+T L + K+ + VN+ L+P+G A+++E + TI C+H
Sbjct: 73 NQKINITVLIEALCPDCQNFLTKQLYPIVFKNFANYVNIELVPFGNAKVLE-DGTIKCQH 131
Query: 101 GEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPN-- 158
GE+EC N C I + +Q T + C+EE S ++ + C + L++ +
Sbjct: 132 GEEECSINKFEGCFIDSMQDQSPLPT-LSCIEE-SLQKKVEFADAVQQCFEKLQIGGDIQ 189
Query: 159 -LIKDCYDNGTGRWLELIYAAETERLKPPI-QFVPWLTLNGDAVGPDYG---NFVKYVCE 213
L + C + G L+ AA T + P +FVPW+ +NG ++ G +CE
Sbjct: 190 RLTQSCLVSKLGADLQNKAAAATANVWPEQHKFVPWVIINGVSLTSFQGFQNQLPTLLCE 249
Query: 214 AYSGSHVPEACKEMPK 229
YSG C+ K
Sbjct: 250 WYSGDKAIPYCEAALK 265
>sp|P34276|YKJ2_CAEEL GILT-like protein C02D5.2 OS=Caenorhabditis elegans GN=C02D5.2 PE=3
SV=1
Length = 323
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 17/213 (7%)
Query: 27 VEYDGARIFPTVKQ--DEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVN---LRL 81
+EY+ + PT+K+ + V L VY E+ + F L K + D+ +N L +
Sbjct: 121 IEYE-PKAGPTIKEPVENIVKLDVYMEAQCPDTSRFFRQQLKKAW--DILGRLNRIELNV 177
Query: 82 IPWGKAQIVEPNETI--VCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPT 139
IP+GKA+ E C+HG EC N + C I + + + C++ +
Sbjct: 178 IPFGKARCTEKGNDFECQCQHGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQGKY---S 234
Query: 140 LDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDA 199
LD+ + +N +++C GR L + +T L P I F+PW+ +NG
Sbjct: 235 LDE--AMKCVTENYPSEYERMRECASGTRGRRLLALSGQKTASLTPAIDFIPWIVINGSR 292
Query: 200 VGPDYGNFVKYVCEAYSGSHVPEACKEMPKSAK 232
+ + VCEA +P ACK+ +S +
Sbjct: 293 NSDALYDLTQNVCEAMQP--MPSACKDYLRSLQ 323
>sp|Q61Z40|YO30_CAEBR GILT-like protein CBG03282 OS=Caenorhabditis briggsae GN=CBG03282
PE=3 SV=1
Length = 220
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 17/205 (8%)
Query: 17 FMFIFPHCSSVEYDGARIFPTVKQDEKVNLSVYYES-LSDTGAEFITHDLGKVFEKDLTS 75
F+FI CSS + + V EKVN+ + E SDT H L T
Sbjct: 13 FLFILVLCSSKDTE-------VNNGEKVNIVAFGEGRCSDTSFWMKWHWLPMWRMLGSTG 65
Query: 76 IVNLRLIPWG-KAQIVEPN--ETIVCE--HGEDECYFNVIHACAIKAWPEQLLHFTFIKC 130
+N P+G K V+ + + +VCE HG EC N + AC I+A P + + C
Sbjct: 66 RINFEYHPYGIKTTCVDSDSGDDVVCECHHGARECLLNQLQACVIEALPNFEEYMEVVTC 125
Query: 131 LEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFV 190
++ ++ E + + KL + C D+ GR L + ++ P + +
Sbjct: 126 IQGKQ-NISMAAEACFN---EPSKLERAKMMSCADSRHGRKLFSDHENFVAQMAPEMDWA 181
Query: 191 PWLTLNGDAVGPDYGNFVKYVCEAY 215
PW+ +NG + +++C+ +
Sbjct: 182 PWILINGKRYKEAEEDLWQFLCDRF 206
>sp|Q23570|YO30_CAEEL GILT-like protein ZK669.3 OS=Caenorhabditis elegans GN=ZK669.3 PE=1
SV=1
Length = 218
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 11/148 (7%)
Query: 74 TSIVNLRLIPWG-KAQIV--EPNETIVCE--HGEDECYFNVIHACAIKAWPEQLLHFTFI 128
T +N P+G K V E + +VC+ HG EC N + AC I+A P + +
Sbjct: 62 TGRINFDYHPYGIKTTCVDSESADDVVCDCHHGNRECLLNQLQACVIEALPNFEDYMEVV 121
Query: 129 KCLEETSWGPTLDKEKVWRTCCQN-LKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPI 187
C++ + C + KL + +C ++ GR L ++ P +
Sbjct: 122 TCIQGKQ-----NISMAAEVCFEGPTKLDRTKMMECAESRHGRKLFSDQENIVAQMAPEM 176
Query: 188 QFVPWLTLNGDAVGPDYGNFVKYVCEAY 215
+ PW+ +NG + +++C+ +
Sbjct: 177 DWAPWILINGTRYKEAEEDLWQFLCDRF 204
>sp|O05979|Y789_RICPR Uncharacterized protein RP789 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP789 PE=4 SV=2
Length = 553
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 82 IPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQLLHFTFIKCLEETSWGPTLD 141
+ K QI E N+ + G F H C+I + F +I C SW P +
Sbjct: 101 VDLSKVQIDEANKNVRAL-GLKNIEF---HHCSITDIDDSFGKFDYIICHGVISWVPKIV 156
Query: 142 KEKVWRTCCQNL 153
++K+++ C +NL
Sbjct: 157 RDKIFKVCNRNL 168
>sp|A8YVK1|ADDB_LACH4 ATP-dependent helicase/deoxyribonuclease subunit B OS=Lactobacillus
helveticus (strain DPC 4571) GN=rexB PE=3 SV=1
Length = 1160
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 41 DEKVNLSVYYESLSDTGA-EFITHDLGKVFEKDLTSIVN 78
+EK++ S+YY+ L D GA EF HDL + ++ L+ I N
Sbjct: 664 NEKLDPSIYYQRLQDYGAPEFSQHDLPEKMQELLSFITN 702
>sp|B9MDS3|QUEF_ACIET NADPH-dependent 7-cyano-7-deazaguanine reductase OS=Acidovorax
ebreus (strain TPSY) GN=queF PE=3 SV=1
Length = 281
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 28 EYDGARIFPTVKQDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKA 87
+YD + +FP + D++ + + D A F DL FE S +NLR GK
Sbjct: 18 QYDASLLFPIPRADKRAEIGI------DGNAPFFGADLWTAFE---LSWLNLR----GKP 64
Query: 88 QIVEPNETIVCE 99
Q+ + T+ CE
Sbjct: 65 QVAIAHITVPCE 76
>sp|A1WAZ1|QUEF_ACISJ NADPH-dependent 7-cyano-7-deazaguanine reductase OS=Acidovorax
sp. (strain JS42) GN=queF PE=3 SV=1
Length = 281
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 28 EYDGARIFPTVKQDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKA 87
+YD + +FP + D++ + + D A F DL FE S +NLR GK
Sbjct: 18 QYDASLLFPIPRADKRAEIGI------DGNAPFFGADLWTAFE---LSWLNLR----GKP 64
Query: 88 QIVEPNETIVCE 99
Q+ + T+ CE
Sbjct: 65 QVAIAHITVPCE 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,048,641
Number of Sequences: 539616
Number of extensions: 4265066
Number of successful extensions: 7991
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7957
Number of HSP's gapped (non-prelim): 16
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)