Query 043871
Match_columns 255
No_of_seqs 121 out of 389
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3160 Gamma-interferon induc 100.0 5E-52 1.1E-56 366.8 13.9 180 40-225 37-217 (220)
2 PF03227 GILT: Gamma interfero 100.0 1.7E-37 3.7E-42 246.7 8.9 106 44-155 1-107 (108)
3 cd03023 DsbA_Com1_like DsbA fa 98.5 5E-06 1.1E-10 66.9 13.2 139 40-201 3-141 (154)
4 cd03019 DsbA_DsbA DsbA family, 98.4 3.2E-06 7E-11 70.3 10.6 137 41-200 14-154 (178)
5 PF13462 Thioredoxin_4: Thiore 98.2 1.1E-05 2.4E-10 66.0 9.0 147 40-211 10-160 (162)
6 cd03024 DsbA_FrnE DsbA family, 97.5 0.0011 2.4E-08 56.4 11.0 151 46-200 1-186 (201)
7 PRK10954 periplasmic protein d 97.3 0.0036 7.7E-08 54.6 11.8 138 42-200 37-178 (207)
8 cd03025 DsbA_FrnE_like DsbA fa 97.3 0.0021 4.5E-08 54.3 9.4 150 44-199 1-179 (193)
9 PF13743 Thioredoxin_5: Thiore 96.9 0.0039 8.5E-08 53.4 8.0 144 48-197 2-155 (176)
10 PF01323 DSBA: DSBA-like thior 96.7 0.0081 1.8E-07 50.4 8.3 145 45-198 1-176 (193)
11 COG2761 FrnE Predicted dithiol 96.2 0.036 7.8E-07 49.8 9.5 170 40-216 2-214 (225)
12 cd03022 DsbA_HCCA_Iso DsbA fam 95.1 0.052 1.1E-06 45.6 5.8 56 143-200 123-178 (192)
13 COG1651 DsbG Protein-disulfide 93.4 0.75 1.6E-05 40.5 9.7 149 42-211 84-239 (244)
14 cd02972 DsbA_family DsbA famil 87.2 0.94 2E-05 32.6 3.9 40 46-87 1-40 (98)
15 PRK11657 dsbG disulfide isomer 86.4 1.5 3.2E-05 39.7 5.4 44 40-87 115-158 (251)
16 PRK10877 protein disulfide iso 86.3 9.1 0.0002 34.2 10.4 43 40-87 105-147 (232)
17 PF14595 Thioredoxin_9: Thiore 84.9 1.6 3.6E-05 35.6 4.6 45 40-87 39-83 (129)
18 cd03020 DsbA_DsbC_DsbG DsbA fa 78.2 4 8.6E-05 34.9 4.8 42 40-87 75-116 (197)
19 cd02973 TRX_GRX_like Thioredox 77.7 4.7 0.0001 27.9 4.2 17 44-60 1-17 (67)
20 TIGR00411 redox_disulf_1 small 75.9 5.8 0.00013 28.2 4.5 25 44-69 1-25 (82)
21 cd03021 DsbA_GSTK DsbA family, 67.2 12 0.00026 32.4 5.1 51 145-197 134-187 (209)
22 cd03026 AhpF_NTD_C TRX-GRX-lik 66.6 13 0.00027 28.2 4.6 41 40-83 10-50 (89)
23 KOG2501 Thioredoxin, nucleored 65.7 3.4 7.3E-05 35.3 1.4 61 41-103 32-94 (157)
24 TIGR02189 GlrX-like_plant Glut 65.4 12 0.00027 28.8 4.4 49 147-201 25-73 (99)
25 PF13728 TraF: F plasmid trans 61.2 7.8 0.00017 34.3 2.9 40 40-85 118-157 (215)
26 cd03022 DsbA_HCCA_Iso DsbA fam 59.6 14 0.0003 30.7 4.1 35 46-84 1-35 (192)
27 cd02066 GRX_family Glutaredoxi 57.4 8.5 0.00018 26.0 2.0 16 45-60 1-16 (72)
28 PF07172 GRP: Glycine rich pro 54.3 8.5 0.00018 30.1 1.7 20 1-20 1-20 (95)
29 PRK13703 conjugal pilus assemb 53.4 10 0.00023 34.6 2.4 38 42-85 143-180 (248)
30 KOG1752 Glutaredoxin and relat 53.3 18 0.00038 28.7 3.4 33 165-202 48-80 (104)
31 PF13905 Thioredoxin_8: Thiore 52.7 48 0.001 24.1 5.6 42 42-85 1-44 (95)
32 TIGR02738 TrbB type-F conjugat 52.4 24 0.00052 29.6 4.3 20 42-61 50-69 (153)
33 TIGR02200 GlrX_actino Glutared 52.0 9.9 0.00021 26.5 1.7 16 45-60 1-16 (77)
34 cd03419 GRX_GRXh_1_2_like Glut 51.7 12 0.00026 26.6 2.1 16 45-60 1-16 (82)
35 PF13098 Thioredoxin_2: Thiore 48.7 44 0.00094 25.1 5.0 27 40-67 3-29 (112)
36 COG4856 Uncharacterized protei 47.9 14 0.00031 35.8 2.5 45 5-53 12-61 (403)
37 TIGR02180 GRX_euk Glutaredoxin 47.1 13 0.00029 26.4 1.8 15 46-60 1-15 (84)
38 TIGR02739 TraF type-F conjugat 46.5 16 0.00034 33.6 2.4 37 42-84 150-186 (256)
39 cd03027 GRX_DEP Glutaredoxin ( 45.0 17 0.00037 25.7 2.0 14 188-201 50-63 (73)
40 TIGR02190 GlrX-dom Glutaredoxi 44.2 16 0.00035 26.5 1.8 17 44-60 8-24 (79)
41 cd03418 GRX_GRXb_1_3_like Glut 44.0 14 0.00031 25.8 1.5 13 189-201 51-63 (75)
42 PF00462 Glutaredoxin: Glutare 43.7 19 0.00042 24.4 2.1 15 46-60 1-15 (60)
43 cd02949 TRX_NTR TRX domain, no 43.6 59 0.0013 24.1 4.9 35 39-75 10-44 (97)
44 cd03021 DsbA_GSTK DsbA family, 42.4 45 0.00097 28.7 4.6 36 45-84 2-37 (209)
45 PHA03050 glutaredoxin; Provisi 41.8 32 0.00069 27.1 3.3 28 169-201 54-81 (108)
46 PHA03050 glutaredoxin; Provisi 40.5 18 0.00038 28.6 1.6 16 45-60 14-29 (108)
47 PRK11200 grxA glutaredoxin 1; 39.7 22 0.00048 26.0 2.0 16 45-60 2-17 (85)
48 TIGR02196 GlrX_YruB Glutaredox 39.4 17 0.00037 24.7 1.2 15 46-60 2-16 (74)
49 TIGR02189 GlrX-like_plant Glut 39.2 19 0.00041 27.7 1.6 17 45-61 9-25 (99)
50 PRK13728 conjugal transfer pro 39.1 28 0.0006 30.3 2.7 33 46-84 73-105 (181)
51 PRK03147 thiol-disulfide oxido 38.4 1.4E+02 0.0031 24.1 6.9 33 41-75 60-92 (173)
52 cd02976 NrdH NrdH-redoxin (Nrd 38.3 23 0.00051 23.9 1.8 16 45-60 1-16 (73)
53 cd02962 TMX2 TMX2 family; comp 37.3 1.1E+02 0.0025 25.5 6.1 20 41-60 46-65 (152)
54 TIGR02181 GRX_bact Glutaredoxi 36.6 20 0.00044 25.6 1.3 15 187-201 47-61 (79)
55 TIGR01295 PedC_BrcD bacterioci 36.0 31 0.00067 27.5 2.4 19 42-60 23-41 (122)
56 cd02995 PDI_a_PDI_a'_C PDIa fa 35.4 76 0.0016 23.1 4.4 40 40-81 16-55 (104)
57 COG0695 GrxC Glutaredoxin and 35.1 24 0.00053 26.1 1.5 16 186-201 50-65 (80)
58 cd03029 GRX_hybridPRX5 Glutare 34.0 31 0.00068 24.2 1.9 16 45-60 2-17 (72)
59 cd02965 HyaE HyaE family; HyaE 33.5 82 0.0018 25.2 4.4 21 40-60 25-47 (111)
60 TIGR02183 GRXA Glutaredoxin, G 33.2 28 0.0006 25.8 1.6 15 188-202 56-70 (86)
61 PRK10638 glutaredoxin 3; Provi 32.5 39 0.00085 24.6 2.3 16 45-60 3-18 (83)
62 PF11287 DUF3088: Protein of u 32.1 24 0.00052 28.6 1.1 33 53-88 23-55 (112)
63 KOG3425 Uncharacterized conser 31.6 65 0.0014 26.6 3.6 35 51-87 42-76 (128)
64 cd01659 TRX_superfamily Thiore 30.9 94 0.002 18.9 3.7 16 46-61 1-16 (69)
65 PF13192 Thioredoxin_3: Thiore 30.3 1.5E+02 0.0033 21.1 5.1 35 44-83 1-35 (76)
66 PF05984 Cytomega_UL20A: Cytom 28.8 59 0.0013 25.2 2.7 29 1-29 1-29 (100)
67 cd03012 TlpA_like_DipZ_like Tl 28.8 1.2E+02 0.0026 23.5 4.7 39 41-82 22-60 (126)
68 PTZ00443 Thioredoxin domain-co 28.7 3E+02 0.0066 24.5 7.7 20 42-61 52-71 (224)
69 PF00085 Thioredoxin: Thioredo 28.4 93 0.002 22.4 3.8 34 40-75 15-48 (103)
70 cd03028 GRX_PICOT_like Glutare 28.2 1E+02 0.0022 22.9 4.0 49 145-202 28-76 (90)
71 TIGR01126 pdi_dom protein disu 27.9 48 0.001 24.0 2.1 21 41-61 12-32 (102)
72 cd02961 PDI_a_family Protein D 26.8 1.7E+02 0.0037 20.5 4.9 27 43-70 16-42 (101)
73 PRK10329 glutaredoxin-like pro 26.0 51 0.0011 24.3 2.0 16 45-60 2-17 (81)
74 TIGR00365 monothiol glutaredox 26.0 1.1E+02 0.0023 23.3 3.8 47 146-201 33-79 (97)
75 cd02953 DsbDgamma DsbD gamma f 25.2 1.1E+02 0.0023 22.8 3.7 22 41-62 10-31 (104)
76 COG4545 Glutaredoxin-related p 24.3 46 0.001 25.4 1.4 16 47-62 5-20 (85)
77 cd03040 GST_N_mPGES2 GST_N fam 23.7 53 0.0012 23.1 1.6 15 46-60 2-16 (77)
78 PRK09381 trxA thioredoxin; Pro 23.6 2.2E+02 0.0047 21.2 5.1 22 40-61 19-40 (109)
79 TIGR02194 GlrX_NrdH Glutaredox 23.4 46 0.001 23.5 1.2 15 46-60 1-15 (72)
80 cd03002 PDI_a_MPD1_like PDI fa 23.3 1.6E+02 0.0034 21.7 4.3 23 39-61 15-37 (109)
81 PF07172 GRP: Glycine rich pro 23.2 37 0.0008 26.5 0.7 15 9-23 5-19 (95)
82 TIGR01068 thioredoxin thioredo 23.2 1.8E+02 0.0039 20.7 4.5 21 41-61 13-33 (101)
83 PTZ00051 thioredoxin; Provisio 23.0 2.2E+02 0.0048 20.5 5.0 28 40-68 16-43 (98)
84 PRK15412 thiol:disulfide inter 22.5 2.7E+02 0.0059 23.4 6.1 22 41-62 67-88 (185)
85 cd03001 PDI_a_P5 PDIa family, 22.0 2.1E+02 0.0046 20.7 4.7 22 40-61 16-37 (103)
86 cd02950 TxlA TRX-like protein 21.9 2.1E+02 0.0045 23.2 5.0 22 40-61 18-39 (142)
87 cd02975 PfPDO_like_N Pyrococcu 21.3 2E+02 0.0043 22.3 4.6 19 42-60 21-40 (113)
88 cd02969 PRX_like1 Peroxiredoxi 20.5 2E+02 0.0043 23.5 4.7 40 41-83 24-63 (171)
89 PF15299 ALS2CR8: Amyotrophic 20.5 35 0.00076 30.4 0.1 24 76-103 21-44 (225)
90 cd02996 PDI_a_ERp44 PDIa famil 20.2 2.7E+02 0.0058 20.8 5.0 20 42-61 18-37 (108)
91 cd02964 TryX_like_family Trypa 20.1 2E+02 0.0044 22.4 4.5 41 40-82 15-56 (132)
No 1
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-52 Score=366.78 Aligned_cols=180 Identities=36% Similarity=0.710 Sum_probs=162.5
Q ss_pred CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhccc
Q 043871 40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWP 119 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~ 119 (255)
+.+||+|+||||||||||++||++||.|+|.+.+.+++||++||||||+..++.++|+||||+.||.+|++|+|+|++++
T Consensus 37 ~~~~v~ItlyyEaLCPdc~~Fi~~qL~p~~~~~~~~~idl~lvPfGna~~~~~~~~~~CqHG~~EC~lN~LqaCvI~~l~ 116 (220)
T KOG3160|consen 37 QAPKVNITLYYEALCPDCSKFIRNQLYPFFDNLLPSILDLTLVPFGNAQCRNDGGTFTCQHGEEECKLNKLQACVIDTLP 116 (220)
T ss_pred cCCeeEEEEEEEecCccHHHHHHHHHHHHHhhcccceeEEEEEccCCceeecCceEEEecCCHHHHhhhHHHHHHHHhhh
Confidence 55699999999999999999999999999986578999999999999976543389999999999999999999999999
Q ss_pred cccchhhhhhhccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCee
Q 043871 120 EQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDA 199 (255)
Q Consensus 120 ~~~~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~ 199 (255)
++..+++||.||+. . ...+.+..|+++.+.++..|++|++|++|.+|+.++|.+|..+.|+|.|||||+|||++
T Consensus 117 ~~~~~l~~i~C~~~--~----~~~~~~~~C~~~~~~~~~~i~~Ca~s~~g~~L~~~~~~~T~~~~p~~~~VPwi~vNg~~ 190 (220)
T KOG3160|consen 117 DQSDQLPFIRCIQG--K----QKLSEAEDCLEKYGLNEKKIRECANSRLGAKLLLKYAQETAALAPPHPWVPWILVNGQP 190 (220)
T ss_pred chHhhhceehhhhc--c----cchhHHHHHHhhcCCCHHHHHHHhcCchHHHHHHHHHHhhcccCCCCCCcCeEEECCcc
Confidence 99999999999995 1 23445667999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhcHHHHHHHhccCCC-CCCCCC
Q 043871 200 VGPDYGNFVKYVCEAYSGSH-VPEACK 225 (255)
Q Consensus 200 ~~~~~~nL~~~IC~~y~g~~-~P~~C~ 225 (255)
..+++.||.+.+|.+|++.. +|..|.
T Consensus 191 ~~~~~~~l~~~~C~~~~~~~~~~~~~~ 217 (220)
T KOG3160|consen 191 LQDAEQDLVTLLCEAYKGKKQKPLKCQ 217 (220)
T ss_pred hHHHHHHHHHHHHHHHhhccccCcccc
Confidence 99999999999999999843 354444
No 2
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=100.00 E-value=1.7e-37 Score=246.71 Aligned_cols=106 Identities=39% Similarity=0.770 Sum_probs=90.7
Q ss_pred eEEEEEEEeCChhHHHHHHHhhHHHHH-hhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhcccccc
Q 043871 44 VNLSVYYESLSDTGAEFITHDLGKVFE-KDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQL 122 (255)
Q Consensus 44 V~V~vYyESlCPd~~~Fi~~qL~P~~~-~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~~~~ 122 (255)
|+|+|||||+||||++||++||.|+|. +++.|+|||+|||||||+....+++|+|||||.||+||++|+|+++++++..
T Consensus 1 V~v~vyyESlCPd~~~fi~~~L~p~~~~~~~~~~~~l~lvP~G~a~~~~~~~~~~CqHG~~EC~gN~~q~C~l~~~~~~~ 80 (108)
T PF03227_consen 1 VNVEVYYESLCPDCRRFITNQLFPVWTYEKLSDIMNLTLVPFGNAKVSSSGNEFTCQHGPDECYGNKLQACALKHLPDTN 80 (108)
T ss_pred CEEEEEEEecCHhHHHHHHHHHHHHHHHhhccceEEEEEEEEeccEEecCCceeecCCcHHHHHcCHHHHhHHHhcCChh
Confidence 799999999999999999999999773 3799999999999999965443346999999999999999999999999988
Q ss_pred chhhhhhhccccCCCCCCchhhHHHHhHhhcCC
Q 043871 123 LHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKL 155 (255)
Q Consensus 123 ~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl 155 (255)
.+|+||+||++.. +....+. |+++.+.
T Consensus 81 ~~~~~i~Cm~~~~-----~~~~~~~-Ca~~~~~ 107 (108)
T PF03227_consen 81 AALPFIACMESSQ-----DFPKAIK-CAKKYGI 107 (108)
T ss_pred hhcCEEEEEcCCC-----CCchhhh-hHHhcCC
Confidence 8999999999653 1222333 9998874
No 3
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.47 E-value=5e-06 Score=66.92 Aligned_cols=139 Identities=11% Similarity=0.042 Sum_probs=89.7
Q ss_pred CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhccc
Q 043871 40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWP 119 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~ 119 (255)
...++.|.+|+.-.||.|++|- ..|.+.+. ...+ +.+.++||--. ..... ..-..-.|+.. .
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~-~~l~~~~~-~~~~-~~~~~~~~p~~---~~~~~----------~~~~~~~~~~~--~ 64 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLA-PELEKLLK-EDPD-VRVVFKEFPIL---GESSV----------LAARVALAVWK--N 64 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhh-HHHHHHHH-HCCC-ceEEEEeCCcc---CcchH----------HHHHHHHHHHH--h
Confidence 3478999999999999999995 45666554 3444 66676666321 01100 11111123322 1
Q ss_pred cccchhhhhhhccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCee
Q 043871 120 EQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDA 199 (255)
Q Consensus 120 ~~~~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~ 199 (255)
++...++|..=+...... .........+.+.|++.+.+.+|.++.+.++.+.+..+....+ ++..+||++|||+.
T Consensus 65 ~~~~~~~~~~~lf~~~~~---~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gi~gtPt~~v~g~~ 139 (154)
T cd03023 65 GPGKYLEFHNALMATRGR---LNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARAL--GITGTPAFIIGDTV 139 (154)
T ss_pred ChhHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHc--CCCcCCeEEECCEE
Confidence 233455554433322211 1233466788999999999999999988888888888888776 68999999999987
Q ss_pred cC
Q 043871 200 VG 201 (255)
Q Consensus 200 ~~ 201 (255)
..
T Consensus 140 ~~ 141 (154)
T cd03023 140 IP 141 (154)
T ss_pred ec
Confidence 54
No 4
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=98.39 E-value=3.2e-06 Score=70.34 Aligned_cols=137 Identities=13% Similarity=0.025 Sum_probs=91.0
Q ss_pred CCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhcccc
Q 043871 41 DEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPE 120 (255)
Q Consensus 41 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~~ 120 (255)
..+|.|..|+.-.||.|++|- ..+.+.+. +..+.+.|+++|+..... .+. ...+...++.. .+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~---~~~----------~aa~a~~aa~~-~~- 76 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFE-PILEAWVK-KLPKDVKFEKVPVVFGGG---EGE----------PLARAFYAAEA-LG- 76 (178)
T ss_pred CCCcEEEEEECCCCcchhhhh-HHHHHHHH-hCCCCceEEEcCCccccc---cch----------HHHHHHHHHHH-cC-
Confidence 678999999999999999995 55788776 467789999999765421 100 01111111111 11
Q ss_pred ccchhhhhh----hccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEEC
Q 043871 121 QLLHFTFIK----CLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLN 196 (255)
Q Consensus 121 ~~~~l~fI~----Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN 196 (255)
....|.. -........ .....+...+.+.|++.+.+.+|.++.+-++.+.+..+....+ ++..+||++||
T Consensus 77 --~~~~~~~~lf~~~~~~~~~~--~~~~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~--gi~gTPt~iIn 150 (178)
T cd03019 77 --LEDKLHAALFEAIHEKRKRL--LDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKY--KITGVPAFVVN 150 (178)
T ss_pred --cHhhhhHHHHHHHHHhCCCC--CCHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc--CCCCCCeEEEC
Confidence 1112211 111111111 2245678999999999999999999887777777777777665 68999999999
Q ss_pred Ceec
Q 043871 197 GDAV 200 (255)
Q Consensus 197 G~~~ 200 (255)
|+..
T Consensus 151 G~~~ 154 (178)
T cd03019 151 GKYV 154 (178)
T ss_pred CEEE
Confidence 9975
No 5
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=98.18 E-value=1.1e-05 Score=65.96 Aligned_cols=147 Identities=14% Similarity=0.137 Sum_probs=93.3
Q ss_pred CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhc--cCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhc
Q 043871 40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDL--TSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKA 117 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l--~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~ 117 (255)
...++.|.+|..-.||.|++|... +.++++ .+ .+.|.|.++|+-... .....+-.+..|+...
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~-~~~~~~-~~i~~~~v~~~~~~~~~~~-------------~~~~~a~~~~~~~~~~ 74 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEE-LEKLLK-KYIDPGKVKFVFRPVPLDK-------------HSSLRAAMAAECVADQ 74 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHH-HHHHHH-HHTTTTTEEEEEEESSSSH-------------HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEECCCCHhHHHHHHH-Hhhhhh-hccCCCceEEEEEEccccc-------------hhHHHHHHHHHHHHHH
Confidence 566899999999999999999654 557776 35 578899998872221 1145555666666655
Q ss_pred cccccchhhhhhhccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECC
Q 043871 118 WPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNG 197 (255)
Q Consensus 118 ~~~~~~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG 197 (255)
- +.++.+..-+........ .. .... .+.+.+.+.+.+|+++..-...+.+..+.+... +++.+|+++|||
T Consensus 75 ~---~~~~~~~~~~~~~~~~~~-~~-~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~tPt~~inG 144 (162)
T PF13462_consen 75 G---KYFWFFHELLFSQQENFE-NK-KDIA---ANAGGSNEQFNKCLNSDEIKAQLEADSQLARQL--GITGTPTFFING 144 (162)
T ss_dssp T---HHHHHHHHHHHHHCHSTS-SH-HHHH---HHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHH--T-SSSSEEEETT
T ss_pred h---HHHHHHHHHHHHhhhccc-hh-HHHH---HHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHc--CCccccEEEECC
Confidence 2 344555545543222121 11 1111 234445778999998887677766666666655 689999999999
Q ss_pred eecCc--chhcHHHHH
Q 043871 198 DAVGP--DYGNFVKYV 211 (255)
Q Consensus 198 ~~~~~--~~~nL~~~I 211 (255)
+.+.. ..++|...|
T Consensus 145 ~~~~~~~~~~~l~~~I 160 (162)
T PF13462_consen 145 KYVVGPYTIEELKELI 160 (162)
T ss_dssp CEEETTTSHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHH
Confidence 98753 345555544
No 6
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=97.54 E-value=0.0011 Score=56.38 Aligned_cols=151 Identities=14% Similarity=0.096 Sum_probs=93.4
Q ss_pred EEEEEEeCChhHHHHHHHhhHHHHHhhcc--CceEEEEEeeeeceeecCCc----ceee-cCChh---------------
Q 043871 46 LSVYYESLSDTGAEFITHDLGKVFEKDLT--SIVNLRLIPWGKAQIVEPNE----TIVC-EHGED--------------- 103 (255)
Q Consensus 46 V~vYyESlCPd~~~Fi~~qL~P~~~~~l~--d~vdl~lVP~GnA~~~~~~~----~f~C-QHGp~--------------- 103 (255)
|++|+.-.||+|--.. .+|..+.. .+. +-++|++.||+-.......+ .... ++|..
T Consensus 1 I~~~~D~~cP~cyl~~-~~l~~~~~-~~~~~~~~~v~~~p~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~ 78 (201)
T cd03024 1 IDIWSDVVCPWCYIGK-RRLEKALA-ELGDEVDVEIEWRPFELNPDMPPEGEDRREYLARKYGSTAEQAAAMRRVEAAAA 78 (201)
T ss_pred CeEEecCcCccHHHHH-HHHHHHHH-hCCCCCceEEEEeeeeeCCCCCCCCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 5799999999997663 45776665 353 25999999996442111111 0100 11110
Q ss_pred ----------hhhcchhhhhhhhcc-ccccchhhhhhhccccCCCCCC--chhhHHHHhHhhcCCChhhhhhhhcCchhH
Q 043871 104 ----------ECYFNVIHACAIKAW-PEQLLHFTFIKCLEETSWGPTL--DKEKVWRTCCQNLKLSPNLIKDCYDNGTGR 170 (255)
Q Consensus 104 ----------EC~gN~iqaCai~~~-~~~~~~l~fI~Cm~~~~~~~~~--~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~ 170 (255)
.-..|...+|..-.. .......+|..=+....+.-.+ .........++..|+|.+.+.++.++.+.+
T Consensus 79 ~~gi~~~~~~~~~~~s~~a~~~~~~a~~~~~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~ 158 (201)
T cd03024 79 AEGLEFDFDRVRPPNTFDAHRLIHLAKEQGKQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEYA 158 (201)
T ss_pred HcCCcccCCCCccCCcHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCcccc
Confidence 001244444443322 1223455666555432111000 234456788999999999999999999888
Q ss_pred HHHHHHHHHhhhcCCCCceeeEEEECCeec
Q 043871 171 WLELIYAAETERLKPPIQFVPWLTLNGDAV 200 (255)
Q Consensus 171 ~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~ 200 (255)
+.+.+..+....+ ++.-+||++|||++.
T Consensus 159 ~~~~~~~~~a~~~--gv~G~Pt~vv~g~~~ 186 (201)
T cd03024 159 DEVRADEARARQL--GISGVPFFVFNGKYA 186 (201)
T ss_pred hHHHHHHHHHHHC--CCCcCCEEEECCeEe
Confidence 8888888877765 689999999999853
No 7
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.34 E-value=0.0036 Score=54.62 Aligned_cols=138 Identities=8% Similarity=-0.031 Sum_probs=82.9
Q ss_pred CceEEEEEEEeCChhHHHHHHHhh--HHHHHhhccCceEEEEEeeeeceeecCC--cceeecCChhhhhcchhhhhhhhc
Q 043871 42 EKVNLSVYYESLSDTGAEFITHDL--GKVFEKDLTSIVNLRLIPWGKAQIVEPN--ETIVCEHGEDECYFNVIHACAIKA 117 (255)
Q Consensus 42 ~kV~V~vYyESlCPd~~~Fi~~qL--~P~~~~~l~d~vdl~lVP~GnA~~~~~~--~~f~CQHGp~EC~gN~iqaCai~~ 117 (255)
.+..|.-|+-=.||.|.+|-. .| .+.+.+.+.+-+.+..+|+--....... .-+. -.+|.+. .+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~-~l~~~~~~~~~~~~~v~~~~~~~~f~~~~~~~~~~a~~----~a~~~~~------~~k 105 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEE-VYHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAWA----VAMALGV------EDK 105 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcc-cccchHHHHHhCCCCCeEEEecccccchhhHHHHHHHH----HHHHhCc------HHH
Confidence 467899999999999999953 22 3666656666667766654211000000 0000 0112111 000
Q ss_pred cccccchhhhhhhccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECC
Q 043871 118 WPEQLLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNG 197 (255)
Q Consensus 118 ~~~~~~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG 197 (255)
.. ...+..+ +.. . .. ........-+.+.|+|.+.+.+|.++..-...+.+..+.+..+ +++-+|+++|||
T Consensus 106 ~~--~~lf~~i--~~~-~-~~--~~~~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~--gI~gtPtfiInG 175 (207)
T PRK10954 106 VT--PPLFEGV--QKT-Q-TI--QSAADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL--QLRGVPAMFVNG 175 (207)
T ss_pred HH--HHHHHHH--Hcc-C-CC--CCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCCCCEEEECC
Confidence 10 1122222 221 1 11 2234566778899999999999999987777777777777665 689999999999
Q ss_pred eec
Q 043871 198 DAV 200 (255)
Q Consensus 198 ~~~ 200 (255)
++.
T Consensus 176 ky~ 178 (207)
T PRK10954 176 KYM 178 (207)
T ss_pred EEE
Confidence 985
No 8
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=97.27 E-value=0.0021 Score=54.26 Aligned_cols=150 Identities=14% Similarity=0.051 Sum_probs=91.4
Q ss_pred eEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCC-------------------cceeecCChhh
Q 043871 44 VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPN-------------------ETIVCEHGEDE 104 (255)
Q Consensus 44 V~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~-------------------~~f~CQHGp~E 104 (255)
++|.+|+.-+||+|-... ..|..+.+ .+...++|++.+++=....... .+..-..++.+
T Consensus 1 ~~i~~~~D~~cp~c~~~~-~~l~~l~~-~~~~~~~v~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 78 (193)
T cd03025 1 LELYYFIDPLCGWCYGFE-PLLEKLKE-EYGGGIEVELHLGGLLPGNNARQITKQWRIYVHWHKARIALTGQPFGEDYLE 78 (193)
T ss_pred CeEEEEECCCCchhhCch-HHHHHHHH-HhCCCceEEEEeccccCCCCCCCcchHHHHHHhHHHHHHHhcCCccCchhHh
Confidence 468999999999996653 34555544 4544588888887644211100 00111111110
Q ss_pred ---hhcchhhhhhhhcc---ccccchhhhhhhcccc----CCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHH
Q 043871 105 ---CYFNVIHACAIKAW---PEQLLHFTFIKCLEET----SWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLEL 174 (255)
Q Consensus 105 ---C~gN~iqaCai~~~---~~~~~~l~fI~Cm~~~----~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~ 174 (255)
--.|...++..-.. ........|..-+... +.++ +........+.+.|+|.+.+.++.++.+.++.+.
T Consensus 79 ~~~~~~~s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i--~~~~~l~~ia~~~Gld~~~~~~~~~s~~~~~~l~ 156 (193)
T cd03025 79 LLLFDLDSAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDL--ADTEVLRELAIELGLDVEEFLEDFQSDEAKQAIQ 156 (193)
T ss_pred cccCCCCchHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHH
Confidence 00123333322211 1223556676666432 2222 2344678899999999999999999999999999
Q ss_pred HHHHHhhhcCCCCceeeEEEECCee
Q 043871 175 IYAAETERLKPPIQFVPWLTLNGDA 199 (255)
Q Consensus 175 ~~~~~T~~l~P~~~~VPwI~iNG~~ 199 (255)
+..+....+ ++.-+||++|++..
T Consensus 157 ~~~~~a~~~--gv~g~Ptfvv~~~~ 179 (193)
T cd03025 157 EDQKLAREL--GINGFPTLVLEDDN 179 (193)
T ss_pred HHHHHHHHc--CCCccCEEEEEeCC
Confidence 888888776 57999999997653
No 9
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.94 E-value=0.0039 Score=53.38 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=83.6
Q ss_pred EEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCC-cceeecCChh--hhhcchhhhhh---hhccccc
Q 043871 48 VYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPN-ETIVCEHGED--ECYFNVIHACA---IKAWPEQ 121 (255)
Q Consensus 48 vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~-~~f~CQHGp~--EC~gN~iqaCa---i~~~~~~ 121 (255)
+|+.-+|+.|-.+ ...|..+.. ++...+++++||.|++...+.. ....+.+..- +=......+|. -..+...
T Consensus 2 ~F~dPlc~~C~~~-E~~l~kl~~-~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~a~la~kAA~~qg~ 79 (176)
T PF13743_consen 2 LFVDPLCSWCWGF-EPELRKLKE-EYGNKIEFRFIPGGLMPDINDFMPRMPINGDFWRNEPRSSSYPACLAYKAAQLQGK 79 (176)
T ss_dssp EEE-TT-HHHHHH-HHHHHHHHH-HS-TTEEEEEEE--SS-S--SB--H----TTHHHS--BS--HHHHHHHHHHHTTT-
T ss_pred eeeCCCChHHHHh-HHHHHHHHH-HcCCcEEEEEEEccchHHHHHHHHhcCCCHHHhcCCCCCCchHHHHHHHHHHHhCh
Confidence 5777899999777 233444444 6889999999999999543211 0112222211 11233444442 1112345
Q ss_pred cchhhhhhhccccC----CCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECC
Q 043871 122 LLHFTFIKCLEETS----WGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNG 197 (255)
Q Consensus 122 ~~~l~fI~Cm~~~~----~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG 197 (255)
+....|+.-|.+.. .++ +..+....||++.|+|.+...+=.+|+..++.+.+--+.++.+ +++-.|+++|-+
T Consensus 80 k~~~~fL~~lQ~a~~~~~~~~--s~~~~l~~iA~~~gLD~~~F~~d~~S~~~~~~~~~D~~la~~m--~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 80 KKARRFLRALQEALFLEGKNY--SDEELLLEIAEELGLDVEMFKEDLHSDEAKQAFQEDQQLAREM--GITGFPTLVIFN 155 (176)
T ss_dssp H--HHHHHHHHHHHHTS---T--TSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHT--T-SSSSEEEEE-
T ss_pred hhHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhCCCHHHHHHHHhChHHHHHHHHHHHHHHHc--CCCCCCEEEEEe
Confidence 66788888886432 222 2346789999999999999888888999999999988889888 589999999855
No 10
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=96.75 E-value=0.0081 Score=50.43 Aligned_cols=145 Identities=15% Similarity=0.070 Sum_probs=84.7
Q ss_pred EEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeec-CCc----c--------------------eeec
Q 043871 45 NLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVE-PNE----T--------------------IVCE 99 (255)
Q Consensus 45 ~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~-~~~----~--------------------f~CQ 99 (255)
+|++|+.-.||.|-.+.. .|..+.. ...+ ++|++.||.-..... ..+ . +.-.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~-~l~~l~~-~~~~-~~i~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gi~~~ 77 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASP-RLRKLRA-EYPD-VEIEWRPFPLRPDMRRSGGAPPAEDPAKAEYMFQDLERWARRYGIPFN 77 (193)
T ss_dssp EEEEEEBTTBHHHHHHHH-HHHHHHH-HHTT-CEEEEEEESSSTHHHHCT-SCGCGSHHHHHHHHHHHHHHHHHHT--TB
T ss_pred CEEEEEeCCCHHHHHHHH-HHHHHHH-HhcC-CcEEEeccccccccccCCCCCcccChhHHHHHHHHHHHHHHHhcCccc
Confidence 589999999999988753 4555554 3434 999999996331100 000 0 0000
Q ss_pred CChhhhhcchhhhhhhhcc-ccccchhh-----hhhhccccCCCCCCchhhHHHHhHhhcCCChhhhhhhhcCchhHHHH
Q 043871 100 HGEDECYFNVIHACAIKAW-PEQLLHFT-----FIKCLEETSWGPTLDKEKVWRTCCQNLKLSPNLIKDCYDNGTGRWLE 173 (255)
Q Consensus 100 HGp~EC~gN~iqaCai~~~-~~~~~~l~-----fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll 173 (255)
..+.. .+|...++.+-.. ........ |-....+ +.++ +..+.....+.+.|+|.+.+.+-.++..++..+
T Consensus 78 ~~~~~-~~~s~~a~~~~~~a~~~~~~~~~~~al~~a~~~~-~~~i--~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~ 153 (193)
T PF01323_consen 78 FPPPF-PGNSRPAHRAAYAAQEQGKADAFADALFRAYFVE-GRDI--SDPDVLAEIAEEAGLDPDEFDAALDSPEVKAAL 153 (193)
T ss_dssp TSSTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-ST-T--SSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHH
T ss_pred CCchh-hhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHhc-ccCC--CCHHHHHHHHHHcCCcHHHHHHHhcchHHHHHH
Confidence 00000 0122333222221 11111111 1122222 2233 334567888999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCceeeEEEECCe
Q 043871 174 LIYAAETERLKPPIQFVPWLTLNGD 198 (255)
Q Consensus 174 ~~~~~~T~~l~P~~~~VPwI~iNG~ 198 (255)
.+..+....+ ++.-|||++|||+
T Consensus 154 ~~~~~~a~~~--gv~GvP~~vv~g~ 176 (193)
T PF01323_consen 154 EEDTAEARQL--GVFGVPTFVVNGK 176 (193)
T ss_dssp HHHHHHHHHT--TCSSSSEEEETTT
T ss_pred HHHHHHHHHc--CCcccCEEEECCE
Confidence 9888888776 6899999999999
No 11
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.25 E-value=0.036 Score=49.81 Aligned_cols=170 Identities=16% Similarity=0.152 Sum_probs=104.6
Q ss_pred CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceE--EEEEeeeeceeecCCccee------ecCC----------
Q 043871 40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVN--LRLIPWGKAQIVEPNETIV------CEHG---------- 101 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vd--l~lVP~GnA~~~~~~~~f~------CQHG---------- 101 (255)
+..+++|+||..=.||.|--. ..-|..+.. .+.+.++ +.+.||=-.-.. ...+.. =.-|
T Consensus 2 ~~~~i~I~v~sD~vCPwC~ig-~~rL~ka~~-~~~~~~~v~i~w~pf~l~p~~-~~~g~~~~~~l~~k~g~~~~~~~~~~ 78 (225)
T COG2761 2 NPMKIEIDVFSDVVCPWCYIG-KRRLEKALA-EYPQEVRVEIRWRPFELDPDL-PPEGLDRKEYLAQKYGISEEQKAAHA 78 (225)
T ss_pred CCceEEEEEEeCCcCchhhcC-HHHHHHHHH-hcCcceeEEEEecccccCCCC-CcccccHHHHHHHHhCccHHHHHHHH
Confidence 467899999999999999433 334555554 4665444 445555322100 000000 0001
Q ss_pred -----hhh-----------hhcchhhhhhhhcccc-cc-chhhhhhhccccC----CCCCCchhhHHHHhHhhcCCChhh
Q 043871 102 -----EDE-----------CYFNVIHACAIKAWPE-QL-LHFTFIKCLEETS----WGPTLDKEKVWRTCCQNLKLSPNL 159 (255)
Q Consensus 102 -----p~E-----------C~gN~iqaCai~~~~~-~~-~~l~fI~Cm~~~~----~~~~~~~~~~~~~Ca~~~gl~~~~ 159 (255)
-.| =..|.+.||-+-++-. +. .+..|+.=+.+.. .++ +.......||.+.|+|.+.
T Consensus 79 ~~~~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~eg~nI--~D~dVL~diA~~~GLD~~~ 156 (225)
T COG2761 79 RLEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGKAQDRFLEALFEAYFEEGRNI--GDEDVLADIAEEVGLDREE 156 (225)
T ss_pred HHHHhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCchHHHHHHHHHHHHhccCCCC--CcHHHHHHHHHHhCCCHHH
Confidence 111 2335567776666531 22 4777777775433 233 4567889999999999999
Q ss_pred hhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCeec-Cc--chhcHHHHHHHhcc
Q 043871 160 IKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAV-GP--DYGNFVKYVCEAYS 216 (255)
Q Consensus 160 I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~-~~--~~~nL~~~IC~~y~ 216 (255)
+++=..++...+=+..-.+..+.+ .++-||+.+|+|.+- .- ...-|...|=....
T Consensus 157 ~~~~L~s~~~~~avr~d~~~A~e~--gI~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~~ 214 (225)
T COG2761 157 FKADLASDAAKDAVRQDEAAAQEM--GIRGVPTFVFDGKYAVSGAQPYDVLEDALRQLLA 214 (225)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHC--CCccCceEEEcCcEeecCCCCHHHHHHHHHHHHh
Confidence 999888888887777777777765 799999999977662 21 23345555544443
No 12
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=95.09 E-value=0.052 Score=45.56 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=48.6
Q ss_pred hhHHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCeec
Q 043871 143 EKVWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAV 200 (255)
Q Consensus 143 ~~~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~ 200 (255)
......++.+.|+|.+.+.++.++.+.++.+.+..+....+ ++.-||+++|||+..
T Consensus 123 ~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~--gi~gvPtfvv~g~~~ 178 (192)
T cd03022 123 PAVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIAR--GVFGVPTFVVDGEMF 178 (192)
T ss_pred HHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHc--CCCcCCeEEECCeee
Confidence 34577899999999999999999999888888888877766 689999999999874
No 13
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.75 Score=40.48 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=82.7
Q ss_pred CceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeeceeecCCcceeecCChhhhhcchhhhhhhhccccc
Q 043871 42 EKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQIVEPNETIVCEHGEDECYFNVIHACAIKAWPEQ 121 (255)
Q Consensus 42 ~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~~~~~~~~f~CQHGp~EC~gN~iqaCai~~~~~~ 121 (255)
.+|.|.+|++-.||.|.+.+- .|...+. .-.+ +++.+++|=-.. ...-.|++ +-..-.|+.+.-.
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~-~l~~~~i-~~~~-~~~~~~~~~f~~----~~~~~~~~------a~~~~~~~~~~~~-- 148 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFP-ELKKKYI-DDGK-VRLVLREFPFLD----PACPYCRR------AAQAARCAADQGI-- 148 (244)
T ss_pred CCceEEEEecCcCccHHHHHH-HHHHHhh-hcCC-CceEEEEeecCC----CCcHHHHH------HHHHHHHhccccc--
Confidence 389999999999999955543 2333332 1222 244444442221 11111333 3334445554332
Q ss_pred cchhhhhhhccccCCCCCCchhhHHHHhHhhcCCC---h--hhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEEC
Q 043871 122 LLHFTFIKCLEETSWGPTLDKEKVWRTCCQNLKLS---P--NLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLN 196 (255)
Q Consensus 122 ~~~l~fI~Cm~~~~~~~~~~~~~~~~~Ca~~~gl~---~--~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iN 196 (255)
..++.|..=+..... .....+..|+...... . .....|.+......+..++.+....+ .++..|+++||
T Consensus 149 ~~y~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~--gv~gTPt~~v~ 222 (244)
T COG1651 149 VRYWAFHDALFGSQA----EAWAASILCAKDLAKADLAALDEGKKAKLNQKACDALIAKNYKLAQQL--GVNGTPTFIVN 222 (244)
T ss_pred hhHHHHHHHHhhccc----cchhhhhhhhhhhhhhhHHHHHhhhhhccChHHHHHHHHHHHHHHHhc--CCCcCCeEEEC
Confidence 457888777764331 2344556666543211 1 35666765455667777777666665 58999999999
Q ss_pred CeecCcc--hhcHHHHH
Q 043871 197 GDAVGPD--YGNFVKYV 211 (255)
Q Consensus 197 G~~~~~~--~~nL~~~I 211 (255)
|..+... ...|...|
T Consensus 223 ~~~~~g~~~~~~l~~~i 239 (244)
T COG1651 223 GKLVPGLPDLDELKAII 239 (244)
T ss_pred CeeecCCCCHHHHHHHH
Confidence 9854322 34444443
No 14
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=87.21 E-value=0.94 Score=32.59 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=31.8
Q ss_pred EEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeec
Q 043871 46 LSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKA 87 (255)
Q Consensus 46 V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA 87 (255)
|.+|+.-.||.|..+. .+|.+... ...+.++++++|+.-.
T Consensus 1 i~~f~d~~Cp~C~~~~-~~l~~~~~-~~~~~~~~~~~~~~~~ 40 (98)
T cd02972 1 IVEFFDPLCPYCYLFE-PELEKLLY-ADDGGVRVVYRPFPLL 40 (98)
T ss_pred CeEEECCCCHhHHhhh-HHHHHHHh-hcCCcEEEEEeccccC
Confidence 5689999999999995 45777653 4567899999998766
No 15
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=86.36 E-value=1.5 Score=39.70 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=34.0
Q ss_pred CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeec
Q 043871 40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKA 87 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA 87 (255)
.+.+..|.||..-.||+|++|-. .+.|..+ . .-|.++++|++--
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~-~l~~~~~--~-g~V~v~~ip~~~l 158 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQ-QARPWVD--S-GKVQLRHILVGII 158 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHH-HHHHHhh--c-CceEEEEEecccc
Confidence 46778999999999999999964 4677654 2 3488899998643
No 16
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=86.28 E-value=9.1 Score=34.17 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=29.8
Q ss_pred CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeec
Q 043871 40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKA 87 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA 87 (255)
.+.++.|.+|..-.||+|+++-. +|....+ .-+.+.+++|...
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~-~l~~~~~----~~v~v~~~~~P~~ 147 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHE-QMKDYNA----LGITVRYLAFPRQ 147 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHH-HHHHHhc----CCeEEEEEeccCC
Confidence 35678899999999999999953 3443321 1267777766543
No 17
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=84.92 E-value=1.6 Score=35.58 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=26.2
Q ss_pred CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeec
Q 043871 40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKA 87 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA 87 (255)
...++++-|+.|+=||||++++= .|..+.+ ....++++++.-...
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP-~l~kiae--~~p~i~~~~i~rd~~ 83 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVP-VLAKIAE--ANPNIEVRIILRDEN 83 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHH-HHHHHHH--H-TTEEEEEE-HHHH
T ss_pred cCCCcEEEEEECCCchhHHHHHH-HHHHHHH--hCCCCeEEEEEecCC
Confidence 45678999999999999999852 2333333 345788988875433
No 18
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=78.16 E-value=4 Score=34.93 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=31.9
Q ss_pred CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeec
Q 043871 40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKA 87 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA 87 (255)
...++.|.+|..-.||+|++|-. .|.+ ..+-+.+.++||.-.
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~-~l~~-----~~~~v~v~~~~~p~~ 116 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEK-ELKP-----NADGVTVRIFPVPIL 116 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHH-HHhh-----ccCceEEEEEEcCcC
Confidence 34789999999999999999953 3444 334588888888654
No 19
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=77.71 E-value=4.7 Score=27.93 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=15.6
Q ss_pred eEEEEEEEeCChhHHHH
Q 043871 44 VNLSVYYESLSDTGAEF 60 (255)
Q Consensus 44 V~V~vYyESlCPd~~~F 60 (255)
|+|.+|+-+-||.|++.
T Consensus 1 ~~v~~f~~~~C~~C~~~ 17 (67)
T cd02973 1 VNIEVFVSPTCPYCPDA 17 (67)
T ss_pred CEEEEEECCCCCCcHHH
Confidence 68999999999999776
No 20
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=75.93 E-value=5.8 Score=28.19 Aligned_cols=25 Identities=8% Similarity=0.054 Sum_probs=19.1
Q ss_pred eEEEEEEEeCChhHHHHHHHhhHHHH
Q 043871 44 VNLSVYYESLSDTGAEFITHDLGKVF 69 (255)
Q Consensus 44 V~V~vYyESlCPd~~~Fi~~qL~P~~ 69 (255)
|+|.+|+-+-||.|+... ..|..+.
T Consensus 1 ~~v~~f~~~~C~~C~~~~-~~l~~l~ 25 (82)
T TIGR00411 1 VKIELFTSPTCPYCPAAK-RVVEEVA 25 (82)
T ss_pred CEEEEEECCCCcchHHHH-HHHHHHH
Confidence 789999999999998873 3344443
No 21
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=67.22 E-value=12 Score=32.36 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=37.8
Q ss_pred HHHHhHhhcCCChhh---hhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECC
Q 043871 145 VWRTCCQNLKLSPNL---IKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNG 197 (255)
Q Consensus 145 ~~~~Ca~~~gl~~~~---I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG 197 (255)
....++.+.|+|++. +.+-..+.++++.+.++.++..++ ++.-||+++||+
T Consensus 134 vL~~~a~~~Gld~~~~~~~l~~~~~~~~~~~l~~~~~~A~~~--Gv~GVP~fvv~~ 187 (209)
T cd03021 134 SISVAADKLGGSAEQAEKLLKAASTPEVKNRLKENTDEALKY--GAFGLPWIVVTN 187 (209)
T ss_pred HHHHHHHHcCCCcccHHHHHHHccCHHHHHHHHHHHHHHHHc--CCCCCCEEEEEc
Confidence 346899999998654 444446777777777777666654 789999999964
No 22
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=66.60 E-value=13 Score=28.19 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=27.0
Q ss_pred CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEe
Q 043871 40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIP 83 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP 83 (255)
=..+|+|.+|+-.-||+|... .++..-+. ...+.+++..+=
T Consensus 10 l~~pv~i~~F~~~~C~~C~~~--~~~~~~l~-~~~~~i~~~~vd 50 (89)
T cd03026 10 LNGPINFETYVSLSCHNCPDV--VQALNLMA-VLNPNIEHEMID 50 (89)
T ss_pred cCCCEEEEEEECCCCCCcHHH--HHHHHHHH-HHCCCceEEEEE
Confidence 457899999999999999865 33444333 233445555544
No 23
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=65.74 E-value=3.4 Score=35.31 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=35.5
Q ss_pred CCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCc-eEEEEEeeeece-eecCCcceeecCChh
Q 043871 41 DEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSI-VNLRLIPWGKAQ-IVEPNETIVCEHGED 103 (255)
Q Consensus 41 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~-vdl~lVP~GnA~-~~~~~~~f~CQHGp~ 103 (255)
..||-.-.|--.-||.||.| +=.|.++|+ .+.+- =.|++|-.-.=+ ..+-+.-+.++||+-
T Consensus 32 ~gKvV~lyFsA~wC~pCR~F-TP~Lk~fYe-~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W 94 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDF-TPILKDFYE-ELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDW 94 (157)
T ss_pred CCcEEEEEEEEEECCchhhC-CchHHHHHH-HHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCe
Confidence 34665555666789999999 677889988 46543 134443321110 000122478888874
No 24
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=65.38 E-value=12 Score=28.79 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=34.2
Q ss_pred HHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCeecC
Q 043871 147 RTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVG 201 (255)
Q Consensus 147 ~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 201 (255)
++-..+.|++++. .+--....+.++..+..+.| +.+.||.|.|||++++
T Consensus 25 k~~L~~~~i~~~~-vdid~~~~~~~~~~~l~~~t-----g~~tvP~Vfi~g~~iG 73 (99)
T TIGR02189 25 KRLLLTLGVNPAV-HEIDKEPAGKDIENALSRLG-----CSPAVPAVFVGGKLVG 73 (99)
T ss_pred HHHHHHcCCCCEE-EEcCCCccHHHHHHHHHHhc-----CCCCcCeEEECCEEEc
Confidence 3445566776642 23334677788888887776 3578999999999975
No 25
>PF13728 TraF: F plasmid transfer operon protein
Probab=61.18 E-value=7.8 Score=34.29 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=30.3
Q ss_pred CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeee
Q 043871 40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWG 85 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~G 85 (255)
-.++.-+-+||+|-||+|+.| .|++. .+.+.-.|+++|+-
T Consensus 118 la~~~gL~~F~~~~C~~C~~~-----~pil~-~~~~~yg~~v~~vs 157 (215)
T PF13728_consen 118 LAQKYGLFFFYRSDCPYCQQQ-----APILQ-QFADKYGFSVIPVS 157 (215)
T ss_pred HhhCeEEEEEEcCCCchhHHH-----HHHHH-HHHHHhCCEEEEEe
Confidence 346788999999999999887 56665 46665677887763
No 26
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=59.57 E-value=14 Score=30.69 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=24.1
Q ss_pred EEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEee
Q 043871 46 LSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPW 84 (255)
Q Consensus 46 V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~ 84 (255)
|++|+.-.||.|--.. ..|..+.. .+. ++|++.||
T Consensus 1 i~~~~D~~cP~cy~~~-~~l~~~~~-~~~--~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAH-ERLPALAA-RHG--ATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHH-HHHHHHHH-HhC--CeeEEeee
Confidence 5799999999995553 33444433 232 77888888
No 27
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=57.40 E-value=8.5 Score=25.98 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=13.4
Q ss_pred EEEEEEEeCChhHHHH
Q 043871 45 NLSVYYESLSDTGAEF 60 (255)
Q Consensus 45 ~V~vYyESlCPd~~~F 60 (255)
+|.+|....||+|++.
T Consensus 1 ~v~ly~~~~Cp~C~~~ 16 (72)
T cd02066 1 KVVVFSKSTCPYCKRA 16 (72)
T ss_pred CEEEEECCCCHHHHHH
Confidence 4778999999999876
No 28
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=54.34 E-value=8.5 Score=30.07 Aligned_cols=20 Identities=20% Similarity=0.046 Sum_probs=8.5
Q ss_pred CCCCCchhHHHHHHHHHHHH
Q 043871 1 MTFHQLPSSFLSTALLFMFI 20 (255)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (255)
|.+..+.++.|.+++|+++.
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 66555443333333333333
No 29
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=53.37 E-value=10 Score=34.56 Aligned_cols=38 Identities=21% Similarity=0.438 Sum_probs=28.8
Q ss_pred CceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEeee
Q 043871 42 EKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWG 85 (255)
Q Consensus 42 ~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~G 85 (255)
+.--+-+||+|-||+|..| .|++. .+.+.-.|.++|+-
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~-----aPil~-~fa~~yg~~v~~VS 180 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQL-----AQVIN-DFRDTYGLSVIPVS 180 (248)
T ss_pred hcceEEEEECCCCchhHHH-----HHHHH-HHHHHhCCeEEEEe
Confidence 3467889999999999877 56665 46666777888863
No 30
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=53.35 E-value=18 Score=28.71 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.6
Q ss_pred cCchhHHHHHHHHHHhhhcCCCCceeeEEEECCeecCc
Q 043871 165 DNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGP 202 (255)
Q Consensus 165 ~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~~ 202 (255)
...+|.+++....+.|. -+-||.|.|||++++-
T Consensus 48 ~~~~g~eiq~~l~~~tg-----~~tvP~vFI~Gk~iGG 80 (104)
T KOG1752|consen 48 EDEDGSEIQKALKKLTG-----QRTVPNVFIGGKFIGG 80 (104)
T ss_pred CCCCcHHHHHHHHHhcC-----CCCCCEEEECCEEEcC
Confidence 34788899888887774 3589999999999863
No 31
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=52.71 E-value=48 Score=24.12 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=29.3
Q ss_pred CceEEEEEEEeCChhHHHHHHHhhHHHHHhhcc--CceEEEEEeee
Q 043871 42 EKVNLSVYYESLSDTGAEFITHDLGKVFEKDLT--SIVNLRLIPWG 85 (255)
Q Consensus 42 ~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~--d~vdl~lVP~G 85 (255)
.|+.+-.|+-+-||.|+.++ ..|..+++ .+. +-++|=.|...
T Consensus 1 gK~~ll~fwa~~c~~c~~~~-~~l~~l~~-~~~~~~~v~~v~Vs~d 44 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKEL-PKLKELYK-KYKKKDDVEFVFVSLD 44 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHH-HHHHHHHH-HHTTTTTEEEEEEE-S
T ss_pred CCEEEEEEECCCCHHHHHHH-HHHHHHHH-HhCCCCCEEEEEEEeC
Confidence 36778889999999999986 45777776 465 55666665553
No 32
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=52.40 E-value=24 Score=29.57 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=16.4
Q ss_pred CceEEEEEEEeCChhHHHHH
Q 043871 42 EKVNLSVYYESLSDTGAEFI 61 (255)
Q Consensus 42 ~kV~V~vYyESlCPd~~~Fi 61 (255)
....|-.||-|-||.|+..+
T Consensus 50 ~~~~lvnFWAsWCppCr~e~ 69 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFA 69 (153)
T ss_pred CCCEEEEEECCCChhHHHHH
Confidence 33458889999999999984
No 33
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=52.05 E-value=9.9 Score=26.54 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=14.0
Q ss_pred EEEEEEEeCChhHHHH
Q 043871 45 NLSVYYESLSDTGAEF 60 (255)
Q Consensus 45 ~V~vYyESlCPd~~~F 60 (255)
+|.||+-+-||+|++.
T Consensus 1 ~v~ly~~~~C~~C~~~ 16 (77)
T TIGR02200 1 TITVYGTTWCGYCAQL 16 (77)
T ss_pred CEEEEECCCChhHHHH
Confidence 3789999999999885
No 34
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=51.70 E-value=12 Score=26.61 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=13.7
Q ss_pred EEEEEEEeCChhHHHH
Q 043871 45 NLSVYYESLSDTGAEF 60 (255)
Q Consensus 45 ~V~vYyESlCPd~~~F 60 (255)
+|.+|+...||+|...
T Consensus 1 ~v~~y~~~~Cp~C~~~ 16 (82)
T cd03419 1 PVVVFSKSYCPYCKRA 16 (82)
T ss_pred CEEEEEcCCCHHHHHH
Confidence 4789999999999876
No 35
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=48.68 E-value=44 Score=25.12 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=19.1
Q ss_pred CCCceEEEEEEEeCChhHHHHHHHhhHH
Q 043871 40 QDEKVNLSVYYESLSDTGAEFITHDLGK 67 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P 67 (255)
..++-.|-+|+.--||+|+.+-. ++.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~-~~~~ 29 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEK-ELFP 29 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHH-HHHH
T ss_pred CCCCEEEEEEECCCCHHHHHHHH-HHHH
Confidence 45677888899999999999854 4554
No 36
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.88 E-value=14 Score=35.80 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=27.7
Q ss_pred CchhHHHHHHHHHHHHccCCC-CccccCCccCCCcCC----CCceEEEEEEEeC
Q 043871 5 QLPSSFLSTALLFMFIFPHCS-SVEYDGARIFPTVKQ----DEKVNLSVYYESL 53 (255)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~kV~V~vYyESl 53 (255)
|..+.|||+ +||++++...+ .+. .-..+|... -.-|+|++||.+-
T Consensus 12 rIiaff~A~-~Lfl~vn~~n~~N~~---~t~~~~~~t~~~tltdvpvdvlYD~~ 61 (403)
T COG4856 12 RIIAFFFAI-LLFLYVNNNNFNNPI---STIKPTSETYTLTLTDVPVDVLYDSD 61 (403)
T ss_pred HHHHHHHHH-HhheeecccccCCcc---cccccccccccceeeeceeEEEEccc
Confidence 345566777 88888888743 222 223344433 4559999999864
No 37
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=47.07 E-value=13 Score=26.38 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=12.7
Q ss_pred EEEEEEeCChhHHHH
Q 043871 46 LSVYYESLSDTGAEF 60 (255)
Q Consensus 46 V~vYyESlCPd~~~F 60 (255)
|.+|+.+.||+|++.
T Consensus 1 V~~f~~~~Cp~C~~~ 15 (84)
T TIGR02180 1 VVVFSKSYCPYCKKA 15 (84)
T ss_pred CEEEECCCChhHHHH
Confidence 568999999999887
No 38
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=46.47 E-value=16 Score=33.56 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=28.2
Q ss_pred CceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEee
Q 043871 42 EKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPW 84 (255)
Q Consensus 42 ~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~ 84 (255)
++--+-+||+|.||+|+.| .|++. .+.+.-.|+++|+
T Consensus 150 ~~~gL~fFy~~~C~~C~~~-----apil~-~fa~~ygi~v~~V 186 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKM-----APVIQ-AFAKEYGISVIPI 186 (256)
T ss_pred hceeEEEEECCCCchhHHH-----HHHHH-HHHHHhCCeEEEE
Confidence 4478899999999999876 56665 4666566778776
No 39
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=45.01 E-value=17 Score=25.74 Aligned_cols=14 Identities=36% Similarity=0.560 Sum_probs=10.4
Q ss_pred ceeeEEEECCeecC
Q 043871 188 QFVPWLTLNGDAVG 201 (255)
Q Consensus 188 ~~VPwI~iNG~~~~ 201 (255)
..||.|.|||++++
T Consensus 50 ~~vP~v~i~~~~iG 63 (73)
T cd03027 50 SVVPQIFFNEKLVG 63 (73)
T ss_pred CCcCEEEECCEEEe
Confidence 56788888887765
No 40
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=44.23 E-value=16 Score=26.53 Aligned_cols=17 Identities=12% Similarity=0.004 Sum_probs=14.7
Q ss_pred eEEEEEEEeCChhHHHH
Q 043871 44 VNLSVYYESLSDTGAEF 60 (255)
Q Consensus 44 V~V~vYyESlCPd~~~F 60 (255)
-+|.||.-+-||+|++-
T Consensus 8 ~~V~ly~~~~Cp~C~~a 24 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKA 24 (79)
T ss_pred CCEEEEECCCCHhHHHH
Confidence 45889999999999887
No 41
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=43.98 E-value=14 Score=25.84 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=9.8
Q ss_pred eeeEEEECCeecC
Q 043871 189 FVPWLTLNGDAVG 201 (255)
Q Consensus 189 ~VPwI~iNG~~~~ 201 (255)
.||.|.|||++..
T Consensus 51 ~vP~v~i~g~~ig 63 (75)
T cd03418 51 TVPQIFIGDVHIG 63 (75)
T ss_pred ccCEEEECCEEEe
Confidence 6788888887764
No 42
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=43.68 E-value=19 Score=24.40 Aligned_cols=15 Identities=13% Similarity=0.031 Sum_probs=10.5
Q ss_pred EEEEEEeCChhHHHH
Q 043871 46 LSVYYESLSDTGAEF 60 (255)
Q Consensus 46 V~vYyESlCPd~~~F 60 (255)
|.+|...-||+|++.
T Consensus 1 V~vy~~~~C~~C~~~ 15 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKA 15 (60)
T ss_dssp EEEEESTTSHHHHHH
T ss_pred cEEEEcCCCcCHHHH
Confidence 567777777777666
No 43
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=43.64 E-value=59 Score=24.09 Aligned_cols=35 Identities=14% Similarity=0.295 Sum_probs=25.6
Q ss_pred CCCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccC
Q 043871 39 KQDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTS 75 (255)
Q Consensus 39 ~~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d 75 (255)
...+++-+-+|+-+-||.|+.+.. .|.++.+ ++.+
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~-~l~~l~~-~~~~ 44 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKP-ILNKVID-EFDG 44 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHH-HHHHHHH-HhCC
Confidence 467788899999999999999853 3555544 4554
No 44
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=42.42 E-value=45 Score=28.72 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=25.2
Q ss_pred EEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEee
Q 043871 45 NLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPW 84 (255)
Q Consensus 45 ~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~ 84 (255)
+|++|+.-.||.|--- .++|..+.. ..-++|++.||
T Consensus 2 ~Id~~~D~vcPwcylg-~~~l~~~~~---~~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYSYLA-FEVLCRYQT---AWNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHHHHH-HHHHHHHHH---HhCCeEEEEee
Confidence 5789999999999333 344554443 13488999998
No 45
>PHA03050 glutaredoxin; Provisional
Probab=41.84 E-value=32 Score=27.08 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhhhcCCCCceeeEEEECCeecC
Q 043871 169 GRWLELIYAAETERLKPPIQFVPWLTLNGDAVG 201 (255)
Q Consensus 169 G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 201 (255)
+.++..+..+.| +.+.||.|+|||++++
T Consensus 54 ~~~~~~~l~~~t-----G~~tVP~IfI~g~~iG 81 (108)
T PHA03050 54 ENELRDYFEQIT-----GGRTVPRIFFGKTSIG 81 (108)
T ss_pred CHHHHHHHHHHc-----CCCCcCEEEECCEEEe
Confidence 445555555555 3478999999999975
No 46
>PHA03050 glutaredoxin; Provisional
Probab=40.48 E-value=18 Score=28.57 Aligned_cols=16 Identities=0% Similarity=0.034 Sum_probs=14.6
Q ss_pred EEEEEEEeCChhHHHH
Q 043871 45 NLSVYYESLSDTGAEF 60 (255)
Q Consensus 45 ~V~vYyESlCPd~~~F 60 (255)
+|.||.-+-||+|++-
T Consensus 14 ~V~vys~~~CPyC~~a 29 (108)
T PHA03050 14 KVTIFVKFTCPFCRNA 29 (108)
T ss_pred CEEEEECCCChHHHHH
Confidence 5889999999999886
No 47
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=39.69 E-value=22 Score=26.01 Aligned_cols=16 Identities=0% Similarity=-0.164 Sum_probs=12.8
Q ss_pred EEEEEEEeCChhHHHH
Q 043871 45 NLSVYYESLSDTGAEF 60 (255)
Q Consensus 45 ~V~vYyESlCPd~~~F 60 (255)
+|.||+-+-||.|.+.
T Consensus 2 ~v~iy~~~~C~~C~~a 17 (85)
T PRK11200 2 FVVIFGRPGCPYCVRA 17 (85)
T ss_pred EEEEEeCCCChhHHHH
Confidence 5788888888888776
No 48
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=39.44 E-value=17 Score=24.66 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=13.2
Q ss_pred EEEEEEeCChhHHHH
Q 043871 46 LSVYYESLSDTGAEF 60 (255)
Q Consensus 46 V~vYyESlCPd~~~F 60 (255)
|.+|+-+-||.|++.
T Consensus 2 i~lf~~~~C~~C~~~ 16 (74)
T TIGR02196 2 VKVYTTPWCPPCKKA 16 (74)
T ss_pred EEEEcCCCChhHHHH
Confidence 789999999999875
No 49
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=39.23 E-value=19 Score=27.75 Aligned_cols=17 Identities=6% Similarity=-0.058 Sum_probs=15.0
Q ss_pred EEEEEEEeCChhHHHHH
Q 043871 45 NLSVYYESLSDTGAEFI 61 (255)
Q Consensus 45 ~V~vYyESlCPd~~~Fi 61 (255)
+|.||--+.||+|.+.-
T Consensus 9 ~Vvvysk~~Cp~C~~ak 25 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVK 25 (99)
T ss_pred CEEEEECCCCHHHHHHH
Confidence 58899999999999873
No 50
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=39.07 E-value=28 Score=30.31 Aligned_cols=33 Identities=9% Similarity=0.281 Sum_probs=22.7
Q ss_pred EEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEee
Q 043871 46 LSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPW 84 (255)
Q Consensus 46 V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~ 84 (255)
|-+|+.|-||.|+.++- .|..+.+ +. .+.++++
T Consensus 73 lV~FwaswCp~C~~e~P-~L~~l~~-~~----g~~Vi~V 105 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDP-VLKQLAQ-QY----GFSVFPY 105 (181)
T ss_pred EEEEECCCCHhHHHHHH-HHHHHHH-Hc----CCEEEEE
Confidence 67899999999999952 3444443 22 4677765
No 51
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=38.41 E-value=1.4e+02 Score=24.09 Aligned_cols=33 Identities=3% Similarity=0.108 Sum_probs=23.1
Q ss_pred CCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccC
Q 043871 41 DEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTS 75 (255)
Q Consensus 41 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d 75 (255)
..++-|-.|+-+-||.|+... ..|....+ ++.+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~-~~l~~~~~-~~~~ 92 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEM-PYMNELYP-KYKE 92 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHH-HHHHHHHH-Hhhc
Confidence 456677788899999999875 44666655 3543
No 52
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=38.35 E-value=23 Score=23.93 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=13.3
Q ss_pred EEEEEEEeCChhHHHH
Q 043871 45 NLSVYYESLSDTGAEF 60 (255)
Q Consensus 45 ~V~vYyESlCPd~~~F 60 (255)
+|.+|+.+-||+|++.
T Consensus 1 ~v~l~~~~~c~~c~~~ 16 (73)
T cd02976 1 EVTVYTKPDCPYCKAT 16 (73)
T ss_pred CEEEEeCCCChhHHHH
Confidence 4788999999999875
No 53
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=37.28 E-value=1.1e+02 Score=25.50 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=16.1
Q ss_pred CCceEEEEEEEeCChhHHHH
Q 043871 41 DEKVNLSVYYESLSDTGAEF 60 (255)
Q Consensus 41 ~~kV~V~vYyESlCPd~~~F 60 (255)
..++-|-.||-+-||.|+.+
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l 65 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNF 65 (152)
T ss_pred CCCEEEEEEECCCCHHHHHH
Confidence 34567888899999999876
No 54
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=36.62 E-value=20 Score=25.56 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=12.2
Q ss_pred CceeeEEEECCeecC
Q 043871 187 IQFVPWLTLNGDAVG 201 (255)
Q Consensus 187 ~~~VPwI~iNG~~~~ 201 (255)
...||.|.|||+...
T Consensus 47 ~~~vP~i~i~g~~ig 61 (79)
T TIGR02181 47 RRTVPQIFIGDVHVG 61 (79)
T ss_pred CCCcCEEEECCEEEc
Confidence 577899999998865
No 55
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=35.96 E-value=31 Score=27.50 Aligned_cols=19 Identities=5% Similarity=-0.073 Sum_probs=15.4
Q ss_pred CceEEEEEEEeCChhHHHH
Q 043871 42 EKVNLSVYYESLSDTGAEF 60 (255)
Q Consensus 42 ~kV~V~vYyESlCPd~~~F 60 (255)
.+.-|-.|+-+-||+|+.|
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~ 41 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKF 41 (122)
T ss_pred CCcEEEEEECCCChhHHHH
Confidence 3445777889999999988
No 56
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=35.45 E-value=76 Score=23.09 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=24.9
Q ss_pred CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEE
Q 043871 40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRL 81 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~l 81 (255)
...+.-+-.||-+-|+.|+.+. .++..+.+ .+.+.-++.+
T Consensus 16 ~~~~~~~v~f~~~~C~~C~~~~-~~~~~~~~-~~~~~~~~~~ 55 (104)
T cd02995 16 DSDKDVLVEFYAPWCGHCKALA-PIYEELAE-KLKGDDNVVI 55 (104)
T ss_pred CCCCcEEEEEECCCCHHHHHHh-hHHHHHHH-HhcCCCCEEE
Confidence 3346677788999999999874 34444443 3444334444
No 57
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=35.13 E-value=24 Score=26.10 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=11.4
Q ss_pred CCceeeEEEECCeecC
Q 043871 186 PIQFVPWLTLNGDAVG 201 (255)
Q Consensus 186 ~~~~VPwI~iNG~~~~ 201 (255)
+.+-||.|.|||++..
T Consensus 50 g~~tvP~I~i~~~~ig 65 (80)
T COG0695 50 GQRTVPQIFIGGKHVG 65 (80)
T ss_pred CCCCcCEEEECCEEEe
Confidence 3467888888887754
No 58
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=34.00 E-value=31 Score=24.22 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=11.3
Q ss_pred EEEEEEEeCChhHHHH
Q 043871 45 NLSVYYESLSDTGAEF 60 (255)
Q Consensus 45 ~V~vYyESlCPd~~~F 60 (255)
+|.||.-+-||+|.+-
T Consensus 2 ~v~lys~~~Cp~C~~a 17 (72)
T cd03029 2 SVSLFTKPGCPFCARA 17 (72)
T ss_pred eEEEEECCCCHHHHHH
Confidence 4667777777777665
No 59
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=33.47 E-value=82 Score=25.19 Aligned_cols=21 Identities=0% Similarity=-0.263 Sum_probs=14.4
Q ss_pred CCCceEEEEEEEe--CChhHHHH
Q 043871 40 QDEKVNLSVYYES--LSDTGAEF 60 (255)
Q Consensus 40 ~~~kV~V~vYyES--lCPd~~~F 60 (255)
..+.+.|-.||.. .||+|+.+
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c~~i 47 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEVLDV 47 (111)
T ss_pred hCCCCEEEEecCCcccCcchhhh
Confidence 3444556666666 79999876
No 60
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=33.22 E-value=28 Score=25.82 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=11.7
Q ss_pred ceeeEEEECCeecCc
Q 043871 188 QFVPWLTLNGDAVGP 202 (255)
Q Consensus 188 ~~VPwI~iNG~~~~~ 202 (255)
..||.|.|||++++.
T Consensus 56 ~tVP~ifi~g~~igG 70 (86)
T TIGR02183 56 ETVPQIFVDEKHVGG 70 (86)
T ss_pred CCcCeEEECCEEecC
Confidence 578888888888753
No 61
>PRK10638 glutaredoxin 3; Provisional
Probab=32.46 E-value=39 Score=24.58 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=12.3
Q ss_pred EEEEEEEeCChhHHHH
Q 043871 45 NLSVYYESLSDTGAEF 60 (255)
Q Consensus 45 ~V~vYyESlCPd~~~F 60 (255)
+|.+|..+-||+|++.
T Consensus 3 ~v~ly~~~~Cp~C~~a 18 (83)
T PRK10638 3 NVEIYTKATCPFCHRA 18 (83)
T ss_pred cEEEEECCCChhHHHH
Confidence 4678888888888766
No 62
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=32.12 E-value=24 Score=28.56 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=25.8
Q ss_pred CChhHHHHHHHhhHHHHHhhccCceEEEEEeeeece
Q 043871 53 LSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKAQ 88 (255)
Q Consensus 53 lCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA~ 88 (255)
.||+|... +-|+-.+- .+.+.+|++.|+|-+-+
T Consensus 23 ~Cp~c~~i--EGlLa~~P-~l~~~ldV~rV~f~RPR 55 (112)
T PF11287_consen 23 YCPHCAAI--EGLLASFP-DLRERLDVRRVDFPRPR 55 (112)
T ss_pred ECCchHHH--HhHHhhCh-hhhhcccEEEeCCCCch
Confidence 59999765 44666665 58899999999997763
No 63
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.65 E-value=65 Score=26.61 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=21.0
Q ss_pred EeCChhHHHHHHHhhHHHHHhhccCceEEEEEeeeec
Q 043871 51 ESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIPWGKA 87 (255)
Q Consensus 51 ESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP~GnA 87 (255)
+|=||||++.- -.+..+++ ....-++|-.|.-|+-
T Consensus 42 qSWCPdCV~AE-Pvi~~alk-~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 42 QSWCPDCVAAE-PVINEALK-HAPEDVHFVHVYVGNR 76 (128)
T ss_pred CcCCchHHHhh-HHHHHHHH-hCCCceEEEEEEecCC
Confidence 44599999872 22333443 3555566666666765
No 64
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=30.90 E-value=94 Score=18.88 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=13.4
Q ss_pred EEEEEEeCChhHHHHH
Q 043871 46 LSVYYESLSDTGAEFI 61 (255)
Q Consensus 46 V~vYyESlCPd~~~Fi 61 (255)
|.+|+.+-||+|++..
T Consensus 1 l~~~~~~~c~~c~~~~ 16 (69)
T cd01659 1 LVLFYAPWCPFCQALR 16 (69)
T ss_pred CEEEECCCChhHHhhh
Confidence 3578999999999884
No 65
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=30.29 E-value=1.5e+02 Score=21.15 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=20.0
Q ss_pred eEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEe
Q 043871 44 VNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIP 83 (255)
Q Consensus 44 V~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP 83 (255)
|+|.+ +-+-||.|.... .-+..+.. .. + ++++++-
T Consensus 1 m~I~v-~~~~C~~C~~~~-~~~~~~~~-~~-~-i~~ei~~ 35 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELV-QLLKEAAE-EL-G-IEVEIID 35 (76)
T ss_dssp EEEEE-ECSSCTTHHHHH-HHHHHHHH-HT-T-EEEEEEE
T ss_pred CEEEE-eCCCCCCcHHHH-HHHHHHHH-hc-C-CeEEEEE
Confidence 56778 556699998653 22333433 23 3 6665554
No 66
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=28.81 E-value=59 Score=25.22 Aligned_cols=29 Identities=21% Similarity=0.120 Sum_probs=21.6
Q ss_pred CCCCCchhHHHHHHHHHHHHccCCCCccc
Q 043871 1 MTFHQLPSSFLSTALLFMFIFPHCSSVEY 29 (255)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (255)
|+-|-+.++|||..|-.-++.||+-+-++
T Consensus 1 MaRRlwiLslLAVtLtVALAAPsQKsKRS 29 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAPSQKSKRS 29 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhccccccccc
Confidence 55566677889988888888887765443
No 67
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=28.77 E-value=1.2e+02 Score=23.47 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=27.8
Q ss_pred CCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEE
Q 043871 41 DEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLI 82 (255)
Q Consensus 41 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lV 82 (255)
..|+-|-.|+-+-||.|++.+- .|..+++ ++.+ -++.+|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p-~l~~l~~-~~~~-~~~~vi 60 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLP-YLTDLEQ-KYKD-DGLVVI 60 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHH-HHHHHHH-HcCc-CCeEEE
Confidence 4578888889999999998864 4777776 4554 244444
No 68
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=28.65 E-value=3e+02 Score=24.48 Aligned_cols=20 Identities=5% Similarity=0.086 Sum_probs=16.1
Q ss_pred CceEEEEEEEeCChhHHHHH
Q 043871 42 EKVNLSVYYESLSDTGAEFI 61 (255)
Q Consensus 42 ~kV~V~vYyESlCPd~~~Fi 61 (255)
.+.-+-.||-+-||.|+.+.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~ 71 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMA 71 (224)
T ss_pred CCCEEEEEECCCChHHHHHH
Confidence 35567778999999999884
No 69
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=28.43 E-value=93 Score=22.42 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=22.5
Q ss_pred CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccC
Q 043871 40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTS 75 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d 75 (255)
...+.-|-.||...||.|+.+. ..|..+.. .+.+
T Consensus 15 ~~~~~vvv~f~~~~C~~C~~~~-~~~~~~~~-~~~~ 48 (103)
T PF00085_consen 15 ESDKPVVVYFYAPWCPPCKAFK-PILEKLAK-EYKD 48 (103)
T ss_dssp TTSSEEEEEEESTTSHHHHHHH-HHHHHHHH-HTTT
T ss_pred ccCCCEEEEEeCCCCCcccccc-ceeccccc-cccc
Confidence 3356677778889999999983 34444443 3444
No 70
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=28.18 E-value=1e+02 Score=22.88 Aligned_cols=49 Identities=14% Similarity=0.012 Sum_probs=30.6
Q ss_pred HHHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCeecCc
Q 043871 145 VWRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVGP 202 (255)
Q Consensus 145 ~~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~~ 202 (255)
..+.-.+..|++++.+.- . ...++..+..+.| +...||.|.|||+++..
T Consensus 28 ~ak~~L~~~~i~y~~idv--~--~~~~~~~~l~~~~-----g~~tvP~vfi~g~~iGG 76 (90)
T cd03028 28 KVVQILNQLGVDFGTFDI--L--EDEEVRQGLKEYS-----NWPTFPQLYVNGELVGG 76 (90)
T ss_pred HHHHHHHHcCCCeEEEEc--C--CCHHHHHHHHHHh-----CCCCCCEEEECCEEEeC
Confidence 345666777887765542 1 1134545555444 34679999999998753
No 71
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=27.89 E-value=48 Score=24.02 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=18.8
Q ss_pred CCceEEEEEEEeCChhHHHHH
Q 043871 41 DEKVNLSVYYESLSDTGAEFI 61 (255)
Q Consensus 41 ~~kV~V~vYyESlCPd~~~Fi 61 (255)
..++-|-.||.+-||.|+.+.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~ 32 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLA 32 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhC
Confidence 577889999999999999984
No 72
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=26.77 E-value=1.7e+02 Score=20.46 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=19.2
Q ss_pred ceEEEEEEEeCChhHHHHHHHhhHHHHH
Q 043871 43 KVNLSVYYESLSDTGAEFITHDLGKVFE 70 (255)
Q Consensus 43 kV~V~vYyESlCPd~~~Fi~~qL~P~~~ 70 (255)
+.-|-.||.+-||.|+.+.. .+..+.+
T Consensus 16 ~~~~v~f~~~~C~~C~~~~~-~~~~~~~ 42 (101)
T cd02961 16 KDVLVEFYAPWCGHCKALAP-EYEKLAK 42 (101)
T ss_pred CcEEEEEECCCCHHHHhhhH-HHHHHHH
Confidence 36788888899999999843 3444433
No 73
>PRK10329 glutaredoxin-like protein; Provisional
Probab=26.05 E-value=51 Score=24.34 Aligned_cols=16 Identities=6% Similarity=0.067 Sum_probs=13.5
Q ss_pred EEEEEEEeCChhHHHH
Q 043871 45 NLSVYYESLSDTGAEF 60 (255)
Q Consensus 45 ~V~vYyESlCPd~~~F 60 (255)
+|.||.-+-||+|.+-
T Consensus 2 ~v~lYt~~~Cp~C~~a 17 (81)
T PRK10329 2 RITIYTRNDCVQCHAT 17 (81)
T ss_pred EEEEEeCCCCHhHHHH
Confidence 5789999999999874
No 74
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=26.00 E-value=1.1e+02 Score=23.35 Aligned_cols=47 Identities=11% Similarity=-0.002 Sum_probs=28.5
Q ss_pred HHHhHhhcCCChhhhhhhhcCchhHHHHHHHHHHhhhcCCCCceeeEEEECCeecC
Q 043871 146 WRTCCQNLKLSPNLIKDCYDNGTGRWLELIYAAETERLKPPIQFVPWLTLNGDAVG 201 (255)
Q Consensus 146 ~~~Ca~~~gl~~~~I~~C~~s~~G~~Ll~~~~~~T~~l~P~~~~VPwI~iNG~~~~ 201 (255)
.+.-.++.|+++..+.- ....++..+..+.| +...||.|.|||++++
T Consensus 33 ak~lL~~~~i~~~~~di----~~~~~~~~~l~~~t-----g~~tvP~vfi~g~~iG 79 (97)
T TIGR00365 33 AVQILKACGVPFAYVNV----LEDPEIRQGIKEYS-----NWPTIPQLYVKGEFVG 79 (97)
T ss_pred HHHHHHHcCCCEEEEEC----CCCHHHHHHHHHHh-----CCCCCCEEEECCEEEe
Confidence 34445667777664422 12234444444444 3468999999999975
No 75
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=25.16 E-value=1.1e+02 Score=22.81 Aligned_cols=22 Identities=9% Similarity=-0.147 Sum_probs=17.0
Q ss_pred CCceEEEEEEEeCChhHHHHHH
Q 043871 41 DEKVNLSVYYESLSDTGAEFIT 62 (255)
Q Consensus 41 ~~kV~V~vYyESlCPd~~~Fi~ 62 (255)
..++-|-.||-+-||.|+.+..
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~ 31 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEK 31 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHH
Confidence 3456666888899999999853
No 76
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.34 E-value=46 Score=25.38 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=14.0
Q ss_pred EEEEEeCChhHHHHHH
Q 043871 47 SVYYESLSDTGAEFIT 62 (255)
Q Consensus 47 ~vYyESlCPd~~~Fi~ 62 (255)
.+|+--+||||.-|+.
T Consensus 5 ~lfgsn~Cpdca~a~e 20 (85)
T COG4545 5 KLFGSNLCPDCAPAVE 20 (85)
T ss_pred eeeccccCcchHHHHH
Confidence 6899999999999863
No 77
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=23.68 E-value=53 Score=23.09 Aligned_cols=15 Identities=7% Similarity=0.120 Sum_probs=10.1
Q ss_pred EEEEEEeCChhHHHH
Q 043871 46 LSVYYESLSDTGAEF 60 (255)
Q Consensus 46 V~vYyESlCPd~~~F 60 (255)
+.||+-..||.|++-
T Consensus 2 i~Ly~~~~~p~c~kv 16 (77)
T cd03040 2 ITLYQYKTCPFCCKV 16 (77)
T ss_pred EEEEEcCCCHHHHHH
Confidence 566777777777665
No 78
>PRK09381 trxA thioredoxin; Provisional
Probab=23.56 E-value=2.2e+02 Score=21.23 Aligned_cols=22 Identities=5% Similarity=0.078 Sum_probs=17.2
Q ss_pred CCCceEEEEEEEeCChhHHHHH
Q 043871 40 QDEKVNLSVYYESLSDTGAEFI 61 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi 61 (255)
..++.-|-.||-+-||.|+.+.
T Consensus 19 ~~~~~vvv~f~~~~C~~C~~~~ 40 (109)
T PRK09381 19 KADGAILVDFWAEWCGPCKMIA 40 (109)
T ss_pred cCCCeEEEEEECCCCHHHHHHh
Confidence 3455667788889999999884
No 79
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=23.36 E-value=46 Score=23.47 Aligned_cols=15 Identities=13% Similarity=0.076 Sum_probs=9.4
Q ss_pred EEEEEEeCChhHHHH
Q 043871 46 LSVYYESLSDTGAEF 60 (255)
Q Consensus 46 V~vYyESlCPd~~~F 60 (255)
|.||.-+-||+|++-
T Consensus 1 v~ly~~~~Cp~C~~a 15 (72)
T TIGR02194 1 ITVYSKNNCVQCKMT 15 (72)
T ss_pred CEEEeCCCCHHHHHH
Confidence 356666667776654
No 80
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=23.27 E-value=1.6e+02 Score=21.75 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=18.2
Q ss_pred CCCCceEEEEEEEeCChhHHHHH
Q 043871 39 KQDEKVNLSVYYESLSDTGAEFI 61 (255)
Q Consensus 39 ~~~~kV~V~vYyESlCPd~~~Fi 61 (255)
....+.-|-.||-+-||.|+.+.
T Consensus 15 ~~~~~~~lv~f~a~wC~~C~~~~ 37 (109)
T cd03002 15 HNTNYTTLVEFYAPWCGHCKNLK 37 (109)
T ss_pred hcCCCeEEEEEECCCCHHHHhhC
Confidence 34566678888889999999874
No 81
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.22 E-value=37 Score=26.50 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHccC
Q 043871 9 SFLSTALLFMFIFPH 23 (255)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (255)
+||.|.|++..++..
T Consensus 5 ~~llL~l~LA~lLli 19 (95)
T PF07172_consen 5 AFLLLGLLLAALLLI 19 (95)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455554555444443
No 82
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=23.20 E-value=1.8e+02 Score=20.68 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=16.7
Q ss_pred CCceEEEEEEEeCChhHHHHH
Q 043871 41 DEKVNLSVYYESLSDTGAEFI 61 (255)
Q Consensus 41 ~~kV~V~vYyESlCPd~~~Fi 61 (255)
.++.-|-.||..-||.|+.+.
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~ 33 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIA 33 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhC
Confidence 345667788889999999884
No 83
>PTZ00051 thioredoxin; Provisional
Probab=23.01 E-value=2.2e+02 Score=20.53 Aligned_cols=28 Identities=4% Similarity=0.090 Sum_probs=20.3
Q ss_pred CCCceEEEEEEEeCChhHHHHHHHhhHHH
Q 043871 40 QDEKVNLSVYYESLSDTGAEFITHDLGKV 68 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~ 68 (255)
...+.-|-.||-+-||.|+.+. ..|..+
T Consensus 16 ~~~~~vli~f~~~~C~~C~~~~-~~l~~l 43 (98)
T PTZ00051 16 SQNELVIVDFYAEWCGPCKRIA-PFYEEC 43 (98)
T ss_pred hcCCeEEEEEECCCCHHHHHHh-HHHHHH
Confidence 3456778888999999999984 334443
No 84
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=22.53 E-value=2.7e+02 Score=23.36 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=18.3
Q ss_pred CCceEEEEEEEeCChhHHHHHH
Q 043871 41 DEKVNLSVYYESLSDTGAEFIT 62 (255)
Q Consensus 41 ~~kV~V~vYyESlCPd~~~Fi~ 62 (255)
..|+-|-.|+-+-||.|++.+-
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p 88 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQ 88 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHH
Confidence 4678888899999999998853
No 85
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=21.97 E-value=2.1e+02 Score=20.69 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=16.4
Q ss_pred CCCceEEEEEEEeCChhHHHHH
Q 043871 40 QDEKVNLSVYYESLSDTGAEFI 61 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi 61 (255)
...+.-+-.+|-+-|+.|+.|.
T Consensus 16 ~~~~~vlv~f~a~~C~~C~~~~ 37 (103)
T cd03001 16 NSDDVWLVEFYAPWCGHCKNLA 37 (103)
T ss_pred cCCCcEEEEEECCCCHHHHHHh
Confidence 3345566677788999999994
No 86
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=21.87 E-value=2.1e+02 Score=23.20 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=17.5
Q ss_pred CCCceEEEEEEEeCChhHHHHH
Q 043871 40 QDEKVNLSVYYESLSDTGAEFI 61 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi 61 (255)
...++-|-.||-+-||.|+.+.
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~ 39 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMA 39 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhH
Confidence 4566777788888999999874
No 87
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=21.34 E-value=2e+02 Score=22.26 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=13.7
Q ss_pred CceEEEEE-EEeCChhHHHH
Q 043871 42 EKVNLSVY-YESLSDTGAEF 60 (255)
Q Consensus 42 ~kV~V~vY-yESlCPd~~~F 60 (255)
.++.|-|+ +-+-||.|+.+
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~ 40 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVT 40 (113)
T ss_pred CCeEEEEEeCCCCCCChHHH
Confidence 35566666 56799999865
No 88
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=20.50 E-value=2e+02 Score=23.51 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=27.5
Q ss_pred CCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCceEEEEEe
Q 043871 41 DEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSIVNLRLIP 83 (255)
Q Consensus 41 ~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~vdl~lVP 83 (255)
..++.|-.|+-+-||.|++-+ ..|..+.+ ++.+ -++++|-
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~-~~l~~l~~-~~~~-~~v~~v~ 63 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIE-DRLNRLAK-EYGA-KGVAVVA 63 (171)
T ss_pred CCCEEEEEEECCCCccHHHHH-HHHHHHHH-HHhh-CCeEEEE
Confidence 567888899999999998775 45666665 3543 2444443
No 89
>PF15299 ALS2CR8: Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8
Probab=20.47 E-value=35 Score=30.38 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=16.9
Q ss_pred ceEEEEEeeeeceeecCCcceeecCChh
Q 043871 76 IVNLRLIPWGKAQIVEPNETIVCEHGED 103 (255)
Q Consensus 76 ~vdl~lVP~GnA~~~~~~~~f~CQHGp~ 103 (255)
+|.+.-|||=.. +...+.||||++
T Consensus 21 ~ip~dgiPFi~~----g~~~~~Cq~G~d 44 (225)
T PF15299_consen 21 YIPFDGIPFIII----GTKVYECQHGKD 44 (225)
T ss_pred cccCCCCCeEEe----eceEEEeeCCCc
Confidence 567777777432 345688999996
No 90
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=20.19 E-value=2.7e+02 Score=20.78 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=16.4
Q ss_pred CceEEEEEEEeCChhHHHHH
Q 043871 42 EKVNLSVYYESLSDTGAEFI 61 (255)
Q Consensus 42 ~kV~V~vYyESlCPd~~~Fi 61 (255)
.+.-+-.||-+-||.|+++.
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~ 37 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLH 37 (108)
T ss_pred CCEEEEEEECCCCHHHHhhH
Confidence 45667888899999999874
No 91
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=20.12 E-value=2e+02 Score=22.44 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=26.5
Q ss_pred CCCceEEEEEEEeCChhHHHHHHHhhHHHHHhhccCc-eEEEEE
Q 043871 40 QDEKVNLSVYYESLSDTGAEFITHDLGKVFEKDLTSI-VNLRLI 82 (255)
Q Consensus 40 ~~~kV~V~vYyESlCPd~~~Fi~~qL~P~~~~~l~d~-vdl~lV 82 (255)
-..|+-|-.|+-+-||.|+..+- .|..+++ .+.+. -+++++
T Consensus 15 ~~Gk~vll~F~atwC~~C~~~~p-~l~~l~~-~~~~~~~~v~vi 56 (132)
T cd02964 15 LEGKTVGLYFSASWCPPCRAFTP-KLVEFYE-KLKEEGKNFEIV 56 (132)
T ss_pred hCCCEEEEEEECCCCchHHHHHH-HHHHHHH-HHhhcCCCeEEE
Confidence 35688888888999999999753 3555554 34432 234444
Done!