BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043873
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZQ6|A Chain A, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|B Chain B, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|C Chain C, Adp-Alf4 Complex Of M. Therm. Trc40
pdb|3ZQ6|D Chain D, Adp-Alf4 Complex Of M. Therm. Trc40
Length = 324
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/313 (35%), Positives = 186/313 (59%), Gaps = 26/313 (8%)
Query: 102 CAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKA 161
+A+ A+ A G T+VISTDPAHSLSDS +++ G T P + + L+A+EI+PE A
Sbjct: 30 ISAATALWMARSGKKTLVISTDPAHSLSDSLEREI-GHT--PTK-ITENLYAVEIDPEVA 85
Query: 162 REEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVM 221
EE++ Q GM GL ML DQ+ + + PG+DEA A + +
Sbjct: 86 MEEYQAKLQEQAAMNPGM-------GLDMLQDQMD-------MASMSPGIDEAAAFDQFL 131
Query: 222 QFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSV-- 279
+++ + +Y++ ++FDTAPTGHTLRLLS P+ +D+ +GKM+K+++++ S AFK++
Sbjct: 132 RYMTTDEYDI---VIFDTAPTGHTLRLLSFPEIMDSWVGKMIKIRRQIGSMAKAFKNILP 188
Query: 280 FGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRK 339
F +++++D A +E ++++ R++ DP+ T F +V IP M+I ES R +L K
Sbjct: 189 FMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEK 248
Query: 340 ECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDVEIR 399
I +IVNQVL P SDC+FC +RK Q L+ I + ++ + + PL+ E +
Sbjct: 249 YSIHADGVIVNQVL-PEESDCEFCNARRKLQQERLKQIRE--KFSDKVVAEVPLLKKEAK 305
Query: 400 GVPALKFMGDMIW 412
G+ L+ + + ++
Sbjct: 306 GIETLEKIAEQLY 318
>pdb|3UG6|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
Length = 349
Score = 174 bits (440), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 116/331 (35%), Positives = 188/331 (56%), Gaps = 29/331 (8%)
Query: 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEG 146
K+ M GGKGGVGKT+ +A+ V A G +++STDPAHSL D F Q+ G V+G
Sbjct: 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEF-GHEPTKVKG 85
Query: 147 VDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLG-MLADQLGELKLGELLD 205
D+ L+ +EI+P+KA EE++ + + ++ LG ML DQL L
Sbjct: 86 YDN-LYVVEIDPQKAMEEYKEKLKAQ---------IEENPFLGEMLEDQLEMAALS---- 131
Query: 206 TPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKL 265
PG DE+ A +++++S N F ++FDTAPTGHTLR L +P+ +D + K++KL
Sbjct: 132 ---PGTDESAAFDVFLKYMDS---NEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKL 185
Query: 266 KKKLASTTSAFKSVFGKEKKQQDVASDK----VEQLRERMAKVRDLFRDPDATEFVIVTI 321
+K+++ K + K +D+ DK +E+++ER+ + R++ DP+ T F +V I
Sbjct: 186 RKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVI 245
Query: 322 PTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDP 381
P M+I ES R +L+K IP+ +IVNQ++P C FC +R+ Q++ LE I
Sbjct: 246 PEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQ-CDFCRARRELQLKRLEMIKE-- 302
Query: 382 QLANLRLVQAPLVDVEIRGVPALKFMGDMIW 412
+ + + PL+ E +G+ LK + +++
Sbjct: 303 KFGDKVIAYVPLLRTEAKGIETLKQIAKILY 333
>pdb|3IQW|A Chain A, Amppnp Complex Of C. Therm. Get3
pdb|3IQW|B Chain B, Amppnp Complex Of C. Therm. Get3
pdb|3IQX|A Chain A, Adp Complex Of C.Therm. Get3 In Closed Form
pdb|3IQX|B Chain B, Adp Complex Of C.Therm. Get3 In Closed Form
Length = 334
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 167/316 (52%), Gaps = 31/316 (9%)
Query: 103 AASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAR 162
+ SLA++ A +++STDPAH+LSD+F+Q G VEG D+ L+A+EI+P +
Sbjct: 33 SCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKF-GKEARLVEGFDN-LYAMEIDPNGSM 90
Query: 163 EEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQ 222
++ G G +G G G+G++ D L PG+DEA++ ++V++
Sbjct: 91 QDLLAGQTGDGDAGMG--------GVGVMQD----------LAYAIPGIDEAMSFAEVLK 132
Query: 223 FVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGK 282
V S Y IVFDTAPTGHTLR L P L+ ++ K+ +L + S + G
Sbjct: 133 QVNSLSYET---IVFDTAPTGHTLRFLQFPTVLEKALAKVSQLSGQYGSLLNGILGGSGT 189
Query: 283 EKKQQDVAS--DKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKE 340
Q ++ +K++ LR +++V F+D T FV V IP +++ E+ R+ L
Sbjct: 190 LPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQELANY 249
Query: 341 CIPVQRLIVNQVL-PPSASDCKFCAMKRKDQMRVLETI--MSDPQLANLRLVQAPLVDVE 397
I ++VNQ+L P SDC+ C +R+ Q + L+ I + D + +V+ PL+ E
Sbjct: 250 GIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEE---FNVVKMPLLVEE 306
Query: 398 IRGVPALKFMGDMIWK 413
+RG L+ +M+ K
Sbjct: 307 VRGKERLEKFSEMLIK 322
>pdb|3IBG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|E Chain E, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|F Chain F, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
Length = 348
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 163/315 (51%), Gaps = 31/315 (9%)
Query: 103 AASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAR 162
+ SLA++ A ++ISTDPAH+LSD+F Q G V+G S L A+EI+P +
Sbjct: 43 SCSLAIQLAKVRKSVLLISTDPAHNLSDAFGQKF-GKEARLVDGY-SNLSAMEIDPNGSI 100
Query: 163 EEFRTASQGSGG---SGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISK 219
++ + G +G GM ++M + + PG+DEA++ ++
Sbjct: 101 QDLLASGDSQGDDPLAGLGMGNMMQDLAFSI------------------PGVDEAMSFAE 142
Query: 220 VMQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSV 279
V++ V+S Y + IVFDTAPTGHTLR L P L+ ++ K+ +L + ++
Sbjct: 143 VLKQVKSLSYEV---IVFDTAPTGHTLRFLQFPTVLEKALAKLSQLSSQFGPMLNSILGA 199
Query: 280 FGKEKKQQDVAS--DKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASL 337
G Q++ K+E LRE +++V F++PD T FV V I +++ E+ R+ L
Sbjct: 200 RGGLPGGQNIDELLQKMESLRETISEVNTQFKNPDMTTFVCVCIAEFLSLYETERMIQEL 259
Query: 338 RKECIPVQRLIVNQVL-PPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDV 396
I ++VNQ+L P S C+ C +RK Q + LE I + + +V+ PL+
Sbjct: 260 TSYGIDTHAIVVNQLLFPKEGSGCEQCNARRKMQKKYLEQI--EELYEDFNVVRMPLLVE 317
Query: 397 EIRGVPALKFMGDMI 411
E+RG L+ +M+
Sbjct: 318 EVRGKEKLEKFSEML 332
>pdb|2WOO|A Chain A, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|B Chain B, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|C Chain C, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|D Chain D, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|E Chain E, Nucleotide-Free Form Of S. Pombe Get3
pdb|2WOO|F Chain F, Nucleotide-Free Form Of S. Pombe Get3
Length = 329
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 159/311 (51%), Gaps = 27/311 (8%)
Query: 103 AASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAR 162
+ SLA++ + ++ISTDPAH+LSD+F G V G D+ L A+EI+P +
Sbjct: 36 SCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTKF-GKDARKVPGFDN-LSAMEIDPNLSI 93
Query: 163 EEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQ 222
+E T + + +M + + PG+DEA+A +++++
Sbjct: 94 QEM-TEQADQQNPNNPLSGMMQDLAFTI------------------PGIDEALAFAEILK 134
Query: 223 FVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGK 282
++S +++ ++FDTAPTGHTLR L+ P L+ ++GK+ L + + S+ G
Sbjct: 135 QIKSMEFDC---VIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGSIMGV 191
Query: 283 EKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKECI 342
+QD+ K+E +R +++V F++PD T FV V I +++ E+ R+ L I
Sbjct: 192 NANEQDLFG-KMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYEI 250
Query: 343 PVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDVEIRGVP 402
++VNQ+L + C C +RK Q + L I + + +V+ P V E+RG
Sbjct: 251 DTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQI--EELYEDFHVVKVPQVPAEVRGTE 308
Query: 403 ALKFMGDMIWK 413
ALK +M+ K
Sbjct: 309 ALKSFSEMLVK 319
>pdb|3A36|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A36|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|A Chain A, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3A37|B Chain B, Structural Insight Into The Membrane Insertion Of Tail-
Anchored Proteins By Get3
pdb|3B2E|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|C Chain C, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
pdb|3B2E|D Chain D, Crystal Structure Of S. Cerevisiae Get3 In The Open
Conformation In Complex With Get1 Cytosolic Domain
Length = 362
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 160/317 (50%), Gaps = 35/317 (11%)
Query: 100 TSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPE 159
+SC+ ++ + + ++ISTDPAH+LSD+F + G V G+++ L +EI+P
Sbjct: 34 SSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKF-GKDARKVTGMNN-LSCMEIDPS 91
Query: 160 KAREEF------RTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDE 213
A ++ R + GS G GD + L+ G LAD G + PG+DE
Sbjct: 92 AALKDMNDMAVSRANNNGSDGQGDDLGSLLQG---GALADLTGSI----------PGIDE 138
Query: 214 AIAISKVMQFVESQQYN---MFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLA 270
A++ +VM+ ++ Q+ + F ++FDTAPTGHTLR L LP+ L + K ++ KL
Sbjct: 139 ALSFMEVMKHIKRQEQDEGETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFGEITNKLG 198
Query: 271 STTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMAISES 330
++F + S K+ +L+ + +R F DPD T FV V I +++ E+
Sbjct: 199 PMLNSFMGAGNVD------ISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYET 252
Query: 331 SRLHASLRKECIPVQRLIVNQVL---PPSASDCKFCAMKRKDQMRVLETIMSDPQLANLR 387
RL L + V +IVNQ+L +CK C + K Q + L+ I D +
Sbjct: 253 ERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQI--DELYEDFH 310
Query: 388 LVQAPLVDVEIRGVPAL 404
+V+ PL EIRG+ L
Sbjct: 311 VVKMPLCAGEIRGLNNL 327
>pdb|3VLC|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Semi Open
Conformation In Complex With Get1 Cytosolic Domain At
4.5 Angstrom Resolution
Length = 354
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 160/317 (50%), Gaps = 35/317 (11%)
Query: 100 TSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPE 159
+SC+ ++ + + ++ISTDPAH+LSD+F + G V G+++ L +EI+P
Sbjct: 34 SSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKF-GKDARKVTGMNN-LSCMEIDPS 91
Query: 160 KAREEF------RTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDE 213
A ++ R + GS G GD + L+ G LAD G + PG+DE
Sbjct: 92 AALKDMNDMAVSRANNNGSDGQGDDLGSLLQG---GALADLTGSI----------PGIDE 138
Query: 214 AIAISKVMQFVESQQYN---MFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLA 270
A++ +VM+ ++ Q+ + F ++FDTAPTGHTLR L LP+ L + K ++ KL
Sbjct: 139 ALSFMEVMKHIKRQEQDEGETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFGEITNKLG 198
Query: 271 STTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMAISES 330
++F + S K+ +L+ + +R F DPD T FV V I +++ E+
Sbjct: 199 PMLNSFMGAGNVD------ISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYET 252
Query: 331 SRLHASLRKECIPVQRLIVNQVL---PPSASDCKFCAMKRKDQMRVLETIMSDPQLANLR 387
RL L + V +IVNQ+L +CK C + K Q + L+ I D +
Sbjct: 253 ERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQI--DELYEDFH 310
Query: 388 LVQAPLVDVEIRGVPAL 404
+V+ PL EIRG+ L
Sbjct: 311 VVKMPLCAGEIRGLNNL 327
>pdb|3SJA|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|E Chain E, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|F Chain F, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJA|I Chain I, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|A Chain A, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJB|B Chain B, Crystal Structure Of S. Cerevisiae Get3 In The Open State
In Complex With Get1 Cytosolic Domain
pdb|3SJC|A Chain A, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|B Chain B, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|E Chain E, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJC|F Chain F, Crystal Structure Of S.Cerevisiae Get3 In The Semi-Open
State In Complex With Get1 Cytosolic Domain
pdb|3SJD|A Chain A, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|B Chain B, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
pdb|3SJD|C Chain C, Crystal Structure Of S. Cerevisiae Get3 With Bound
Adp-Mg2+ In Complex With Get2 Cytosolic Domain
Length = 362
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 159/317 (50%), Gaps = 35/317 (11%)
Query: 100 TSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPE 159
+SC+ ++ + + ++ISTDPAH+LSD+F + G V G+++ L +EI+P
Sbjct: 34 SSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKF-GKDARKVTGMNN-LSCMEIDPS 91
Query: 160 KAREEF------RTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDE 213
A ++ R + GS G GD + L+ G LAD G + PG+DE
Sbjct: 92 AALKDMNDMAVSRANNNGSDGQGDDLGSLLQG---GALADLTGSI----------PGIDE 138
Query: 214 AIAISKVMQFVESQQY---NMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLA 270
A++ +VM+ ++ Q+ F ++FDTAPTGHTLR L LP+ L + K ++ KL
Sbjct: 139 ALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFGEITNKLG 198
Query: 271 STTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMAISES 330
++F + S K+ +L+ + +R F DPD T FV V I +++ E+
Sbjct: 199 PMLNSFMGAGNVD------ISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYET 252
Query: 331 SRLHASLRKECIPVQRLIVNQVL---PPSASDCKFCAMKRKDQMRVLETIMSDPQLANLR 387
RL L + V +IVNQ+L +CK C + K Q + L+ I D +
Sbjct: 253 ERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQI--DELYEDFH 310
Query: 388 LVQAPLVDVEIRGVPAL 404
+V+ PL EIRG+ L
Sbjct: 311 VVKMPLCAGEIRGLNNL 327
>pdb|2WOJ|A Chain A, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|B Chain B, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|C Chain C, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|2WOJ|D Chain D, Adp-Alf4 Complex Of S. Cerevisiae Get3
pdb|3H84|A Chain A, Crystal Structure Of Get3
pdb|3H84|B Chain B, Crystal Structure Of Get3
pdb|3ZS8|A Chain A, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS8|B Chain B, S. Cerevisiae Get3 Complexed With A Cytosolic Get1
Fragment
pdb|3ZS9|A Chain A, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
pdb|3ZS9|B Chain B, S. Cerevisiae Get3-Adp-Alf4- Complex With A Cytosolic Get2
Fragment
Length = 354
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 159/317 (50%), Gaps = 35/317 (11%)
Query: 100 TSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPE 159
+SC+ ++ + + ++ISTDPAH+LSD+F + G V G+++ L +EI+P
Sbjct: 34 SSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKF-GKDARKVTGMNN-LSCMEIDPS 91
Query: 160 KAREEF------RTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDE 213
A ++ R + GS G GD + L+ G LAD G + PG+DE
Sbjct: 92 AALKDMNDMAVSRANNNGSDGQGDDLGSLLQG---GALADLTGSI----------PGIDE 138
Query: 214 AIAISKVMQFVESQQY---NMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLA 270
A++ +VM+ ++ Q+ F ++FDTAPTGHTLR L LP+ L + K ++ KL
Sbjct: 139 ALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFGEITNKLG 198
Query: 271 STTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMAISES 330
++F + S K+ +L+ + +R F DPD T FV V I +++ E+
Sbjct: 199 PMLNSFMGAGNVD------ISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYET 252
Query: 331 SRLHASLRKECIPVQRLIVNQVL---PPSASDCKFCAMKRKDQMRVLETIMSDPQLANLR 387
RL L + V +IVNQ+L +CK C + K Q + L+ I D +
Sbjct: 253 ERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQI--DELYEDFH 310
Query: 388 LVQAPLVDVEIRGVPAL 404
+V+ PL EIRG+ L
Sbjct: 311 VVKMPLCAGEIRGLNNL 327
>pdb|3IDQ|A Chain A, Crystal Structure Of S. Cerevisiae Get3 At 3.7 Angstrom
Resolution
Length = 369
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 159/317 (50%), Gaps = 35/317 (11%)
Query: 100 TSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPE 159
+SC+ ++ + + ++ISTDPAH+LSD+F + G V G+++ L +EI+P
Sbjct: 34 SSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKF-GKDARKVTGMNN-LSCMEIDPS 91
Query: 160 KAREEF------RTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDE 213
A ++ R + GS G GD + L+ G LAD G + PG+DE
Sbjct: 92 AALKDMNDMAVSRANNNGSDGQGDDLGSLLQG---GALADLTGSI----------PGIDE 138
Query: 214 AIAISKVMQFVESQQY---NMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLA 270
A++ +VM+ ++ Q+ F ++FDTAPTGHTLR L LP+ L + K ++ KL
Sbjct: 139 ALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFGEITNKLG 198
Query: 271 STTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMAISES 330
++F + S K+ +L+ + +R F DPD T FV V I +++ E+
Sbjct: 199 PMLNSFMGAGNVD------ISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYET 252
Query: 331 SRLHASLRKECIPVQRLIVNQVL---PPSASDCKFCAMKRKDQMRVLETIMSDPQLANLR 387
RL L + V +IVNQ+L +CK C + K Q + L+ I D +
Sbjct: 253 ERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQI--DELYEDFH 310
Query: 388 LVQAPLVDVEIRGVPAL 404
+V+ PL EIRG+ L
Sbjct: 311 VVKMPLCAGEIRGLNNL 327
>pdb|3IO3|A Chain A, Get3 With Adp From D. Hansenii In Closed Form
Length = 348
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 162/318 (50%), Gaps = 42/318 (13%)
Query: 100 TSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPE 159
+S A LA+ A ++ISTDPAH+LSD+F Q G VEG+ + L +EI+PE
Sbjct: 36 SSVAVQLAL--AQPNEQFLLISTDPAHNLSDAFCQKF-GKDARKVEGLPN-LSCMEIDPE 91
Query: 160 KAREEFRT-ASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAIS 218
A + + ASQ + D +K M++D G + PG+DEA++
Sbjct: 92 AAMSDLQQQASQYNNDPNDPLK--------SMMSDMTGSI----------PGIDEALSFM 133
Query: 219 KVMQFVESQQY---------NMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKL 269
+V++ +++Q+ + I+FDTAPTGHTLR L LP L+ + K L KL
Sbjct: 134 EVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLSKFKDLSGKL 193
Query: 270 ASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMAISE 329
S +QQD+ +K+ ++++ +++V + F +P+ T F+ V I +++ E
Sbjct: 194 GPMLSMMGG-----GQQQDIF-EKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYE 247
Query: 330 SSRLHASLRKECIPVQRLIVNQVLPPSASD--CKFCAMKRKDQMRVLETIMSDPQLANLR 387
+ R+ L + V ++VNQ+L D CK C + K Q + L+ + +
Sbjct: 248 TERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQM--GELYEDYH 305
Query: 388 LVQAPLVDVEIRGVPALK 405
LV+ PL+ EIRGV LK
Sbjct: 306 LVKMPLLGCEIRGVENLK 323
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 130/289 (44%), Gaps = 47/289 (16%)
Query: 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGV 147
+ GKGGVGKTS + + A++ A G +++STDPA ++ F+Q + G T+ + V
Sbjct: 10 YLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTI-GNTIQAIASV 68
Query: 148 DSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTP 207
L ALEI+P+ A +++R D +K ++ + + +QL E+
Sbjct: 69 PG-LSALEIDPQAAAQQYRARIV------DPIKGVLPDDVVSSINEQLSGACTTEI---- 117
Query: 208 PPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTLRLLSLP----DFLDASIGKMM 263
DE + ++ F I+FDTAPTGHT+RLL LP F+D++
Sbjct: 118 -AAFDEFTGL-----LTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSN----- 166
Query: 264 KLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPT 323
S + G EK+ RE+ A + DP T V+V
Sbjct: 167 ------PEGASCLGPMAGLEKQ------------REQYAYAVEALSDPKRTRLVLVARLQ 208
Query: 324 VMAISESSRLHASLRKECIPVQRLIVNQVLPPS--ASDCKFCAMKRKDQ 370
+ E +R H L + Q L++N VLP + A+D A+ ++Q
Sbjct: 209 KSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQ 257
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 136/325 (41%), Gaps = 67/325 (20%)
Query: 81 VAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGT 140
+A + ML GKGGVGKT+ AA++AV+ A+ G + ++DPA LS + L+
Sbjct: 322 IARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGSLNN-- 379
Query: 141 LVPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKL 200
L I+P + E +R + ++++ G + D+ G+ L
Sbjct: 380 ----------LQVSRIDPHEETERYR-------------QHVLETKGKEL--DEAGKRLL 414
Query: 201 GELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIG 260
E L +P E IA+ + V + F +V DTAPTGHTL LL I
Sbjct: 415 EEDLRSP---CTEEIAVFQAFSRVIREAGKRF--VVMDTAPTGHTLLLLDATGAYHREIA 469
Query: 261 KMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVT 320
K M K TT L +DP+ T+ ++VT
Sbjct: 470 KKMGEKGHF--TTPMM------------------------------LLQDPERTKVLLVT 497
Query: 321 IPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSD 380
+P + E++ L A L + I I+N L + + M+ + ++ +E++
Sbjct: 498 LPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKR- 556
Query: 381 PQLANLRLVQAPLVDVEIRGVPALK 405
Q A+ R+ P++ E G+ LK
Sbjct: 557 -QHAS-RVALVPVLASEPTGIDKLK 579
>pdb|3FWY|A Chain A, Crystal Structure Of The L Protein Of Rhodobacter
Sphaeroides Light- Independent Protochlorophyllide
Reductase (Bchl) With Mgadp Bound: A Homologue Of The
Nitrogenase Fe Protein
pdb|3FWY|B Chain B, Crystal Structure Of The L Protein Of Rhodobacter
Sphaeroides Light- Independent Protochlorophyllide
Reductase (Bchl) With Mgadp Bound: A Homologue Of The
Nitrogenase Fe Protein
Length = 314
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 77 FDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDL 136
DE T K + + GKGG+GK++ +++L+ F+ G + I DP H + +
Sbjct: 39 LDEADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLT--- 95
Query: 137 SGGTLVPVEGVDSPLFALEINPEKAREE 164
G+LVP V L ++ +PE+ R E
Sbjct: 96 --GSLVPT--VIDVLKDVDFHPEELRPE 119
>pdb|3Q9L|A Chain A, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3Q9L|B Chain B, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3R9I|A Chain A, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|B Chain B, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|C Chain C, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|D Chain D, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9J|A Chain A, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
pdb|3R9J|B Chain B, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
Length = 260
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVI 120
GKGGVGKT+ +A++A A G T+VI
Sbjct: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVI 37
>pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator From A. Fulgidus
Length = 263
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
GKGG GKT+ A+L V A GH ++ D
Sbjct: 10 GKGGTGKTTITANLGVALAQLGHDVTIVDAD 40
>pdb|3IGF|A Chain A, Crystal Structure Of The All4481 Protein From Nostoc Sp.
Pcc 7120, Northeast Structural Genomics Consortium
Target Nsr300
pdb|3IGF|B Chain B, Crystal Structure Of The All4481 Protein From Nostoc Sp.
Pcc 7120, Northeast Structural Genomics Consortium
Target Nsr300
Length = 374
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 19/124 (15%)
Query: 209 PGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPD------------FLD 256
PG D A+A++ + ++ S +Y+ IV+D TLR L LP+ F++
Sbjct: 105 PGXDSALALNAIREYDASGKYDT---IVYDGTGDAFTLRXLGLPESLSWYVRRFRQLFVN 161
Query: 257 ASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEF 316
+ +GK + + S+F +V D + Q+ + K ++ DP
Sbjct: 162 SDLGKTIAESPLIQPLISSFFNV----NWTADNFAQPTNQVNNFLDKGKEALADPKRVAA 217
Query: 317 VIVT 320
+VT
Sbjct: 218 FLVT 221
>pdb|4DZZ|A Chain A, Structure Of Parf-Adp, Crystal Form 1
pdb|4DZZ|B Chain B, Structure Of Parf-Adp, Crystal Form 1
pdb|4E03|A Chain A, Structure Of Parf-Adp Form 2
pdb|4E03|B Chain B, Structure Of Parf-Adp Form 2
pdb|4E07|A Chain A, Parf-Amppcp-C2221 Form
pdb|4E07|B Chain B, Parf-Amppcp-C2221 Form
pdb|4E09|A Chain A, Structure Of Parf-Amppcp, I422 Form
Length = 206
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSD 130
L KGG GKT+ ++A + G+ V+ TDP SL++
Sbjct: 6 FLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTN 46
>pdb|2YNM|A Chain A, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
pdb|2YNM|B Chain B, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
Length = 301
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126
GKGG+GK++ +++L+ F+ G + I DP H
Sbjct: 41 GKGGIGKSTTSSNLSAAFSKLGKKVLQIGCDPKH 74
>pdb|3KB1|A Chain A, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
pdb|3KB1|B Chain B, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
Length = 262
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
GKGGVGK++ A LAV +A G ++ D
Sbjct: 26 GKGGVGKSTVTALLAVHYAKQGKKVGILDAD 56
>pdb|1WCV|1 Chain 1, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEJ|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 18/120 (15%)
Query: 94 KGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTL-----VPVEGVD 148
KGGVGKT+ A +LA A G +++ DP + + G P+EG+
Sbjct: 15 KGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAERGVYHLLQGEPLEGLV 74
Query: 149 SPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPP 208
P+ + P A + A+ G+ +++ + G ++ LLD PP
Sbjct: 75 HPVDGFHLLP--ATPDLVGATVELAGAPTALREALRDEGYDLV-----------LLDAPP 121
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 18/78 (23%)
Query: 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDS 149
++ GKGG GKT+ A+L+V + G + + DL+ L V GVD
Sbjct: 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVD------------GDLTMANLSLVLGVDD 54
Query: 150 P------LFALEINPEKA 161
P + A E N E A
Sbjct: 55 PDVTLHDVLAGEANVEDA 72
>pdb|3VX3|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
pdb|3VX3|B Chain B, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
Length = 248
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 70 PRETVAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLS 129
PRE + + G +R ++ GKGGVGK+ + +LA+ A G+ ++ D H S
Sbjct: 6 PREI--AINARLEGVKRIIPVVSGKGGVGKSLVSTTLALVLAEKGYRVGLLDLD-FHGAS 62
Query: 130 D 130
D
Sbjct: 63 D 63
>pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382
From Archaeoglobus Fulgidus, Northeast Structural
Genomics Target Gr165
Length = 262
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
GKGGVGK++ A LAV +A G ++ D
Sbjct: 26 GKGGVGKSTVTALLAVHYARQGKKVGILDAD 56
>pdb|3BFV|A Chain A, Crystal Structure Of The Chimerical Protein Capab
pdb|3BFV|B Chain B, Crystal Structure Of The Chimerical Protein Capab
Length = 271
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 96 GVGKTSCAASLAVKFANHGHPTIVISTD 123
G GK++ AA+LAV +A G+ T+++ D
Sbjct: 93 GAGKSTIAANLAVAYAQAGYKTLIVDGD 120
>pdb|3PG5|A Chain A, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|B Chain B, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|C Chain C, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
pdb|3PG5|D Chain D, Crystal Structure Of Protein Dip2308 From Corynebacterium
Diphtheriae, Northeast Structural Genomics Consortium
Target Cdr78
Length = 361
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124
KGGVGKT+ + ++A FA G + + DP
Sbjct: 6 FFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDP 40
>pdb|1DE0|A Chain A, Modulating The Midpoint Potential Of The [4fe-4s] Cluster
Of The Nitrogenase Fe Protein
pdb|1DE0|B Chain B, Modulating The Midpoint Potential Of The [4fe-4s] Cluster
Of The Nitrogenase Fe Protein
pdb|1XCP|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
pdb|1XCP|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
pdb|1XCP|C Chain C, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
pdb|1XCP|D Chain D, Crystal Structure Of The Nitrogenase Fe Protein Phe135trp
With Mgadp Bound
Length = 289
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124
GKGG+GK++ +L A G +++ DP
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40
>pdb|1XDB|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp129glu
pdb|1XDB|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp129glu
Length = 289
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124
GKGG+GK++ +L A G +++ DP
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40
>pdb|1G20|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
Length = 289
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124
GKGG+GK++ +L A G +++ DP
Sbjct: 10 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 41
>pdb|1NIP|A Chain A, Crystallographic Structure Of The Nitrogenase Iron Protein
From Azotobacter Vinelandii
pdb|1NIP|B Chain B, Crystallographic Structure Of The Nitrogenase Iron Protein
From Azotobacter Vinelandii
pdb|1N2C|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|2NIP|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|2NIP|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G1M|A Chain A, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G1M|B Chain B, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G5P|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G5P|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1FP6|A Chain A, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|B Chain B, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|C Chain C, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|D Chain D, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1M1Y|E Chain E, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|F Chain F, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|G Chain G, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|H Chain H, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|M Chain M, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|N Chain N, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|O Chain O, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|P Chain P, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M34|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|M Chain M, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|N Chain N, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|O Chain O, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|1M34|P Chain P, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp- Tetrafluoroaluminate
pdb|2AFH|E Chain E, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFH|F Chain F, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFI|E Chain E, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|F Chain F, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|G Chain G, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|H Chain H, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|M Chain M, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|N Chain N, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|O Chain O, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|P Chain P, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFK|E Chain E, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|F Chain F, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|G Chain G, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|H Chain H, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
Length = 289
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124
GKGG+GK++ +L A G +++ DP
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40
>pdb|3MRU|A Chain A, Crystal Structure Of Aminoacylhistidine Dipeptidase From
Vibrio Alginolyticus
pdb|3MRU|B Chain B, Crystal Structure Of Aminoacylhistidine Dipeptidase From
Vibrio Alginolyticus
Length = 490
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFA 133
K LG G+G SC A LA K HG ++++ D ++ +F
Sbjct: 112 KGTTLGADNGIGMASCLAVLASKEIKHGPIEVLLTIDEEAGMTGAFG 158
>pdb|2C8V|A Chain A, Insights Into The Role Of Nucleotide-Dependent
Conformational Change In Nitrogenase Catalysis:
Structural Characterization Of The Nitrogenase Fe
Protein Leu127 Deletion Variant With Bound Mgatp
Length = 288
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124
GKGG+GK++ +L A G +++ DP
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40
>pdb|1RW4|A Chain A, Nitrogenase Fe Protein L127 Deletion Variant
Length = 272
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124
GKGG+GK++ +L A G +++ DP
Sbjct: 10 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 41
>pdb|3CWQ|A Chain A, Crystal Structure Of Chromosome Partitioning Protein
(Para) In Complex With Adp From Synechocystis Sp.
Northeast Structural Genomics Consortium Target Sgr89
pdb|3CWQ|B Chain B, Crystal Structure Of Chromosome Partitioning Protein
(Para) In Complex With Adp From Synechocystis Sp.
Northeast Structural Genomics Consortium Target Sgr89
Length = 209
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 94 KGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127
KGGVGKT+ A L+ A G T++I DP S
Sbjct: 9 KGGVGKTTTAVHLSAYLALQGE-TLLIDGDPNRS 41
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg-Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
++ GKGG GKT+ A+L+V G + + D
Sbjct: 7 IVSGKGGTGKTTVTANLSVALGEXGRKVLAVDGD 40
>pdb|3TK1|A Chain A, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
pdb|3TK1|B Chain B, Crystal Structure Of A Meab And Rv1496 Ortholog From
Mycobacterium Thermoresistible Bound To Gdp
Length = 330
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125
H + G GVGK++ +L + GH V++ DP+
Sbjct: 58 HVGITGVPGVGKSTSIEALGMHLIEQGHRVAVLAVDPS 95
>pdb|3KJE|A Chain A, Empty State Of Cooc1
pdb|3KJG|A Chain A, Adp-Bound State Of Cooc1
pdb|3KJG|B Chain B, Adp-Bound State Of Cooc1
pdb|3KJH|A Chain A, Zn-Bound State Of Cooc1
pdb|3KJI|A Chain A, Zn And Adp Bound State Of Cooc1
pdb|3KJI|B Chain B, Zn And Adp Bound State Of Cooc1
Length = 254
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 91 LGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFA 133
+ GKGGVGKT+ AA L A+ + DP L +
Sbjct: 5 VAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLG 47
>pdb|2BEK|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|B Chain B, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|C Chain C, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|D Chain D, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 18/120 (15%)
Query: 94 KGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTL-----VPVEGVD 148
KGGVGKT+ A +LA A G +++ P + + G P+EG+
Sbjct: 15 KGGVGKTTTAINLAAYLARLGKRVLLVDLAPQGNATSGLGVRAERGVYHLLQGEPLEGLV 74
Query: 149 SPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPP 208
P+ + P A + A+ G+ +++ + G ++ LLD PP
Sbjct: 75 HPVDGFHLLP--ATPDLVGATVELAGAPTALREALRDEGYDLV-----------LLDAPP 121
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
+ML G G GKT+ A +A +A G+ ++ + D
Sbjct: 108 FMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142
>pdb|1XD8|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD8|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD9|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
pdb|1XD9|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
Length = 289
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124
GKGG+GK++ +L A G +++ +P
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCNP 40
>pdb|2VED|A Chain A, Crystal Structure Of The Chimerical Mutant Capabk55m
Protein
pdb|2VED|B Chain B, Crystal Structure Of The Chimerical Mutant Capabk55m
Protein
Length = 271
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 96 GVGKTSCAASLAVKFANHGHPTIVISTD 123
G G ++ AA+LAV +A G+ T+++ D
Sbjct: 93 GAGMSTIAANLAVAYAQAGYKTLIVDGD 120
>pdb|3NXS|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM FROM
MYCOBACTERIUM Smegmatis Bound To Gdp
Length = 329
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125
H + G GVGK++ +L + GH V++ DP+
Sbjct: 59 HVGITGVPGVGKSTTIEALGMHLIEAGHRVAVLAVDPS 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,042,349
Number of Sequences: 62578
Number of extensions: 429196
Number of successful extensions: 1319
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1225
Number of HSP's gapped (non-prelim): 51
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)