Query 043873
Match_columns 413
No_of_seqs 340 out of 2486
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:07:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2825 Putative arsenite-tran 100.0 4.4E-55 9.5E-60 397.1 26.4 314 76-413 9-323 (323)
2 PF02374 ArsA_ATPase: Anion-tr 100.0 2.9E-54 6.3E-59 420.0 28.6 304 87-413 2-305 (305)
3 COG0003 ArsA Predicted ATPase 100.0 6E-47 1.3E-51 367.7 30.4 301 86-413 2-304 (322)
4 cd00550 ArsA_ATPase Oxyanion-t 100.0 7.5E-42 1.6E-46 325.7 27.8 252 88-408 2-253 (254)
5 TIGR00345 arsA arsenite-activa 100.0 5.6E-40 1.2E-44 317.5 29.7 284 102-411 1-284 (284)
6 cd02035 ArsA ArsA ATPase funct 100.0 1.4E-26 3.1E-31 215.7 22.2 213 88-390 1-216 (217)
7 KOG3022 Predicted ATPase, nucl 99.9 2.6E-26 5.7E-31 213.0 10.2 184 78-355 40-224 (300)
8 COG0489 Mrp ATPases involved i 99.9 2E-24 4.3E-29 206.5 16.1 177 84-356 56-233 (265)
9 PRK11670 antiporter inner memb 99.9 4.3E-24 9.4E-29 213.3 12.9 177 83-355 105-282 (369)
10 cd02037 MRP-like MRP (Multiple 99.9 2.7E-23 5.9E-28 186.0 13.1 166 87-393 1-167 (169)
11 TIGR03029 EpsG chain length de 99.9 3.8E-22 8.2E-27 192.3 14.5 190 66-351 79-274 (274)
12 CHL00175 minD septum-site dete 99.9 2.8E-22 6.2E-27 193.9 11.4 176 84-355 14-191 (281)
13 TIGR01969 minD_arch cell divis 99.9 1.9E-22 4.1E-27 191.2 7.9 172 86-355 1-173 (251)
14 COG0455 flhG Antiactivator of 99.9 9.3E-22 2E-26 187.0 12.5 230 85-411 2-238 (262)
15 TIGR01007 eps_fam capsular exo 99.9 2.5E-21 5.4E-26 178.5 15.0 179 83-356 15-194 (204)
16 PRK13869 plasmid-partitioning 99.9 9.4E-21 2E-25 191.8 18.2 197 84-356 120-328 (405)
17 TIGR03371 cellulose_yhjQ cellu 99.9 4.7E-21 1E-25 181.3 14.5 52 85-136 1-52 (246)
18 TIGR01281 DPOR_bchL light-inde 99.9 4.6E-22 1E-26 191.1 6.3 47 87-134 2-48 (268)
19 PRK13232 nifH nitrogenase redu 99.9 1.2E-21 2.7E-26 188.7 9.0 47 85-132 1-47 (273)
20 cd02117 NifH_like This family 99.9 4.7E-21 1E-25 177.9 12.2 47 86-133 1-47 (212)
21 COG2894 MinD Septum formation 99.8 1.3E-21 2.7E-26 176.0 7.7 176 86-356 3-186 (272)
22 PRK13236 nitrogenase reductase 99.8 2.8E-21 6E-26 188.3 10.2 239 83-412 4-251 (296)
23 TIGR03018 pepcterm_TyrKin exop 99.8 9.6E-21 2.1E-25 175.2 13.2 184 70-350 11-207 (207)
24 PRK13235 nifH nitrogenase redu 99.8 1.6E-21 3.4E-26 188.1 8.2 48 85-133 1-48 (274)
25 TIGR01968 minD_bact septum sit 99.8 4.1E-21 8.8E-26 183.0 10.9 173 86-355 2-176 (261)
26 PHA02518 ParA-like protein; Pr 99.8 1.7E-20 3.7E-25 173.2 14.6 50 86-135 1-50 (211)
27 PHA02519 plasmid partition pro 99.8 2.4E-20 5.1E-25 187.5 16.4 266 11-355 8-307 (387)
28 PRK13185 chlL protochlorophyll 99.8 4.2E-21 9E-26 184.6 10.2 48 86-134 3-50 (270)
29 PRK13705 plasmid-partitioning 99.8 4.7E-20 1E-24 185.6 18.1 267 11-355 8-307 (388)
30 PRK13233 nifH nitrogenase redu 99.8 1.5E-21 3.3E-26 188.2 6.8 49 86-135 3-53 (275)
31 cd02040 NifH NifH gene encodes 99.8 3.1E-21 6.7E-26 185.2 8.8 49 85-134 1-49 (270)
32 cd02032 Bchl_like This family 99.8 3.8E-21 8.3E-26 184.6 8.7 48 86-134 1-48 (267)
33 PRK10037 cell division protein 99.8 1.5E-20 3.2E-25 178.9 12.1 51 85-135 1-51 (250)
34 TIGR03453 partition_RepA plasm 99.8 4.1E-20 9E-25 186.6 15.2 53 84-136 103-155 (387)
35 TIGR01005 eps_transp_fam exopo 99.8 2.3E-20 5E-25 203.7 14.3 193 67-355 523-721 (754)
36 PRK13230 nitrogenase reductase 99.8 2.4E-21 5.2E-26 187.3 5.3 49 85-134 1-49 (279)
37 CHL00072 chlL photochlorophyll 99.8 1.1E-20 2.5E-25 183.3 9.1 230 88-411 3-243 (290)
38 PRK10818 cell division inhibit 99.8 1.5E-20 3.2E-25 180.8 9.7 52 85-136 2-54 (270)
39 PRK11519 tyrosine kinase; Prov 99.8 6.9E-20 1.5E-24 198.3 14.7 193 67-355 503-701 (719)
40 COG1192 Soj ATPases involved i 99.8 6.3E-20 1.4E-24 175.3 12.7 53 85-137 2-55 (259)
41 PRK09841 cryptic autophosphory 99.8 6.5E-20 1.4E-24 198.6 13.6 193 67-355 508-706 (726)
42 PRK13234 nifH nitrogenase redu 99.8 1.2E-20 2.6E-25 183.7 5.8 49 84-133 3-51 (295)
43 TIGR01287 nifH nitrogenase iro 99.8 3.7E-20 8.1E-25 178.5 8.9 47 86-133 1-47 (275)
44 PRK13849 putative crown gall t 99.8 3.5E-19 7.7E-24 167.2 14.9 51 85-135 1-51 (231)
45 cd03110 Fer4_NifH_child This p 99.8 6.8E-19 1.5E-23 158.8 12.9 154 87-355 1-156 (179)
46 cd02036 MinD Bacterial cell di 99.8 3.2E-19 6.9E-24 160.2 9.6 127 87-356 1-128 (179)
47 TIGR03815 CpaE_hom_Actino heli 99.8 6.2E-19 1.3E-23 173.9 12.4 54 84-137 92-146 (322)
48 PRK13231 nitrogenase reductase 99.8 1.5E-19 3.3E-24 173.2 6.4 47 85-133 2-48 (264)
49 TIGR02016 BchX chlorophyllide 99.8 5.2E-19 1.1E-23 172.1 9.1 46 86-132 1-46 (296)
50 PF01656 CbiA: CobQ/CobB/MinD/ 99.7 1.4E-17 3.1E-22 151.4 13.6 157 88-356 1-162 (195)
51 cd02033 BchX Chlorophyllide re 99.7 2.2E-18 4.8E-23 168.9 7.9 51 85-136 31-82 (329)
52 PF06564 YhjQ: YhjQ protein; 99.7 1.7E-17 3.7E-22 155.2 12.8 53 85-137 1-53 (243)
53 COG3640 CooC CO dehydrogenase 99.7 1.6E-17 3.4E-22 151.7 11.4 232 90-410 4-249 (255)
54 cd03111 CpaE_like This protein 99.7 4.4E-16 9.4E-21 128.7 12.4 40 87-126 1-41 (106)
55 cd02038 FleN-like FleN is a me 99.6 2.4E-15 5.2E-20 130.4 12.5 38 87-124 1-38 (139)
56 PF07015 VirC1: VirC1 protein; 99.6 2.9E-14 6.2E-19 131.7 17.8 52 85-136 1-52 (231)
57 PF09140 MipZ: ATPase MipZ; I 99.6 2.4E-16 5.2E-21 146.0 3.4 50 86-135 1-51 (261)
58 COG1149 MinD superfamily P-loo 99.6 1.3E-15 2.7E-20 142.1 8.0 52 85-137 1-53 (284)
59 cd02042 ParA ParA and ParB of 99.6 1.7E-14 3.7E-19 118.3 11.8 39 87-125 1-39 (104)
60 PF00142 Fer4_NifH: 4Fe-4S iro 99.5 4.5E-14 9.7E-19 132.2 6.9 48 86-134 1-49 (273)
61 PF13614 AAA_31: AAA domain; P 99.4 5.6E-13 1.2E-17 117.2 6.2 52 86-137 1-53 (157)
62 TIGR00064 ftsY signal recognit 99.3 4.3E-11 9.3E-16 115.1 15.4 40 85-125 72-111 (272)
63 COG4963 CpaE Flp pilus assembl 99.3 5.7E-11 1.2E-15 116.4 15.7 182 84-359 103-288 (366)
64 PRK13886 conjugal transfer pro 99.3 3.3E-10 7.2E-15 106.3 18.4 46 86-131 3-49 (241)
65 COG1348 NifH Nitrogenase subun 99.2 6.5E-11 1.4E-15 108.1 10.6 46 86-132 2-47 (278)
66 cd03114 ArgK-like The function 99.2 8.8E-11 1.9E-15 102.8 9.2 38 90-127 3-40 (148)
67 TIGR00347 bioD dethiobiotin sy 99.2 1.7E-10 3.7E-15 102.7 11.1 36 315-350 131-166 (166)
68 cd03115 SRP The signal recogni 99.2 1.3E-09 2.9E-14 97.6 16.7 39 88-126 2-40 (173)
69 PRK10867 signal recognition pa 99.2 6.6E-10 1.4E-14 113.0 15.6 42 86-127 100-142 (433)
70 TIGR00959 ffh signal recogniti 99.1 1.6E-09 3.5E-14 110.1 15.0 42 86-127 99-141 (428)
71 cd02034 CooC The accessory pro 99.1 4.6E-10 1E-14 94.1 8.8 47 89-136 2-48 (116)
72 PRK10416 signal recognition pa 99.1 4E-09 8.7E-14 103.6 16.3 42 85-127 114-155 (318)
73 PF10609 ParA: ParA/MinD ATPas 99.1 1.2E-10 2.7E-15 90.1 3.8 43 313-355 25-67 (81)
74 TIGR01425 SRP54_euk signal rec 99.0 4.2E-09 9.2E-14 106.6 15.3 41 87-127 101-141 (429)
75 PRK00771 signal recognition pa 99.0 1.2E-08 2.5E-13 104.1 16.1 40 87-126 96-135 (437)
76 PRK13768 GTPase; Provisional 99.0 2.2E-08 4.8E-13 95.5 16.9 42 86-127 2-43 (253)
77 cd01983 Fer4_NifH The Fer4_Nif 98.9 9.4E-09 2E-13 81.8 10.1 33 89-121 2-34 (99)
78 PRK12726 flagellar biosynthesi 98.9 2.3E-08 5E-13 99.2 14.8 42 85-127 206-247 (407)
79 PRK11889 flhF flagellar biosyn 98.9 3.8E-08 8.3E-13 98.0 14.0 40 86-126 242-281 (436)
80 PRK00090 bioD dithiobiotin syn 98.8 3.3E-07 7.2E-12 85.4 17.5 41 315-355 135-175 (222)
81 PRK12724 flagellar biosynthesi 98.8 1.2E-07 2.6E-12 95.5 13.7 44 86-129 223-267 (432)
82 PRK14974 cell division protein 98.7 1.3E-07 2.8E-12 93.4 13.6 40 86-125 140-179 (336)
83 PRK12727 flagellar biosynthesi 98.7 3.1E-07 6.8E-12 94.8 15.9 42 85-127 350-393 (559)
84 PF00448 SRP54: SRP54-type pro 98.7 4.5E-07 9.7E-12 83.2 14.2 39 88-126 3-41 (196)
85 PRK05703 flhF flagellar biosyn 98.7 2.1E-07 4.5E-12 95.1 12.3 40 86-126 222-263 (424)
86 COG0541 Ffh Signal recognition 98.6 1.2E-06 2.6E-11 87.6 14.4 41 86-126 100-140 (451)
87 PRK12723 flagellar biosynthesi 98.6 1.3E-06 2.8E-11 88.0 14.9 40 87-126 175-218 (388)
88 TIGR00750 lao LAO/AO transport 98.5 5.3E-06 1.2E-10 81.1 18.2 43 85-128 34-76 (300)
89 COG0552 FtsY Signal recognitio 98.4 7.6E-06 1.6E-10 79.5 15.3 38 87-124 140-177 (340)
90 PRK06731 flhF flagellar biosyn 98.4 5.9E-06 1.3E-10 79.3 14.3 40 86-126 76-115 (270)
91 PRK01077 cobyrinic acid a,c-di 98.4 8.9E-06 1.9E-10 84.0 15.2 40 85-124 3-42 (451)
92 cd03109 DTBS Dethiobiotin synt 98.3 7.9E-06 1.7E-10 70.3 11.5 41 315-355 70-110 (134)
93 PRK09435 membrane ATPase/prote 98.3 2.4E-05 5.1E-10 77.3 16.4 43 86-128 56-98 (332)
94 TIGR03499 FlhF flagellar biosy 98.3 2.6E-06 5.5E-11 82.6 8.2 40 86-126 195-236 (282)
95 COG1703 ArgK Putative periplas 98.2 4.1E-05 8.9E-10 73.3 15.5 51 84-135 50-102 (323)
96 PRK05632 phosphate acetyltrans 98.2 6.1E-06 1.3E-10 89.5 11.1 37 86-122 3-39 (684)
97 PRK14723 flhF flagellar biosyn 98.2 4.6E-05 9.9E-10 82.3 16.8 38 88-125 187-226 (767)
98 PF13500 AAA_26: AAA domain; P 98.2 9.4E-06 2E-10 74.4 9.2 41 315-355 131-171 (199)
99 COG0132 BioD Dethiobiotin synt 98.1 5.6E-05 1.2E-09 70.3 13.6 42 315-356 138-179 (223)
100 PRK14493 putative bifunctional 98.1 1.8E-05 3.9E-10 76.2 10.2 40 85-126 1-40 (274)
101 PRK06995 flhF flagellar biosyn 98.0 0.00012 2.6E-09 75.6 14.2 38 88-125 258-297 (484)
102 PF03308 ArgK: ArgK protein; 98.0 0.00016 3.4E-09 68.3 13.5 41 85-126 29-69 (266)
103 PRK14722 flhF flagellar biosyn 98.0 0.00015 3.3E-09 72.6 14.1 38 88-125 139-178 (374)
104 PRK12374 putative dithiobiotin 97.9 0.00044 9.5E-09 65.0 16.3 42 314-355 136-177 (231)
105 KOG0780 Signal recognition par 97.9 0.00019 4.1E-09 70.8 13.6 49 86-134 101-150 (483)
106 COG1797 CobB Cobyrinic acid a, 97.9 0.00012 2.5E-09 73.5 10.9 34 87-120 2-35 (451)
107 COG1419 FlhF Flagellar GTP-bin 97.8 0.0004 8.6E-09 69.5 14.2 39 85-124 203-243 (407)
108 cd01394 radB RadB. The archaea 97.7 6.3E-05 1.4E-09 69.8 6.4 53 72-124 3-57 (218)
109 PHA02542 41 41 helicase; Provi 97.7 0.00048 1E-08 71.4 13.0 64 69-132 171-237 (473)
110 PRK00784 cobyric acid synthase 97.7 0.0011 2.3E-08 69.3 15.1 37 85-121 2-38 (488)
111 TIGR00313 cobQ cobyric acid sy 97.6 0.0022 4.7E-08 66.8 17.0 35 88-122 1-35 (475)
112 PRK09361 radB DNA repair and r 97.6 0.00012 2.7E-09 68.2 6.5 54 70-123 5-60 (225)
113 PF03029 ATP_bind_1: Conserved 97.5 0.0011 2.3E-08 62.8 12.1 35 93-127 3-37 (238)
114 KOG0781 Signal recognition par 97.5 0.0011 2.4E-08 67.1 12.4 40 87-126 379-418 (587)
115 KOG1532 GTPase XAB1, interacts 97.4 0.00073 1.6E-08 64.0 8.1 41 86-126 19-59 (366)
116 PRK13505 formate--tetrahydrofo 97.3 0.00029 6.3E-09 72.9 5.6 52 84-137 54-108 (557)
117 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.00041 8.8E-09 66.5 5.9 53 71-123 5-73 (259)
118 PRK13896 cobyrinic acid a,c-di 97.2 0.0069 1.5E-07 62.1 14.5 36 86-121 2-37 (433)
119 cd00477 FTHFS Formyltetrahydro 97.2 0.00042 9.1E-09 71.0 5.6 53 84-138 37-92 (524)
120 TIGR00379 cobB cobyrinic acid 97.2 0.0063 1.4E-07 62.9 14.4 34 88-121 2-35 (449)
121 COG0529 CysC Adenylylsulfate k 97.2 0.0006 1.3E-08 60.6 5.1 49 86-134 23-72 (197)
122 COG0467 RAD55 RecA-superfamily 97.1 0.00082 1.8E-08 64.3 6.3 55 71-125 6-62 (260)
123 TIGR02237 recomb_radB DNA repa 97.1 0.0009 2E-08 61.6 6.0 47 78-124 2-50 (209)
124 PRK06067 flagellar accessory p 97.1 0.00084 1.8E-08 63.1 5.8 54 70-123 7-62 (234)
125 COG1341 Predicted GTPase or GT 97.1 0.0025 5.5E-08 63.6 9.1 39 86-125 74-112 (398)
126 KOG1534 Putative transcription 97.1 0.015 3.3E-07 53.2 13.1 41 86-126 3-43 (273)
127 PRK13506 formate--tetrahydrofo 97.0 0.00077 1.7E-08 69.7 5.2 53 84-138 53-108 (578)
128 PF06745 KaiC: KaiC; InterPro 97.0 0.00086 1.9E-08 62.6 5.2 53 72-124 3-58 (226)
129 PF01583 APS_kinase: Adenylyls 97.0 0.00082 1.8E-08 59.2 4.6 38 87-124 3-40 (156)
130 KOG1533 Predicted GTPase [Gene 97.0 0.0017 3.8E-08 60.1 6.6 39 91-129 7-46 (290)
131 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0015 3.2E-08 61.7 6.2 54 71-124 4-59 (237)
132 cd01122 GP4d_helicase GP4d_hel 97.0 0.00088 1.9E-08 64.2 4.7 56 69-124 12-69 (271)
133 PRK07667 uridine kinase; Provi 96.9 0.0015 3.3E-08 59.6 5.9 40 85-124 16-55 (193)
134 PF03205 MobB: Molybdopterin g 96.9 0.0018 3.8E-08 56.1 5.9 37 87-124 2-39 (140)
135 PRK05973 replicative DNA helic 96.9 0.0016 3.4E-08 61.5 5.8 39 86-124 64-102 (237)
136 PRK00889 adenylylsulfate kinas 96.9 0.0015 3.2E-08 58.4 5.0 38 88-125 6-43 (175)
137 TIGR02012 tigrfam_recA protein 96.8 0.0023 5.1E-08 62.9 6.5 55 69-123 35-92 (321)
138 TIGR03880 KaiC_arch_3 KaiC dom 96.8 0.0024 5.2E-08 59.5 6.3 52 73-124 1-54 (224)
139 PRK14721 flhF flagellar biosyn 96.8 0.035 7.6E-07 56.7 14.8 37 88-124 193-231 (420)
140 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.0026 5.6E-08 59.4 6.2 53 72-124 4-58 (229)
141 cd01124 KaiC KaiC is a circadi 96.8 0.0017 3.7E-08 58.3 4.8 36 89-124 2-37 (187)
142 PF03796 DnaB_C: DnaB-like hel 96.7 0.0025 5.3E-08 60.9 5.7 54 71-124 3-58 (259)
143 cd00983 recA RecA is a bacter 96.7 0.0032 6.8E-08 62.1 6.5 55 69-123 35-92 (325)
144 PRK04328 hypothetical protein; 96.7 0.003 6.4E-08 60.1 6.1 54 71-124 6-61 (249)
145 TIGR01618 phage_P_loop phage n 96.7 0.0041 9E-08 57.9 6.7 30 88-124 14-43 (220)
146 PRK06278 cobyrinic acid a,c-di 96.7 0.016 3.4E-07 60.2 11.6 40 315-354 352-395 (476)
147 PRK07952 DNA replication prote 96.7 0.002 4.4E-08 61.1 4.5 35 88-122 101-135 (244)
148 cd00984 DnaB_C DnaB helicase C 96.7 0.0035 7.5E-08 59.0 6.0 48 77-124 3-52 (242)
149 PRK06696 uridine kinase; Valid 96.6 0.0032 6.9E-08 58.8 5.5 41 84-124 20-60 (223)
150 PRK06526 transposase; Provisio 96.6 0.0013 2.8E-08 62.8 2.9 76 37-122 59-134 (254)
151 TIGR02655 circ_KaiC circadian 96.6 0.0035 7.6E-08 65.5 6.4 54 70-123 245-300 (484)
152 cd01120 RecA-like_NTPases RecA 96.6 0.0024 5.3E-08 55.2 4.4 38 89-126 2-39 (165)
153 PRK11823 DNA repair protein Ra 96.6 0.0043 9.3E-08 64.1 6.7 56 69-124 61-118 (446)
154 TIGR00416 sms DNA repair prote 96.6 0.0044 9.5E-08 64.1 6.6 56 68-123 74-131 (454)
155 PRK03846 adenylylsulfate kinas 96.6 0.0044 9.6E-08 56.7 6.0 39 87-125 25-63 (198)
156 cd01121 Sms Sms (bacterial rad 96.6 0.0049 1.1E-07 62.1 6.6 56 68-123 62-119 (372)
157 PF13245 AAA_19: Part of AAA d 96.5 0.0042 9.2E-08 47.8 4.7 36 88-123 12-51 (76)
158 TIGR03574 selen_PSTK L-seryl-t 96.5 0.0026 5.5E-08 60.4 4.2 37 88-124 1-37 (249)
159 TIGR03600 phage_DnaB phage rep 96.5 0.0046 9.9E-08 63.4 6.2 56 69-124 176-233 (421)
160 COG1484 DnaC DNA replication p 96.5 0.0029 6.2E-08 60.4 4.4 46 75-122 96-141 (254)
161 PRK09354 recA recombinase A; P 96.5 0.0049 1.1E-07 61.3 6.1 55 69-123 40-97 (349)
162 PLN02974 adenosylmethionine-8- 96.5 0.12 2.6E-06 57.2 17.3 68 315-400 216-283 (817)
163 cd02027 APSK Adenosine 5'-phos 96.5 0.0035 7.5E-08 54.8 4.3 36 89-124 2-37 (149)
164 cd01393 recA_like RecA is a b 96.4 0.0049 1.1E-07 57.3 5.5 53 72-124 3-63 (226)
165 PRK08181 transposase; Validate 96.4 0.0031 6.6E-08 60.7 4.1 74 40-122 69-142 (269)
166 cd03113 CTGs CTP synthetase (C 96.4 0.052 1.1E-06 51.0 12.1 40 88-127 3-43 (255)
167 cd02028 UMPK_like Uridine mono 96.4 0.0039 8.4E-08 56.3 4.5 36 89-124 2-37 (179)
168 PRK14494 putative molybdopteri 96.4 0.0071 1.5E-07 56.7 6.0 37 85-122 1-37 (229)
169 PF13207 AAA_17: AAA domain; P 96.3 0.0037 8E-08 51.9 3.7 28 88-118 1-28 (121)
170 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.0057 1.2E-07 57.2 5.1 53 72-124 3-63 (235)
171 PF13481 AAA_25: AAA domain; P 96.3 0.0051 1.1E-07 55.6 4.5 39 87-125 33-81 (193)
172 PRK06762 hypothetical protein; 96.3 0.0052 1.1E-07 54.3 4.4 36 86-124 2-37 (166)
173 TIGR02655 circ_KaiC circadian 96.3 0.0072 1.6E-07 63.2 6.0 53 71-123 4-59 (484)
174 PRK08533 flagellar accessory p 96.2 0.0077 1.7E-07 56.6 5.6 50 75-124 11-62 (230)
175 TIGR00176 mobB molybdopterin-g 96.2 0.0064 1.4E-07 53.6 4.6 34 90-123 3-36 (155)
176 PRK05595 replicative DNA helic 96.2 0.0082 1.8E-07 62.0 6.0 55 70-124 184-240 (444)
177 PRK08506 replicative DNA helic 96.2 0.0085 1.8E-07 62.4 6.0 56 70-125 175-231 (472)
178 TIGR00665 DnaB replicative DNA 96.2 0.0092 2E-07 61.4 6.2 56 70-125 178-235 (434)
179 PHA00729 NTP-binding motif con 96.2 0.0082 1.8E-07 56.0 5.2 25 87-111 18-42 (226)
180 PRK05748 replicative DNA helic 96.1 0.0096 2.1E-07 61.6 5.8 57 69-125 185-243 (448)
181 PRK08760 replicative DNA helic 96.0 0.01 2.2E-07 61.8 5.8 55 70-124 212-268 (476)
182 KOG0635 Adenosine 5'-phosphosu 96.0 0.014 3E-07 50.7 5.4 55 79-134 25-80 (207)
183 PRK09183 transposase/IS protei 96.0 0.0071 1.5E-07 57.9 4.2 33 90-122 106-138 (259)
184 PRK06749 replicative DNA helic 96.0 0.011 2.5E-07 60.6 5.8 56 69-124 168-224 (428)
185 PRK09302 circadian clock prote 96.0 0.014 2.9E-07 61.5 6.5 56 69-124 12-70 (509)
186 PF01695 IstB_IS21: IstB-like 95.9 0.0087 1.9E-07 54.0 4.3 34 89-122 50-83 (178)
187 PRK06321 replicative DNA helic 95.9 0.012 2.6E-07 61.1 5.9 56 69-124 208-265 (472)
188 PRK09165 replicative DNA helic 95.9 0.012 2.6E-07 61.7 5.6 56 69-124 199-270 (497)
189 PRK08006 replicative DNA helic 95.9 0.014 3E-07 60.7 6.0 56 69-124 206-263 (471)
190 TIGR03575 selen_PSTK_euk L-ser 95.8 0.009 1.9E-07 59.3 4.2 36 88-123 1-37 (340)
191 PRK05541 adenylylsulfate kinas 95.8 0.013 2.9E-07 52.3 5.0 38 87-124 8-45 (176)
192 cd03116 MobB Molybdenum is an 95.8 0.018 4E-07 50.9 5.7 39 86-125 2-40 (159)
193 PRK08840 replicative DNA helic 95.8 0.016 3.4E-07 60.2 5.9 56 69-124 199-256 (464)
194 TIGR00455 apsK adenylylsulfate 95.8 0.021 4.6E-07 51.4 6.0 39 86-124 18-56 (184)
195 COG4088 Predicted nucleotide k 95.7 0.0089 1.9E-07 54.6 3.4 37 88-124 3-39 (261)
196 cd00561 CobA_CobO_BtuR ATP:cor 95.7 0.016 3.5E-07 51.2 5.0 35 87-122 4-38 (159)
197 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.015 3.3E-07 53.9 5.1 50 74-123 26-75 (226)
198 PRK06904 replicative DNA helic 95.7 0.017 3.7E-07 60.1 5.9 56 69-124 203-260 (472)
199 PRK09302 circadian clock prote 95.7 0.019 4.1E-07 60.4 6.0 55 70-124 255-311 (509)
200 PRK12377 putative replication 95.7 0.015 3.2E-07 55.3 4.7 35 88-122 103-137 (248)
201 smart00382 AAA ATPases associa 95.6 0.0093 2E-07 49.5 3.0 37 88-124 4-40 (148)
202 cd04170 EF-G_bact Elongation f 95.6 0.11 2.3E-06 49.9 10.6 42 314-356 89-130 (268)
203 cd02019 NK Nucleoside/nucleoti 95.6 0.02 4.3E-07 43.1 4.3 32 89-122 2-33 (69)
204 TIGR02236 recomb_radA DNA repa 95.6 0.022 4.7E-07 55.9 5.7 55 70-124 77-139 (310)
205 PF13479 AAA_24: AAA domain 95.6 0.041 8.8E-07 51.0 7.2 30 88-125 5-34 (213)
206 PRK04296 thymidine kinase; Pro 95.6 0.021 4.5E-07 52.0 5.2 35 87-121 3-37 (190)
207 PRK05480 uridine/cytidine kina 95.5 0.025 5.5E-07 52.0 5.5 38 86-125 6-43 (209)
208 PRK14495 putative molybdopteri 95.4 0.021 4.5E-07 58.2 5.0 37 85-122 1-37 (452)
209 cd00544 CobU Adenosylcobinamid 95.4 0.4 8.7E-06 42.8 12.8 31 89-122 2-32 (169)
210 PRK08084 DNA replication initi 95.4 0.024 5.2E-07 53.4 5.1 51 74-124 33-83 (235)
211 cd00009 AAA The AAA+ (ATPases 95.4 0.031 6.7E-07 46.8 5.4 38 86-123 19-56 (151)
212 PRK05636 replicative DNA helic 95.3 0.024 5.3E-07 59.4 5.5 55 70-124 248-304 (505)
213 PRK15453 phosphoribulokinase; 95.3 0.028 6E-07 54.2 5.4 41 87-127 6-46 (290)
214 PLN03187 meiotic recombination 95.3 0.029 6.2E-07 55.9 5.7 55 69-123 107-169 (344)
215 PRK04301 radA DNA repair and r 95.3 0.029 6.3E-07 55.3 5.7 55 70-124 84-146 (317)
216 cd02029 PRK_like Phosphoribulo 95.3 0.023 5E-07 54.4 4.7 38 90-127 3-40 (277)
217 TIGR00708 cobA cob(I)alamin ad 95.3 0.028 6E-07 50.4 4.9 35 87-122 7-41 (173)
218 PRK07004 replicative DNA helic 95.3 0.025 5.3E-07 58.7 5.3 56 70-125 196-253 (460)
219 TIGR02238 recomb_DMC1 meiotic 95.3 0.026 5.5E-07 55.6 5.1 55 70-124 78-140 (313)
220 COG1066 Sms Predicted ATP-depe 95.3 0.033 7.2E-07 55.9 5.8 56 68-124 73-130 (456)
221 PRK08727 hypothetical protein; 95.2 0.024 5.2E-07 53.3 4.6 36 88-123 43-78 (233)
222 PRK08233 hypothetical protein; 95.2 0.017 3.6E-07 51.6 3.4 37 88-126 5-41 (182)
223 PRK05439 pantothenate kinase; 95.2 0.034 7.4E-07 54.6 5.8 41 85-125 85-127 (311)
224 cd01125 repA Hexameric Replica 95.1 0.027 5.9E-07 53.0 4.7 36 88-123 3-50 (239)
225 PRK09519 recA DNA recombinatio 95.1 0.041 8.9E-07 60.2 6.4 57 69-125 40-99 (790)
226 PF08433 KTI12: Chromatin asso 95.1 0.025 5.3E-07 54.5 4.2 36 88-123 3-38 (270)
227 COG4240 Predicted kinase [Gene 95.1 0.036 7.7E-07 51.5 5.0 39 85-123 49-88 (300)
228 PF00485 PRK: Phosphoribulokin 95.0 0.025 5.5E-07 51.4 4.0 37 88-124 1-41 (194)
229 PRK06835 DNA replication prote 95.0 0.026 5.5E-07 56.0 4.1 36 88-123 185-220 (329)
230 cd02023 UMPK Uridine monophosp 94.9 0.031 6.7E-07 50.9 4.3 34 89-124 2-35 (198)
231 KOG2749 mRNA cleavage and poly 94.9 0.046 9.9E-07 53.8 5.5 43 84-128 103-146 (415)
232 cd02025 PanK Pantothenate kina 94.9 0.035 7.6E-07 51.8 4.6 36 90-125 3-40 (220)
233 PRK00131 aroK shikimate kinase 94.9 0.03 6.6E-07 49.3 4.0 32 87-123 5-36 (175)
234 PRK10751 molybdopterin-guanine 94.9 0.048 1E-06 48.9 5.2 37 87-123 7-43 (173)
235 PRK06893 DNA replication initi 94.9 0.044 9.6E-07 51.4 5.2 37 87-123 40-76 (229)
236 PRK08939 primosomal protein Dn 94.8 0.035 7.6E-07 54.5 4.7 35 88-122 158-192 (306)
237 PTZ00035 Rad51 protein; Provis 94.8 0.047 1E-06 54.3 5.5 55 70-124 100-162 (337)
238 PRK05642 DNA replication initi 94.8 0.033 7.2E-07 52.4 4.2 36 88-123 47-82 (234)
239 COG1618 Predicted nucleotide k 94.8 0.033 7.1E-07 49.1 3.8 34 89-122 8-41 (179)
240 PF13604 AAA_30: AAA domain; P 94.8 0.041 8.9E-07 50.3 4.7 47 75-122 8-54 (196)
241 PRK08903 DnaA regulatory inact 94.8 0.04 8.7E-07 51.3 4.7 38 87-124 43-80 (227)
242 PRK00089 era GTPase Era; Revie 94.7 1.8 4E-05 41.7 16.4 40 314-354 86-125 (292)
243 PF13086 AAA_11: AAA domain; P 94.7 0.029 6.2E-07 51.6 3.4 35 88-122 19-61 (236)
244 PF00154 RecA: recA bacterial 94.6 0.095 2.1E-06 51.6 7.1 54 70-124 34-91 (322)
245 cd02021 GntK Gluconate kinase 94.6 0.033 7.2E-07 48.2 3.4 33 88-125 1-33 (150)
246 PF06418 CTP_synth_N: CTP synt 94.6 0.36 7.7E-06 45.9 10.3 43 86-128 2-45 (276)
247 PF12846 AAA_10: AAA-like doma 94.5 0.06 1.3E-06 51.7 5.4 39 90-130 5-43 (304)
248 TIGR00041 DTMP_kinase thymidyl 94.5 0.081 1.8E-06 47.8 5.9 36 87-122 4-39 (195)
249 PF13671 AAA_33: AAA domain; P 94.5 0.025 5.4E-07 48.3 2.3 32 88-124 1-32 (143)
250 cd01672 TMPK Thymidine monopho 94.4 0.054 1.2E-06 48.7 4.6 35 88-122 2-36 (200)
251 COG3598 RepA RecA-family ATPas 94.4 0.18 3.9E-06 49.2 8.2 35 76-112 81-115 (402)
252 PLN03186 DNA repair protein RA 94.4 0.063 1.4E-06 53.5 5.3 56 69-124 104-167 (342)
253 PRK12740 elongation factor G; 94.4 0.16 3.4E-06 55.4 8.8 41 314-355 85-125 (668)
254 PRK06851 hypothetical protein; 94.3 0.081 1.8E-06 53.1 5.9 40 83-122 211-250 (367)
255 PRK08116 hypothetical protein; 94.2 0.062 1.3E-06 51.7 4.6 35 88-122 116-150 (268)
256 COG1102 Cmk Cytidylate kinase 94.1 0.04 8.6E-07 48.5 2.9 23 88-110 2-24 (179)
257 PRK06921 hypothetical protein; 94.1 0.059 1.3E-06 51.8 4.4 35 88-122 119-154 (266)
258 PRK09270 nucleoside triphospha 94.1 0.087 1.9E-06 49.3 5.4 43 84-126 31-74 (229)
259 PF05729 NACHT: NACHT domain 94.1 0.05 1.1E-06 47.2 3.6 28 88-115 2-29 (166)
260 COG1763 MobB Molybdopterin-gua 94.1 0.07 1.5E-06 47.2 4.4 39 85-124 2-40 (161)
261 PF13173 AAA_14: AAA domain 94.1 0.069 1.5E-06 45.1 4.2 36 87-123 3-38 (128)
262 PRK07773 replicative DNA helic 94.0 0.067 1.4E-06 60.1 5.2 56 69-124 199-256 (886)
263 PF07728 AAA_5: AAA domain (dy 93.9 0.09 2E-06 44.8 4.7 43 90-135 3-45 (139)
264 COG1110 Reverse gyrase [DNA re 93.8 1 2.3E-05 50.1 13.4 35 86-121 98-132 (1187)
265 TIGR00682 lpxK tetraacyldisacc 93.8 0.087 1.9E-06 51.8 4.9 39 85-123 28-67 (311)
266 TIGR02640 gas_vesic_GvpN gas v 93.8 0.1 2.2E-06 50.0 5.2 42 91-135 26-67 (262)
267 COG0468 RecA RecA/RadA recombi 93.8 0.12 2.6E-06 49.9 5.7 55 69-123 41-97 (279)
268 PHA02530 pseT polynucleotide k 93.8 0.06 1.3E-06 52.3 3.7 35 86-124 2-36 (300)
269 PRK06547 hypothetical protein; 93.8 0.089 1.9E-06 47.1 4.5 34 85-123 14-47 (172)
270 PRK08118 topology modulation p 93.7 0.07 1.5E-06 47.5 3.7 23 87-110 3-25 (167)
271 PF06414 Zeta_toxin: Zeta toxi 93.7 0.072 1.6E-06 48.7 3.8 39 84-124 13-51 (199)
272 PRK00652 lpxK tetraacyldisacch 93.6 0.091 2E-06 52.0 4.7 39 86-124 50-89 (325)
273 PF13238 AAA_18: AAA domain; P 93.5 0.063 1.4E-06 44.6 3.0 22 89-110 1-22 (129)
274 PF13401 AAA_22: AAA domain; P 93.5 0.041 8.9E-07 46.1 1.8 38 86-123 4-46 (131)
275 PRK05506 bifunctional sulfate 93.5 0.11 2.4E-06 56.2 5.4 40 85-124 459-498 (632)
276 PRK10490 sensor protein KdpD; 93.4 1.7 3.7E-05 49.1 14.9 35 85-119 23-57 (895)
277 TIGR00554 panK_bact pantothena 93.3 0.16 3.4E-06 49.5 5.7 41 86-126 62-104 (290)
278 PLN02796 D-glycerate 3-kinase 93.3 0.12 2.5E-06 51.4 4.8 39 86-124 100-138 (347)
279 TIGR00235 udk uridine kinase. 93.3 0.12 2.5E-06 47.6 4.6 38 86-125 6-43 (207)
280 COG2403 Predicted GTPase [Gene 93.3 0.14 3.1E-06 50.7 5.2 45 78-122 119-163 (449)
281 PRK12339 2-phosphoglycerate ki 93.1 0.095 2.1E-06 48.1 3.7 33 87-123 4-36 (197)
282 PLN03046 D-glycerate 3-kinase; 93.1 0.14 3E-06 52.2 5.1 40 85-124 211-250 (460)
283 TIGR02239 recomb_RAD51 DNA rep 93.1 0.15 3.3E-06 50.3 5.4 55 70-124 78-140 (316)
284 PF00004 AAA: ATPase family as 93.1 0.12 2.5E-06 43.1 4.0 31 90-123 2-32 (132)
285 cd02024 NRK1 Nicotinamide ribo 93.1 0.091 2E-06 47.8 3.4 32 89-124 2-33 (187)
286 PRK05986 cob(I)alamin adenolsy 93.1 0.14 3.1E-06 46.5 4.7 34 88-122 25-58 (191)
287 PRK06217 hypothetical protein; 93.0 0.12 2.5E-06 46.6 4.1 31 89-124 4-34 (183)
288 COG1072 CoaA Panthothenate kin 93.0 0.19 4E-06 48.1 5.5 49 84-132 80-130 (283)
289 PRK05537 bifunctional sulfate 92.9 0.12 2.5E-06 55.2 4.5 38 87-124 393-431 (568)
290 PRK04220 2-phosphoglycerate ki 92.9 0.19 4.1E-06 49.0 5.6 37 84-124 90-126 (301)
291 cd00881 GTP_translation_factor 92.9 1.6 3.5E-05 38.3 11.4 41 314-355 87-127 (189)
292 TIGR01313 therm_gnt_kin carboh 92.8 0.097 2.1E-06 45.9 3.3 31 90-125 2-32 (163)
293 COG1159 Era GTPase [General fu 92.8 5.5 0.00012 38.7 15.2 49 304-355 79-127 (298)
294 PF09848 DUF2075: Uncharacteri 92.8 0.13 2.9E-06 51.4 4.5 38 86-123 1-40 (352)
295 PRK06761 hypothetical protein; 92.8 0.13 2.7E-06 49.9 4.1 38 87-124 4-42 (282)
296 PF01935 DUF87: Domain of unkn 92.6 0.2 4.3E-06 46.6 5.2 35 88-123 26-61 (229)
297 PRK13808 adenylate kinase; Pro 92.6 2.1 4.5E-05 42.5 12.5 19 92-110 6-24 (333)
298 PRK07261 topology modulation p 92.6 0.15 3.2E-06 45.5 4.1 26 93-123 7-32 (171)
299 PTZ00301 uridine kinase; Provi 92.5 0.23 5E-06 46.0 5.4 38 87-124 4-43 (210)
300 cd04165 GTPBP1_like GTPBP1-lik 92.5 9.1 0.0002 35.7 16.9 40 314-354 111-150 (224)
301 COG2874 FlaH Predicted ATPases 92.4 9.1 0.0002 35.6 15.5 49 75-123 15-65 (235)
302 COG0504 PyrG CTP synthase (UTP 92.4 1.1 2.4E-05 46.1 10.4 42 86-127 2-44 (533)
303 TIGR00376 DNA helicase, putati 92.4 0.16 3.5E-06 54.9 4.8 34 88-121 175-208 (637)
304 PF08423 Rad51: Rad51; InterP 92.4 0.11 2.4E-06 49.6 3.2 58 70-127 20-85 (256)
305 PRK01906 tetraacyldisaccharide 92.3 0.2 4.4E-06 49.7 5.1 38 86-123 57-95 (338)
306 PF03266 NTPase_1: NTPase; In 92.3 0.14 3.1E-06 45.6 3.6 30 89-118 2-31 (168)
307 PRK07933 thymidylate kinase; V 92.3 0.2 4.4E-06 46.4 4.8 35 88-122 2-36 (213)
308 PRK13946 shikimate kinase; Pro 92.3 0.16 3.5E-06 45.8 4.0 31 88-123 12-42 (184)
309 COG0305 DnaB Replicative DNA h 92.2 0.28 6.1E-06 50.2 6.0 56 68-123 177-234 (435)
310 TIGR00337 PyrG CTP synthase. C 92.1 1.8 3.9E-05 45.4 11.8 42 86-127 2-44 (525)
311 PRK03839 putative kinase; Prov 92.1 0.18 3.8E-06 45.2 4.0 30 89-123 3-32 (180)
312 PRK00698 tmk thymidylate kinas 92.0 0.27 5.9E-06 44.6 5.2 35 87-121 4-38 (205)
313 PF00931 NB-ARC: NB-ARC domain 92.0 0.16 3.4E-06 48.7 3.8 45 84-128 17-63 (287)
314 PRK05380 pyrG CTP synthetase; 92.0 1.5 3.3E-05 46.0 11.1 42 86-127 3-45 (533)
315 PLN02327 CTP synthase 91.9 2.1 4.6E-05 45.1 12.1 42 86-127 2-44 (557)
316 PRK06851 hypothetical protein; 91.9 0.37 8E-06 48.4 6.4 41 84-124 28-70 (367)
317 TIGR00436 era GTP-binding prot 91.9 1.7 3.7E-05 41.6 10.8 39 314-354 81-119 (270)
318 PF02606 LpxK: Tetraacyldisacc 91.6 0.24 5.2E-06 49.1 4.6 39 85-123 35-74 (326)
319 PF13191 AAA_16: AAA ATPase do 91.5 0.28 6.1E-06 43.4 4.6 41 86-126 24-64 (185)
320 cd02020 CMPK Cytidine monophos 91.4 0.16 3.5E-06 43.3 2.8 31 88-123 1-31 (147)
321 TIGR00073 hypB hydrogenase acc 91.3 0.46 1E-05 43.6 5.9 45 80-125 16-60 (207)
322 PLN02924 thymidylate kinase 91.2 0.36 7.9E-06 45.0 5.2 36 86-121 16-51 (220)
323 PRK12338 hypothetical protein; 91.2 0.23 4.9E-06 48.9 4.0 33 87-123 5-37 (319)
324 TIGR02880 cbbX_cfxQ probable R 91.1 0.24 5.1E-06 48.1 4.0 28 88-115 60-87 (284)
325 PRK13947 shikimate kinase; Pro 91.0 0.26 5.6E-06 43.5 3.9 31 89-124 4-34 (171)
326 cd00227 CPT Chloramphenicol (C 90.9 0.22 4.8E-06 44.4 3.4 33 88-123 4-36 (175)
327 cd00046 DEXDc DEAD-like helica 90.8 0.39 8.5E-06 39.5 4.6 33 89-121 3-37 (144)
328 PF00910 RNA_helicase: RNA hel 90.7 0.22 4.7E-06 40.7 2.9 24 90-113 2-25 (107)
329 cd01131 PilT Pilus retraction 90.7 0.44 9.5E-06 43.6 5.1 34 88-121 3-37 (198)
330 cd04167 Snu114p Snu114p subfam 90.6 1.1 2.3E-05 41.3 7.7 40 314-354 96-135 (213)
331 KOG0744 AAA+-type ATPase [Post 90.5 0.23 4.9E-06 48.6 3.1 50 86-135 177-230 (423)
332 PRK13973 thymidylate kinase; P 90.5 0.45 9.7E-06 44.0 5.1 35 87-121 4-38 (213)
333 PRK12422 chromosomal replicati 90.5 0.29 6.3E-06 50.6 4.1 35 89-123 144-178 (445)
334 COG2074 2-phosphoglycerate kin 90.4 0.33 7.1E-06 45.9 3.9 35 85-123 88-122 (299)
335 COG1936 Predicted nucleotide k 90.2 0.32 6.9E-06 43.4 3.6 26 89-118 3-28 (180)
336 COG0572 Udk Uridine kinase [Nu 90.2 0.37 8.1E-06 44.7 4.2 37 87-125 9-45 (218)
337 PF00009 GTP_EFTU: Elongation 90.2 9 0.00019 34.2 13.3 86 314-406 95-180 (188)
338 PRK03731 aroL shikimate kinase 90.2 0.37 8E-06 42.6 4.1 30 89-123 5-34 (171)
339 PF02562 PhoH: PhoH-like prote 90.2 0.33 7.1E-06 44.8 3.8 34 87-120 20-55 (205)
340 PRK04040 adenylate kinase; Pro 90.2 0.3 6.6E-06 44.3 3.6 25 87-111 3-27 (188)
341 PRK13948 shikimate kinase; Pro 90.2 0.4 8.7E-06 43.3 4.4 32 87-123 11-42 (182)
342 CHL00181 cbbX CbbX; Provisiona 90.2 0.33 7.2E-06 47.2 4.1 27 89-115 62-88 (287)
343 PRK13949 shikimate kinase; Pro 90.1 0.36 7.8E-06 43.0 4.0 30 88-123 4-33 (169)
344 TIGR01359 UMP_CMP_kin_fam UMP- 90.1 0.23 5E-06 44.3 2.7 29 89-122 2-30 (183)
345 PRK00411 cdc6 cell division co 90.1 0.62 1.3E-05 47.0 6.2 41 87-127 56-98 (394)
346 TIGR00362 DnaA chromosomal rep 90.1 0.32 7E-06 49.5 4.1 36 88-123 138-175 (405)
347 PLN02348 phosphoribulokinase 90.0 0.56 1.2E-05 47.4 5.5 44 84-127 47-105 (395)
348 PRK14489 putative bifunctional 89.9 0.46 1E-05 47.8 5.0 39 85-124 205-243 (366)
349 cd01129 PulE-GspE PulE/GspE Th 89.8 0.43 9.3E-06 45.8 4.5 45 76-121 71-115 (264)
350 COG2256 MGS1 ATPase related to 89.8 0.34 7.4E-06 48.7 3.8 35 75-109 37-71 (436)
351 PRK10463 hydrogenase nickel in 89.7 0.57 1.2E-05 45.5 5.2 46 79-125 97-142 (290)
352 cd00464 SK Shikimate kinase (S 89.6 0.4 8.7E-06 41.2 3.8 29 90-123 3-31 (154)
353 PF07724 AAA_2: AAA domain (Cd 89.6 0.51 1.1E-05 42.2 4.5 38 86-123 3-41 (171)
354 TIGR01650 PD_CobS cobaltochela 89.4 0.52 1.1E-05 46.5 4.7 44 89-135 67-110 (327)
355 PRK00091 miaA tRNA delta(2)-is 89.3 0.41 8.9E-06 47.0 4.0 34 86-124 4-37 (307)
356 TIGR02881 spore_V_K stage V sp 89.3 0.37 8E-06 46.0 3.6 27 88-114 44-70 (261)
357 COG0703 AroK Shikimate kinase 89.2 0.34 7.5E-06 43.3 3.1 38 93-135 9-52 (172)
358 PRK14528 adenylate kinase; Pro 89.2 0.54 1.2E-05 42.5 4.4 22 89-110 4-25 (186)
359 PLN02200 adenylate kinase fami 89.2 0.4 8.7E-06 45.1 3.7 25 86-110 43-67 (234)
360 PLN03025 replication factor C 89.2 0.59 1.3E-05 46.0 5.1 47 76-122 24-70 (319)
361 PLN02165 adenylate isopentenyl 89.1 0.83 1.8E-05 45.2 5.9 34 86-124 43-76 (334)
362 COG1855 ATPase (PilT family) [ 89.1 0.39 8.4E-06 49.0 3.6 43 78-121 256-298 (604)
363 PRK00625 shikimate kinase; Pro 89.0 0.43 9.2E-06 42.8 3.6 30 89-123 3-32 (173)
364 PF00437 T2SE: Type II/IV secr 88.8 0.45 9.7E-06 45.5 3.8 38 85-122 126-163 (270)
365 TIGR00503 prfC peptide chain r 88.8 3.6 7.8E-05 43.5 10.8 42 313-355 104-145 (527)
366 COG0563 Adk Adenylate kinase a 88.7 0.43 9.3E-06 43.0 3.4 17 93-109 7-23 (178)
367 PRK01184 hypothetical protein; 88.7 0.5 1.1E-05 42.3 3.9 29 88-122 3-31 (184)
368 PRK15494 era GTPase Era; Provi 88.7 4.3 9.3E-05 40.4 10.8 17 91-107 57-73 (339)
369 PRK08356 hypothetical protein; 88.7 0.61 1.3E-05 42.4 4.5 26 87-116 6-31 (195)
370 PRK14730 coaE dephospho-CoA ki 88.7 0.56 1.2E-05 42.8 4.2 31 88-123 3-33 (195)
371 PRK14532 adenylate kinase; Pro 88.7 0.48 1.1E-05 42.5 3.8 29 90-123 4-32 (188)
372 cd01428 ADK Adenylate kinase ( 88.7 0.55 1.2E-05 42.1 4.1 29 90-123 3-31 (194)
373 PRK00149 dnaA chromosomal repl 88.6 0.45 9.8E-06 49.2 4.0 36 88-123 150-187 (450)
374 TIGR02782 TrbB_P P-type conjug 88.4 0.54 1.2E-05 46.0 4.2 34 88-121 134-169 (299)
375 PRK02496 adk adenylate kinase; 88.4 0.51 1.1E-05 42.3 3.7 21 90-110 5-25 (184)
376 PRK14531 adenylate kinase; Pro 88.4 0.49 1.1E-05 42.5 3.6 22 89-110 5-26 (183)
377 PLN03126 Elongation factor Tu; 88.4 6.4 0.00014 41.1 12.3 41 314-354 169-209 (478)
378 PRK12402 replication factor C 88.3 0.66 1.4E-05 45.6 4.7 48 75-122 25-74 (337)
379 TIGR01360 aden_kin_iso1 adenyl 88.2 0.53 1.1E-05 42.0 3.7 23 88-110 5-27 (188)
380 PRK13975 thymidylate kinase; P 88.2 0.53 1.2E-05 42.5 3.7 25 87-111 3-27 (196)
381 PF05496 RuvB_N: Holliday junc 88.0 0.38 8.2E-06 44.9 2.6 32 88-122 52-83 (233)
382 PRK14088 dnaA chromosomal repl 87.9 0.53 1.2E-05 48.6 3.9 35 89-123 133-169 (440)
383 PRK14527 adenylate kinase; Pro 87.9 0.55 1.2E-05 42.4 3.6 23 88-110 8-30 (191)
384 PRK09866 hypothetical protein; 87.9 11 0.00025 40.7 13.6 41 314-354 260-301 (741)
385 PRK14491 putative bifunctional 87.8 0.92 2E-05 48.7 5.7 38 85-123 10-47 (597)
386 COG1663 LpxK Tetraacyldisaccha 87.7 0.59 1.3E-05 46.0 3.9 41 86-126 48-89 (336)
387 cd02022 DPCK Dephospho-coenzym 87.7 0.57 1.2E-05 42.0 3.6 29 89-123 2-30 (179)
388 PF01268 FTHFS: Formate--tetra 87.6 1.1 2.4E-05 47.0 5.9 52 84-137 53-107 (557)
389 TIGR02322 phosphon_PhnN phosph 87.5 0.51 1.1E-05 42.0 3.1 25 88-112 3-27 (179)
390 smart00763 AAA_PrkA PrkA AAA d 87.5 0.61 1.3E-05 46.6 3.9 28 85-112 77-104 (361)
391 PF05970 PIF1: PIF1-like helic 87.4 0.68 1.5E-05 46.6 4.3 52 86-137 22-81 (364)
392 PF01580 FtsK_SpoIIIE: FtsK/Sp 87.4 0.59 1.3E-05 42.7 3.5 36 90-125 42-79 (205)
393 PTZ00088 adenylate kinase 1; P 87.4 0.62 1.3E-05 43.8 3.7 28 91-123 11-38 (229)
394 PRK13695 putative NTPase; Prov 87.4 0.9 1.9E-05 40.4 4.6 29 90-118 4-32 (174)
395 PF13521 AAA_28: AAA domain; P 87.3 0.52 1.1E-05 41.3 3.0 20 90-109 3-22 (163)
396 PRK13764 ATPase; Provisional 87.3 0.71 1.5E-05 49.4 4.4 34 88-121 259-292 (602)
397 PRK05057 aroK shikimate kinase 87.2 0.73 1.6E-05 41.1 3.9 31 89-124 7-37 (172)
398 PRK00081 coaE dephospho-CoA ki 87.2 0.76 1.6E-05 41.8 4.1 31 87-123 3-33 (194)
399 PRK10536 hypothetical protein; 87.2 1.2 2.7E-05 42.4 5.6 46 88-134 76-122 (262)
400 COG0237 CoaE Dephospho-CoA kin 87.0 0.91 2E-05 41.7 4.5 30 88-123 4-33 (201)
401 PLN03127 Elongation factor Tu; 86.9 4.9 0.00011 41.7 10.3 41 314-354 149-189 (447)
402 PRK00440 rfc replication facto 86.9 0.91 2E-05 44.1 4.8 50 74-123 26-75 (319)
403 PF02492 cobW: CobW/HypB/UreG, 86.9 0.98 2.1E-05 40.4 4.6 37 88-125 2-38 (178)
404 COG3265 GntK Gluconate kinase 86.7 0.36 7.7E-06 42.0 1.5 34 93-131 2-38 (161)
405 COG0194 Gmk Guanylate kinase [ 86.7 0.62 1.3E-05 42.1 3.1 25 86-110 4-28 (191)
406 KOG3062 RNA polymerase II elon 86.7 0.93 2E-05 42.2 4.3 34 88-121 3-38 (281)
407 COG0125 Tmk Thymidylate kinase 86.6 1.3 2.7E-05 41.1 5.2 37 86-122 3-39 (208)
408 PRK13976 thymidylate kinase; P 86.4 1 2.2E-05 41.7 4.5 33 88-120 2-36 (209)
409 PRK14490 putative bifunctional 86.4 1.1 2.4E-05 45.1 5.1 35 88-123 7-41 (369)
410 PF00308 Bac_DnaA: Bacterial d 86.3 0.72 1.6E-05 42.9 3.5 35 89-123 37-73 (219)
411 PF05707 Zot: Zonular occluden 86.2 0.62 1.3E-05 42.3 3.0 35 88-123 2-37 (193)
412 PRK04182 cytidylate kinase; Pr 86.2 0.65 1.4E-05 41.0 3.0 30 88-122 2-31 (180)
413 TIGR02928 orc1/cdc6 family rep 86.2 1.5 3.3E-05 43.6 6.0 38 87-124 41-84 (365)
414 KOG3347 Predicted nucleotide k 86.1 0.64 1.4E-05 40.6 2.7 18 91-108 12-29 (176)
415 PF13555 AAA_29: P-loop contai 85.8 1.1 2.3E-05 33.1 3.4 24 88-111 25-48 (62)
416 PRK04195 replication factor C 85.7 1.1 2.5E-05 46.7 5.0 35 86-123 39-73 (482)
417 PRK14733 coaE dephospho-CoA ki 85.5 1.1 2.4E-05 41.3 4.2 32 87-123 7-38 (204)
418 PRK07414 cob(I)yrinic acid a,c 85.3 1.1 2.4E-05 40.3 4.0 34 88-122 24-57 (178)
419 TIGR00484 EF-G translation elo 85.2 4.6 9.9E-05 44.2 9.6 41 314-355 100-140 (689)
420 TIGR00152 dephospho-CoA kinase 85.2 0.88 1.9E-05 41.0 3.4 30 89-123 2-31 (188)
421 PRK07429 phosphoribulokinase; 85.1 0.99 2.2E-05 44.7 4.0 39 86-126 8-46 (327)
422 TIGR03783 Bac_Flav_CT_G Bacter 85.1 1.1 2.3E-05 50.1 4.6 44 90-133 442-486 (829)
423 TIGR03346 chaperone_ClpB ATP-d 85.0 1.4 3E-05 49.4 5.6 49 87-135 596-647 (852)
424 PRK13342 recombination factor 85.0 0.99 2.1E-05 46.2 4.1 34 77-110 27-60 (413)
425 PRK11545 gntK gluconate kinase 85.0 0.91 2E-05 40.1 3.4 29 93-126 2-30 (163)
426 TIGR03015 pepcterm_ATPase puta 85.0 0.7 1.5E-05 43.9 2.8 24 88-111 45-68 (269)
427 PRK14530 adenylate kinase; Pro 84.9 0.89 1.9E-05 41.9 3.4 21 90-110 7-27 (215)
428 TIGR01351 adk adenylate kinase 84.9 0.75 1.6E-05 42.3 2.9 20 91-110 4-23 (210)
429 TIGR02768 TraA_Ti Ti-type conj 84.9 1.1 2.4E-05 49.5 4.5 34 88-121 370-403 (744)
430 cd02026 PRK Phosphoribulokinas 84.8 0.62 1.3E-05 44.9 2.4 33 90-124 3-35 (273)
431 KOG0991 Replication factor C, 84.8 0.95 2.1E-05 42.5 3.4 40 84-123 46-85 (333)
432 PF10662 PduV-EutP: Ethanolami 84.7 0.91 2E-05 39.4 3.1 38 316-354 93-131 (143)
433 PRK12337 2-phosphoglycerate ki 84.7 1.1 2.3E-05 46.4 4.1 36 85-124 254-289 (475)
434 PF10443 RNA12: RNA12 protein; 84.7 0.78 1.7E-05 46.7 3.1 49 73-124 4-52 (431)
435 TIGR02173 cyt_kin_arch cytidyl 84.6 0.81 1.8E-05 40.1 2.9 31 88-123 2-32 (171)
436 PRK05800 cobU adenosylcobinami 84.6 1.1 2.4E-05 39.9 3.7 32 88-122 3-34 (170)
437 PRK00279 adk adenylate kinase; 84.6 0.86 1.9E-05 42.0 3.1 28 90-122 4-31 (215)
438 TIGR00635 ruvB Holliday juncti 84.5 1.5 3.2E-05 42.6 4.9 32 89-123 33-64 (305)
439 PF02572 CobA_CobO_BtuR: ATP:c 84.3 0.95 2.1E-05 40.5 3.1 34 88-122 6-39 (172)
440 PRK14734 coaE dephospho-CoA ki 84.2 1.4 3E-05 40.4 4.3 30 88-123 3-32 (200)
441 TIGR03263 guanyl_kin guanylate 84.1 0.87 1.9E-05 40.4 2.9 23 88-110 3-25 (180)
442 PLN02422 dephospho-CoA kinase 84.1 1.3 2.8E-05 41.7 4.0 30 88-123 3-32 (232)
443 PF00580 UvrD-helicase: UvrD/R 83.9 2 4.3E-05 41.3 5.5 35 88-123 16-54 (315)
444 PF03193 DUF258: Protein of un 83.7 1.2 2.7E-05 39.4 3.5 35 72-109 24-58 (161)
445 PRK10865 protein disaggregatio 83.7 1.2 2.6E-05 50.0 4.3 36 88-123 201-243 (857)
446 KOG2028 ATPase related to the 83.7 1.2 2.5E-05 44.5 3.6 38 76-113 152-189 (554)
447 COG0378 HypB Ni2+-binding GTPa 83.6 2.5 5.5E-05 38.5 5.6 39 87-126 14-52 (202)
448 COG0857 Pta BioD-like N-termin 83.6 1.7 3.7E-05 43.5 4.9 37 85-121 2-38 (354)
449 KOG2878 Predicted kinase [Gene 83.4 1.2 2.7E-05 40.7 3.5 38 86-123 31-71 (282)
450 PRK14086 dnaA chromosomal repl 83.4 1.2 2.6E-05 47.7 3.9 35 89-123 317-353 (617)
451 PRK08154 anaerobic benzoate ca 83.4 1.1 2.4E-05 43.9 3.5 32 87-123 134-165 (309)
452 PRK10078 ribose 1,5-bisphospho 83.3 1 2.2E-05 40.5 3.0 22 88-109 4-25 (186)
453 TIGR01420 pilT_fam pilus retra 83.3 2 4.3E-05 42.8 5.3 44 76-120 113-157 (343)
454 PTZ00451 dephospho-CoA kinase; 83.2 1.4 3E-05 41.8 4.0 31 88-123 3-33 (244)
455 PF01202 SKI: Shikimate kinase 83.2 0.85 1.9E-05 39.9 2.4 25 95-124 1-25 (158)
456 TIGR03754 conj_TOL_TraD conjug 83.1 1.7 3.7E-05 46.8 5.0 40 85-126 181-220 (643)
457 COG2909 MalT ATP-dependent tra 83.1 3.8 8.2E-05 45.1 7.5 47 80-127 31-77 (894)
458 PRK14738 gmk guanylate kinase; 83.1 1.2 2.7E-05 40.8 3.5 22 86-107 13-34 (206)
459 PLN02318 phosphoribulokinase/u 83.1 1.5 3.3E-05 46.7 4.5 39 84-126 63-101 (656)
460 TIGR03172 probable selenium-de 83.1 1.1 2.4E-05 42.1 3.2 28 95-122 6-33 (232)
461 PLN02840 tRNA dimethylallyltra 83.1 1.4 3E-05 45.1 4.1 34 86-124 21-54 (421)
462 KOG3354 Gluconate kinase [Carb 83.0 1.5 3.3E-05 38.6 3.7 38 88-130 14-51 (191)
463 PRK14731 coaE dephospho-CoA ki 82.9 1.7 3.7E-05 40.0 4.3 31 87-123 6-36 (208)
464 KOG1969 DNA replication checkp 82.8 1.4 3E-05 47.6 4.1 38 83-123 323-360 (877)
465 TIGR02746 TraC-F-type type-IV 82.7 1.6 3.5E-05 48.5 4.8 45 89-133 433-478 (797)
466 cd01884 EF_Tu EF-Tu subfamily. 82.4 32 0.0007 31.2 12.5 41 314-354 90-130 (195)
467 smart00487 DEXDc DEAD-like hel 82.1 1.8 4E-05 37.8 4.2 35 88-122 26-62 (201)
468 PF02223 Thymidylate_kin: Thym 82.1 1.3 2.9E-05 39.6 3.3 32 93-125 3-34 (186)
469 TIGR00017 cmk cytidylate kinas 82.0 1.5 3.3E-05 40.7 3.7 25 86-110 2-26 (217)
470 PF07726 AAA_3: ATPase family 81.8 0.98 2.1E-05 38.5 2.1 43 90-135 3-45 (131)
471 PF01745 IPT: Isopentenyl tran 81.7 2 4.3E-05 39.9 4.2 32 88-122 3-34 (233)
472 TIGR02524 dot_icm_DotB Dot/Icm 81.6 2.4 5.3E-05 42.5 5.2 47 77-124 126-174 (358)
473 TIGR03346 chaperone_ClpB ATP-d 81.6 1.6 3.5E-05 48.9 4.3 41 83-123 191-238 (852)
474 COG3973 Superfamily I DNA and 81.4 2.1 4.6E-05 45.3 4.7 41 83-123 223-269 (747)
475 cd01918 HprK_C HprK/P, the bif 81.3 1.3 2.9E-05 38.6 2.8 25 88-116 16-40 (149)
476 COG2109 BtuR ATP:corrinoid ade 81.3 2.1 4.5E-05 38.8 4.1 34 88-122 31-64 (198)
477 PF01591 6PF2K: 6-phosphofruct 81.2 2.8 6.1E-05 39.2 5.1 40 84-123 10-49 (222)
478 cd01886 EF-G Elongation factor 81.1 5.1 0.00011 38.5 7.0 41 314-355 89-129 (270)
479 PRK00080 ruvB Holliday junctio 81.0 1.3 2.9E-05 43.6 3.1 33 88-123 53-85 (328)
480 PRK14087 dnaA chromosomal repl 80.9 1.6 3.5E-05 45.2 3.8 35 89-123 144-180 (450)
481 PRK13833 conjugal transfer pro 80.9 1.9 4.1E-05 42.7 4.0 34 88-121 146-181 (323)
482 PRK13721 conjugal transfer ATP 80.9 1.8 3.8E-05 48.6 4.3 46 89-134 452-498 (844)
483 PLN02748 tRNA dimethylallyltra 80.9 1.9 4.1E-05 44.8 4.2 31 88-123 24-54 (468)
484 cd04163 Era Era subfamily. Er 80.9 2.5 5.3E-05 35.9 4.4 40 314-354 84-123 (168)
485 COG3854 SpoIIIAA ncharacterize 80.7 2.9 6.4E-05 39.3 4.9 35 89-123 140-179 (308)
486 PF04665 Pox_A32: Poxvirus A32 80.7 2.6 5.6E-05 39.9 4.7 39 81-121 10-48 (241)
487 TIGR01447 recD exodeoxyribonuc 80.6 2.1 4.6E-05 45.8 4.6 28 86-113 160-187 (586)
488 cd00820 PEPCK_HprK Phosphoenol 80.5 2.6 5.6E-05 34.7 4.1 31 87-123 16-46 (107)
489 COG0645 Predicted kinase [Gene 80.4 1.6 3.4E-05 38.9 2.9 25 87-111 2-26 (170)
490 PRK14737 gmk guanylate kinase; 80.4 1.8 4E-05 39.1 3.5 24 86-109 4-27 (186)
491 PRK00300 gmk guanylate kinase; 80.4 1.5 3.2E-05 39.9 2.9 23 88-110 7-29 (205)
492 PRK09376 rho transcription ter 80.3 2.6 5.6E-05 42.8 4.8 27 86-113 170-196 (416)
493 TIGR03743 SXT_TraD conjugative 80.3 2.8 6.1E-05 45.4 5.4 40 84-125 176-215 (634)
494 PRK14732 coaE dephospho-CoA ki 80.3 1.7 3.8E-05 39.6 3.4 30 89-124 2-31 (196)
495 COG1428 Deoxynucleoside kinase 80.2 1.7 3.6E-05 40.2 3.1 25 87-111 5-29 (216)
496 COG3839 MalK ABC-type sugar tr 80.2 9 0.00019 38.1 8.5 46 88-133 31-82 (338)
497 TIGR00174 miaA tRNA isopenteny 80.2 1.5 3.3E-05 42.6 3.0 30 89-123 2-31 (287)
498 PRK13873 conjugal transfer ATP 80.1 2.3 4.9E-05 47.5 4.8 44 90-133 445-490 (811)
499 PRK09825 idnK D-gluconate kina 80.0 1.8 3.9E-05 38.8 3.3 34 88-126 5-38 (176)
500 PF06309 Torsin: Torsin; Inte 80.0 3.2 6.8E-05 35.2 4.5 32 85-116 52-83 (127)
No 1
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-55 Score=397.11 Aligned_cols=314 Identities=40% Similarity=0.674 Sum_probs=279.5
Q ss_pred chHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccc
Q 043873 76 GFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALE 155 (413)
Q Consensus 76 ~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~ 155 (413)
.++.++++....++|++|||||||||+++.||..+|.-+.+||+|++||+||+++.|++... +.++.++|..+ |++++
T Consensus 9 ~l~nil~q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkft-k~pt~V~Gf~n-LfAME 86 (323)
T KOG2825|consen 9 TLQNILEQTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKFT-KTPTKVEGFEN-LFAME 86 (323)
T ss_pred hHHHHhhcceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHhc-CCCccccChhh-heeee
Confidence 67888999889999999999999999999999999999999999999999999999999887 57889999999 99999
Q ss_pred cChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEE
Q 043873 156 INPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRI 235 (413)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~V 235 (413)
+||.....+..+....... .... .|.+.+.+.. ...||.+|.+.+..++.+++..+ ||+|
T Consensus 87 IDp~~e~~~~~~m~~~~~~-----n~~~--~g~g~l~e~~----------~~~Pgideamsfae~~klvk~~~---F~~v 146 (323)
T KOG2825|consen 87 IDPNVEMGDMPEMFGNAAN-----NEGS--DGKGMLQELA----------NAFPGIDEAMSFAEVMKLVKGMN---FDVV 146 (323)
T ss_pred cCCchhhhhhHHHhhcccc-----cccc--cchhHHHHHH----------hcCCChhHHHhHHHHHHHhhccc---cceE
Confidence 9998766555544332211 0111 1122223222 24799999999999999997643 8899
Q ss_pred EEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCce
Q 043873 236 VFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATE 315 (413)
Q Consensus 236 IiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~ 315 (413)
||||+|||||||+|.+|.+++..+++++.++.++....+.+.+++|.+....|++.+.++.+++.++++++.++||+.|.
T Consensus 147 VFDTAPTGHTLRlL~fP~~lek~lgKl~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~Tt 226 (323)
T KOG2825|consen 147 VFDTAPTGHTLRLLQFPTTLEKGLGKLLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTT 226 (323)
T ss_pred EeccCCCcceehhhccchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence 99999999999999999999999999999999999999999999998777777899999999999999999999999999
Q ss_pred EEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCCCC-CchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccCC
Q 043873 316 FVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSA-SDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLV 394 (413)
Q Consensus 316 ~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~-~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~~ 394 (413)
||+|++||.++++|++|+++.|.++++++..||||++++++. .+|++|+.|.+.|.+||+.|.++ +.+..++++|++
T Consensus 227 FVcVcI~eflslyEteRliqeL~k~~idthnIIVNQLL~~~~~~~ck~C~ar~k~Q~kyLdqi~el--yedfhv~klPl~ 304 (323)
T KOG2825|consen 227 FVCVCIAEFLSLYETERLIQELAKQGIDTHNIIVNQLLFPDNEVSCKKCAARRKMQSKYLDQIEEL--YEDFHVVKLPLL 304 (323)
T ss_pred EEEEEHHHHHhHHHHHHHHHHHHhcCCcccceeeeeccCCCCccchHHHHHHHHHHHHHhhhHHHH--Hhhcceeecccc
Confidence 999999999999999999999999999999999999998776 78999999999999999999984 668999999999
Q ss_pred CCCCCCHHHHHHHHHhhhC
Q 043873 395 DVEIRGVPALKFMGDMIWK 413 (413)
Q Consensus 395 ~~e~~g~~aL~~l~~~~~~ 413 (413)
+.|++|+++|+.+++.+|+
T Consensus 305 ~~EvrG~~al~~fse~l~k 323 (323)
T KOG2825|consen 305 PMEVRGVEALNFFSEILLK 323 (323)
T ss_pred hhhhcCHHHHHHHHHHhcC
Confidence 9999999999999999986
No 2
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=100.00 E-value=2.9e-54 Score=420.02 Aligned_cols=304 Identities=41% Similarity=0.677 Sum_probs=250.6
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccccChHHHHHHHH
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREEFR 166 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~ 166 (413)
++++++|||||||||+|+.+|.++|++|+||||+++||+||+++.||.+.. +.+..+.+.++ |++.++|+....++|.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d~l~~~~~-~~~~~v~~~~~-L~a~eid~~~~~~~~~ 79 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSDVLGQKLG-GEPTKVEGVPN-LSAMEIDPEAELEEYW 79 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHHHHTS--B-SS-EEETTCSS-EEEEE--HHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHHHhCCcCC-CCCeEecCCCC-ceeeecCHHHHHHHHH
Confidence 378889999999999999999999999999999999999999999999775 46778887677 9999999999888877
Q ss_pred HhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCChhHH
Q 043873 167 TASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTL 246 (413)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~~~l 246 (413)
+....... ..+ ...... ..+. . .....||.+|.+++.++.++++. ++||+||||||||+|++
T Consensus 80 ~~~~~~~~--~~~----~~~~~~---~~~~-----~-~~~~~PG~~E~~~l~~l~~~~~~---~~~D~IVvDt~ptg~tL 141 (305)
T PF02374_consen 80 EEVQKDLS--SLL----PLIGLE---RILD-----E-ELSSLPGLDELAALLRLADLLES---GEYDLIVVDTPPTGHTL 141 (305)
T ss_dssp HHHHHGCS--TCH----HCHHHH---HHHH-----H-HTTSSTTHHHHHHHHHHHHHHHH---CSTSEEEEESSSSHHHH
T ss_pred HHHHhhhc--cch----hhhhhH---HHHH-----H-HHhcCCcHHHHHHHHHHHHHHHh---CCCCEEEECCCCcHHHH
Confidence 65543222 111 101111 1111 1 11357999999999999999974 56889999999999999
Q ss_pred hhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCccch
Q 043873 247 RLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMA 326 (413)
Q Consensus 247 ~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~pe~~~ 326 (413)
++|++|+.+.+|++++++++.++.+..+.+.+ .+......+++.+.++.++++++++++.|+||+.|.|++|++||.++
T Consensus 142 rlL~lP~~l~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~ 220 (305)
T PF02374_consen 142 RLLSLPERLRWWLDRLLKLRRKIRSLARPLSG-LGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLA 220 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCH-SHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhcchhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcch
Confidence 99999999999999999999988887777655 33333344578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccCCCCCCCCHHHHHH
Q 043873 327 ISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDVEIRGVPALKF 406 (413)
Q Consensus 327 ~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~~~~e~~g~~aL~~ 406 (413)
+.|++|+++.|+.+|+++.++|+||++|+...+|+||+.|.+.|.++|++|++ .|.+.+++++|+++.||+|+++|+.
T Consensus 221 i~Et~r~~~~L~~~gi~v~~vVvNrvlp~~~~~c~~~~~r~~~Q~~~l~~i~~--~f~~~~v~~vp~~~~ev~G~~~L~~ 298 (305)
T PF02374_consen 221 IAETERLLTELKLYGIPVDAVVVNRVLPEEEDDCPFCAARRKEQQKYLAEIEE--SFPDLPVVKVPLLPEEVRGLDALEA 298 (305)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEEEE-TTCSTTSHHHHHHHHHHHHHHHHHHH--HTTTSEEEEEE--SS-S-SHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccCeEEEEccccccccchHHHHHHHHHHHHHHHHHHH--HhcCCCEEEecCCCCCCCCHHHHHH
Confidence 99999999999999999999999999999888899999999999999999998 5889999999999999999999999
Q ss_pred HHHhhhC
Q 043873 407 MGDMIWK 413 (413)
Q Consensus 407 l~~~~~~ 413 (413)
|++.||+
T Consensus 299 ~~~~L~~ 305 (305)
T PF02374_consen 299 LADHLYK 305 (305)
T ss_dssp HHHHHH-
T ss_pred HHHHhcC
Confidence 9999986
No 3
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=100.00 E-value=6e-47 Score=367.68 Aligned_cols=301 Identities=39% Similarity=0.632 Sum_probs=257.6
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccccChHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREEF 165 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~ 165 (413)
..|++++|||||||||+|+++|..+|+.|+|||+|.+||+|||++.|+.+.+ ..+..+. ++ |.+.++|++...++|
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg-~~~~~I~--~n-L~a~eiD~~~~l~ey 77 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELG-HDPRKVG--PN-LDALELDPEKALEEY 77 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccC-CchhhcC--CC-CceeeecHHHHHHHH
Confidence 4588999999999999999999999999999999999999999999999554 3444554 44 999999999999998
Q ss_pred HHhhccCCCCCCchhhHHhhhch-hhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCChh
Q 043873 166 RTASQGSGGSGDGMKDLMDSMGL-GMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGH 244 (413)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~~ 244 (413)
.+.+.. .+...+...++ +...+++ ...||.+|.+++.++.+++.+. +||+||||||||+|
T Consensus 78 ~~~v~~------~~~~~~~~~~l~~~~~~e~----------~~~PGidE~~~l~~i~e~~~~~---~yD~IV~DtaPTG~ 138 (322)
T COG0003 78 WDEVKD------YLARLLRTRGLGGIYADEL----------ATLPGIDEALALLKILEYYVSG---EYDVIVVDTAPTGH 138 (322)
T ss_pred HHHHHH------HHHhhccccccchhHHHHH----------hhCCCHHHHHHHHHHHHHHhcc---CCCEEEEcCCChHH
Confidence 876552 12222222222 1122222 2589999999999999999764 48899999999999
Q ss_pred HHhhccchHHHHHHHhHHHH-HHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCc
Q 043873 245 TLRLLSLPDFLDASIGKMMK-LKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPT 323 (413)
Q Consensus 245 ~l~~L~lp~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~pe 323 (413)
+||+|++|+.+.||++++++ ..+++......++.+.+.... .|.+++.|+.+++++.++++.+.||..|.+++|++|+
T Consensus 139 TLRlL~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe 217 (322)
T COG0003 139 TLRLLSLPEVLGWYLEKLFKPRRKRMVKALKSLSTAAGSPLP-DDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPE 217 (322)
T ss_pred HHHHhccHHHHHHHHHhhhhhHHHHHHHhhhhcccccCCcCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeccc
Confidence 99999999999999999997 666666666666666666655 6789999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhcCCCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccCCCCCCCCHHH
Q 043873 324 VMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDVEIRGVPA 403 (413)
Q Consensus 324 ~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~~~~e~~g~~a 403 (413)
.+++.|++|+++.|.++++++.++++|+++|.+. ++.||+.+.+.|.+++.++.+ .|.+..++.+|++.+|++|.++
T Consensus 218 ~l~l~e~~ra~~~l~~~~i~v~~vi~n~~~p~~~-~~~~~~~~~~~q~~~l~~~~~--~f~~~~v~~vp~~~ee~~g~~~ 294 (322)
T COG0003 218 KLSLYETKRAVERLSLYGIPVDAVIVNKILPDEA-DQPFLEARRKIQQKYLKELEE--TFSDLAVVKVPLLAEEPVGLEA 294 (322)
T ss_pred ccchHHHHHHHHHHHHcCCchheeeeeccccccc-ccHHHHHHHHHHHHHHHHHHH--hhcccceEEecccccccccHHH
Confidence 9999999999999999999999999999999764 456999999999999999988 6899999999999999999999
Q ss_pred HHHHHHhhhC
Q 043873 404 LKFMGDMIWK 413 (413)
Q Consensus 404 L~~l~~~~~~ 413 (413)
|.+|++.+++
T Consensus 295 l~~l~~~l~~ 304 (322)
T COG0003 295 LEKLGDLLYG 304 (322)
T ss_pred HHHHHHhccC
Confidence 9999998763
No 4
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=100.00 E-value=7.5e-42 Score=325.68 Aligned_cols=252 Identities=40% Similarity=0.669 Sum_probs=207.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccccChHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREEFRT 167 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~ 167 (413)
+++++||||+||||+|+++|..+|+.|+|||+||+||++|++++|+.+... .+.+..+..+ ++..+++++...+++..
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~sl~~~~~~~~~~-~~~~~~g~~~-L~~~~id~~~~~~~~~~ 79 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEFGK-GPTPVKGVEN-LSAMEIDPQEALEEYRQ 79 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcccHHHHhCCccCC-CCcccccCCC-ceEEecCHHHHHHHHHH
Confidence 778899999999999999999999999999999999999999999987421 2234445455 88999999988877654
Q ss_pred hhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCChhHHh
Q 043873 168 ASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTLR 247 (413)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~~~l~ 247 (413)
.... .+............+. ..+ ..||++|.+.+.++.+++++. +||||||||||++++++
T Consensus 80 ~~~~---------~~~~~~~~~~~~~~~~-----~~~--~~Pg~~e~l~~~~~~~~l~~~---~yD~VVvDtpPtg~tlr 140 (254)
T cd00550 80 EVLE---------PIEANLLLEMLKGILE-----EEL--ESPGIEEIAAFDEFSRYIDEA---EYDVVVFDTAPTGHTLR 140 (254)
T ss_pred HHHH---------HHHhhccchhHHHHHH-----HHh--cCCCHHHHHHHHHHHHHHhcC---CCCEEEECCCCcHHHHH
Confidence 3221 1111111111111111 111 249999999999999999643 68999999999999999
Q ss_pred hccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCccchH
Q 043873 248 LLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMAI 327 (413)
Q Consensus 248 ~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~pe~~~~ 327 (413)
+|.+|+.+.+ +.+.+.|+..|.+++|++|+.+++
T Consensus 141 lL~lp~~l~~----------------------------------------------~~~~l~d~~~~~~vlV~~p~~~~~ 174 (254)
T cd00550 141 LLSLPTVLSW----------------------------------------------AREILSDPERTSFRLVCIPEKMSL 174 (254)
T ss_pred HHHhHHHHHH----------------------------------------------HHHHhcCCcceEEEEEeCCChhHH
Confidence 9999887652 344688999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccCCCCCCCCHHHHHHH
Q 043873 328 SESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDVEIRGVPALKFM 407 (413)
Q Consensus 328 ~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~~~~e~~g~~aL~~l 407 (413)
.+++++++.|+++|+++.|+|+||+.++...+|+||+.+.+.|.++|++|++ .|.+.+++++|++..||+|+++|+.|
T Consensus 175 ~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~--~~~~~~i~~vp~~~~e~~g~~~L~~~ 252 (254)
T cd00550 175 YETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEE--LFSDLPVAKLPLLPEEVVGLEKLEQF 252 (254)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHH--HhcCCCEEEeecCCCCCCCHHHHHHH
Confidence 9999999999999999999999999998776799999999999999999998 57899999999999999999999998
Q ss_pred H
Q 043873 408 G 408 (413)
Q Consensus 408 ~ 408 (413)
+
T Consensus 253 ~ 253 (254)
T cd00550 253 A 253 (254)
T ss_pred h
Confidence 7
No 5
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=100.00 E-value=5.6e-40 Score=317.51 Aligned_cols=284 Identities=38% Similarity=0.628 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccccChHHHHHHHHHhhccCCCCCCchhh
Q 043873 102 CAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKD 181 (413)
Q Consensus 102 ~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (413)
+|+++|..+|++|+|||+||+||++|++++||.+.+. .+..+.+.++ +++.++++....++|.+.+... +..
T Consensus 1 ~a~a~a~~~a~~g~~vllv~~Dp~~~l~~~~~~~~~~-~~~~v~~~~~-L~~~~id~~~~~~~~~~~~~~~------~~~ 72 (284)
T TIGR00345 1 ISCATAIRLAEQGKKVLLVSTDPAHSLSDVFEQEIGH-TPTKVTGVEN-LSAVEIDPQAALEEYRAKLVEQ------IKG 72 (284)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCCCCHHHHhCCccCC-CCeeccCCCC-ceEEEcCHHHHHHHHHHHHHHH------Hhh
Confidence 5889999999999999999999999999999987643 4566655455 9999999999988887654321 111
Q ss_pred HHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCChhHHhhccchHHHHHHHhH
Q 043873 182 LMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGK 261 (413)
Q Consensus 182 ~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~~~l~~L~lp~~l~~~~~~ 261 (413)
..... ......+ +++ ...||.+|.+.+.++.+++.+. .++||+||||||||+|++++|++|+.+.+|+++
T Consensus 73 ~~~~~--~~~~~~~-----~~~--~~~PG~~E~~~l~~l~~~~~~~-~~~yD~iVvDtaPtghtLrlL~lP~~l~~~l~~ 142 (284)
T TIGR00345 73 NLPDG--DMLGDQL-----EGA--ALSPGIDEIAAFDEFLKHMTDA-ENEFDVVIFDTAPTGHTLRLLQLPEVLSSFLEK 142 (284)
T ss_pred hcccc--ccHHHHH-----hcC--CCCCCHHHHHHHHHHHHHHHHh-hccCCEEEECCCChHHHHHHHhhHHHHHHHHHH
Confidence 11000 1111111 111 2579999999999999999753 256999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCccchHHHHHHHHHHHHhcC
Q 043873 262 MMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKEC 341 (413)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~g 341 (413)
+++.+.++....+.+ .|.. ..|++.+.++.+++++++++++|+||+.|.|++|++|+.+++.+++++++.|+..|
T Consensus 143 ~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlV~~pe~~si~e~~rl~~~L~~~g 217 (284)
T TIGR00345 143 FIKIRSKLGPMLKLF---MGAG--ESDEALEKLEELKEQIEAAREILSDPERTSFVLVVIPEKMSLYESERAHKELAKYG 217 (284)
T ss_pred HHHHHHHHHHHHHHh---cCCC--cchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEECCCCCcHHHHHHHHHHHHhCC
Confidence 999999976554332 4433 34688899999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccCCCCCCCCHHHHHHHHHhh
Q 043873 342 IPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDVEIRGVPALKFMGDMI 411 (413)
Q Consensus 342 i~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~~~~e~~g~~aL~~l~~~~ 411 (413)
+++.++|+|++.+.. ..|++|..+.+.|.++|+++++ .|.+.+++++|++..||+|+++|+.|++.+
T Consensus 218 ~~~~~lvvN~v~~~~-~~~~~~~~r~~~q~~~L~~i~~--~~~~~~~~~vp~~~~e~~G~~~L~~l~~~~ 284 (284)
T TIGR00345 218 IKVDAVIVNQVLPEN-AQDEFCQARWELQQKYLKEIPE--KFADLPVAEVPLQKEEMVGLEALKRLSKTL 284 (284)
T ss_pred CCCCEEEEeCCcCCC-CCCHHHHHHHHHHHHHHHHHHH--HhcCCCeEEecCCCCCCCCHHHHHHHHhhC
Confidence 999999999999864 3589999999999999999998 578999999999999999999999999864
No 6
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.95 E-value=1.4e-26 Score=215.69 Aligned_cols=213 Identities=39% Similarity=0.595 Sum_probs=148.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCcccccc--ChHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEI--NPEKAREEF 165 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~--~~~~~~~~~ 165 (413)
+++++||||+||||+++++|..+|++|+||++||+|+++++.+ ....+ +..... +.+.....+
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~----~~~~~-----------L~~~l~~~~~~~~~~~~ 65 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSD----KGLPN-----------LSDAFIVEDPEIAPNLY 65 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCccccc----ccCCC-----------chhhhccCChHHHHHHH
Confidence 4688999999999999999999999999999999999986544 11111 111100 011111111
Q ss_pred HHhhccCCCCCCchhhHHhhhc-hhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCChh
Q 043873 166 RTASQGSGGSGDGMKDLMDSMG-LGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGH 244 (413)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~~ 244 (413)
....... ..+..... .+... . .....+||..|.+.+.++.+.++.. +||||||||||+++
T Consensus 66 ~~~~~~~-------~~~~~~~~~~~~~~-------~--~~~~~~p~~~ell~~~~l~~~l~~~---~yD~IIiD~pp~~~ 126 (217)
T cd02035 66 REEVDAT-------RRVERAWGGEGGLM-------L--ELAAALPGIEELASLLAVFREFSEG---LYDVIVFDTAPTGH 126 (217)
T ss_pred HHHHHHH-------HHhhhcccchhhhH-------H--hHhccCCCHHHHHHHHHHHHHHhcC---CCCEEEECCCCchH
Confidence 1000000 00000000 00000 0 0013589999999988888887432 38999999999988
Q ss_pred HHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCcc
Q 043873 245 TLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTV 324 (413)
Q Consensus 245 ~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~pe~ 324 (413)
+++++ +.+.+.|+..+.+++|++|+.
T Consensus 127 ~~~~l------------------------------------------------------~~~~l~~~~~~~vllV~~p~~ 152 (217)
T cd02035 127 TLRLL------------------------------------------------------VRELLTDPERTSFRLVTLPEK 152 (217)
T ss_pred HHHHH------------------------------------------------------HHHHccCCCceEEEEEeCCCc
Confidence 76543 112366766789999999999
Q ss_pred chHHHHHHHHHHHHhcCCCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEE
Q 043873 325 MAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQ 390 (413)
Q Consensus 325 ~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~ 390 (413)
.++.+++++++.++..|+++.++|+|++.+....+|.+|+.+.+.|.++|..+++ .+.+.|++.
T Consensus 153 ~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~~~~~~~~~~~~~~~q~~~l~~~~~--~~~~~~~~~ 216 (217)
T cd02035 153 LPLYETERAITELALYGIPVDAVVVNRVLPAEVDDDPFLAARRQIQQKYLAEIEE--LFDDLPIVP 216 (217)
T ss_pred cHHHHHHHHHHHHHHCCCCCCEEEEeCCcCcccCCCHHHHHHHHHHHHHHHHHHH--HcCCCceec
Confidence 9999999999999999999999999999987765688999999999999999987 466776654
No 7
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.6e-26 Score=212.96 Aligned_cols=184 Identities=24% Similarity=0.342 Sum_probs=126.8
Q ss_pred HHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC-CCCchhhhhcccCCCceeeeccCCCCcccccc
Q 043873 78 DEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP-AHSLSDSFAQDLSGGTLVPVEGVDSPLFALEI 156 (413)
Q Consensus 78 ~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp-~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~ 156 (413)
.+.+.+-+++|+|.||||||||||+|+|||.+||+.|++|.++|+|. .+|+..+||.+... ..... .. +.-...
T Consensus 40 ~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~--~~~~~--~g-~~Pv~~ 114 (300)
T KOG3022|consen 40 QENLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEV--VHQSD--NG-WIPVVV 114 (300)
T ss_pred cccccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCce--eeecC--CC-ceeeee
Confidence 34566677999999999999999999999999999999999999998 57999999987542 00000 00 000000
Q ss_pred ChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEE
Q 043873 157 NPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIV 236 (413)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VI 236 (413)
+ .++. .+.++.+... .+ .+.=+........+.++++...|++.||+|
T Consensus 115 ~-------------------~~l~----~mS~gfLl~~-----~~-----~~vIwRGpkk~~~I~qflk~vdwg~lDyLv 161 (300)
T KOG3022|consen 115 N-------------------KNLK----LMSMGFLLKP-----RD-----DSVIWRGPKKNSMIKQFLKDVDWGELDYLV 161 (300)
T ss_pred c-------------------CCeE----EEEeeeecCC-----CC-----ccceeechHHHHHHHHHHhcCCCCCcCEEE
Confidence 0 0111 0111111000 00 011133345677888888888999999999
Q ss_pred EcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceE
Q 043873 237 FDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEF 316 (413)
Q Consensus 237 iDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~ 316 (413)
|||||..... +|.+-+. +. ..++.
T Consensus 162 iDtPPGtsDe-hls~~~~-----------------------------------------------------~~--~~~gA 185 (300)
T KOG3022|consen 162 IDTPPGTSDE-HLSLVQF-----------------------------------------------------LR--ESDGA 185 (300)
T ss_pred EeCCCCCChh-hhheeec-----------------------------------------------------cc--ccCce
Confidence 9999933322 1211110 11 12679
Q ss_pred EEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 317 VIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 317 vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
++||||+..++.+++|.++++++.++|+.|+|.||+...
T Consensus 186 viVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~ 224 (300)
T KOG3022|consen 186 VIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFV 224 (300)
T ss_pred EEEeCchhhhhHHHHhhhhhhhhcCCceEEEEecccccc
Confidence 999999999999999999999999999999999998765
No 8
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.92 E-value=2e-24 Score=206.54 Aligned_cols=177 Identities=22% Similarity=0.288 Sum_probs=130.6
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC-CCCchhhhhcccCCCceeeeccCCCCccccccChHHHH
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP-AHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAR 162 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp-~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~ 162 (413)
..++|+|+|+|||+||||+|+|||.++|+.|+||+++|+|. .++++.+|+.+...+.+..+.+ +.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g--------~~------ 121 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAG--------EA------ 121 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCC--------Cc------
Confidence 56899999999999999999999999999999999999997 5799999999654322211111 10
Q ss_pred HHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCC
Q 043873 163 EEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPT 242 (413)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt 242 (413)
+......... ..++.++ + -..++.+.+.+...++.+++.+..|+.||||||||||.
T Consensus 122 --~~~~~~~~~~--~~lsi~~-------------------~-~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~ 177 (265)
T COG0489 122 --LEPVIQHDGI--KVLSILP-------------------L-GPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPG 177 (265)
T ss_pred --cccceecCcc--ceEEEEe-------------------c-CCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCC
Confidence 1111000000 1111111 0 11356688889999999999999999999999999995
Q ss_pred hhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecC
Q 043873 243 GHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIP 322 (413)
Q Consensus 243 ~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~p 322 (413)
.....+. +++.- .+++++|++|
T Consensus 178 ~g~~d~~---------------------------------------------------------i~~~~-~~g~viVt~p 199 (265)
T COG0489 178 TGDADAT---------------------------------------------------------VLQRI-PDGVVIVTTP 199 (265)
T ss_pred chHHHHH---------------------------------------------------------HHhcc-CCeEEEEeCC
Confidence 4443211 01111 2389999999
Q ss_pred ccchHHHHHHHHHHHHhcCCCcceEEEecccCCC
Q 043873 323 TVMAISESSRLHASLRKECIPVQRLIVNQVLPPS 356 (413)
Q Consensus 323 e~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~ 356 (413)
+.++..+++++++++++.++++.|+|.||.....
T Consensus 200 ~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~ 233 (265)
T COG0489 200 GKTALEDVKKAIDMLEKAGIPVLGVVENMSYFIC 233 (265)
T ss_pred ccchHHHHHHHHHHHHhcCCceEEEEecCccCcc
Confidence 9999999999999999999999999999988754
No 9
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.91 E-value=4.3e-24 Score=213.34 Aligned_cols=177 Identities=24% Similarity=0.310 Sum_probs=112.9
Q ss_pred CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC-CchhhhhcccCCCceeeeccCCCCccccccChHHH
Q 043873 83 GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH-SLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKA 161 (413)
Q Consensus 83 ~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~-sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~ 161 (413)
+.+++|+|+|+||||||||+|+|||.+||+.|+||+|||+|+|+ +++.+||.+..... .. .+ .. +.|...
T Consensus 105 ~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~--~~---~~-~~---i~p~~~ 175 (369)
T PRK11670 105 GVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPT--SP---DG-TH---MAPIMA 175 (369)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCc--cc---CC-ce---eeeeec
Confidence 45689999999999999999999999999999999999999986 46688886432110 00 00 00 000000
Q ss_pred HHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCC
Q 043873 162 REEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAP 241 (413)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpP 241 (413)
.++... ..+.+.. .+.. ..+.|+ .....+.+++.+..|++||||||||||
T Consensus 176 ---------------~g~~~~----~~~~l~~------~~~~--~i~~g~---~~~~~l~~~l~~~~~~~yDyvIID~PP 225 (369)
T PRK11670 176 ---------------HGLATN----SIGYLVT------DDNA--MVWRGP---MASKALMQMLQETLWPDLDYLVLDMPP 225 (369)
T ss_pred ---------------cCcccc----cHHHhcC------cCcc--eeecCc---chHHHHHHHHHHHhhccCCEEEEeCCC
Confidence 000000 0000000 0000 011221 123345555544447889999999999
Q ss_pred ChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEec
Q 043873 242 TGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTI 321 (413)
Q Consensus 242 t~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~ 321 (413)
..+...+. +. .+. ..+.+++|++
T Consensus 226 g~gd~~l~-~~------------------------------------------------------~l~--aad~viiV~t 248 (369)
T PRK11670 226 GTGDIQLT-LA------------------------------------------------------QNI--PVTGAVVVTT 248 (369)
T ss_pred CCchHHHH-Hh------------------------------------------------------hhc--cCCeEEEEec
Confidence 65432110 00 010 1367999999
Q ss_pred CccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 322 PTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 322 pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
|+..++.++.+.++.+++.++++.|+|+||+...
T Consensus 249 p~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 249 PQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHI 282 (369)
T ss_pred CchhHHHHHHHHHHHHhccCCCeEEEEEcCCccc
Confidence 9999999999999999999999999999998754
No 10
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.90 E-value=2.7e-23 Score=186.03 Aligned_cols=166 Identities=24% Similarity=0.303 Sum_probs=114.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccccChHHHHHHHH
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREEFR 166 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~ 166 (413)
+|+|+|+|||+||||+|+|||..+|+.|+||+|||+|+|++...++. .
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~--------------------------------~ 48 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMW--------------------------------R 48 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHH--------------------------------h
Confidence 58999999999999999999999999999999999999985322210 0
Q ss_pred HhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCChhHH
Q 043873 167 TASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTL 246 (413)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~~~l 246 (413)
. + .. ...+.+.++....+.||||||||||..+..
T Consensus 49 -------~--~--------------------------------~~-----~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~ 82 (169)
T cd02037 49 -------G--P--------------------------------MK-----MGAIKQFLTDVDWGELDYLVIDMPPGTGDE 82 (169)
T ss_pred -------C--c--------------------------------ch-----HHHHHHHHHHhhcCCCCEEEEeCCCCCcHH
Confidence 0 0 00 001111222222357999999999965432
Q ss_pred hhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCccch
Q 043873 247 RLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMA 326 (413)
Q Consensus 247 ~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~pe~~~ 326 (413)
.+. .+.-...+.+++|++|+..+
T Consensus 83 ~~~---------------------------------------------------------~~~~~~ad~viiV~~p~~~s 105 (169)
T cd02037 83 HLT---------------------------------------------------------LAQSLPIDGAVIVTTPQEVA 105 (169)
T ss_pred HHH---------------------------------------------------------HHhccCCCeEEEEECCchhh
Confidence 100 01001246899999999999
Q ss_pred HHHHHHHHHHHHhcCCCcceEEEecccCCCCCchHHHHHHHHH-HHHHHHHhhcCCCCCCCceEEccC
Q 043873 327 ISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKD-QMRVLETIMSDPQLANLRLVQAPL 393 (413)
Q Consensus 327 ~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~~~~~~~~~~~~~-q~~~l~~i~~d~~~~~~~~~~~p~ 393 (413)
+.++.++++.+++.++++.|+|+||+.+. |..|+++... +.++++.+.+ .+....+..+|+
T Consensus 106 ~~~~~~~~~~l~~~~~~~~gvv~N~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ip~ 167 (169)
T cd02037 106 LDDVRKAIDMFKKVNIPILGVVENMSYFV----CPHCGKKIYIFGKGGGEKLAE--ELGVPLLGKIPL 167 (169)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEcCCccc----CCCCCCcccccCCccHHHHHH--HcCCCEEEeccC
Confidence 99999999999999999999999999874 2234444333 4456666655 244455666665
No 11
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.88 E-value=3.8e-22 Score=192.30 Aligned_cols=190 Identities=17% Similarity=0.208 Sum_probs=128.5
Q ss_pred CCCCCcccccchHHhh-----cCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhhcccCCC
Q 043873 66 SISTPRETVAGFDEMV-----AGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFAQDLSGG 139 (413)
Q Consensus 66 ~~~~~~~~~~~~~~~~-----~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg~~~~~~ 139 (413)
+.+...|.++.++..+ ++..++|+|+|+|||+||||+|.|||..+|+.|+||++||+|++ ++++..|+.+...+
T Consensus 79 ~~~~~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~g 158 (274)
T TIGR03029 79 PFSPQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRG 158 (274)
T ss_pred CCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCC
Confidence 3445667888888866 35678999999999999999999999999999999999999986 56788887654332
Q ss_pred ceeeeccCCCCccccccChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHH
Q 043873 140 TLVPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISK 219 (413)
Q Consensus 140 ~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~ 219 (413)
... +...+ .+.. ........ ++++.++.+.. .+...+.+...+
T Consensus 159 l~~--------~l~~~-~~~~------~i~~~~~~--~~l~~lp~g~~--------------------~~~~~~~~~~~~ 201 (274)
T TIGR03029 159 LSD--------ILAGR-SDLE------VITHIPAL--ENLSVLPAGAI--------------------PPNPQELLARPA 201 (274)
T ss_pred HHH--------HhCCC-CCHH------HeeecCCC--CCEEEEeCcCC--------------------CCCHHHHhCcHH
Confidence 100 11111 1110 11101111 34555554432 122333333445
Q ss_pred HHHHHHhhccCCccEEEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHH
Q 043873 220 VMQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRE 299 (413)
Q Consensus 220 l~~~l~~~~~~~yD~VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~ 299 (413)
+.+++++.+ +.||||||||||.....+...
T Consensus 202 ~~~~l~~l~-~~yD~ViiD~pp~~~~~d~~~------------------------------------------------- 231 (274)
T TIGR03029 202 FTDLLNKVM-GDYDVVIVDTPSAEHSSDAQI------------------------------------------------- 231 (274)
T ss_pred HHHHHHHHH-hcCCEEEEeCCCcccccHHHH-------------------------------------------------
Confidence 566666554 569999999999643211000
Q ss_pred HHHHHHHHhcCCCCceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEec
Q 043873 300 RMAKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQ 351 (413)
Q Consensus 300 ~~~~~~~~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~ 351 (413)
+.. ..+.+++|++++.++..+++++++.|++.|.++.|+|+|+
T Consensus 232 -------~~~--~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 232 -------VAT--RARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred -------HHH--hCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 000 1357999999999999999999999999999999999996
No 12
>CHL00175 minD septum-site determining protein; Validated
Probab=99.87 E-value=2.8e-22 Score=193.86 Aligned_cols=176 Identities=22% Similarity=0.218 Sum_probs=113.0
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhhcccCCCceeeeccCCCCccccccChHHHH
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAR 162 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~ 162 (413)
.+++|+|+|+||||||||+|+|||.+|++.|+||++||+|++ ++++.+||.+.... ..+. ++......
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~--~~~~----d~l~~~~~----- 82 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVL--YTAM----DVLEGECR----- 82 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCC--CCHH----HHHcCCCC-----
Confidence 358999999999999999999999999999999999999997 78999988763210 0000 00000001
Q ss_pred HHHHHhhcc-CCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCC
Q 043873 163 EEFRTASQG-SGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAP 241 (413)
Q Consensus 163 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpP 241 (413)
+.+.... ... ++++.++.+..... .. .....+.++++......||||||||||
T Consensus 83 --l~~~~~~~~~~--~~l~~l~~~~~~~~----------------~~------~~~~~l~~~l~~l~~~~yD~VIiDtpp 136 (281)
T CHL00175 83 --LDQALIRDKRW--KNLSLLAISKNRQR----------------YN------VTRKNMNMLVDSLKNRGYDYILIDCPA 136 (281)
T ss_pred --hhhheeecCCC--CCeEEEeCCCchhh----------------cc------CCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 1111110 001 33443332221100 00 001123334433332269999999999
Q ss_pred ChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEec
Q 043873 242 TGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTI 321 (413)
Q Consensus 242 t~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~ 321 (413)
..+..... .+.. .+.+++|++
T Consensus 137 ~~~~~~~~---------------------------------------------------------~l~~--aD~viiV~~ 157 (281)
T CHL00175 137 GIDVGFIN---------------------------------------------------------AIAP--AQEAIVVTT 157 (281)
T ss_pred CCCHHHHH---------------------------------------------------------HHHh--cCeeEEEcC
Confidence 76542100 0111 357899999
Q ss_pred CccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 322 PTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 322 pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
|+..++..+.++++.+++.+.+..++|+|++.+.
T Consensus 158 p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~ 191 (281)
T CHL00175 158 PEITAIRDADRVAGLLEANGIYNVKLLVNRVRPD 191 (281)
T ss_pred CChHHHHHHHHHHHHHHHcCCCceEEEEeccChh
Confidence 9999999999999999999988889999999764
No 13
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.87 E-value=1.9e-22 Score=191.23 Aligned_cols=172 Identities=20% Similarity=0.233 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhhcccCCCceeeeccCCCCccccccChHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREE 164 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~ 164 (413)
++|+|+|+||||||||+|+|||..||++|+||++||+|+| ++++.+||.+........ +.....+
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~-------~~~~~~~------- 66 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHD-------VLAGEAD------- 66 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHH-------HhcCCCC-------
Confidence 4799999999999999999999999999999999999996 689988887532110000 1100011
Q ss_pred HHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCChh
Q 043873 165 FRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGH 244 (413)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~~ 244 (413)
+.+.+... . .+++.++.+...... +......+.+.+.... +.||||||||||..+
T Consensus 67 ~~~~~~~~-~--~~l~~lp~~~~~~~~---------------------~~~~~~~l~~~l~~l~-~~yD~VIiD~p~~~~ 121 (251)
T TIGR01969 67 IKDAIYEG-P--FGVKVIPAGVSLEGL---------------------RKADPDKLEDVLKEII-DDTDFLLIDAPAGLE 121 (251)
T ss_pred HHHheEeC-C--CCEEEEeCCCCHHHH---------------------hhcCHHHHHHHHHHHH-hhCCEEEEeCCCccC
Confidence 11111111 1 234444332211100 0011223344444333 469999999999665
Q ss_pred HHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCcc
Q 043873 245 TLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTV 324 (413)
Q Consensus 245 ~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~pe~ 324 (413)
..... .+.. .+.+++|++|+.
T Consensus 122 ~~~~~---------------------------------------------------------~l~~--ad~vliv~~~~~ 142 (251)
T TIGR01969 122 RDAVT---------------------------------------------------------ALAA--ADELLLVVNPEI 142 (251)
T ss_pred HHHHH---------------------------------------------------------HHHh--CCeEEEEECCCC
Confidence 42100 0111 356999999999
Q ss_pred chHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 325 MAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 325 ~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
.++.++.++.+.++..++++.++|+|++.+.
T Consensus 143 ~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 143 SSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred chHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 9999999999999989999899999998764
No 14
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.87 E-value=9.3e-22 Score=187.01 Aligned_cols=230 Identities=23% Similarity=0.274 Sum_probs=137.1
Q ss_pred CcEEEEEcCCCCccHHHHHHHH-HHHHHHcCCCeeEEecCCC-CCchhhhhcccCCCceeeeccCCCCccccccChHHHH
Q 043873 85 QRKHYMLGGKGGVGKTSCAASL-AVKFANHGHPTIVISTDPA-HSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAR 162 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~l-A~~la~~g~~vllvd~Dp~-~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~ 162 (413)
+++|.|.||||||||||+++|+ |..++..|++|++||+|+. +|++..||.+..... +. ++...+.
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~---l~----dvL~~~~------ 68 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTT---LH----DVLAGEA------ 68 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCccc---HH----HHHhCCC------
Confidence 4789999999999999999999 5555556778899999996 799999999865321 10 0111112
Q ss_pred HHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCC
Q 043873 163 EEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPT 242 (413)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt 242 (413)
.+.+....... .+++.++++.+...... +..+++..++++.. +.||||++||||.
T Consensus 69 -~~~Di~~~~~~--~gl~vipg~~~~~~~~~---------------------~~~~~~~~~~~~l~-~~~D~iliD~~aG 123 (262)
T COG0455 69 -SIEDIIYETPQ--DGLYVLPGGSGLEDLAK---------------------LDPEDLEDVIKELE-ELYDYILIDTGAG 123 (262)
T ss_pred -CHhHeeeecCc--CCEEEeeCCCChHHHhh---------------------cCHHHHHHHHHHHH-hcCCEEEEeCCCC
Confidence 23333333221 45666665544321100 11233333444333 4579999999995
Q ss_pred hhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecC
Q 043873 243 GHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIP 322 (413)
Q Consensus 243 ~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~p 322 (413)
.+.-.+. ..+. .+.+++|++|
T Consensus 124 l~~~~~~--------------------------------------------------------~~~~---sd~~viVt~p 144 (262)
T COG0455 124 LSRDTLS--------------------------------------------------------FILS---SDELVIVTTP 144 (262)
T ss_pred ccHHHHH--------------------------------------------------------HHHh---cCcEEEEeCC
Confidence 5432100 0122 2579999999
Q ss_pred ccchHHHHHHHHHHHHhcCCCcce--EEEecccCCCCC-chHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccCCCCCCC
Q 043873 323 TVMAISESSRLHASLRKECIPVQR--LIVNQVLPPSAS-DCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDVEIR 399 (413)
Q Consensus 323 e~~~~~ea~r~~~~l~~~gi~v~g--vVvN~v~~~~~~-~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~~~~e~~ 399 (413)
|..++.++..+++.+.+++++..+ +|+||+.+..+. +......+...|-..++.+..++.+......+.|.....|.
T Consensus 145 e~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~~v~~a~~~g~p~~~~~p~ 224 (262)
T COG0455 145 EPTSITDAYKTIKILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVKQVPVLQVIPFDPEVRRALAEGKPIVLYSPN 224 (262)
T ss_pred CcchHHHHHHHHHHHHHcCCccccceEEEEecccccchhHHHHHHHHHHHhCCceeEeccChHHHHHhhcCCcEEEeCCC
Confidence 999999999999999999999998 999999854442 21111112222222334555544222223334444433444
Q ss_pred CH--HHHHHHHHhh
Q 043873 400 GV--PALKFMGDMI 411 (413)
Q Consensus 400 g~--~aL~~l~~~~ 411 (413)
.. .++.++++.+
T Consensus 225 s~as~ai~~lA~~l 238 (262)
T COG0455 225 SKASQAIKELAAKL 238 (262)
T ss_pred CHHHHHHHHHHHHH
Confidence 33 3555555543
No 15
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.87 E-value=2.5e-21 Score=178.52 Aligned_cols=179 Identities=18% Similarity=0.243 Sum_probs=114.9
Q ss_pred CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC-chhhhhcccCCCceeeeccCCCCccccccChHHH
Q 043873 83 GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS-LSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKA 161 (413)
Q Consensus 83 ~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s-ls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~ 161 (413)
..+++|+|+|+|||+||||+++|||..+|+.|+||++||+|++.+ ++..|+.+..... +. ++...+.+.
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~---l~----~~l~~~~~l--- 84 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITG---LT----NFLSGTTDL--- 84 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCC---HH----HHhcCCCCH---
Confidence 347999999999999999999999999999999999999999764 5666655431100 00 011111111
Q ss_pred HHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCC
Q 043873 162 REEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAP 241 (413)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpP 241 (413)
.+....... ++++.++.+. ..+...+.+....+.+.++... ..||||||||||
T Consensus 85 ----~~~i~~~~~--~~l~~l~~g~--------------------~~~~~~~~l~~~~l~~~l~~l~-~~yD~ViiD~pp 137 (204)
T TIGR01007 85 ----SDAICDTNI--ENLFVITSGP--------------------VPPNPTELLQSSNFKTLIETLR-KYFDYIIIDTPP 137 (204)
T ss_pred ----HHhcccCCC--CCEEEEeCCC--------------------CCCCHHHHhCcHHHHHHHHHHH-hcCCEEEEeCCC
Confidence 111111111 2333333221 1222223333344555555553 569999999999
Q ss_pred ChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEec
Q 043873 242 TGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTI 321 (413)
Q Consensus 242 t~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~ 321 (413)
...... .. .+.. ..+.+++|+.
T Consensus 138 ~~~~~~------~~---------------------------------------------------~~~~-~~D~vilV~~ 159 (204)
T TIGR01007 138 IGTVTD------AA---------------------------------------------------IIAR-ACDASILVTD 159 (204)
T ss_pred ccccch------HH---------------------------------------------------HHHH-hCCeEEEEEE
Confidence 332110 00 0000 1357999999
Q ss_pred CccchHHHHHHHHHHHHhcCCCcceEEEecccCCC
Q 043873 322 PTVMAISESSRLHASLRKECIPVQRLIVNQVLPPS 356 (413)
Q Consensus 322 pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~ 356 (413)
|+..+..++.++++.+++.|+++.|+|+|++....
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 160 AGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 99999999999999999999999999999987654
No 16
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.86 E-value=9.4e-21 Score=191.83 Aligned_cols=197 Identities=21% Similarity=0.274 Sum_probs=120.3
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccc-cccChHHHH
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFA-LEINPEKAR 162 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~-~~~~~~~~~ 162 (413)
.+++|+|+|.||||||||+|+|||..||++|+|||+||+|||++++.+||...... ... ...+.. ...+. ..
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~lt~~~g~~~~~~----~~~-~~tl~~~l~~~~--~~ 192 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVLPETD----VGA-NETLYAAIRYDD--TR 192 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHcCCCcccc----ccc-cccHHHHHhccc--cC
Confidence 34899999999999999999999999999999999999999999999998754211 000 000111 00000 00
Q ss_pred HHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCC
Q 043873 163 EEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPT 242 (413)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt 242 (413)
..+.+.+..+.. ++++.+|++..+..++..+.. .+.. .. ..+......+.+.++... ++||||||||||+
T Consensus 193 ~~~~~~i~~t~~--~~ldliPa~~~l~~~e~~~~~----~~~~-~~--~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~ 262 (405)
T PRK13869 193 RPLRDVIRPTYF--DGLHLVPGNLELMEFEHTTPK----ALSD-KG--TRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQ 262 (405)
T ss_pred CCHHHheeccCC--CCeeEecCCHHHHHHHHHhHH----HHhh-hc--ccchhHHHHHHHHHHHhh-ccCCEEEEECCCc
Confidence 112222322222 577778877655443332110 0000 00 011111234455555443 5799999999998
Q ss_pred hhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecC
Q 043873 243 GHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIP 322 (413)
Q Consensus 243 ~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~p 322 (413)
.+.+... .+.. .+.+++++.|
T Consensus 263 l~~~t~~---------------------------------------------------------al~a--Ad~viiPv~p 283 (405)
T PRK13869 263 LGFLTLS---------------------------------------------------------GLCA--ATSMVITVHP 283 (405)
T ss_pred hhHHHHH---------------------------------------------------------HHHH--cCEEEEecCC
Confidence 8764211 0111 3578999999
Q ss_pred ccchHHHHHHHHHH-------HHhcC--C--CcceEEEecccCCC
Q 043873 323 TVMAISESSRLHAS-------LRKEC--I--PVQRLIVNQVLPPS 356 (413)
Q Consensus 323 e~~~~~ea~r~~~~-------l~~~g--i--~v~gvVvN~v~~~~ 356 (413)
+..++..+..+++. +++.| + ...++|+|++-+..
T Consensus 284 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~ 328 (405)
T PRK13869 284 QMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQD 328 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCC
Confidence 99999988888763 33333 2 34579999987653
No 17
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.86 E-value=4.7e-21 Score=181.33 Aligned_cols=52 Identities=37% Similarity=0.532 Sum_probs=48.8
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhccc
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDL 136 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~ 136 (413)
+++|+|+|+||||||||+|+|||..||++|+||++||+|+|++++..||.+.
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~ 52 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDW 52 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCC
Confidence 4789999999999999999999999999999999999999999999988754
No 18
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.85 E-value=4.6e-22 Score=191.07 Aligned_cols=47 Identities=32% Similarity=0.576 Sum_probs=43.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhc
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQ 134 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~ 134 (413)
+|+|+ |||||||||+|+|||.+||++|+|||+||+|||++++.+|+.
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~~ 48 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLTG 48 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceecC
Confidence 57777 899999999999999999999999999999999999988863
No 19
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.85 E-value=1.2e-21 Score=188.69 Aligned_cols=47 Identities=23% Similarity=0.533 Sum_probs=44.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhh
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSF 132 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~l 132 (413)
|++|+|+ |||||||||+|+|||..||++|+||++||+|||++.+.++
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l 47 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRML 47 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhh
Confidence 4789999 9999999999999999999999999999999999888876
No 20
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.85 E-value=4.7e-21 Score=177.86 Aligned_cols=47 Identities=26% Similarity=0.523 Sum_probs=42.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhh
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFA 133 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg 133 (413)
++|+|+ |||||||||+++|||..||+.|+|||+||+|||++.+..++
T Consensus 1 ~~iav~-gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~ 47 (212)
T cd02117 1 RQIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLL 47 (212)
T ss_pred CEEEEE-CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCcccccc
Confidence 468888 59999999999999999999999999999999998777664
No 21
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.85 E-value=1.3e-21 Score=176.03 Aligned_cols=176 Identities=22% Similarity=0.215 Sum_probs=116.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhhcccCCCceeeeccCCCCccccccChHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREE 164 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~ 164 (413)
++|+|+||||||||||+++|++.+||+.|+||++||+|.. .||.-.+|.+..- +....+ ....+...
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~Ri-----VYd~vd-Vi~g~~~l------ 70 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRI-----VYDLVD-VIEGEATL------ 70 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhccccee-----eeeehh-hhcCccch------
Confidence 7899999999999999999999999999999999999985 7899999987642 111111 11111111
Q ss_pred HHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCChh
Q 043873 165 FRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGH 244 (413)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~~ 244 (413)
.+....... .+++..+|++..-+ .+.+.-+.+..++++.....|||||+|||..-+
T Consensus 71 -~QALIkDKr-~~nL~lLPAsQtrd----------------------Kdalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE 126 (272)
T COG2894 71 -NQALIKDKR-LENLFLLPASQTRD----------------------KDALTPEGVKKVVNELKAMDFDYIIIDSPAGIE 126 (272)
T ss_pred -hhHhhcccc-CCceEecccccccC----------------------cccCCHHHHHHHHHHHHhcCCCEEEecCcchHH
Confidence 111111111 03444445443222 112223444455554443569999999997443
Q ss_pred HHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCcc
Q 043873 245 TLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTV 324 (413)
Q Consensus 245 ~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~pe~ 324 (413)
.=..+ .+. ..+..++||+||.
T Consensus 127 ~G~~~---------------------------------------------------------A~~--~Ad~AiVVtnPEv 147 (272)
T COG2894 127 QGFKN---------------------------------------------------------AVY--FADEAIVVTNPEV 147 (272)
T ss_pred HHHHh---------------------------------------------------------hhh--ccceEEEEcCCCc
Confidence 21100 011 1347899999999
Q ss_pred chHHHHHHHHHHHHhcC----CCc---ceEEEecccCCC
Q 043873 325 MAISESSRLHASLRKEC----IPV---QRLIVNQVLPPS 356 (413)
Q Consensus 325 ~~~~ea~r~~~~l~~~g----i~v---~gvVvN~v~~~~ 356 (413)
.|++++.|.+..|+..+ ..- ..+++||..|.-
T Consensus 148 SsVRDsDRiiGlLesk~~rae~~~~~~~~llvnR~~p~~ 186 (272)
T COG2894 148 SSVRDSDRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEM 186 (272)
T ss_pred cccccchhheeehhcccchhhcCCcccceEEEEccCHHH
Confidence 99999999999999877 333 689999998864
No 22
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.85 E-value=2.8e-21 Score=188.28 Aligned_cols=239 Identities=15% Similarity=0.192 Sum_probs=132.5
Q ss_pred CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCcccc--ccChHH
Q 043873 83 GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFAL--EINPEK 160 (413)
Q Consensus 83 ~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~--~~~~~~ 160 (413)
.+++++.| +|||||||||+|+|||..||++|+|||+||+|||++.+..|+.......... +... ..++..
T Consensus 4 ~~~~~~~~-~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d-------~~~~~~~~~~~~ 75 (296)
T PRK13236 4 ENIRQIAF-YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLH-------LAAERGAVEDLE 75 (296)
T ss_pred cCceEEEE-ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHH-------HHHhcCCccCCC
Confidence 35577777 7899999999999999999999999999999999877776643221110000 1000 001111
Q ss_pred HHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCC
Q 043873 161 AREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTA 240 (413)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtp 240 (413)
+.+... ... .+++.++++..... + ...|..... .+..+.....|++||||+|||+
T Consensus 76 ----l~~~i~-~~~--~gv~llpa~~~~~~------------~---~~~~~~~~~---~l~~~~~~~~~~~yD~vliD~~ 130 (296)
T PRK13236 76 ----LHEVML-TGF--RGVKCVESGGPEPG------------V---GCAGRGIIT---AINFLEENGAYQDLDFVSYDVL 130 (296)
T ss_pred ----HHHhhe-eCC--CCeEEEECCCCCCC------------C---CCcceeehh---hhHHHHhcCccccCCEEEEecc
Confidence 122222 111 45666655421110 0 112222211 2222222334678999999996
Q ss_pred CChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEe
Q 043873 241 PTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVT 320 (413)
Q Consensus 241 Pt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt 320 (413)
+... ...+..+ +.-...+.+++|+
T Consensus 131 ~~~~-~~~~~~~-------------------------------------------------------~~l~aAD~vIIvt 154 (296)
T PRK13236 131 GDVV-CGGFAMP-------------------------------------------------------IREGKAQEIYIVT 154 (296)
T ss_pred ccce-ecccccc-------------------------------------------------------chhccCCEEEEec
Confidence 3211 1000000 0000136899999
Q ss_pred cCccchHHHHHHHHHHH----HhcCCCcceEEEecccCCCCCchHHHHH-HHHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 043873 321 IPTVMAISESSRLHASL----RKECIPVQRLIVNQVLPPSASDCKFCAM-KRKDQMRVLETIMSDPQLANLRLVQAPLVD 395 (413)
Q Consensus 321 ~pe~~~~~ea~r~~~~l----~~~gi~v~gvVvN~v~~~~~~~~~~~~~-~~~~q~~~l~~i~~d~~~~~~~~~~~p~~~ 395 (413)
+|+..++..+.++.+.+ +..++++.|+|+||... .......+. +...+...+..|+++..+......+.|.+.
T Consensus 155 tpe~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~--~~~~~ile~l~~~~g~~vl~~Ip~~~~v~eA~~~~~Pv~~ 232 (296)
T PRK13236 155 SGEMMAMYAANNIARGILKYAHTGGVRLGGLICNSRNV--DREIELIETLAKRLNTQMIHFVPRDNIVQHAELRRMTVNE 232 (296)
T ss_pred CcchHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCCC--cchHHHHHHHHHHhCccceeeCCCChHHHHHHHcCCChhh
Confidence 99999998888554433 34478889999998421 111112111 112222345567766556666667777776
Q ss_pred CCCCC--HHHHHHHHHhhh
Q 043873 396 VEIRG--VPALKFMGDMIW 412 (413)
Q Consensus 396 ~e~~g--~~aL~~l~~~~~ 412 (413)
..|.. ..+...|++.|.
T Consensus 233 ~~p~s~~a~~y~~La~ell 251 (296)
T PRK13236 233 YAPDSNQGNEYRALAKKII 251 (296)
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 66655 345566666553
No 23
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.85 E-value=9.6e-21 Score=175.18 Aligned_cols=184 Identities=16% Similarity=0.167 Sum_probs=116.5
Q ss_pred CcccccchHHhhc---------CCCcEEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCCCC-CchhhhhcccCC
Q 043873 70 PRETVAGFDEMVA---------GTQRKHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDPAH-SLSDSFAQDLSG 138 (413)
Q Consensus 70 ~~~~~~~~~~~~~---------~~~~~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp~~-sls~~lg~~~~~ 138 (413)
..+.++.++..+. +.+++|+|+|+|||+||||+|+|||.+||+ .|+|||+||+|++. +++..|+.+...
T Consensus 11 ~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~ 90 (207)
T TIGR03018 11 IAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEP 90 (207)
T ss_pred HHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCC
Confidence 3445555555432 246899999999999999999999999997 69999999999985 788888876432
Q ss_pred CceeeeccCCCCccccccChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHH
Q 043873 139 GTLVPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAIS 218 (413)
Q Consensus 139 ~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~ 218 (413)
+ +...-.+... .+.+....... ++++.++.+.. .....+.....
T Consensus 91 ~-----------l~~~l~~~~~---~l~~~i~~~~~--~~l~vl~~g~~--------------------~~~~~~~~~~~ 134 (207)
T TIGR03018 91 G-----------LSDCLLDPVL---DLADVLVPTNI--GRLSLLPAGRR--------------------HPNPTELLASQ 134 (207)
T ss_pred C-----------HHHHHcCCCC---CHHHHhccCCC--CCEEEEeCCCC--------------------CCCHHHHhCcH
Confidence 2 1100000000 11222221111 33443332221 11122223334
Q ss_pred HHHHHHHhhccCCc--cEEEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHH
Q 043873 219 KVMQFVESQQYNMF--TRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQ 296 (413)
Q Consensus 219 ~l~~~l~~~~~~~y--D~VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~ 296 (413)
.+.++++... ++| |||||||||....-....
T Consensus 135 ~l~~~l~~l~-~~y~~D~IiiD~pp~~~~~~~~~---------------------------------------------- 167 (207)
T TIGR03018 135 RMRSLLHELA-RRYPDRIIIIDTPPLLVFSEARA---------------------------------------------- 167 (207)
T ss_pred HHHHHHHHHH-hhCCCCEEEEECCCCcchhHHHH----------------------------------------------
Confidence 4555555443 335 999999999664311000
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEe
Q 043873 297 LRERMAKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVN 350 (413)
Q Consensus 297 l~~~~~~~~~~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN 350 (413)
++.. .+.+++|+.|+..+...+.++++.++ +.++.|+|+|
T Consensus 168 ----------l~~~--aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 168 ----------LARL--VGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred ----------HHHh--CCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 0001 35799999999999999999999999 7899999998
No 24
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.85 E-value=1.6e-21 Score=188.09 Aligned_cols=48 Identities=27% Similarity=0.498 Sum_probs=44.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhh
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFA 133 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg 133 (413)
+++|+|+ +||||||||+|+|||.+||+.|+|||+||+|||++.+.+++
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~ 48 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLL 48 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCccccccccc
Confidence 4789999 79999999999999999999999999999999999988874
No 25
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.85 E-value=4.1e-21 Score=183.03 Aligned_cols=173 Identities=23% Similarity=0.262 Sum_probs=110.3
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhhcccCCCceeeeccCCCCccccccChHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREE 164 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~ 164 (413)
++|+|+|+||||||||+|+|||..|++.|+||++||+|++ ++++.+||.+.... ..+. ++.....+.+.
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~--~~~~----~~~~~~~~~~~---- 71 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIV--YTLV----DVVEGECRLQQ---- 71 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCC--CCHH----HHhcCcCcHHH----
Confidence 7899999999999999999999999999999999999997 78998888753210 0000 00011111111
Q ss_pred HHHhhccC-CCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCCh
Q 043873 165 FRTASQGS-GGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTG 243 (413)
Q Consensus 165 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~ 243 (413)
..... .. ++++.++.+.... .+......+.+.++... +.||||||||||..
T Consensus 72 ---~i~~~~~~--~~l~~l~~~~~~~----------------------~~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~ 123 (261)
T TIGR01968 72 ---ALIKDKRL--KNLYLLPASQTRD----------------------KDAVTPEQMKKLVNELK-EEFDYVIIDCPAGI 123 (261)
T ss_pred ---HhhcCCCC--CCeEEEeCCCchh----------------------hhhCCHHHHHHHHHHHH-HhCCEEEEeCCCCc
Confidence 11100 00 2333333221100 00001112333333333 45999999999965
Q ss_pred hHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCc
Q 043873 244 HTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPT 323 (413)
Q Consensus 244 ~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~pe 323 (413)
..... . .+.. .+.+++|++|+
T Consensus 124 ~~~~~-------------------------------------------~--------------~l~~--aD~viiv~~~~ 144 (261)
T TIGR01968 124 ESGFR-------------------------------------------N--------------AVAP--ADEAIVVTTPE 144 (261)
T ss_pred CHHHH-------------------------------------------H--------------HHHh--CCeEEEEcCCC
Confidence 43210 0 0111 35799999999
Q ss_pred cchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 324 VMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 324 ~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
..++..+.++++.++..+....++|+|++.+.
T Consensus 145 ~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~~ 176 (261)
T TIGR01968 145 VSAVRDADRVIGLLEAKGIEKIHLIVNRLRPE 176 (261)
T ss_pred cHHHHHHHHHHHHHHHcCCCceEEEEeCcCch
Confidence 99999999999999999877779999998764
No 26
>PHA02518 ParA-like protein; Provisional
Probab=99.85 E-value=1.7e-20 Score=173.21 Aligned_cols=50 Identities=32% Similarity=0.457 Sum_probs=47.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcc
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQD 135 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~ 135 (413)
++|+|+|.||||||||+|+|||..|+++|+||++||+|||++++.|++..
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~ 50 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAR 50 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhc
Confidence 47999999999999999999999999999999999999999999988653
No 27
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.84 E-value=2.4e-20 Score=187.50 Aligned_cols=266 Identities=17% Similarity=0.117 Sum_probs=149.7
Q ss_pred hhhhhccccchhHHHHHhhccCccCccccccccccccccC---Cccc--------cCCCCC-CCccC----CCCCCcccc
Q 043873 11 LACISGASSRKTSMAMLALFSKSQNYTSLCRIARSFEFVS---APLY--------RIPLKS-PFQVR----SISTPRETV 74 (413)
Q Consensus 11 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------~~~~~~-~~~~~----~~~~~~~~~ 74 (413)
..|....+.+...++...|...+|..+...+.....+... .... -..+.. ..... ......+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~p~~~k~~r~f~~~eaA~l~gvs~~~lr~~~~~g~~p~~~~~~~gr~~~R~~ytl~eI 87 (387)
T PHA02519 8 NSCIERGQEMTQAIAIAQFGDDSPEARAITRRWGITEVADLIGVTPQAIRDAEKSGRLPPPDFETRGRVERRAGYTIDQI 87 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCccccccCCcCHHHHHHHhCcCHHHHHHHHHcCCCCCCccCCCCcccccceEcHHHH
Confidence 4688888889999989888777776555444333211111 1100 000000 00000 012334455
Q ss_pred cchHHhhc--------CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec-CCCCCchhhhhcccCCCceeeec
Q 043873 75 AGFDEMVA--------GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST-DPAHSLSDSFAQDLSGGTLVPVE 145 (413)
Q Consensus 75 ~~~~~~~~--------~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~-Dp~~sls~~lg~~~~~~~~~~v~ 145 (413)
..++..+. ...++|+|+|.||||||||+|+|||..||++|+|||+||+ |||+|++.+||...... ..
T Consensus 88 ~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt~~~g~~~~~~----~~ 163 (387)
T PHA02519 88 SHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASMYHGYVPDLH----IH 163 (387)
T ss_pred HHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcccccCcCcccc----cc
Confidence 55665553 2357999999999999999999999999999999999996 99999999998753211 00
Q ss_pred cCCCCccc-cccChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHH
Q 043873 146 GVDSPLFA-LEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFV 224 (413)
Q Consensus 146 ~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l 224 (413)
.... +.. ..-+.. .....+..+.. ++++.+|++..+...+..+....- ....+.... . .+.+.+
T Consensus 164 ~~~t-l~~~~~~~~~----~~~~~i~~t~~--~~ldliPa~~~l~~~e~~l~~~~~----~~~~~~~~~-~---~L~~~L 228 (387)
T PHA02519 164 ADDT-LLPFYLGERD----NAEYAIKPTCW--PGLDIIPSCLALHRIETDLMQYHD----AGKLPHPPH-L---MLRAAI 228 (387)
T ss_pred cccc-HHHHHhCCCc----chHhheecCCC--CCEEEEECChHHHHHHHHHHHhhh----ccccccCHH-H---HHHHHH
Confidence 0000 100 000000 01122222222 577888877766554443321100 000011111 1 233333
Q ss_pred HhhccCCccEEEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHH
Q 043873 225 ESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKV 304 (413)
Q Consensus 225 ~~~~~~~yD~VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~ 304 (413)
+... ++||||||||||+.+.+..-.
T Consensus 229 ~~l~-~~YD~IlID~pPslg~lt~nA------------------------------------------------------ 253 (387)
T PHA02519 229 ESVW-DNYDIIVIDSAPNLGTGTINV------------------------------------------------------ 253 (387)
T ss_pred HHhh-ccCCEEEEECCCCccHHHHHH------------------------------------------------------
Confidence 3333 679999999999877652110
Q ss_pred HHHhcCCCCceEEEEecCccchHHHHHHHHHHHHh-------cCCC-cceEEEecccCC
Q 043873 305 RDLFRDPDATEFVIVTIPTVMAISESSRLHASLRK-------ECIP-VQRLIVNQVLPP 355 (413)
Q Consensus 305 ~~~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~-------~gi~-v~gvVvN~v~~~ 355 (413)
|.. .+.+++.+.|+..++..+..+++.+.. .+.+ -..+++||+-+.
T Consensus 254 ---L~A--Ad~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (387)
T PHA02519 254 ---VCA--ADVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLT 307 (387)
T ss_pred ---HHH--hCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCC
Confidence 111 357888889999888877766655533 1222 234899998654
No 28
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.84 E-value=4.2e-21 Score=184.63 Aligned_cols=48 Identities=29% Similarity=0.531 Sum_probs=45.2
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhc
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQ 134 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~ 134 (413)
++|+|+ +||||||||+++|||..||++|+|||+||+|||++++.+++.
T Consensus 3 ~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~ 50 (270)
T PRK13185 3 LVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTG 50 (270)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcC
Confidence 678888 799999999999999999999999999999999999998874
No 29
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.84 E-value=4.7e-20 Score=185.62 Aligned_cols=267 Identities=17% Similarity=0.162 Sum_probs=148.6
Q ss_pred hhhhhccccchhHHHHHhhccCccCccccccccccccccCCccc-----c---CCCCCCCc-----cC---CCCCCcccc
Q 043873 11 LACISGASSRKTSMAMLALFSKSQNYTSLCRIARSFEFVSAPLY-----R---IPLKSPFQ-----VR---SISTPRETV 74 (413)
Q Consensus 11 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~-----~~---~~~~~~~~~ 74 (413)
..|+..+.++...+....|.+..|..+...+..+..+....-.. + .....+.+ -+ ......+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~p~~~k~~r~~~i~e~A~~~gvs~~tiR~ye~~gll~~~~~~~~gr~~~~~~ftL~ei 87 (388)
T PRK13705 8 NQCINAGHEMTKAIAIAQFNDDSPEARKITRRWRIGEAADLVGVSSQAIRDAEKAGRLPHPDMEMRGRVEQRVGYTIEQI 87 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCccccccCCCCHHHHHHHHCcCHHHHHHHHHcCCCCCCCcCCCCcchhhcCcCHHHH
Confidence 47999999999999998886666665554443332221111000 0 00000000 00 112223344
Q ss_pred cchHHhhc--------CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec-CCCCCchhhhhcccCCCceeeec
Q 043873 75 AGFDEMVA--------GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST-DPAHSLSDSFAQDLSGGTLVPVE 145 (413)
Q Consensus 75 ~~~~~~~~--------~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~-Dp~~sls~~lg~~~~~~~~~~v~ 145 (413)
..+++++. ...++|+|+|.||||||||+|+|||..||++|+|||+||+ |||+|++.+||...... +.
T Consensus 88 ~~lr~~~~~~~~r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt~~~g~~~~~~----~~ 163 (388)
T PRK13705 88 NHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLH----IH 163 (388)
T ss_pred HHHHHhhcccccccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchhhhcCcCcccc----cc
Confidence 44444442 2358999999999999999999999999999999999996 99999999988643210 00
Q ss_pred cCCCCccccccChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHH
Q 043873 146 GVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVE 225 (413)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~ 225 (413)
.... +...-.... ....+.+..+.. ++++.+|++..+...+..+.... .. ...+...+ .. +.+.++
T Consensus 164 ~~~~-l~~~~~~~~---~~~~~~i~~t~~--~~ldliPa~~~l~~~e~~l~~~~-~~---~~~~~~~~-~~---L~~~l~ 229 (388)
T PRK13705 164 AEDT-LLPFYLGEK---DDATYAIKPTCW--PGLDIIPSCLALHRIETELMGKF-DE---GKLPTDPH-LM---LRLAIE 229 (388)
T ss_pred cccc-HHHHHhcCC---CchhhheecCCC--CCEEEEeCCHHHHHHHHHHHHhh-hc---ccccccHH-HH---HHHHHH
Confidence 0000 100000000 001112222222 57788887766654444332110 00 00011011 11 233333
Q ss_pred hhccCCccEEEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHH
Q 043873 226 SQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVR 305 (413)
Q Consensus 226 ~~~~~~yD~VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~ 305 (413)
.. .++||||||||||+.+.+...
T Consensus 230 ~l-~~~YD~IiIDtpP~l~~~t~n-------------------------------------------------------- 252 (388)
T PRK13705 230 TV-AHDYDVIVIDSAPNLGIGTIN-------------------------------------------------------- 252 (388)
T ss_pred hh-hccCCEEEEECCCchhHHHHH--------------------------------------------------------
Confidence 33 357999999999987765211
Q ss_pred HHhcCCCCceEEEEecCccchHHHHHHHHHHHHhc-------CC-CcceEEEecccCC
Q 043873 306 DLFRDPDATEFVIVTIPTVMAISESSRLHASLRKE-------CI-PVQRLIVNQVLPP 355 (413)
Q Consensus 306 ~~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~-------gi-~v~gvVvN~v~~~ 355 (413)
.+.. .+.+++++.|+..++.-+.++++.++.. |. +-..+++|++.+.
T Consensus 253 -al~A--aD~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (388)
T PRK13705 253 -VVCA--ADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNS 307 (388)
T ss_pred -HHHH--cCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCC
Confidence 0111 3578999999998988877776666542 22 2234899998654
No 30
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.84 E-value=1.5e-21 Score=188.24 Aligned_cols=49 Identities=27% Similarity=0.461 Sum_probs=44.4
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCCCCCchhh-hhcc
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDPAHSLSDS-FAQD 135 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp~~sls~~-lg~~ 135 (413)
++|+|+ +||||||||+|+|||.+||+ .|+|||+||+|||++++.+ +|..
T Consensus 3 ~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~ 53 (275)
T PRK13233 3 RKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGK 53 (275)
T ss_pred eEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCC
Confidence 789999 89999999999999999997 6999999999999998886 4543
No 31
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.84 E-value=3.1e-21 Score=185.17 Aligned_cols=49 Identities=24% Similarity=0.514 Sum_probs=45.2
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhc
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQ 134 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~ 134 (413)
+++|+|+ +||||||||+|+|||..||++|+||++||+|||++++.+++.
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~ 49 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLG 49 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcC
Confidence 4678888 799999999999999999999999999999999999887754
No 32
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.84 E-value=3.8e-21 Score=184.61 Aligned_cols=48 Identities=29% Similarity=0.540 Sum_probs=43.9
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhc
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQ 134 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~ 134 (413)
++|+|+ |||||||||+|+|||..||++|+|||+||+|||++++.+++.
T Consensus 1 ~~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~ 48 (267)
T cd02032 1 MVLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTG 48 (267)
T ss_pred CEEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccC
Confidence 357777 699999999999999999999999999999999999888864
No 33
>PRK10037 cell division protein; Provisional
Probab=99.84 E-value=1.5e-20 Score=178.94 Aligned_cols=51 Identities=35% Similarity=0.411 Sum_probs=48.6
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcc
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQD 135 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~ 135 (413)
|++|+|+|.||||||||+|+|||..||++|+|||+||+|||++++.+||.+
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~s~~~g~~ 51 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLLRLSFNVD 51 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhHHHHhCCC
Confidence 578999999999999999999999999999999999999999999999875
No 34
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.83 E-value=4.1e-20 Score=186.64 Aligned_cols=53 Identities=36% Similarity=0.369 Sum_probs=49.7
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhccc
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDL 136 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~ 136 (413)
.+++|+|+|.||||||||+|+|||..||++|+|||+||+|||++++.+||...
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ls~~~g~~~ 155 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQASLSALFGYQP 155 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHcCCCc
Confidence 45799999999999999999999999999999999999999999999998753
No 35
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.83 E-value=2.3e-20 Score=203.66 Aligned_cols=193 Identities=18% Similarity=0.143 Sum_probs=134.7
Q ss_pred CCCCcccccchHHhhc-----CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhhcccCCCc
Q 043873 67 ISTPRETVAGFDEMVA-----GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFAQDLSGGT 140 (413)
Q Consensus 67 ~~~~~~~~~~~~~~~~-----~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg~~~~~~~ 140 (413)
.+...|+++.++..+. ...++|+|+|.|||+||||+|+|||..+|+.|+||||||+|++ ++++.+|+.....+.
T Consensus 523 ~s~~~Ea~r~lr~~l~~~~~~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl 602 (754)
T TIGR01005 523 RPVAEEELRVKEEAVAEAKSVAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGL 602 (754)
T ss_pred CCcchHHHHHHHHHHhhhccCCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCCh
Confidence 3445677888877663 4568999999999999999999999999999999999999997 689999987644321
Q ss_pred eeeeccCCCCccccccChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHH
Q 043873 141 LVPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKV 220 (413)
Q Consensus 141 ~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l 220 (413)
. ++...+.+.+ +.+..... ++++.++++. .++++.+.+....+
T Consensus 603 ~--------~~l~~~~~~~-------~~i~~~~~--~~l~~l~~g~--------------------~~~~~~~ll~~~~~ 645 (754)
T TIGR01005 603 L--------DLLAGLRSLL-------LDLTASGA--ASLPMLDSGL--------------------FPHGITELLASPAM 645 (754)
T ss_pred H--------HHHcCCccHH-------HHhccCCC--CCeeEecCCC--------------------CCCCHHHHhccHHH
Confidence 0 0111111111 11111111 4455444432 12344444444556
Q ss_pred HHHHHhhccCCccEEEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHH
Q 043873 221 MQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRER 300 (413)
Q Consensus 221 ~~~l~~~~~~~yD~VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~ 300 (413)
.+++++.. +.||||||||||.....+...
T Consensus 646 ~~~l~~l~-~~yD~IiID~pp~~~~~d~~~-------------------------------------------------- 674 (754)
T TIGR01005 646 FSLVIHAR-LYSDCVVVDVGTADPVRDMRA-------------------------------------------------- 674 (754)
T ss_pred HHHHHHHH-hhCCEEEEcCCCcchhHHHHH--------------------------------------------------
Confidence 66666554 579999999999665432110
Q ss_pred HHHHHHHhcCCCCceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 301 MAKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 301 ~~~~~~~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
+. +..+.+++|+.++..+.....++++.++..|.++.|+|+|++.+.
T Consensus 675 -------l~-~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~~ 721 (754)
T TIGR01005 675 -------AA-RLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDPN 721 (754)
T ss_pred -------hh-hhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCChh
Confidence 11 113578999999999999999999999999999999999998764
No 36
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.83 E-value=2.4e-21 Score=187.27 Aligned_cols=49 Identities=29% Similarity=0.592 Sum_probs=45.7
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhc
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQ 134 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~ 134 (413)
|++|+|+ |||||||||+|+|||.+||++|+||||||+|||+|++.+|+.
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~ 49 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVG 49 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccC
Confidence 4678888 899999999999999999999999999999999999998864
No 37
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.83 E-value=1.1e-20 Score=183.31 Aligned_cols=230 Identities=16% Similarity=0.140 Sum_probs=125.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccc-cChHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALE-INPEKAREEFR 166 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~-~~~~~~~~~~~ 166 (413)
|+|+ |||||||||+|+|||..||+.|+|||+||+|||++++.+++.....+ +. +++..+ ..... ....
T Consensus 3 ia~~-gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~----i~----~~~~~~~~~~~~--~~~~ 71 (290)
T CHL00072 3 LAVY-GKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPT----II----DTLQSKDYHYED--VWPE 71 (290)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCC----HH----HHHhhccccccc--CChh
Confidence 5666 59999999999999999999999999999999999998874211110 00 011000 00000 0011
Q ss_pred HhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCChhHH
Q 043873 167 TASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTL 246 (413)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~~~l 246 (413)
+.+... . ++++.++++..+...... .....+ ...+.+.+.. .++|||||||||+....-
T Consensus 72 ~~i~~~-~--~~l~lip~~~~~~~~~~~-------------~~~~~~---~~~ll~~l~~--~~~yD~IiIDt~~~l~~~ 130 (290)
T CHL00072 72 DVIYKG-Y--GGVDCVEAGGPPAGAGCG-------------GYVVGE---TVKLLKELNA--FYEYDIILFDVLGDVVCG 130 (290)
T ss_pred heEEeC-C--CCeEEEeCCCCCCccchh-------------hcccHH---HHHHHHHhhc--cccCCEEEEecCCcceec
Confidence 122111 1 455656554433211100 000000 1122233322 246999999998642210
Q ss_pred hhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCccch
Q 043873 247 RLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMA 326 (413)
Q Consensus 247 ~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~pe~~~ 326 (413)
.+. ..+.. .+.+++|+.|+..+
T Consensus 131 a~~--------------------------------------------------------aal~~--AD~viIp~~p~~~s 152 (290)
T CHL00072 131 GFA--------------------------------------------------------APLNY--ADYCIIITDNGFDA 152 (290)
T ss_pred hhh--------------------------------------------------------hhhhc--CCEEEEEecCCHHH
Confidence 000 00111 35799999999999
Q ss_pred HHHHHHHHHHHHhc----CCCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccCCCCCCCC--
Q 043873 327 ISESSRLHASLRKE----CIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDVEIRG-- 400 (413)
Q Consensus 327 ~~ea~r~~~~l~~~----gi~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~~~~e~~g-- 400 (413)
+..+.++++.++.. ++++.++|+||+.... ...+.........+..|+++..+......+.|.+...+.+
T Consensus 153 l~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~----~~~~~~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~s~~ 228 (290)
T CHL00072 153 LFAANRIAASVREKARTHPLRLAGLVGNRTSKRD----LIDKYVEACPMPVLEVLPLIEDIRVSRVKGKTLFEMVESEPS 228 (290)
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEEEeCCCchh----HHHHHHHHcCCceEEECCCChHHHHHHhCCCceEEeCCCCcc
Confidence 99999999888775 5677899999975321 1111111111123344555444444455555555555543
Q ss_pred ----HHHHHHHHHhh
Q 043873 401 ----VPALKFMGDMI 411 (413)
Q Consensus 401 ----~~aL~~l~~~~ 411 (413)
..+...|++.|
T Consensus 229 ~~~~a~~y~~La~el 243 (290)
T CHL00072 229 LNYVCDYYLNIADQL 243 (290)
T ss_pred hhHHHHHHHHHHHHH
Confidence 35666676655
No 38
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.83 E-value=1.5e-20 Score=180.76 Aligned_cols=52 Identities=35% Similarity=0.484 Sum_probs=48.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhhccc
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFAQDL 136 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg~~~ 136 (413)
+++|+|+|+||||||||+|+|||..+|++|+||++||+|++ ++++.+||.+.
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~ 54 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCER 54 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCc
Confidence 37999999999999999999999999999999999999996 78999998764
No 39
>PRK11519 tyrosine kinase; Provisional
Probab=99.82 E-value=6.9e-20 Score=198.27 Aligned_cols=193 Identities=15% Similarity=0.189 Sum_probs=138.4
Q ss_pred CCCCcccccchHHhhc-----CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhhcccCCCc
Q 043873 67 ISTPRETVAGFDEMVA-----GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFAQDLSGGT 140 (413)
Q Consensus 67 ~~~~~~~~~~~~~~~~-----~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg~~~~~~~ 140 (413)
.+...|+++.++..+. ...++|+|+|.+||+||||+|+|||..+|+.|+||||||+|++ ++++..|+.....|.
T Consensus 503 ~s~~~Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl 582 (719)
T PRK11519 503 TDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGL 582 (719)
T ss_pred CCHHHHHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCH
Confidence 3445678888887663 3568999999999999999999999999999999999999986 579999987654331
Q ss_pred eeeeccCCCCccccccChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHH
Q 043873 141 LVPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKV 220 (413)
Q Consensus 141 ~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l 220 (413)
. ++...+.+.+ +.+..... ++++.++.+. .+|.+.+.+...++
T Consensus 583 ~--------~~l~~~~~l~-------~~i~~~~~--~~l~~lp~g~--------------------~~~~~~ell~s~~~ 625 (719)
T PRK11519 583 S--------DILIGQGDIT-------TAAKPTSI--ANFDLIPRGQ--------------------VPPNPSELLMSERF 625 (719)
T ss_pred H--------HHhCCCCCHH-------HhecccCc--CCEEEEeCCC--------------------CCCCHHHHhhHHHH
Confidence 0 0111112222 22221111 4455444332 34566677777788
Q ss_pred HHHHHhhccCCccEEEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHH
Q 043873 221 MQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRER 300 (413)
Q Consensus 221 ~~~l~~~~~~~yD~VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~ 300 (413)
.++++..+ ..||||||||||....-+.+.+
T Consensus 626 ~~ll~~l~-~~yD~ViiDtpP~~~v~Da~~l------------------------------------------------- 655 (719)
T PRK11519 626 AELVNWAS-KNYDLVLIDTPPILAVTDAAIV------------------------------------------------- 655 (719)
T ss_pred HHHHHHHH-hcCCEEEEeCCCcccchHHHHH-------------------------------------------------
Confidence 88887665 5699999999996643221100
Q ss_pred HHHHHHHhcCCCCceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 301 MAKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 301 ~~~~~~~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
... .+.+++|+.++.+...+....++.+++.|+++.|+|+|++...
T Consensus 656 -----~~~----~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~~~ 701 (719)
T PRK11519 656 -----GRH----VGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 701 (719)
T ss_pred -----HHH----CCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 002 3478999999999999999999999999999999999999543
No 40
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.82 E-value=6.3e-20 Score=175.33 Aligned_cols=53 Identities=32% Similarity=0.439 Sum_probs=49.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHH-HcCCCeeEEecCCCCCchhhhhcccC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVISTDPAHSLSDSFAQDLS 137 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la-~~g~~vllvd~Dp~~sls~~lg~~~~ 137 (413)
+++|.|+|.||||||||+|.|||..|| ..|+|||+||+|||+|++.+||.+..
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t~~~~~~~~ 55 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPD 55 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchhhHhcCCCcc
Confidence 578999999999999999999999999 56699999999999999999998754
No 41
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.82 E-value=6.5e-20 Score=198.63 Aligned_cols=193 Identities=17% Similarity=0.183 Sum_probs=136.8
Q ss_pred CCCCcccccchHHhhc-----CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhhcccCCCc
Q 043873 67 ISTPRETVAGFDEMVA-----GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFAQDLSGGT 140 (413)
Q Consensus 67 ~~~~~~~~~~~~~~~~-----~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg~~~~~~~ 140 (413)
.+...|+++.++..+. ...++|+|+|.+||+||||+|+|||.++|+.|+||||||+|++ ++++.+|+.....+.
T Consensus 508 ~s~~~Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl 587 (726)
T PRK09841 508 ADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGL 587 (726)
T ss_pred CCHHHHHHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCH
Confidence 3445678888888653 4678999999999999999999999999999999999999997 578888876543321
Q ss_pred eeeeccCCCCccccccChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHH
Q 043873 141 LVPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKV 220 (413)
Q Consensus 141 ~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l 220 (413)
.++...+...+ +.+..... ++++.++.+. .++.+.+.+...++
T Consensus 588 --------~~~l~~~~~~~-------~~i~~~~~--~~l~vl~~g~--------------------~~~~p~ell~~~~~ 630 (726)
T PRK09841 588 --------SEYLAGKDELN-------KVIQHFGK--GGFDVITRGQ--------------------VPPNPSELLMRDRM 630 (726)
T ss_pred --------HHHhCCCCCHH-------HheeccCC--CCEEEEeCCC--------------------CCCCHHHHhCcHHH
Confidence 00111222222 22222211 3444444322 24556666666777
Q ss_pred HHHHHhhccCCccEEEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHH
Q 043873 221 MQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRER 300 (413)
Q Consensus 221 ~~~l~~~~~~~yD~VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~ 300 (413)
.++++..+ +.||||||||||....-+...+
T Consensus 631 ~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~l------------------------------------------------- 660 (726)
T PRK09841 631 RQLLEWAN-DHYDLVIVDTPPMLAVSDAAVV------------------------------------------------- 660 (726)
T ss_pred HHHHHHHH-hcCCEEEEeCCCccccchHHHH-------------------------------------------------
Confidence 77777654 5799999999996553211100
Q ss_pred HHHHHHHhcCCCCceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 301 MAKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 301 ~~~~~~~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
... .+.+++|+.++.++..++.++++.|++.|.++.|+|+|++.+.
T Consensus 661 -----a~~----ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~~~ 706 (726)
T PRK09841 661 -----GRS----VGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 706 (726)
T ss_pred -----HHh----CCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCcccC
Confidence 002 3478999999999999999999999999999999999999654
No 42
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.81 E-value=1.2e-20 Score=183.74 Aligned_cols=49 Identities=20% Similarity=0.443 Sum_probs=44.7
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhh
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFA 133 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg 133 (413)
.+++|+|+ +||||||||+++|||..||+.|+|||+||+|||++.+..++
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~ 51 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLIL 51 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccc
Confidence 35788887 99999999999999999999999999999999998877664
No 43
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.81 E-value=3.7e-20 Score=178.52 Aligned_cols=47 Identities=26% Similarity=0.550 Sum_probs=42.8
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhh
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFA 133 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg 133 (413)
+.|+|+ |||||||||+|+|||.+||++|+||++||+|||++++..++
T Consensus 1 ~~ia~~-gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~ 47 (275)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLL 47 (275)
T ss_pred CeeEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCcccccc
Confidence 357776 79999999999999999999999999999999999888764
No 44
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.81 E-value=3.5e-19 Score=167.20 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=48.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcc
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQD 135 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~ 135 (413)
|++|+|+|.||||||||+|.|||..++++|+||++||+|||++++.|++..
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~ 51 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENA 51 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhh
Confidence 478999999999999999999999999999999999999999999988654
No 45
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.79 E-value=6.8e-19 Score=158.81 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=99.9
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhhcccCCCceeeeccCCCCccccccChHHHHHHH
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREEF 165 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~ 165 (413)
+|+|+|+|||+||||+|+|||..+ +||+|||+|++ ++++.+|+.+...+. . ... ....
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~--~-------~~~-~~~~------- 59 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEE--D-------FIV-GGKK------- 59 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCccccc--c-------cee-cCCc-------
Confidence 388999999999999999999999 89999999996 689999988654320 0 000 0000
Q ss_pred HHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHh-hccCCccEEEEcCCCChh
Q 043873 166 RTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVES-QQYNMFTRIVFDTAPTGH 244 (413)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~-~~~~~yD~VIiDtpPt~~ 244 (413)
...+... ...+|... .....+.+.+.. ..++.||||||||||..+
T Consensus 60 -----------~~~~~~~----------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~ 105 (179)
T cd03110 60 -----------AVIDPEL----------------------CISCGLCG-KLVTEVRKHAKEIAKAEGAELIIIDGPPGIG 105 (179)
T ss_pred -----------eEEchhh----------------------hccccchH-HHHHHHHHHHHHhhhhcCCCEEEEECcCCCc
Confidence 0000000 00001100 111222222211 113579999999999655
Q ss_pred HHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCcc
Q 043873 245 TLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTV 324 (413)
Q Consensus 245 ~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~pe~ 324 (413)
... + ..+.. .+.+++|++|+.
T Consensus 106 ~~~-~--------------------------------------------------------~~l~~--aD~vliv~~~~~ 126 (179)
T cd03110 106 CPV-I--------------------------------------------------------ASLTG--ADAALLVTEPTP 126 (179)
T ss_pred HHH-H--------------------------------------------------------HHHHc--CCEEEEEecCCc
Confidence 320 0 01212 357999999999
Q ss_pred chHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 325 MAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 325 ~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
.++.++.++++.+++.++++ ++|+|++.+.
T Consensus 127 ~~~~~~~~~~~~l~~~~~~~-~vV~N~~~~~ 156 (179)
T cd03110 127 SGLHDLERAVELVRHFGIPV-GVVINKYDLN 156 (179)
T ss_pred ccHHHHHHHHHHHHHcCCCE-EEEEeCCCCC
Confidence 99999999999999999886 7999998764
No 46
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.79 E-value=3.2e-19 Score=160.21 Aligned_cols=127 Identities=25% Similarity=0.331 Sum_probs=96.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhhcccCCCceeeeccCCCCccccccChHHHHHHH
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREEF 165 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~ 165 (413)
+|+|+|+|||+||||+|+|||..++++|+||++||+|++ ++++.+++.+....
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~-------------------------- 54 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVV-------------------------- 54 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCC--------------------------
Confidence 488999999999999999999999999999999999996 67777665432100
Q ss_pred HHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCChhH
Q 043873 166 RTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHT 245 (413)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~~~ 245 (413)
..+. ++ .++ |||||||||..+.
T Consensus 55 -----------~~~~---------------------~~----~~~----------------------d~viiD~p~~~~~ 76 (179)
T cd02036 55 -----------YTLH---------------------DV----LAG----------------------DYILIDSPAGIER 76 (179)
T ss_pred -----------cchh---------------------hc----ccC----------------------CEEEEECCCCCcH
Confidence 0000 00 001 7999999996553
Q ss_pred HhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCccc
Q 043873 246 LRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVM 325 (413)
Q Consensus 246 l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~pe~~ 325 (413)
.... .+.. .+.+++|+.|+..
T Consensus 77 ~~~~---------------------------------------------------------~l~~--ad~viiv~~~~~~ 97 (179)
T cd02036 77 GFIT---------------------------------------------------------AIAP--ADEALLVTTPEIS 97 (179)
T ss_pred HHHH---------------------------------------------------------HHHh--CCcEEEEeCCCcc
Confidence 2100 0111 3468999999999
Q ss_pred hHHHHHHHHHHHHhcCCCcceEEEecccCCC
Q 043873 326 AISESSRLHASLRKECIPVQRLIVNQVLPPS 356 (413)
Q Consensus 326 ~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~ 356 (413)
++.++.++++.++..+.+..++|+|++.+..
T Consensus 98 s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 98 SLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred hHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 9999999999999999899999999987754
No 47
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.79 E-value=6.2e-19 Score=173.90 Aligned_cols=54 Identities=30% Similarity=0.455 Sum_probs=48.4
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC-chhhhhcccC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS-LSDSFAQDLS 137 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s-ls~~lg~~~~ 137 (413)
.+++|.|+|+||||||||+|+|||..++++|+||+|||+|+|++ +..+||.+..
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~ 146 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDV 146 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCC
Confidence 46899999999999999999999999999999999999999865 6777877643
No 48
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.78 E-value=1.5e-19 Score=173.24 Aligned_cols=47 Identities=28% Similarity=0.583 Sum_probs=43.4
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhh
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFA 133 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg 133 (413)
+++|+|+ +||||||||+|+|||..||+.| |||+||+|||++++..++
T Consensus 2 ~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~ 48 (264)
T PRK13231 2 MKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLC 48 (264)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhh
Confidence 5789999 7999999999999999999999 999999999999887664
No 49
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.77 E-value=5.2e-19 Score=172.11 Aligned_cols=46 Identities=28% Similarity=0.484 Sum_probs=42.5
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhh
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSF 132 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~l 132 (413)
++|+|+ |||||||||+|+|||..||++|+|||+||+|||++.+..+
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l 46 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLL 46 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchh
Confidence 478888 9999999999999999999999999999999998777766
No 50
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.75 E-value=1.4e-17 Score=151.39 Aligned_cols=157 Identities=24% Similarity=0.298 Sum_probs=101.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcc---cCCCceeeeccCCCCccccccChHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQD---LSGGTLVPVEGVDSPLFALEINPEKAREE 164 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~---~~~~~~~~v~~~~~~l~~~~~~~~~~~~~ 164 (413)
|+|+|+|||+||||+|++||..|+++|+||++||+|++.+...++... ...+. ......
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~---------- 62 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGL--------ENANAI---------- 62 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSS--------HGHHCH----------
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccc--------eehhhh----------
Confidence 689999999999999999999999999999999999999877776532 00000 000000
Q ss_pred HHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCChh
Q 043873 165 FRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGH 244 (413)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~~ 244 (413)
. ..++ ...... + ..+ .....+.+.++......||||||||||+..
T Consensus 63 ----~-------~~~~-------~~~~~~--~-----------~~~----~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~ 107 (195)
T PF01656_consen 63 ----L-------KNFE-------SQDIYQ--G-----------EEY----LDPELLREILESLIKSDYDYIIIDTPPGLS 107 (195)
T ss_dssp ----H-------ESCC-------HHHHHH--H-----------CHC----HHHHHHHHHHHHHHHTTSSEEEEEECSSSS
T ss_pred ----h-------hccc-------hhhhhh--h-----------hhh----hHHHHHHHHHHHhhhccccceeeccccccc
Confidence 0 0000 000000 0 001 112233333333222339999999999665
Q ss_pred HHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCcc
Q 043873 245 TLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTV 324 (413)
Q Consensus 245 ~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~pe~ 324 (413)
... ...+.. .+.+++|+.|+.
T Consensus 108 ~~~---------------------------------------------------------~~~l~~--ad~viv~~~~~~ 128 (195)
T PF01656_consen 108 DPV---------------------------------------------------------RNALAA--ADYVIVPIEPDP 128 (195)
T ss_dssp HHH---------------------------------------------------------HHHHHT--SSEEEEEEESSH
T ss_pred HHH---------------------------------------------------------HHHHHh--CceeeeecCCcH
Confidence 430 001222 357999999999
Q ss_pred chHHHHHHHHHHHHhcC--CCcceEEEecccCCC
Q 043873 325 MAISESSRLHASLRKEC--IPVQRLIVNQVLPPS 356 (413)
Q Consensus 325 ~~~~ea~r~~~~l~~~g--i~v~gvVvN~v~~~~ 356 (413)
.++..+.++++.++..+ ++..++|+||+.+..
T Consensus 129 ~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 129 SSIEGAERLIELLKRLGKKLKIIGVVINRVDPGN 162 (195)
T ss_dssp HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCC
T ss_pred HHHHHHHHHHHHHHHhccccceEEEEEeeeCCCc
Confidence 99999999999999998 457799999997653
No 51
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.74 E-value=2.2e-18 Score=168.89 Aligned_cols=51 Identities=29% Similarity=0.464 Sum_probs=45.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC-Cchhhhhccc
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH-SLSDSFAQDL 136 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~-sls~~lg~~~ 136 (413)
.++|+|+ ||||+||||+++|||.+||++|+||++||+|+++ +++.+||...
T Consensus 31 ~~ii~v~-gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~ 82 (329)
T cd02033 31 TQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKA 82 (329)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccC
Confidence 4667776 7999999999999999999999999999999975 7888888654
No 52
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.74 E-value=1.7e-17 Score=155.24 Aligned_cols=53 Identities=34% Similarity=0.472 Sum_probs=50.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLS 137 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~ 137 (413)
|++|++.|.||||||||+++|||..|++.|++|++||+||+.-|.-.||.+..
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~ 53 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLD 53 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCc
Confidence 58999999999999999999999999999999999999999999999998754
No 53
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.73 E-value=1.6e-17 Score=151.72 Aligned_cols=232 Identities=19% Similarity=0.261 Sum_probs=134.0
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcC-CCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccccChHHHHHHHHHh
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHG-HPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREEFRTA 168 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g-~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~ 168 (413)
-++||||+||||+|+.||..+..+| ++||+||+||..+|+..||.+.... ++.+ .....++....
T Consensus 4 aI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~~~---~lg~-----------~~e~~~k~~~a 69 (255)
T COG3640 4 AITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEPMK---YLGG-----------KRELLKKRTGA 69 (255)
T ss_pred EEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCCCCCc---cccc-----------HHHHHHHHhcc
Confidence 3459999999999999888888765 9999999999999999999986421 1110 00111110000
Q ss_pred hccCCC-----CCCchhhHHhhhchhhhHHHhhhhhhccccC--------CCCCChHHHHHHHHHHHHHHhhccCCccEE
Q 043873 169 SQGSGG-----SGDGMKDLMDSMGLGMLADQLGELKLGELLD--------TPPPGLDEAIAISKVMQFVESQQYNMFTRI 235 (413)
Q Consensus 169 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~--------~~~pg~~e~~~~~~l~~~l~~~~~~~yD~V 235 (413)
...... ....++.++..... +-.. -.++. ...-++.. ..+.++++.+ ..++||+|
T Consensus 70 ~~~~~~~~~fk~~~~~~di~~e~~~-----e~~~---~~LLvmGkie~~GeGC~Cp~~-allR~~l~~l---~~~~~e~V 137 (255)
T COG3640 70 EPGGPPGEMFKENPLVSDLPDEYLV-----ENGD---IDLLVMGKIEEGGEGCACPMN-ALLRRLLRHL---ILNRYEVV 137 (255)
T ss_pred CCCCCcccccccCcchhhhhHHHhh-----hcCC---ccEEEeccccCCCCcccchHH-HHHHHHHHHH---hcccCcEE
Confidence 000000 00111222211100 0000 00110 01112222 2334444443 34568899
Q ss_pred EEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCce
Q 043873 236 VFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATE 315 (413)
Q Consensus 236 IiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~ 315 (413)
|+||-....++ |++. ..+ .+-
T Consensus 138 ivDtEAGiEHf----------------------------------gRg~-----------------------~~~--vD~ 158 (255)
T COG3640 138 IVDTEAGIEHF----------------------------------GRGT-----------------------IEG--VDL 158 (255)
T ss_pred EEecccchhhh----------------------------------cccc-----------------------ccC--CCE
Confidence 99999766543 3321 222 467
Q ss_pred EEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 043873 316 FVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVD 395 (413)
Q Consensus 316 ~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~~~ 395 (413)
+++|+-|..-++.-++|+.+..++.|+.-..+|+|++.... ..+-........+.++.|+.|+++........|+..
T Consensus 159 vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~e---~~~~~~~~~~~~~vlg~iP~d~~v~~~dl~G~pl~~ 235 (255)
T COG3640 159 VIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEEE---ELLRELAEELGLEVLGVIPYDPEVVEADLKGEPLNE 235 (255)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccchh---HHHHhhhhccCCeEEEEccCCHHHHhccccCCcccc
Confidence 99999999999999999999999999998999999997651 111111222333456788888777666666666653
Q ss_pred CCCCCHHHHHHHHHh
Q 043873 396 VEIRGVPALKFMGDM 410 (413)
Q Consensus 396 ~e~~g~~aL~~l~~~ 410 (413)
. |.-....+++.+.
T Consensus 236 ~-~~v~~~i~~I~~~ 249 (255)
T COG3640 236 E-PEVLKEIEEIAER 249 (255)
T ss_pred c-hhhhHHHHHHHHH
Confidence 3 2333444444443
No 54
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.68 E-value=4.4e-16 Score=128.68 Aligned_cols=40 Identities=38% Similarity=0.583 Sum_probs=37.4
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEecCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVISTDPAH 126 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~Dp~~ 126 (413)
+|+++|+|||+||||++.|||..+++. |++|+++|+|||.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~ 41 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF 41 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC
Confidence 478999999999999999999999998 9999999999764
No 55
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.64 E-value=2.4e-15 Score=130.36 Aligned_cols=38 Identities=37% Similarity=0.574 Sum_probs=36.4
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+|.++++|||+||||++.++|..++++|++|+++|+|+
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~ 38 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADL 38 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 47899999999999999999999999999999999996
No 56
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.61 E-value=2.9e-14 Score=131.73 Aligned_cols=52 Identities=29% Similarity=0.397 Sum_probs=48.4
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhccc
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDL 136 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~ 136 (413)
|++|.|+|.|||+||||.+..||..|+++|.+|.+||+||+.++..|.....
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~ 52 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQ 52 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhcc
Confidence 5789999999999999999999999999999999999999999999966543
No 57
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.61 E-value=2.4e-16 Score=146.04 Aligned_cols=50 Identities=32% Similarity=0.412 Sum_probs=41.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC-CCCchhhhhcc
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP-AHSLSDSFAQD 135 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp-~~sls~~lg~~ 135 (413)
++|+|.|+||||||||+|.|+|.+|+++|+||.++|+|. |+|++.+++..
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr 51 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENR 51 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHH
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhcc
Confidence 479999999999999999999999999999999999998 78999999764
No 58
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.61 E-value=1.3e-15 Score=142.15 Aligned_cols=52 Identities=29% Similarity=0.367 Sum_probs=46.6
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC-CCCchhhhhcccC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP-AHSLSDSFAQDLS 137 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp-~~sls~~lg~~~~ 137 (413)
++.|+|.|||||+||||+|+|||..|+.. +|++|+|+|- .+|++-+|+.+..
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e~~ 53 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVEVL 53 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhccc-cceEEEecCCCCCCcceEeccchh
Confidence 46799999999999999999999999876 8999999997 6899999987654
No 59
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.58 E-value=1.7e-14 Score=118.29 Aligned_cols=39 Identities=38% Similarity=0.580 Sum_probs=36.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
+|.|.|.|||+||||+|.++|..++++|.+|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 478999999999999999999999999999999999855
No 60
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.48 E-value=4.5e-14 Score=132.23 Aligned_cols=48 Identities=31% Similarity=0.553 Sum_probs=39.8
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchh-hhhc
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSD-SFAQ 134 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~-~lg~ 134 (413)
+.|+|+ ||||.||||+++||+.+||+.|+||+.|-+||.+..+. +++.
T Consensus 1 r~IAiY-GKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g 49 (273)
T PF00142_consen 1 RKIAIY-GKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGG 49 (273)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTT
T ss_pred CeEEEE-cCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCC
Confidence 357777 99999999999999999999999999999999886664 4444
No 61
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.38 E-value=5.6e-13 Score=117.21 Aligned_cols=52 Identities=33% Similarity=0.386 Sum_probs=43.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhhcccC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFAQDLS 137 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg~~~~ 137 (413)
|+|.|+|.+||+||||+|.|||..+|+.|++|++||+|.. +++...++.+..
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~ 53 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPE 53 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSS
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccc
Confidence 5799999999999999999999999999999999999985 557777777654
No 62
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.31 E-value=4.3e-11 Score=115.14 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
+++++++ |++|+||||++++||..+++.|++|++||+|+.
T Consensus 72 ~~vi~l~-G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 4666666 899999999999999999999999999999974
No 63
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.30 E-value=5.7e-11 Score=116.36 Aligned_cols=182 Identities=20% Similarity=0.262 Sum_probs=116.1
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCCC-CCchhhhhcccCCCceeeeccCCCCccccccChHHH
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDPA-HSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKA 161 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp~-~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~ 161 (413)
..+.+.|.+.|||+|-||+|.|+|..++. .++.|+|+|.|.+ ++...+|+++...+ +....-.|+..
T Consensus 103 ~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~-----------i~~~~~~peRL 171 (366)
T COG4963 103 QGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFG-----------IAEAVKQPERL 171 (366)
T ss_pred hceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhh-----------HHHHhcCHHHh
Confidence 45899999999999999999999999995 6899999999975 56667777765432 22222345444
Q ss_pred HHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCC
Q 043873 162 REEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAP 241 (413)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpP 241 (413)
.+.+.+....... ++++.+++- ..+...+-+....+..+++..+ ..||+||||.|-
T Consensus 172 Dq~lld~~~~~~~--~~l~ll~a~---------------------~~~~~~~d~~~~~~~~Ll~~~~-~~~~~vV~Dlp~ 227 (366)
T COG4963 172 DQVLLDSLLTRLA--SGLKLLAAP---------------------TELAKNYDLKTGAVERLLDLLR-GSFDFVVVDLPN 227 (366)
T ss_pred hHHHHHHHHhccC--CCceeecCC---------------------cchhhhcccccchHHHHHHHhh-ccCCeEEEcCCC
Confidence 4444332222111 233222211 1111111122233334443333 469999999993
Q ss_pred ChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEec
Q 043873 242 TGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTI 321 (413)
Q Consensus 242 t~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~ 321 (413)
.... |.. ..|.. .+.+++|+.
T Consensus 228 ~~~~------------~t~---------------------------------------------~vL~~--Sd~iviv~e 248 (366)
T COG4963 228 IWTD------------WTR---------------------------------------------QVLSG--SDEIVIVAE 248 (366)
T ss_pred ccch------------HHH---------------------------------------------HHHhc--CCeEEEEec
Confidence 1111 110 11222 468999999
Q ss_pred CccchHHHHHHHHHHHHhcCCC--cceEEEecccCCCCCc
Q 043873 322 PTVMAISESSRLHASLRKECIP--VQRLIVNQVLPPSASD 359 (413)
Q Consensus 322 pe~~~~~ea~r~~~~l~~~gi~--v~gvVvN~v~~~~~~~ 359 (413)
|+..+++.++++++.|++.+.+ ...+|+|++-..--.+
T Consensus 249 ~sl~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~~ 288 (366)
T COG4963 249 PSLASLRNAKELLDELKRLRPNDPKPILVLNRVGVPKRPE 288 (366)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCCC
Confidence 9999999999999999998664 5578999998764433
No 64
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.27 E-value=3.3e-10 Score=106.26 Aligned_cols=46 Identities=39% Similarity=0.620 Sum_probs=41.5
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC-chhh
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS-LSDS 131 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s-ls~~ 131 (413)
+++++.++||||||||+|++||.+++++|++|+++|+||+++ ++.+
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~ 49 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGY 49 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhH
Confidence 688999999999999999999999999999999999999874 4433
No 65
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.22 E-value=6.5e-11 Score=108.13 Aligned_cols=46 Identities=28% Similarity=0.581 Sum_probs=41.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhh
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSF 132 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~l 132 (413)
+.|+|+ ||||.||||++.|++.++|+.|+||++|-+||.+..+..+
T Consensus 2 r~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~L 47 (278)
T COG1348 2 RQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLL 47 (278)
T ss_pred ceEEEe-cCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHH
Confidence 568888 9999999999999999999999999999999987655544
No 66
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.18 E-value=8.8e-11 Score=102.84 Aligned_cols=38 Identities=24% Similarity=0.438 Sum_probs=34.7
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
.+.||+|+||||++.+++..+.+.|+||+++|+|++.+
T Consensus 3 ~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~ 40 (148)
T cd03114 3 GITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSP 40 (148)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Confidence 45599999999999999999999999999999998653
No 67
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.18 E-value=1.7e-10 Score=102.72 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=34.6
Q ss_pred eEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEe
Q 043873 315 EFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVN 350 (413)
Q Consensus 315 ~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN 350 (413)
.+++|+.+....+.++....+.|++.|+++.|+|+|
T Consensus 131 ~vilV~~~~~~~~~~~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 131 PVILVVRVKLGTINHTLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 489999999999999999999999999999999998
No 68
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.18 E-value=1.3e-09 Score=97.62 Aligned_cols=39 Identities=33% Similarity=0.520 Sum_probs=35.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
+.++.|++|+||||++.++|..+++.|++|+++|+|++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 456669999999999999999999999999999999864
No 69
>PRK10867 signal recognition particle protein; Provisional
Probab=99.16 E-value=6.6e-10 Score=113.02 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=37.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEecCCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVISTDPAHS 127 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~Dp~~s 127 (413)
..++++.|.+|+||||++++||..++++ |++|++||+|++..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 4566666999999999999999999998 99999999998654
No 70
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.09 E-value=1.6e-09 Score=110.10 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHH-HcCCCeeEEecCCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVISTDPAHS 127 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la-~~g~~vllvd~Dp~~s 127 (413)
..+++++|.+|+||||++++||..++ +.|++|++||+|++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 56788889999999999999999987 6899999999998543
No 71
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.08 E-value=4.6e-10 Score=94.12 Aligned_cols=47 Identities=40% Similarity=0.704 Sum_probs=40.3
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhccc
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDL 136 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~ 136 (413)
++++||||+||||++.++|..++++|++|+++|+|| .++...++.+.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~-~~~~~~~~~~~ 48 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP-DDLPERLSVEV 48 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc-hhhHHHHhhcc
Confidence 456799999999999999999999999999999999 66666665543
No 72
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.08 E-value=4e-09 Score=103.65 Aligned_cols=42 Identities=26% Similarity=0.416 Sum_probs=36.5
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
+.+++++ |.+|+||||++++||..++..|++|+++|+|++..
T Consensus 114 ~~vi~lv-GpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~ 155 (318)
T PRK10416 114 PFVILVV-GVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA 155 (318)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch
Confidence 3555555 79999999999999999999999999999998543
No 73
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=99.06 E-value=1.2e-10 Score=90.06 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=35.0
Q ss_pred CceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 313 ATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 313 ~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
.+++++||||+..|..+++|.++++++.++|+.|+|.||.+-.
T Consensus 25 ~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~~~ 67 (81)
T PF10609_consen 25 IDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSYFV 67 (81)
T ss_dssp -SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-EEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccC
Confidence 3689999999999999999999999999999999999997754
No 74
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.04 E-value=4.2e-09 Score=106.63 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=36.5
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
.++++.|.+|+||||+++.||..+.++|++|++|++|++..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 45556689999999999999999999999999999998653
No 75
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.99 E-value=1.2e-08 Score=104.14 Aligned_cols=40 Identities=35% Similarity=0.439 Sum_probs=35.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
.++++.|.+|+||||++++||..+.+.|++|++|++|...
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 3444559999999999999999999999999999999753
No 76
>PRK13768 GTPase; Provisional
Probab=98.98 E-value=2.2e-08 Score=95.46 Aligned_cols=42 Identities=24% Similarity=0.342 Sum_probs=37.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
..++++.|+||+||||++.+++..++++|++|++||.||+.+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~ 43 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVE 43 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccc
Confidence 346777799999999999999999999999999999999753
No 77
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.92 E-value=9.4e-09 Score=81.81 Aligned_cols=33 Identities=45% Similarity=0.740 Sum_probs=30.2
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
+++++|+|+||||++.++|..+++.|++|+++|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456678899999999999999999999999999
No 78
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.92 E-value=2.3e-08 Score=99.17 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=35.7
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
.++++++ |..|+||||+++.||..+.++|++|.+|++|++.+
T Consensus 206 ~~ii~lv-GptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 206 HRIISLI-GQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 3555555 56799999999999999999999999999998754
No 79
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.86 E-value=3.8e-08 Score=97.98 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=35.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
++|++ -|.+|+||||+++.||..+..+|++|+++++|++.
T Consensus 242 ~vI~L-VGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIAL-IGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEE-ECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 44544 47799999999999999999999999999999865
No 80
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=98.80 E-value=3.3e-07 Score=85.43 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=37.4
Q ss_pred eEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 315 EFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 315 ~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
.+++|+.++..++..+...++.++..|+++.|+|+|++.+.
T Consensus 135 pvilV~~~~~~~i~~~~~~i~~l~~~~~~i~gvIlN~~~~~ 175 (222)
T PRK00090 135 PVILVVGVKLGCINHTLLTLEAIRARGLPLAGWVANGIPPE 175 (222)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEEccCCCc
Confidence 48999999999999999999999999999999999998664
No 81
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.75 E-value=1.2e-07 Score=95.47 Aligned_cols=44 Identities=32% Similarity=0.425 Sum_probs=36.9
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHH-HHcCCCeeEEecCCCCCch
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKF-ANHGHPTIVISTDPAHSLS 129 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~l-a~~g~~vllvd~Dp~~sls 129 (413)
..++++.|++|+||||++++||..+ ...|++|+++|+|++.+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA 267 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA 267 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH
Confidence 3456667999999999999999876 5789999999999876533
No 82
>PRK14974 cell division protein FtsY; Provisional
Probab=98.75 E-value=1.3e-07 Score=93.40 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=35.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
..++++.|.+|+||||++++||..+.+.|++|+++++|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 3466667999999999999999999999999999999964
No 83
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.72 E-value=3.1e-07 Score=94.76 Aligned_cols=42 Identities=29% Similarity=0.411 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHc--CCCeeEEecCCCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANH--GHPTIVISTDPAHS 127 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~--g~~vllvd~Dp~~s 127 (413)
+.+|+|+ |++|+||||++.+||..+++. |++|.+|++|++..
T Consensus 350 G~vIaLV-GPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi 393 (559)
T PRK12727 350 GGVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV 393 (559)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 3556555 889999999999999998875 57999999998653
No 84
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.68 E-value=4.5e-07 Score=83.16 Aligned_cols=39 Identities=36% Similarity=0.456 Sum_probs=32.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
++++-|..||||||+++-||..+..+|++|.+|.+|...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 344449999999999999999999899999999999643
No 85
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.66 E-value=2.1e-07 Score=95.07 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=34.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHH--HcCCCeeEEecCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFA--NHGHPTIVISTDPAH 126 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la--~~g~~vllvd~Dp~~ 126 (413)
++++|+ |++||||||++++||..++ +.|++|++||+|++.
T Consensus 222 ~~i~~v-GptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 222 GVVALV-GPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 445554 8899999999999999998 467999999999875
No 86
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.57 E-value=1.2e-06 Score=87.57 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=35.9
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
..++++-|=.|+||||++.-||.+|.++|+||++|-+|...
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R 140 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR 140 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence 34555569999999999999999999999999999999643
No 87
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.57 E-value=1.3e-06 Score=87.97 Aligned_cols=40 Identities=30% Similarity=0.433 Sum_probs=34.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHH----cCCCeeEEecCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFAN----HGHPTIVISTDPAH 126 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~----~g~~vllvd~Dp~~ 126 (413)
.++++.|+.||||||+++.||..+.. .|++|++|++|+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 45566699999999999999998874 57899999999754
No 88
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.54 E-value=5.3e-06 Score=81.13 Aligned_cols=43 Identities=23% Similarity=0.454 Sum_probs=36.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCc
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSL 128 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sl 128 (413)
+.+|.| .|++|+||||+..+++..+.+.|++|.+|+.|++...
T Consensus 34 ~~~i~i-~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~ 76 (300)
T TIGR00750 34 AHRVGI-TGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPF 76 (300)
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 344544 4999999999999999999999999999999987643
No 89
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.42 E-value=7.6e-06 Score=79.48 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=33.6
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++++-|-.|+||||+-+-||..+.++|++|+|.=+|.
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DT 177 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDT 177 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecch
Confidence 34444599999999999999999999999999999994
No 90
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.41 E-value=5.9e-06 Score=79.34 Aligned_cols=40 Identities=30% Similarity=0.435 Sum_probs=34.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
.+++++ |++|+||||+...++..+..+|++|.++++|++.
T Consensus 76 ~~i~~~-G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 76 QTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 445554 8899999999999999999889999999999764
No 91
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.36 E-value=8.9e-06 Score=84.04 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
++.++|.+.++|+||||++++|+..|+++|++|..+..+|
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gp 42 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGP 42 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCC
Confidence 4679999999999999999999999999999999998743
No 92
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=98.32 E-value=7.9e-06 Score=70.26 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=38.1
Q ss_pred eEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 315 EFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 315 ~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
.+++|++|+..++.++...++.++..|+++.++|.|+..+.
T Consensus 70 ~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~ 110 (134)
T cd03109 70 PAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEK 110 (134)
T ss_pred CEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCc
Confidence 47999999999999999999999999999999999998764
No 93
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.32 E-value=2.4e-05 Score=77.31 Aligned_cols=43 Identities=26% Similarity=0.481 Sum_probs=37.3
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCc
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSL 128 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sl 128 (413)
..++-+.|.+|+||||+...|+..+...|++|.++..||+...
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~ 98 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTR 98 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccc
Confidence 3455556899999999999999999999999999999997653
No 94
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.26 E-value=2.6e-06 Score=82.63 Aligned_cols=40 Identities=35% Similarity=0.497 Sum_probs=34.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHc-C-CCeeEEecCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANH-G-HPTIVISTDPAH 126 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~-g-~~vllvd~Dp~~ 126 (413)
++++|+ |.+|+||||+++.||..++.+ | ++|.+|++|++.
T Consensus 195 ~vi~~v-GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 195 GVIALV-GPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 445444 889999999999999999976 5 899999999765
No 95
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.25 E-value=4.1e-05 Score=73.29 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=41.0
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC--Cchhhhhcc
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH--SLSDSFAQD 135 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~--sls~~lg~~ 135 (413)
+..+|-++ |-||+||||+.-.|...|.++|+||.++-.||.. +=..+||..
T Consensus 50 ~a~viGIT-G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 50 NAHVIGIT-GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred CCcEEEec-CCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 34566665 9999999999999999999999999999999854 334455443
No 96
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.23 E-value=6.1e-06 Score=89.47 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=34.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+.+.|.+...|+|||+++..|+..|.++|+||..+--
T Consensus 3 k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 3 RSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 5688999999999999999999999999999998763
No 97
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=4.6e-05 Score=82.35 Aligned_cols=38 Identities=34% Similarity=0.480 Sum_probs=32.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHH-HcC-CCeeEEecCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFA-NHG-HPTIVISTDPA 125 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la-~~g-~~vllvd~Dp~ 125 (413)
++.+-|..|+||||+.+.||..+. ..| ++|.+|++|.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~ 226 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSF 226 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCccc
Confidence 445559999999999999999885 566 59999999964
No 98
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=98.16 E-value=9.4e-06 Score=74.36 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=37.1
Q ss_pred eEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 315 EFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 315 ~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
.+++|+....-++.++.-.++.++..|+++.|+|+|++.++
T Consensus 131 ~vIlV~~~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~~~~~ 171 (199)
T PF13500_consen 131 PVILVASGRLGTINHTLLTIEALKQRGIRVLGVILNRVPEP 171 (199)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHCTTS-EEEEEEEECTCC
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEEECCCCH
Confidence 68999999999999999999999999999999999997554
No 99
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.13 E-value=5.6e-05 Score=70.27 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=39.6
Q ss_pred eEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCCC
Q 043873 315 EFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPS 356 (413)
Q Consensus 315 ~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~ 356 (413)
.+++|+...--+++.+.-.++.++..|+++.|+|.|+..|..
T Consensus 138 pvILV~~~~LGtINHtlLt~eal~~~gl~l~G~I~n~~~~~~ 179 (223)
T COG0132 138 PVILVVGIKLGTINHTLLTVEALRARGLPLAGWVANGINPEL 179 (223)
T ss_pred CEEEEecCCccHHHHHHHHHHHHHHCCCCEEEEEEccCCCch
Confidence 489999999999999999999999999999999999998764
No 100
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.10 E-value=1.8e-05 Score=76.23 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
|++|.|++.| |+||||++.+|+..|.++| +|.+|+.|+.+
T Consensus 1 M~~i~i~G~~-gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~ 40 (274)
T PRK14493 1 MKVLSIVGYK-ATGKTTLVERLVDRLSGRG-RVGTVKHMDTE 40 (274)
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHHHhCC-CEEEEEEcCCC
Confidence 4677777665 9999999999999999999 89999999854
No 101
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.99 E-value=0.00012 Score=75.62 Aligned_cols=38 Identities=37% Similarity=0.575 Sum_probs=31.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHH-HcC-CCeeEEecCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFA-NHG-HPTIVISTDPA 125 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la-~~g-~~vllvd~Dp~ 125 (413)
|+.+-|..|+||||+.+.||..+. ++| ++|.+|++|++
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~ 297 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY 297 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence 444559999999999999999886 566 59999999974
No 102
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.97 E-value=0.00016 Score=68.31 Aligned_cols=41 Identities=22% Similarity=0.388 Sum_probs=32.4
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
..+|-+ +|.+|+||||+.-.|+..+.+.|+||.++-.||..
T Consensus 29 a~~iGi-TG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS 69 (266)
T PF03308_consen 29 AHVIGI-TGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSS 69 (266)
T ss_dssp SEEEEE-EE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG
T ss_pred ceEEEe-eCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCC
Confidence 355555 59999999999999999999999999999999854
No 103
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=0.00015 Score=72.65 Aligned_cols=38 Identities=34% Similarity=0.500 Sum_probs=32.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHH-cC-CCeeEEecCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFAN-HG-HPTIVISTDPA 125 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~-~g-~~vllvd~Dp~ 125 (413)
++++.|..|+||||+++.||..+.. .| ++|.+|++|..
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 4556699999999999999998764 57 69999999964
No 104
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=97.95 E-value=0.00044 Score=65.01 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=37.3
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
..+++|+....-.+..+.-..+.++..|+++.|+|+|++.+.
T Consensus 136 ~pvilV~~~~lg~in~~lLt~~~l~~~~~~~~gvV~N~~~~~ 177 (231)
T PRK12374 136 LPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRINPG 177 (231)
T ss_pred CCEEEEECCCcChHHHHHHHHHHHHhCCCcEEEEEEeCccCc
Confidence 358999988888899999999999999999999999998653
No 105
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00019 Score=70.76 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=38.9
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC-CCCchhhhhc
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP-AHSLSDSFAQ 134 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp-~~sls~~lg~ 134 (413)
..++++-|-.|+||||++.-+|.++.++|+||+||=+|. ++...+-+.+
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkq 150 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQ 150 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHH
Confidence 345555589999999999999999999999999999996 3444444433
No 106
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.85 E-value=0.00012 Score=73.53 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=30.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEE
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVI 120 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllv 120 (413)
.+++.+...|+||||++..|..+|.++|++|--.
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 4788889999999999999999999999887443
No 107
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.83 E-value=0.0004 Score=69.54 Aligned_cols=39 Identities=36% Similarity=0.515 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHH--HcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFA--NHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la--~~g~~vllvd~Dp 124 (413)
+++|+ +-|.-||||||+-+-||+.+. ...+||.+|.+|.
T Consensus 203 ~~vi~-LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt 243 (407)
T COG1419 203 KRVIA-LVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT 243 (407)
T ss_pred CcEEE-EECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence 45444 449999999999999999999 3456999999993
No 108
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.72 E-value=6.3e-05 Score=69.82 Aligned_cols=53 Identities=32% Similarity=0.447 Sum_probs=45.7
Q ss_pred ccccchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 72 ETVAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 72 ~~~~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+++++|.++.+ ....+..+.|.+|+||||++.++|..++.+|.+|+++|+|.
T Consensus 3 TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 3 TGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred cchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 577889999975 34557777799999999999999999999999999999874
No 109
>PHA02542 41 41 helicase; Provisional
Probab=97.70 E-value=0.00048 Score=71.43 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=51.0
Q ss_pred CCcccccchHHhh-cC-CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC-Cchhhh
Q 043873 69 TPRETVAGFDEMV-AG-TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH-SLSDSF 132 (413)
Q Consensus 69 ~~~~~~~~~~~~~-~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~-sls~~l 132 (413)
....++..|+.++ .+ ...-++++++.+|+||||++.|+|...++.|++|++++++-.. .+...+
T Consensus 171 gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 171 KIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred ccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHH
Confidence 3456789999988 33 2345888889999999999999999999999999999998543 344444
No 110
>PRK00784 cobyric acid synthase; Provisional
Probab=97.66 E-value=0.0011 Score=69.35 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=33.1
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
++.+.|++...|||||++++.|+..|.++|++|..+-
T Consensus 2 ~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~K 38 (488)
T PRK00784 2 AKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFK 38 (488)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEeccc
Confidence 3568999999999999999999999999999988653
No 111
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.64 E-value=0.0022 Score=66.82 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=30.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
|.|++.-.+||||++++.|+..|.++|++|..+-.
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 45777889999999999999999999999986543
No 112
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.60 E-value=0.00012 Score=68.21 Aligned_cols=54 Identities=30% Similarity=0.377 Sum_probs=46.8
Q ss_pred CcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 70 PRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 70 ~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
...+++++|+++.++ ...+..+.|.+|+|||+++.++|...++.|.+|++||++
T Consensus 5 i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 5 LPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred ccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 346789999999753 345777779999999999999999999999999999998
No 113
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.55 E-value=0.0011 Score=62.78 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=28.4
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 93 ~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
|..|+||||.+..+...+..+|++|.+|-.||+..
T Consensus 3 GpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~ 37 (238)
T PF03029_consen 3 GPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVE 37 (238)
T ss_dssp ESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhc
Confidence 78999999999999999999999999999999754
No 114
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0011 Score=67.10 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=35.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
-++++.|-.||||||.-+-+|..|-+.+.||++.-||+..
T Consensus 379 YVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFR 418 (587)
T KOG0781|consen 379 YVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFR 418 (587)
T ss_pred eEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchh
Confidence 3444559999999999999999999999999999999744
No 115
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.36 E-value=0.00073 Score=63.96 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=36.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
++++++-|-.|+||||....|-.++...+.+--+|.+||+-
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv 59 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAV 59 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHH
Confidence 45566669999999999999999999999999999999863
No 116
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=97.33 E-value=0.00029 Score=72.92 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=46.5
Q ss_pred CCcEEEEEcCCC---CccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccC
Q 043873 84 TQRKHYMLGGKG---GVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLS 137 (413)
Q Consensus 84 ~~~~i~~~s~kg---GvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~ 137 (413)
..++|+|+|..+ |.||||+++|||..|++.|+||+++ =++++++..|+....
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli--LR~Psl~~~fg~kgg 108 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA--LREPSLGPVFGIKGG 108 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE--EecCCcccccCCCCC
Confidence 458999999999 9999999999999999999999999 357899999987654
No 117
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.29 E-value=0.00041 Score=66.46 Aligned_cols=53 Identities=25% Similarity=0.436 Sum_probs=44.9
Q ss_pred cccccchHHhhc--------------C--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 71 RETVAGFDEMVA--------------G--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 71 ~~~~~~~~~~~~--------------~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..++++|++++. + +...+.++.|.+|+||||++.++|...+++|.+|+.++++
T Consensus 5 ~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 5 PTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred cCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 457788888872 2 2455777789999999999999999999999999999997
No 118
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.25 E-value=0.0069 Score=62.11 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=31.8
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
+.++|.+...|+||||+++.|+.+|.++|.+|--+=
T Consensus 2 ~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K 37 (433)
T PRK13896 2 KGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAK 37 (433)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEe
Confidence 458889999999999999999999999999985443
No 119
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=97.24 E-value=0.00042 Score=70.97 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=46.8
Q ss_pred CCcEEEEEcCCC---CccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCC
Q 043873 84 TQRKHYMLGGKG---GVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSG 138 (413)
Q Consensus 84 ~~~~i~~~s~kg---GvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~ 138 (413)
..++|+|+|.-+ |+||||++++||..|++.|+||+++ =+++|++..||.....
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~--LR~PSlg~~fg~kgga 92 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC--LREPSLGPTFGIKGGA 92 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE--EecCCcCcccCCCCCC
Confidence 458899999888 9999999999999999999999988 3578999999887543
No 120
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.24 E-value=0.0063 Score=62.94 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=31.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
++|.+...|+||||+++.|+.+|+++|++|..+=
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK 35 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFK 35 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEc
Confidence 6788899999999999999999999999998875
No 121
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.0006 Score=60.64 Aligned_cols=49 Identities=22% Similarity=0.326 Sum_probs=41.8
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC-CCCchhhhhc
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP-AHSLSDSFAQ 134 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp-~~sls~~lg~ 134 (413)
..++-+.|-.|+||||+|..|...|.++|++|-++|.|- ++.|..-+|-
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgF 72 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGF 72 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCC
Confidence 356667799999999999999999999999999999994 6777665554
No 122
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.15 E-value=0.00082 Score=64.26 Aligned_cols=55 Identities=27% Similarity=0.486 Sum_probs=48.1
Q ss_pred cccccchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 71 RETVAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 71 ~~~~~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
..+++++++.+.+ +...++++.|.+|+|||+++.+++...++.|.+|+.|.+|-.
T Consensus 6 ~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 6 PTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 4678889999985 455677777999999999999999999999999999999854
No 123
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.12 E-value=0.0009 Score=61.57 Aligned_cols=47 Identities=32% Similarity=0.442 Sum_probs=38.1
Q ss_pred HHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 78 DEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 78 ~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
|+++.++ ...+..+.|.+|+|||+++.+++...++.|.+|+.||++-
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4444442 3456666799999999999999999999999999999973
No 124
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.10 E-value=0.00084 Score=63.06 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=45.8
Q ss_pred CcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 70 PRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 70 ~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
...++.+||+++.++ ...++++.|.+|+||||++.+++...+++|.+|++++++
T Consensus 7 ~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 7 ISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred EecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 346789999999753 345666669999999999999999988999999999997
No 125
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.09 E-value=0.0025 Score=63.63 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=33.8
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
.+++++ |.-++||||+++-||..+-++|+||.+||+|+.
T Consensus 74 ~~vmvv-G~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvG 112 (398)
T COG1341 74 GVVMVV-GPVDSGKSTLTTYLANKLLARGRKVAIIDADVG 112 (398)
T ss_pred cEEEEE-CCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCC
Confidence 345555 667899999999999999999999999999983
No 126
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.07 E-value=0.015 Score=53.17 Aligned_cols=41 Identities=27% Similarity=0.422 Sum_probs=36.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
+.-.++-|..|+||||.+.++-.+.-..|+++-+|-.||+.
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAa 43 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAA 43 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHH
Confidence 34456669999999999999999999999999999999965
No 127
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=97.04 E-value=0.00077 Score=69.72 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=46.8
Q ss_pred CCcEEEEEcCCC---CccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCC
Q 043873 84 TQRKHYMLGGKG---GVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSG 138 (413)
Q Consensus 84 ~~~~i~~~s~kg---GvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~ 138 (413)
..++|.|+|--+ |.||||+|++||..|++.|+|| ||+=+++|++..||.....
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~LR~Pslg~~fg~kgga 108 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CACIRQPSMGPVFGVKGGA 108 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEEeccCCcCCccCCCCCC
Confidence 468999999888 9999999999999999999999 7775578999999887653
No 128
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.04 E-value=0.00086 Score=62.58 Aligned_cols=53 Identities=23% Similarity=0.426 Sum_probs=43.0
Q ss_pred ccccchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEecCC
Q 043873 72 ETVAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVISTDP 124 (413)
Q Consensus 72 ~~~~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~Dp 124 (413)
.++.+||+++.+ +...+++..|.+|+|||+++.+++...+++ |.+|++|.++.
T Consensus 3 TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 3 TGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp -SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 578899999965 244566777999999999999999999999 99999999973
No 129
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.03 E-value=0.00082 Score=59.17 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=34.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++.++|..|+||||+|..|...|...|.+|.++|.|-
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~ 40 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDN 40 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcc
Confidence 46677799999999999999999999999999999993
No 130
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.00 E-value=0.0017 Score=60.13 Aligned_cols=39 Identities=28% Similarity=0.524 Sum_probs=34.7
Q ss_pred EcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC-Cch
Q 043873 91 LGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH-SLS 129 (413)
Q Consensus 91 ~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~-sls 129 (413)
+-|.+|+||||-+...-..+...|++|.+|-.||+. +++
T Consensus 7 VIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~ 46 (290)
T KOG1533|consen 7 VIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLP 46 (290)
T ss_pred EEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCC
Confidence 349999999999999999999999999999999964 444
No 131
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.98 E-value=0.0015 Score=61.67 Aligned_cols=54 Identities=24% Similarity=0.474 Sum_probs=46.4
Q ss_pred cccccchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 71 RETVAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 71 ~~~~~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++.+|++++.+ +...++++.|.+|+|||+++.+++...+++|.+|++|.++-
T Consensus 4 ~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 4 KTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred ccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 3578899998875 34567777899999999999999999889999999999984
No 132
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.97 E-value=0.00088 Score=64.22 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=45.4
Q ss_pred CCcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~Dp 124 (413)
....+++.++.++.+ ....++++.|.+|+||||++.++|..++.. |.+|++++++.
T Consensus 12 ~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 12 EVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred CCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 345677788877754 233477788999999999999999999987 99999999974
No 133
>PRK07667 uridine kinase; Provisional
Probab=96.95 E-value=0.0015 Score=59.55 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+.++-++|.+|+||||+|..|+..+.+.|.+|.+++.|.
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 3467777899999999999999999999999999999995
No 134
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.94 E-value=0.0018 Score=56.14 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=29.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCee-EEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTI-VISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vl-lvd~Dp 124 (413)
+|.|++ .-|+||||++..|...|.++|++|. +.+.|+
T Consensus 2 vv~VvG-~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 2 VVQVVG-PKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 566665 5599999999999999999999999 889987
No 135
>PRK05973 replicative DNA helicase; Provisional
Probab=96.92 E-value=0.0016 Score=61.46 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=35.2
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++.|.+|+|||+++.++|...+++|++|++++++-
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 457777899999999999999999999999999999873
No 136
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.86 E-value=0.0015 Score=58.42 Aligned_cols=38 Identities=34% Similarity=0.483 Sum_probs=33.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
++++.|-+|+||||++.+|+..+...|.++.++|.|..
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 55556999999999999999999999999999999953
No 137
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.84 E-value=0.0023 Score=62.92 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=45.7
Q ss_pred CCcccccchHHhhc-C--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 69 TPRETVAGFDEMVA-G--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 69 ~~~~~~~~~~~~~~-~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
....++.+||.++. + +...+..+.|.+|+||||+|.+++...++.|.+|++||+.
T Consensus 35 ~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 35 TISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred eecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 34567889999987 4 3344666668899999999999999999999999999986
No 138
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.83 E-value=0.0024 Score=59.51 Aligned_cols=52 Identities=25% Similarity=0.415 Sum_probs=42.2
Q ss_pred cccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 73 TVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 73 ~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++++++++.++ ...++++.|.+|+|||+++.+++...+++|++|++++++-
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 356788887642 3445566788999999999999999999999999999974
No 139
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.035 Score=56.71 Aligned_cols=37 Identities=41% Similarity=0.618 Sum_probs=28.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHH-HcC-CCeeEEecCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFA-NHG-HPTIVISTDP 124 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la-~~g-~~vllvd~Dp 124 (413)
++.+-|..|+||||+.+-||..+. ..| .+|.++-+|.
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~ 231 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS 231 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 344449999999999999998654 333 6888888874
No 140
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.80 E-value=0.0026 Score=59.45 Aligned_cols=53 Identities=28% Similarity=0.454 Sum_probs=44.0
Q ss_pred ccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 72 ETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 72 ~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++.++|+++.++ ...++++.|.+|+||||++.+++...++.|.+|++++++.
T Consensus 4 tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 4 TGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 5678899988642 3456666799999999999999998888999999999863
No 141
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.79 E-value=0.0017 Score=58.33 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=33.2
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++.|.+|+|||+++.+++...++.|.+|++++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 466799999999999999999999999999999874
No 142
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.74 E-value=0.0025 Score=60.89 Aligned_cols=54 Identities=24% Similarity=0.409 Sum_probs=44.4
Q ss_pred cccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEecCC
Q 043873 71 RETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVISTDP 124 (413)
Q Consensus 71 ~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~Dp 124 (413)
..+++.++..+.+ ...-+.++.+.+|+|||+++.++|..++.. |++|+.++.+.
T Consensus 3 ~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm 58 (259)
T PF03796_consen 3 PTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEM 58 (259)
T ss_dssp -SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS
T ss_pred CCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 4577888888865 334588888999999999999999999997 69999999874
No 143
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.73 E-value=0.0032 Score=62.08 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=46.1
Q ss_pred CCcccccchHHhhc-C--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 69 TPRETVAGFDEMVA-G--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 69 ~~~~~~~~~~~~~~-~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
....++..+|.++. + +...+..+.|.+|+||||+|.+++...++.|.+|++||+.
T Consensus 35 ~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 35 VIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred eecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 35568899999988 4 2344666668999999999999999999999999999985
No 144
>PRK04328 hypothetical protein; Provisional
Probab=96.72 E-value=0.003 Score=60.14 Aligned_cols=54 Identities=22% Similarity=0.453 Sum_probs=45.7
Q ss_pred cccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 71 RETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 71 ~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++.+||+++.++ ...++++.|.+|+|||+++.+++...++.|.++++|+++-
T Consensus 6 ~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 6 KTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred cCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 45788999998763 3456666799999999999999999889999999999974
No 145
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.70 E-value=0.0041 Score=57.94 Aligned_cols=30 Identities=43% Similarity=0.555 Sum_probs=24.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+++-|++|+||||+|.+++ .++++++.|-
T Consensus 14 ~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~ 43 (220)
T TIGR01618 14 MYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDM 43 (220)
T ss_pred EEEEECCCCCCHHHHHHhcC-------CCCEEEeccc
Confidence 35555999999999998873 5799999995
No 146
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=96.69 E-value=0.016 Score=60.17 Aligned_cols=40 Identities=23% Similarity=0.225 Sum_probs=31.6
Q ss_pred eEEEEecCccchHHHHHH----HHHHHHhcCCCcceEEEecccC
Q 043873 315 EFVIVTIPTVMAISESSR----LHASLRKECIPVQRLIVNQVLP 354 (413)
Q Consensus 315 ~~vlVt~pe~~~~~ea~r----~~~~l~~~gi~v~gvVvN~v~~ 354 (413)
.+++|+.....++..+.- +.+.++..++++.|+|+|++.+
T Consensus 352 PVILV~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~ 395 (476)
T PRK06278 352 PVYIVSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYN 395 (476)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCc
Confidence 489999999888655544 3456667799999999999975
No 147
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.67 E-value=0.002 Score=61.07 Aligned_cols=35 Identities=26% Similarity=0.561 Sum_probs=32.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
-+++.|++|+|||+++.++|..+.+.|++|+++++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 56777999999999999999999999999999964
No 148
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.65 E-value=0.0035 Score=58.95 Aligned_cols=48 Identities=23% Similarity=0.467 Sum_probs=38.9
Q ss_pred hHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEecCC
Q 043873 77 FDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVISTDP 124 (413)
Q Consensus 77 ~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~Dp 124 (413)
|+.++.+ ....+++++|.+|+|||+++.+++..++.. |.+|+.++++-
T Consensus 3 LD~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 3 LDNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred hhhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 4444442 223477888999999999999999999987 99999999985
No 149
>PRK06696 uridine kinase; Validated
Probab=96.63 E-value=0.0032 Score=58.81 Aligned_cols=41 Identities=32% Similarity=0.409 Sum_probs=36.3
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
....++.++|.+|+||||+|..|+..|...|.+|+.+.+|-
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Dd 60 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDD 60 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccc
Confidence 34568888899999999999999999998899999988884
No 150
>PRK06526 transposase; Provisional
Probab=96.63 E-value=0.0013 Score=62.79 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=46.3
Q ss_pred cccccccccccccCCccccCCCCCCCccCCCCCCcccccchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCC
Q 043873 37 TSLCRIARSFEFVSAPLYRIPLKSPFQVRSISTPRETVAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHP 116 (413)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~ 116 (413)
...+.++..+.+..+++...+...+...... ..+ +++..... +++.|++|+|||++|.+++..+.+.|++
T Consensus 59 lk~a~~p~~~~le~fd~~~~~~~~~~~~~~l-------~~~-~fi~~~~n--lll~Gp~GtGKThLa~al~~~a~~~g~~ 128 (254)
T PRK06526 59 IRAARFPARKSLEEFDFDHQRSLKRDTIAHL-------GTL-DFVTGKEN--VVFLGPPGTGKTHLAIGLGIRACQAGHR 128 (254)
T ss_pred HHhCCCCCCCChhhccCccCCCcchHHHHHH-------hcC-chhhcCce--EEEEeCCCCchHHHHHHHHHHHHHCCCc
Confidence 3344555556666666655443322211111 111 13333333 4555999999999999999999999999
Q ss_pred eeEEec
Q 043873 117 TIVIST 122 (413)
Q Consensus 117 vllvd~ 122 (413)
|+++.+
T Consensus 129 v~f~t~ 134 (254)
T PRK06526 129 VLFATA 134 (254)
T ss_pred hhhhhH
Confidence 987543
No 151
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.63 E-value=0.0035 Score=65.46 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=48.0
Q ss_pred CcccccchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 70 PRETVAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 70 ~~~~~~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
...++.++++++.+ ....+++++|.+|+||||++.+++...+++|.+|+.+..+
T Consensus 245 ~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e 300 (484)
T TIGR02655 245 VSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE 300 (484)
T ss_pred cCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 45688999999987 3456778889999999999999999999999999999987
No 152
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.62 E-value=0.0024 Score=55.24 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=33.8
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
+++.|++|+||||++..++..++..|.+|++++.+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 45669999999999999999999999999999998543
No 153
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.60 E-value=0.0043 Score=64.09 Aligned_cols=56 Identities=20% Similarity=0.420 Sum_probs=47.9
Q ss_pred CCcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
....++.+||+++.++ ...++++.|.+|+||||++.++|..++++|.+|+.+++.-
T Consensus 61 ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 61 RISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred cccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3556889999999763 3457777899999999999999999999999999999863
No 154
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.58 E-value=0.0044 Score=64.13 Aligned_cols=56 Identities=18% Similarity=0.378 Sum_probs=48.1
Q ss_pred CCCcccccchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 68 STPRETVAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 68 ~~~~~~~~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.....++.+||.++.+ ....+++++|.+|+||||++.++|..+++.|.+|++|+.+
T Consensus 74 ~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E 131 (454)
T TIGR00416 74 PRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE 131 (454)
T ss_pred CccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 3456788999999975 3445777889999999999999999999999999999987
No 155
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.57 E-value=0.0044 Score=56.67 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=34.3
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
.++++.|++|+||||++..|+..+...|..++++|.|.-
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 455666999999999999999999989999999999863
No 156
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.55 E-value=0.0049 Score=62.09 Aligned_cols=56 Identities=20% Similarity=0.434 Sum_probs=47.7
Q ss_pred CCCcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 68 STPRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 68 ~~~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.....++.+++.++.++ ...++++.|.+|+||||++.++|..+++.|.+|++++..
T Consensus 62 ~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 62 ERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 34556889999999753 345777889999999999999999999999999999986
No 157
>PF13245 AAA_19: Part of AAA domain
Probab=96.54 E-value=0.0042 Score=47.85 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=31.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHc----CCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANH----GHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~----g~~vllvd~D 123 (413)
+.++.|-+|+|||+++++++..+... |.+|+++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 56677999999999999999999876 8899999654
No 158
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.53 E-value=0.0026 Score=60.43 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=33.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
++++.|.+|+||||+|..|+..+...|.+|.+++.|.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~ 37 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL 37 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence 3577799999999999999999999999999998884
No 159
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.50 E-value=0.0046 Score=63.41 Aligned_cols=56 Identities=21% Similarity=0.400 Sum_probs=46.7
Q ss_pred CCcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHH-HcCCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la-~~g~~vllvd~Dp 124 (413)
....++..++.++.+ ...-+++++|.+|+|||+++.++|..+| ++|++|++++++-
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm 233 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEM 233 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 345678899998875 2344778889999999999999999998 6899999999884
No 160
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.50 E-value=0.0029 Score=60.43 Aligned_cols=46 Identities=26% Similarity=0.391 Sum_probs=35.7
Q ss_pred cchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 75 AGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 75 ~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
..+.+++.+.. -+++.|++|||||.+|+++|..+.+.|.+|+++.+
T Consensus 96 ~~~~~~~~~~~--nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 96 ASLVEFFERGE--NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred HHHHHHhccCC--cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 34444555322 34455999999999999999999988999999975
No 161
>PRK09354 recA recombinase A; Provisional
Probab=96.50 E-value=0.0049 Score=61.27 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=46.3
Q ss_pred CCcccccchHHhhc-C--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 69 TPRETVAGFDEMVA-G--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 69 ~~~~~~~~~~~~~~-~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
....++..|+.++. + +...+..+.|..|+||||++.+++...++.|.+++.||+.
T Consensus 40 ~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E 97 (349)
T PRK09354 40 VISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 97 (349)
T ss_pred eecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc
Confidence 34567899999998 5 2345666668999999999999999999999999999986
No 162
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=96.48 E-value=0.12 Score=57.23 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=52.4
Q ss_pred eEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccCC
Q 043873 315 EFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLV 394 (413)
Q Consensus 315 ~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~~ 394 (413)
.++||+.+.--.++.+.-.++.|+..|+++.|||+|.-. . ...++|...-. .+.|++.+|..
T Consensus 216 PvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~---~-----------~N~~~l~~~~~----~~~pv~~lp~~ 277 (817)
T PLN02974 216 PAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG---L-----------SNEKALLSYLS----NRVPVFVLPPV 277 (817)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc---c-----------chHHHHHHHHh----cCCcEEeCCCC
Confidence 489999999999999999999999999999999999521 1 12244444322 27899999987
Q ss_pred CCCCCC
Q 043873 395 DVEIRG 400 (413)
Q Consensus 395 ~~e~~g 400 (413)
+..+..
T Consensus 278 p~~~~~ 283 (817)
T PLN02974 278 PEDPGD 283 (817)
T ss_pred CCCcch
Confidence 776644
No 163
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.46 E-value=0.0035 Score=54.78 Aligned_cols=36 Identities=33% Similarity=0.520 Sum_probs=32.7
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++.|.+|+||||+|..|+..+...|.++.++|.|.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 456699999999999999999999999999999885
No 164
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.45 E-value=0.0049 Score=57.30 Aligned_cols=53 Identities=26% Similarity=0.315 Sum_probs=43.0
Q ss_pred ccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcC------CCeeEEecCC
Q 043873 72 ETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFANHG------HPTIVISTDP 124 (413)
Q Consensus 72 ~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g------~~vllvd~Dp 124 (413)
.++..+|.++.++ ...+..+.|.+|+|||+++.++|...+..| .+|+.||++-
T Consensus 3 tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 3 TGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 4678889888653 334556668999999999999999988877 8999999873
No 165
>PRK08181 transposase; Validated
Probab=96.43 E-value=0.0031 Score=60.71 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=47.0
Q ss_pred ccccccccccCCccccCCCCCCCccCCCCCCcccccchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeE
Q 043873 40 CRIARSFEFVSAPLYRIPLKSPFQVRSISTPRETVAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIV 119 (413)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vll 119 (413)
+.++..+.+..+++...+...+.... .....+.+++.... +++.|..|+|||.++..+|..+.++|++|+.
T Consensus 69 A~~p~~~tle~fd~~~~~~~~~~~~~-------~L~~~~~~~~~~~n--lll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f 139 (269)
T PRK08181 69 AHLPPGKTLDSFDFEAVPMVSKAQVM-------AIAAGDSWLAKGAN--LLLFGPPGGGKSHLAAAIGLALIENGWRVLF 139 (269)
T ss_pred CCCCCCCCHhhCCccCCCCCCHHHHH-------HHHHHHHHHhcCce--EEEEecCCCcHHHHHHHHHHHHHHcCCceee
Confidence 33444455666655544332222111 11223345554333 4555999999999999999999999999999
Q ss_pred Eec
Q 043873 120 IST 122 (413)
Q Consensus 120 vd~ 122 (413)
+++
T Consensus 140 ~~~ 142 (269)
T PRK08181 140 TRT 142 (269)
T ss_pred eeH
Confidence 875
No 166
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=96.43 E-value=0.052 Score=50.99 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=34.2
Q ss_pred EEEEcC-CCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 88 HYMLGG-KGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 88 i~~~s~-kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
|.|++| -.|.||=.+|+.++..|..+|++|-.+-.||--|
T Consensus 3 i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN 43 (255)
T cd03113 3 IFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLN 43 (255)
T ss_pred EEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeeccccc
Confidence 444444 5899999999999999999999999999998644
No 167
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.42 E-value=0.0039 Score=56.26 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=33.0
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+.++|..|+||||+|..|+..+...|.++.+|..|-
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Dd 37 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDD 37 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhh
Confidence 456799999999999999999999999999999994
No 168
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=96.36 E-value=0.0071 Score=56.72 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
|+++.|++. .|+||||++..|+..|.++|+||.++..
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 356666655 6999999999999999999999999974
No 169
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.35 E-value=0.0037 Score=51.94 Aligned_cols=28 Identities=36% Similarity=0.641 Sum_probs=22.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCee
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTI 118 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vl 118 (413)
++++.|.+|+||||+|..||..+ |..++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~i 28 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPVI 28 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeEE
Confidence 45677999999999999999877 55443
No 170
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.30 E-value=0.0057 Score=57.21 Aligned_cols=53 Identities=25% Similarity=0.273 Sum_probs=41.9
Q ss_pred ccccchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHHc------CCCeeEEecCC
Q 043873 72 ETVAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANH------GHPTIVISTDP 124 (413)
Q Consensus 72 ~~~~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~------g~~vllvd~Dp 124 (413)
.+++++|.++.+ ....+..+.|.+|+|||+++.+++...... +.+|+.||++.
T Consensus 3 tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 3 TGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 467788888875 234566777999999999999999876544 37999999975
No 171
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.27 E-value=0.0051 Score=55.59 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=30.5
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHH----------cCCCeeEEecCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFAN----------HGHPTIVISTDPA 125 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~----------~g~~vllvd~Dp~ 125 (413)
-+.++.|.+|+||||++.++|..++. .+.+|++|++|-.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 36777799999999999999999996 5679999998844
No 172
>PRK06762 hypothetical protein; Provisional
Probab=96.27 E-value=0.0052 Score=54.29 Aligned_cols=36 Identities=31% Similarity=0.532 Sum_probs=29.8
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++.|..|+||||+|..|+..+ |..+.+++.|.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~ 37 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDV 37 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHH
Confidence 3566778999999999999999887 55788888774
No 173
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.26 E-value=0.0072 Score=63.16 Aligned_cols=53 Identities=23% Similarity=0.464 Sum_probs=45.2
Q ss_pred cccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEecC
Q 043873 71 RETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVISTD 123 (413)
Q Consensus 71 ~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~D 123 (413)
..++++||+++.++ ...++++.|.+|+||||+|.+++..-+++ |.+++.|.++
T Consensus 4 ~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 4 RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 45789999999763 45677777999999999999999987776 9999999998
No 174
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.24 E-value=0.0077 Score=56.61 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=39.1
Q ss_pred cchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 75 AGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 75 ~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++.++.+ +...+..+.|..|+||||++.+++..++++|.+++.++++-
T Consensus 11 ~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~ 62 (230)
T PRK08533 11 DELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL 62 (230)
T ss_pred eeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 445555543 22346666799999999999999999999999999999773
No 175
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.20 E-value=0.0064 Score=53.55 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=30.7
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+.|..|+||||++..|+..+.++|+||.+|..|
T Consensus 3 ~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 3 QIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 3447789999999999999999999999999987
No 176
>PRK05595 replicative DNA helicase; Provisional
Probab=96.19 E-value=0.0082 Score=62.03 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=45.2
Q ss_pred CcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHH-HcCCCeeEEecCC
Q 043873 70 PRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la-~~g~~vllvd~Dp 124 (413)
...++..++.++.+ ...-+++.++.+|+|||+++.|+|..+| ++|++|++++..-
T Consensus 184 i~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEm 240 (444)
T PRK05595 184 VASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM 240 (444)
T ss_pred ccCChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 45677888888764 2345778889999999999999999887 6799999999874
No 177
>PRK08506 replicative DNA helicase; Provisional
Probab=96.18 E-value=0.0085 Score=62.37 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=47.1
Q ss_pred CcccccchHHhhcCC-CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 70 PRETVAGFDEMVAGT-QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 70 ~~~~~~~~~~~~~~~-~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
...++..++.++.+- ..-++++++.+|+|||+++.|+|..++++|++|+++...-.
T Consensus 175 i~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs 231 (472)
T PRK08506 175 LDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMP 231 (472)
T ss_pred ccCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCC
Confidence 456788888887652 34578888999999999999999999999999999998853
No 178
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.17 E-value=0.0092 Score=61.40 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=46.4
Q ss_pred CcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCCC
Q 043873 70 PRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDPA 125 (413)
Q Consensus 70 ~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp~ 125 (413)
...++.+|+.++.+ ...-+++++|.+|+|||+++.++|..+|. .|++|+++.++-.
T Consensus 178 i~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~ 235 (434)
T TIGR00665 178 VPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMS 235 (434)
T ss_pred ccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCC
Confidence 45678889988764 23457888899999999999999999986 6999999999853
No 179
>PHA00729 NTP-binding motif containing protein
Probab=96.15 E-value=0.0082 Score=56.05 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=21.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHH
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la 111 (413)
..+++.|.+|+||||+|..+|..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456668999999999999999875
No 180
>PRK05748 replicative DNA helicase; Provisional
Probab=96.05 E-value=0.0096 Score=61.58 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=46.9
Q ss_pred CCcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCCC
Q 043873 69 TPRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDPA 125 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp~ 125 (413)
....++..|+.++.+ ...-+++++|.+|+|||+++.++|...|. .|++|+++.+.-.
T Consensus 185 gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms 243 (448)
T PRK05748 185 GIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMG 243 (448)
T ss_pred CccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 356688899988865 23457788899999999999999999884 6999999998853
No 181
>PRK08760 replicative DNA helicase; Provisional
Probab=96.03 E-value=0.01 Score=61.81 Aligned_cols=55 Identities=25% Similarity=0.270 Sum_probs=45.5
Q ss_pred CcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCC
Q 043873 70 PRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp 124 (413)
...++..|+.+..+ ...-++++.+.+|+|||+++.|+|...|. .|++|+++..+-
T Consensus 212 i~TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEM 268 (476)
T PRK08760 212 LPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM 268 (476)
T ss_pred ccCCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccC
Confidence 45678889988765 23457788899999999999999999985 599999999874
No 182
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.00 E-value=0.014 Score=50.69 Aligned_cols=55 Identities=20% Similarity=0.373 Sum_probs=42.8
Q ss_pred HhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC-CCCchhhhhc
Q 043873 79 EMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP-AHSLSDSFAQ 134 (413)
Q Consensus 79 ~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp-~~sls~~lg~ 134 (413)
.++.+.+-+|-+ .|-.|+||||+|++|-..|-++|+-+..+|.|- ++.|..-++-
T Consensus 25 ~l~~qkGcviWi-TGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F 80 (207)
T KOG0635|consen 25 KLLKQKGCVIWI-TGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGF 80 (207)
T ss_pred HHhcCCCcEEEE-eccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCc
Confidence 355555554444 489999999999999999999999999999994 6666554443
No 183
>PRK09183 transposase/IS protein; Provisional
Probab=96.00 E-value=0.0071 Score=57.89 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=29.2
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++.|+.|+|||+++..++..+...|++|+++++
T Consensus 106 ~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 106 VLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 345999999999999999998899999998874
No 184
>PRK06749 replicative DNA helicase; Provisional
Probab=95.97 E-value=0.011 Score=60.61 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=46.5
Q ss_pred CCcccccchHHhhcCC-CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVAGT-QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~~-~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
....++..++.+..+- ..-++|+.+.+|+|||+++.|+|...|++|++|+++...-
T Consensus 168 Gi~TG~~~LD~~t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEM 224 (428)
T PRK06749 168 GIETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEM 224 (428)
T ss_pred CccCCcHHHHHHhCCCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeC
Confidence 3456778888877652 3457888899999999999999999999999999998874
No 185
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.97 E-value=0.014 Score=61.48 Aligned_cols=56 Identities=21% Similarity=0.437 Sum_probs=46.6
Q ss_pred CCcccccchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~Dp 124 (413)
....++++|++++.+ +...++++.|-+|+|||+++.+++...+++ |.+|+.|.++-
T Consensus 12 ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 12 KLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred cccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 345688999999964 334566677999999999999999988887 99999999984
No 186
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.95 E-value=0.0087 Score=53.98 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=28.6
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+++.|..|+|||.+|+.+|..+.+.|++|+.+++
T Consensus 50 l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 50 LILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred EEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 4445789999999999999999999999999986
No 187
>PRK06321 replicative DNA helicase; Provisional
Probab=95.94 E-value=0.012 Score=61.12 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=46.5
Q ss_pred CCcccccchHHhhcCC-CcEEEEEcCCCCccHHHHHHHHHHHHH-HcCCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVAGT-QRKHYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~~-~~~i~~~s~kgGvGKtT~a~~lA~~la-~~g~~vllvd~Dp 124 (413)
....++..|+.++.+- ..-++++.+.+|+|||+++.|+|..+| +.|++|+++.+.-
T Consensus 208 Gi~tG~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEM 265 (472)
T PRK06321 208 GIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEM 265 (472)
T ss_pred ccccCcHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 4456788999988753 335778889999999999999999998 4699999999874
No 188
>PRK09165 replicative DNA helicase; Provisional
Probab=95.90 E-value=0.012 Score=61.70 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=45.4
Q ss_pred CCcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHHc---------------CCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFANH---------------GHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~~---------------g~~vllvd~Dp 124 (413)
....++.+|+.++.+ ...-++++++.+|+||||++.|+|...|+. |++|+++.+.-
T Consensus 199 gi~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEM 270 (497)
T PRK09165 199 GISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEM 270 (497)
T ss_pred cccCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcC
Confidence 355788899998865 234577888999999999999999999864 78888888874
No 189
>PRK08006 replicative DNA helicase; Provisional
Probab=95.88 E-value=0.014 Score=60.69 Aligned_cols=56 Identities=18% Similarity=0.289 Sum_probs=46.1
Q ss_pred CCcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp 124 (413)
....++..|+.+..+ ...-++|+.+.+|+|||++|.|+|..+|. +|++|+++.+.-
T Consensus 206 Gi~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM 263 (471)
T PRK08006 206 GVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEM 263 (471)
T ss_pred cccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 345678888888765 23457788899999999999999999984 699999999884
No 190
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.84 E-value=0.009 Score=59.31 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=33.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHH-HcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la-~~g~~vllvd~D 123 (413)
+.++.|-+|+||||++..|+..|. ..|++|.++|.|
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~D 37 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYD 37 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccc
Confidence 357889999999999999999998 589999999999
No 191
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.83 E-value=0.013 Score=52.27 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=33.5
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++++.|-.|+||||++..++..+...+..+.++|.|.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 36677799999999999999999998888999998763
No 192
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.83 E-value=0.018 Score=50.90 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
+++.|+ |..|+||||++..|...+...|++|..|-.|..
T Consensus 2 ~vi~i~-G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 2 KVIGFV-GYSGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 455555 667999999999999999999999999987643
No 193
>PRK08840 replicative DNA helicase; Provisional
Probab=95.78 E-value=0.016 Score=60.17 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=46.3
Q ss_pred CCcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp 124 (413)
....++..++.++.+ ...-++|+.+.+|+|||+++.|+|...|. +|++|+++.+..
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEM 256 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEM 256 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 455678888888865 33457788899999999999999999984 699999999884
No 194
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.75 E-value=0.021 Score=51.37 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=34.5
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++.|.+|+||||++..|+..+...|..++++|.|.
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~ 56 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN 56 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH
Confidence 457777799999999999999999988888899999885
No 195
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.74 E-value=0.0089 Score=54.63 Aligned_cols=37 Identities=30% Similarity=0.320 Sum_probs=34.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++++|-+|+||||.|-+||..|.+.+.+|.-+..|-
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 6788899999999999999999999999999998874
No 196
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.74 E-value=0.016 Score=51.16 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=30.4
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.|.|+.|. |.||||.|..+|...+.+|+||++|-.
T Consensus 4 ~i~vy~g~-G~Gkt~~a~g~~~ra~~~g~~v~~vQF 38 (159)
T cd00561 4 LIQVYTGN-GKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46677666 999999999999999999999999654
No 197
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.74 E-value=0.015 Score=53.86 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=38.1
Q ss_pred ccchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 74 VAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 74 ~~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+..++.++.......+++.|+.|+|||+++..++..+-+.|.+++.++++
T Consensus 26 ~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 26 LAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred HHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 34455554333344555569999999999999999988889999999976
No 198
>PRK06904 replicative DNA helicase; Validated
Probab=95.73 E-value=0.017 Score=60.08 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=46.2
Q ss_pred CCcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp 124 (413)
....++..++.++.+ .+.-++|+++.+|+|||+++.|+|...|. .|++|+++.+..
T Consensus 203 Gi~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEM 260 (472)
T PRK06904 203 GVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEM 260 (472)
T ss_pred CccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 345678889988765 23457788899999999999999999985 699999999884
No 199
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.66 E-value=0.019 Score=60.41 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=45.7
Q ss_pred CcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 70 PRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
...++.++++++.++ ...++++.|.+|+|||+++.+++...++.|.+|++|+++-
T Consensus 255 ~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~ 311 (509)
T PRK09302 255 ISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE 311 (509)
T ss_pred ccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 456889999999753 2335555699999999999999999999999999999873
No 200
>PRK12377 putative replication protein; Provisional
Probab=95.66 E-value=0.015 Score=55.32 Aligned_cols=35 Identities=29% Similarity=0.611 Sum_probs=31.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
-+++.|..|+|||++|..+|..+.+.|++|+++..
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 45666999999999999999999999999988876
No 201
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.65 E-value=0.0093 Score=49.49 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=31.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+++.|.+|+||||++..+|..+...++.++.++++.
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 3445588999999999999999988877888888874
No 202
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=95.62 E-value=0.11 Score=49.86 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=33.9
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCCC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPS 356 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~ 356 (413)
+.+++|..+.......+.++++.+...++|+. +|+|++-...
T Consensus 89 D~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D~~~ 130 (268)
T cd04170 89 DAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMDRER 130 (268)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCccCC
Confidence 47888888887777788889999999998755 7999987653
No 203
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.59 E-value=0.02 Score=43.08 Aligned_cols=32 Identities=28% Similarity=0.528 Sum_probs=27.3
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+++.|..|+||||++..|+..| .|.++.++|.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 3456999999999999999999 6788888876
No 204
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.56 E-value=0.022 Score=55.94 Aligned_cols=55 Identities=25% Similarity=0.289 Sum_probs=41.9
Q ss_pred CcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHH------cCCCeeEEecCC
Q 043873 70 PRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFAN------HGHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~------~g~~vllvd~Dp 124 (413)
...+.+.++.++.++ ...+..+.|.+|+||||++.++|...+. .+.+|+.||+.-
T Consensus 77 ~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 77 ITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred ecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 334567888888753 3456666799999999999999988763 234999999973
No 205
>PF13479 AAA_24: AAA domain
Probab=95.56 E-value=0.041 Score=51.01 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=24.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
-+++-|.+|+||||++..+ .++++||+|..
T Consensus 5 ~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g 34 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL--------PKPLFIDTENG 34 (213)
T ss_pred EEEEECCCCCCHHHHHHhC--------CCeEEEEeCCC
Confidence 3444499999999998877 79999999854
No 206
>PRK04296 thymidine kinase; Provisional
Probab=95.55 E-value=0.021 Score=51.97 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=32.0
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.+.++.|..|+||||.+..++..++.+|++|+++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46778899999999999999999999999999993
No 207
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.47 E-value=0.025 Score=52.00 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=31.9
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
..++.++|.+|+||||++..|+..+ .+..+.+++.|..
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~ 43 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSY 43 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCcc
Confidence 4466677999999999999999988 5678999999863
No 208
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=95.41 E-value=0.021 Score=58.23 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
|+++.|++. .|+||||+...|...|.++|+||.+|=-
T Consensus 1 MkVi~IvG~-sgSGKTTLiekLI~~L~~rG~rVavIKH 37 (452)
T PRK14495 1 MRVYGIIGW-KDAGKTGLVERLVAAIAARGFSVSTVKH 37 (452)
T ss_pred CcEEEEEec-CCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 467777755 5999999999999999999999999643
No 209
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.41 E-value=0.4 Score=42.79 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=25.8
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.++.|..|+|||+.|.+++.. .|.+++.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at 32 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIAT 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEc
Confidence 466799999999999999865 6788988854
No 210
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.38 E-value=0.024 Score=53.42 Aligned_cols=51 Identities=12% Similarity=0.231 Sum_probs=39.5
Q ss_pred ccchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 74 VAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 74 ~~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+..++.+........+++.|..|+|||+++..++..+.+.|++|..+.+|.
T Consensus 33 ~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 33 LAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 344555544433335667799999999999999999999999999999874
No 211
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.37 E-value=0.031 Score=46.80 Aligned_cols=38 Identities=29% Similarity=0.468 Sum_probs=31.8
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
...+++.|.+|+||||++..++..+...+.++..++++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 34556679999999999999999998778888888775
No 212
>PRK05636 replicative DNA helicase; Provisional
Probab=95.34 E-value=0.024 Score=59.37 Aligned_cols=55 Identities=16% Similarity=0.344 Sum_probs=45.1
Q ss_pred CcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHH-HcCCCeeEEecCC
Q 043873 70 PRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la-~~g~~vllvd~Dp 124 (413)
...++..|+.+..+ ...-++++++.+|+|||+++.++|...| +.|++|+++.+.-
T Consensus 248 i~TG~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEM 304 (505)
T PRK05636 248 IPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEM 304 (505)
T ss_pred eecChHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeC
Confidence 45678888888765 3345778889999999999999999888 5689999998874
No 213
>PRK15453 phosphoribulokinase; Provisional
Probab=95.34 E-value=0.028 Score=54.22 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=35.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
.++.+.|-.|+||||++..++..|...|.++.+++.|--+.
T Consensus 6 piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 35555699999999999999999988888999999997654
No 214
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.33 E-value=0.029 Score=55.90 Aligned_cols=55 Identities=24% Similarity=0.169 Sum_probs=44.3
Q ss_pred CCcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHH----c--CCCeeEEecC
Q 043873 69 TPRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFAN----H--GHPTIVISTD 123 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~----~--g~~vllvd~D 123 (413)
....++.++|.++.++ ...|.-+.|.+|+|||+++.++|...+. . +.+|+.||+.
T Consensus 107 ~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE 169 (344)
T PLN03187 107 RITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE 169 (344)
T ss_pred eecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence 3557889999999863 4567777799999999999999987652 2 3699999996
No 215
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.33 E-value=0.029 Score=55.27 Aligned_cols=55 Identities=24% Similarity=0.262 Sum_probs=42.7
Q ss_pred CcccccchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHHc------CCCeeEEecCC
Q 043873 70 PRETVAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANH------GHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~------g~~vllvd~Dp 124 (413)
...++..+++++.+ ....+..+.|.+|+|||+++.++|...+.. +.+|+.||++-
T Consensus 84 ~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 84 ITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred cCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 34566888888875 344566667999999999999999887653 35899999974
No 216
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.32 E-value=0.023 Score=54.37 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=34.1
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
-++|-.|+||||++..++..|.+.|.+|.+|+.|.-+.
T Consensus 3 gItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 3 AVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 34689999999999999999999999999999997665
No 217
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.29 E-value=0.028 Score=50.38 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=30.3
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.|.++.| .|.||||.|..+|...+.+|+||+++=.
T Consensus 7 li~v~~g-~GkGKtt~a~g~a~ra~~~g~~v~ivQF 41 (173)
T TIGR00708 7 IIIVHTG-NGKGKTTAAFGMALRALGHGKKVGVIQF 41 (173)
T ss_pred EEEEECC-CCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3555545 9999999999999999999999999865
No 218
>PRK07004 replicative DNA helicase; Provisional
Probab=95.28 E-value=0.025 Score=58.74 Aligned_cols=56 Identities=21% Similarity=0.344 Sum_probs=45.4
Q ss_pred CcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCCC
Q 043873 70 PRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDPA 125 (413)
Q Consensus 70 ~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp~ 125 (413)
...++..|+.++.+ ...-++++++.+|+|||+++.++|...|. .|++|+++.+.-.
T Consensus 196 i~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~ 253 (460)
T PRK07004 196 TPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMP 253 (460)
T ss_pred ccCCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 44677888887764 23457788899999999999999999884 7999999998853
No 219
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.28 E-value=0.026 Score=55.62 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=43.7
Q ss_pred CcccccchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHH------cCCCeeEEecCC
Q 043873 70 PRETVAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFAN------HGHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~------~g~~vllvd~Dp 124 (413)
...++..+|.++.+ ....|.-+.|.+|+|||+++.++|..... .|.+|+.||+.-
T Consensus 78 isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 78 ITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred eCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 45678899999986 34567777799999999999999986542 356999999863
No 220
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.033 Score=55.92 Aligned_cols=56 Identities=20% Similarity=0.452 Sum_probs=47.6
Q ss_pred CCCcccccchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 68 STPRETVAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 68 ~~~~~~~~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.....++..++..+.+ -..-++..+|-+|.||||+-.+++..+|+++ |||.|...-
T Consensus 73 ~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE 130 (456)
T COG1066 73 PRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE 130 (456)
T ss_pred ccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCc
Confidence 3445678888888887 3456778889999999999999999999998 999999874
No 221
>PRK08727 hypothetical protein; Validated
Probab=95.24 E-value=0.024 Score=53.32 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=32.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++.|+.|+|||+++..++..+.++|++|..+.++
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 466779999999999999999999999999999864
No 222
>PRK08233 hypothetical protein; Provisional
Probab=95.24 E-value=0.017 Score=51.57 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=27.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
++.++|.+|+||||+|..|+..+. +.+++..|.+...
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~~ 41 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYDFD 41 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEEcc
Confidence 445556669999999999998874 3478888877543
No 223
>PRK05439 pantothenate kinase; Provisional
Probab=95.23 E-value=0.034 Score=54.56 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHc--CCCeeEEecCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANH--GHPTIVISTDPA 125 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~--g~~vllvd~Dp~ 125 (413)
...++-++|.+|+||||+|..|+..+.+. |.+|.+|.+|--
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 34566778999999999999999988763 789999999954
No 224
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.15 E-value=0.027 Score=53.02 Aligned_cols=36 Identities=28% Similarity=0.311 Sum_probs=29.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHH------------cCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFAN------------HGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~------------~g~~vllvd~D 123 (413)
+.++.|.||+||||++.++|.+.|. .+.+|++++++
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~E 50 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAE 50 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECC
Confidence 5677799999999999999999873 34567777765
No 225
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.09 E-value=0.041 Score=60.16 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=47.6
Q ss_pred CCcccccchHHhhc-C--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 69 TPRETVAGFDEMVA-G--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 69 ~~~~~~~~~~~~~~-~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
....++..|+.++. + ....+..+.|..|+||||++.+++...++.|.+|+.||+.-.
T Consensus 40 ~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t 99 (790)
T PRK09519 40 VIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHA 99 (790)
T ss_pred eecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccc
Confidence 44568899999997 4 235566677999999999999999999999999999999843
No 226
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.08 E-value=0.025 Score=54.54 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=28.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++++|-+|+||||.|..|+..+.+.+++|.+|+-|
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~ 38 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD 38 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 677889999999999999999999999999999965
No 227
>COG4240 Predicted kinase [General function prediction only]
Probab=95.08 E-value=0.036 Score=51.50 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=35.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcC-CCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHG-HPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g-~~vllvd~D 123 (413)
..-|+.+||..|+||||+|+.+-..|++.| ++|+-.+.|
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLD 88 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLD 88 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehh
Confidence 356888999999999999999999999998 799999988
No 228
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.04 E-value=0.025 Score=51.44 Aligned_cols=37 Identities=35% Similarity=0.503 Sum_probs=30.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCC----eeEEecCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHP----TIVISTDP 124 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~----vllvd~Dp 124 (413)
|+-++|.+|+||||+|..|+..|.+.|.. +.++..|-
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~ 41 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDD 41 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecc
Confidence 34567999999999999999999988877 66776664
No 229
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.96 E-value=0.026 Score=55.98 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=31.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
-+++.|..|+|||+++..+|..+.++|++|+.++++
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 345558999999999999999999999999999874
No 230
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.92 E-value=0.031 Score=50.90 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=29.3
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+.++|..|+||||++..|+..+ .+.++.++.+|.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~ 35 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDS 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence 4566999999999999999888 567899999995
No 231
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=94.92 E-value=0.046 Score=53.81 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCc
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSL 128 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sl 128 (413)
++++++| |.--+||||++.-|-....++|+|.+.+|.|++ +++
T Consensus 103 GPrv~vV--Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~si 146 (415)
T KOG2749|consen 103 GPRVMVV--GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSI 146 (415)
T ss_pred CCEEEEE--CCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCce
Confidence 3454444 777899999999999999999999999999994 443
No 232
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.90 E-value=0.035 Score=51.79 Aligned_cols=36 Identities=25% Similarity=0.282 Sum_probs=30.7
Q ss_pred EEcCCCCccHHHHHHHHHHHHHH--cCCCeeEEecCCC
Q 043873 90 MLGGKGGVGKTSCAASLAVKFAN--HGHPTIVISTDPA 125 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~--~g~~vllvd~Dp~ 125 (413)
-++|.+|+||||+|..|+..+.. .+.+|.+|..|-.
T Consensus 3 gI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 3 GIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred EeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 35599999999999999999876 5678999999954
No 233
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.87 E-value=0.03 Score=49.33 Aligned_cols=32 Identities=34% Similarity=0.408 Sum_probs=25.8
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..+++.|.+|+||||+|..||..+ | ..++|.|
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l---~--~~~~d~d 36 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL---G--YDFIDTD 36 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh---C--CCEEECh
Confidence 366677999999999999999987 4 4566776
No 234
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.86 E-value=0.048 Score=48.89 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=32.0
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++.+.|..|+||||+...+...|..+|+||..|-.+
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~ 43 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 3555568999999999999999999999999999764
No 235
>PRK06893 DNA replication initiation factor; Validated
Probab=94.86 E-value=0.044 Score=51.37 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=33.0
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..+++.|+.|+|||+++..+|..+.++|.+|..++++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 3556669999999999999999999999999999985
No 236
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.85 E-value=0.035 Score=54.47 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=31.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
-+++.|+.|+|||.++..+|..++++|++|.++.+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~ 192 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF 192 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH
Confidence 34555899999999999999999999999999876
No 237
>PTZ00035 Rad51 protein; Provisional
Probab=94.80 E-value=0.047 Score=54.35 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=43.2
Q ss_pred CcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHH------cCCCeeEEecCC
Q 043873 70 PRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFAN------HGHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~------~g~~vllvd~Dp 124 (413)
...++.++|.++.++ ...+..+.|..|+||||++.+++..... .+.+|+.||+..
T Consensus 100 isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 100 ITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred ccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 456889999999863 3456666799999999999999877642 456899999863
No 238
>PRK05642 DNA replication initiation factor; Validated
Probab=94.79 E-value=0.033 Score=52.42 Aligned_cols=36 Identities=25% Similarity=0.527 Sum_probs=32.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++..|+.|+|||.++..++..+.++|++|+.++++
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 456669999999999999999998899999999986
No 239
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.78 E-value=0.033 Score=49.06 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=29.1
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++.+|.+||||||++.-+|-.|.+.|++|.=+=+
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 3456999999999999999999999999865544
No 240
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.77 E-value=0.041 Score=50.33 Aligned_cols=47 Identities=23% Similarity=0.368 Sum_probs=34.4
Q ss_pred cchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 75 AGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 75 ~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
..++.++....+ +.++.|.+|+||||+...++..+...|++|+++-.
T Consensus 8 ~a~~~~l~~~~~-~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 8 EAVRAILTSGDR-VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp HHHHHHHHCTCS-EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred HHHHHHHhcCCe-EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 344445555444 56667999999999999999999999999988753
No 241
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.76 E-value=0.04 Score=51.30 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=33.5
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..+++.|+.|+|||+++..++..+.+.|.++..+++..
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 35567799999999999999999988999999999864
No 242
>PRK00089 era GTPase Era; Reviewed
Probab=94.72 E-value=1.8 Score=41.75 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=25.4
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLP 354 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~ 354 (413)
+.+++|.............+++.+...+.|+. +|+|++--
T Consensus 86 D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvi-lVlNKiDl 125 (292)
T PRK00089 86 DLVLFVVDADEKIGPGDEFILEKLKKVKTPVI-LVLNKIDL 125 (292)
T ss_pred CEEEEEEeCCCCCChhHHHHHHHHhhcCCCEE-EEEECCcC
Confidence 46677776655223445666777776666654 78899754
No 243
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.66 E-value=0.029 Score=51.61 Aligned_cols=35 Identities=31% Similarity=0.540 Sum_probs=26.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH--------HHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF--------ANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l--------a~~g~~vllvd~ 122 (413)
+.+++|.+|+||||+.+.++..+ ...+.+++++.-
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~ 61 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSP 61 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEES
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecC
Confidence 78889999999999999999988 456777777754
No 244
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.64 E-value=0.095 Score=51.64 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=40.5
Q ss_pred CcccccchHHhhc-C---CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 70 PRETVAGFDEMVA-G---TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~-~---~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
...++..++..+. + .++++-++ |..++||||++.++...+.+.|..+++||+..
T Consensus 34 i~TG~~~LD~aLg~GG~p~G~ivEi~-G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~ 91 (322)
T PF00154_consen 34 ISTGSPALDYALGIGGLPRGRIVEIY-GPESSGKTTLALHAIAEAQKQGGICAFIDAEH 91 (322)
T ss_dssp E--S-HHHHHHTSSSSEETTSEEEEE-ESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred EecCCcccchhhccCccccCceEEEe-CCCCCchhhhHHHHHHhhhcccceeEEecCcc
Confidence 4457788888876 3 25666676 56799999999999999888999999999863
No 245
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.57 E-value=0.033 Score=48.16 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=26.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
|++++|..|+||||+|..|+..+ ...++|.|.-
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~ 33 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDL 33 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCccc
Confidence 45677999999999999998864 3457788853
No 246
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=94.56 E-value=0.36 Score=45.91 Aligned_cols=43 Identities=28% Similarity=0.458 Sum_probs=33.4
Q ss_pred cEEEEEcC-CCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCc
Q 043873 86 RKHYMLGG-KGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSL 128 (413)
Q Consensus 86 ~~i~~~s~-kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sl 128 (413)
|-|.|++| -.|.||=.+|+.++.-|..+|++|.++-.||-=|+
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNv 45 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNV 45 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSS
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecccccc
Confidence 44666666 69999999999999999999999999999986543
No 247
>PF12846 AAA_10: AAA-like domain
Probab=94.52 E-value=0.06 Score=51.69 Aligned_cols=39 Identities=28% Similarity=0.479 Sum_probs=32.7
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchh
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSD 130 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~ 130 (413)
++.|+.|+||||+..++...+...|.+++++ |+.+....
T Consensus 5 ~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~--D~~g~~~~ 43 (304)
T PF12846_consen 5 LILGKTGSGKTTLLKNLLEQLIRRGPRVVIF--DPKGDYSP 43 (304)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCCEEEE--cCCchHHH
Confidence 3449999999999999999999999999999 45455444
No 248
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.50 E-value=0.081 Score=47.82 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=31.6
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.++++-|-.|+||||.+..|+..+...|++|.++-.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 467777999999999999999999999999877654
No 249
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.48 E-value=0.025 Score=48.28 Aligned_cols=32 Identities=38% Similarity=0.546 Sum_probs=25.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
++++.|.+|+||||++..++..+. ..+||.|-
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~ 32 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE 32 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence 456779999999999988875543 67788873
No 250
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.44 E-value=0.054 Score=48.73 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=30.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++++-|..|+||||++..|+..+...|++|..+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45666999999999999999999999999977654
No 251
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.41 E-value=0.18 Score=49.22 Aligned_cols=35 Identities=31% Similarity=0.355 Sum_probs=25.4
Q ss_pred chHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHH
Q 043873 76 GFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFAN 112 (413)
Q Consensus 76 ~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~ 112 (413)
-+++++... +.+++-|-||+||||++..|..+++.
T Consensus 81 lId~~fr~g--~~~~~~gdsg~GKttllL~l~Ialaa 115 (402)
T COG3598 81 LIDEFFRKG--YVSILYGDSGVGKTTLLLYLCIALAA 115 (402)
T ss_pred hhhHHhhcC--eeEEEecCCcccHhHHHHHHHHHHHh
Confidence 344444433 34455599999999999999999885
No 252
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.39 E-value=0.063 Score=53.49 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=43.1
Q ss_pred CCcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHH------cCCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFAN------HGHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~------~g~~vllvd~Dp 124 (413)
....++..+|.++.++ ...+..+.|.+|+|||+++.++|...+. .+.+|+.||+.-
T Consensus 104 ~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 104 QITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred eeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 3556888999988763 4456677799999999999999976552 124899999973
No 253
>PRK12740 elongation factor G; Reviewed
Probab=94.38 E-value=0.16 Score=55.39 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=30.8
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
+.+++|..+.......+...+..+...++|+. +|+|++-..
T Consensus 85 D~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~~ 125 (668)
T PRK12740 85 DGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDRA 125 (668)
T ss_pred CeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 46788887776666677778888888888755 688998654
No 254
>PRK06851 hypothetical protein; Provisional
Probab=94.33 E-value=0.081 Score=53.08 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=35.5
Q ss_pred CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 83 GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 83 ~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.....+.+++|.+|+||||+...++..+.++|++|.+.=+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 4556678888999999999999999999999999998865
No 255
>PRK08116 hypothetical protein; Validated
Probab=94.15 E-value=0.062 Score=51.70 Aligned_cols=35 Identities=34% Similarity=0.479 Sum_probs=31.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
-+++.|..|+|||.+|..+|..+.++|++|+++++
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 45666999999999999999999999999998874
No 256
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.14 E-value=0.04 Score=48.54 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=19.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++..||++|+||||+|.-||..+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 46778999999999999888765
No 257
>PRK06921 hypothetical protein; Provisional
Probab=94.13 E-value=0.059 Score=51.79 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=30.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~ 122 (413)
-+++.|+.|+|||+++..+|..+.++ |++|+.+.+
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 34555999999999999999999988 999988875
No 258
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.12 E-value=0.087 Score=49.30 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeE-EecCCCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIV-ISTDPAH 126 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vll-vd~Dp~~ 126 (413)
....++.+.|..|+||||++..|+..+...+..+.+ +..|..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 345677777999999999999999999988777766 8887543
No 259
>PF05729 NACHT: NACHT domain
Probab=94.12 E-value=0.05 Score=47.20 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=24.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGH 115 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~ 115 (413)
++++.|++|+||||++..++..++..+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCc
Confidence 5677799999999999999999998753
No 260
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.10 E-value=0.07 Score=47.24 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
++++.|+ |.-++||||+.-.+...|.++|+||.+|=-+.
T Consensus 2 ~~Il~iv-G~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIV-GYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CcEEEEE-ecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 3566666 77789999999999999999999999997654
No 261
>PF13173 AAA_14: AAA domain
Probab=94.08 E-value=0.069 Score=45.11 Aligned_cols=36 Identities=33% Similarity=0.398 Sum_probs=30.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++..|.-||||||++.+++..+. ...+++.+++|
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~ 38 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFD 38 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccC
Confidence 3566679999999999999998877 66789999988
No 262
>PRK07773 replicative DNA helicase; Validated
Probab=94.04 E-value=0.067 Score=60.09 Aligned_cols=56 Identities=18% Similarity=0.244 Sum_probs=45.3
Q ss_pred CCcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp 124 (413)
....++..|+.++.+ ...-++++++.+|+|||+++.|+|...|. .|++|+++.++-
T Consensus 199 Gi~TG~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEm 256 (886)
T PRK07773 199 GVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEM 256 (886)
T ss_pred CccCChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 345677888887754 23457778899999999999999999985 489999999884
No 263
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.92 E-value=0.09 Score=44.78 Aligned_cols=43 Identities=33% Similarity=0.444 Sum_probs=35.6
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcc
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQD 135 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~ 135 (413)
+.-|..|+|||+++..+|..+ +.++..+.+...-+..+++|.-
T Consensus 3 lL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~dl~g~~ 45 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEEDLIGSY 45 (139)
T ss_dssp EEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHHHHCEE
T ss_pred EEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccccccceeee
Confidence 445999999999999999998 8899999988777777777654
No 264
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.84 E-value=1 Score=50.14 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=29.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
+-.+++ ...|+||||.-...+..+|.+|+|+++|=
T Consensus 98 ~SFaii-APTGvGKTTfg~~~sl~~a~kgkr~yii~ 132 (1187)
T COG1110 98 KSFAII-APTGVGKTTFGLLMSLYLAKKGKRVYIIV 132 (1187)
T ss_pred CceEEE-cCCCCchhHHHHHHHHHHHhcCCeEEEEe
Confidence 334444 78899999999999999999999998874
No 265
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=93.79 E-value=0.087 Score=51.79 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=34.7
Q ss_pred CcEEEEEcCC-CCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGK-GGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~k-gGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..+|+|-|-- ||+|||.++..||..|.++|++|.+|.=.
T Consensus 28 vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 67 (311)
T TIGR00682 28 VPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRG 67 (311)
T ss_pred CCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCC
Confidence 3688887775 99999999999999999999999999854
No 266
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.78 E-value=0.1 Score=50.03 Aligned_cols=42 Identities=33% Similarity=0.464 Sum_probs=34.3
Q ss_pred EcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcc
Q 043873 91 LGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQD 135 (413)
Q Consensus 91 ~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~ 135 (413)
+.|..|+|||++|..+|.. .|.++..+.+++.-..++++|..
T Consensus 26 L~G~~GtGKT~lA~~la~~---lg~~~~~i~~~~~~~~~dllg~~ 67 (262)
T TIGR02640 26 LRGPAGTGKTTLAMHVARK---RDRPVMLINGDAELTTSDLVGSY 67 (262)
T ss_pred EEcCCCCCHHHHHHHHHHH---hCCCEEEEeCCccCCHHHHhhhh
Confidence 4599999999999999873 48999999998766666777653
No 267
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.78 E-value=0.12 Score=49.95 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=43.3
Q ss_pred CCcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 69 TPRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
....+...+++.+.++ ..+|.=+-|..|+||||+|.+++......|.++..||+-
T Consensus 41 ~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE 97 (279)
T COG0468 41 AISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTE 97 (279)
T ss_pred cccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCC
Confidence 3445667788888752 334444449999999999999999999999999999985
No 268
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.77 E-value=0.06 Score=52.31 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+.++++.|.+|+||||+|..|+..+. ....+|.|-
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~ 36 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDD 36 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccH
Confidence 45778889999999999999988762 567888874
No 269
>PRK06547 hypothetical protein; Provisional
Probab=93.76 E-value=0.089 Score=47.13 Aligned_cols=34 Identities=29% Similarity=0.478 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
...++.+.|..|+||||+|..|+..+ | +.++++|
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~---~--~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART---G--FQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh---C--CCeeccc
Confidence 34466666999999999999998763 3 4566666
No 270
>PRK08118 topology modulation protein; Reviewed
Probab=93.69 E-value=0.07 Score=47.50 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=18.3
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHH
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.|+|+ |.+|+||||+|..|+..+
T Consensus 3 rI~I~-G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILI-GSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh
Confidence 34444 899999999999988665
No 271
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=93.65 E-value=0.072 Score=48.68 Aligned_cols=39 Identities=28% Similarity=0.493 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++++.|-+|+||||++..+...+. +...+.||.|-
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~ 51 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADE 51 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHH
Confidence 3467889999999999999998877766 67889999994
No 272
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=93.61 E-value=0.091 Score=51.97 Aligned_cols=39 Identities=26% Similarity=0.216 Sum_probs=34.0
Q ss_pred cEEEEEcC-CCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGG-KGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~-kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+|+|-|- -||+|||+++..|+..|.++|++|.+|.=.-
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGY 89 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGY 89 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 57777665 6999999999999999999999999998653
No 273
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.54 E-value=0.063 Score=44.56 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.8
Q ss_pred EEEcCCCCccHHHHHHHHHHHH
Q 043873 89 YMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++++|..|+||||+|..|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 3677999999999999999988
No 274
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.51 E-value=0.041 Score=46.07 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHc-----CCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANH-----GHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~-----g~~vllvd~D 123 (413)
+.++++.|+.|+|||+++.+++..+... ..+|+.+++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCP 46 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeC
Confidence 3466777999999999999999999864 4566665553
No 275
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=93.46 E-value=0.11 Score=56.21 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
...++++.|.+|+||||+|..|+..|...|..+.++|.|-
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~ 498 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN 498 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh
Confidence 4567788899999999999999999998899999999995
No 276
>PRK10490 sensor protein KdpD; Provisional
Probab=93.38 E-value=1.7 Score=49.05 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeE
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIV 119 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vll 119 (413)
++-=++++.-+|||||+...+-|..+.++|..|++
T Consensus 23 g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~ 57 (895)
T PRK10490 23 GKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLV 57 (895)
T ss_pred CcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 45456777899999999999999999999999854
No 277
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.31 E-value=0.16 Score=49.49 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=33.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHc--CCCeeEEecCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANH--GHPTIVISTDPAH 126 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~--g~~vllvd~Dp~~ 126 (413)
..|+-+.|..|+||||++..|...+.+. +.+|.++..|...
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 4566677999999999999888888753 4589999999644
No 278
>PLN02796 D-glycerate 3-kinase
Probab=93.29 E-value=0.12 Score=51.42 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=33.6
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..|+.++|..|+||||++..|...+...|.++..|..|-
T Consensus 100 pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDd 138 (347)
T PLN02796 100 PLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDD 138 (347)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECC
Confidence 456677799999999999999999988888898888873
No 279
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.27 E-value=0.12 Score=47.55 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
..++.+.|.+|+||||++..|+..+.. ..+.++..|..
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 346667799999999999999887653 46777877753
No 280
>COG2403 Predicted GTPase [General function prediction only]
Probab=93.26 E-value=0.14 Score=50.71 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=39.5
Q ss_pred HHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 78 DEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 78 ~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
..++-....+|.|+.-.-|+|||+++..+|..|.++|+||++|-.
T Consensus 119 et~~~~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 119 ETMLKLEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred HHhhhhcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 344445667899999999999999999999999999999999987
No 281
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.14 E-value=0.095 Score=48.05 Aligned_cols=33 Identities=36% Similarity=0.428 Sum_probs=26.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++++|.+|+||||+|..||..+ |..+ ++..|
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~~~D 36 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR---AIDI-VLSGD 36 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCeE-EehhH
Confidence 477888999999999999998874 5544 67777
No 282
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=93.13 E-value=0.14 Score=52.16 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
...|+-++|..|+||||++..|...+...|.+|..|..|-
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD 250 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDD 250 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence 3467778899999999999999888877789999998884
No 283
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.13 E-value=0.15 Score=50.29 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=42.1
Q ss_pred CcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHH---cC---CCeeEEecCC
Q 043873 70 PRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFAN---HG---HPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~---~g---~~vllvd~Dp 124 (413)
...++..++.++.++ ...++.+.|.+|+||||++.+++...+. .| .+|+.||+..
T Consensus 78 ~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 78 LTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred eCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 456788999988763 3456677799999999999999975442 33 4899999874
No 284
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.11 E-value=0.12 Score=43.12 Aligned_cols=31 Identities=42% Similarity=0.584 Sum_probs=25.1
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.|..|+||||++..+|..+ |..++-+|+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l---~~~~~~i~~~ 32 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL---GFPFIEIDGS 32 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT---TSEEEEEETT
T ss_pred EEECcCCCCeeHHHHHHHhhc---cccccccccc
Confidence 456999999999999999987 5666666664
No 285
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.07 E-value=0.091 Score=47.78 Aligned_cols=32 Identities=28% Similarity=0.244 Sum_probs=26.0
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+.++|.+|+||||+|..|+..+ ..+.+|..|-
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~----~~~~~i~~Dd 33 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL----PNCCVIHQDD 33 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc----CCCeEEcccc
Confidence 4456999999999999998876 2478888883
No 286
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.06 E-value=0.14 Score=46.50 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=30.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
|.++ +..|.||||.|..+|...+.+|++|++|=.
T Consensus 25 v~v~-~g~GkGKtt~a~g~a~ra~g~G~~V~ivQF 58 (191)
T PRK05986 25 LIVH-TGNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (191)
T ss_pred EEEE-CCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4444 778999999999999999999999999976
No 287
>PRK06217 hypothetical protein; Validated
Probab=93.01 E-value=0.12 Score=46.58 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=24.4
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++.|-+|+||||+|..|+..+ |. -.+|+|-
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l---~~--~~~~~D~ 34 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERL---DI--PHLDTDD 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CC--cEEEcCc
Confidence 4455999999999999999766 44 4788883
No 288
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=93.00 E-value=0.19 Score=48.12 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=39.2
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCC--eeEEecCCCCCchhhh
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHP--TIVISTDPAHSLSDSF 132 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~--vllvd~Dp~~sls~~l 132 (413)
..+.|+-..|..||||||+|..|+..+++.+.. |-+|-+|-.+--..++
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L 130 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVL 130 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHh
Confidence 456677778999999999999999999998765 9999999654333333
No 289
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.92 E-value=0.12 Score=55.19 Aligned_cols=38 Identities=29% Similarity=0.510 Sum_probs=33.4
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp 124 (413)
.++++.|-.|+||||+|..||..|.. .|.++.++|.|.
T Consensus 393 ~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~ 431 (568)
T PRK05537 393 FTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDV 431 (568)
T ss_pred eEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcH
Confidence 35566799999999999999999987 788899999994
No 290
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=92.92 E-value=0.19 Score=49.02 Aligned_cols=37 Identities=35% Similarity=0.549 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
....+++++|..|+||||+|..||..| |.. .+|.+|.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l---~~~-~vi~~D~ 126 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL---GIR-SVIGTDS 126 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh---CCC-EEEechH
Confidence 344678888999999999999999877 555 3677884
No 291
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=92.91 E-value=1.6 Score=38.33 Aligned_cols=41 Identities=10% Similarity=0.103 Sum_probs=28.6
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
..+++|.........+..+.+..+...+.++ -+|+|++--.
T Consensus 87 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i-~iv~nK~D~~ 127 (189)
T cd00881 87 DGAILVVDANEGVQPQTREHLRIAREGGLPI-IVAINKIDRV 127 (189)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHCCCCe-EEEEECCCCc
Confidence 4678887776655556667777777766664 4889997543
No 292
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.85 E-value=0.097 Score=45.93 Aligned_cols=31 Identities=35% Similarity=0.534 Sum_probs=24.9
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
++.|..|+||||+|..|+..+ | ..++|.|.-
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l---~--~~~v~~D~~ 32 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL---G--AKFIEGDDL 32 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc---C--CeEEeCccc
Confidence 456999999999999999876 3 556788853
No 293
>COG1159 Era GTPase [General function prediction only]
Probab=92.80 E-value=5.5 Score=38.67 Aligned_cols=49 Identities=20% Similarity=0.174 Sum_probs=32.6
Q ss_pred HHHHhcCCCCceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 304 VRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 304 ~~~~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
+...+.|. +-+++|...+..--..-+..++.|+..+.|+. +++|++-..
T Consensus 79 a~~sl~dv--Dlilfvvd~~~~~~~~d~~il~~lk~~~~pvi-l~iNKID~~ 127 (298)
T COG1159 79 ARSALKDV--DLILFVVDADEGWGPGDEFILEQLKKTKTPVI-LVVNKIDKV 127 (298)
T ss_pred HHHHhccC--cEEEEEEeccccCCccHHHHHHHHhhcCCCeE-EEEEccccC
Confidence 34456664 46777777776444577778888888556654 778988643
No 294
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=92.76 E-value=0.13 Score=51.38 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=32.4
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHH--HHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKF--ANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~l--a~~g~~vllvd~D 123 (413)
|.++++.|.+|+|||.++.+++..+ ...+.+++++...
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n 40 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGN 40 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEec
Confidence 3578889999999999999999999 7778888777654
No 295
>PRK06761 hypothetical protein; Provisional
Probab=92.76 E-value=0.13 Score=49.87 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=31.8
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeE-EecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIV-ISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vll-vd~Dp 124 (413)
.++++.|.+|+||||++..++..+...|.+|-+ .+.|+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~ 42 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL 42 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence 467788999999999999999999888888765 55554
No 296
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=92.64 E-value=0.2 Score=46.65 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=31.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHH-HcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la-~~g~~vllvd~D 123 (413)
++|+ |+-|+|||+++..|...+. +.|.+++++|..
T Consensus 26 ~~I~-G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~ 61 (229)
T PF01935_consen 26 IAIF-GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPH 61 (229)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 5555 9999999999999999999 889999999874
No 297
>PRK13808 adenylate kinase; Provisional
Probab=92.60 E-value=2.1 Score=42.49 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=16.4
Q ss_pred cCCCCccHHHHHHHHHHHH
Q 043873 92 GGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 92 s~kgGvGKtT~a~~lA~~l 110 (413)
.|.+|+||||++..||..+
T Consensus 6 ~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 6 LGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4889999999999998754
No 298
>PRK07261 topology modulation protein; Provisional
Probab=92.59 E-value=0.15 Score=45.52 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=19.5
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 93 ~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
|.+|+||||+|..|+..+ |.. .++.|
T Consensus 7 G~~GsGKSTla~~l~~~~---~~~--~i~~D 32 (171)
T PRK07261 7 GYSGSGKSTLARKLSQHY---NCP--VLHLD 32 (171)
T ss_pred cCCCCCHHHHHHHHHHHh---CCC--eEecC
Confidence 899999999999987654 444 44555
No 299
>PTZ00301 uridine kinase; Provisional
Probab=92.50 E-value=0.23 Score=45.97 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=29.3
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHH-cCC-CeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFAN-HGH-PTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~-~g~-~vllvd~Dp 124 (413)
.|+-++|-+|+||||+|..|+..+.+ .|. .|.++-.|-
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~ 43 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDF 43 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence 45666799999999999999988854 343 466778874
No 300
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=92.50 E-value=9.1 Score=35.66 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=32.2
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLP 354 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~ 354 (413)
+.+++|...+.......++.++.+...|+|+ -+|+|++--
T Consensus 111 D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D~ 150 (224)
T cd04165 111 DYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKIDL 150 (224)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 4667777776666788899999999999995 588999864
No 301
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.44 E-value=9.1 Score=35.56 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=39.5
Q ss_pred cchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 75 AGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 75 ~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..++..+.+ +-..+++.-|-.|+|||-++..++..+-.+|++|..|.+-
T Consensus 15 delDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe 65 (235)
T COG2874 15 DELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTE 65 (235)
T ss_pred HHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEec
Confidence 344545544 2345777779999999999999999999999999999974
No 302
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=92.42 E-value=1.1 Score=46.11 Aligned_cols=42 Identities=26% Similarity=0.368 Sum_probs=35.4
Q ss_pred cEEEEEcC-CCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 86 RKHYMLGG-KGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 86 ~~i~~~s~-kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
+-|.|++| -.|.||-.+|+.||.-|..+|++|-++-.||--|
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlN 44 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLN 44 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEeccccee
Confidence 33555555 5899999999999999999999999999998544
No 303
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=92.39 E-value=0.16 Score=54.85 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=31.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
+.++.|.+|+||||+.+.+...+.++|++||++.
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a 208 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTA 208 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 5667799999999999999999999999999986
No 304
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.38 E-value=0.11 Score=49.64 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=41.6
Q ss_pred CcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHH------cCCCeeEEecCCCCC
Q 043873 70 PRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFAN------HGHPTIVISTDPAHS 127 (413)
Q Consensus 70 ~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~------~g~~vllvd~Dp~~s 127 (413)
...+...+|+++.++ ...|.=+.|.+|+|||.++.+||..... .+.+|+.||++-.-+
T Consensus 20 i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~ 85 (256)
T PF08423_consen 20 ISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFS 85 (256)
T ss_dssp E--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-
T ss_pred eCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCC
Confidence 456778999999763 2334444599999999999999987652 256899999985443
No 305
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=92.34 E-value=0.2 Score=49.75 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=33.6
Q ss_pred cEEEEEcC-CCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGG-KGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~-kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.||+|-|- -||+|||.++..||..|.++|++|.++.=.
T Consensus 57 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRG 95 (338)
T PRK01906 57 PVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRG 95 (338)
T ss_pred CEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecC
Confidence 57777665 699999999999999999999999999854
No 306
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.29 E-value=0.14 Score=45.63 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=24.4
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCee
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTI 118 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vl 118 (413)
++.+|+.|+||||+...+...+...|.+|.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~ 31 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVG 31 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccc
Confidence 466799999999999999999987776653
No 307
>PRK07933 thymidylate kinase; Validated
Probab=92.27 E-value=0.2 Score=46.38 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=31.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++++-|--|+||||.+..|+..|...|++|.++.-
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~ 36 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAF 36 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 56777999999999999999999999999998875
No 308
>PRK13946 shikimate kinase; Provisional
Probab=92.27 E-value=0.16 Score=45.80 Aligned_cols=31 Identities=32% Similarity=0.529 Sum_probs=25.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++.|-.|+||||++..||..| |.+ ++|+|
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~L---g~~--~id~D 42 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATML---GLP--FLDAD 42 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCC--eECcC
Confidence 45556999999999999999887 555 78888
No 309
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=92.23 E-value=0.28 Score=50.17 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=44.0
Q ss_pred CCCcccccchHHhhcCC-CcEEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEecC
Q 043873 68 STPRETVAGFDEMVAGT-QRKHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVISTD 123 (413)
Q Consensus 68 ~~~~~~~~~~~~~~~~~-~~~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~D 123 (413)
.....++..|+.+..+- ..-+++..+.+|.|||++|.|+|..+|.. .++|+++..-
T Consensus 177 ~Gi~tgf~~LD~~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLE 234 (435)
T COG0305 177 IGVPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLE 234 (435)
T ss_pred cccccCchhhHHHhcCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence 34456778888888762 34577888999999999999999999974 5568887765
No 310
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=92.10 E-value=1.8 Score=45.43 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=35.7
Q ss_pred cEEEEEcC-CCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 86 RKHYMLGG-KGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 86 ~~i~~~s~-kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
|-|.|++| -.|.||=.+|+.++..|..+|++|-.+=.||-=|
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN 44 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYIN 44 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccc
Confidence 44555555 6899999999999999999999999999998644
No 311
>PRK03839 putative kinase; Provisional
Probab=92.10 E-value=0.18 Score=45.15 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=23.1
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|-+|+||||++..||..+ | .-.+|+|
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~---~--~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL---G--YEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---C--CcEEehh
Confidence 4455999999999999988876 3 3457766
No 312
>PRK00698 tmk thymidylate kinase; Validated
Probab=91.98 E-value=0.27 Score=44.57 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=29.4
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.++++.|..|+||||++..|+..+...|+.|.+..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~ 38 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTR 38 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEee
Confidence 46677799999999999999999998887766543
No 313
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=91.97 E-value=0.16 Score=48.73 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcC-C-CeeEEecCCCCCc
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHG-H-PTIVISTDPAHSL 128 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g-~-~vllvd~Dp~~sl 128 (413)
....++.+.|-||+||||+|.+++......+ + .+.-++.....+.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~ 63 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSL 63 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCC
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccc
Confidence 4455667779999999999999997755332 2 4666676544443
No 314
>PRK05380 pyrG CTP synthetase; Validated
Probab=91.96 E-value=1.5 Score=45.98 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=35.8
Q ss_pred cEEEEEcC-CCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 86 RKHYMLGG-KGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 86 ~~i~~~s~-kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
|-|.|++| -.|.||=.+|+.++..|..+|++|-.+=.||-=|
T Consensus 3 k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlN 45 (533)
T PRK05380 3 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYIN 45 (533)
T ss_pred eEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccc
Confidence 44555555 6899999999999999999999999999998644
No 315
>PLN02327 CTP synthase
Probab=91.91 E-value=2.1 Score=45.09 Aligned_cols=42 Identities=29% Similarity=0.410 Sum_probs=35.6
Q ss_pred cEEEEEcC-CCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 86 RKHYMLGG-KGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 86 ~~i~~~s~-kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
|-|.|++| -.|.||=.+|+.++..|..+|++|-.+=.||-=|
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlN 44 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLN 44 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccc
Confidence 44555555 6899999999999999999999999999998644
No 316
>PRK06851 hypothetical protein; Provisional
Probab=91.90 E-value=0.37 Score=48.41 Aligned_cols=41 Identities=22% Similarity=0.425 Sum_probs=34.8
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEE--ecCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVI--STDP 124 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllv--d~Dp 124 (413)
....+.+.+|.+|+||||+...++..+.+.|+.|-.+ ..|+
T Consensus 28 ~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 28 GANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN 70 (367)
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 4566888899999999999999999999999997776 4444
No 317
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=91.87 E-value=1.7 Score=41.62 Aligned_cols=39 Identities=15% Similarity=0.023 Sum_probs=24.8
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLP 354 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~ 354 (413)
+.+++|..+......+ +.+.+.++..+.|+. +|+|++--
T Consensus 81 Dvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~i-lV~NK~Dl 119 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG-EFVLTKLQNLKRPVV-LTRNKLDN 119 (270)
T ss_pred CEEEEEEECCCCCchH-HHHHHHHHhcCCCEE-EEEECeeC
Confidence 4566676665433333 667777777777754 78898754
No 318
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=91.62 E-value=0.24 Score=49.08 Aligned_cols=39 Identities=23% Similarity=0.163 Sum_probs=34.1
Q ss_pred CcEEEEEcC-CCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGG-KGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~-kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..||+|-|- -||+|||-++..|+..|.++|++|.++.=-
T Consensus 35 vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRG 74 (326)
T PF02606_consen 35 VPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRG 74 (326)
T ss_pred CcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCC
Confidence 367777665 699999999999999999999999999854
No 319
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=91.46 E-value=0.28 Score=43.43 Aligned_cols=41 Identities=32% Similarity=0.475 Sum_probs=29.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
..++++.|..|+|||++...+...+.+.+.-++.++++..+
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~~ 64 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDSE 64 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeccc
Confidence 45777779999999999999999999876558888888763
No 320
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.38 E-value=0.16 Score=43.25 Aligned_cols=31 Identities=32% Similarity=0.441 Sum_probs=24.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
|++++|..|+||||+|..||..+ |. -++|.|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~---~~--~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL---GL--PYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CC--ceeccc
Confidence 35677999999999999998765 43 356666
No 321
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=91.27 E-value=0.46 Score=43.61 Aligned_cols=45 Identities=18% Similarity=0.082 Sum_probs=34.4
Q ss_pred hhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 80 MVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 80 ~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
.++.....++.+.|-.|+||||+-.+++..+. .+.+|.++..|+.
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~ 60 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVI 60 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCC
Confidence 34444455666779999999999999988764 4579999998864
No 322
>PLN02924 thymidylate kinase
Probab=91.24 E-value=0.36 Score=45.00 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
..++++-|-.|+||||.+..|+..|..+|++|.++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ 51 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWR 51 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeee
Confidence 457777899999999999999999999999986654
No 323
>PRK12338 hypothetical protein; Provisional
Probab=91.22 E-value=0.23 Score=48.91 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=26.5
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++++|.+|+||||+|..||..+ |.+ .+++.|
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l---~~~-~~~~tD 37 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTL---NIK-HLIETD 37 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCe-EEccCh
Confidence 577888999999999999998876 544 366777
No 324
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.13 E-value=0.24 Score=48.11 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=24.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGH 115 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~ 115 (413)
-+++.|.+|+||||+|..+|..+.+.|.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 3555699999999999999999998775
No 325
>PRK13947 shikimate kinase; Provisional
Probab=90.99 E-value=0.26 Score=43.46 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=24.5
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++.|-+|+||||++..||..| |.+ ++|.|.
T Consensus 4 I~l~G~~GsGKst~a~~La~~l---g~~--~id~d~ 34 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTL---SFG--FIDTDK 34 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCC--EEECch
Confidence 4555999999999999998876 555 577774
No 326
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=90.94 E-value=0.22 Score=44.35 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=25.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++++|-+|+||||+|..|+..+- ...+-++.|
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~---~~~~~~~~D 36 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLA---EPWLHFGVD 36 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC---CCccccCcc
Confidence 788889999999999999987652 333445666
No 327
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=90.77 E-value=0.39 Score=39.47 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=26.5
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHc--CCCeeEEe
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANH--GHPTIVIS 121 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~--g~~vllvd 121 (413)
+++.+..|+|||+++..++..+... ..+++++-
T Consensus 3 ~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 3 VLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred EEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 4566999999999999999999874 45666663
No 328
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=90.74 E-value=0.22 Score=40.73 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.0
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHc
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANH 113 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~ 113 (413)
.+.|.+|+|||+++..||..+.+.
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 355888999999999999999865
No 329
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.67 E-value=0.44 Score=43.56 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEe
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVIS 121 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd 121 (413)
+++++|..|+||||+...++..+... +.+++.++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e 37 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE 37 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc
Confidence 56777999999999999988888755 34555444
No 330
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=90.62 E-value=1.1 Score=41.30 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=25.8
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLP 354 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~ 354 (413)
+.+++|.........+.++.++.+...++++ -+|+|++--
T Consensus 96 D~~llVvD~~~~~~~~~~~~~~~~~~~~~p~-iiviNK~D~ 135 (213)
T cd04167 96 DGVVLVVDVVEGVTSNTERLIRHAILEGLPI-VLVINKIDR 135 (213)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 4667776654433345566667777777654 488999864
No 331
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.54 E-value=0.23 Score=48.64 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=40.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHH----cCCCeeEEecCCCCCchhhhhcc
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFAN----HGHPTIVISTDPAHSLSDSFAQD 135 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~----~g~~vllvd~Dp~~sls~~lg~~ 135 (413)
.+++..-|.+|+|||+++-.||..|+- +-++..+|+.....=.+.||+..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsES 230 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSES 230 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhh
Confidence 457777899999999999999999983 34678888887655577888654
No 332
>PRK13973 thymidylate kinase; Provisional
Probab=90.53 E-value=0.45 Score=43.98 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=30.9
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.++++=|-.|+||||.+..|+..|...|++|....
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46677899999999999999999999999987664
No 333
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=90.46 E-value=0.29 Score=50.63 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=31.1
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|..|+|||+++..+|..+.+.|.+|+.++++
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 34458999999999999999999999999999975
No 334
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=90.35 E-value=0.33 Score=45.92 Aligned_cols=35 Identities=43% Similarity=0.637 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
...|++.+|-+||||||+|.-+|..| |-+ -++.+|
T Consensus 88 ~p~IILIGGasGVGkStIA~ElA~rL---gI~-~visTD 122 (299)
T COG2074 88 RPLIILIGGASGVGKSTIAGELARRL---GIR-SVISTD 122 (299)
T ss_pred CCeEEEecCCCCCChhHHHHHHHHHc---CCc-eeecch
Confidence 35788999999999999999998766 443 456666
No 335
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=90.21 E-value=0.32 Score=43.40 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCee
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTI 118 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vl 118 (413)
+..+|-+||||||+|-.|+ +.|+++.
T Consensus 3 I~ITGTPGvGKTT~~~~L~----~lg~~~i 28 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR----ELGYKVI 28 (180)
T ss_pred EEEeCCCCCchHHHHHHHH----HhCCcee
Confidence 3445999999999998887 4566554
No 336
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=90.20 E-value=0.37 Score=44.70 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=30.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
+|+-.+|-+|+||||+|..|...|-.. ++.+|..|--
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~Y 45 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDY 45 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeecccc
Confidence 566677999999999999999888644 8999998853
No 337
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=90.20 E-value=9 Score=34.24 Aligned_cols=86 Identities=10% Similarity=0.061 Sum_probs=53.4
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPL 393 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~ 393 (413)
+.+++|..+..-....+++.+..+..+++| .-+++|++-.. ...+.+...+.+.+.+....... ....|++-+.-
T Consensus 95 D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~---~~~~~~~~~~~~~~l~~~~~~~~-~~~~~vi~~Sa 169 (188)
T PF00009_consen 95 DIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI---EKELEEIIEEIKEKLLKEYGENG-EEIVPVIPISA 169 (188)
T ss_dssp SEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS---HHHHHHHHHHHHHHHHHHTTSTT-TSTEEEEEEBT
T ss_pred ccceeeeecccccccccccccccccccccc-eEEeeeeccch---hhhHHHHHHHHHHHhccccccCc-cccceEEEEec
Confidence 478888888877788999999999999999 77899998543 22232333333334444443311 01356666654
Q ss_pred CCCCCCCHHHHHH
Q 043873 394 VDVEIRGVPALKF 406 (413)
Q Consensus 394 ~~~e~~g~~aL~~ 406 (413)
+.. .|++.|..
T Consensus 170 ~~g--~gi~~Ll~ 180 (188)
T PF00009_consen 170 LTG--DGIDELLE 180 (188)
T ss_dssp TTT--BTHHHHHH
T ss_pred CCC--CCHHHHHH
Confidence 444 47775544
No 338
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=90.20 E-value=0.37 Score=42.55 Aligned_cols=30 Identities=37% Similarity=0.536 Sum_probs=23.8
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|-.|+||||++..||..+ |. -++|.|
T Consensus 5 i~~~G~~GsGKst~~~~la~~l---g~--~~~d~D 34 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQAL---GY--RFVDTD 34 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CC--CEEEcc
Confidence 3445999999999999999876 44 467888
No 339
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=90.20 E-value=0.33 Score=44.80 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=25.6
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCC--CeeEE
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGH--PTIVI 120 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~--~vllv 120 (413)
.++++.|+.|+|||++|...|..+...|. |++++
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 37778899999999999999998887764 44443
No 340
>PRK04040 adenylate kinase; Provisional
Probab=90.18 E-value=0.3 Score=44.34 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.4
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHH
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la 111 (413)
.++++.|.+|+||||++..|+..+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 3566679999999999999998875
No 341
>PRK13948 shikimate kinase; Provisional
Probab=90.18 E-value=0.4 Score=43.34 Aligned_cols=32 Identities=28% Similarity=0.267 Sum_probs=25.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..+++.|-.|+||||++..||..+ |.+ +||+|
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~l---g~~--~iD~D 42 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRAL---MLH--FIDTD 42 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc---CCC--EEECC
Confidence 345566999999999999998876 544 56999
No 342
>CHL00181 cbbX CbbX; Provisional
Probab=90.17 E-value=0.33 Score=47.19 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.4
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGH 115 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~ 115 (413)
+++.|.+|+||||+|..+|..+...|.
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGY 88 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 556699999999999999999887665
No 343
>PRK13949 shikimate kinase; Provisional
Probab=90.15 E-value=0.36 Score=42.99 Aligned_cols=30 Identities=33% Similarity=0.532 Sum_probs=23.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
|+++ |-.|+||||++..||..+ | .-.+|+|
T Consensus 4 I~li-G~~GsGKstl~~~La~~l---~--~~~id~D 33 (169)
T PRK13949 4 IFLV-GYMGAGKTTLGKALAREL---G--LSFIDLD 33 (169)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHc---C--CCeeccc
Confidence 4443 999999999999999877 3 4577887
No 344
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=90.09 E-value=0.23 Score=44.35 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=22.5
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+++.|.+|+||||+|..||..+ | +..+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~---~--~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF---G--FTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---C--CeEEEC
Confidence 4556999999999999998865 3 455665
No 345
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=90.09 E-value=0.62 Score=47.02 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=32.3
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcC--CCeeEEecCCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHG--HPTIVISTDPAHS 127 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g--~~vllvd~Dp~~s 127 (413)
..+++.|.+|+|||+++..++..+.+.+ ..+..|++....+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3457789999999999999999998765 6777777764433
No 346
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=90.08 E-value=0.32 Score=49.54 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=31.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHc--CCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANH--GHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~--g~~vllvd~D 123 (413)
.+++.|+.|+|||+++..++..+.++ |.+|+.++++
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 45667999999999999999999876 7899999875
No 347
>PLN02348 phosphoribulokinase
Probab=89.96 E-value=0.56 Score=47.42 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcC---------------CCeeEEecCCCCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHG---------------HPTIVISTDPAHS 127 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g---------------~~vllvd~Dp~~s 127 (413)
...+|+-+.|-+|+||||+|..|+..|...+ ..+.+|-+|-.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~ 105 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS 105 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccC
Confidence 3456777789999999999999999997542 4688898886553
No 348
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=89.94 E-value=0.46 Score=47.81 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=33.5
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++|.|+ |..|+||||+...|...|.++|+||.+|--|.
T Consensus 205 ~~~~~~~-g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 205 PPLLGVV-GYSGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred ccEEEEe-cCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 4555554 78999999999999999999999999998764
No 349
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.84 E-value=0.43 Score=45.81 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=33.1
Q ss_pred chHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 76 GFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 76 ~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.+..++... +-+++++|..|+||||+...+...+...+.+++.|+
T Consensus 71 ~l~~~~~~~-~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiE 115 (264)
T cd01129 71 IFRKLLEKP-HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVE 115 (264)
T ss_pred HHHHHHhcC-CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC
Confidence 344444444 346777899999999999988888776667777775
No 350
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=89.75 E-value=0.34 Score=48.70 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=28.3
Q ss_pred cchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHH
Q 043873 75 AGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVK 109 (413)
Q Consensus 75 ~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~ 109 (413)
..++.+++.+.---+++-|.+|+||||+|..+|..
T Consensus 37 ~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 37 KPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred chHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHh
Confidence 45667777666666778899999999999999975
No 351
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=89.74 E-value=0.57 Score=45.49 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=34.1
Q ss_pred HhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 79 EMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 79 ~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
.++...+-.++-+.|.+|+||||+...+...+... +++.+|+.|..
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~ 142 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQ 142 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcC
Confidence 33444444455556899999999999999988655 58999988853
No 352
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=89.58 E-value=0.4 Score=41.23 Aligned_cols=29 Identities=38% Similarity=0.539 Sum_probs=23.1
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.|.+|+||||++..||..+ |.+ .+|.|
T Consensus 3 ~l~G~~GsGKstla~~la~~l---~~~--~~~~d 31 (154)
T cd00464 3 VLIGMMGAGKTTVGRLLAKAL---GLP--FVDLD 31 (154)
T ss_pred EEEcCCCCCHHHHHHHHHHHh---CCC--EEEch
Confidence 445999999999999998877 544 55776
No 353
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=89.55 E-value=0.51 Score=42.21 Aligned_cols=38 Identities=34% Similarity=0.542 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHH-HcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la-~~g~~vllvd~D 123 (413)
+..+++.|..|||||.+|..||..+- ....+.+.+|+-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s 41 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMS 41 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhh
Confidence 45667779999999999999999998 566688888875
No 354
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=89.35 E-value=0.52 Score=46.53 Aligned_cols=44 Identities=25% Similarity=0.418 Sum_probs=36.3
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcc
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQD 135 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~ 135 (413)
+++.|..|+||||++.++|..+ |.+..-|.+++.-+..+++|..
T Consensus 67 ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~~DliG~~ 110 (327)
T TIGR01650 67 VMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSRIDLVGKD 110 (327)
T ss_pred EEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCChhhcCCCc
Confidence 3445999999999999999877 6888889988887777788764
No 355
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=89.33 E-value=0.41 Score=47.00 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+.++++.|..|+|||++|..||..+ .+.+|.+|.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~-----~~~iis~Ds 37 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRL-----NGEIISADS 37 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhC-----CCcEEeccc
Confidence 3477788999999999999998865 356788884
No 356
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=89.27 E-value=0.37 Score=45.99 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=22.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHG 114 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g 114 (413)
-+++.|.+|+||||+|..+|..+.+.|
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 345569999999999999999987655
No 357
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=89.22 E-value=0.34 Score=43.26 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=29.8
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCeeEEecCC------CCCchhhhhcc
Q 043873 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDP------AHSLSDSFAQD 135 (413)
Q Consensus 93 ~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp------~~sls~~lg~~ 135 (413)
|--|+||||+...||..|. .-++|+|. ..+++++|...
T Consensus 9 G~mGaGKSTIGr~LAk~L~-----~~F~D~D~~Ie~~~g~sI~eIF~~~ 52 (172)
T COG0703 9 GFMGAGKSTIGRALAKALN-----LPFIDTDQEIEKRTGMSIAEIFEEE 52 (172)
T ss_pred cCCCCCHhHHHHHHHHHcC-----CCcccchHHHHHHHCcCHHHHHHHH
Confidence 8999999999999998774 34899992 35677777654
No 358
>PRK14528 adenylate kinase; Provisional
Probab=89.20 E-value=0.54 Score=42.50 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=18.1
Q ss_pred EEEcCCCCccHHHHHHHHHHHH
Q 043873 89 YMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~l 110 (413)
+++.|.+|+||||+|..||..+
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3446889999999999988765
No 359
>PLN02200 adenylate kinase family protein
Probab=89.20 E-value=0.4 Score=45.14 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
..++++.|.+|+||||+|..||..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3577778999999999999998765
No 360
>PLN03025 replication factor C subunit; Provisional
Probab=89.18 E-value=0.59 Score=46.02 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=30.8
Q ss_pred chHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 76 GFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 76 ~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.++.++......-+++.|..|+||||++..+|..+-..++...+++.
T Consensus 24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 34444444322235678999999999999999998655544334443
No 361
>PLN02165 adenylate isopentenyltransferase
Probab=89.12 E-value=0.83 Score=45.25 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=25.8
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++.|..|+||||+|..||..+. .-+|++|.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~-----~eIIsaDs 76 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFP-----SEIINSDK 76 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcC-----CceecCCh
Confidence 33556669999999999999887752 25788873
No 362
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=89.06 E-value=0.39 Score=48.98 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=31.2
Q ss_pred HHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 78 DEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 78 ~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.+.+.....-|++ .|.+|.||||.|.+||-.++.+|+=|--+.
T Consensus 256 ~eRL~eraeGILI-AG~PGaGKsTFaqAlAefy~~~GkiVKTmE 298 (604)
T COG1855 256 KERLEERAEGILI-AGAPGAGKSTFAQALAEFYASQGKIVKTME 298 (604)
T ss_pred HHHHHhhhcceEE-ecCCCCChhHHHHHHHHHHHhcCcEEeecc
Confidence 3334443444544 499999999999999999999998444443
No 363
>PRK00625 shikimate kinase; Provisional
Probab=89.03 E-value=0.43 Score=42.80 Aligned_cols=30 Identities=37% Similarity=0.354 Sum_probs=23.7
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|-.|+||||++..||..+ | .-.+|+|
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l---~--~~~id~D 32 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFL---S--LPFFDTD 32 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---C--CCEEEhh
Confidence 4455999999999999998876 4 4467877
No 364
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.79 E-value=0.45 Score=45.50 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.+..++++|..|+||||+..++...+-..+.+++.|+-
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd 163 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIED 163 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEES
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEecc
Confidence 35677788999999999999998877777788888884
No 365
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=88.76 E-value=3.6 Score=43.55 Aligned_cols=42 Identities=12% Similarity=0.061 Sum_probs=30.7
Q ss_pred CceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 313 ATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 313 ~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
.+.+++|..+...--..++++++.++..++| .-+|+|++--.
T Consensus 104 aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~ 145 (527)
T TIGR00503 104 VDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRD 145 (527)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECcccc
Confidence 3577888777665555678888888888887 45788998643
No 366
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=88.75 E-value=0.43 Score=42.99 Aligned_cols=17 Identities=47% Similarity=0.636 Sum_probs=15.9
Q ss_pred CCCCccHHHHHHHHHHH
Q 043873 93 GKGGVGKTSCAASLAVK 109 (413)
Q Consensus 93 ~kgGvGKtT~a~~lA~~ 109 (413)
|-+|+||||.|..||..
T Consensus 7 G~pGaGK~T~A~~La~~ 23 (178)
T COG0563 7 GPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999886
No 367
>PRK01184 hypothetical protein; Provisional
Probab=88.73 E-value=0.5 Score=42.31 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=20.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++++.|..|+||||++. + +.+.|..+ +|+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~---~~~~g~~~--i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-I---AREMGIPV--VVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-H---HHHcCCcE--EEh
Confidence 56667999999999864 3 34557654 554
No 368
>PRK15494 era GTPase Era; Provisional
Probab=88.72 E-value=4.3 Score=40.41 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=13.8
Q ss_pred EcCCCCccHHHHHHHHH
Q 043873 91 LGGKGGVGKTSCAASLA 107 (413)
Q Consensus 91 ~s~kgGvGKtT~a~~lA 107 (413)
+-|.+||||||+.-.|.
T Consensus 57 ivG~~nvGKSTLin~l~ 73 (339)
T PRK15494 57 IIGRPNSGKSTLLNRII 73 (339)
T ss_pred EEcCCCCCHHHHHHHHh
Confidence 33999999999987663
No 369
>PRK08356 hypothetical protein; Provisional
Probab=88.71 E-value=0.61 Score=42.37 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=21.0
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHP 116 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~ 116 (413)
.+++++|++|+||||+|-.|. +.|..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~----~~g~~ 31 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE----EKGFC 31 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH----HCCCc
Confidence 456778999999999998884 35766
No 370
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=88.70 E-value=0.56 Score=42.79 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=23.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.+.|..|+||||++..|+..+ |.. ++|+|
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~---g~~--~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQK---GIP--ILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh---CCe--EeeCc
Confidence 45566999999999998877532 654 46888
No 371
>PRK14532 adenylate kinase; Provisional
Probab=88.68 E-value=0.48 Score=42.54 Aligned_cols=29 Identities=31% Similarity=0.361 Sum_probs=21.9
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.|.+|+||||+|..||..+ | ...|+.|
T Consensus 4 ~~~G~pGsGKsT~a~~la~~~---g--~~~is~~ 32 (188)
T PRK14532 4 ILFGPPAAGKGTQAKRLVEER---G--MVQLSTG 32 (188)
T ss_pred EEECCCCCCHHHHHHHHHHHc---C--CeEEeCc
Confidence 445999999999999998644 4 4556664
No 372
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=88.67 E-value=0.55 Score=42.13 Aligned_cols=29 Identities=45% Similarity=0.517 Sum_probs=21.8
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.|.+|+||||+|..||..+ | +..+++|
T Consensus 3 ~i~G~pGsGKst~a~~La~~~---~--~~~i~~~ 31 (194)
T cd01428 3 LLLGPPGSGKGTQAERLAKKY---G--LPHISTG 31 (194)
T ss_pred EEECCCCCCHHHHHHHHHHHc---C--CeEEECc
Confidence 445889999999999998764 3 4456654
No 373
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=88.61 E-value=0.45 Score=49.22 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=31.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHc--CCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANH--GHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~--g~~vllvd~D 123 (413)
-+++.|+.|+|||+++..+|..+.++ |.+|+.+.++
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 35667999999999999999999887 7889999876
No 374
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=88.44 E-value=0.54 Score=45.96 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=28.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHc--CCCeeEEe
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANH--GHPTIVIS 121 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~--g~~vllvd 121 (413)
.++++|..|+||||+...|...+.+. +.|++.++
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE 169 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE 169 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC
Confidence 45677999999999999999888764 67888877
No 375
>PRK02496 adk adenylate kinase; Provisional
Probab=88.43 E-value=0.51 Score=42.30 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=17.7
Q ss_pred EEcCCCCccHHHHHHHHHHHH
Q 043873 90 MLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~l 110 (413)
++.|.+|+||||+|..||..+
T Consensus 5 ~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 5 IFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 335889999999999998766
No 376
>PRK14531 adenylate kinase; Provisional
Probab=88.36 E-value=0.49 Score=42.51 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=18.7
Q ss_pred EEEcCCCCccHHHHHHHHHHHH
Q 043873 89 YMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~l 110 (413)
+++.|.+|+||||++..||..+
T Consensus 5 i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 5 LLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4456999999999999998875
No 377
>PLN03126 Elongation factor Tu; Provisional
Probab=88.36 E-value=6.4 Score=41.13 Aligned_cols=41 Identities=7% Similarity=0.045 Sum_probs=32.4
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLP 354 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~ 354 (413)
+.+++|...+.-....+++.+..+..+|++..-+++|+.--
T Consensus 169 D~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 169 DGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 46777777676667788899999999998877788999864
No 378
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=88.29 E-value=0.66 Score=45.58 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=32.5
Q ss_pred cchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcC--CCeeEEec
Q 043873 75 AGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHG--HPTIVIST 122 (413)
Q Consensus 75 ~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g--~~vllvd~ 122 (413)
..+..++..+....+++.|..|+||||++..+|..+...+ .++..+++
T Consensus 25 ~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 25 ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 3444455444322356779999999999999999887543 35566664
No 379
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=88.20 E-value=0.53 Score=41.97 Aligned_cols=23 Identities=22% Similarity=0.370 Sum_probs=18.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++++.|.+|+||||++..|+..+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 44555889999999999998765
No 380
>PRK13975 thymidylate kinase; Provisional
Probab=88.19 E-value=0.53 Score=42.46 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=22.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHH
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la 111 (413)
.++++-|-.|+||||++..||..+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677789999999999999999884
No 381
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=88.03 E-value=0.38 Score=44.94 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=22.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
-+++.|.+|+||||+|.-+|..+ |.....+.+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg 83 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANEL---GVNFKITSG 83 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHC---T--EEEEEC
T ss_pred eEEEECCCccchhHHHHHHHhcc---CCCeEeccc
Confidence 46777999999999998888765 444444443
No 382
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=87.88 E-value=0.53 Score=48.61 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=30.2
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHc--CCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANH--GHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~--g~~vllvd~D 123 (413)
+++.|..|+|||+++..+|..+.+. +.+|+.++++
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 5566999999999999999999875 5789999875
No 383
>PRK14527 adenylate kinase; Provisional
Probab=87.86 E-value=0.55 Score=42.44 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=19.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++++.|.+|+||||.|..||..+
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 55566999999999999998766
No 384
>PRK09866 hypothetical protein; Provisional
Probab=87.85 E-value=11 Score=40.67 Aligned_cols=41 Identities=10% Similarity=-0.006 Sum_probs=25.4
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCC-CcceEEEecccC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECI-PVQRLIVNQVLP 354 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi-~v~gvVvN~v~~ 354 (413)
+.+++|+.....-..+-+.+.+.+++.+- ...-+|+|++--
T Consensus 260 DvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 260 SAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred CEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 46777777765323333567777777763 124478898875
No 385
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=87.76 E-value=0.92 Score=48.73 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|+ |..|+||||+...|...|.++|+||.+|-.|
T Consensus 10 ~~vi~iv-G~s~sGKTTlie~li~~L~~~G~rVavIKh~ 47 (597)
T PRK14491 10 IPLLGFC-AYSGTGKTTLLEQLIPELNQRGLRLAVIKHA 47 (597)
T ss_pred ccEEEEE-cCCCCCHHHHHHHHHHHHHhCCceEEEEEcC
Confidence 4556665 7799999999999999999999999999875
No 386
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=87.75 E-value=0.59 Score=46.04 Aligned_cols=41 Identities=24% Similarity=0.149 Sum_probs=35.6
Q ss_pred cEEEEEcC-CCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 86 RKHYMLGG-KGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 86 ~~i~~~s~-kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
.||+|-|- -||.|||-+...||..|.++|.++.+++=.-.+
T Consensus 48 PVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 48 PVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred CEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 57777665 699999999999999999999999999976544
No 387
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=87.75 E-value=0.57 Score=41.99 Aligned_cols=29 Identities=38% Similarity=0.378 Sum_probs=22.9
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+.+.|..|+||||++..|+. .|. .++|+|
T Consensus 2 i~itG~~gsGKst~~~~l~~----~g~--~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE----LGI--PVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH----CCC--CEEecC
Confidence 45669999999999988776 465 468888
No 388
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=87.58 E-value=1.1 Score=46.95 Aligned_cols=52 Identities=21% Similarity=0.193 Sum_probs=34.5
Q ss_pred CCcEEEEEcC---CCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccC
Q 043873 84 TQRKHYMLGG---KGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLS 137 (413)
Q Consensus 84 ~~~~i~~~s~---kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~ 137 (413)
..+.|+|++- +-|.||||++.-|+.+|.+.|+++.+.= +++|+.-.||....
T Consensus 53 ~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~~l--RePSlGP~fG~KGG 107 (557)
T PF01268_consen 53 DGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIAAL--REPSLGPVFGIKGG 107 (557)
T ss_dssp --EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEEEE------CHHHHCST-S
T ss_pred CCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEEEE--ecCCCCCccCcccc
Confidence 3466666553 6899999999999999999999976643 68999999998753
No 389
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=87.55 E-value=0.51 Score=41.98 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=20.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFAN 112 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~ 112 (413)
++++.|..|+||||++-.|+..+..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5566799999999999999887643
No 390
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=87.49 E-value=0.61 Score=46.63 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHH
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFAN 112 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~ 112 (413)
.+.++.+.|.+|+||||+|..||..+.+
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4577788899999999999999999976
No 391
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=87.42 E-value=0.68 Score=46.57 Aligned_cols=52 Identities=13% Similarity=0.307 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC------C-C-CCchhhhhcccC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD------P-A-HSLSDSFAQDLS 137 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D------p-~-~sls~~lg~~~~ 137 (413)
...++++|.||+|||++-..+...+...|++|+++-.= . . .+++.+|+....
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~ 81 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPIN 81 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCcccc
Confidence 34668889999999999999999888877777665422 1 2 256666665543
No 392
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=87.40 E-value=0.59 Score=42.67 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=24.1
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHc--CCCeeEEecCCC
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANH--GHPTIVISTDPA 125 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~--g~~vllvd~Dp~ 125 (413)
++.|..|+|||++..+++..++.+ ...|-++=.|+.
T Consensus 42 li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 42 LIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp EEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 334999999999999999999983 334444445554
No 393
>PTZ00088 adenylate kinase 1; Provisional
Probab=87.39 E-value=0.62 Score=43.76 Aligned_cols=28 Identities=36% Similarity=0.305 Sum_probs=21.2
Q ss_pred EcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 91 LGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 91 ~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+.|.+|+||||+|..||..+ | +..|++|
T Consensus 11 l~G~PGsGK~T~a~~La~~~---g--~~~is~g 38 (229)
T PTZ00088 11 LFGAPGVGKGTFAEILSKKE---N--LKHINMG 38 (229)
T ss_pred EECCCCCCHHHHHHHHHHHh---C--CcEEECC
Confidence 34889999999999988755 3 4556655
No 394
>PRK13695 putative NTPase; Provisional
Probab=87.36 E-value=0.9 Score=40.35 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=24.1
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCee
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTI 118 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vl 118 (413)
++.|.+|+||||+...++..+...|.++.
T Consensus 4 ~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 4 GITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 44489999999999999988877787754
No 395
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=87.31 E-value=0.52 Score=41.34 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=15.2
Q ss_pred EEcCCCCccHHHHHHHHHHH
Q 043873 90 MLGGKGGVGKTSCAASLAVK 109 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~ 109 (413)
+++|-.|+||||++..|+..
T Consensus 3 ~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 3 VITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEE--TTSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHc
Confidence 44588999999999999966
No 396
>PRK13764 ATPase; Provisional
Probab=87.27 E-value=0.71 Score=49.39 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=28.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.++++|..|+||||++.+|+..+...|+.|.-++
T Consensus 259 ~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiE 292 (602)
T PRK13764 259 GILIAGAPGAGKSTFAQALAEFYADMGKIVKTME 292 (602)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEEC
Confidence 3567799999999999999999998887776665
No 397
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=87.25 E-value=0.73 Score=41.09 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=23.9
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++-|..|+||||++..||..+ | .-++|+|.
T Consensus 7 I~liG~~GaGKStl~~~La~~l---~--~~~vd~D~ 37 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSDQ 37 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHHc---C--CcEEECCc
Confidence 3444999999999999999875 3 44678873
No 398
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=87.23 E-value=0.76 Score=41.81 Aligned_cols=31 Identities=35% Similarity=0.348 Sum_probs=24.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++.+.|.-|+||||++..|+. .| .-++|+|
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~----~g--~~~i~~D 33 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE----LG--APVIDAD 33 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----cC--CEEEEec
Confidence 3556669999999999987765 35 4678998
No 399
>PRK10536 hypothetical protein; Provisional
Probab=87.17 E-value=1.2 Score=42.42 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=31.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHH-HcCCCeeEEecCCCCCchhhhhc
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVISTDPAHSLSDSFAQ 134 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la-~~g~~vllvd~Dp~~sls~~lg~ 134 (413)
++++.|..|+|||++|..+|...- ...++.++| +.|.-+..+.+|-
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI-~RP~v~~ge~LGf 122 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV-TRPVLQADEDLGF 122 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE-eCCCCCchhhhCc
Confidence 777779999999999999999654 334554554 3444444454444
No 400
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=86.97 E-value=0.91 Score=41.74 Aligned_cols=30 Identities=40% Similarity=0.407 Sum_probs=21.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++-..|+.|+||||+|--+ ++.| +-+||+|
T Consensus 4 iIglTG~igsGKStva~~~----~~~G--~~vidaD 33 (201)
T COG0237 4 IIGLTGGIGSGKSTVAKIL----AELG--FPVIDAD 33 (201)
T ss_pred EEEEecCCCCCHHHHHHHH----HHcC--CeEEEcc
Confidence 4445599999999987554 4444 5678888
No 401
>PLN03127 Elongation factor Tu; Provisional
Probab=86.93 E-value=4.9 Score=41.67 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=32.4
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLP 354 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~ 354 (413)
+.+++|...+.--..++++.+..+...|++..-+++|++--
T Consensus 149 D~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 149 DGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred CEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 46777777766556778999999999998866678999864
No 402
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=86.90 E-value=0.91 Score=44.14 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=34.8
Q ss_pred ccchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 74 VAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 74 ~~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
...+..++.......+++.|..|+||||++..++..+...+.+..+++.+
T Consensus 26 ~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 26 VERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 34455555543322347789999999999999999987766655555554
No 403
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=86.86 E-value=0.98 Score=40.42 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=31.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
+.+++|==|+||||+-.++.. ....|.|+.+|-.|..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g 38 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFG 38 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTT
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccc
Confidence 567789999999999999998 6678999999998854
No 404
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=86.73 E-value=0.36 Score=42.03 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=25.9
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC---CCchhh
Q 043873 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDPA---HSLSDS 131 (413)
Q Consensus 93 ~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~---~sls~~ 131 (413)
|-.|+||||++..||..|. .-.||.|-- .|+.++
T Consensus 2 GVsG~GKStvg~~lA~~lg-----~~fidGDdlHp~aNi~KM 38 (161)
T COG3265 2 GVSGSGKSTVGSALAERLG-----AKFIDGDDLHPPANIEKM 38 (161)
T ss_pred CCCccCHHHHHHHHHHHcC-----CceecccccCCHHHHHHH
Confidence 5679999999999998774 568999953 355543
No 405
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=86.73 E-value=0.62 Score=42.11 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
..++|+||+.|+||||+...|-...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4588889999999999998775544
No 406
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=86.73 E-value=0.93 Score=42.22 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=29.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCC--eeEEe
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHP--TIVIS 121 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~--vllvd 121 (413)
++|++|-+-+||||-|..|+.+|.++|.| |.++|
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 67888999999999999999999999955 44444
No 407
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=86.56 E-value=1.3 Score=41.06 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=32.3
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
..++++=|--|+||||.+..|+..|.++|.+|++.--
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trE 39 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTRE 39 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3477788999999999999999999999998877654
No 408
>PRK13976 thymidylate kinase; Provisional
Probab=86.45 E-value=1 Score=41.65 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=27.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHc-C-CCeeEE
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANH-G-HPTIVI 120 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~-g-~~vllv 120 (413)
++++-|--|+||||.+..|+..|... | ++|.+.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~ 36 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT 36 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe
Confidence 56778999999999999999999986 6 576644
No 409
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=86.38 E-value=1.1 Score=45.12 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=30.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++-+.|..|+||||++..|...|..+ ++|.++..+
T Consensus 7 ~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~ 41 (369)
T PRK14490 7 EIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHG 41 (369)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeC
Confidence 44445889999999999999999999 999999854
No 410
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=86.29 E-value=0.72 Score=42.90 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=29.1
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHc--CCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANH--GHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~--g~~vllvd~D 123 (413)
++..|+.|+|||.+...++..+.+. +.+|+.++++
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence 4566999999999999999998864 7899999875
No 411
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=86.23 E-value=0.62 Score=42.32 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEcCCCCccHHHHHHHH-HHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASL-AVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~l-A~~la~~g~~vllvd~D 123 (413)
|.++.|++|+|||..|+.. ....-+.|.+|.. ..+
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~ 37 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIP 37 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---T
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccC
Confidence 6678899999999999998 6665567766654 544
No 412
>PRK04182 cytidylate kinase; Provisional
Probab=86.19 E-value=0.65 Score=41.01 Aligned_cols=30 Identities=37% Similarity=0.439 Sum_probs=23.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+++++|..|+||||++..||..+ |. -++|+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l---g~--~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL---GL--KHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CC--cEecH
Confidence 45667999999999999998775 44 35664
No 413
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.17 E-value=1.5 Score=43.64 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=28.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcC------CCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHG------HPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g------~~vllvd~Dp 124 (413)
..+++.|.+|+|||+++..++..+.+.. .+++.|++..
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 3567779999999999999999886532 3566677654
No 414
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=86.06 E-value=0.64 Score=40.58 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=15.6
Q ss_pred EcCCCCccHHHHHHHHHH
Q 043873 91 LGGKGGVGKTSCAASLAV 108 (413)
Q Consensus 91 ~s~kgGvGKtT~a~~lA~ 108 (413)
+.|-+|+||||++..+|-
T Consensus 12 vtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 12 VTGTPGTGKSTLAERLAE 29 (176)
T ss_pred EeCCCCCCchhHHHHHHH
Confidence 349999999999999984
No 415
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=85.78 E-value=1.1 Score=33.09 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=19.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la 111 (413)
+.++.|+.|+||||+--++-..|-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 567779999999999877666553
No 416
>PRK04195 replication factor C large subunit; Provisional
Probab=85.68 E-value=1.1 Score=46.72 Aligned_cols=35 Identities=40% Similarity=0.572 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
...+++.|.+|+||||++..+|..+ |+.++-+++.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el---~~~~ielnas 73 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY---GWEVIELNAS 73 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEccc
Confidence 4567778999999999999998765 6777777654
No 417
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=85.54 E-value=1.1 Score=41.33 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=24.3
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++...|.-|+||||++..|+.. .|.. ++|+|
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~---lg~~--vidaD 38 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEK---LNLN--VVCAD 38 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH---cCCe--EEecc
Confidence 45566699999999999887753 3655 68888
No 418
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=85.29 E-value=1.1 Score=40.29 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=28.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
|.|+.| .|-||||.|.-+|...+-+|+||++|-.
T Consensus 24 i~VYtG-dGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 24 VQVFTS-SQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred EEEEeC-CCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 444433 5779999999999999999999999976
No 419
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=85.18 E-value=4.6 Score=44.25 Aligned_cols=41 Identities=15% Similarity=0.026 Sum_probs=30.9
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
+.+++|.........++++.+..+++.++|+. +|+|++--.
T Consensus 100 D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~ 140 (689)
T TIGR00484 100 DGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDKT 140 (689)
T ss_pred CEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 46777777665555667788888999999875 889998644
No 420
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=85.16 E-value=0.88 Score=40.97 Aligned_cols=30 Identities=40% Similarity=0.437 Sum_probs=22.5
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+.+.|..|+||||++..|+... |. -++|+|
T Consensus 2 i~itG~~gsGKst~~~~l~~~~---~~--~~i~~D 31 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKY---HF--PVIDAD 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhc---CC--eEEeCC
Confidence 4566999999999998776532 24 468888
No 421
>PRK07429 phosphoribulokinase; Provisional
Probab=85.13 E-value=0.99 Score=44.73 Aligned_cols=39 Identities=31% Similarity=0.344 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
.+++-+.|..|+||||++..|+..+-.. .+.++..|-.+
T Consensus 8 ~~IIgI~G~SGSGKSTla~~L~~ll~~~--~~~vi~~Dd~~ 46 (327)
T PRK07429 8 PVLLGVAGDSGCGKTTFLRGLADLLGEE--LVTVICTDDYH 46 (327)
T ss_pred CEEEEEECCCCCCHHHHHHHHHhHhccC--ceEEEEecccc
Confidence 4566667999999999999999777544 34555666433
No 422
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=85.08 E-value=1.1 Score=50.13 Aligned_cols=44 Identities=18% Similarity=0.384 Sum_probs=36.2
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhh
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFA 133 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg 133 (413)
++.|+.|+||||+...++..+...|.+|.++|.+.. ..+...++
T Consensus 442 ~I~G~sGsGKS~l~~~l~~~~~~~g~~vviiD~g~sy~~l~~~l~ 486 (829)
T TIGR03783 442 FILGPSGSGKSFFTNHLVRQYYEQGTHILLVDTGNSYQGLCELIH 486 (829)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCEEEEECCCccHHHHHHHhh
Confidence 444999999999999999999999999999998753 34666663
No 423
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.02 E-value=1.4 Score=49.45 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=38.8
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC---CCCchhhhhcc
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP---AHSLSDSFAQD 135 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp---~~sls~~lg~~ 135 (413)
..+++.|..|||||++|..||..+-..+.+++.+|+.. .++.+.++|..
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~ 647 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAP 647 (852)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCC
Confidence 34566799999999999999999988888999999874 34556665543
No 424
>PRK13342 recombination factor protein RarA; Reviewed
Probab=84.99 E-value=0.99 Score=46.19 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=24.6
Q ss_pred hHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 77 FDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 77 ~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++.++.....--+++.|.+|+||||+|..+|..+
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 5555555433345557999999999999998754
No 425
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=84.98 E-value=0.91 Score=40.07 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=23.5
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 93 ~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
|-.|+||||++..|+..+ | ...+|.|..+
T Consensus 2 G~sGsGKSTla~~la~~l---~--~~~~~~d~~~ 30 (163)
T PRK11545 2 GVSGSGKSAVASEVAHQL---H--AAFLDGDFLH 30 (163)
T ss_pred CCCCCcHHHHHHHHHHHh---C--CeEEeCccCC
Confidence 678999999999998887 3 4678888643
No 426
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=84.98 E-value=0.7 Score=43.87 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la 111 (413)
++++.|.+|+||||++..++..+.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 556679999999999999977665
No 427
>PRK14530 adenylate kinase; Provisional
Probab=84.95 E-value=0.89 Score=41.93 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=17.9
Q ss_pred EEcCCCCccHHHHHHHHHHHH
Q 043873 90 MLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~l 110 (413)
++-|.+|+||||++..||..+
T Consensus 7 ~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 7 LLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 334999999999999998776
No 428
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=84.93 E-value=0.75 Score=42.26 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=16.6
Q ss_pred EcCCCCccHHHHHHHHHHHH
Q 043873 91 LGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 91 ~s~kgGvGKtT~a~~lA~~l 110 (413)
+.|.+|+||||+|..||..+
T Consensus 4 i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 4 LLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EECCCCCCHHHHHHHHHHHc
Confidence 34889999999999988644
No 429
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=84.86 E-value=1.1 Score=49.49 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=30.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
+.++.|.+|+||||+...+...+.+.|++|.++-
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~A 403 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAA 403 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 6778899999999999999888888899999883
No 430
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=84.84 E-value=0.62 Score=44.94 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=24.8
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+.|..|+||||++..|+..+...| +.++.+|.
T Consensus 3 gI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd 35 (273)
T cd02026 3 GVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDD 35 (273)
T ss_pred EEECCCCCCHHHHHHHHHHhhCCCc--eEEEECcc
Confidence 4459999999999999998775544 44566663
No 431
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=84.79 E-value=0.95 Score=42.50 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=29.7
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+..--++++|.+|+||||....||..|--..+|=.+++..
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 3333567789999999999999999887554665555543
No 432
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=84.74 E-value=0.91 Score=39.38 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=22.7
Q ss_pred EEEEecCccc-hHHHHHHHHHHHHhcCCCcceEEEecccC
Q 043873 316 FVIVTIPTVM-AISESSRLHASLRKECIPVQRLIVNQVLP 354 (413)
Q Consensus 316 ~vlVt~pe~~-~~~ea~r~~~~l~~~gi~v~gvVvN~v~~ 354 (413)
+=+||--+.. +-.+.+++.+.|+..|+.-. +.+|-+..
T Consensus 93 IGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i-f~vS~~~~ 131 (143)
T PF10662_consen 93 IGVITKIDLPSDDANIERAKKWLKNAGVKEI-FEVSAVTG 131 (143)
T ss_pred EEEEECccCccchhhHHHHHHHHHHcCCCCe-EEEECCCC
Confidence 3444444443 36677788888888887643 55554443
No 433
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=84.72 E-value=1.1 Score=46.41 Aligned_cols=36 Identities=42% Similarity=0.692 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
...+++++|-+|+||||+|..||..+ |. +.+|.+|.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~l---g~-~~ii~tD~ 289 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRL---GI-TRIVSTDA 289 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc---CC-cEEeehhH
Confidence 35677888999999999999988765 33 33777774
No 434
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=84.71 E-value=0.78 Score=46.72 Aligned_cols=49 Identities=14% Similarity=0.285 Sum_probs=38.5
Q ss_pred cccchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 73 TVAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 73 ~~~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+..++.|+......++|+.|.-|+||+.+...=+ |.. ..+||+||||+
T Consensus 4 ~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~--L~~-r~~vL~IDC~~ 52 (431)
T PF10443_consen 4 AIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHV--LKD-RKNVLVIDCDQ 52 (431)
T ss_pred HHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHH--HhC-CCCEEEEEChH
Confidence 45678889998888899999999999998774432 233 35699999995
No 435
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=84.63 E-value=0.81 Score=40.06 Aligned_cols=31 Identities=35% Similarity=0.431 Sum_probs=24.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++++|-.|+||||+|..||..+ |.. ++|.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l---g~~--~~~~~ 32 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL---SLK--LISAG 32 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCc--eecHH
Confidence 56777999999999999998764 544 56654
No 436
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=84.55 E-value=1.1 Score=39.92 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=23.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++++.|..|+||||.|..++..+ |.+++.+.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat 34 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIAT 34 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CCCcEeCcC
Confidence 45666999999999999987653 455555443
No 437
>PRK00279 adk adenylate kinase; Reviewed
Probab=84.55 E-value=0.86 Score=42.03 Aligned_cols=28 Identities=43% Similarity=0.500 Sum_probs=20.6
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++.|.+|+||||+|..||..+ | +..+++
T Consensus 4 ~v~G~pGsGKsT~a~~la~~~---~--~~~is~ 31 (215)
T PRK00279 4 ILLGPPGAGKGTQAKFIAEKY---G--IPHIST 31 (215)
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--CcEEEC
Confidence 345889999999999887654 3 455554
No 438
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=84.49 E-value=1.5 Score=42.59 Aligned_cols=32 Identities=31% Similarity=0.383 Sum_probs=24.0
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|.+|+|||+++..+|..+ +.++..++..
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~ 64 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEM---GVNLKITSGP 64 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEeccc
Confidence 5567999999999999998766 3455555544
No 439
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=84.28 E-value=0.95 Score=40.53 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=25.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
|.|+.| .|-||||-|.-+|...+-+|.||+++-.
T Consensus 6 i~vytG-~GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T PF02572_consen 6 IQVYTG-DGKGKTTAALGLALRAAGHGMRVLIVQF 39 (172)
T ss_dssp EEEEES-SSS-HHHHHHHHHHHHHCTT--EEEEES
T ss_pred EEEEeC-CCCCchHHHHHHHHHHHhCCCEEEEEEE
Confidence 444444 4679999999999999999999999986
No 440
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=84.25 E-value=1.4 Score=40.40 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=23.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.+.|..|+||||++..|+. .|. .++|+|
T Consensus 3 ~igitG~igsGKst~~~~l~~----~g~--~vid~D 32 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSS----EGF--LIVDAD 32 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH----CCC--eEEeCc
Confidence 455669999999999998873 465 568998
No 441
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=84.08 E-value=0.87 Score=40.42 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=18.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++++.|+.|+||||++..|+..+
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 55666999999999988887754
No 442
>PLN02422 dephospho-CoA kinase
Probab=84.07 E-value=1.3 Score=41.71 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=23.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.+.|.-|+||||++..|+ +.|.. ++|+|
T Consensus 3 ~igltG~igsGKstv~~~l~----~~g~~--~idaD 32 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK----SSGIP--VVDAD 32 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH----HCCCe--EEehh
Confidence 45667999999999998887 34654 68998
No 443
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=83.90 E-value=2 Score=41.33 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=26.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcC----CCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHG----HPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g----~~vllvd~D 123 (413)
+.|. +-.|+||||+.+.....+...+ .++|++..-
T Consensus 16 ~lV~-a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft 54 (315)
T PF00580_consen 16 LLVN-AGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFT 54 (315)
T ss_dssp EEEE-E-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESS
T ss_pred EEEE-eCCCCCchHHHHHHHHHhhccccCChHHheecccC
Confidence 4444 5599999999999888887765 578888864
No 444
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=83.69 E-value=1.2 Score=39.37 Aligned_cols=35 Identities=31% Similarity=0.535 Sum_probs=25.0
Q ss_pred ccccchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHH
Q 043873 72 ETVAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVK 109 (413)
Q Consensus 72 ~~~~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~ 109 (413)
+++..+++.+.+ + +.++.|..||||||+.-.|.-.
T Consensus 24 ~g~~~l~~~l~~--k-~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG--K-TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT--S-EEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC--C-EEEEECCCCCCHHHHHHHHHhh
Confidence 455666666666 4 5555699999999998776553
No 445
>PRK10865 protein disaggregation chaperone; Provisional
Probab=83.69 E-value=1.2 Score=50.00 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=29.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHH-------cCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFAN-------HGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~-------~g~~vllvd~D 123 (413)
..++-|.+|||||+++..||..+.+ +|++++.+|+.
T Consensus 201 n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~ 243 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 243 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehh
Confidence 4445599999999999999999874 47888888876
No 446
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=83.67 E-value=1.2 Score=44.54 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=27.7
Q ss_pred chHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHc
Q 043873 76 GFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANH 113 (413)
Q Consensus 76 ~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~ 113 (413)
-++.+++++.---+|+.|.+|+||||+|..+|..-...
T Consensus 152 llrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~ 189 (554)
T KOG2028|consen 152 LLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH 189 (554)
T ss_pred HHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC
Confidence 34556665544466778999999999999998764433
No 447
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=83.64 E-value=2.5 Score=38.50 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=33.9
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
..+-+.|..|+|||++--.+-..|... +++.+|..|..-
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t 52 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYT 52 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeec
Confidence 455567999999999999999999888 999999999754
No 448
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=83.59 E-value=1.7 Score=43.47 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=33.7
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
++.+.+.+.-.|+|||+++.+|+..+-++|.+|.++-
T Consensus 2 ~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~k 38 (354)
T COG0857 2 SRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFK 38 (354)
T ss_pred cceEEEeccCCCccHHHHHHHHHHHHHHcCceeEEEe
Confidence 4678888999999999999999999999999998864
No 449
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=83.43 E-value=1.2 Score=40.69 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=33.2
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHc--C-CCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANH--G-HPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~--g-~~vllvd~D 123 (413)
..++.+||..|+||||++.+|-..+.+. + +++.-++.|
T Consensus 31 Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvD 71 (282)
T KOG2878|consen 31 PLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVD 71 (282)
T ss_pred cEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEec
Confidence 5688999999999999999999999875 3 478888887
No 450
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=83.37 E-value=1.2 Score=47.71 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=31.0
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHH--cCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFAN--HGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~--~g~~vllvd~D 123 (413)
+++.|+.|+|||.++..++..+.+ .|++|+.+.++
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae 353 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSE 353 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 566799999999999999999876 48999999985
No 451
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=83.36 E-value=1.1 Score=43.94 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=25.0
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..+++.|..|+||||++..||..+ |.+++ |+|
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~L---g~~~i--d~D 165 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARL---GVPFV--ELN 165 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc---CCCEE--eHH
Confidence 355556999999999999988766 66654 777
No 452
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=83.33 E-value=1 Score=40.48 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=18.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVK 109 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~ 109 (413)
++++.|..|+||||+...|+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5667799999999999988654
No 453
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=83.31 E-value=2 Score=42.82 Aligned_cols=44 Identities=23% Similarity=0.303 Sum_probs=30.2
Q ss_pred chHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEE
Q 043873 76 GFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVI 120 (413)
Q Consensus 76 ~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllv 120 (413)
.+..++... +-+++++|..|+||||+...+...+... +.+++.+
T Consensus 113 ~l~~~~~~~-~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti 157 (343)
T TIGR01420 113 VLRELAERP-RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI 157 (343)
T ss_pred HHHHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE
Confidence 344444444 3467777999999999999988877654 3455544
No 454
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=83.23 E-value=1.4 Score=41.79 Aligned_cols=31 Identities=29% Similarity=0.275 Sum_probs=22.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++...|.-|+||||++.-|... .|. -+||+|
T Consensus 3 iIGlTGgIgSGKStVs~~L~~~---~G~--~viDaD 33 (244)
T PTZ00451 3 LIGLTGGIACGKSTVSRILREE---HHI--EVIDAD 33 (244)
T ss_pred EEEEECCCCCCHHHHHHHHHHH---cCC--eEEehH
Confidence 4555699999999998776542 265 459999
No 455
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=83.20 E-value=0.85 Score=39.93 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.0
Q ss_pred CCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 95 GGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 95 gGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.|+||||++..||..|. .-++|+|.
T Consensus 1 ~GsGKStvg~~lA~~L~-----~~fiD~D~ 25 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG-----RPFIDLDD 25 (158)
T ss_dssp TTSSHHHHHHHHHHHHT-----SEEEEHHH
T ss_pred CCCcHHHHHHHHHHHhC-----CCccccCH
Confidence 49999999999999873 56899983
No 456
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=83.14 E-value=1.7 Score=46.83 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=34.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
.+.+++ |..|+|||++..+|+....+.|..|+++|-+-..
T Consensus 181 gHtlV~--GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkgD~ 220 (643)
T TIGR03754 181 GHTLVL--GTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDA 220 (643)
T ss_pred CceEEE--CCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 455555 9999999999999999999999999999977543
No 457
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.12 E-value=3.8 Score=45.11 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=39.0
Q ss_pred hhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 80 MVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 80 ~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
+......++++++...|.||||++++++. .+..|..|.=+.+|-..|
T Consensus 31 L~~~~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dn 77 (894)
T COG2909 31 LRRANDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDN 77 (894)
T ss_pred HhcCCCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccC
Confidence 33445778999999999999999999999 888888999888885443
No 458
>PRK14738 gmk guanylate kinase; Provisional
Probab=83.11 E-value=1.2 Score=40.82 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=18.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLA 107 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA 107 (413)
..++++.|..|+||||++..|.
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHH
Confidence 4577778999999999887764
No 459
>PLN02318 phosphoribulokinase/uridine kinase
Probab=83.10 E-value=1.5 Score=46.74 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
...+++.+.|..|+||||++..|+..+ ..+.+|..|-.+
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL----p~vgvIsmDdy~ 101 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVISMDNYN 101 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC----CCcEEEEEccee
Confidence 345777888999999999999998765 257788888543
No 460
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=83.07 E-value=1.1 Score=42.09 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=25.3
Q ss_pred CCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 95 GGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 95 gGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
|+.||||+-..||..+..+|+||++-.+
T Consensus 6 G~gGKTtl~~~l~~~~~~~g~~v~~TTT 33 (232)
T TIGR03172 6 GAGGKTSTMFWLAAEYRKEGYRVLVTTT 33 (232)
T ss_pred cCCcHHHHHHHHHHHHHHCCCeEEEECC
Confidence 3489999999999999999999998765
No 461
>PLN02840 tRNA dimethylallyltransferase
Probab=83.07 E-value=1.4 Score=45.10 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=26.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++.|..|+||||+|..||..+. . -+|.+|.
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~---~--~iis~Ds 54 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLN---G--EIISADS 54 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCC---C--CeEeccc
Confidence 44677789999999999999988762 2 3566663
No 462
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=83.03 E-value=1.5 Score=38.55 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=29.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchh
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSD 130 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~ 130 (413)
++++-|-.|+||||++..|+..|. .=.+|+|--|+...
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l~-----~~F~dgDd~Hp~~N 51 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEELG-----LKFIDGDDLHPPAN 51 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHhC-----CcccccccCCCHHH
Confidence 444459999999999999988774 45889997776554
No 463
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=82.92 E-value=1.7 Score=40.02 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=23.6
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++.+.|..|+||||++..|+. .|. -++|+|
T Consensus 6 ~~igitG~igsGKSt~~~~l~~----~g~--~v~d~D 36 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE----MGC--ELFEAD 36 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH----CCC--eEEecc
Confidence 4555679999999999887764 465 568888
No 464
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.79 E-value=1.4 Score=47.58 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=31.3
Q ss_pred CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 83 GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 83 ~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+.+.|++.+|.+|-||||+|.-+|. +.||+|+=|-+-
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAk---qaGYsVvEINAS 360 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAK---QAGYSVVEINAS 360 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHH---hcCceEEEeccc
Confidence 45678999999999999999877664 469999888764
No 465
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=82.72 E-value=1.6 Score=48.53 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=34.6
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhh
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFA 133 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg 133 (413)
.++.|+.|+|||++...++..+...|.+|.+||-+.. ..+...+|
T Consensus 433 ~~I~G~tGsGKS~~~~~l~~~~~~~g~~v~iiD~~~sy~~l~~~~g 478 (797)
T TIGR02746 433 IAVVGGSGAGKSFFMQELIVDNLSRGGKVWVIDVGRSYKKLCEMLG 478 (797)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHHcC
Confidence 3445999999999999999988889999999876632 23444454
No 466
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=82.39 E-value=32 Score=31.18 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=32.5
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLP 354 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~ 354 (413)
+.+++|..+....-..+++.+..+.+.|++..-+++|+.--
T Consensus 90 D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 90 DGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADM 130 (195)
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 46778877776556778899999999998766688999864
No 467
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=82.12 E-value=1.8 Score=37.82 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=27.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcC--CCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHG--HPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g--~~vllvd~ 122 (413)
..++.+..|+|||++....+......+ .+++++-.
T Consensus 26 ~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 26 DVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred cEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 556668999999998888888887765 66777643
No 468
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=82.11 E-value=1.3 Score=39.55 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=25.9
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 93 ~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
|--|+||||.+..|+..|...|++ .++..-|.
T Consensus 3 GiDGsGKtT~~~~L~~~l~~~~~~-~~~~~~~~ 34 (186)
T PF02223_consen 3 GIDGSGKTTQIRLLAEALKEKGYK-VIITFPPG 34 (186)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTEE-EEEEESST
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCc-ccccCCCC
Confidence 556999999999999999999998 44444443
No 469
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=82.02 E-value=1.5 Score=40.71 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
+.++.+.|..|+||||++..||..+
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456667999999999999998765
No 470
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=81.83 E-value=0.98 Score=38.45 Aligned_cols=43 Identities=30% Similarity=0.278 Sum_probs=22.2
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcc
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQD 135 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~ 135 (413)
+.-|-+|+||||++..+|..+...=.|| -+=|.---++++|..
T Consensus 3 Lleg~PG~GKT~la~~lA~~~~~~f~RI---q~tpdllPsDi~G~~ 45 (131)
T PF07726_consen 3 LLEGVPGVGKTTLAKALARSLGLSFKRI---QFTPDLLPSDILGFP 45 (131)
T ss_dssp EEES---HHHHHHHHHHHHHTT--EEEE---E--TT--HHHHHEEE
T ss_pred eeECCCccHHHHHHHHHHHHcCCceeEE---EecCCCCcccceeee
Confidence 3458899999999999998765432232 222233345666653
No 471
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=81.69 E-value=2 Score=39.85 Aligned_cols=32 Identities=41% Similarity=0.621 Sum_probs=21.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+.++-|..|+|||..|..||..+ |..|+..|-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~---g~pvI~~Dr 34 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKT---GAPVISLDR 34 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH-----EEEEE-S
T ss_pred EEEEECCCCCChhHHHHHHHHHh---CCCEEEecc
Confidence 44455999999999998888766 666666663
No 472
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=81.62 E-value=2.4 Score=42.52 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=31.3
Q ss_pred hHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHc--CCCeeEEecCC
Q 043873 77 FDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANH--GHPTIVISTDP 124 (413)
Q Consensus 77 ~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~--g~~vllvd~Dp 124 (413)
+.+++... +-+++++|..|+||||+...+...+... +.+.++..-||
T Consensus 126 ~~~~~~~~-~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edp 174 (358)
T TIGR02524 126 IIDAIAPQ-EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAP 174 (358)
T ss_pred HHHHHhcc-CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 44444433 3466777999999999999999888653 23344444554
No 473
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=81.58 E-value=1.6 Score=48.94 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCCccHHHHHHHHHHHHHH-------cCCCeeEEecC
Q 043873 83 GTQRKHYMLGGKGGVGKTSCAASLAVKFAN-------HGHPTIVISTD 123 (413)
Q Consensus 83 ~~~~~i~~~s~kgGvGKtT~a~~lA~~la~-------~g~~vllvd~D 123 (413)
...+-..++-|.+|||||+++..||..+.. .|++++.+|+.
T Consensus 191 r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~ 238 (852)
T TIGR03346 191 RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG 238 (852)
T ss_pred cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH
Confidence 333334445599999999999999999875 58888888864
No 474
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=81.38 E-value=2.1 Score=45.32 Aligned_cols=41 Identities=22% Similarity=0.364 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCCccHHHHHHHHHHHHH-H-----cCCCeeEEecC
Q 043873 83 GTQRKHYMLGGKGGVGKTSCAASLAVKFA-N-----HGHPTIVISTD 123 (413)
Q Consensus 83 ~~~~~i~~~s~kgGvGKtT~a~~lA~~la-~-----~g~~vllvd~D 123 (413)
...+.++|+.|-.|+||||+|.+=-..|- . +++.|+++--.
T Consensus 223 ~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN 269 (747)
T COG3973 223 FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPN 269 (747)
T ss_pred ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCc
Confidence 45677999999999999999988554444 2 34557777654
No 475
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=81.33 E-value=1.3 Score=38.61 Aligned_cols=25 Identities=32% Similarity=0.611 Sum_probs=17.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHP 116 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~ 116 (413)
=+++.|+.|+||||+|..| .++|++
T Consensus 16 gvLi~G~sG~GKStlal~L----~~~g~~ 40 (149)
T cd01918 16 GVLITGPSGIGKSELALEL----IKRGHR 40 (149)
T ss_pred EEEEEcCCCCCHHHHHHHH----HHcCCe
Confidence 3455699999999998644 445654
No 476
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=81.30 E-value=2.1 Score=38.82 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=28.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
|.|+.| .|-||||-|.-+|....-+|+||++|-.
T Consensus 31 i~V~TG-~GKGKTTAAlG~alRa~GhG~rv~vvQF 64 (198)
T COG2109 31 IIVFTG-NGKGKTTAALGLALRALGHGLRVGVVQF 64 (198)
T ss_pred EEEEec-CCCChhHHHHHHHHHHhcCCCEEEEEEE
Confidence 444444 5789999999999999999999999975
No 477
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=81.23 E-value=2.8 Score=39.15 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..+.++++-|=++.|||++|..|+..|.-.|.++-+....
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g 49 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVG 49 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecc
Confidence 3477888889999999999999999999999999988853
No 478
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=81.13 E-value=5.1 Score=38.55 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=32.3
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
+.+++|.......-..+++.++.+.+.++|+. +++|+.--.
T Consensus 89 D~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~ 129 (270)
T cd01886 89 DGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRT 129 (270)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 36777777766556677899999999999985 899998754
No 479
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=81.02 E-value=1.3 Score=43.63 Aligned_cols=33 Identities=33% Similarity=0.430 Sum_probs=24.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++.|.+|+||||+|..+|..+ |.++..+...
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~ 85 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEM---GVNIRITSGP 85 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHh---CCCeEEEecc
Confidence 45667999999999999998876 4455555543
No 480
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=80.91 E-value=1.6 Score=45.22 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=29.7
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHH--cCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFAN--HGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~--~g~~vllvd~D 123 (413)
+++.|..|+|||+++..++..+.+ .|.+|+.+.++
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~ 180 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD 180 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 455699999999999999998875 47899999875
No 481
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=80.90 E-value=1.9 Score=42.68 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=27.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHH--cCCCeeEEe
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFAN--HGHPTIVIS 121 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~--~g~~vllvd 121 (413)
.++++|..|+||||+...|...+.+ .+.|++.|+
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiE 181 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILE 181 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEec
Confidence 4567899999999999999887753 356777766
No 482
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=80.88 E-value=1.8 Score=48.62 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=36.0
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhhc
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFAQ 134 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg~ 134 (413)
.++.|+.|+||||+...++..+...|.+|.++|-+.. ..+...+|.
T Consensus 452 ~~I~G~sGsGKS~l~k~l~~~~~~~g~~viiiD~~~sy~~l~~~lGG 498 (844)
T PRK13721 452 MAVCGTSGAGKTGLIQPLIRSVLDSGGFAVVFDMGDGYKSLCENMGG 498 (844)
T ss_pred EEEEcCCCCCHHHHHHHHHHhhhccCCEEEEEeCCCCHHHHHHHcCC
Confidence 4444999999999999999888888999999987743 235666653
No 483
>PLN02748 tRNA dimethylallyltransferase
Probab=80.88 E-value=1.9 Score=44.78 Aligned_cols=31 Identities=35% Similarity=0.553 Sum_probs=25.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+|||++|..||..+ ..-+|++|
T Consensus 24 ~i~i~GptgsGKs~la~~la~~~-----~~eii~~D 54 (468)
T PLN02748 24 VVVVMGPTGSGKSKLAVDLASHF-----PVEIINAD 54 (468)
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-----CeeEEcCc
Confidence 55556999999999999998765 36788999
No 484
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=80.85 E-value=2.5 Score=35.90 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=26.9
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLP 354 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~ 354 (413)
+.+++|..+.........+..+.+...+.|+ -+|+|+.--
T Consensus 84 d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~Dl 123 (168)
T cd04163 84 DLVLFVVDASEPIGEGDEFILELLKKSKTPV-ILVLNKIDL 123 (168)
T ss_pred CEEEEEEECCCccCchHHHHHHHHHHhCCCE-EEEEEchhc
Confidence 4677777766543445566677777777764 488999753
No 485
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=80.74 E-value=2.9 Score=39.29 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=29.2
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHH-----cCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFAN-----HGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~-----~g~~vllvd~D 123 (413)
.+.-|.+|+||||+-..+|..++- .++||.+||.-
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer 179 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER 179 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEecc
Confidence 334499999999999999999884 47899999973
No 486
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=80.67 E-value=2.6 Score=39.87 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=26.3
Q ss_pred hcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 81 VAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 81 ~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
+..+-+.+++ ||.|+||||+..+|-..+...=..+.++.
T Consensus 10 ~~~~fr~viI--G~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 10 LKDPFRMVII--GKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred cCCCceEEEE--CCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 3333344444 99999999999999877665433455553
No 487
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=80.59 E-value=2.1 Score=45.82 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHc
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANH 113 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~ 113 (413)
..+.+++|.+|+||||+...+...+.+.
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~~ 187 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVKQ 187 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4588889999999999999998887654
No 488
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=80.46 E-value=2.6 Score=34.69 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=21.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++.+.|..|+||||++..+. .| ++.+..-|
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~-----~G-~i~~~g~d 46 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI-----KR-KHRLVGDD 46 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh-----CC-eEEEeeEe
Confidence 455666999999999998875 33 45554444
No 489
>COG0645 Predicted kinase [General function prediction only]
Probab=80.41 E-value=1.6 Score=38.89 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHH
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la 111 (413)
.+.++.|-.|+||||+|..|+..+.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lg 26 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLG 26 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcC
Confidence 4677789999999999999988763
No 490
>PRK14737 gmk guanylate kinase; Provisional
Probab=80.36 E-value=1.8 Score=39.11 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVK 109 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~ 109 (413)
..+++++|..|+||||++-.|...
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 457888899999999999888653
No 491
>PRK00300 gmk guanylate kinase; Provisional
Probab=80.36 E-value=1.5 Score=39.90 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++++.|..|+||||++..|+..+
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 55666999999999999988865
No 492
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=80.29 E-value=2.6 Score=42.79 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHc
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANH 113 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~ 113 (413)
.+..++ +.+|+||||++.+++......
T Consensus 170 QR~lIv-gppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 170 QRGLIV-APPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred ceEEEe-CCCCCChhHHHHHHHHHHHhh
Confidence 344444 889999999999999999875
No 493
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=80.29 E-value=2.8 Score=45.37 Aligned_cols=40 Identities=30% Similarity=0.352 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
..+++++ |..|+|||++...++..+.+.|..|+++|-+..
T Consensus 176 ~~H~lv~--G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD 215 (634)
T TIGR03743 176 VGHTLVL--GTTGVGKTRLAELLITQDIRRGDVVIVIDPKGD 215 (634)
T ss_pred CCcEEEE--CCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 3455555 999999999999999999999999999996543
No 494
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=80.26 E-value=1.7 Score=39.64 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=22.7
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+.+.|..|+||||++..|+ +.| ..++|+|.
T Consensus 2 i~itG~~gsGKst~~~~l~----~~g--~~~i~~D~ 31 (196)
T PRK14732 2 IGITGMIGGGKSTALKILE----ELG--AFGISADR 31 (196)
T ss_pred EEEECCCCccHHHHHHHHH----HCC--CEEEecch
Confidence 3456999999999998775 335 56689983
No 495
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=80.22 E-value=1.7 Score=40.17 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHH
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la 111 (413)
.+++++|.=|+||||+|..||..+-
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHHhC
Confidence 3667789999999999999988774
No 496
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=80.20 E-value=9 Score=38.12 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=30.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC-----CC-CCchhhhh
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD-----PA-HSLSDSFA 133 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D-----p~-~sls~~lg 133 (413)
++++-|..|+||||+=--+|--..-.+-++.+=+-| |+ .+++..|-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeC
Confidence 445559999999999888877665455566665555 22 35655553
No 497
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=80.19 E-value=1.5 Score=42.60 Aligned_cols=30 Identities=37% Similarity=0.479 Sum_probs=23.3
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|..|+|||++|..||..+ + .-+|.+|
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~---~--~~iis~D 31 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKL---N--AEIISVD 31 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhC---C--CcEEEec
Confidence 4667999999999999998654 2 3457776
No 498
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=80.07 E-value=2.3 Score=47.52 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=34.5
Q ss_pred EEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCCCC-Cchhhhh
Q 043873 90 MLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDPAH-SLSDSFA 133 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp~~-sls~~lg 133 (413)
++.|+.|+||||+...|+..+.+ .|-+|.++|-|... .+...+|
T Consensus 445 ~I~G~tGsGKS~l~~~l~~~~~~~~g~~v~i~D~~~s~~~l~~alG 490 (811)
T PRK13873 445 LVVGPTGAGKSVLLALMALQFRRYPGAQVFAFDFGGSIRAATLAMG 490 (811)
T ss_pred EEECCCCCCHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHhcC
Confidence 34599999999999999988777 58899999998642 3455554
No 499
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=80.00 E-value=1.8 Score=38.79 Aligned_cols=34 Identities=32% Similarity=0.524 Sum_probs=25.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
++++.|..|+||||++..++..+. ...+|.|.-+
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~-----~~~i~gd~~~ 38 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFS-----AKFIDGDDLH 38 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-----CEEECCcccC
Confidence 445569999999999999988653 2477888543
No 500
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=79.97 E-value=3.2 Score=35.23 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHP 116 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~ 116 (413)
+..++-+-|-.|+|||.++.-+|..+=+.|.+
T Consensus 52 KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~ 83 (127)
T PF06309_consen 52 KPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMK 83 (127)
T ss_pred CCEEEEeecCCCCcHHHHHHHHHHHHHhcccC
Confidence 34566677999999999999999999888754
Done!