Query 043873
Match_columns 413
No_of_seqs 340 out of 2486
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 15:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iqw_A Tail-anchored protein t 100.0 4.5E-51 1.5E-55 402.1 24.1 314 75-413 5-322 (334)
2 3io3_A DEHA2D07832P; chaperone 100.0 7.9E-50 2.7E-54 395.1 20.2 312 75-413 7-331 (348)
3 3ug7_A Arsenical pump-driving 100.0 1.1E-47 3.7E-52 380.9 35.4 321 70-413 5-334 (349)
4 3zq6_A Putative arsenical pump 100.0 9.9E-47 3.4E-51 370.5 33.2 305 85-413 13-319 (324)
5 2woo_A ATPase GET3; tail-ancho 100.0 3.2E-45 1.1E-49 360.5 25.8 309 77-413 10-319 (329)
6 2woj_A ATPase GET3; tail-ancho 100.0 4E-44 1.4E-48 355.8 28.7 316 75-413 7-336 (354)
7 3igf_A ALL4481 protein; two-do 100.0 2.3E-40 7.8E-45 329.6 18.1 278 85-411 1-286 (374)
8 1ihu_A Arsenical pump-driving 100.0 9.8E-36 3.4E-40 314.4 15.0 286 85-411 7-295 (589)
9 1ihu_A Arsenical pump-driving 100.0 3E-32 1E-36 287.8 23.0 269 75-410 313-584 (589)
10 3la6_A Tyrosine-protein kinase 99.9 1.8E-24 6.1E-29 208.4 12.2 195 67-357 69-269 (286)
11 3bfv_A CAPA1, CAPB2, membrane 99.9 1.2E-23 4.1E-28 201.1 11.2 194 67-356 59-258 (271)
12 3cio_A ETK, tyrosine-protein k 99.9 2.8E-23 9.6E-28 201.3 11.3 193 68-356 82-280 (299)
13 3fwy_A Light-independent proto 99.9 3.9E-23 1.3E-27 201.4 6.6 236 84-412 47-291 (314)
14 3ea0_A ATPase, para family; al 99.9 3.4E-22 1.2E-26 186.8 12.5 181 84-357 3-187 (245)
15 3kjh_A CO dehydrogenase/acetyl 99.9 5E-23 1.7E-27 192.6 5.7 244 87-412 2-250 (254)
16 3k9g_A PF-32 protein; ssgcid, 99.9 4.1E-23 1.4E-27 196.2 2.5 190 76-353 18-208 (267)
17 3end_A Light-independent proto 99.9 1.2E-22 4E-27 197.2 5.7 181 84-354 40-225 (307)
18 4dzz_A Plasmid partitioning pr 99.9 3.9E-22 1.3E-26 181.3 8.1 51 85-135 1-51 (206)
19 2ph1_A Nucleotide-binding prot 99.9 2.1E-21 7.2E-26 184.3 13.0 181 80-354 13-194 (262)
20 1wcv_1 SOJ, segregation protei 99.8 2.2E-21 7.5E-26 183.5 11.1 173 83-355 4-182 (257)
21 1g3q_A MIND ATPase, cell divis 99.8 3.1E-20 1.1E-24 172.7 14.4 172 85-356 2-177 (237)
22 3pg5_A Uncharacterized protein 99.8 2.5E-21 8.4E-26 192.5 7.0 50 85-134 1-50 (361)
23 3ez9_A Para; DNA binding, wing 99.8 9.7E-21 3.3E-25 190.8 11.1 54 83-136 109-168 (403)
24 3ez2_A Plasmid partition prote 99.8 8.9E-21 3E-25 190.7 10.4 53 84-136 107-165 (398)
25 2oze_A ORF delta'; para, walke 99.8 1.8E-20 6.2E-25 180.7 10.7 194 73-355 22-225 (298)
26 1hyq_A MIND, cell division inh 99.8 9.7E-21 3.3E-25 179.1 8.4 172 85-355 2-175 (263)
27 3q9l_A Septum site-determining 99.8 2.6E-20 8.8E-25 175.5 9.7 175 85-354 2-185 (260)
28 3cwq_A Para family chromosome 99.8 4.3E-20 1.5E-24 169.6 7.0 48 86-134 1-48 (209)
29 2afh_E Nitrogenase iron protei 99.8 3.5E-19 1.2E-23 171.2 13.6 49 85-134 2-50 (289)
30 1cp2_A CP2, nitrogenase iron p 99.8 4.1E-19 1.4E-23 168.5 13.0 49 85-134 1-49 (269)
31 3fkq_A NTRC-like two-domain pr 99.8 1E-18 3.5E-23 174.3 11.8 55 83-137 141-195 (373)
32 2xj4_A MIPZ; replication, cell 99.8 2E-20 7E-25 179.8 -0.6 50 86-135 5-55 (286)
33 1byi_A Dethiobiotin synthase; 99.7 5.5E-16 1.9E-20 142.7 13.4 41 315-355 140-180 (224)
34 2xxa_A Signal recognition part 99.4 1.4E-12 4.6E-17 132.2 14.3 43 85-128 100-143 (433)
35 1j8m_F SRP54, signal recogniti 99.3 1.3E-11 4.5E-16 119.0 13.4 43 86-129 99-141 (297)
36 1zu4_A FTSY; GTPase, signal re 99.3 6.9E-11 2.4E-15 115.1 16.9 42 84-126 104-145 (320)
37 1ls1_A Signal recognition part 99.2 6.3E-11 2.1E-15 114.2 12.5 43 85-128 98-140 (295)
38 1yrb_A ATP(GTP)binding protein 99.2 4.4E-10 1.5E-14 105.4 15.6 43 86-129 14-56 (262)
39 2ffh_A Protein (FFH); SRP54, s 99.2 1.1E-10 3.7E-15 117.7 11.9 44 85-129 98-141 (425)
40 3fgn_A Dethiobiotin synthetase 99.1 5.8E-09 2E-13 98.0 18.6 80 315-410 159-239 (251)
41 3of5_A Dethiobiotin synthetase 99.1 3.8E-10 1.3E-14 104.7 9.3 41 315-355 142-182 (228)
42 3dm5_A SRP54, signal recogniti 99.1 1.6E-09 5.5E-14 109.4 14.5 41 87-127 101-141 (443)
43 2j37_W Signal recognition part 99.0 2.6E-09 8.9E-14 109.8 14.4 41 86-127 102-142 (504)
44 1vma_A Cell division protein F 99.0 5.8E-09 2E-13 100.8 15.2 41 85-126 104-144 (306)
45 3qxc_A Dethiobiotin synthetase 98.9 1.5E-08 5E-13 94.7 15.1 45 77-121 13-57 (242)
46 3kl4_A SRP54, signal recogniti 98.9 1.1E-08 3.9E-13 103.1 14.0 39 87-125 98-136 (433)
47 2v3c_C SRP54, signal recogniti 98.9 1.1E-08 3.8E-13 103.4 13.2 41 86-127 100-140 (432)
48 2px0_A Flagellar biosynthesis 98.8 5.2E-08 1.8E-12 93.7 14.3 41 85-126 105-146 (296)
49 2r8r_A Sensor protein; KDPD, P 98.8 6.7E-09 2.3E-13 95.5 7.0 48 85-132 5-52 (228)
50 3p32_A Probable GTPase RV1496/ 98.6 3.1E-07 1.1E-11 90.5 13.7 42 86-127 79-120 (355)
51 2yhs_A FTSY, cell division pro 97.9 0.0002 6.8E-09 73.1 15.2 41 85-126 293-333 (503)
52 1g5t_A COB(I)alamin adenosyltr 97.8 0.00014 4.9E-09 65.2 11.7 38 86-124 29-66 (196)
53 3pzx_A Formate--tetrahydrofola 97.8 2.4E-05 8.4E-10 78.5 6.9 52 84-137 56-110 (557)
54 1rj9_A FTSY, signal recognitio 97.5 0.0035 1.2E-07 60.0 17.3 40 85-125 102-141 (304)
55 3e70_C DPA, signal recognition 97.3 0.0026 9E-08 61.6 13.8 39 87-125 130-168 (328)
56 1u94_A RECA protein, recombina 97.3 0.00026 8.9E-09 69.5 6.0 56 69-124 43-101 (356)
57 2dr3_A UPF0273 protein PH0284; 97.1 0.00064 2.2E-08 62.1 6.0 54 71-124 6-61 (247)
58 4a0g_A Adenosylmethionine-8-am 97.1 0.004 1.4E-07 67.8 13.2 39 315-353 233-271 (831)
59 2yvu_A Probable adenylyl-sulfa 97.0 0.00064 2.2E-08 59.7 5.2 39 86-124 13-51 (186)
60 2zts_A Putative uncharacterize 96.9 0.00098 3.4E-08 60.8 5.9 55 70-124 12-69 (251)
61 1xp8_A RECA protein, recombina 96.9 0.00082 2.8E-08 66.2 5.6 55 69-124 54-112 (366)
62 2p67_A LAO/AO transport system 96.8 0.0013 4.6E-08 63.9 6.4 42 85-127 56-97 (341)
63 2cvh_A DNA repair and recombin 96.8 0.0013 4.4E-08 58.9 5.8 53 71-126 3-57 (220)
64 3bh0_A DNAB-like replicative h 96.8 0.0013 4.6E-08 63.2 6.2 54 70-123 51-105 (315)
65 2obn_A Hypothetical protein; s 96.7 0.023 7.7E-07 55.3 14.1 38 84-121 151-188 (349)
66 3bgw_A DNAB-like replicative h 96.7 0.0016 5.5E-08 65.8 6.1 56 69-124 179-235 (444)
67 2zr9_A Protein RECA, recombina 96.7 0.0015 5.2E-08 63.9 5.6 56 69-124 41-99 (349)
68 1xjc_A MOBB protein homolog; s 96.7 0.002 6.8E-08 56.4 5.7 40 85-125 4-43 (169)
69 4a1f_A DNAB helicase, replicat 96.6 0.0022 7.5E-08 62.4 6.1 55 70-124 29-84 (338)
70 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0034 1.2E-07 56.4 5.8 52 72-124 7-61 (235)
71 3hr8_A Protein RECA; alpha and 96.5 0.005 1.7E-07 60.3 7.4 56 70-125 42-100 (356)
72 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0029 9.8E-08 59.0 5.2 37 87-123 5-41 (260)
73 1q57_A DNA primase/helicase; d 96.3 0.0039 1.3E-07 63.8 6.0 55 70-124 224-281 (503)
74 2q6t_A DNAB replication FORK h 96.2 0.005 1.7E-07 62.0 6.2 55 70-124 183-239 (444)
75 2r6a_A DNAB helicase, replicat 96.1 0.008 2.7E-07 60.7 7.0 55 70-124 186-242 (454)
76 3io5_A Recombination and repai 96.1 0.0056 1.9E-07 58.9 5.5 53 70-123 7-67 (333)
77 2wsm_A Hydrogenase expression/ 96.1 0.0044 1.5E-07 55.5 4.5 39 87-126 31-69 (221)
78 1nks_A Adenylate kinase; therm 96.0 0.0047 1.6E-07 53.9 4.2 36 88-123 3-38 (194)
79 1s1m_A CTP synthase; CTP synth 96.0 0.042 1.4E-06 56.6 11.7 42 86-127 4-46 (545)
80 2z43_A DNA repair and recombin 95.9 0.0044 1.5E-07 59.7 3.5 55 70-124 89-151 (324)
81 1v5w_A DMC1, meiotic recombina 95.8 0.0072 2.5E-07 58.8 5.0 56 69-124 103-166 (343)
82 3bos_A Putative DNA replicatio 95.7 0.012 4.1E-07 52.9 5.8 49 75-123 41-89 (242)
83 2rdo_7 EF-G, elongation factor 95.7 0.025 8.4E-07 60.4 8.8 41 314-355 107-147 (704)
84 1m7g_A Adenylylsulfate kinase; 95.7 0.011 3.8E-07 52.9 5.2 40 85-124 24-64 (211)
85 1rz3_A Hypothetical protein rb 95.6 0.013 4.4E-07 52.1 5.5 40 86-125 22-61 (201)
86 1vco_A CTP synthetase; tetrame 95.6 0.12 4.2E-06 53.1 13.3 42 86-127 13-55 (550)
87 3b9q_A Chloroplast SRP recepto 95.6 0.017 5.8E-07 55.1 6.5 39 86-125 101-139 (302)
88 1np6_A Molybdopterin-guanine d 95.6 0.016 5.5E-07 50.7 5.7 38 88-125 8-45 (174)
89 1n0w_A DNA repair protein RAD5 95.5 0.008 2.7E-07 54.5 3.8 55 70-124 6-68 (243)
90 3uie_A Adenylyl-sulfate kinase 95.5 0.016 5.4E-07 51.4 5.6 39 86-124 25-63 (200)
91 2w58_A DNAI, primosome compone 95.4 0.013 4.5E-07 51.8 4.6 35 88-122 56-90 (202)
92 2og2_A Putative signal recogni 95.4 0.022 7.4E-07 55.8 6.5 40 85-125 157-196 (359)
93 1kht_A Adenylate kinase; phosp 95.3 0.011 3.8E-07 51.4 3.9 36 88-123 5-40 (192)
94 1uj2_A Uridine-cytidine kinase 95.3 0.012 4E-07 54.4 4.1 39 86-124 22-65 (252)
95 1cr0_A DNA primase/helicase; R 95.3 0.031 1.1E-06 52.7 7.1 52 73-124 21-74 (296)
96 2pez_A Bifunctional 3'-phospho 95.2 0.018 6.3E-07 49.8 5.0 37 88-124 7-43 (179)
97 3ec2_A DNA replication protein 95.2 0.017 5.9E-07 50.0 4.8 35 87-121 39-74 (180)
98 2hf9_A Probable hydrogenase ni 95.2 0.015 5E-07 52.2 4.4 39 86-126 39-77 (226)
99 2i1q_A DNA repair and recombin 95.2 0.011 3.6E-07 56.8 3.6 55 70-124 80-152 (322)
100 1a7j_A Phosphoribulokinase; tr 95.2 0.011 3.6E-07 56.2 3.4 40 87-126 6-45 (290)
101 1qhx_A CPT, protein (chloramph 95.0 0.013 4.5E-07 50.5 3.4 34 87-123 4-37 (178)
102 2b8t_A Thymidine kinase; deoxy 95.0 0.028 9.4E-07 51.3 5.5 35 87-121 13-47 (223)
103 3bs4_A Uncharacterized protein 94.9 0.035 1.2E-06 51.8 6.1 53 71-123 4-58 (260)
104 2gks_A Bifunctional SAT/APS ki 94.9 0.023 7.9E-07 58.8 5.3 39 86-124 372-410 (546)
105 1jbk_A CLPB protein; beta barr 94.9 0.023 8E-07 48.7 4.5 38 75-112 32-69 (195)
106 2pbr_A DTMP kinase, thymidylat 94.8 0.034 1.2E-06 48.3 5.5 34 88-121 2-35 (195)
107 2vhj_A Ntpase P4, P4; non- hyd 94.7 0.011 3.7E-07 57.0 2.1 48 72-122 108-156 (331)
108 2z0h_A DTMP kinase, thymidylat 94.7 0.036 1.2E-06 48.4 5.3 35 88-122 2-36 (197)
109 2ehv_A Hypothetical protein PH 94.6 0.044 1.5E-06 49.7 6.0 53 71-124 13-69 (251)
110 2orw_A Thymidine kinase; TMTK, 94.6 0.029 9.8E-07 49.4 4.4 35 88-122 5-39 (184)
111 2p65_A Hypothetical protein PF 94.6 0.032 1.1E-06 47.7 4.6 38 76-113 33-70 (187)
112 1ly1_A Polynucleotide kinase; 94.5 0.029 9.9E-07 48.1 4.1 34 86-123 2-35 (181)
113 2qgz_A Helicase loader, putati 94.4 0.036 1.2E-06 52.9 5.0 36 88-123 154-190 (308)
114 3cmw_A Protein RECA, recombina 94.2 0.037 1.3E-06 64.1 5.5 58 69-126 363-423 (1706)
115 1nlf_A Regulatory protein REPA 94.2 0.029 1E-06 52.4 3.9 25 88-112 32-56 (279)
116 1xx6_A Thymidine kinase; NESG, 94.2 0.058 2E-06 47.9 5.5 35 87-121 9-43 (191)
117 3cmw_A Protein RECA, recombina 94.2 0.04 1.4E-06 63.9 5.5 57 69-125 712-771 (1706)
118 2kjq_A DNAA-related protein; s 94.1 0.045 1.5E-06 46.4 4.6 36 88-123 38-73 (149)
119 3lda_A DNA repair protein RAD5 94.0 0.028 9.6E-07 55.8 3.5 55 69-123 159-221 (400)
120 1x6v_B Bifunctional 3'-phospho 94.0 0.052 1.8E-06 57.0 5.5 38 86-123 52-89 (630)
121 1m8p_A Sulfate adenylyltransfe 94.0 0.045 1.5E-06 56.9 5.0 39 86-124 396-435 (573)
122 3cmu_A Protein RECA, recombina 93.9 0.043 1.5E-06 64.5 5.1 55 70-124 1408-1465(2050)
123 2plr_A DTMP kinase, probable t 93.8 0.057 2E-06 47.5 4.8 34 87-121 5-38 (213)
124 1nn5_A Similar to deoxythymidy 93.8 0.065 2.2E-06 47.4 5.2 34 88-121 11-44 (215)
125 3nva_A CTP synthase; rossman f 93.8 1.5 5E-05 44.8 15.4 42 86-127 4-46 (535)
126 2c5m_A CTP synthase; cytidine 93.8 1 3.6E-05 41.5 12.9 45 83-127 21-66 (294)
127 2vo1_A CTP synthase 1; pyrimid 93.8 0.55 1.9E-05 43.6 11.2 45 83-127 21-66 (295)
128 2axn_A 6-phosphofructo-2-kinas 93.7 0.055 1.9E-06 55.6 5.1 39 85-123 34-72 (520)
129 1qf9_A UMP/CMP kinase, protein 93.7 0.046 1.6E-06 47.3 3.9 34 85-123 5-38 (194)
130 3kb2_A SPBC2 prophage-derived 93.7 0.044 1.5E-06 46.6 3.6 32 88-124 3-34 (173)
131 2h5e_A Peptide chain release f 93.7 0.14 4.7E-06 52.8 7.9 42 313-355 106-147 (529)
132 3trf_A Shikimate kinase, SK; a 93.7 0.038 1.3E-06 47.9 3.3 31 88-123 7-37 (185)
133 3t61_A Gluconokinase; PSI-biol 93.6 0.042 1.4E-06 48.5 3.6 32 88-124 20-51 (202)
134 1gvn_B Zeta; postsegregational 93.6 0.045 1.6E-06 51.7 4.0 35 86-123 33-67 (287)
135 2rhm_A Putative kinase; P-loop 93.6 0.052 1.8E-06 47.2 4.0 33 86-123 5-37 (193)
136 2p5t_B PEZT; postsegregational 93.5 0.051 1.7E-06 50.1 4.0 36 86-124 32-67 (253)
137 3lw7_A Adenylate kinase relate 93.5 0.037 1.3E-06 46.9 2.8 27 88-118 3-29 (179)
138 2r2a_A Uncharacterized protein 93.4 0.051 1.8E-06 48.5 3.7 38 86-123 5-48 (199)
139 2ze6_A Isopentenyl transferase 93.3 0.073 2.5E-06 49.2 4.8 32 88-124 3-34 (253)
140 4eun_A Thermoresistant glucoki 93.3 0.067 2.3E-06 47.2 4.4 33 87-124 30-62 (200)
141 4a74_A DNA repair and recombin 93.3 0.062 2.1E-06 48.0 4.2 54 70-123 7-68 (231)
142 1g8f_A Sulfate adenylyltransfe 93.3 0.074 2.5E-06 54.5 5.1 38 87-124 396-435 (511)
143 3cmu_A Protein RECA, recombina 93.3 0.064 2.2E-06 63.0 5.1 56 70-125 364-422 (2050)
144 2chg_A Replication factor C sm 93.2 0.046 1.6E-06 48.0 3.1 50 74-123 26-75 (226)
145 2wwf_A Thymidilate kinase, put 93.2 0.092 3.2E-06 46.3 5.0 35 87-121 11-45 (212)
146 1e6c_A Shikimate kinase; phosp 93.2 0.049 1.7E-06 46.5 3.1 31 88-123 4-34 (173)
147 3ld9_A DTMP kinase, thymidylat 93.1 0.097 3.3E-06 47.6 5.1 41 86-126 21-62 (223)
148 1pzn_A RAD51, DNA repair and r 93.0 0.064 2.2E-06 52.2 4.1 55 70-124 113-175 (349)
149 2iyv_A Shikimate kinase, SK; t 93.0 0.035 1.2E-06 48.1 2.0 31 88-123 4-34 (184)
150 3d3q_A TRNA delta(2)-isopenten 92.9 0.08 2.7E-06 51.3 4.4 35 86-125 7-41 (340)
151 1tev_A UMP-CMP kinase; ploop, 92.8 0.077 2.6E-06 45.9 4.0 32 87-123 4-35 (196)
152 1gtv_A TMK, thymidylate kinase 92.8 0.034 1.2E-06 49.3 1.6 35 88-122 2-36 (214)
153 3upu_A ATP-dependent DNA helic 92.8 0.13 4.5E-06 51.7 6.2 35 88-122 47-82 (459)
154 1l8q_A Chromosomal replication 92.8 0.1 3.4E-06 49.7 5.0 35 89-123 40-74 (324)
155 4edh_A DTMP kinase, thymidylat 92.8 0.13 4.3E-06 46.4 5.4 39 87-126 7-45 (213)
156 2qby_B CDC6 homolog 3, cell di 92.7 0.093 3.2E-06 50.8 4.7 37 87-123 46-90 (384)
157 3c8u_A Fructokinase; YP_612366 92.7 0.14 4.9E-06 45.4 5.6 38 87-124 23-60 (208)
158 3iev_A GTP-binding protein ERA 92.6 0.23 7.9E-06 47.2 7.3 40 314-354 94-134 (308)
159 1via_A Shikimate kinase; struc 92.6 0.06 2.1E-06 46.3 2.9 31 88-123 6-36 (175)
160 2j9r_A Thymidine kinase; TK1, 92.4 0.18 6.3E-06 45.5 5.9 36 86-121 28-63 (214)
161 2v1u_A Cell division control p 92.4 0.12 4E-06 49.9 5.0 40 87-126 45-90 (387)
162 3n70_A Transport activator; si 92.4 0.057 1.9E-06 45.2 2.4 33 90-123 28-60 (145)
163 3vaa_A Shikimate kinase, SK; s 92.4 0.077 2.6E-06 46.8 3.3 31 88-123 27-57 (199)
164 4b3f_X DNA-binding protein smu 92.4 0.12 3.9E-06 54.6 5.3 35 88-122 207-241 (646)
165 1y63_A LMAJ004144AAA protein; 92.4 0.085 2.9E-06 45.9 3.6 32 88-123 12-43 (184)
166 3tqc_A Pantothenate kinase; bi 92.3 0.13 4.4E-06 49.4 5.1 40 86-125 92-133 (321)
167 2f1r_A Molybdopterin-guanine d 92.3 0.14 4.8E-06 44.4 4.8 38 86-124 3-40 (171)
168 1knq_A Gluconate kinase; ALFA/ 92.3 0.15 5.1E-06 43.6 5.0 33 87-124 9-41 (175)
169 2cdn_A Adenylate kinase; phosp 92.3 0.1 3.5E-06 45.9 4.0 33 86-123 20-52 (201)
170 3e1s_A Exodeoxyribonuclease V, 92.2 0.13 4.4E-06 53.5 5.3 35 87-121 205-239 (574)
171 1odf_A YGR205W, hypothetical 3 92.1 0.11 3.9E-06 49.1 4.4 40 86-125 31-73 (290)
172 2www_A Methylmalonic aciduria 92.1 0.21 7.2E-06 48.4 6.4 41 87-127 75-115 (349)
173 3hjn_A DTMP kinase, thymidylat 92.1 0.17 5.9E-06 44.8 5.3 35 88-122 2-36 (197)
174 1zp6_A Hypothetical protein AT 92.0 0.11 3.7E-06 45.1 3.9 34 87-123 10-43 (191)
175 2c95_A Adenylate kinase 1; tra 91.9 0.096 3.3E-06 45.5 3.4 31 88-123 11-41 (196)
176 2v54_A DTMP kinase, thymidylat 91.9 0.08 2.7E-06 46.4 2.9 33 88-122 6-38 (204)
177 2bwj_A Adenylate kinase 5; pho 91.8 0.066 2.2E-06 46.7 2.2 32 87-123 13-44 (199)
178 2pt5_A Shikimate kinase, SK; a 91.8 0.1 3.5E-06 44.2 3.4 31 88-123 2-32 (168)
179 1fnn_A CDC6P, cell division co 91.8 0.18 6.1E-06 48.7 5.5 40 88-127 46-86 (389)
180 3cm0_A Adenylate kinase; ATP-b 91.8 0.12 4.1E-06 44.6 3.8 32 87-123 5-36 (186)
181 2if2_A Dephospho-COA kinase; a 91.8 0.088 3E-06 46.3 3.0 30 88-123 3-32 (204)
182 1w5s_A Origin recognition comp 91.7 0.18 6.3E-06 49.1 5.6 42 86-127 50-99 (412)
183 1ukz_A Uridylate kinase; trans 91.7 0.11 3.8E-06 45.6 3.6 33 86-123 15-47 (203)
184 1kag_A SKI, shikimate kinase I 91.7 0.081 2.8E-06 45.1 2.5 31 88-123 6-36 (173)
185 3crm_A TRNA delta(2)-isopenten 91.6 0.12 4E-06 49.8 3.9 34 86-124 5-38 (323)
186 1zuh_A Shikimate kinase; alpha 91.6 0.095 3.3E-06 44.6 2.9 31 88-123 9-39 (168)
187 2grj_A Dephospho-COA kinase; T 91.6 0.13 4.5E-06 45.5 3.9 33 86-123 12-44 (192)
188 1uf9_A TT1252 protein; P-loop, 91.5 0.092 3.1E-06 45.9 2.8 31 87-123 9-39 (203)
189 1d2e_A Elongation factor TU (E 91.4 1.2 4E-05 43.8 11.1 43 313-355 90-132 (397)
190 3lv8_A DTMP kinase, thymidylat 91.3 0.22 7.6E-06 45.6 5.3 40 87-126 28-67 (236)
191 3t15_A Ribulose bisphosphate c 91.3 0.14 4.9E-06 48.2 4.1 32 88-122 38-69 (293)
192 3iij_A Coilin-interacting nucl 91.2 0.11 3.9E-06 44.6 3.1 31 88-123 13-43 (180)
193 1sq5_A Pantothenate kinase; P- 91.2 0.17 5.9E-06 48.0 4.6 38 87-124 81-120 (308)
194 4fcw_A Chaperone protein CLPB; 91.1 0.19 6.4E-06 47.1 4.7 38 87-124 48-85 (311)
195 1ltq_A Polynucleotide kinase; 91.0 0.13 4.5E-06 48.2 3.5 34 86-123 2-35 (301)
196 1wf3_A GTP-binding protein; GT 91.0 0.65 2.2E-05 43.9 8.4 46 307-355 83-130 (301)
197 3v9p_A DTMP kinase, thymidylat 90.9 0.18 6.2E-06 45.9 4.2 38 87-125 26-67 (227)
198 2qby_A CDC6 homolog 1, cell di 90.9 0.16 5.3E-06 48.9 4.0 37 88-124 47-86 (386)
199 4eaq_A DTMP kinase, thymidylat 90.9 0.24 8.3E-06 44.9 5.0 35 86-121 26-60 (229)
200 3foz_A TRNA delta(2)-isopenten 90.8 0.28 9.7E-06 46.8 5.6 35 85-124 9-43 (316)
201 1jjv_A Dephospho-COA kinase; P 90.7 0.13 4.5E-06 45.3 3.1 31 87-123 3-33 (206)
202 1tf7_A KAIC; homohexamer, hexa 90.7 0.23 8E-06 50.8 5.3 51 73-123 266-318 (525)
203 3syl_A Protein CBBX; photosynt 90.6 0.2 6.8E-06 47.0 4.4 35 88-122 69-107 (309)
204 1dar_A EF-G, elongation factor 90.6 0.33 1.1E-05 51.6 6.5 41 314-355 102-142 (691)
205 3tlx_A Adenylate kinase 2; str 90.4 0.21 7.2E-06 45.6 4.2 33 86-123 29-61 (243)
206 3ake_A Cytidylate kinase; CMP 90.2 0.14 4.8E-06 44.9 2.7 31 88-123 4-34 (208)
207 2z4s_A Chromosomal replication 90.1 0.23 8E-06 49.7 4.6 36 88-123 132-169 (440)
208 4tmk_A Protein (thymidylate ki 90.0 0.35 1.2E-05 43.5 5.2 40 87-127 4-44 (213)
209 2qt1_A Nicotinamide riboside k 90.0 0.14 4.9E-06 45.1 2.7 34 87-124 22-55 (207)
210 3exa_A TRNA delta(2)-isopenten 89.9 0.25 8.5E-06 47.4 4.3 33 87-124 4-36 (322)
211 1ak2_A Adenylate kinase isoenz 89.9 0.21 7.3E-06 45.1 3.7 31 88-123 18-48 (233)
212 3fb4_A Adenylate kinase; psych 89.8 0.23 7.7E-06 44.0 3.8 30 89-123 3-32 (216)
213 2bjv_A PSP operon transcriptio 89.7 0.18 6.1E-06 46.4 3.1 35 89-123 32-66 (265)
214 3a8t_A Adenylate isopentenyltr 89.7 0.22 7.5E-06 48.1 3.8 33 87-124 41-73 (339)
215 3be4_A Adenylate kinase; malar 89.6 0.16 5.5E-06 45.4 2.7 31 88-123 7-37 (217)
216 2xex_A Elongation factor G; GT 89.6 0.83 2.8E-05 48.5 8.6 41 314-355 100-140 (693)
217 4hlc_A DTMP kinase, thymidylat 89.5 0.33 1.1E-05 43.3 4.6 34 87-121 3-36 (205)
218 3asz_A Uridine kinase; cytidin 89.4 0.26 8.9E-06 43.5 3.9 34 88-124 8-41 (211)
219 2qm8_A GTPase/ATPase; G protei 89.3 0.48 1.6E-05 45.7 5.9 39 87-125 56-94 (337)
220 1e4v_A Adenylate kinase; trans 89.3 0.23 7.9E-06 44.1 3.4 30 89-123 3-32 (214)
221 2vli_A Antibiotic resistance p 89.2 0.14 4.7E-06 44.0 1.8 28 88-118 7-34 (183)
222 1vht_A Dephospho-COA kinase; s 89.2 0.28 9.7E-06 43.5 4.0 31 87-123 5-35 (218)
223 2orv_A Thymidine kinase; TP4A 88.9 0.49 1.7E-05 43.2 5.3 36 86-121 19-54 (234)
224 1aky_A Adenylate kinase; ATP:A 88.9 0.26 9E-06 43.9 3.5 31 88-123 6-36 (220)
225 1ofh_A ATP-dependent HSL prote 88.8 0.38 1.3E-05 44.8 4.8 32 89-123 53-84 (310)
226 2xb4_A Adenylate kinase; ATP-b 88.7 0.25 8.5E-06 44.4 3.3 31 88-123 2-32 (223)
227 2jaq_A Deoxyguanosine kinase; 88.6 0.29 1E-05 42.5 3.6 23 88-110 2-24 (205)
228 2f6r_A COA synthase, bifunctio 88.5 0.3 1E-05 45.7 3.8 32 86-123 75-106 (281)
229 3dl0_A Adenylate kinase; phosp 88.5 0.25 8.5E-06 43.8 3.1 30 89-123 3-32 (216)
230 3do6_A Formate--tetrahydrofola 88.3 0.94 3.2E-05 45.4 7.2 51 85-137 43-96 (543)
231 1bif_A 6-phosphofructo-2-kinas 88.3 0.42 1.4E-05 48.1 5.0 39 85-123 38-76 (469)
232 1zd8_A GTP:AMP phosphotransfer 88.3 0.2 6.9E-06 44.9 2.4 32 87-123 8-39 (227)
233 1w36_D RECD, exodeoxyribonucle 88.2 0.4 1.4E-05 50.1 4.8 34 87-120 165-202 (608)
234 2qz4_A Paraplegin; AAA+, SPG7, 88.1 0.5 1.7E-05 42.9 5.0 32 89-123 42-73 (262)
235 1zak_A Adenylate kinase; ATP:A 88.1 0.24 8.2E-06 44.2 2.7 31 88-123 7-37 (222)
236 4ag6_A VIRB4 ATPase, type IV s 87.7 0.52 1.8E-05 46.1 5.1 34 90-123 39-72 (392)
237 1tue_A Replication protein E1; 87.7 0.39 1.3E-05 43.2 3.7 35 76-110 47-82 (212)
238 3te6_A Regulatory protein SIR3 87.6 0.67 2.3E-05 44.4 5.6 31 83-113 42-72 (318)
239 3pxg_A Negative regulator of g 87.6 0.35 1.2E-05 48.8 3.9 49 75-123 190-245 (468)
240 1d2n_A N-ethylmaleimide-sensit 87.3 0.76 2.6E-05 42.3 5.7 35 85-122 63-97 (272)
241 2jeo_A Uridine-cytidine kinase 87.2 0.57 2E-05 42.6 4.8 38 87-124 26-68 (245)
242 2gk6_A Regulator of nonsense t 87.2 0.5 1.7E-05 49.5 4.9 34 88-121 197-231 (624)
243 3zvl_A Bifunctional polynucleo 87.2 0.23 8E-06 49.3 2.2 34 86-124 258-291 (416)
244 3eph_A TRNA isopentenyltransfe 86.9 0.62 2.1E-05 46.1 5.1 33 87-124 3-35 (409)
245 2qor_A Guanylate kinase; phosp 86.8 0.28 9.5E-06 43.3 2.3 23 88-110 14-36 (204)
246 2bdt_A BH3686; alpha-beta prot 86.6 0.43 1.5E-05 41.2 3.4 33 87-123 3-35 (189)
247 2j69_A Bacterial dynamin-like 86.4 3.2 0.00011 43.9 10.6 41 313-354 201-242 (695)
248 3ney_A 55 kDa erythrocyte memb 86.3 0.43 1.5E-05 42.4 3.3 24 86-109 19-42 (197)
249 1hqc_A RUVB; extended AAA-ATPa 86.1 0.61 2.1E-05 43.8 4.5 43 88-133 40-82 (324)
250 1c9k_A COBU, adenosylcobinamid 86.1 0.34 1.2E-05 42.4 2.4 31 89-123 2-32 (180)
251 1um8_A ATP-dependent CLP prote 86.0 0.57 1.9E-05 45.5 4.3 32 89-123 75-106 (376)
252 3cr8_A Sulfate adenylyltranfer 86.0 0.44 1.5E-05 49.2 3.6 38 87-124 370-408 (552)
253 3umf_A Adenylate kinase; rossm 85.7 0.64 2.2E-05 41.9 4.1 23 88-110 31-53 (217)
254 1lv7_A FTSH; alpha/beta domain 85.6 0.76 2.6E-05 41.8 4.7 31 89-122 48-78 (257)
255 1njg_A DNA polymerase III subu 85.5 0.55 1.9E-05 41.3 3.6 26 88-113 47-72 (250)
256 3aez_A Pantothenate kinase; tr 85.5 0.96 3.3E-05 43.1 5.5 40 86-125 90-131 (312)
257 2npi_A Protein CLP1; CLP1-PCF1 85.2 0.47 1.6E-05 47.8 3.3 47 85-132 138-185 (460)
258 2r44_A Uncharacterized protein 85.2 0.79 2.7E-05 43.4 4.8 42 90-134 50-91 (331)
259 2wjy_A Regulator of nonsense t 85.1 0.71 2.4E-05 49.8 4.9 34 88-121 373-407 (800)
260 1sxj_A Activator 1 95 kDa subu 85.1 0.57 2E-05 47.8 3.9 34 87-123 78-111 (516)
261 2a5y_B CED-4; apoptosis; HET: 85.0 0.44 1.5E-05 49.0 3.1 22 87-108 153-174 (549)
262 1iqp_A RFCS; clamp loader, ext 85.0 0.35 1.2E-05 45.3 2.2 40 75-114 35-74 (327)
263 1ojl_A Transcriptional regulat 84.7 0.46 1.6E-05 45.0 2.8 36 89-124 28-63 (304)
264 3tau_A Guanylate kinase, GMP k 84.7 0.54 1.9E-05 41.6 3.1 23 88-110 10-32 (208)
265 1kgd_A CASK, peripheral plasma 84.6 0.54 1.8E-05 40.5 3.0 23 88-110 7-29 (180)
266 2ewv_A Twitching motility prot 84.4 1.3 4.3E-05 43.3 5.9 36 87-122 137-173 (372)
267 1cke_A CK, MSSA, protein (cyti 84.4 0.67 2.3E-05 41.1 3.7 31 88-123 7-37 (227)
268 3ch4_B Pmkase, phosphomevalona 84.3 0.75 2.6E-05 41.0 3.8 26 85-110 10-35 (202)
269 3h4m_A Proteasome-activating n 84.2 0.71 2.4E-05 42.6 3.9 31 89-122 54-84 (285)
270 1sxj_B Activator 1 37 kDa subu 84.2 0.44 1.5E-05 44.6 2.5 47 75-122 31-80 (323)
271 3sr0_A Adenylate kinase; phosp 84.2 0.69 2.3E-05 41.3 3.6 21 90-110 4-24 (206)
272 1z6t_A APAF-1, apoptotic prote 84.1 0.73 2.5E-05 47.4 4.2 50 75-124 134-189 (591)
273 3u61_B DNA polymerase accessor 83.9 0.7 2.4E-05 43.6 3.7 47 74-123 35-82 (324)
274 3hws_A ATP-dependent CLP prote 83.8 0.75 2.6E-05 44.4 4.0 31 89-122 54-84 (363)
275 2xzl_A ATP-dependent helicase 83.2 1 3.4E-05 48.7 5.0 35 88-122 377-412 (802)
276 1sxj_C Activator 1 40 kDa subu 83.0 0.55 1.9E-05 44.9 2.6 49 75-123 35-83 (340)
277 3jvv_A Twitching mobility prot 82.9 1.7 5.8E-05 42.2 6.1 45 76-121 114-159 (356)
278 3tqf_A HPR(Ser) kinase; transf 82.8 0.74 2.5E-05 40.2 3.1 25 88-116 18-42 (181)
279 1qvr_A CLPB protein; coiled co 82.8 0.69 2.4E-05 50.3 3.6 35 89-123 194-235 (854)
280 2eyu_A Twitching motility prot 82.7 1.5 5.2E-05 40.4 5.4 37 87-123 26-63 (261)
281 1p9r_A General secretion pathw 82.6 1.5 5.1E-05 43.6 5.6 47 76-123 158-204 (418)
282 1xwi_A SKD1 protein; VPS4B, AA 82.4 0.95 3.2E-05 43.1 4.0 33 89-123 48-80 (322)
283 2fna_A Conserved hypothetical 82.2 1.1 3.9E-05 42.1 4.5 33 88-123 32-64 (357)
284 3r20_A Cytidylate kinase; stru 82.2 0.86 2.9E-05 41.6 3.4 32 87-123 10-41 (233)
285 3e2i_A Thymidine kinase; Zn-bi 82.2 1.6 5.5E-05 39.4 5.1 36 86-121 28-63 (219)
286 2j41_A Guanylate kinase; GMP, 82.1 0.78 2.7E-05 39.9 3.1 23 88-110 8-30 (207)
287 1sxj_D Activator 1 41 kDa subu 82.1 1.3 4.5E-05 41.9 4.9 38 75-112 47-84 (353)
288 2bbw_A Adenylate kinase 4, AK4 81.9 0.92 3.1E-05 41.1 3.6 23 88-110 29-51 (246)
289 3b9p_A CG5977-PA, isoform A; A 81.9 1 3.5E-05 41.8 4.0 32 88-122 56-87 (297)
290 3ice_A Transcription terminati 81.8 2.8 9.4E-05 41.4 7.0 45 72-117 160-205 (422)
291 3vqt_A RF-3, peptide chain rel 81.7 3.9 0.00013 42.0 8.6 43 313-356 124-166 (548)
292 2chq_A Replication factor C sm 81.4 0.59 2E-05 43.6 2.1 35 89-123 41-77 (319)
293 1vt4_I APAF-1 related killer D 81.4 1.8 6.3E-05 48.1 6.2 54 75-128 138-195 (1221)
294 2qp9_X Vacuolar protein sortin 81.1 1.1 3.8E-05 43.2 4.0 30 90-122 88-117 (355)
295 3eie_A Vacuolar protein sortin 81.0 1.2 4E-05 42.3 4.1 32 88-122 53-84 (322)
296 3pxi_A Negative regulator of g 80.9 1.3 4.3E-05 47.4 4.8 36 88-123 523-558 (758)
297 1ex7_A Guanylate kinase; subst 80.7 0.82 2.8E-05 40.1 2.6 20 89-108 4-23 (186)
298 3d8b_A Fidgetin-like protein 1 80.6 1.1 3.8E-05 43.2 3.8 32 88-122 119-150 (357)
299 3tr0_A Guanylate kinase, GMP k 80.5 0.96 3.3E-05 39.3 3.1 23 88-110 9-31 (205)
300 2h92_A Cytidylate kinase; ross 80.5 0.65 2.2E-05 41.1 1.9 31 88-123 5-35 (219)
301 1w4r_A Thymidine kinase; type 80.0 2.3 7.8E-05 37.6 5.3 37 86-122 20-56 (195)
302 1nij_A Hypothetical protein YJ 79.9 1.1 3.6E-05 42.7 3.3 36 87-124 5-40 (318)
303 1e9r_A Conjugal transfer prote 79.6 1.4 4.8E-05 43.6 4.3 35 86-122 55-89 (437)
304 2qmh_A HPR kinase/phosphorylas 79.5 1.1 3.7E-05 40.0 3.0 31 87-123 35-65 (205)
305 3cf0_A Transitional endoplasmi 79.3 1.2 3.9E-05 41.9 3.4 31 88-121 51-81 (301)
306 1in4_A RUVB, holliday junction 79.1 1.2 4E-05 42.6 3.4 23 88-110 53-75 (334)
307 2ga8_A Hypothetical 39.9 kDa p 79.1 1.7 6E-05 42.1 4.6 31 81-111 19-49 (359)
308 3pxi_A Negative regulator of g 78.7 1.3 4.3E-05 47.4 3.9 37 76-112 191-227 (758)
309 3a00_A Guanylate kinase, GMP k 78.7 1 3.5E-05 38.9 2.6 24 88-111 3-26 (186)
310 3pfi_A Holliday junction ATP-d 78.7 1.7 5.6E-05 41.2 4.3 34 88-124 57-90 (338)
311 3uk6_A RUVB-like 2; hexameric 78.5 1.1 3.7E-05 43.0 3.0 24 88-111 72-95 (368)
312 3pvs_A Replication-associated 77.9 1.2 4.2E-05 44.6 3.2 35 76-110 40-74 (447)
313 2i3b_A HCR-ntpase, human cance 77.8 1.4 4.9E-05 38.6 3.3 24 91-114 6-29 (189)
314 1qvr_A CLPB protein; coiled co 77.4 1.4 4.9E-05 47.8 3.8 38 87-124 589-626 (854)
315 2r62_A Cell division protease 77.4 0.88 3E-05 41.6 1.9 31 89-122 47-77 (268)
316 2c9o_A RUVB-like 1; hexameric 77.4 1.3 4.5E-05 44.3 3.3 22 89-110 66-87 (456)
317 3co5_A Putative two-component 77.4 0.26 9E-06 40.9 -1.6 20 90-109 31-50 (143)
318 2ocp_A DGK, deoxyguanosine kin 77.3 1.2 4.2E-05 40.1 2.8 24 87-110 3-26 (241)
319 3hdt_A Putative kinase; struct 77.2 1.6 5.6E-05 39.3 3.6 34 86-124 14-47 (223)
320 2qen_A Walker-type ATPase; unk 77.1 1.6 5.5E-05 41.0 3.7 42 75-123 22-63 (350)
321 4b4t_K 26S protease regulatory 76.7 2 6.8E-05 42.8 4.3 34 85-122 206-239 (428)
322 1q3t_A Cytidylate kinase; nucl 76.5 1.8 6.2E-05 38.8 3.7 31 88-123 18-48 (236)
323 3nwj_A ATSK2; P loop, shikimat 76.5 1.4 4.8E-05 40.5 3.0 31 88-123 50-80 (250)
324 1tf7_A KAIC; homohexamer, hexa 76.2 3.4 0.00012 42.0 6.1 51 73-124 24-78 (525)
325 4b4t_M 26S protease regulatory 76.2 2.3 7.9E-05 42.4 4.6 34 85-122 215-248 (434)
326 1ye8_A Protein THEP1, hypothet 76.1 1.9 6.5E-05 37.3 3.6 21 90-110 4-24 (178)
327 4e22_A Cytidylate kinase; P-lo 76.1 1.5 5.3E-05 40.0 3.1 23 88-110 29-51 (252)
328 1jr3_A DNA polymerase III subu 76.1 1.7 5.8E-05 41.5 3.6 24 88-111 40-63 (373)
329 2zan_A Vacuolar protein sortin 75.7 1.7 5.8E-05 43.3 3.6 32 89-122 170-201 (444)
330 4ehx_A Tetraacyldisaccharide 4 75.6 3.1 0.0001 39.6 5.2 35 86-122 37-72 (315)
331 3b6e_A Interferon-induced heli 75.3 2.2 7.7E-05 37.0 3.9 32 89-120 51-88 (216)
332 1ixz_A ATP-dependent metallopr 75.2 1.5 5.1E-05 39.7 2.8 22 89-110 52-73 (254)
333 3fdi_A Uncharacterized protein 74.9 1.5 5E-05 38.8 2.5 32 87-123 7-38 (201)
334 1s96_A Guanylate kinase, GMP k 74.6 1.8 6E-05 38.9 3.1 23 88-110 18-40 (219)
335 1r6b_X CLPA protein; AAA+, N-t 74.5 2.6 8.8E-05 44.9 4.8 37 77-113 198-234 (758)
336 1g41_A Heat shock protein HSLU 74.3 2.5 8.4E-05 42.3 4.3 30 90-122 54-83 (444)
337 4b4t_L 26S protease subunit RP 74.2 2.8 9.5E-05 41.9 4.6 34 85-122 215-248 (437)
338 3un1_A Probable oxidoreductase 74.0 2.7 9.1E-05 38.4 4.2 44 77-125 20-63 (260)
339 3vfd_A Spastin; ATPase, microt 73.8 2.5 8.5E-05 41.1 4.2 33 88-123 150-182 (389)
340 4b4t_J 26S protease regulatory 73.7 2.7 9.4E-05 41.4 4.4 34 85-122 182-215 (405)
341 1lvg_A Guanylate kinase, GMP k 73.4 1.8 6.2E-05 37.8 2.8 23 88-110 6-28 (198)
342 2dyk_A GTP-binding protein; GT 73.2 2.4 8.2E-05 34.6 3.4 40 314-354 81-120 (161)
343 3tmk_A Thymidylate kinase; pho 73.0 2.3 7.7E-05 38.2 3.3 32 87-121 6-37 (216)
344 1r6b_X CLPA protein; AAA+, N-t 72.8 3.4 0.00011 44.0 5.2 44 88-134 490-536 (758)
345 2x8a_A Nuclear valosin-contain 72.6 1.9 6.5E-05 40.0 2.9 31 89-122 47-77 (274)
346 1sxj_E Activator 1 40 kDa subu 72.6 1.9 6.4E-05 41.0 2.9 23 89-111 39-61 (354)
347 3ijr_A Oxidoreductase, short c 72.3 5.4 0.00019 36.9 6.0 35 85-124 47-81 (291)
348 3sfz_A APAF-1, apoptotic pepti 72.3 2.3 7.9E-05 47.4 3.9 50 75-124 134-189 (1249)
349 3m6a_A ATP-dependent protease 72.2 3.3 0.00011 42.4 4.8 33 88-123 110-142 (543)
350 2vp4_A Deoxynucleoside kinase; 72.2 2.3 7.8E-05 38.1 3.2 33 87-123 21-53 (230)
351 1sky_E F1-ATPase, F1-ATP synth 72.1 4.4 0.00015 40.8 5.5 42 71-113 136-178 (473)
352 2gno_A DNA polymerase III, gam 71.8 4.9 0.00017 37.9 5.6 35 76-110 8-42 (305)
353 3gem_A Short chain dehydrogena 71.6 2.7 9.4E-05 38.4 3.7 36 84-124 26-61 (260)
354 1iy2_A ATP-dependent metallopr 71.5 2.1 7E-05 39.5 2.8 22 89-110 76-97 (278)
355 2v9p_A Replication protein E1; 71.5 3.5 0.00012 39.0 4.5 26 84-110 125-150 (305)
356 1rif_A DAR protein, DNA helica 70.7 3.5 0.00012 37.9 4.2 31 90-120 132-163 (282)
357 4gp7_A Metallophosphoesterase; 70.5 2 7E-05 36.5 2.4 18 88-105 11-28 (171)
358 3lfu_A DNA helicase II; SF1 he 70.4 2.9 9.9E-05 43.4 3.9 33 91-123 27-63 (647)
359 1knx_A Probable HPR(Ser) kinas 70.3 2.1 7.1E-05 40.8 2.5 25 88-116 149-173 (312)
360 4i1u_A Dephospho-COA kinase; s 70.3 2.7 9.3E-05 37.6 3.2 31 86-123 10-40 (210)
361 1a5t_A Delta prime, HOLB; zinc 69.9 2.9 0.0001 39.8 3.6 25 88-112 26-50 (334)
362 3kta_A Chromosome segregation 69.9 2.4 8.2E-05 36.0 2.7 24 88-111 28-51 (182)
363 1znw_A Guanylate kinase, GMP k 69.7 2.7 9.3E-05 36.8 3.1 23 88-110 22-44 (207)
364 4b4t_I 26S protease regulatory 69.6 4.4 0.00015 40.3 4.8 34 85-122 216-249 (437)
365 1p5z_B DCK, deoxycytidine kina 69.3 1.1 3.8E-05 41.0 0.4 24 87-110 25-48 (263)
366 1jbw_A Folylpolyglutamate synt 69.3 5.6 0.00019 39.3 5.6 35 85-122 39-73 (428)
367 1g8p_A Magnesium-chelatase 38 69.1 1.7 5.8E-05 41.1 1.7 23 89-111 48-70 (350)
368 2g0t_A Conserved hypothetical 69.0 6.6 0.00023 37.9 5.8 38 85-122 169-206 (350)
369 3guy_A Short-chain dehydrogena 68.8 3.7 0.00013 36.4 3.8 34 85-123 1-34 (230)
370 3orf_A Dihydropteridine reduct 68.6 4.3 0.00015 36.6 4.3 36 85-125 22-57 (251)
371 1dek_A Deoxynucleoside monopho 68.6 3.2 0.00011 37.9 3.3 27 88-117 3-29 (241)
372 3lnc_A Guanylate kinase, GMP k 68.6 2 6.7E-05 38.4 1.9 23 88-110 29-52 (231)
373 3ged_A Short-chain dehydrogena 68.3 3.9 0.00013 37.4 3.9 33 86-123 3-35 (247)
374 4b4t_H 26S protease regulatory 68.0 3.1 0.00011 41.8 3.4 35 84-122 242-276 (467)
375 1e2k_A Thymidine kinase; trans 67.9 3.2 0.00011 39.8 3.3 28 87-114 5-32 (331)
376 3gmt_A Adenylate kinase; ssgci 67.7 4.1 0.00014 36.9 3.8 23 87-110 10-32 (230)
377 3grp_A 3-oxoacyl-(acyl carrier 67.7 3.3 0.00011 37.9 3.3 35 84-123 26-60 (266)
378 2fz4_A DNA repair protein RAD2 67.6 3.7 0.00013 37.0 3.6 30 89-121 111-140 (237)
379 3l6e_A Oxidoreductase, short-c 67.5 4.2 0.00014 36.4 3.9 34 85-123 3-36 (235)
380 1of1_A Thymidine kinase; trans 67.5 3.9 0.00013 40.0 3.8 29 86-114 49-77 (376)
381 3v8b_A Putative dehydrogenase, 67.3 4.2 0.00014 37.6 4.0 39 80-123 23-61 (283)
382 1fjh_A 3alpha-hydroxysteroid d 67.1 4.6 0.00016 36.2 4.1 35 85-124 1-35 (257)
383 3hu3_A Transitional endoplasmi 67.0 3.1 0.0001 42.2 3.2 31 89-122 241-271 (489)
384 3p19_A BFPVVD8, putative blue 66.9 5 0.00017 36.7 4.4 34 85-123 16-49 (266)
385 2zej_A Dardarin, leucine-rich 66.8 2.9 9.8E-05 35.6 2.5 15 93-107 9-23 (184)
386 1z6g_A Guanylate kinase; struc 66.5 2.8 9.6E-05 37.2 2.5 22 89-110 26-47 (218)
387 1svm_A Large T antigen; AAA+ f 66.0 4 0.00014 39.8 3.7 25 86-110 169-193 (377)
388 3uxy_A Short-chain dehydrogena 65.9 3.7 0.00013 37.6 3.3 36 84-124 27-62 (266)
389 3k31_A Enoyl-(acyl-carrier-pro 65.3 4.5 0.00015 37.6 3.8 35 84-123 29-65 (296)
390 3tzq_B Short-chain type dehydr 65.2 5.6 0.00019 36.4 4.4 35 85-124 11-45 (271)
391 3vtz_A Glucose 1-dehydrogenase 65.2 4.3 0.00015 37.1 3.6 37 84-125 13-49 (269)
392 3ppi_A 3-hydroxyacyl-COA dehyd 65.1 4.5 0.00015 37.0 3.7 35 84-123 29-63 (281)
393 3ak4_A NADH-dependent quinucli 65.1 4.9 0.00017 36.4 3.9 36 84-124 11-46 (263)
394 1svi_A GTP-binding protein YSX 65.0 4.3 0.00015 34.5 3.3 41 314-355 107-147 (195)
395 3gvc_A Oxidoreductase, probabl 65.0 4.5 0.00015 37.3 3.7 35 84-123 28-62 (277)
396 1o5z_A Folylpolyglutamate synt 64.8 7.1 0.00024 38.8 5.3 35 85-122 52-86 (442)
397 3rwb_A TPLDH, pyridoxal 4-dehy 64.8 4.9 0.00017 36.2 3.8 34 85-123 6-39 (247)
398 4e6p_A Probable sorbitol dehyd 64.8 5.2 0.00018 36.2 4.0 34 85-123 8-41 (259)
399 3sx2_A Putative 3-ketoacyl-(ac 64.6 5.2 0.00018 36.5 4.0 35 85-124 13-47 (278)
400 3f1l_A Uncharacterized oxidore 64.4 5.4 0.00018 36.0 4.0 34 85-123 12-45 (252)
401 2ce7_A Cell division protein F 64.2 6.3 0.00021 39.7 4.8 31 89-122 52-82 (476)
402 3i1j_A Oxidoreductase, short c 64.2 4.5 0.00015 36.1 3.4 34 85-123 14-47 (247)
403 1u0j_A DNA replication protein 64.2 5.4 0.00018 37.0 4.0 34 77-110 93-128 (267)
404 1dhr_A Dihydropteridine reduct 64.1 5.6 0.00019 35.5 4.1 36 85-125 7-42 (241)
405 3pxx_A Carveol dehydrogenase; 64.0 5.4 0.00018 36.5 4.0 35 85-124 10-44 (287)
406 3nyw_A Putative oxidoreductase 64.0 5.2 0.00018 36.1 3.9 35 84-123 6-40 (250)
407 3h7a_A Short chain dehydrogena 64.0 5.5 0.00019 36.0 4.0 36 84-124 6-41 (252)
408 2wsb_A Galactitol dehydrogenas 64.0 5.6 0.00019 35.5 4.1 35 84-123 10-44 (254)
409 3qiv_A Short-chain dehydrogena 63.8 5.6 0.00019 35.7 4.0 34 85-123 9-42 (253)
410 2lkc_A Translation initiation 63.8 5.6 0.00019 33.0 3.8 41 314-355 80-120 (178)
411 4eso_A Putative oxidoreductase 63.6 5.7 0.00019 36.0 4.0 34 85-123 8-41 (255)
412 2ekp_A 2-deoxy-D-gluconate 3-d 63.5 5.7 0.00019 35.4 4.0 35 86-125 3-37 (239)
413 2yv5_A YJEQ protein; hydrolase 63.5 4.3 0.00015 38.1 3.3 31 77-107 156-186 (302)
414 2b6h_A ADP-ribosylation factor 63.4 4.9 0.00017 34.4 3.4 41 314-355 98-143 (192)
415 2ce2_X GTPase HRAS; signaling 63.4 3.6 0.00012 33.4 2.5 39 315-354 77-120 (166)
416 1htw_A HI0065; nucleotide-bind 63.3 4.5 0.00015 34.2 3.1 23 88-110 35-57 (158)
417 2cbz_A Multidrug resistance-as 63.3 4.4 0.00015 36.6 3.2 24 86-110 32-55 (237)
418 1ooe_A Dihydropteridine reduct 63.3 5.5 0.00019 35.4 3.8 36 85-125 3-38 (236)
419 3tpc_A Short chain alcohol deh 63.2 6.6 0.00022 35.4 4.4 36 84-124 6-41 (257)
420 3uf0_A Short-chain dehydrogena 63.2 5.1 0.00017 36.8 3.7 33 84-121 30-62 (273)
421 3op4_A 3-oxoacyl-[acyl-carrier 63.2 4.2 0.00014 36.7 3.1 35 84-123 8-42 (248)
422 4b79_A PA4098, probable short- 63.1 6.5 0.00022 35.8 4.3 35 85-124 11-45 (242)
423 4imr_A 3-oxoacyl-(acyl-carrier 63.1 6.3 0.00022 36.2 4.3 40 81-125 29-68 (275)
424 4dqx_A Probable oxidoreductase 62.9 5.7 0.0002 36.5 4.0 35 84-123 26-60 (277)
425 2l8b_A Protein TRAI, DNA helic 62.8 7.2 0.00025 34.1 4.2 40 85-124 50-90 (189)
426 2wji_A Ferrous iron transport 62.8 5.3 0.00018 33.1 3.4 18 90-107 7-24 (165)
427 3l77_A Short-chain alcohol deh 62.8 6.1 0.00021 35.0 4.0 34 85-123 2-35 (235)
428 4fc7_A Peroxisomal 2,4-dienoyl 62.7 11 0.00038 34.4 5.9 34 85-123 27-60 (277)
429 1ksh_A ARF-like protein 2; sma 62.7 5.1 0.00017 33.7 3.4 41 314-355 87-132 (186)
430 3t7c_A Carveol dehydrogenase; 62.7 5.8 0.0002 36.9 4.0 36 85-125 28-63 (299)
431 3tif_A Uncharacterized ABC tra 62.6 4.6 0.00016 36.4 3.2 24 86-110 32-55 (235)
432 3nrs_A Dihydrofolate:folylpoly 62.5 4.8 0.00017 39.9 3.6 35 85-122 52-86 (437)
433 2dtx_A Glucose 1-dehydrogenase 62.4 7 0.00024 35.6 4.4 36 85-125 8-43 (264)
434 3svt_A Short-chain type dehydr 62.4 6 0.00021 36.3 4.0 36 84-124 10-45 (281)
435 3con_A GTPase NRAS; structural 62.4 4.3 0.00015 34.3 2.8 20 88-108 24-43 (190)
436 2fwm_X 2,3-dihydro-2,3-dihydro 62.3 6.8 0.00023 35.2 4.3 36 85-125 7-42 (250)
437 2ae2_A Protein (tropinone redu 62.0 6.3 0.00022 35.6 4.0 34 85-123 9-42 (260)
438 2ew8_A (S)-1-phenylethanol deh 61.9 6.6 0.00022 35.3 4.1 35 85-124 7-41 (249)
439 2d1y_A Hypothetical protein TT 61.8 6.9 0.00024 35.3 4.3 36 85-125 6-41 (256)
440 1zmt_A Haloalcohol dehalogenas 61.7 4.5 0.00015 36.5 3.0 35 85-124 1-35 (254)
441 3dii_A Short-chain dehydrogena 61.7 6.2 0.00021 35.5 3.9 33 86-123 3-35 (247)
442 1f2t_A RAD50 ABC-ATPase; DNA d 61.6 6.1 0.00021 32.8 3.6 24 88-111 25-48 (149)
443 3pk0_A Short-chain dehydrogena 61.6 5.4 0.00018 36.3 3.5 36 84-124 9-44 (262)
444 3lyl_A 3-oxoacyl-(acyl-carrier 61.5 5.3 0.00018 35.7 3.4 34 85-123 5-38 (247)
445 3r1i_A Short-chain type dehydr 61.5 7.4 0.00025 35.7 4.4 37 82-123 29-65 (276)
446 2atv_A RERG, RAS-like estrogen 61.4 5.8 0.0002 33.8 3.5 20 88-108 31-50 (196)
447 2d2e_A SUFC protein; ABC-ATPas 61.2 5.7 0.0002 36.1 3.6 23 86-109 30-52 (250)
448 1zem_A Xylitol dehydrogenase; 61.2 6.6 0.00023 35.6 4.0 34 85-123 7-40 (262)
449 3rih_A Short chain dehydrogena 61.2 5.3 0.00018 37.2 3.4 36 84-124 40-75 (293)
450 3r3s_A Oxidoreductase; structu 61.1 12 0.00042 34.5 6.0 35 84-123 48-82 (294)
451 3gdg_A Probable NADP-dependent 61.0 8.8 0.0003 34.6 4.8 41 80-125 15-57 (267)
452 2zu0_C Probable ATP-dependent 61.0 5.9 0.0002 36.5 3.7 23 86-109 47-69 (267)
453 1zcb_A G alpha I/13; GTP-bindi 60.9 5.3 0.00018 38.7 3.5 22 86-108 34-55 (362)
454 1b0u_A Histidine permease; ABC 60.7 5.1 0.00017 36.8 3.2 25 86-111 33-57 (262)
455 1mv5_A LMRA, multidrug resista 60.7 5.1 0.00017 36.3 3.1 33 86-119 29-61 (243)
456 4egf_A L-xylulose reductase; s 60.6 6.3 0.00021 35.9 3.8 36 83-123 18-53 (266)
457 2dkn_A 3-alpha-hydroxysteroid 60.5 7 0.00024 34.7 4.0 35 85-124 1-35 (255)
458 3ucx_A Short chain dehydrogena 60.5 7.9 0.00027 35.1 4.5 34 85-123 11-44 (264)
459 2cjw_A GTP-binding protein GEM 60.5 5.3 0.00018 34.3 3.1 15 93-107 13-27 (192)
460 4ibo_A Gluconate dehydrogenase 60.4 5.1 0.00017 36.8 3.1 36 83-123 24-59 (271)
461 3k1j_A LON protease, ATP-depen 60.4 3.8 0.00013 42.5 2.5 37 88-124 62-98 (604)
462 1lw7_A Transcriptional regulat 60.4 5.2 0.00018 38.5 3.3 24 86-110 171-194 (365)
463 1e8c_A UDP-N-acetylmuramoylala 60.4 10 0.00035 38.2 5.6 35 85-122 108-142 (498)
464 1wb1_A Translation elongation 60.3 53 0.0018 32.8 10.9 40 314-354 98-137 (482)
465 2dhr_A FTSH; AAA+ protein, hex 60.3 7.1 0.00024 39.6 4.4 31 89-122 67-97 (499)
466 3o26_A Salutaridine reductase; 60.2 5.5 0.00019 36.7 3.3 35 85-124 12-46 (311)
467 1osn_A Thymidine kinase, VZV-T 60.1 2.7 9.4E-05 40.5 1.2 37 86-124 12-49 (341)
468 3uve_A Carveol dehydrogenase ( 60.1 7 0.00024 35.9 4.0 35 85-124 11-45 (286)
469 1hdc_A 3-alpha, 20 beta-hydrox 59.9 7.2 0.00024 35.2 4.0 35 85-124 5-39 (254)
470 3l0o_A Transcription terminati 59.9 8.5 0.00029 37.9 4.7 45 71-116 160-205 (427)
471 1upt_A ARL1, ADP-ribosylation 59.9 4.8 0.00016 33.1 2.6 41 314-355 76-121 (171)
472 1w78_A FOLC bifunctional prote 59.9 5.8 0.0002 39.0 3.6 35 85-122 49-83 (422)
473 1z2a_A RAS-related protein RAB 59.8 5.2 0.00018 32.7 2.8 40 314-354 79-121 (168)
474 3e03_A Short chain dehydrogena 59.8 8.4 0.00029 35.2 4.5 36 84-124 5-40 (274)
475 2o23_A HADH2 protein; HSD17B10 59.6 8.1 0.00028 34.7 4.3 35 85-124 12-46 (265)
476 3vr4_D V-type sodium ATPase su 59.5 6.8 0.00023 39.3 4.0 40 70-110 135-175 (465)
477 3v2g_A 3-oxoacyl-[acyl-carrier 59.5 7.2 0.00025 35.7 4.0 35 84-123 30-64 (271)
478 2olj_A Amino acid ABC transpor 59.4 5.5 0.00019 36.7 3.2 24 86-110 51-74 (263)
479 2pd4_A Enoyl-[acyl-carrier-pro 59.4 7.9 0.00027 35.3 4.2 35 85-124 6-42 (275)
480 2pze_A Cystic fibrosis transme 59.3 5.5 0.00019 35.8 3.0 24 86-110 35-58 (229)
481 1uay_A Type II 3-hydroxyacyl-C 59.3 7.2 0.00025 34.4 3.9 35 86-125 3-37 (242)
482 3oiy_A Reverse gyrase helicase 59.2 7.7 0.00026 37.5 4.4 33 89-121 39-71 (414)
483 2pd6_A Estradiol 17-beta-dehyd 59.2 7.4 0.00025 34.9 4.0 35 85-124 7-41 (264)
484 1yde_A Retinal dehydrogenase/r 59.2 7.5 0.00026 35.5 4.0 35 85-124 9-43 (270)
485 2ck3_D ATP synthase subunit be 59.1 11 0.00038 37.9 5.5 42 71-113 138-180 (482)
486 1iy8_A Levodione reductase; ox 59.1 7.5 0.00026 35.3 4.0 34 85-123 13-46 (267)
487 3ai3_A NADPH-sorbose reductase 59.1 7.6 0.00026 35.1 4.0 34 85-123 7-40 (263)
488 3tr5_A RF-3, peptide chain rel 59.1 30 0.001 35.1 8.9 42 313-355 106-147 (528)
489 2qq5_A DHRS1, dehydrogenase/re 59.1 6.3 0.00021 35.6 3.4 34 85-123 5-38 (260)
490 1p6x_A Thymidine kinase; P-loo 59.0 5 0.00017 38.5 2.9 37 87-125 8-44 (334)
491 2bgk_A Rhizome secoisolaricire 59.0 7.5 0.00026 35.2 4.0 34 85-123 16-49 (278)
492 4dyv_A Short-chain dehydrogena 59.0 5.7 0.00019 36.5 3.2 35 84-123 27-61 (272)
493 2ghi_A Transport protein; mult 58.9 5.8 0.0002 36.4 3.2 24 86-110 47-70 (260)
494 1ae1_A Tropinone reductase-I; 58.9 7.6 0.00026 35.4 4.0 35 85-124 21-55 (273)
495 1o5i_A 3-oxoacyl-(acyl carrier 58.8 7.8 0.00027 34.8 4.0 35 85-124 19-53 (249)
496 1hv8_A Putative ATP-dependent 58.8 6.9 0.00023 36.7 3.8 33 89-121 47-81 (367)
497 3eag_A UDP-N-acetylmuramate:L- 58.7 13 0.00044 35.1 5.8 33 84-119 107-139 (326)
498 1moz_A ARL1, ADP-ribosylation 58.7 5.1 0.00017 33.5 2.6 40 314-354 87-131 (183)
499 1vl8_A Gluconate 5-dehydrogena 58.7 7.6 0.00026 35.4 4.0 34 85-123 21-54 (267)
500 1ji0_A ABC transporter; ATP bi 58.7 5.7 0.00019 35.9 3.1 24 86-110 33-56 (240)
No 1
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=100.00 E-value=4.5e-51 Score=402.13 Aligned_cols=314 Identities=33% Similarity=0.582 Sum_probs=227.5
Q ss_pred cchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCcccc
Q 043873 75 AGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFAL 154 (413)
Q Consensus 75 ~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~ 154 (413)
+.++.++++.+++|+|+|+||||||||+|+|||..+|+.|+||++||+||+++++++|+.+.. ..+..+.+..+ +...
T Consensus 5 ~~l~~~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~~l~~~l~~~~~-~~~~~v~~~~~-L~~~ 82 (334)
T 3iqw_A 5 PTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFG-KEARLVEGFDN-LYAM 82 (334)
T ss_dssp SSSHHHHHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCHHHHHHTSCCC-SSCEECTTCSS-EEEE
T ss_pred ccHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCCChhHHhccccC-CCceeecCCCC-ceee
Confidence 355667777778899999999999999999999999999999999999999999999998754 33455554455 8888
Q ss_pred ccChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccE
Q 043873 155 EINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTR 234 (413)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~ 234 (413)
++++....+++........ .. ...+++... + +....||++|.+.+.++.+++++ .+|||
T Consensus 83 ~id~~~~~~~~~~~~~~~~------~~--~~~~l~~~~---------~-~~~~~Pg~~e~~~~~~~~~~~~~---~~yD~ 141 (334)
T 3iqw_A 83 EIDPNGSMQDLLAGQTGDG------DA--GMGGVGVMQ---------D-LAYAIPGIDEAMSFAEVLKQVNS---LSYET 141 (334)
T ss_dssp ECCC--------------------------------------------------CCHHHHHHHHHHHHHHHT---SSCSE
T ss_pred ecCHHHHHHHHHHHhhccc------cc--ccccchhhH---------H-hhcCCCCHHHHHHHHHHHHHHHh---CCCCE
Confidence 9998887766653322110 00 000111111 1 11246999999999999999863 56899
Q ss_pred EEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCc--ccchhHHHHHHHHHHHHHHHHHHHhcCCC
Q 043873 235 IVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKE--KKQQDVASDKVEQLRERMAKVRDLFRDPD 312 (413)
Q Consensus 235 VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~d~~~~~l~~l~~~~~~~~~~l~d~~ 312 (413)
|||||||++|++++|++|+.+.+|+++++++.+++....+.+...+|.. ....+++.+.++.++++++++++.|+||+
T Consensus 142 VIiDtpPtg~tLrlL~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~ 221 (334)
T 3iqw_A 142 IVFDTAPTGHTLRFLQFPTVLEKALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDER 221 (334)
T ss_dssp EEEECCCHHHHHHHHTHHHHC-----------------------------------CCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999999999888777777766642 12345788899999999999999999999
Q ss_pred CceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEeccc-CCCCCchHHHHHHHHHHHHHHHHhhcCCCCCC-CceEE
Q 043873 313 ATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVL-PPSASDCKFCAMKRKDQMRVLETIMSDPQLAN-LRLVQ 390 (413)
Q Consensus 313 ~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~-~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~-~~~~~ 390 (413)
.|++++|++|+.+++.|++|+++.|+++|+++.|+|+||++ |+.+.+|++|+.|.+.|.++|++|++ .|.+ ++++.
T Consensus 222 ~t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~--~~~~~~~~~~ 299 (334)
T 3iqw_A 222 LTTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEE--LYDEEFNVVK 299 (334)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHH--HHTTTSEEEE
T ss_pred CeeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHH--hccCCCCEEE
Confidence 99999999999999999999999999999999999999999 55566899999999999999999998 4677 99999
Q ss_pred ccCCCCCCCCHHHHHHHHHhhhC
Q 043873 391 APLVDVEIRGVPALKFMGDMIWK 413 (413)
Q Consensus 391 ~p~~~~e~~g~~aL~~l~~~~~~ 413 (413)
+|+++.||+|+++|+.|++.+|+
T Consensus 300 ~pl~~~e~~G~~~L~~~~~~l~~ 322 (334)
T 3iqw_A 300 MPLLVEEVRGKERLEKFSEMLIK 322 (334)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHS
T ss_pred ecCCCCCCCCHHHHHHHHHHHcC
Confidence 99999999999999999999984
No 2
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=100.00 E-value=7.9e-50 Score=395.12 Aligned_cols=312 Identities=32% Similarity=0.532 Sum_probs=192.6
Q ss_pred cchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHH--HcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCcc
Q 043873 75 AGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFA--NHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLF 152 (413)
Q Consensus 75 ~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la--~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~ 152 (413)
+.++.+++...++|+|+|+||||||||+|+|||..+| +.|+||+|||+||+++++++||.+.. ..+..+.+..+ ++
T Consensus 7 ~~L~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~~~~~~~~-~~~~~v~~~~~-L~ 84 (348)
T 3io3_A 7 PTLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFCQKFG-KDARKVEGLPN-LS 84 (348)
T ss_dssp SSSHHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHHHHTSCCC-SSCEEETTEEE-EE
T ss_pred hhHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHHHhccccC-CCceeccCCCC-ce
Confidence 4567778887778999999999999999999999999 89999999999999999999998764 34556654455 88
Q ss_pred ccccChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhcc---
Q 043873 153 ALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQY--- 229 (413)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~--- 229 (413)
..++++....+++.+....... . ...++..+.. + +....||++|.+.+.++.+.+.+.+|
T Consensus 85 ~~~id~~~~~~~~~~~~~~~~~---~-----~~~~l~~~~~--------~-~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~ 147 (348)
T 3io3_A 85 CMEIDPEAAMSDLQQQASQYNN---D-----PNDPLKSMMS--------D-MTGSIPGIDEALSFMEVLKHIKNQKVLEG 147 (348)
T ss_dssp EEECCC--------------------------------------------------------------------------
T ss_pred EEeeCHHHHHHHHHHHHHhhcc---c-----ccccHhHHhH--------H-hhcCCCCHHHHHHHHHHHHHHHhcccccc
Confidence 8999998877776654322110 0 0001111110 1 11245999999999999998876422
Q ss_pred ------CCccEEEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHH
Q 043873 230 ------NMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAK 303 (413)
Q Consensus 230 ------~~yD~VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~ 303 (413)
+.||||||||||++|++++|++|+.+.+|+++++++..++.... .+..++| .|++++.++.+++++++
T Consensus 148 ~~~~~~~~yD~VIiDtpPtg~tLrlL~lP~~~~~~l~~~~~~~~~~~p~~-~~~~~~~-----~~~~~~~l~~~~~~~~~ 221 (348)
T 3io3_A 148 EDNSNAISYKTIIFDTAPTGHTLRFLQLPSTLEKLLSKFKDLSGKLGPML-SMMGGGQ-----QQDIFEKLNEVQKNVSE 221 (348)
T ss_dssp --------CCEEEEECSSHHHHHHHTC---------------------------------------------------CH
T ss_pred ccccccCCCCEEEEcCCCchHHHHHHhhHHHHHHHHHHHHHHHHhhhHHH-HhcccCc-----hHHHHHHHHHHHHHHHH
Confidence 27999999999999999999999999999999999888775544 3333333 35888999999999999
Q ss_pred HHHHhcCCCCceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCCC-C-CchHHHHHHHHHHHHHHHHhhcCC
Q 043873 304 VRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPS-A-SDCKFCAMKRKDQMRVLETIMSDP 381 (413)
Q Consensus 304 ~~~~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~-~-~~~~~~~~~~~~q~~~l~~i~~d~ 381 (413)
+++.|+||+.|++++|++|+.+++.+++|+++.|+++|+++.|+|+||+++.. + ..|++|+.+.+.|.+||++|++
T Consensus 222 ~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~-- 299 (348)
T 3io3_A 222 VNEQFTNPELTTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGE-- 299 (348)
T ss_dssp HHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHhCcCceEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHH--
Confidence 99999999999999999999999999999999999999999999999999976 3 4799999999999999999998
Q ss_pred CCCCCceEEccCCCCCCCCHHHHHHHHHhhhC
Q 043873 382 QLANLRLVQAPLVDVEIRGVPALKFMGDMIWK 413 (413)
Q Consensus 382 ~~~~~~~~~~p~~~~e~~g~~aL~~l~~~~~~ 413 (413)
.|.+++++++|+++.||+|+++|+.|++.||+
T Consensus 300 ~~~~~~~~~~pl~~~e~~G~~~L~~~~~~l~~ 331 (348)
T 3io3_A 300 LYEDYHLVKMPLLGCEIRGVENLKKFSKFLLK 331 (348)
T ss_dssp HTTTSEEEEEECCSSCCCSHHHHHHHHHHHHS
T ss_pred HccCCCEEEecCCCCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999999999984
No 3
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=100.00 E-value=1.1e-47 Score=380.94 Aligned_cols=321 Identities=34% Similarity=0.625 Sum_probs=261.1
Q ss_pred CcccccchHHhh-----cCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeee
Q 043873 70 PRETVAGFDEMV-----AGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPV 144 (413)
Q Consensus 70 ~~~~~~~~~~~~-----~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v 144 (413)
..+.++.++..+ +..+++|+|+|+||||||||+|+|||..+|++|+||++||+|++++++++|+.+.. ..+..+
T Consensus 5 ~~E~~r~lrt~~~~~~~~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~-~~~~~v 83 (349)
T 3ug7_A 5 IKDSINSLRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFG-HEPTKV 83 (349)
T ss_dssp -----CTTHHHHHHHHHSSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTCHHHHHHCSCCC-SSCEEC
T ss_pred HHHHHHHHhhhHHHhhcccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCCCCC-cCcccc
Confidence 345566666544 35789999999999999999999999999999999999999999999999998764 345555
Q ss_pred ccCCCCccccccChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHH
Q 043873 145 EGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFV 224 (413)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l 224 (413)
.+..+ ++..++++....+++........ ...++.+ ..+...+... ..+||..|.+.+.++.+++
T Consensus 84 ~g~~~-l~~~~id~~~~~~~~~~~~~~~~-----~~~l~~~---~~~~~~l~~~-------~~~pg~~e~~~~~~l~~~~ 147 (349)
T 3ug7_A 84 KGYDN-LYVVEIDPQKAMEEYKEKLKAQI-----EENPFLG---EMLEDQLEMA-------ALSPGTDESAAFDVFLKYM 147 (349)
T ss_dssp TTCSS-EEEEECCHHHHHHHHHHHHHHHG-----GGCHHHH---HHHHHHHHHH-------HHSTTHHHHHHHHHHHHHH
T ss_pred ccccc-eeeeccCHHHHHHHHHHHHHHHH-----HHhcccc---hhhHHHHHHh-------ccCCCHHHHHHHHHHHHHH
Confidence 55455 88889999888877664332211 0111111 1111111110 1479999999999999998
Q ss_pred HhhccCCccEEEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhC---Cc-ccchhHHHHHHHHHHHH
Q 043873 225 ESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFG---KE-KKQQDVASDKVEQLRER 300 (413)
Q Consensus 225 ~~~~~~~yD~VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g---~~-~~~~d~~~~~l~~l~~~ 300 (413)
+ ..+||||||||||++|++++|++|+.+.+|++++++++.++....+.+..+++ .. ..+.|++.+.++.++++
T Consensus 148 ~---~~~yD~VIiDtpPt~~tlrlL~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 224 (349)
T 3ug7_A 148 D---SNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKER 224 (349)
T ss_dssp H---CCSCSEEEECSCCCTTGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHH
T ss_pred H---hCCCCEEEECCCCChHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHH
Confidence 6 35689999999999999999999999999999999999998877777665432 21 23457899999999999
Q ss_pred HHHHHHHhcCCCCceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcC
Q 043873 301 MAKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSD 380 (413)
Q Consensus 301 ~~~~~~~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d 380 (413)
+++++++|+|++.|++++|++|+.+++.+++|+++.|++.|+++.|+|+||+++... .|++|+.+.+.|.++++++++
T Consensus 225 ~~~~~~~L~d~~~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~-~~~~~~~~~~~~~~~l~~i~~- 302 (349)
T 3ug7_A 225 IVRARNILSDPERTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDV-QCDFCRARRELQLKRLEMIKE- 302 (349)
T ss_dssp HHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCC-CSHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCCCCceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccccC-CCchHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999999999998743 599999999999999999988
Q ss_pred CCCCCCceEEccCCCCCCCCHHHHHHHHHhhhC
Q 043873 381 PQLANLRLVQAPLVDVEIRGVPALKFMGDMIWK 413 (413)
Q Consensus 381 ~~~~~~~~~~~p~~~~e~~g~~aL~~l~~~~~~ 413 (413)
.+...++..+|+.+.||+|+++|+.+++.||.
T Consensus 303 -~~~~~~l~~iPl~~~e~~g~~~L~~~~~~l~~ 334 (349)
T 3ug7_A 303 -KFGDKVIAYVPLLRTEAKGIETLKQIAKILYG 334 (349)
T ss_dssp -HSTTSEEEEEECCSSCSCSHHHHHHHHHHHC-
T ss_pred -HcCCCcEEEecCCCCCCCCHHHHHHHHHHHcC
Confidence 57789999999999999999999999999874
No 4
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=9.9e-47 Score=370.51 Aligned_cols=305 Identities=37% Similarity=0.661 Sum_probs=250.2
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccccChHHHHHH
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREE 164 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~ 164 (413)
+++|+|+|+||||||||+|+|||..+|++|+||++||+|++++++.+|+.+... .+..+. .+ +...++++.....+
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~l~~~l~~~~~~-~~~~v~--~~-l~~~~~d~~~~~~~ 88 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREIGH-TPTKIT--EN-LYAVEIDPEVAMEE 88 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTSCCCS-SCEEEE--TT-EEEEECCHHHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCCcCHHHHhCCcCCC-CCccCC--CC-ceeeccChHHHHHH
Confidence 479999999999999999999999999999999999999999999999987543 333332 33 78888999988877
Q ss_pred HHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCChh
Q 043873 165 FRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGH 244 (413)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~~ 244 (413)
+......... ..++. ++..+...+. ....+||..|...+.++.++++ ..+||||||||||+++
T Consensus 89 ~~~~~~~~~~-----~~~~~--~~~~~~~~l~-------~~~~~pg~~e~~~~~~~~~~~~---~~~yD~VIiDtpPt~~ 151 (324)
T 3zq6_A 89 YQAKLQEQAA-----MNPGM--GLDMLQDQMD-------MASMSPGIDEAAAFDQFLRYMT---TDEYDIVIFDTAPTGH 151 (324)
T ss_dssp HHHHC-----------------------------------CTTSTTHHHHHHHHHHHHHHH---HCCCSEEEEECCCHHH
T ss_pred HHHHHHHHHH-----hhccc--chhhhHHHHH-------HhccCCChHHHHHHHHHHHHHH---hCCCCEEEECCCCCHH
Confidence 7654432111 11111 1111111111 1235899999999999999886 3568999999999999
Q ss_pred HHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCc--ccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecC
Q 043873 245 TLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKE--KKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIP 322 (413)
Q Consensus 245 ~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~p 322 (413)
++++|++|+.+.+|++++++++++.....+.++.+++.. ....|++.+.+++++++++++++.|+|++.|++++|++|
T Consensus 152 ~l~lL~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p 231 (324)
T 3zq6_A 152 TLRLLSFPEIMDSWVGKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIP 231 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECS
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 999999999999999999999999887776665554211 112368899999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccCCCCCCCCHH
Q 043873 323 TVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDVEIRGVP 402 (413)
Q Consensus 323 e~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~~~~e~~g~~ 402 (413)
+.+++.+++|+++.|++.|+++.|+|+||+++... .|++|+.+.+.|.++++++++ .+...++..+|+++.||+|++
T Consensus 232 ~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~-~~~~~~~~~~~~~~~l~~i~~--~~~~~~~~~iPl~~~e~~g~~ 308 (324)
T 3zq6_A 232 EEMSIYESERAMKALEKYSIHADGVIVNQVLPEES-DCEFCNARRKLQQERLKQIRE--KFSDKVVAEVPLLKKEAKGIE 308 (324)
T ss_dssp SHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSCC-CSHHHHHHHHHHHHHHHHHHH--HTTTSEEEEEECCSSCSCSHH
T ss_pred cccHHHHHHHHHHHHHHCCCCccEEEEcCCccccC-CChHHHHHHHHHHHHHHHHHH--HcCCCcEEEecCCCCCCCCHH
Confidence 99999999999999999999999999999998743 699999999999999999998 577899999999999999999
Q ss_pred HHHHHHHhhhC
Q 043873 403 ALKFMGDMIWK 413 (413)
Q Consensus 403 aL~~l~~~~~~ 413 (413)
+|+.+++.||+
T Consensus 309 ~L~~~~~~l~~ 319 (324)
T 3zq6_A 309 TLEKIAEQLYG 319 (324)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999874
No 5
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-45 Score=360.48 Aligned_cols=309 Identities=33% Similarity=0.598 Sum_probs=249.2
Q ss_pred hHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCcccccc
Q 043873 77 FDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEI 156 (413)
Q Consensus 77 ~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~ 156 (413)
++.+++...++|+|+||||||||||+|+|||..+|++|+||++||+|++++++++|+.+... .+..+.+..+ +...++
T Consensus 10 l~~~~~~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~~~l~~~l~~~~~~-~~~~~~g~~~-l~~~~~ 87 (329)
T 2woo_A 10 LENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTKFGK-DARKVPGFDN-LSAMEI 87 (329)
T ss_dssp THHHHHCTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTTCHHHHHHSSCCCS-SCEECTTCSS-EEEEEC
T ss_pred HHHHhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCcCHHHHhCCcCCC-CCeeccCCCC-eeEEec
Confidence 44455666788999999999999999999999999999999999999999999999986432 2333344344 778888
Q ss_pred ChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEE
Q 043873 157 NPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIV 236 (413)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VI 236 (413)
+++....++...+.. ..+..++. ..+ +.+ ...+||+.|...+.++.+.+++ .+|||||
T Consensus 88 ~~~~~~~~~~~~~~~-----~~l~~~l~----~~l-~~l---------~~~~pg~~e~~~~~~~~~~l~~---~~yD~Vi 145 (329)
T 2woo_A 88 DPNLSIQEMTEQADQ-----QNPNNPLS----GMM-QDL---------AFTIPGIDEALAFAEILKQIKS---MEFDCVI 145 (329)
T ss_dssp CHHHHHHHHHHTC-------------CC----HHH-HHH---------HTTSTTHHHHHHHHHHHHHHHH---TCCSEEE
T ss_pred CHHHHHHHHHHHHhh-----hhHHHHhh----HHH-HHH---------hcCCCCHHHHHHHHHHHHHHHh---CCCCEEE
Confidence 888776665432211 00111110 001 111 1247999999999998888865 5689999
Q ss_pred EcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceE
Q 043873 237 FDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEF 316 (413)
Q Consensus 237 iDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~ 316 (413)
|||||+++++++|++|+.+++|+++++++..++....+.+..++|... +.|++...++.+++.++++++.++|++.|.+
T Consensus 146 iDtpPtg~~l~lL~~p~~~~~~l~~l~~~~~~~~~~~~~l~~~~g~~~-~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~ 224 (329)
T 2woo_A 146 FDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGSIMGVNA-NEQDLFGKMESMRANISEVNKQFKNPDLTTF 224 (329)
T ss_dssp EECCSSSCTTTGGGHHHHHHHHHHHHHTSCSSCHHHHHHHHHHHC------CCTTHHHHHHHHHHHHHHHHHTCTTTEEE
T ss_pred ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CcHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 999999999999999999999999999888877665555555555332 2245678899999999999999999999999
Q ss_pred EEEecCccchHHHHHHHHHHHHhcCCCcceEEEeccc-CCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccCCC
Q 043873 317 VIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVL-PPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVD 395 (413)
Q Consensus 317 vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~-~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~~~ 395 (413)
++|++|+.+++.+++++++.|+++|+++.++|+||+. |. ...|++|+.+.+.|.++++++.+ .+.+.++..+|++.
T Consensus 225 vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~p~-~~~~~~~~~~~~~q~~~l~~i~~--~~~~~~~~~vP~~~ 301 (329)
T 2woo_A 225 VCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDP-NTTCPQCMARRKMQQKYLAQIEE--LYEDFHVVKVPQVP 301 (329)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECCCS-SCCCHHHHHHHHHHHHHHHHHHH--HTTTSEEEEEECCS
T ss_pred EEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcCcc-cccCHHHHHHHHHHHHHHHHHHH--hcCCCCEEEecCCC
Confidence 9999999999999999999999999999999999999 66 55799999999999999999988 57789999999999
Q ss_pred CCCCCHHHHHHHHHhhhC
Q 043873 396 VEIRGVPALKFMGDMIWK 413 (413)
Q Consensus 396 ~e~~g~~aL~~l~~~~~~ 413 (413)
.||+|+++|+.|++.+|+
T Consensus 302 ~e~~g~~~L~~l~~~l~~ 319 (329)
T 2woo_A 302 AEVRGTEALKSFSEMLVK 319 (329)
T ss_dssp SCCCSTTHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 999999999999999874
No 6
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=100.00 E-value=4e-44 Score=355.77 Aligned_cols=316 Identities=34% Similarity=0.576 Sum_probs=239.2
Q ss_pred cchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHH--HcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCcc
Q 043873 75 AGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFA--NHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLF 152 (413)
Q Consensus 75 ~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la--~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~ 152 (413)
+.++.+++...++|+|+||||||||||+|+|||.+|| +.|+||+|||+|++++++.+||.+.. ..+..+.+..+ ++
T Consensus 7 ~~l~~l~~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~~~l~~~lg~~~~-~~~~~v~gl~~-l~ 84 (354)
T 2woj_A 7 PNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKFG-KDARKVTGMNN-LS 84 (354)
T ss_dssp SSCHHHHTCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCCHHHHHTSCCC-SSCEECTTCSS-EE
T ss_pred ccHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHhCCCCC-CCceeecCCCc-eE
Confidence 4567777777789999999999999999999999999 99999999999999999999998764 34555655555 88
Q ss_pred ccccChHHHHHHHHHhhccCC------CCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHh
Q 043873 153 ALEINPEKAREEFRTASQGSG------GSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVES 226 (413)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~ 226 (413)
..+++++...+++........ +.|.+++.++ ......++. ..+||++|...+.++.+.+.+
T Consensus 85 ~~~id~~~~l~~~~~~~~~~~~~~~~~~~g~~l~~l~----~~~~~~el~---------~~~pg~~e~~~l~~l~~~l~~ 151 (354)
T 2woj_A 85 CMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLL----QGGALADLT---------GSIPGIDEALSFMEVMKHIKR 151 (354)
T ss_dssp EEECCHHHHHHHHHTC--------------------C----CSSHHHHHH---------TTSTTHHHHHHHHHHHHHHHH
T ss_pred EEecCHHHHHHHHHHHHHhhcccccccchhhhhhhcc----chhHHHHHh---------cCCCChHHHHHHHHHHHHHhc
Confidence 888999887776654322100 0001233221 111112221 247999999999999998865
Q ss_pred h---ccCCccEEEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHH
Q 043873 227 Q---QYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAK 303 (413)
Q Consensus 227 ~---~~~~yD~VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~ 303 (413)
. .+..||||||||||+++++++|.+|+.+.+|+++++++..++......+..+ + .+++...++.+++++++
T Consensus 152 ~~~~~~~~yD~IIiDtpPtG~tLrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~ 225 (354)
T 2woj_A 152 QEQGEGETFDTVIFDTAPTGHTLRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGA-G-----NVDISGKLNELKANVET 225 (354)
T ss_dssp HHHTSCCSCSEEEEECCCHHHHHHHHTHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHH
T ss_pred ccccccCCCCEEEECCCCchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C-----hHHHHHHHHHHHHHHHH
Confidence 3 1226999999999999999999999999999999998888765543332222 1 12477899999999999
Q ss_pred HHHHhcCCCCceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEeccc-CCCCC--chHHHHHHHHHHHHHHHHhhcC
Q 043873 304 VRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVL-PPSAS--DCKFCAMKRKDQMRVLETIMSD 380 (413)
Q Consensus 304 ~~~~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~-~~~~~--~~~~~~~~~~~q~~~l~~i~~d 380 (413)
+++.|+||..+.+++|++|+.+++.+++|+++.|+++|+++.++|+||+. |.... .|++|+.+.+.|.++|+.+.+
T Consensus 226 ~~~~L~d~~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~~~~~~~~~~~~~~~~~~~~q~~~l~~l~~- 304 (354)
T 2woj_A 226 IRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQIDE- 304 (354)
T ss_dssp HHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCCC------CHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHhcCCCCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCCCcccccccccHHHHHHHHHHHHHHHHHHH-
Confidence 99999999899999999999999999999999999999999999999999 65442 588999999999999999987
Q ss_pred CCCCCCceEEccCCCCCCCCHHHHHHHHHhhhC
Q 043873 381 PQLANLRLVQAPLVDVEIRGVPALKFMGDMIWK 413 (413)
Q Consensus 381 ~~~~~~~~~~~p~~~~e~~g~~aL~~l~~~~~~ 413 (413)
.+.+.++.++|++..+|.|.++|+.+++.+++
T Consensus 305 -~~~~~~v~~~P~~~~~~~g~~~l~~la~~l~~ 336 (354)
T 2woj_A 305 -LYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNK 336 (354)
T ss_dssp -HTTTSEEEEEECCSSCCCHHHHHHHHHHHHHT
T ss_pred -hcCCCCEEEeecCCCCCccHHHHHHHHHHHhc
Confidence 46688999999999999999999999998863
No 7
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=100.00 E-value=2.3e-40 Score=329.65 Aligned_cols=278 Identities=17% Similarity=0.209 Sum_probs=206.5
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccccChHHHHHH
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREE 164 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~ 164 (413)
|++|++++|||||||||+|+|+|..+|++|+||++||+ |+++++++|+.+.. ..+..+. .+ ++..++|++...++
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~~l~~~~~~~~~-~~~~~v~--~~-L~~~eid~~~~~~~ 75 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEPVLPLLLEQTLT-PDPQQIA--PN-LEVVQFQSSVLLER 75 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCSHHHHHHTSCCC-SSCEEEE--TT-EEEEECCHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCCChHHhhCCCCC-CCccccc--cc-ccccccCHHHHHHH
Confidence 35688999999999999999999999999999999999 99999999998754 3344443 34 89999999888777
Q ss_pred HHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCChh
Q 043873 165 FRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGH 244 (413)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~~ 244 (413)
+...... .....+...++... ..+++ ...||.+|.+.+.++.+++++ .+||||||||||++|
T Consensus 76 ~~~~~~~------~~~~~l~~~~~~~~-------~~~el--~~~Pg~~E~~~l~~~~~~~~~---~~yD~VIvDtpPtg~ 137 (374)
T 3igf_A 76 NWEEVKK------LEAQYLRTPIIKEV-------YGQEL--VVLPGMDSALALNAIREYDAS---GKYDTIVYDGTGDAF 137 (374)
T ss_dssp HHHHHHH------HHHHHCSSCSSSSS-------CGGGC--CCCTTHHHHHHHHHHHHHHHT---TCCSEEEEECCCSHH
T ss_pred HHHHHHH------HHHhhccccccccc-------chhhh--ccCCCHHHHHHHHHHHHHHhc---cCCCEEEEeCCCChH
Confidence 6543221 11111111111111 11111 358999999999999998864 458999999999999
Q ss_pred HHhhccchHHHHHHHhHHHHHHHHHh--h-h--hHHHHhhhC---CcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceE
Q 043873 245 TLRLLSLPDFLDASIGKMMKLKKKLA--S-T--TSAFKSVFG---KEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEF 316 (413)
Q Consensus 245 ~l~~L~lp~~l~~~~~~~~~~~~~~~--~-~--~~~~~~~~g---~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~ 316 (413)
++++|++|+.+.+|++++++++++.. + . .+++..+.+ ....+.|++.+.++.+++++++++++|+||+.|.+
T Consensus 138 tLrlL~lP~~l~~~l~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~ 217 (374)
T 3igf_A 138 TLRMLGLPESLSWYVRRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAA 217 (374)
T ss_dssp HHHHHTHHHHHHHHHHHTTSCC-----------------------------------CHHHHHHHHHHHHHHHCTTTEEE
T ss_pred HhhhhhhhHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEE
Confidence 99999999999999999888887741 1 1 222332222 22234578889999999999999999999999999
Q ss_pred EEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccCCCC
Q 043873 317 VIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDV 396 (413)
Q Consensus 317 vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~~~~ 396 (413)
++|++||.+++.|++|+++.|+++|+++.|+|+|| ++ |+++|.+ .|.++++..+|++..
T Consensus 218 vlVt~pe~~sl~ea~r~~~~L~~~gi~v~gvVvN~--~~-----------------~l~~i~~--~F~~~~v~~vpl~~~ 276 (374)
T 3igf_A 218 FLVTTADPLEVVSVRYLWGSAQQIGLTIGGVIQVS--SQ-----------------TEGDLSA--EFTPLSVTVVPDVTK 276 (374)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHTCCEEEEEECC--CS-----------------CCCCCGG--GSTTSCEEECCCCBT
T ss_pred EEEECCCccHHHHHHHHHHHHHHcCCCccEEEEcC--HH-----------------HHHHHHH--hcCCCceEECCCCCh
Confidence 99999999999999999999999999999999999 31 5677877 578999999999999
Q ss_pred CCCCHHHHHHHHHhh
Q 043873 397 EIRGVPALKFMGDMI 411 (413)
Q Consensus 397 e~~g~~aL~~l~~~~ 411 (413)
| +|+.|++.+
T Consensus 277 e-----~l~~l~~~l 286 (374)
T 3igf_A 277 G-----DWQPLIDAL 286 (374)
T ss_dssp T-----BCHHHHHHC
T ss_pred h-----HHHHHHHHh
Confidence 8 777777654
No 8
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=100.00 E-value=9.8e-36 Score=314.44 Aligned_cols=286 Identities=30% Similarity=0.417 Sum_probs=216.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccccChHHHHHH
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREE 164 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~ 164 (413)
+++++|++|||||||||+|+|||..+|++|+||++||+|++++++++|+.+... .+..+.+..+ +...+++++.....
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~~~l~~~l~~~~~~-~~~~v~~~~~-l~~~~~d~~~~~~~ 84 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGN-TIQAIASVPG-LSALEIDPQAAAQQ 84 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHTTSCCCS-SCEECTTSTT-EEEEECCHHHHHHH
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCCcCHHHHhCCcccC-CCceeccchh-hhhccCCHHHHHHH
Confidence 345779999999999999999999999999999999999999999999987543 3445544454 88888898877766
Q ss_pred HHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHH--hhccCCccEEEEcCCCC
Q 043873 165 FRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVE--SQQYNMFTRIVFDTAPT 242 (413)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~--~~~~~~yD~VIiDtpPt 242 (413)
+.+..... ....++.. ........+ ..++..|......+.++++ .. ...||||||||||+
T Consensus 85 ~~~~~~~~-----~~~~lp~~-~~~~~~~~l-----------~~~~~~e~~~~~~~~~ll~~~~l-~~~yD~VIiDt~P~ 146 (589)
T 1ihu_A 85 YRARIVDP-----IKGVLPDD-VVSSINEQL-----------SGACTTEIAAFDEFTGLLTDASL-LTRFDHIIFDTAPT 146 (589)
T ss_dssp HHHHHHGG-----GTTTSCHH-HHHHHHHHT-----------SSHHHHHHHHHHHHHHHHHCTTH-HHHCSEEEESSCCC
T ss_pred HHHHHHHH-----HHHhcchh-hHHHHHHHh-----------cccchHHHHHHHHHHHHHhchhh-cccCCEEEECCCCc
Confidence 65433211 11111111 111111111 1235677777888888886 22 24699999999999
Q ss_pred hhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecC
Q 043873 243 GHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIP 322 (413)
Q Consensus 243 ~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~p 322 (413)
++++++|.+|+.+.+|+++.... ...+....| +...++++.++.+.+.|++.|.+++|++|
T Consensus 147 ~~~lrll~lP~~~~~~l~~~~~~-------~~~l~~~~~------------l~~~~~~~~~~~~~l~d~~~t~vvlV~~~ 207 (589)
T 1ihu_A 147 GHTIRLLQLPGAWSSFIDSNPEG-------ASCLGPMAG------------LEKQREQYAYAVEALSDPKRTRLVLVARL 207 (589)
T ss_dssp HHHHHHHHCGGGGTCCC-------------CCCCGGGGG------------CCSCHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred hhHHHHHHhHHHHHHHHHHhhcc-------ccccchhhh------------hhHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 99999999998877666543110 001111111 22334566778888999988999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCCcceEEEecccCCCC-CchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccCCCCCCCCH
Q 043873 323 TVMAISESSRLHASLRKECIPVQRLIVNQVLPPSA-SDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDVEIRGV 401 (413)
Q Consensus 323 e~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~-~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~~~~e~~g~ 401 (413)
+..++.+++++++.|++.|+++.++|+|++.+... .+|++|+.+.+.|.++++.+++ .|.+.++..+|+++.|+.|.
T Consensus 208 ~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~vPl~~~e~~g~ 285 (589)
T 1ihu_A 208 QKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPA--DLAGLPTDTLFLQPVNMVGV 285 (589)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCGGGGSSCHHHHHHHHHHHHHHHTCCH--HHHTSCEEEEECCSSCCCSH
T ss_pred CccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCccccccCHHHHHHHHHHHHHHHHHHH--hccCCCEEEecCCCCCCCCH
Confidence 99999999999999999999999999999998754 5689999999999999999987 57889999999999999999
Q ss_pred HHHHHHHHhh
Q 043873 402 PALKFMGDMI 411 (413)
Q Consensus 402 ~aL~~l~~~~ 411 (413)
++|+.+++.+
T Consensus 286 ~~l~~~~~~~ 295 (589)
T 1ihu_A 286 SALSRLLSTQ 295 (589)
T ss_dssp HHHHHTTCSC
T ss_pred HHHHHHHhhh
Confidence 9999997654
No 9
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=100.00 E-value=3e-32 Score=287.83 Aligned_cols=269 Identities=27% Similarity=0.429 Sum_probs=186.0
Q ss_pred cchHHhhc---CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCc
Q 043873 75 AGFDEMVA---GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPL 151 (413)
Q Consensus 75 ~~~~~~~~---~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l 151 (413)
+.++.++. ...++++|+++|||+||||+|+|+|..++++|+||++||+||+++++.+|+..... +
T Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~~l~~~l~~~~~~------------l 380 (589)
T 1ihu_A 313 PSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGSLNN------------L 380 (589)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-----------CC------------E
T ss_pred chhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcccHhHHhcccCCC------------c
Confidence 45655555 35678999999999999999999999999999999999999999999999874221 4
Q ss_pred cccccChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCC
Q 043873 152 FALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNM 231 (413)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~ 231 (413)
....+++......+...+..... .++. ........+.+ ..|+..+...+.++.+.+. +.+
T Consensus 381 ~~~~~~~~~~~~~~~~~v~~~~~--~~l~----~~~~~~~~~~~-----------~~p~~~e~~~~~~l~~~~~---~~~ 440 (589)
T 1ihu_A 381 QVSRIDPHEETERYRQHVLETKG--KELD----EAGKRLLEEDL-----------RSPCTEEIAVFQAFSRVIR---EAG 440 (589)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHH--TTCC----HHHHHHHHHHT-----------TSHHHHHHHHHHHHTTTGG---GGG
T ss_pred eeeecchHHHHHHHHHHHHHhhh--ccCC----hhhHHHHHHHh-----------cCCChHHHHHHHHHHHHHh---ccC
Confidence 44556665444444332221100 0010 00111111111 2566677666666666553 345
Q ss_pred ccEEEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCC
Q 043873 232 FTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDP 311 (413)
Q Consensus 232 yD~VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~ 311 (413)
||||||||||+++++++|++|+.+..++.+. ++.. . .+.++...+.|+
T Consensus 441 ~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~-----------------~~~~--------------~-~~~~~~~~l~d~ 488 (589)
T 1ihu_A 441 KRFVVMDTAPTGHTLLLLDATGAYHREIAKK-----------------MGEK--------------G-HFTTPMMLLQDP 488 (589)
T ss_dssp TSEEEESCCCCHHHHHHHHHC--------------------------------------------------CCHHHHHCT
T ss_pred CCEEEEcCCCCccHHHHHHhHHHHHHHHHHh-----------------cccc--------------h-HHHHHHHHhcCC
Confidence 8999999999999999999998764322211 1100 0 122333457888
Q ss_pred CCceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEc
Q 043873 312 DATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQA 391 (413)
Q Consensus 312 ~~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~ 391 (413)
..+.+++|++|+.+++.++.++++.|++.|+++.++|+||+.+..+..|+||+.+.+.|.++|++|.+. | +.++..+
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~-~~~v~~i 565 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQ--H-ASRVALV 565 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTT--T-CSSEEEE
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHh--c-CCcEEEc
Confidence 889999999999999999999999999999999999999999987778999999999999999999984 4 4688999
Q ss_pred cCCCCCCCCHHHHHHHHHh
Q 043873 392 PLVDVEIRGVPALKFMGDM 410 (413)
Q Consensus 392 p~~~~e~~g~~aL~~l~~~ 410 (413)
|++..||+|+++|+.++.+
T Consensus 566 P~~~~e~~g~~~l~~~~~~ 584 (589)
T 1ihu_A 566 PVLASEPTGIDKLKQLAGH 584 (589)
T ss_dssp ECCSSCCCSHHHHHHHHCC
T ss_pred cCCCCCCCCHHHHHHHhcc
Confidence 9999999999999998865
No 10
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.91 E-value=1.8e-24 Score=208.42 Aligned_cols=195 Identities=14% Similarity=0.193 Sum_probs=138.4
Q ss_pred CCCCcccccchHHhhc-----CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhhcccCCCc
Q 043873 67 ISTPRETVAGFDEMVA-----GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFAQDLSGGT 140 (413)
Q Consensus 67 ~~~~~~~~~~~~~~~~-----~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg~~~~~~~ 140 (413)
.+...|+++.++..+. ...++|+|+|+|||+||||+|+|||..+|+.|+||+|||+|++ ++++.+|+.+...+.
T Consensus 69 ~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl 148 (286)
T 3la6_A 69 TDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGL 148 (286)
T ss_dssp TCHHHHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCH
T ss_pred CCHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCH
Confidence 3445678888887663 4578999999999999999999999999999999999999997 789999998654321
Q ss_pred eeeeccCCCCccccccChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHH
Q 043873 141 LVPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKV 220 (413)
Q Consensus 141 ~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l 220 (413)
.. +.....+ +.+.+..... ++++.++.+ ..+|.+.|.+...++
T Consensus 149 ~~--------~l~~~~~-------~~~~i~~~~~--~~l~vl~~g--------------------~~~~~~~ell~~~~l 191 (286)
T 3la6_A 149 SE--------ILIGQGD-------ITTAAKPTSI--AKFDLIPRG--------------------QVPPNPSELLMSERF 191 (286)
T ss_dssp HH--------HHHTSSC-------TTTTCEECSS--TTEEEECCC--------------------SCCSCHHHHHTSHHH
T ss_pred HH--------HccCCCC-------HHHheeccCC--CCEEEEeCC--------------------CCCCCHHHHhchHHH
Confidence 10 1111111 1111111111 233333222 134567777767777
Q ss_pred HHHHHhhccCCccEEEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHH
Q 043873 221 MQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRER 300 (413)
Q Consensus 221 ~~~l~~~~~~~yD~VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~ 300 (413)
.++++... +.||||||||||.....+..
T Consensus 192 ~~ll~~l~-~~yD~VIIDtpp~~~~~da~--------------------------------------------------- 219 (286)
T 3la6_A 192 AELVNWAS-KNYDLVLIDTPPILAVTDAA--------------------------------------------------- 219 (286)
T ss_dssp HHHHHHHH-HHCSEEEEECCCTTTCTHHH---------------------------------------------------
T ss_pred HHHHHHHH-hCCCEEEEcCCCCcchHHHH---------------------------------------------------
Confidence 77777665 46999999999965432111
Q ss_pred HHHHHHHhcCCCCceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCCCC
Q 043873 301 MAKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSA 357 (413)
Q Consensus 301 ~~~~~~~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~ 357 (413)
.+.. ..+.+++|+.++..+..++.++++.|++.|+++.|+|+|++.+...
T Consensus 220 ------~l~~-~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~~ 269 (286)
T 3la6_A 220 ------IVGR-HVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRAS 269 (286)
T ss_dssp ------HHTT-TCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCCC
T ss_pred ------HHHH-HCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccccc
Confidence 0111 1457999999999999999999999999999999999999977543
No 11
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.89 E-value=1.2e-23 Score=201.14 Aligned_cols=194 Identities=16% Similarity=0.183 Sum_probs=134.3
Q ss_pred CCCCcccccchHHhhc-----CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC-CCchhhhhcccCCCc
Q 043873 67 ISTPRETVAGFDEMVA-----GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA-HSLSDSFAQDLSGGT 140 (413)
Q Consensus 67 ~~~~~~~~~~~~~~~~-----~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~-~sls~~lg~~~~~~~ 140 (413)
.+...|+++.++..+. ..+++|+|+|.|||+||||+|+|||..+|+.|+||+|||+|++ ++++.+|+.+...+.
T Consensus 59 ~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl 138 (271)
T 3bfv_A 59 KSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGL 138 (271)
T ss_dssp TSHHHHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSH
T ss_pred CCHHHHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCH
Confidence 3445678888887664 4578999999999999999999999999999999999999987 689999987653321
Q ss_pred eeeeccCCCCccccccChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHH
Q 043873 141 LVPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKV 220 (413)
Q Consensus 141 ~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l 220 (413)
. . +.....+ +.+.+..... ++++.++.+. .+|.+.+.+....+
T Consensus 139 ~-~-------~L~~~~~-------l~~~i~~~~~--~~l~vl~~g~--------------------~~~~~~ell~~~~l 181 (271)
T 3bfv_A 139 S-S-------LLLNWST-------YQDSIISTEI--EDLDVLTSGP--------------------IPPNPSELITSRAF 181 (271)
T ss_dssp H-H-------HHTTSSC-------HHHHEEECSS--TTEEEECCCS--------------------CCSCHHHHHTSHHH
T ss_pred H-H-------HhCCCCC-------HHHcEEeCCC--CCEEEEECCC--------------------CCCCHHHHhChHHH
Confidence 0 0 1111111 1222222211 2333333221 24556666555667
Q ss_pred HHHHHhhccCCccEEEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHH
Q 043873 221 MQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRER 300 (413)
Q Consensus 221 ~~~l~~~~~~~yD~VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~ 300 (413)
.++++..+ +.||||||||||.....+...+ .
T Consensus 182 ~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~l---~--------------------------------------------- 212 (271)
T 3bfv_A 182 ANLYDTLL-MNYNFVIIDTPPVNTVTDAQLF---S--------------------------------------------- 212 (271)
T ss_dssp HHHHHHHH-HHCSEEEEECCCTTTCSHHHHH---H---------------------------------------------
T ss_pred HHHHHHHH-hCCCEEEEeCCCCchHHHHHHH---H---------------------------------------------
Confidence 77776654 4699999999996542211000 0
Q ss_pred HHHHHHHhcCCCCceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCCC
Q 043873 301 MAKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPS 356 (413)
Q Consensus 301 ~~~~~~~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~ 356 (413)
.. .+.+++|+.++..+..++.++++.+++.|+++.|+|+|++.+..
T Consensus 213 ------~~----aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 213 ------KF----TGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK 258 (271)
T ss_dssp ------HH----HCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred ------HH----CCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence 01 24799999999999999999999999999999999999997653
No 12
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.89 E-value=2.8e-23 Score=201.34 Aligned_cols=193 Identities=17% Similarity=0.196 Sum_probs=135.2
Q ss_pred CCCcccccchHHhhc-----CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC-CCCchhhhhcccCCCce
Q 043873 68 STPRETVAGFDEMVA-----GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP-AHSLSDSFAQDLSGGTL 141 (413)
Q Consensus 68 ~~~~~~~~~~~~~~~-----~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp-~~sls~~lg~~~~~~~~ 141 (413)
+...|+++.++..+. ..+++|+|+|.|||+||||+|+|||..||+.|+||+|||+|+ +++++.+|+.+...+..
T Consensus 82 ~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~ 161 (299)
T 3cio_A 82 DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLS 161 (299)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHH
T ss_pred CHHHHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHH
Confidence 344577888877553 457899999999999999999999999999999999999999 58999999876543210
Q ss_pred eeeccCCCCccccccChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHH
Q 043873 142 VPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVM 221 (413)
Q Consensus 142 ~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~ 221 (413)
+ +.....+ +.+.+..... ++++.++++ ..++.+.|.+....+.
T Consensus 162 -~-------~L~~~~~-------l~~~i~~~~~--~~l~vl~~g--------------------~~~~~~~ell~~~~l~ 204 (299)
T 3cio_A 162 -E-------YLAGKDE-------LNKVIQHFGK--GGFDVITRG--------------------QVPPNPSELLMRDRMR 204 (299)
T ss_dssp -H-------HHTTSSC-------HHHHCEEETT--TTEEEECCC--------------------SCCSCHHHHHTSHHHH
T ss_pred -H-------HCcCCCC-------HHHhhhccCC--CCEEEEECC--------------------CCCCCHHHHhCHHHHH
Confidence 0 1111111 1122222111 233333322 1345566666666777
Q ss_pred HHHHhhccCCccEEEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHH
Q 043873 222 QFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERM 301 (413)
Q Consensus 222 ~~l~~~~~~~yD~VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~ 301 (413)
++++..+ +.||||||||||.....+..
T Consensus 205 ~ll~~l~-~~yD~VIIDtpp~~~~~d~~---------------------------------------------------- 231 (299)
T 3cio_A 205 QLLEWAN-DHYDLVIVDTPPMLAVSDAA---------------------------------------------------- 231 (299)
T ss_dssp HHHHHHH-HHCSEEEEECCCTTTCTHHH----------------------------------------------------
T ss_pred HHHHHHH-hCCCEEEEcCCCCchhHHHH----------------------------------------------------
Confidence 7776654 56999999999965421100
Q ss_pred HHHHHHhcCCCCceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCCC
Q 043873 302 AKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPS 356 (413)
Q Consensus 302 ~~~~~~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~ 356 (413)
.+.. ..+.+++|+.++..+..++.++++.+++.|+++.|+|+|++.+..
T Consensus 232 -----~l~~-~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 232 -----VVGR-SVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp -----HHGG-GCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCCC
T ss_pred -----HHHH-HCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccCC
Confidence 0000 135799999999999999999999999999999999999997654
No 13
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.87 E-value=3.9e-23 Score=201.44 Aligned_cols=236 Identities=16% Similarity=0.211 Sum_probs=130.3
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccccChHHHHH
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKARE 163 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~ 163 (413)
+.|+|+|+ |||||||||+|+|||.+||+.|+||++||+|||++.+..++.......... ........+..
T Consensus 47 ~aKVIAIa-GKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~-------~~~~~~~~~~~-- 116 (314)
T 3fwy_A 47 GAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDV-------LKDVDFHPEEL-- 116 (314)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHH-------HHHTTSCGGGC--
T ss_pred CceEEEEE-CCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhh-------Hhhhccccccc--
Confidence 45889997 899999999999999999999999999999999887766654332211000 00000111100
Q ss_pred HHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCCh
Q 043873 164 EFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTG 243 (413)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~ 243 (413)
...+.+.. .. .++..++.+... +.-+.........+..+.+...++.||||++||||..
T Consensus 117 ~~~d~i~~-~~--~~i~~v~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~ 175 (314)
T 3fwy_A 117 RPEDFVFE-GF--NGVMCVEAGGPP------------------AGTGCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDV 175 (314)
T ss_dssp CHHHHCEE-CG--GGCEEEECCCCC------------------TTCSCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSS
T ss_pred cHhHheee-cC--CCeEEEeCCCCc------------------ccchhhhccHHHHHHHHHhcchhhcCceEeeccCCcc
Confidence 00111110 00 111111111000 0111122222333333333445678999999999865
Q ss_pred hHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCc
Q 043873 244 HTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPT 323 (413)
Q Consensus 244 ~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~pe 323 (413)
..+.+. . .+.. .+.+++|++||
T Consensus 176 ~~~~~~-~-------------------------------------------------------al~a--Ad~viIvt~~e 197 (314)
T 3fwy_A 176 VCGGFA-A-------------------------------------------------------PLQH--ADQAVVVTAND 197 (314)
T ss_dssp CCGGGG-G-------------------------------------------------------GGGT--CSEEEEEECSS
T ss_pred hhhhhH-h-------------------------------------------------------HHhh--CCeEEEEeCCc
Confidence 443221 0 0222 36899999999
Q ss_pred cchHHHHHHHHHHHHhc----CCCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccCCCCCCC
Q 043873 324 VMAISESSRLHASLRKE----CIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDVEIR 399 (413)
Q Consensus 324 ~~~~~ea~r~~~~l~~~----gi~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~~~~e~~ 399 (413)
..++..+.++++.++.. ++++.|+|+|+.... ....+...+...+.|+.|+.+..+......+.|.+..+|.
T Consensus 198 ~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~----~~v~~~a~~~~~~~lg~IP~d~~Vr~a~~~G~pvv~~~P~ 273 (314)
T 3fwy_A 198 FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT----DEVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTLFEMDED 273 (314)
T ss_dssp HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC----HHHHHHHHHHTCCEEEEECCCHHHHHHHHTTCCTTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch----hHHHHHHHHhCCeEEEEecCchHHHHHHHcCCceEEECCC
Confidence 99999999998888764 566779999986542 1111111111112233344332233333345566666665
Q ss_pred CH--HH---HHHHHHhhh
Q 043873 400 GV--PA---LKFMGDMIW 412 (413)
Q Consensus 400 g~--~a---L~~l~~~~~ 412 (413)
.- .+ -..|++.||
T Consensus 274 S~~a~aa~~Y~~LA~eil 291 (314)
T 3fwy_A 274 QDVLAARAEYIRLAESLW 291 (314)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHH
Confidence 42 23 567777776
No 14
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.87 E-value=3.4e-22 Score=186.78 Aligned_cols=181 Identities=13% Similarity=0.202 Sum_probs=114.1
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEecCCC-CCchhhhhcccCCCceeeeccCCCCccccccChHHH
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVISTDPA-HSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKA 161 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~Dp~-~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~ 161 (413)
.+++|+|+|+||||||||+|+|||..||++ |+||++||+|++ ++++.+|+....... +...-......
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~----------l~~~l~~~~~~ 72 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQD----------LADISNASDRL 72 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCC----------HHHHHHTGGGC
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCC----------HHHHHhhHhhh
Confidence 468999999999999999999999999998 999999999999 899999953221110 11100000000
Q ss_pred HHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCC
Q 043873 162 REEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAP 241 (413)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpP 241 (413)
...+.+....... ++++.++.+....... .+....+.++++... +.||||||||||
T Consensus 73 ~~~~~~~~~~~~~--~~l~~l~~~~~~~~~~---------------------~~~~~~l~~~l~~l~-~~yD~viiD~p~ 128 (245)
T 3ea0_A 73 DKSLLDTMVQHIS--PSLDLIPSPATFEKIV---------------------NIEPERVSDLIHIAA-SFYDYIIVDFGA 128 (245)
T ss_dssp CHHHHHHHSEEEE--TTEEEECCCSSHHHHH---------------------HCCHHHHHHHHHHHH-HHCSEEEEEEES
T ss_pred hHHHHHHHhEecC--CCeEEEcCCCChHhhh---------------------cCCHHHHHHHHHHHH-hhCCEEEEeCCC
Confidence 0011111111111 3344333322211100 011233444444333 368999999999
Q ss_pred ChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEec
Q 043873 242 TGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTI 321 (413)
Q Consensus 242 t~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~ 321 (413)
..+..... .+.. .+.+++|+.
T Consensus 129 ~~~~~~~~---------------------------------------------------------~l~~--ad~viiv~~ 149 (245)
T 3ea0_A 129 SIDHVGVW---------------------------------------------------------VLEH--LDELCIVTT 149 (245)
T ss_dssp SCCTTHHH---------------------------------------------------------HGGG--CSEEEEEEC
T ss_pred CCchHHHH---------------------------------------------------------HHHH--CCEEEEEec
Confidence 65432100 1111 357999999
Q ss_pred CccchHHHHHHHHHHHHhcC--CCcceEEEecccCCCC
Q 043873 322 PTVMAISESSRLHASLRKEC--IPVQRLIVNQVLPPSA 357 (413)
Q Consensus 322 pe~~~~~ea~r~~~~l~~~g--i~v~gvVvN~v~~~~~ 357 (413)
|+..++..+.++++.+++.+ ....++|+||+.+...
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~ 187 (245)
T 3ea0_A 150 PSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR 187 (245)
T ss_dssp SSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT
T ss_pred CcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC
Confidence 99999999999999999988 5567999999987543
No 15
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.87 E-value=5e-23 Score=192.56 Aligned_cols=244 Identities=16% Similarity=0.090 Sum_probs=140.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccccChHHHHHHHH
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREEFR 166 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~ 166 (413)
+|+| |+||||||||+|+|||..||++|+||++||+|+|++++.+||.+..... . +. ...+.........
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~l~~~lg~~~~~~~--~-------~~-~~~~~~~~~~~~~ 70 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLGLSIEEAY--A-------IT-PLIEMKDEIREKT 70 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTTSCHHHHTTCCHHHHH--T-------SC-CGGGCHHHHHHHH
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcChHHHhCCCccccc--c-------cc-cchhHHHHHHhhc
Confidence 4777 8999999999999999999999999999999999999999987643210 0 00 0001111111100
Q ss_pred HhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhcc-ccC----CCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCC
Q 043873 167 TASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGE-LLD----TPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAP 241 (413)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-ll~----~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpP 241 (413)
.. .......++++.++........ .++. +.. ....+.... ....+.++++....+.||||||||||
T Consensus 71 ~~-~~~~~~~~~l~~i~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~-~~~~l~~~l~~l~~~~yD~viiD~pp 141 (254)
T 3kjh_A 71 GD-GGLLILNPKVDGDLDKYGRYID-------DKIFLIRMGEIKKGGSQCYCR-ENSFLGSVVSALFLDKKEAVVMDMGA 141 (254)
T ss_dssp CS-SSCCCSSCCCTTSGGGSSEESS-------SSEEEEECCCCCCCCSSCCHH-HHHHHHHHHHHHHHTCCSEEEEEECT
T ss_pred cC-CcccccCCchhccHHhcccccC-------CeEEEEEecccccCCCCCCcc-hHHHHHHHHHHhccCCCCEEEEeCCC
Confidence 00 0000011344444433321110 0000 100 001111110 11234444444313569999999999
Q ss_pred ChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEec
Q 043873 242 TGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTI 321 (413)
Q Consensus 242 t~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~ 321 (413)
..+.... ..+.. .+.+++|+.
T Consensus 142 ~~~~~~~---------------------------------------------------------~~l~~--aD~viiv~~ 162 (254)
T 3kjh_A 142 GIEHLTR---------------------------------------------------------GTAKA--VDMMIAVIE 162 (254)
T ss_dssp TCTTCCH---------------------------------------------------------HHHTT--CSEEEEEEC
T ss_pred cccHHHH---------------------------------------------------------HHHHH--CCEEEEecC
Confidence 6654210 01211 468999999
Q ss_pred CccchHHHHHHHHHHHHhcCCCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEEccCCCCCCCCH
Q 043873 322 PTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDVEIRGV 401 (413)
Q Consensus 322 pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~~p~~~~e~~g~ 401 (413)
|+..++..+.++.+.++..+++..++|+||+.+... ......... ...++..|+++..+......+.|.+...+...
T Consensus 163 ~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~~~--~~~~~~~~~-~~~~~~~Ip~~~~~~~a~~~g~~~~~~~~~~~ 239 (254)
T 3kjh_A 163 PNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNIKE--EKLIKKHLP-EDKILGIIPYNELFIELSLKGEEIWQSTNPAF 239 (254)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCHHH--HHHHHHHSC-GGGEEEEEECCHHHHSCSSSSCCTTSTTSTTH
T ss_pred CCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCChhH--HHHHHHHhc-CCcccccccCcHHHHHHHhCCCccccCCcHHH
Confidence 999999999999999999999888999999874210 000000000 01112234444334444455667777777888
Q ss_pred HHHHHHHHhhh
Q 043873 402 PALKFMGDMIW 412 (413)
Q Consensus 402 ~aL~~l~~~~~ 412 (413)
.+++.|++.|.
T Consensus 240 ~~~~~la~~l~ 250 (254)
T 3kjh_A 240 VNLHDIYQKLR 250 (254)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999888764
No 16
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.86 E-value=4.1e-23 Score=196.23 Aligned_cols=190 Identities=14% Similarity=0.132 Sum_probs=111.4
Q ss_pred chHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccc
Q 043873 76 GFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALE 155 (413)
Q Consensus 76 ~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~ 155 (413)
++..+-...+++|+|+|+||||||||+|+|||..|| +|+||++||+|++++++.+++......... .. ...+...-
T Consensus 18 ~~~~~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~-~~--~~~l~~~l 93 (267)
T 3k9g_A 18 GPGSMDNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGIN-FT--KFNIYEIL 93 (267)
T ss_dssp --------CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCC-TT--TSSHHHHH
T ss_pred CcccCCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccC-cc--cccHHHHh
Confidence 344444567799999999999999999999999999 999999999999999988886532110000 00 00011000
Q ss_pred cChHHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEE
Q 043873 156 INPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRI 235 (413)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~V 235 (413)
.+. ..+.+.+... . ++++.++.+..+..... . ..+. ....+.+.++... +.||||
T Consensus 94 ~~~----~~~~~~i~~~-~--~~l~~lp~~~~~~~~~~---------~---~~~~-----~~~~l~~~l~~l~-~~yD~v 148 (267)
T 3k9g_A 94 KEN----VDIDSTIINV-D--NNLDLIPSYLTLHNFSE---------D---KIEH-----KDFLLKTSLGTLY-YKYDYI 148 (267)
T ss_dssp TTS----SCGGGGCEEE-E--TTEEEECCCGGGGGTTT---------C---CCTT-----GGGHHHHHHHTTC-TTCSEE
T ss_pred cCC----CCHHHhhccC-C--CCEEEEeCChHHHHHHH---------h---hhhh-----HHHHHHHHHHHhh-cCCCEE
Confidence 000 0011111110 0 23444443332211110 0 0010 1223444444443 569999
Q ss_pred EEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCce
Q 043873 236 VFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATE 315 (413)
Q Consensus 236 IiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~ 315 (413)
||||||..+.... ..+.. .+.
T Consensus 149 iiD~pp~~~~~~~---------------------------------------------------------~~l~~--aD~ 169 (267)
T 3k9g_A 149 VIDTNPSLDVTLK---------------------------------------------------------NALLC--SDY 169 (267)
T ss_dssp EEEECSSCSHHHH---------------------------------------------------------HHHTT--CSE
T ss_pred EEECcCCccHHHH---------------------------------------------------------HHHHH--CCe
Confidence 9999996654310 01222 357
Q ss_pred EEEEecCccchHHHHHHHHHHHHhcCCCc-ceEEEeccc
Q 043873 316 FVIVTIPTVMAISESSRLHASLRKECIPV-QRLIVNQVL 353 (413)
Q Consensus 316 ~vlVt~pe~~~~~ea~r~~~~l~~~gi~v-~gvVvN~v~ 353 (413)
+++|++|+..++..+.++++.+++.+.++ .++|+||+.
T Consensus 170 vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 170 VIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp EEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred EEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 99999999999999999999999986543 269999993
No 17
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.86 E-value=1.2e-22 Score=197.18 Aligned_cols=181 Identities=17% Similarity=0.234 Sum_probs=111.2
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccccChHHHHH
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKARE 163 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~ 163 (413)
.+++|+|+ +||||||||+|+|||..||++|+||++||+|+|++++.+|+.....+...-+.+.. ....+..
T Consensus 40 ~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~~~l~d~l~~~~--~~~~~~~------ 110 (307)
T 3end_A 40 GAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVD--FHPEELR------ 110 (307)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTT--SCGGGCC------
T ss_pred CceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCCCCHHHHHhhcc--ccccCCC------
Confidence 56889999 89999999999999999999999999999999999999998643321100000000 0000111
Q ss_pred HHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhh-ccCCccEEEEcCCCC
Q 043873 164 EFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQ-QYNMFTRIVFDTAPT 242 (413)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~-~~~~yD~VIiDtpPt 242 (413)
+.+.... .. ++++.++.+.... ..+... .......++++.. ..+.||||||||||.
T Consensus 111 -~~~~i~~-~~--~~l~vlp~~~~~~------------------~~~~~~-~~~~~~~~~l~~~~~~~~yD~ViiD~p~~ 167 (307)
T 3end_A 111 -PEDFVFE-GF--NGVMCVEAGGPPA------------------GTGCGG-YVVGQTVKLLKQHHLLDDTDVVIFDVLGD 167 (307)
T ss_dssp -HHHHCEE-CG--GGCEEEECCCCCS------------------SSSCTT-HHHHHHHHHHHHTTTTSSCSEEEEEECCS
T ss_pred -HHHhhcc-CC--CCceEEECCCccc------------------ccccch-hhhHHHHHHHHhhhccccCCEEEEeCCCc
Confidence 1111111 11 3333333221110 011111 1122333344331 246799999999995
Q ss_pred hhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecC
Q 043873 243 GHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIP 322 (413)
Q Consensus 243 ~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~p 322 (413)
.....+.. .+.. .+.+++|++|
T Consensus 168 ~~~~~~~~--------------------------------------------------------~l~~--aD~viiv~~~ 189 (307)
T 3end_A 168 VVCGGFAA--------------------------------------------------------PLQH--ADQAVVVTAN 189 (307)
T ss_dssp SCCGGGGG--------------------------------------------------------GGGT--CSEEEEEECS
T ss_pred cchHHHHH--------------------------------------------------------HHHH--CCEEEEEecC
Confidence 54211110 0111 3579999999
Q ss_pred ccchHHHHHHHHHHHHh----cCCCcceEEEecccC
Q 043873 323 TVMAISESSRLHASLRK----ECIPVQRLIVNQVLP 354 (413)
Q Consensus 323 e~~~~~ea~r~~~~l~~----~gi~v~gvVvN~v~~ 354 (413)
+..++..+.++++.++. .++++.|+|+||+.+
T Consensus 190 ~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 190 DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 99999999999999997 456677899999975
No 18
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.86 E-value=3.9e-22 Score=181.34 Aligned_cols=51 Identities=29% Similarity=0.419 Sum_probs=48.1
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcc
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQD 135 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~ 135 (413)
|++|+|+|+|||+||||+|+|||..|+++|+||++||+|||++++.+++..
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~ 51 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAG 51 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcC
Confidence 578999999999999999999999999999999999999999999988743
No 19
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.86 E-value=2.1e-21 Score=184.26 Aligned_cols=181 Identities=18% Similarity=0.201 Sum_probs=117.1
Q ss_pred hhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC-CchhhhhcccCCCceeeeccCCCCccccccCh
Q 043873 80 MVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH-SLSDSFAQDLSGGTLVPVEGVDSPLFALEINP 158 (413)
Q Consensus 80 ~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~-sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~ 158 (413)
-+.+.+++|+|+|+||||||||+|+|||..||++|+||++||+|++. +++.+|+.+.... ... ...+. +
T Consensus 13 ~l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~----~~~-~~~~~-----~ 82 (262)
T 2ph1_A 13 RLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARI----AVS-AEGLE-----P 82 (262)
T ss_dssp HHTTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCC----EEE-TTEEE-----C
T ss_pred hhccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccc----ccc-ccCcc-----c
Confidence 34445789999999999999999999999999999999999999987 6889998764320 000 00000 0
Q ss_pred HHHHHHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEc
Q 043873 159 EKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFD 238 (413)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiD 238 (413)
.. ... ++++.++.+..+... +..+ ...+. .....+.++++...++.|||||||
T Consensus 83 ---------~~--~~~--~~l~vlp~~~~~~~~---------~~~~--~~~~~---~~~~~l~~~l~~l~~~~yD~ViID 135 (262)
T 2ph1_A 83 ---------VL--TQK--YGIKVMSMQFLLPKE---------NTPV--IWRGP---LIAGMIREFLGRVAWGELDHLLID 135 (262)
T ss_dssp ---------EE--CTT--TCCEEECGGGGSTTC---------SSCC--CCCSH---HHHHHHHHHHHSBCCCSCSEEEEE
T ss_pred ---------cc--cCC--CCeEEEeccccCCCc---------ccch--hhcCc---hHHHHHHHHHHHhhccCCCEEEEE
Confidence 00 000 334444333221100 0000 01111 223445555554444679999999
Q ss_pred CCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEE
Q 043873 239 TAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVI 318 (413)
Q Consensus 239 tpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vl 318 (413)
|||..+...+. . + .+. ..+.+++
T Consensus 136 ~pp~~~~~~~~-~------------------------------------------~------------~~~--~aD~vii 158 (262)
T 2ph1_A 136 LPPGTGDAPLT-V------------------------------------------M------------QDA--KPTGVVV 158 (262)
T ss_dssp CCSSSSSHHHH-H------------------------------------------H------------HHH--CCSEEEE
T ss_pred CcCCCchHHHH-H------------------------------------------H------------hhc--cCCeEEE
Confidence 99965421000 0 0 000 1357999
Q ss_pred EecCccchHHHHHHHHHHHHhcCCCcceEEEecccC
Q 043873 319 VTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLP 354 (413)
Q Consensus 319 Vt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~ 354 (413)
|+.|+..++..+.++++.+++.++++.|+|+||+.+
T Consensus 159 v~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 159 VSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp EECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred EecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 999999999999999999999999999999999864
No 20
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.85 E-value=2.2e-21 Score=183.53 Aligned_cols=173 Identities=20% Similarity=0.259 Sum_probs=110.2
Q ss_pred CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCCccccccChHHHH
Q 043873 83 GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAR 162 (413)
Q Consensus 83 ~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~ 162 (413)
..+++|+|+|+||||||||+|+|||..||++|+||++||+|+|++++.+|+.+...+. .. +.... +
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~l~~~~~~~l-~~-------~l~~~-~----- 69 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAERGV-YH-------LLQGE-P----- 69 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHTTCCCSCCH-HH-------HHTTC-C-----
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHHHHhCCCCCCCH-HH-------HHcCC-C-----
Confidence 4568999999999999999999999999999999999999999999999987542210 00 00000 0
Q ss_pred HHHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCC
Q 043873 163 EEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPT 242 (413)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt 242 (413)
+.+.+.. . ++++.++.+..+...+..+.. .+ ..+.+.++. +.||||||||||.
T Consensus 70 --~~~~i~~--~--~~l~vlp~~~~~~~~~~~l~~----------~~--------~~l~~~l~~---~~yD~iiiD~pp~ 122 (257)
T 1wcv_1 70 --LEGLVHP--V--DGFHLLPATPDLVGATVELAG----------AP--------TALREALRD---EGYDLVLLDAPPS 122 (257)
T ss_dssp --GGGTCEE--E--TTEEEECCCTTHHHHHHHHTT----------CT--------THHHHHCCC---TTCSEEEEECCSS
T ss_pred --HHHHccc--c--CCEEEEeCChhHHHHHHHHhh----------HH--------HHHHHHhcc---cCCCEEEEeCCCC
Confidence 0111110 0 233333322211111000000 00 334444433 5699999999997
Q ss_pred hhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecC
Q 043873 243 GHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIP 322 (413)
Q Consensus 243 ~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~p 322 (413)
.+....- .+.. .+.+++|+.|
T Consensus 123 ~~~~~~~---------------------------------------------------------~l~~--aD~viiv~~~ 143 (257)
T 1wcv_1 123 LSPLTLN---------------------------------------------------------ALAA--AEGVVVPVQA 143 (257)
T ss_dssp CCHHHHH---------------------------------------------------------HHHH--CSEEEEEEES
T ss_pred CCHHHHH---------------------------------------------------------HHHH--CCeEEEEecC
Confidence 6542100 0110 3579999999
Q ss_pred ccchHHHHHHHHHHHHhc------CCCcceEEEecccCC
Q 043873 323 TVMAISESSRLHASLRKE------CIPVQRLIVNQVLPP 355 (413)
Q Consensus 323 e~~~~~ea~r~~~~l~~~------gi~v~gvVvN~v~~~ 355 (413)
+..++..+.++++.++.. ++++.|+|+||+.+.
T Consensus 144 ~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 144 EYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp STHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 999999999888888753 567779999998764
No 21
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.83 E-value=3.1e-20 Score=172.67 Aligned_cols=172 Identities=22% Similarity=0.259 Sum_probs=113.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC-CCCchhhhhcccCCCceeeeccCCCCccccccChHHHHH
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP-AHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKARE 163 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp-~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~ 163 (413)
+++|+|+|+|||+||||+|+|||..||++|+||++||+|+ +++++.+|+.+........ +.....+.
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~-------~l~~~~~~----- 69 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHD-------VLAGEANV----- 69 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHH-------HHTTSSCG-----
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHH-------HhcCCCCH-----
Confidence 3789999999999999999999999999999999999999 4899999987643100000 00000010
Q ss_pred HHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHH--H-HHHHHHHHHhhccCCccEEEEcCC
Q 043873 164 EFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAI--A-ISKVMQFVESQQYNMFTRIVFDTA 240 (413)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~--~-~~~l~~~l~~~~~~~yD~VIiDtp 240 (413)
.+....... .+++.++. +...+.. . ...+.++++... +.|||||||||
T Consensus 70 --~~~i~~~~~--~~l~~lp~------------------------~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~~ 120 (237)
T 1g3q_A 70 --EDAIYMTQF--DNVYVLPG------------------------AVDWEHVLKADPRKLPEVIKSLK-DKFDFILIDCP 120 (237)
T ss_dssp --GGGCEECSS--TTEEEECC------------------------CCSHHHHHHCCGGGHHHHHHTTG-GGCSEEEEECC
T ss_pred --HHHhhcCCC--CCEEEEeC------------------------CCccchhhhcCHHHHHHHHHHHH-hcCCEEEEECC
Confidence 011111000 12222221 1111100 0 233444554443 56999999999
Q ss_pred CChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEe
Q 043873 241 PTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVT 320 (413)
Q Consensus 241 Pt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt 320 (413)
|..+... . ..+.. .+.+++|+
T Consensus 121 ~~~~~~~-~--------------------------------------------------------~~~~~--ad~vi~v~ 141 (237)
T 1g3q_A 121 AGLQLDA-M--------------------------------------------------------SAMLS--GEEALLVT 141 (237)
T ss_dssp SSSSHHH-H--------------------------------------------------------HHHTT--CSEEEEEE
T ss_pred CCcCHHH-H--------------------------------------------------------HHHHH--CCeEEEEe
Confidence 9654320 0 01211 35799999
Q ss_pred cCccchHHHHHHHHHHHHhcCCCcceEEEecccCCC
Q 043873 321 IPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPS 356 (413)
Q Consensus 321 ~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~ 356 (413)
.|+..++.++.++++.+++.|+++.++|+|++.+..
T Consensus 142 ~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 142 NPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred cCCcccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 999999999999999999999999999999998754
No 22
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.83 E-value=2.5e-21 Score=192.46 Aligned_cols=50 Identities=28% Similarity=0.460 Sum_probs=47.1
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhc
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQ 134 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~ 134 (413)
|++|+|+|+||||||||+|+|||..||+.|+|||+||+|+|++++.+|..
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~~ 50 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLT 50 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHSC
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhcC
Confidence 57999999999999999999999999999999999999999998888754
No 23
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.83 E-value=9.7e-21 Score=190.79 Aligned_cols=54 Identities=26% Similarity=0.323 Sum_probs=39.4
Q ss_pred CCCcEEEEEcCCCCccHHHHHHHHHHHHH------HcCCCeeEEecCCCCCchhhhhccc
Q 043873 83 GTQRKHYMLGGKGGVGKTSCAASLAVKFA------NHGHPTIVISTDPAHSLSDSFAQDL 136 (413)
Q Consensus 83 ~~~~~i~~~s~kgGvGKtT~a~~lA~~la------~~g~~vllvd~Dp~~sls~~lg~~~ 136 (413)
..+++|+|+|+||||||||+|+|||..|| +.|+||++||+|++++++.+|+.+.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~~l~~~l~~~~ 168 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASSTMFLDHTH 168 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGGGSCC----
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhhhhCCCc
Confidence 45789999999999999999999999999 6899999999999999999998764
No 24
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.83 E-value=8.9e-21 Score=190.71 Aligned_cols=53 Identities=26% Similarity=0.291 Sum_probs=49.3
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHH------cCCCeeEEecCCCCCchhhhhccc
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFAN------HGHPTIVISTDPAHSLSDSFAQDL 136 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~------~g~~vllvd~Dp~~sls~~lg~~~ 136 (413)
.+++|+|+|+||||||||+|+|||..||+ .|+||++||+|+|++++.+|+.+.
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~l~~~l~~~~ 165 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKH 165 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCHHHHHHSCHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCChhHHhCCcc
Confidence 47899999999999999999999999994 799999999999999999998764
No 25
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.82 E-value=1.8e-20 Score=180.71 Aligned_cols=194 Identities=12% Similarity=0.128 Sum_probs=120.3
Q ss_pred cccchHHhhcCCCcEEEEEc--CCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccCCCceeeeccCCCC
Q 043873 73 TVAGFDEMVAGTQRKHYMLG--GKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSP 150 (413)
Q Consensus 73 ~~~~~~~~~~~~~~~i~~~s--~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~~~~~~~v~~~~~~ 150 (413)
.+..++..+....++|+|++ +||||||||+|+|||..||++|+||++||+|+|++++.+++.......+ . .+
T Consensus 22 ~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~-~----~~- 95 (298)
T 2oze_A 22 ILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELP-R----VN- 95 (298)
T ss_dssp HHHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCC-S----SC-
T ss_pred HHHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCC-c----cc-
Confidence 34555555656678899998 8999999999999999999999999999999999988877543211100 0 00
Q ss_pred ccccccChHHHHH--HHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhc
Q 043873 151 LFALEINPEKARE--EFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQ 228 (413)
Q Consensus 151 l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~ 228 (413)
+. .... ...+.+... . ++++.++.+..+.... .+. ...........+.++++...
T Consensus 96 l~-------~~l~~~~~~~~~~~~-~--~~l~vlp~~~~~~~~~-~l~------------~~~~~~~~~~~l~~~l~~l~ 152 (298)
T 2oze_A 96 FY-------EGLKNGNLASSIVHL-T--DNLDLIPGTFDLMLLP-KLT------------RSWTFENESRLLATLLAPLK 152 (298)
T ss_dssp HH-------HHHHHTCCGGGCEES-S--SSEEEECCCGGGGGHH-HHT------------TTSCHHHHHTHHHHHHGGGG
T ss_pred HH-------HHHhcCChhhhhccc-C--CCeEEEeCCchHHHHH-HHh------------hhhccccHHHHHHHHHHHHh
Confidence 10 0000 000111111 1 3444444433222111 000 00000011233445555443
Q ss_pred cCCccEEEEcCCCChhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHh
Q 043873 229 YNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLF 308 (413)
Q Consensus 229 ~~~yD~VIiDtpPt~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l 308 (413)
+.||||||||||..+..... .+
T Consensus 153 -~~yD~IiiD~pp~~~~~~~~---------------------------------------------------------~l 174 (298)
T 2oze_A 153 -SDYDLIIIDTVPTPSVYTNN---------------------------------------------------------AI 174 (298)
T ss_dssp -GGCSEEEEEECSSCSHHHHH---------------------------------------------------------HH
T ss_pred -cCCCEEEEECCCCccHHHHH---------------------------------------------------------HH
Confidence 56999999999976643100 01
Q ss_pred cCCCCceEEEEecCccchHHHHHHHHHHHHhc------CCCcceEEEecccCC
Q 043873 309 RDPDATEFVIVTIPTVMAISESSRLHASLRKE------CIPVQRLIVNQVLPP 355 (413)
Q Consensus 309 ~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~------gi~v~gvVvN~v~~~ 355 (413)
.. .+.+++|+.|+..++..+.++++.++.. ++++.|+|+||+.+.
T Consensus 175 ~~--aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 175 VA--SDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp HH--CSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred HH--CCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 11 3579999999999999999999998873 788899999998764
No 26
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.82 E-value=9.7e-21 Score=179.15 Aligned_cols=172 Identities=20% Similarity=0.205 Sum_probs=111.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC-CCCchhhhhcccCCCceeeeccCCCCccccccChHHHHH
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP-AHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKARE 163 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp-~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~ 163 (413)
+++|+|+|+||||||||+|+|||..||++|+||++||+|+ +++++.+|+.+........ +.....+.
T Consensus 2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~-------~l~~~~~~----- 69 (263)
T 1hyq_A 2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQN-------VLAGEARI----- 69 (263)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHH-------HHTTSSCG-----
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHH-------HHcCCCcH-----
Confidence 3789999999999999999999999999999999999999 5899999987643110000 00000000
Q ss_pred HHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHH-HHHHHHHHHhhccCCccEEEEcCCCC
Q 043873 164 EFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIA-ISKVMQFVESQQYNMFTRIVFDTAPT 242 (413)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~-~~~l~~~l~~~~~~~yD~VIiDtpPt 242 (413)
.+.+... . .+++.++... .....+ .. ...+.+.++... +.||||||||||.
T Consensus 70 --~~~i~~~-~--~~l~~lp~~~---------------------~~~~~~-~~~~~~l~~~l~~l~-~~yD~viiD~~~~ 121 (263)
T 1hyq_A 70 --DEAIYVG-P--GGVKVVPAGV---------------------SLEGLR-KANPEKLEDVLTQIM-ESTDILLLDAPAG 121 (263)
T ss_dssp --GGGCEEC-G--GGCEEEECCS---------------------CHHHHH-HHCHHHHHHHHHHHH-HTCSEEEEECCSS
T ss_pred --HHhheeC-C--CCeEEEcCCC---------------------CcChhh-ccChHHHHHHHHHHH-hhCCEEEEeCCCC
Confidence 0000000 0 1222222100 000111 11 234444454443 4699999999996
Q ss_pred hhHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecC
Q 043873 243 GHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIP 322 (413)
Q Consensus 243 ~~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~p 322 (413)
.+..... .+.. .+.+++|+.|
T Consensus 122 ~~~~~~~---------------------------------------------------------~~~~--ad~vi~v~~~ 142 (263)
T 1hyq_A 122 LERSAVI---------------------------------------------------------AIAA--AQELLLVVNP 142 (263)
T ss_dssp SSHHHHH---------------------------------------------------------HHHH--SSEEEEEECS
T ss_pred CChHHHH---------------------------------------------------------HHHH--CCEEEEEeCC
Confidence 5532100 0111 3479999999
Q ss_pred ccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 323 TVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 323 e~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
+..++..+.++++.+++.++++.++|+|++.+.
T Consensus 143 ~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 143 EISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred ChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 999999999999999999999999999999764
No 27
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.81 E-value=2.6e-20 Score=175.51 Aligned_cols=175 Identities=22% Similarity=0.231 Sum_probs=111.1
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC-CCCchhhhhcccCCCceeeeccCCCCccccccChHHHHH
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP-AHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKARE 163 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp-~~sls~~lg~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~ 163 (413)
+++|+|+|+||||||||+|+|||..||++|+||++||+|+ +++++.+||.+.... ..+...-....
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~---------~~l~~~l~~~~---- 68 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVV---------YDFVNVIQGDA---- 68 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCC---------SCHHHHHTTSS----
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCccc---------CCHHHHhcCCC----
Confidence 3789999999999999999999999999999999999999 789999998764310 00110000000
Q ss_pred HHHHhhccCCCCCCchhhHHhhhchhhhHHHhhhhhhccccCCCCCChHHHHHHHHHHHHHHhhccCCccEEEEcCCCCh
Q 043873 164 EFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTG 243 (413)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~pg~~e~~~~~~l~~~l~~~~~~~yD~VIiDtpPt~ 243 (413)
.+.+....... .++++.++.+.... .+.+....+.++++......||||||||||..
T Consensus 69 ~~~~~~~~~~~-~~~l~~lp~~~~~~----------------------~~~~~~~~~~~~l~~l~~~~yD~viiD~p~~~ 125 (260)
T 3q9l_A 69 TLNQALIKDKR-TENLYILPASQTRD----------------------KDALTREGVAKVLDDLKAMDFEFIVCDSPAGI 125 (260)
T ss_dssp CHHHHCEECSS-STTEEEECCCSCCC----------------------TTSSCHHHHHHHHHHHHHTTCSEEEEECCSSS
T ss_pred ChHHheeccCC-CCCEEEecCCCccc----------------------hhhCCHHHHHHHHHHHhccCCCEEEEcCCCCC
Confidence 01111111100 02343333222100 00011223334444333226999999999965
Q ss_pred hHHhhccchHHHHHHHhHHHHHHHHHhhhhHHHHhhhCCcccchhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEecCc
Q 043873 244 HTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPT 323 (413)
Q Consensus 244 ~~l~~L~lp~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~l~~l~~~~~~~~~~l~d~~~t~~vlVt~pe 323 (413)
+..... .+.. .+.+++|+.|+
T Consensus 126 ~~~~~~---------------------------------------------------------~l~~--ad~vi~v~~~~ 146 (260)
T 3q9l_A 126 ETGALM---------------------------------------------------------ALYF--ADEAIITTNPE 146 (260)
T ss_dssp SHHHHH---------------------------------------------------------HHHT--CSEEEEEECSS
T ss_pred CHHHHH---------------------------------------------------------HHHh--CCEEEEEecCC
Confidence 432100 1111 35799999999
Q ss_pred cchHHHHHHHHHHHHhcCC--------CcceEEEecccC
Q 043873 324 VMAISESSRLHASLRKECI--------PVQRLIVNQVLP 354 (413)
Q Consensus 324 ~~~~~ea~r~~~~l~~~gi--------~v~gvVvN~v~~ 354 (413)
..++..+.++++.++..+. ...++|+||+.+
T Consensus 147 ~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 147 VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 9999999999999998763 466999999865
No 28
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.80 E-value=4.3e-20 Score=169.59 Aligned_cols=48 Identities=33% Similarity=0.371 Sum_probs=45.4
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhc
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQ 134 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~ 134 (413)
++|+|+|+||||||||+|+|||..|+++| ||++||+|+|++++.+++.
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~ 48 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKR 48 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHH
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcC
Confidence 47999999999999999999999999999 9999999999999988875
No 29
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.80 E-value=3.5e-19 Score=171.15 Aligned_cols=49 Identities=24% Similarity=0.494 Sum_probs=45.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhc
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQ 134 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~ 134 (413)
|++|+| ++||||||||+|+|||..||++|+||++||+|+|++++.++..
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~ 50 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILH 50 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHC
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcC
Confidence 578888 6899999999999999999999999999999999988887764
No 30
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.79 E-value=4.1e-19 Score=168.51 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=44.4
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhc
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQ 134 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~ 134 (413)
|++|+| ++||||||||+|+|||..||++|+||++||+|+|++.+.++..
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~ 49 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLG 49 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHT
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcC
Confidence 467888 6899999999999999999999999999999999988777654
No 31
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.77 E-value=1e-18 Score=174.31 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=51.1
Q ss_pred CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccC
Q 043873 83 GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLS 137 (413)
Q Consensus 83 ~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~ 137 (413)
..+++|+|+|+||||||||+|+|||..||++|+||++||+|++++++.+||.+..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~~ 195 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGN 195 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSCS
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCCC
Confidence 3578999999999999999999999999999999999999988999999988654
No 32
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.77 E-value=2e-20 Score=179.82 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=47.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC-CCCchhhhhcc
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP-AHSLSDSFAQD 135 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp-~~sls~~lg~~ 135 (413)
++|+|+|+||||||||+|+|||..||++|+||++||+|+ |++++.+|+.+
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~ 55 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENR 55 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHH
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCC
Confidence 689999999999999999999999999999999999999 99999999864
No 33
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.66 E-value=5.5e-16 Score=142.74 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=37.9
Q ss_pred eEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 315 EFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 315 ~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
.+++|+.++..++.++.+.++.++..++++.|+|+||+.+.
T Consensus 140 ~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 140 PVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp CEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred CEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 48999999999999999999999999999999999999764
No 34
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.42 E-value=1.4e-12 Score=132.23 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=38.2
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEecCCCCCc
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVISTDPAHSL 128 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~Dp~~sl 128 (413)
+++|+|+ ||||+||||++++||..++++ |+||++||+|++.+.
T Consensus 100 ~~vI~iv-G~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~ 143 (433)
T 2xxa_A 100 PAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA 143 (433)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTT
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 4566666 799999999999999999999 999999999998653
No 35
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.31 E-value=1.3e-11 Score=119.01 Aligned_cols=43 Identities=23% Similarity=0.331 Sum_probs=37.6
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCch
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLS 129 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls 129 (413)
++++++ |++|+||||++.+||..++..|++|+++|+|++.+.+
T Consensus 99 ~vi~i~-G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a 141 (297)
T 1j8m_F 99 YVIMLV-GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAA 141 (297)
T ss_dssp EEEEEE-CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHH
Confidence 555554 8999999999999999999999999999999976543
No 36
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.29 E-value=6.9e-11 Score=115.14 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=37.0
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
.+++|+|++ .+|+||||++.+||..++..|++|+++|+|++.
T Consensus 104 ~~~vI~ivG-~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 104 RLNIFMLVG-VNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp SCEEEEEES-STTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CCeEEEEEC-CCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 346777775 599999999999999999999999999999865
No 37
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.22 E-value=6.3e-11 Score=114.17 Aligned_cols=43 Identities=26% Similarity=0.527 Sum_probs=38.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCc
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSL 128 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sl 128 (413)
+++++++ |++|+||||++.+||..++..|.+|+++|+|++.+.
T Consensus 98 ~~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~ 140 (295)
T 1ls1_A 98 RNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 140 (295)
T ss_dssp SEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh
Confidence 3667776 899999999999999999999999999999987643
No 38
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.17 E-value=4.4e-10 Score=105.39 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=40.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCch
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLS 129 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls 129 (413)
..+++++|||||||||++.+||..++ .|+||++||+|+|.+..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~ 56 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKEL 56 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCcccc
Confidence 67899999999999999999999999 99999999999987654
No 39
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.17 E-value=1.1e-10 Score=117.68 Aligned_cols=44 Identities=25% Similarity=0.524 Sum_probs=38.2
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCch
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLS 129 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls 129 (413)
+++++++ |++|+||||++.+||..++..|++|+++|+|++.+..
T Consensus 98 ~~vi~i~-G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa 141 (425)
T 2ffh_A 98 RNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA 141 (425)
T ss_dssp SEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchh
Confidence 3566666 8999999999999999999999999999999876533
No 40
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.08 E-value=5.8e-09 Score=97.98 Aligned_cols=80 Identities=8% Similarity=0.073 Sum_probs=55.3
Q ss_pred eEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCCCCCchHHHHHHHHHHHHHHHHhhcCCCCCCCceEE-ccC
Q 043873 315 EFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQ-APL 393 (413)
Q Consensus 315 ~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~~~~~~~~~~~~~~q~~~l~~i~~d~~~~~~~~~~-~p~ 393 (413)
.+++|+.++..++..+...++.++..|+++.|+|+|++..... ... + ..++.|++ . .|+.. +|+
T Consensus 159 pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~~~~--~~~-----~---~~~~~le~---~--vpvLG~iP~ 223 (251)
T 3fgn_A 159 AALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPG--LVA-----A---SNRSALAR---I--AMVRAALPA 223 (251)
T ss_dssp EEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCC--HHH-----H---HHHHHHHH---H--SCEEEEEET
T ss_pred CEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCCchh--hhh-----h---hHHHHHHH---h--CCEEEEeeC
Confidence 5899999999999999999999999999999999999854321 111 1 12344443 1 45664 477
Q ss_pred CCCCCCCHHHHHHHHHh
Q 043873 394 VDVEIRGVPALKFMGDM 410 (413)
Q Consensus 394 ~~~e~~g~~aL~~l~~~ 410 (413)
.... ...+.+...+..
T Consensus 224 ~~~~-l~~~~~~~~~~~ 239 (251)
T 3fgn_A 224 GAAS-LDAGDFAAMSAA 239 (251)
T ss_dssp TGGG-CCHHHHHHHHHH
T ss_pred CCCc-CCHHHHHHHHhc
Confidence 6544 555666655544
No 41
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.06 E-value=3.8e-10 Score=104.66 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=38.3
Q ss_pred eEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 315 EFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 315 ~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
.+++|+.+...++.++...++.++..|+++.|+|+|++.+.
T Consensus 142 pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 142 PVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp CEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred CEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 48999999999999999999999999999999999998764
No 42
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.05 E-value=1.6e-09 Score=109.40 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=35.4
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
.++++.|.+|+||||++.+||..++++|+||+++++|++..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 34444567999999999999999999999999999998653
No 43
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.01 E-value=2.6e-09 Score=109.84 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=36.5
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
++|+|+ |.+||||||++.+||..++++|+||++||+|++.+
T Consensus 102 ~vI~iv-G~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~ 142 (504)
T 2j37_W 102 NVIMFV-GLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRA 142 (504)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSS
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 456666 77999999999999999999999999999999765
No 44
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.99 E-value=5.8e-09 Score=100.83 Aligned_cols=41 Identities=24% Similarity=0.426 Sum_probs=35.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
++++++++ .+|+||||++.+||..++..|++|+++|+|++.
T Consensus 104 ~~vi~ivG-~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 104 PFVIMVVG-VNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp CEEEEEEC-CTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CeEEEEEc-CCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 45676665 599999999999999999999999999999754
No 45
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=98.94 E-value=1.5e-08 Score=94.72 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=36.5
Q ss_pred hHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 77 FDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 77 ~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.++.+...++.|.|++...|+|||++++.|+..|+++|+||..+-
T Consensus 13 ~~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 13 GRENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp ------CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hhhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 345566667899999999999999999999999999999999874
No 46
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.91 E-value=1.1e-08 Score=103.09 Aligned_cols=39 Identities=31% Similarity=0.337 Sum_probs=35.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
.++++.|++|+||||++.+||..++.+|++|+++|+|++
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 455556999999999999999999999999999999964
No 47
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.89 E-value=1.1e-08 Score=103.42 Aligned_cols=41 Identities=29% Similarity=0.386 Sum_probs=36.4
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
++|+++ |.+|+||||++.+||..++++|+||+++|+|++.+
T Consensus 100 ~vI~iv-G~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~ 140 (432)
T 2v3c_C 100 NVILLV-GIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRP 140 (432)
T ss_dssp CCEEEE-CCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCT
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCc
Confidence 456665 57999999999999999999999999999999764
No 48
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.81 E-value=5.2e-08 Score=93.70 Aligned_cols=41 Identities=27% Similarity=0.296 Sum_probs=35.5
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDPAH 126 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp~~ 126 (413)
+++++++ |.+|+||||++.+||..++. .|++|+++|+|++.
T Consensus 105 g~vi~lv-G~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 105 SKYIVLF-GSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp SSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 4566666 66999999999999999995 89999999999864
No 49
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.79 E-value=6.7e-09 Score=95.53 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=43.6
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhh
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSF 132 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~l 132 (413)
++..+++++||||||||++.++|..++++|++|+++|+|+|++...+-
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEA 52 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHH
Confidence 467789999999999999999999999999999999999998877544
No 50
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.62 E-value=3.1e-07 Score=90.46 Aligned_cols=42 Identities=26% Similarity=0.532 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
..+++++|++|+||||++.+|+..++..|+||+++|+||+.+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSST 120 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 345566789999999999999999999999999999999765
No 51
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.89 E-value=0.0002 Score=73.07 Aligned_cols=41 Identities=29% Similarity=0.458 Sum_probs=34.2
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
+.+++++ |.+|+||||+...||..+...|.+|++.+.|...
T Consensus 293 GeVI~LV-GpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 293 PFVILMV-GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp TEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred CeEEEEE-CCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 3455554 8899999999999999999889999999998643
No 52
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.83 E-value=0.00014 Score=65.18 Aligned_cols=38 Identities=26% Similarity=0.296 Sum_probs=34.2
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..|.|+.|+| .||||.|..+|...+.+|+||+++-+..
T Consensus 29 g~i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 29 GIIIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCEEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ceEEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 3577887888 9999999999999999999999998875
No 53
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=97.81 E-value=2.4e-05 Score=78.50 Aligned_cols=52 Identities=23% Similarity=0.202 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCC---CccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccC
Q 043873 84 TQRKHYMLGGKG---GVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLS 137 (413)
Q Consensus 84 ~~~~i~~~s~kg---GvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~ 137 (413)
..++|+|+|..+ |+||||+++|||..||+.|+||+++ =++++++..||....
T Consensus 56 ~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi--LR~Psl~~~FGikgg 110 (557)
T 3pzx_A 56 DGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC--LREPSLGPSFGIKGG 110 (557)
T ss_dssp CCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE--ECCCCSHHHHHTCCC
T ss_pred CCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE--eCCCCccccCCCCCC
Confidence 468999999999 9999999999999999999999999 357899999998754
No 54
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.53 E-value=0.0035 Score=60.03 Aligned_cols=40 Identities=30% Similarity=0.430 Sum_probs=34.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
+.+++++ |.+|+||||+...||..+...|.+|++.+.|..
T Consensus 102 g~vi~lv-G~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 102 GRVVLVV-GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp SSEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 4566666 789999999999999999988999999999964
No 55
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.33 E-value=0.0026 Score=61.62 Aligned_cols=39 Identities=33% Similarity=0.445 Sum_probs=33.8
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
.++.+.|..|+||||+...||..+...|.+|++++.|..
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 344455889999999999999999999999999999964
No 56
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.28 E-value=0.00026 Score=69.54 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=46.0
Q ss_pred CCcccccchHHhhc-C--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVA-G--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~-~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
....++..|+.++. + ....++++.|++|+||||+|.++|..+++.|.+|++||++.
T Consensus 43 ~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 43 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34567889999986 3 23335556699999999999999999999999999999963
No 57
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.07 E-value=0.00064 Score=62.06 Aligned_cols=54 Identities=26% Similarity=0.465 Sum_probs=44.1
Q ss_pred cccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 71 RETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 71 ~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..+++.++.++.++ ...++++.|.+|+||||++.++|..++..|.+|++++.+.
T Consensus 6 ~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 6 KTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp CCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred cCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 45778888887542 2335566699999999999999999999999999999885
No 58
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=97.07 E-value=0.004 Score=67.82 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=36.1
Q ss_pred eEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEeccc
Q 043873 315 EFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVL 353 (413)
Q Consensus 315 ~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~ 353 (413)
.+++|+.....++..+.-.++.++..|+++.|||+|++.
T Consensus 233 PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~ 271 (831)
T 4a0g_A 233 PGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHG 271 (831)
T ss_dssp CEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCS
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCc
Confidence 489999999999999999999999999999999999764
No 59
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.01 E-value=0.00064 Score=59.74 Aligned_cols=39 Identities=31% Similarity=0.260 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++.|..|+||||++..||..+...|.+|.++|.|.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 456667799999999999999999999999999999873
No 60
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.92 E-value=0.00098 Score=60.85 Aligned_cols=55 Identities=31% Similarity=0.559 Sum_probs=44.3
Q ss_pred CcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHH-HcCCCeeEEecCC
Q 043873 70 PRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la-~~g~~vllvd~Dp 124 (413)
...++++||+++.++ ...++++.|.+|+|||+++.++|...+ +.|.+|++++++-
T Consensus 12 i~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 12 VKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp ECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred ecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 456888999999742 344667779999999999999998755 5688999999873
No 61
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.92 E-value=0.00082 Score=66.22 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=45.6
Q ss_pred CCcccccchHHhhc-C---CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVA-G---TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~-~---~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
....++..|+.++. + .+.++ ++.|.+|+||||+|.++|..+++.|.+|++||++.
T Consensus 54 ~i~TG~~~LD~~Lg~GGl~~G~li-~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 54 VVSTGSLSLDLALGVGGIPRGRIT-EIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEE-EEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eecCCCHHHHHHhCCCCccCCcEE-EEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 34567889999997 3 34444 44689999999999999999999999999999984
No 62
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.84 E-value=0.0013 Score=63.93 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
..+++ +.|++|+||||+..+|+..+...|.+|.+++.|++.+
T Consensus 56 ~~~i~-i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~ 97 (341)
T 2p67_A 56 TLRLG-VTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 97 (341)
T ss_dssp SEEEE-EEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred CEEEE-EEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcC
Confidence 34444 4579999999999999999999999999999999765
No 63
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.84 E-value=0.0013 Score=58.92 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=41.8
Q ss_pred cccccchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 71 RETVAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 71 ~~~~~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
..++..++.++.+ ....++++.|++|+||||++.++|. ..|.+|++++.+.+.
T Consensus 3 ~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~ 57 (220)
T 2cvh_A 3 STGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGF 57 (220)
T ss_dssp CCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCC
T ss_pred ccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCC
Confidence 3467888888863 2334666779999999999999998 678899999988643
No 64
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.83 E-value=0.0013 Score=63.20 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=45.2
Q ss_pred CcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 70 PRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 70 ~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
...++..|+.++.+ ...-++++.|.+|+||||++.++|..++.+|.+|+++++.
T Consensus 51 i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 51 VPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp BCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred ccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 44578899998854 2334677779999999999999999999999999999987
No 65
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=96.74 E-value=0.023 Score=55.32 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=33.6
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
..+++.+++.--.+||||++..|...+.++|.++..+=
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~ 188 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLA 188 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEe
Confidence 35778888889999999999999999999999998843
No 66
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.72 E-value=0.0016 Score=65.81 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=46.7
Q ss_pred CCcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
....++..|+.++.+ ...-++++.|.+|+||||++.++|...+.+|.+|+++++.-
T Consensus 179 gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 179 GVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp SBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 345678899998864 23347777799999999999999999999999999999874
No 67
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.71 E-value=0.0015 Score=63.87 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=45.5
Q ss_pred CCcccccchHHhhc-CC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVA-GT--QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~-~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
....++..++.++. ++ ...++.+.|.+|+||||++.+++..+++.|.+|+++|++.
T Consensus 41 ~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 41 VIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 34567889999988 42 2335555599999999999999999999999999999973
No 68
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.69 E-value=0.002 Score=56.36 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=33.8
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
++++.++ |..|+||||++..|+..|..+|++|.++..|+.
T Consensus 4 ~~~i~i~-G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 4 MNVWQVV-GYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 3555555 577999999999999999999999999999975
No 69
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.64 E-value=0.0022 Score=62.39 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=45.7
Q ss_pred CcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 70 PRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
...++..|+.++.+ ...-++++.|.+|+||||++.++|..++..|.+|+++++.-
T Consensus 29 i~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 29 IPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp BCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred ccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 44578889988864 22346677799999999999999999999999999999873
No 70
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.46 E-value=0.0034 Score=56.42 Aligned_cols=52 Identities=27% Similarity=0.453 Sum_probs=41.8
Q ss_pred ccccchHHhhcC---CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 72 ETVAGFDEMVAG---TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 72 ~~~~~~~~~~~~---~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+++.++.++.+ .+. ++++.|.+|+||||++.+++..++..|.+|++++.+.
T Consensus 7 tg~~~Ld~~~~ggi~~G~-~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 7 TGILDFDKLIQGGIPQGF-FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp CSCHHHHGGGTTSEETTC-EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CCchHHHHHhcCCCcCCC-EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 456778877752 234 4555699999999999999999998889999999875
No 71
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.46 E-value=0.005 Score=60.30 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=45.6
Q ss_pred CcccccchHHhhc-CC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 70 PRETVAGFDEMVA-GT--QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 70 ~~~~~~~~~~~~~-~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
...++..|+.++. ++ ...++.+.|.+|+||||++.+++..++..|.+|++||+...
T Consensus 42 i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 42 IPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp ECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred ecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 4567889999998 42 33455556889999999999999999999999999998743
No 72
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.41 E-value=0.0029 Score=59.00 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=33.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++.|-+|+||||++..|+..|...|..++++|.|
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 4667779999999999999999999899999888887
No 73
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.32 E-value=0.0039 Score=63.82 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=45.5
Q ss_pred Ccc-cccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEecCC
Q 043873 70 PRE-TVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVISTDP 124 (413)
Q Consensus 70 ~~~-~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~Dp 124 (413)
... ++..|+.++.+ ....++++.|.+|+||||++.++|..++.. |.+|++++++-
T Consensus 224 i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 224 LLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp SCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred ccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 345 78899998864 233466777999999999999999999987 99999999874
No 74
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.24 E-value=0.005 Score=62.04 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=44.9
Q ss_pred CcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCC
Q 043873 70 PRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp 124 (413)
...++..++.++.+ ...-++++.|.+|+||||++.++|...+. .|.+|+++++.-
T Consensus 183 i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 183 VRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred ccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44678899998854 23346677799999999999999999997 589999999873
No 75
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.11 E-value=0.008 Score=60.71 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=44.6
Q ss_pred CcccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCC
Q 043873 70 PRETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp 124 (413)
...++..++.++.+ ...-++++.|.+|+||||++.++|..++. .|.+|++++..-
T Consensus 186 i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 186 IPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp BCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 44577889988854 23346666799999999999999999997 688999999874
No 76
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.11 E-value=0.0056 Score=58.89 Aligned_cols=53 Identities=9% Similarity=0.213 Sum_probs=44.1
Q ss_pred CcccccchHHhhc----C--CCcEEEEEcCCCCccHHHHHHHHHHHHHHc--CCCeeEEecC
Q 043873 70 PRETVAGFDEMVA----G--TQRKHYMLGGKGGVGKTSCAASLAVKFANH--GHPTIVISTD 123 (413)
Q Consensus 70 ~~~~~~~~~~~~~----~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~--g~~vllvd~D 123 (413)
...++..|+.++. + ... +..+.|.+|+||||++.+++..+++. |.+|+.||+.
T Consensus 7 isTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 7 VRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp BCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred ecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 4567889999987 4 233 56677899999999999999999987 8899999985
No 77
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.11 E-value=0.0044 Score=55.53 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=32.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
..+++.|.+|+||||+..+|+..+... ++|.+|+.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~ 69 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVS 69 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCC
Confidence 344555899999999999999987655 899999999864
No 78
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.02 E-value=0.0047 Score=53.86 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=31.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|-.|+||||++..|+..+...|+++..++.|
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 566779999999999999999999889999888654
No 79
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=96.00 E-value=0.042 Score=56.61 Aligned_cols=42 Identities=26% Similarity=0.343 Sum_probs=37.6
Q ss_pred cEEEEE-cCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 86 RKHYML-GGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 86 ~~i~~~-s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
+-|+|. +--.++||+++++.|+..|.++|+||..+=.||.-|
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n 46 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYIN 46 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSC
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeecccccc
Confidence 567888 668999999999999999999999999999997644
No 80
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.85 E-value=0.0044 Score=59.71 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=43.2
Q ss_pred CcccccchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHHc------CCCeeEEecCC
Q 043873 70 PRETVAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANH------GHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~------g~~vllvd~Dp 124 (413)
...++..++.++.+ ....++++.|.+|+||||++.++|...+.. |.+|++||++-
T Consensus 89 i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 89 ISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp ECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred ccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45678899999864 223355666999999999999999987655 78999999873
No 81
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.84 E-value=0.0072 Score=58.77 Aligned_cols=56 Identities=23% Similarity=0.219 Sum_probs=44.4
Q ss_pred CCcccccchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHHH------cCCCeeEEecCC
Q 043873 69 TPRETVAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFAN------HGHPTIVISTDP 124 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~------~g~~vllvd~Dp 124 (413)
....++..++.++.+ ....++++.|.+|+||||++.++|...+. .|.+|++||++.
T Consensus 103 ~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 103 HITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 345678899999964 23456677799999999999999998655 578999999874
No 82
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.74 E-value=0.012 Score=52.91 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=38.1
Q ss_pred cchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 75 AGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 75 ~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..++.+........+++.|..|+||||++..++..+...|.++..++++
T Consensus 41 ~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 41 GALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp HHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 4445555443334555669999999999999999999999999999875
No 83
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=95.68 E-value=0.025 Score=60.44 Aligned_cols=41 Identities=17% Similarity=0.053 Sum_probs=31.8
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
+.+++|..+.......+...+..+...++|+. +|+||+-..
T Consensus 107 D~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD~~ 147 (704)
T 2rdo_7 107 DGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDRM 147 (704)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCCcc
Confidence 47888888776666777888888888888865 789998654
No 84
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.66 E-value=0.011 Score=52.88 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=33.8
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHH-HcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la-~~g~~vllvd~Dp 124 (413)
...++++.|..|+||||++..|+..+. ..|.++.++|.|.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 344566669999999999999999998 7899999999763
No 85
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.63 E-value=0.013 Score=52.11 Aligned_cols=40 Identities=25% Similarity=0.295 Sum_probs=34.5
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
..++.+.|..|+||||++..|+..+...|.+|.+++.|..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 3566677999999999999999999888899999988853
No 86
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=95.60 E-value=0.12 Score=53.15 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=37.5
Q ss_pred cEEEEE-cCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 86 RKHYML-GGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 86 ~~i~~~-s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
+.|+|. +--.++||+.+++.|+..|.++|+||..+=.||.-|
T Consensus 13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n 55 (550)
T 1vco_A 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVN 55 (550)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSC
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeecccccc
Confidence 567888 558999999999999999999999999999998644
No 87
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.60 E-value=0.017 Score=55.15 Aligned_cols=39 Identities=26% Similarity=0.396 Sum_probs=33.5
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
.+++++ |.+|+||||+...||..+...+.+|++.+.|..
T Consensus 101 ~vi~lv-G~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 101 AVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp EEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred cEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 455555 789999999999999999988999999998854
No 88
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.58 E-value=0.016 Score=50.73 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=33.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
+++++|..|+||||+...|...+...|++|..+..|+.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 55566899999999999999999999999999998864
No 89
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.54 E-value=0.008 Score=54.48 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=40.9
Q ss_pred CcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHH------cCCCeeEEecCC
Q 043873 70 PRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFAN------HGHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~------~g~~vllvd~Dp 124 (413)
...+++.++.++.+. ...++.+.|.+|+||||++.+++...+. .+.+|+.++.+.
T Consensus 6 i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 6 ITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp ECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred ecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 346778899998642 2335555699999999999999986543 367889998764
No 90
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.51 E-value=0.016 Score=51.39 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=32.5
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++.|..|+||||++..||..+...|..+..+|.|.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 345556699999999999999999987788778899773
No 91
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.40 E-value=0.013 Score=51.75 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=30.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.+++.|.+|+||||++..++..+...|.+++.+++
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 44556999999999999999999998999988765
No 92
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.39 E-value=0.022 Score=55.80 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=33.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
+.+++++ |.+|+||||+...||..+...+.+|++.+.|..
T Consensus 157 g~vi~lv-G~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 157 PAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196 (359)
T ss_dssp SEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred CeEEEEE-cCCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence 3455555 789999999999999999988999999998854
No 93
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.35 E-value=0.011 Score=51.39 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=30.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..|+..+...|.+.-++|.|
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 567779999999999999999998888766677754
No 94
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.32 E-value=0.012 Score=54.39 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=32.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHH-----cCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFAN-----HGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~-----~g~~vllvd~Dp 124 (413)
+.++.+.|..|+||||+|..|+..+.. .|++|+++|+|-
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~ 65 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS 65 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCc
Confidence 456667799999999999999987753 367899999994
No 95
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.29 E-value=0.031 Score=52.67 Aligned_cols=52 Identities=15% Similarity=0.305 Sum_probs=39.3
Q ss_pred cccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEecCC
Q 043873 73 TVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVISTDP 124 (413)
Q Consensus 73 ~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~Dp 124 (413)
++..++.+..+ ...-++++.|.+|+||||++.++|..++.. |.+|++++.+.
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 44566665533 222355566999999999999999999876 88999998874
No 96
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.23 E-value=0.018 Score=49.81 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=31.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
++++.|..|+||||++..|+..+...|.+++.+|.|.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 4556699999999999999999887899998888774
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.23 E-value=0.017 Score=50.04 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=29.0
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHH-HcCCCeeEEe
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVIS 121 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la-~~g~~vllvd 121 (413)
..+++.|.+|+||||++..++..+. ..|.+|+.++
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3556669999999999999999997 7788887754
No 98
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.23 E-value=0.015 Score=52.20 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=31.4
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
.+|+++ |.+||||||+..+++..+... +++..|+.|++.
T Consensus 39 ~~i~iv-G~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~ 77 (226)
T 2hf9_A 39 VAFDFM-GAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIA 77 (226)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTT
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCC
Confidence 444444 889999999999999887655 789999998753
No 99
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.19 E-value=0.011 Score=56.76 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=42.0
Q ss_pred CcccccchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHH------------HcC----CCeeEEecCC
Q 043873 70 PRETVAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFA------------NHG----HPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la------------~~g----~~vllvd~Dp 124 (413)
...++..++.++.+ ....++++.|.+|+||||++.++|...+ +.| .+|++||++-
T Consensus 80 i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~ 152 (322)
T 2i1q_A 80 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG 152 (322)
T ss_dssp ECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred ecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence 44678899999964 2345667779999999999999998743 235 6888888863
No 100
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.18 E-value=0.011 Score=56.23 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=31.5
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
.++.++|..|+||||+|..|+..+...|.++.+||+|--+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3556669999999999999999888888999999999644
No 101
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.03 E-value=0.013 Score=50.48 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=27.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++++|-.|+||||++..||..+ +...+.++.|
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence 367778999999999999988765 4566667776
No 102
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.99 E-value=0.028 Score=51.30 Aligned_cols=35 Identities=14% Similarity=0.007 Sum_probs=32.5
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.+.++.|..|+||||.+..++..++.+|++|+++.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 47788899999999999999999999999999994
No 103
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=94.91 E-value=0.035 Score=51.79 Aligned_cols=53 Identities=4% Similarity=-0.051 Sum_probs=43.1
Q ss_pred cccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 71 RETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 71 ~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..++++||+++.++ ...+++++|-+|.||||++.+++...+++|.+++++..+
T Consensus 4 ~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~ 58 (260)
T 3bs4_A 4 SWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSIS 58 (260)
T ss_dssp CCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred ccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEe
Confidence 45789999999873 334555566667777799999999999999999999998
No 104
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.89 E-value=0.023 Score=58.81 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=34.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++.|..|+||||++..|+..+..+|+++.++|.|.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 356677799999999999999999999999999999883
No 105
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.85 E-value=0.023 Score=48.65 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=26.9
Q ss_pred cchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHH
Q 043873 75 AGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFAN 112 (413)
Q Consensus 75 ~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~ 112 (413)
..+...+.......+++.|..|+||||++..++..+..
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444433334456699999999999999998876
No 106
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.80 E-value=0.034 Score=48.33 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=28.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
++++.|..|+||||++..|+..+...|..++..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4566699999999999999999988898876554
No 107
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.71 E-value=0.011 Score=57.05 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=37.0
Q ss_pred ccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 72 ETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 72 ~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.++++++.++.+ ....++++.|.+|+||||+|.++|.. .|.+|+.+++
T Consensus 108 TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 108 GCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp SBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred cCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 566777777721 12334567799999999999999986 7889999998
No 108
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.67 E-value=0.036 Score=48.36 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=29.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++++.|-.|+||||++..|+..+...|.+|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 45667999999999999999999999999876654
No 109
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.63 E-value=0.044 Score=49.69 Aligned_cols=53 Identities=32% Similarity=0.585 Sum_probs=39.3
Q ss_pred cccccchHHhhcC---CCcEEEEEcCCCCccHHHHHHHHHHHHH-HcCCCeeEEecCC
Q 043873 71 RETVAGFDEMVAG---TQRKHYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVISTDP 124 (413)
Q Consensus 71 ~~~~~~~~~~~~~---~~~~i~~~s~kgGvGKtT~a~~lA~~la-~~g~~vllvd~Dp 124 (413)
..++..++.++.+ .+. ++.+.|.+|+||||+...++.... ..+.++++++.+.
T Consensus 13 ~tg~~~lD~~l~Ggi~~G~-~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 13 KSGIPGFDELIEGGFPEGT-TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp CCSCTTTGGGTTTSEETTC-EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred ecCCHhHHHHhcCCCCCCc-EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 3456677777742 334 444459999999999999997666 7788899988763
No 110
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.57 E-value=0.029 Score=49.39 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=31.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+.++.|..|+||||.+..++..+..+|++|+++-.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~ 39 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKP 39 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence 66777999999999999999999999999998753
No 111
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.56 E-value=0.032 Score=47.73 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=26.8
Q ss_pred chHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHc
Q 043873 76 GFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANH 113 (413)
Q Consensus 76 ~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~ 113 (413)
.+...+.......+++.|..|+||||++..++..+...
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~ 70 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQG 70 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhc
Confidence 33334433333344677999999999999999988763
No 112
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.48 E-value=0.029 Score=48.14 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=26.3
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+.++++.|.+|+||||++..|+.. ......++.|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d 35 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRD 35 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHH
Confidence 457778899999999999988762 2346777776
No 113
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.39 E-value=0.036 Score=52.94 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=31.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHH-HcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la-~~g~~vllvd~D 123 (413)
-+++.|..|+|||+++..+|..+. +.|++|+.+.+.
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 445569999999999999999999 999999988763
No 114
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.25 E-value=0.037 Score=64.12 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=47.5
Q ss_pred CCcccccchHHhhc-C--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 69 TPRETVAGFDEMVA-G--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 69 ~~~~~~~~~~~~~~-~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
....++..|+.++. + ....++++.|.+|+||||++.++|...++.|.+|++||++-..
T Consensus 363 ~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~ 423 (1706)
T 3cmw_A 363 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (1706)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred eeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 34567889999997 3 2334666669999999999999999999999999999998543
No 115
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.23 E-value=0.029 Score=52.42 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFAN 112 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~ 112 (413)
++.+.|.+|+||||++.+++..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5555599999999999999997663
No 116
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.17 E-value=0.058 Score=47.86 Aligned_cols=35 Identities=11% Similarity=-0.096 Sum_probs=32.4
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.+.++.|.-|+||||.+..+|..+..+|++|+++-
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 47788899999999999999999999999999995
No 117
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.15 E-value=0.04 Score=63.86 Aligned_cols=57 Identities=18% Similarity=0.200 Sum_probs=46.6
Q ss_pred CCcccccchHHhhc-C--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 69 TPRETVAGFDEMVA-G--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 69 ~~~~~~~~~~~~~~-~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
....++..|+.++. + ....++++.|.+|+||||++.++|..+++.|.+|+++++.-.
T Consensus 712 ~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees 771 (1706)
T 3cmw_A 712 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 771 (1706)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred ccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 34567889999997 3 233456666999999999999999999999999999999843
No 118
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.14 E-value=0.045 Score=46.36 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=30.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++.|..|+||||++..++..+...|+++..++..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 344569999999999999999988889889888864
No 119
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.04 E-value=0.028 Score=55.84 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=41.5
Q ss_pred CCcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHH------cCCCeeEEecC
Q 043873 69 TPRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFAN------HGHPTIVISTD 123 (413)
Q Consensus 69 ~~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~------~g~~vllvd~D 123 (413)
....++..|+.++.++ ..-++.+.|.+|+||||++.+++..... .+.+|+++|..
T Consensus 159 ~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 159 CLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp EECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred ccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 3456889999999652 2335555699999999999999877654 35679999875
No 120
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.98 E-value=0.052 Score=56.98 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=34.2
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..++++.|-.|+||||++..|+..|.+.|.++..+|.|
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 45677789999999999999999999999999999876
No 121
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.96 E-value=0.045 Score=56.94 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=34.5
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcC-CCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHG-HPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g-~~vllvd~Dp 124 (413)
..++++.|-.|+||||+|..|+..|..+| +++.++|.|.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 35677789999999999999999999888 8999999873
No 122
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.93 E-value=0.043 Score=64.53 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=45.6
Q ss_pred CcccccchHHhhc-C--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 70 PRETVAGFDEMVA-G--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~-~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
...+...++.++. + ....++++.|.+|+|||++|.++|....++|.+|+++|++-
T Consensus 1408 isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1408 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp ECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred ccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 4457788999988 4 23446666699999999999999999999999999999873
No 123
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.82 E-value=0.057 Score=47.55 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=27.6
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.++++.|-.|+||||++..|+..+...| +|+..+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~ 38 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTE 38 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEec
Confidence 4667779999999999999999887777 665444
No 124
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.81 E-value=0.065 Score=47.40 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=29.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
++++.|-.|+||||++..|+..+...|..|..++
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 5666799999999999999999998899886554
No 125
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=93.77 E-value=1.5 Score=44.78 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=36.9
Q ss_pred cEEEEEcC-CCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 86 RKHYMLGG-KGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 86 ~~i~~~s~-kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
|-|.|++| -.|.||-.+|+.++.-|..+|+||-.+-.||-=|
T Consensus 4 k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpyln 46 (535)
T 3nva_A 4 KYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYIN 46 (535)
T ss_dssp EEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSS
T ss_pred eEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCccee
Confidence 55777776 4999999999999999999999999999998544
No 126
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=93.77 E-value=1 Score=41.48 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=38.9
Q ss_pred CCCcEEEEEcCC-CCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 83 GTQRKHYMLGGK-GGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 83 ~~~~~i~~~s~k-gGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
..+|-|.|++|- .|.||-.+|+.++.-|..+|++|-.+-.||.=|
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlN 66 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYIN 66 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBCC
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCcee
Confidence 356777777774 999999999999999999999999999998544
No 127
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=93.77 E-value=0.55 Score=43.57 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=39.0
Q ss_pred CCCcEEEEEcC-CCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 83 GTQRKHYMLGG-KGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 83 ~~~~~i~~~s~-kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
..+|-|.|++| -.|.||=.+|+.++.-|..+|+||-++-.||.=|
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlN 66 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYIN 66 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSC
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeeccccee
Confidence 45676777766 6999999999999999999999999999998644
No 128
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.73 E-value=0.055 Score=55.62 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=34.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.++++.|-+|+||||+|..||..+...+.++.+++.|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D 72 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVG 72 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence 356777789999999999999999998889999999988
No 129
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.71 E-value=0.046 Score=47.31 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+..++++.|..|+||||++..|+..+ | ..++|+|
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 34567777999999999999988765 3 4567775
No 130
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.67 E-value=0.044 Score=46.59 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=25.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
++++.|..|+||||++..|+..+ |. -++|.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l---~~--~~i~~d~ 34 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL---KY--PIIKGSS 34 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---CC--CEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--eeecCcc
Confidence 56677999999999999988765 43 4678874
No 131
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=93.67 E-value=0.14 Score=52.76 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=32.3
Q ss_pred CceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 313 ATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 313 ~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
.+.+++|..+.......++..++.+...++|+ -+|+|++-..
T Consensus 106 aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipi-ivviNK~Dl~ 147 (529)
T 2h5e_A 106 VDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI-LTFMNKLDRD 147 (529)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTTTTCCE-EEEEECTTSC
T ss_pred CCEEEEEEeCCccchHHHHHHHHHHHHcCCCE-EEEEcCcCCc
Confidence 35788888777655667788888888889984 6889998654
No 132
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.66 E-value=0.038 Score=47.87 Aligned_cols=31 Identities=35% Similarity=0.383 Sum_probs=24.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..||..+ |. -++|+|
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l---~~--~~i~~d 37 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT---KR--ILYDSD 37 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--CEEECh
Confidence 45566899999999999998776 43 456766
No 133
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.64 E-value=0.042 Score=48.49 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=25.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
++++.|..|+||||++..|+..+ | ..++|.|.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~ 51 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDA 51 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCc
Confidence 55667999999999999998876 4 45778774
No 134
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.63 E-value=0.045 Score=51.67 Aligned_cols=35 Identities=34% Similarity=0.525 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..+++++|.+|+||||++..|+..+ +.....||+|
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D 67 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDND 67 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Confidence 4688889999999999999987654 2356788887
No 135
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.55 E-value=0.052 Score=47.16 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..++++.|-.|+||||++..|+..+ |.. ++|.|
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l---~~~--~i~~D 37 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL---RLP--LLSKD 37 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc---CCe--EecHH
Confidence 3567778999999999999998876 544 45655
No 136
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.51 E-value=0.051 Score=50.11 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++.|.+|+||||++..|+..+ +..+.++|.|.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~ 67 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDS 67 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence 3567778999999999999988765 44678889984
No 137
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.46 E-value=0.037 Score=46.90 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=21.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCee
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTI 118 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vl 118 (413)
++++.|..|+||||++..| .+.|..++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 5667799999999999988 55676643
No 138
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.39 E-value=0.051 Score=48.53 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHH-----HcC-CCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFA-----NHG-HPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la-----~~g-~~vllvd~D 123 (413)
..|.++.|.+|+|||+.|..++..++ +.| ++|.+...|
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 34777889999999999999877765 677 566555554
No 139
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.34 E-value=0.073 Score=49.17 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=25.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
++++.|..|+||||+|..||..+ | ..+++.|-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~---~--~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET---G--WPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---C--CCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC---C--CeEEeccH
Confidence 56677999999999999998765 3 45678874
No 140
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.32 E-value=0.067 Score=47.22 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=26.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++++.|..|+||||++..|+..+ | ..++|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~ 62 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADA 62 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---C--CeEEcccc
Confidence 355566999999999999999877 4 46778774
No 141
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.32 E-value=0.062 Score=47.96 Aligned_cols=54 Identities=26% Similarity=0.257 Sum_probs=38.6
Q ss_pred CcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHH------cCCCeeEEecC
Q 043873 70 PRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFAN------HGHPTIVISTD 123 (413)
Q Consensus 70 ~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~------~g~~vllvd~D 123 (413)
...++..++.++.+. ..-++.+.|..|+||||++..++..+.. .+.+++.++.+
T Consensus 7 i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 7 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp ECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred cCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 345778888888542 2335555699999999999999986654 24567777765
No 142
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.26 E-value=0.074 Score=54.46 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=33.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHH-c-CCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFAN-H-GHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~-~-g~~vllvd~Dp 124 (413)
.++++.|-.|+||||++..||..|.. + |+.+-++|.|.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 56777899999999999999999987 6 46788999986
No 143
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.26 E-value=0.064 Score=63.03 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=46.5
Q ss_pred CcccccchHHhhc-C--CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 70 PRETVAGFDEMVA-G--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 70 ~~~~~~~~~~~~~-~--~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
...++..|+.++. + ....++++.|.+|+||||++.++|...++.|.+|+++|+.-.
T Consensus 364 I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s 422 (2050)
T 3cmu_A 364 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 422 (2050)
T ss_dssp ECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred eeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCC
Confidence 4567889999987 3 233466666999999999999999999999999999999853
No 144
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.18 E-value=0.046 Score=47.96 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=33.4
Q ss_pred ccchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 74 VAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 74 ~~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
...+..++.......+++.|.+|+|||+++..++..+...+.++.++..+
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~ 75 (226)
T 2chg_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (226)
T ss_dssp HHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence 34455555543222256679999999999999999987766554444433
No 145
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.16 E-value=0.092 Score=46.32 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=29.4
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.++++.|-.|+||||++..|+..+...+..|.++.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 35666799999999999999999988888885544
No 146
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.15 E-value=0.049 Score=46.49 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=24.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..||..+ |. -++|+|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL---GY--EFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CC--cEEccc
Confidence 45666999999999999998866 43 467776
No 147
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.11 E-value=0.097 Score=47.62 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=34.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEecCCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVISTDPAH 126 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~Dp~~ 126 (413)
..++++.|-.|+||||++..|+..|.. .|++|.++.-.|..
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 457777899999999999999999999 99999885555654
No 148
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.05 E-value=0.064 Score=52.18 Aligned_cols=55 Identities=25% Similarity=0.260 Sum_probs=40.4
Q ss_pred CcccccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHH---c---CCCeeEEecCC
Q 043873 70 PRETVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFAN---H---GHPTIVISTDP 124 (413)
Q Consensus 70 ~~~~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~---~---g~~vllvd~Dp 124 (413)
...++.+++.++... ...++.+.|..|+||||++.+++...+. . |.+|+.||...
T Consensus 113 isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 113 ISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp ECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred ecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 345778899988642 3345555599999999999999988743 2 35889998753
No 149
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.01 E-value=0.035 Score=48.12 Aligned_cols=31 Identities=32% Similarity=0.424 Sum_probs=24.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||+|..||..+ |. .++|+|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g~--~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL---GV--GLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH---TC--CEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CC--CEEeCc
Confidence 35566999999999999998866 44 467877
No 150
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.87 E-value=0.08 Score=51.33 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
+.++++.|..|+||||+|..||..+ .+.+|++|..
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l-----~~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKF-----NGEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT-----TEEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHc-----CCceeccccc
Confidence 4577788999999999999998865 3789999953
No 151
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.84 E-value=0.077 Score=45.94 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=24.9
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++.|..|+||||+|..|+..+ |. .++|+|
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 466777999999999999988765 43 457766
No 152
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.83 E-value=0.034 Score=49.32 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=30.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++++.|..|+||||++..|+..+...|.+|.++..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 45667999999999999999999888888888764
No 153
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.81 E-value=0.13 Score=51.69 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=30.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCC-CeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGH-PTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~-~vllvd~ 122 (413)
.+++.|.+|+||||++..++..+.+.|. +|+++-.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~ 82 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAP 82 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecC
Confidence 6677799999999999999999999987 6777643
No 154
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.77 E-value=0.1 Score=49.72 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=30.7
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|..|+||||++..++..+...|.+++.++++
T Consensus 40 lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 44559999999999999999999889999999865
No 155
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.77 E-value=0.13 Score=46.42 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=32.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
.++++.|-.|+||||.+..|+..|...|++|.+.. .|..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~-~p~~ 45 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR-EPGG 45 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE-SSCS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc-CCCC
Confidence 46777899999999999999999999999996654 3543
No 156
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.70 E-value=0.093 Score=50.80 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=30.9
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHc--------CCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANH--------GHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~--------g~~vllvd~D 123 (413)
..+++.|.+|+||||++..++..+.+. +..++.+++.
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 366677999999999999999998776 7788888854
No 157
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.66 E-value=0.14 Score=45.37 Aligned_cols=38 Identities=29% Similarity=0.480 Sum_probs=31.6
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++.+.|..|+||||++..|+..+...|.++..|..|.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 35555699999999999999999887687888888874
No 158
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.63 E-value=0.23 Score=47.16 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=26.4
Q ss_pred ceEEEEecCccchHHHHHHH-HHHHHhcCCCcceEEEecccC
Q 043873 314 TEFVIVTIPTVMAISESSRL-HASLRKECIPVQRLIVNQVLP 354 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~-~~~l~~~gi~v~gvVvN~v~~ 354 (413)
+.+++|..+......+.... ++.++..++|+. +|+|++--
T Consensus 94 D~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvi-lV~NK~Dl 134 (308)
T 3iev_A 94 DVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI-VVINKIDK 134 (308)
T ss_dssp SEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEE-EEEECGGG
T ss_pred CEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEE-EEEECccC
Confidence 46777777664433334445 788888777754 78899764
No 159
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.60 E-value=0.06 Score=46.28 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=24.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..||..+ | ..++|.|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL---D--LVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---C--CCEEccc
Confidence 34556999999999999998765 3 4577876
No 160
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.44 E-value=0.18 Score=45.46 Aligned_cols=36 Identities=14% Similarity=-0.028 Sum_probs=33.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
..|.|+.|.-|.||||.+..++..+..+|++|+++-
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 357788899999999999999999999999999986
No 161
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.43 E-value=0.12 Score=49.89 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=31.5
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHc------CCCeeEEecCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANH------GHPTIVISTDPAH 126 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~------g~~vllvd~Dp~~ 126 (413)
..+++.|.+|+||||++..++..+... +..++.+++....
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRE 90 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCC
Confidence 356667999999999999999998765 6677778765433
No 162
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.39 E-value=0.057 Score=45.19 Aligned_cols=33 Identities=21% Similarity=0.072 Sum_probs=27.0
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.|..|+|||++|..++....+.+..++ +++.
T Consensus 28 ll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 28 WLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp EEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred EEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 44599999999999999887777777777 8765
No 163
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.39 E-value=0.077 Score=46.80 Aligned_cols=31 Identities=35% Similarity=0.508 Sum_probs=24.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..||..+ |.. ++|.|
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l---~~~--~i~~d 57 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL---NVP--FIDLD 57 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---CCC--EEcch
Confidence 45556999999999999999877 443 56766
No 164
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.38 E-value=0.12 Score=54.55 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=31.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+.++.|.+|+|||++.+++...+.++|.+||++-.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 67777999999999999999999999999988864
No 165
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.38 E-value=0.085 Score=45.93 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=24.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..||..+ .| .-++|+|
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l--~g--~~~id~d 43 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAEL--DG--FQHLEVG 43 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence 55666999999999999888752 13 5678887
No 166
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.34 E-value=0.13 Score=49.44 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=32.3
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHH--cCCCeeEEecCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFAN--HGHPTIVISTDPA 125 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~--~g~~vllvd~Dp~ 125 (413)
..++-+.|..|+||||++..|+..+.. .+.+|.++..|..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 346666799999999999999888764 3568999999953
No 167
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.28 E-value=0.14 Score=44.44 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=30.4
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++.++ |..|+||||++..|+..+...|+++..|-.|.
T Consensus 3 ~~v~Iv-G~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIV-GTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEE-ESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 455555 58999999999999999999998887777664
No 168
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.26 E-value=0.15 Score=43.58 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=25.8
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++++.|..|+||||++..|+..+ | ..++|.|.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~ 41 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDF 41 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCcc
Confidence 355666999999999999998765 4 46778874
No 169
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.25 E-value=0.1 Score=45.86 Aligned_cols=33 Identities=42% Similarity=0.522 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..++++.|..|+||||++..|+..+ |.. ++|+|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 3466677999999999999998876 544 56664
No 170
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.17 E-value=0.13 Score=53.47 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=31.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.++++.|.+|+||||+...++..+...|++|+++-
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 36667799999999999999999999999999874
No 171
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.14 E-value=0.11 Score=49.07 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=31.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcC--CCeeEE-ecCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHG--HPTIVI-STDPA 125 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g--~~vllv-d~Dp~ 125 (413)
..++.+.|..|+||||++..|+..+...| .++..+ ..|..
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 44666679999999999999999998765 455545 98853
No 172
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.10 E-value=0.21 Score=48.43 Aligned_cols=41 Identities=24% Similarity=0.412 Sum_probs=34.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~s 127 (413)
.++.+.|.+|+||||+--.|...+...|.+|.++..||+..
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 45555699999999999999999988999999999998753
No 173
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.06 E-value=0.17 Score=44.82 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=30.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++++-|--|+||||.+..|+..|.++|++|++..-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 45677999999999999999999999999987653
No 174
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.02 E-value=0.11 Score=45.07 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=25.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++.|..|+||||++..|+.. .+...+.+|.|
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 35666799999999999988764 34456677776
No 175
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.92 E-value=0.096 Score=45.50 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=24.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..||..+ |. .++|+|
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l---~~--~~i~~d 41 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY---GY--THLSTG 41 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--eEEcHH
Confidence 55666999999999999998766 43 467766
No 176
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.90 E-value=0.08 Score=46.42 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=26.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++++.|-.|+||||++..|+..+ .|.+++.++.
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 55666999999999999998876 4677776654
No 177
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.82 E-value=0.066 Score=46.72 Aligned_cols=32 Identities=31% Similarity=0.397 Sum_probs=25.3
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++.|..|+||||++..||..+ | ..++|+|
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d 44 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTG 44 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence 356667999999999999998876 3 4567776
No 178
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.81 E-value=0.1 Score=44.19 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=23.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..|+..+ |. -++|+|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~~--~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---NI--PFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---TC--CEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CC--CEEECc
Confidence 35566999999999999998866 44 456776
No 179
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.81 E-value=0.18 Score=48.74 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=32.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEecCCCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVISTDPAHS 127 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~Dp~~s 127 (413)
.+++.|..|+||||++..++..+... +..++.+++....+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 55667999999999999999888776 67888888765443
No 180
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.79 E-value=0.12 Score=44.60 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=24.6
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++.|..|+||||++..||..+ | ...+|+|
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l---~--~~~i~~d 36 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL---G--FKKLSTG 36 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH---T--CEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---C--CeEecHH
Confidence 356667999999999999998765 4 3566765
No 181
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.76 E-value=0.088 Score=46.33 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=23.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.+.|..|+||||++..||. + | +-++|+|
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L---G--AYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T---T--CEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C---C--CEEEEcc
Confidence 344559999999999998887 4 4 5677776
No 182
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.73 E-value=0.18 Score=49.10 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=32.8
Q ss_pred cEEEEE--cCCCCccHHHHHHHHHHHHHHc------CCCeeEEecCCCCC
Q 043873 86 RKHYML--GGKGGVGKTSCAASLAVKFANH------GHPTIVISTDPAHS 127 (413)
Q Consensus 86 ~~i~~~--s~kgGvGKtT~a~~lA~~la~~------g~~vllvd~Dp~~s 127 (413)
...+++ .|.+|+||||++..++..+... +..++.+++....+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 346666 8999999999999999888764 66788888754443
No 183
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.70 E-value=0.11 Score=45.61 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=25.5
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..++++.|..|+||||++..|+..+ | ...+|+|
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~---g--~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY---S--FVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS---S--CEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---C--ceEEeHH
Confidence 3466777999999999999988654 4 4667776
No 184
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.66 E-value=0.081 Score=45.13 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=23.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..||..+ | ..++|+|
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l---~--~~~id~d 36 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL---N--MEFYDSD 36 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT---T--CEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---C--CCEEecc
Confidence 45556999999999999888765 3 3567776
No 185
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.59 E-value=0.12 Score=49.76 Aligned_cols=34 Identities=35% Similarity=0.406 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+.++++.|..|+||||++..||..+ ...+||+|.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccc
Confidence 4467778999999999999998754 378899984
No 186
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.59 E-value=0.095 Score=44.60 Aligned_cols=31 Identities=39% Similarity=0.487 Sum_probs=24.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|-.|+||||++..||..+ |.+ ++|+|
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l---g~~--~id~D 39 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL---KLE--VLDTD 39 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCC--EEECh
Confidence 55566999999999999988765 544 56776
No 187
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.59 E-value=0.13 Score=45.46 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..++...|..|+||||++..|+..+ | .-++|+|
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D 44 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVD 44 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECc
Confidence 4566667999999999999888754 5 5678988
No 188
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.53 E-value=0.092 Score=45.92 Aligned_cols=31 Identities=32% Similarity=0.306 Sum_probs=24.3
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++.+.|..|+||||++..||.. | ..++|+|
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~----g--~~~id~d 39 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW----G--YPVLDLD 39 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT----T--CCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC----C--CEEEccc
Confidence 45666699999999999888763 5 4577887
No 189
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=91.42 E-value=1.2 Score=43.77 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=33.0
Q ss_pred CceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 313 ATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 313 ~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
.+.+++|..+......++++.+..++..|+|..-+|+|++--.
T Consensus 90 aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 90 LDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence 3578888877766667778888888888888666889998654
No 190
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.33 E-value=0.22 Score=45.60 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=32.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~ 126 (413)
.++++.|-.|+||||.+..|+..|...|.++.++--.|.+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~ 67 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG 67 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC
Confidence 4667779999999999999999999999994444445543
No 191
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.32 E-value=0.14 Score=48.21 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=26.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.+++.|.+|+|||++|..+|..+ |.+++.+++
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 44555999999999999999887 788888875
No 192
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.23 E-value=0.11 Score=44.62 Aligned_cols=31 Identities=39% Similarity=0.504 Sum_probs=23.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..||..+ | ..++|.|
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~---~--~~~~~~d 43 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS---G--LKYINVG 43 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh---C--CeEEEHH
Confidence 44567999999999999998766 3 4456665
No 193
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.22 E-value=0.17 Score=48.03 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=30.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHH--HcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFA--NHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la--~~g~~vllvd~Dp 124 (413)
.++.+.|..|+||||++..|+..+. -.+.+|.+|++|-
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 3555569999999999999998776 3455799999884
No 194
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.12 E-value=0.19 Score=47.15 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=32.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..+++.|..|+||||+|..+|..+...+.++..+++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 35566699999999999999999988777888898763
No 195
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.04 E-value=0.13 Score=48.25 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+.++++.|-+|+||||++..|+..+ ....++|.|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D 35 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRD 35 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEeccc
Confidence 3567788999999999999887632 245677777
No 196
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=91.03 E-value=0.65 Score=43.94 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=26.7
Q ss_pred HhcCCCCceEEEEecCccchHHHHHHHHHHHHhc--CCCcceEEEecccCC
Q 043873 307 LFRDPDATEFVIVTIPTVMAISESSRLHASLRKE--CIPVQRLIVNQVLPP 355 (413)
Q Consensus 307 ~l~d~~~t~~vlVt~pe~~~~~ea~r~~~~l~~~--gi~v~gvVvN~v~~~ 355 (413)
.+.+. +.+++|..+....-...+.+++.++.. ++|+ -+|+|++--.
T Consensus 83 ~l~~a--d~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~-ilV~NK~Dl~ 130 (301)
T 1wf3_A 83 ALADV--NAVVWVVDLRHPPTPEDELVARALKPLVGKVPI-LLVGNKLDAA 130 (301)
T ss_dssp HTSSC--SEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCE-EEEEECGGGC
T ss_pred HHhcC--CEEEEEEECCCCCChHHHHHHHHHHhhcCCCCE-EEEEECcccC
Confidence 35553 467777665432223345666777776 6664 4778887543
No 197
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.89 E-value=0.18 Score=45.88 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=28.9
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHc----CCCeeEEecCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANH----GHPTIVISTDPA 125 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~----g~~vllvd~Dp~ 125 (413)
.++++.|-.|+||||.+..|+..|... |.+|.+.. .|.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r-ep~ 67 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR-EPG 67 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE-SSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec-CCC
Confidence 477778999999999999999999988 99996554 353
No 198
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.89 E-value=0.16 Score=48.89 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=30.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHc---CCCeeEEecCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANH---GHPTIVISTDP 124 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~---g~~vllvd~Dp 124 (413)
.+++.|.+|+||||++..++..+... +..++.+++..
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 55566999999999999999988776 77888888653
No 199
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.86 E-value=0.24 Score=44.91 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
..++++.|-.|+||||++..|+..+.. |..|+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 346677799999999999999999988 88886543
No 200
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.78 E-value=0.28 Score=46.83 Aligned_cols=35 Identities=34% Similarity=0.373 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+..+++++|..|+||||+|..||..+ ..-+|.+|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence 34577888999999999999998764 466888884
No 201
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.72 E-value=0.13 Score=45.28 Aligned_cols=31 Identities=29% Similarity=0.258 Sum_probs=23.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++.+.|..|+||||++..||. .|. .++|+|
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~----lg~--~~id~d 33 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD----LGV--PLVDAD 33 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT----TTC--CEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH----CCC--cccchH
Confidence 3556669999999999988875 464 457887
No 202
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.66 E-value=0.23 Score=50.83 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=38.9
Q ss_pred cccchHHhhcCC--CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 73 TVAGFDEMVAGT--QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 73 ~~~~~~~~~~~~--~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.+++.++.+. ..-++.+.|..|+||||++..++..+...|.+++.++..
T Consensus 266 g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 266 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 456677777642 223555569999999999999999988889898887754
No 203
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.64 E-value=0.2 Score=46.96 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=27.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCC----CeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGH----PTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~----~vllvd~ 122 (413)
-+++.|.+|+|||++|..+|..+...+. +++.+++
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 3555699999999999999999988665 5555553
No 204
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=90.62 E-value=0.33 Score=51.56 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=31.5
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
+.+++|..+......++...+..+...++|+. +|+|++-..
T Consensus 102 D~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~ 142 (691)
T 1dar_A 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDKT 142 (691)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTTST
T ss_pred CEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCcc
Confidence 47888888776666677788888888888865 789998654
No 205
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.43 E-value=0.21 Score=45.65 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..++++.|..|+||||+|..|+..+ | ...+++|
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~---g--~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH---C--YCHLSTG 61 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh---C--CeEEecH
Confidence 3466777999999999999998766 3 4556664
No 206
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.20 E-value=0.14 Score=44.89 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=25.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.+.|..|+||||++..||..+ | +-++|.|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l---g--~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL---G--VPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---T--CCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--Cceeccc
Confidence 55667999999999999998766 3 5677887
No 207
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=90.14 E-value=0.23 Score=49.69 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=30.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHc--CCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANH--GHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~--g~~vllvd~D 123 (413)
-+++.|.+|+||||++..+|..+... +.+++.+++.
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 44556999999999999999999876 8899988865
No 208
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.03 E-value=0.35 Score=43.50 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=31.6
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCC-CeeEEecCCCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGH-PTIVISTDPAHS 127 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~-~vllvd~Dp~~s 127 (413)
.++++.|-.|+||||.+..|+..|...|+ .|.+ .-.|.++
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~-~rep~~t 44 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF-TREPGGT 44 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE-EESSCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCccee-eeCCCCC
Confidence 36677799999999999999999999998 5644 4445443
No 209
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.00 E-value=0.14 Score=45.12 Aligned_cols=34 Identities=29% Similarity=0.256 Sum_probs=25.9
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++.+.|..|+||||++..|+..+ ..+.+++.|.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~----~~~~~i~~D~ 55 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHL----PNCSVISQDD 55 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS----TTEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc----CCcEEEeCCc
Confidence 355566999999999998876533 1688999995
No 210
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.93 E-value=0.25 Score=47.35 Aligned_cols=33 Identities=36% Similarity=0.383 Sum_probs=27.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+++++|..|+||||++..||..+ ..-+|++|.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCc
Confidence 467788999999999999988754 467889984
No 211
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.88 E-value=0.21 Score=45.09 Aligned_cols=31 Identities=32% Similarity=0.380 Sum_probs=24.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++.|..|+||||++..||..+ | ..++|+|
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 48 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF---C--VCHLATG 48 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence 45566999999999999999876 3 4566664
No 212
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.81 E-value=0.23 Score=44.03 Aligned_cols=30 Identities=33% Similarity=0.346 Sum_probs=22.7
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|..|+||||+|..|+..+ |. ..+|+|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY---EI--PHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CC--cEeeHH
Confidence 4456999999999999998765 43 456664
No 213
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.68 E-value=0.18 Score=46.38 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=29.1
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|..|+|||++|..++..+.+.+.+++.+++.
T Consensus 32 vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 32 VLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp EEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred EEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 34569999999999999998877777788888875
No 214
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.67 E-value=0.22 Score=48.15 Aligned_cols=33 Identities=39% Similarity=0.577 Sum_probs=27.4
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++++.|..|+||||++..||..+ ..-+||+|.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds 73 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDK 73 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC-----CCcEEcccc
Confidence 467778999999999999988754 467999995
No 215
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.64 E-value=0.16 Score=45.39 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=23.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++.|..|+||||++..||..+ |. -++|+|
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l---~~--~~i~~d 37 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY---GL--AHLSTG 37 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---Cc--eEEehh
Confidence 44556999999999999999877 43 456664
No 216
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=89.62 E-value=0.83 Score=48.50 Aligned_cols=41 Identities=12% Similarity=0.022 Sum_probs=30.2
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
+.+++|..+......+....+..+...++|+. +|+|++--.
T Consensus 100 D~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~Dl~ 140 (693)
T 2xex_A 100 DGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMDKL 140 (693)
T ss_dssp SEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTST
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECCCcc
Confidence 46788877766555667777888888888754 789998654
No 217
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.47 E-value=0.33 Score=43.33 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=28.9
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.++++-|--|+||||.+..|+..|. +|++|++.-
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 4677789999999999999999996 588887664
No 218
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=89.41 E-value=0.26 Score=43.45 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=26.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
++...|..|+||||++..|+..+.. ++.+++.|+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~ 41 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLGE---RVALLPMDH 41 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCc
Confidence 4444588999999999998887632 588999886
No 219
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.31 E-value=0.48 Score=45.67 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=33.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
.++.+.|.+|+||||+.-.++..+...+.+|.++..|++
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence 355556999999999999999988888999999999974
No 220
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.26 E-value=0.23 Score=44.10 Aligned_cols=30 Identities=37% Similarity=0.421 Sum_probs=23.0
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|..|+||||++..|+..+ |.. ++|+|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---g~~--~i~~d 32 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY---GIP--QISTG 32 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH---CCC--EEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCe--EEeHH
Confidence 3556999999999999998876 544 45554
No 221
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.24 E-value=0.14 Score=44.03 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=17.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCee
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTI 118 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vl 118 (413)
++++.|-.|+||||++..|+..+ |..++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence 56677999999999999887654 55544
No 222
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.15 E-value=0.28 Score=43.55 Aligned_cols=31 Identities=35% Similarity=0.382 Sum_probs=24.4
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++.|..|+||||++..|+. .| .-++|+|
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~----lg--~~~id~D 35 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD----LG--INVIDAD 35 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH----TT--CEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH----cC--CEEEEcc
Confidence 4667779999999999988865 45 4678887
No 223
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.91 E-value=0.49 Score=43.19 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=33.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
-.|.|+.|.-|.||||-+..++.....+|+||+++-
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 357888899999999999999999999999999998
No 224
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.87 E-value=0.26 Score=43.88 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=23.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..||..+ | ..++|+|
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 36 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF---H--AAHLATG 36 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---C--ceEEehh
Confidence 45566999999999999998876 3 3466664
No 225
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.82 E-value=0.38 Score=44.76 Aligned_cols=32 Identities=34% Similarity=0.416 Sum_probs=26.0
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|.+|+|||++|..+|..+ +.++..+++.
T Consensus 53 vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~ 84 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIARRLAKLA---NAPFIKVEAT 84 (310)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEEcch
Confidence 3445999999999999999877 6678878764
No 226
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.70 E-value=0.25 Score=44.37 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=24.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..|+..+ |. ..+++|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l---g~--~~i~~d 32 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY---SL--AHIESG 32 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CC--eEEchH
Confidence 45667999999999999998876 43 456664
No 227
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.57 E-value=0.29 Score=42.53 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++++.|..|+||||++..||..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 34566999999999999999876
No 228
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.49 E-value=0.3 Score=45.75 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..++++.|..|+||||+|..|+ . .|. -+||+|
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~---lg~--~~id~D 106 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-N---LGA--YIIDSD 106 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-H---HTC--EEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-H---CCC--cEEehh
Confidence 3466677999999999999998 3 364 568887
No 229
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.45 E-value=0.25 Score=43.80 Aligned_cols=30 Identities=33% Similarity=0.438 Sum_probs=22.3
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|..|+||||+|..||..+ | ...+|+|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~---~--~~~i~~d 32 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY---G--IPHISTG 32 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS---S--CCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---C--CcEEeHH
Confidence 3456999999999999987654 4 4556664
No 230
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=88.29 E-value=0.94 Score=45.43 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=41.5
Q ss_pred CcEEEEEcC---CCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhcccC
Q 043873 85 QRKHYMLGG---KGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLS 137 (413)
Q Consensus 85 ~~~i~~~s~---kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~~~~ 137 (413)
.+.|+|++- +-|.||||++.-|+.+|.+.|+++.+. =+|+|+.-.||....
T Consensus 43 GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~--lRePSlGP~FGiKGG 96 (543)
T 3do6_A 43 GKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVT--LREPSLGPTLGLKGG 96 (543)
T ss_dssp CEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE--ECCCCHHHHHHSCCS
T ss_pred CeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEE--EecCCCCCcCCcccc
Confidence 466666543 689999999999999999999998553 278999999998753
No 231
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.27 E-value=0.42 Score=48.15 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=32.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.++++.|-.|+||||++..|+..+...+..+..++.|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d 76 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence 355667779999999999999999998878887777755
No 232
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.26 E-value=0.2 Score=44.93 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=24.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++.|..|+||||++..||..+ | ...+|+|
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l---~--~~~i~~d 39 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF---E--LKHLSSG 39 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS---S--SEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---C--CeEEech
Confidence 355666999999999999988754 4 3466665
No 233
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=88.17 E-value=0.4 Score=50.10 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=27.9
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHH----cCCCeeEE
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFAN----HGHPTIVI 120 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~----~g~~vllv 120 (413)
.++++.|.+|+||||+...+...+.+ .|.+|+++
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 46777899999999999999988874 45677775
No 234
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.15 E-value=0.5 Score=42.86 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=25.5
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|.+|+|||++|..+|..+ +.++..+++.
T Consensus 42 vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~ 73 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGA 73 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH---TCCEEEEETT
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEechH
Confidence 4566999999999999998765 6677777764
No 235
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.11 E-value=0.24 Score=44.23 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=23.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..||..+ | ...+|+|
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l---~--~~~i~~d 37 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY---Q--LAHISAG 37 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH---C--CEECCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence 45566999999999999998876 3 2455654
No 236
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.69 E-value=0.52 Score=46.12 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=29.7
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.|..|+||||+...++..+...|.+|+++|-+
T Consensus 39 ~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 39 TILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3349999999999999999998899999998755
No 237
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.66 E-value=0.39 Score=43.17 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=25.0
Q ss_pred chHHhhcCCC-cEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 76 GFDEMVAGTQ-RKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 76 ~~~~~~~~~~-~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.+..++.+.+ +.-+++.|.+|+||||+|..+|..+
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444422 3345667999999999999999887
No 238
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.57 E-value=0.67 Score=44.36 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCCccHHHHHHHHHHHHHHc
Q 043873 83 GTQRKHYMLGGKGGVGKTSCAASLAVKFANH 113 (413)
Q Consensus 83 ~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~ 113 (413)
+.....++++|++|+|||+++..++..+.+.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3333455677999999999999999999753
No 239
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=87.55 E-value=0.35 Score=48.76 Aligned_cols=49 Identities=24% Similarity=0.356 Sum_probs=30.8
Q ss_pred cchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHH-------cCCCeeEEecC
Q 043873 75 AGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFAN-------HGHPTIVISTD 123 (413)
Q Consensus 75 ~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~-------~g~~vllvd~D 123 (413)
..+...+....+.-+++.|.+|+|||+++..+|..+.. .|.+++-+|+.
T Consensus 190 ~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 33444443333323455699999999999999999875 35566655543
No 240
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=87.29 E-value=0.76 Score=42.25 Aligned_cols=35 Identities=31% Similarity=0.357 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
...-+++.|..|+|||++|..+|.. .|.+++.+++
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~---~~~~~~~i~~ 97 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE---SNFPFIKICS 97 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH---HTCSEEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH---hCCCEEEEeC
Confidence 3445666799999999999999886 3666666653
No 241
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=87.24 E-value=0.57 Score=42.57 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=27.0
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHc-----CCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANH-----GHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~-----g~~vllvd~Dp 124 (413)
.++-+.|..|+||||++..|+..+-.. ..++.+++.|.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 344555999999999999998876221 24566777763
No 242
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=87.22 E-value=0.5 Score=49.47 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=28.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEe
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVIS 121 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd 121 (413)
+.++.|.+|+||||+.+.++..+.+ .+.+|+++-
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a 231 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 231 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 5667799999999999999999887 677887765
No 243
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.21 E-value=0.23 Score=49.31 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++.|-+|+||||++..|+..+ ...+||.|.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 291 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDT 291 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccch
Confidence 4577777999999999999887643 356677764
No 244
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.92 E-value=0.62 Score=46.12 Aligned_cols=33 Identities=39% Similarity=0.580 Sum_probs=26.9
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+++++|..|+||||+|..||..+- .-+|++|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 4667789999999999999998763 35788884
No 245
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.82 E-value=0.28 Score=43.27 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++++.|..|+||||++..|+..+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 55666999999999999988765
No 246
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.57 E-value=0.43 Score=41.22 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=23.6
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++.|..|+||||++..|+. ..+ -...+|.|
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~---~~~-g~~~i~~d 35 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA---QLD-NSAYIEGD 35 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH---HSS-SEEEEEHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc---ccC-CeEEEccc
Confidence 3566679999999999999975 222 23566765
No 247
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=86.37 E-value=3.2 Score=43.94 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=26.0
Q ss_pred CceEEEEecCcc-chHHHHHHHHHHHHhcCCCcceEEEecccC
Q 043873 313 ATEFVIVTIPTV-MAISESSRLHASLRKECIPVQRLIVNQVLP 354 (413)
Q Consensus 313 ~t~~vlVt~pe~-~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~ 354 (413)
.+.+++|..++. .+..+...+.+.+...+.| .-+|+|++--
T Consensus 201 aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl 242 (695)
T 2j69_A 201 CHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQ 242 (695)
T ss_dssp SSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGG
T ss_pred CCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECccc
Confidence 357888887754 3444444444566666777 5688999753
No 248
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=86.33 E-value=0.43 Score=42.41 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVK 109 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~ 109 (413)
..+++++|..|+||||+...|+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 446677899999999999888754
No 249
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.13 E-value=0.61 Score=43.84 Aligned_cols=43 Identities=33% Similarity=0.340 Sum_probs=31.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhh
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFA 133 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg 133 (413)
.+++.|..|+||||+|..++..+ +.++..+++.......++++
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~~~l~~ 82 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKPGDLAA 82 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCChHHHHH
Confidence 34556999999999999998866 67788887765544444443
No 250
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.09 E-value=0.34 Score=42.45 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=25.4
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|..|+||||.|.+||.. |.+++.+++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecC
Confidence 345589999999999998754 7789998885
No 251
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=86.04 E-value=0.57 Score=45.47 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=25.5
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|..|+|||++|..+|..+ |.++..+++.
T Consensus 75 ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~ 106 (376)
T 1um8_A 75 ILLIGPTGSGKTLMAQTLAKHL---DIPIAISDAT 106 (376)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEecch
Confidence 4455999999999999999876 6777777753
No 252
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=86.01 E-value=0.44 Score=49.21 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=30.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcC-CCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHG-HPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g-~~vllvd~Dp 124 (413)
.++++.|..|+||||++..||..+...+ .++.++|.|.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 3555569999999999999999997654 5787899873
No 253
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.68 E-value=0.64 Score=41.92 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=19.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
|+++-|.+|+||+|.|..||..+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45555999999999999998765
No 254
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.59 E-value=0.76 Score=41.81 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=23.4
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+++.|..|+||||++..+|..+ +.+++.+++
T Consensus 48 vll~G~~GtGKT~la~~la~~~---~~~~~~i~~ 78 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA---KVPFFTISG 78 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH---TCCEEEECS
T ss_pred EEEECcCCCCHHHHHHHHHHHc---CCCEEEEeH
Confidence 3455999999999999998765 556655553
No 255
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.52 E-value=0.55 Score=41.30 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=21.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHc
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANH 113 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~ 113 (413)
.+++.|.+|+||||++..++..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 55667999999999999999877643
No 256
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=85.48 E-value=0.96 Score=43.06 Aligned_cols=40 Identities=23% Similarity=0.171 Sum_probs=31.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHc-C-CCeeEEecCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANH-G-HPTIVISTDPA 125 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~-g-~~vllvd~Dp~ 125 (413)
..++.+.|..|+||||++..|+..+... | .+|.+|..|..
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 3455556999999999999999888753 5 57888888753
No 257
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=85.18 E-value=0.47 Score=47.83 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=33.7
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCC-CeeEEecCCCCCchhhh
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGH-PTIVISTDPAHSLSDSF 132 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~-~vllvd~Dp~~sls~~l 132 (413)
+.+++++ |..|+||||+...|+-.+...+. +++++|.|++..+...+
T Consensus 138 Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vp 185 (460)
T 2npi_A 138 GPRVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVP 185 (460)
T ss_dssp CCCEEEE-ESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCS
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeec
Confidence 3445444 99999999999999887765544 66788888765544443
No 258
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.15 E-value=0.79 Score=43.44 Aligned_cols=42 Identities=26% Similarity=0.240 Sum_probs=30.3
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCCCCchhhhhc
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQ 134 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~~sls~~lg~ 134 (413)
++.|.+|+|||+++..+|..+ +.++..+.+.+.-...+++|.
T Consensus 50 ll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 50 LLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp EEESCCCHHHHHHHHHHHHHT---TCCEEEEECCTTCCHHHHHEE
T ss_pred EEECCCCCcHHHHHHHHHHHh---CCCeEEEecCCCCChhhcCCc
Confidence 344999999999999998765 667777777655444555543
No 259
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=85.13 E-value=0.71 Score=49.84 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=28.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEe
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVIS 121 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd 121 (413)
+.++.|.+|+||||+.+.++..+.+ .+.+|+++-
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a 407 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 407 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEc
Confidence 5677899999999999999999887 677887764
No 260
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.07 E-value=0.57 Score=47.79 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=27.9
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..+++.|..|+||||+|..+|..+ |..++-+++.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s 111 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNAS 111 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCC
Confidence 356677999999999999998876 7788777764
No 261
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=85.02 E-value=0.44 Score=48.95 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.1
Q ss_pred EEEEEcCCCCccHHHHHHHHHH
Q 043873 87 KHYMLGGKGGVGKTSCAASLAV 108 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~ 108 (413)
.++.+.|-||+||||+|..++.
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4555669999999999998885
No 262
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=85.00 E-value=0.35 Score=45.32 Aligned_cols=40 Identities=28% Similarity=0.408 Sum_probs=27.8
Q ss_pred cchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcC
Q 043873 75 AGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHG 114 (413)
Q Consensus 75 ~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g 114 (413)
..+..++......-+++.|.+|+||||++..++..+...+
T Consensus 35 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~ 74 (327)
T 1iqp_A 35 KRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN 74 (327)
T ss_dssp HHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc
Confidence 4445555443222266679999999999999999886544
No 263
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=84.72 E-value=0.46 Score=44.98 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=29.8
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++.|..|+|||++|..++....+.+.+.+.+++..
T Consensus 28 vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 28 VLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp EEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred EEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 344599999999999999987777788888898763
No 264
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=84.68 E-value=0.54 Score=41.60 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=18.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++++.|..|+||||++..|+..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 55667999999999998887654
No 265
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=84.63 E-value=0.54 Score=40.55 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=19.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++++.|..|+||||+...|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 55666999999999999987754
No 266
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.37 E-value=1.3 Score=43.27 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=28.0
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEec
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVIST 122 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~ 122 (413)
-++.+.|..|+||||+...++..+... ..+|++++-
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 355556999999999999999988765 456766663
No 267
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=84.37 E-value=0.67 Score=41.10 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=22.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.+.|..|+||||++..|+..+ | +-.+|+|
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~---g--~~~~d~g 37 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL---Q--WHLLDSG 37 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCcccCc
Confidence 34455999999999999988755 3 4456665
No 268
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=84.26 E-value=0.75 Score=41.03 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++.|+.++||.|+||+|+|-.+...+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 35577777999999999998776544
No 269
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=84.25 E-value=0.71 Score=42.59 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=23.4
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+++.|.+|+||||++..+|..+ +.++..+++
T Consensus 54 ~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~ 84 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATET---NATFIRVVG 84 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred EEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 4555999999999999887654 556666654
No 270
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.24 E-value=0.44 Score=44.56 Aligned_cols=47 Identities=15% Similarity=0.343 Sum_probs=30.9
Q ss_pred cchHHhhcCCC-cEEEEEcCCCCccHHHHHHHHHHHHHHcCCC--eeEEec
Q 043873 75 AGFDEMVAGTQ-RKHYMLGGKGGVGKTSCAASLAVKFANHGHP--TIVIST 122 (413)
Q Consensus 75 ~~~~~~~~~~~-~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~--vllvd~ 122 (413)
..+..++.... .. +++.|.+|+||||++..++..+...+.. ++-+++
T Consensus 31 ~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 31 DRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred HHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 34455554432 23 6667999999999999999988654333 444443
No 271
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.19 E-value=0.69 Score=41.26 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=17.8
Q ss_pred EEcCCCCccHHHHHHHHHHHH
Q 043873 90 MLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~l 110 (413)
++-|.+|+||+|.|..||..+
T Consensus 4 il~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 4 VFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 344999999999999998765
No 272
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=84.08 E-value=0.73 Score=47.42 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=31.8
Q ss_pred cchHHhhcC--CCcEEEEEcCCCCccHHHHHHHHHHHHH--HcC--CCeeEEecCC
Q 043873 75 AGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFA--NHG--HPTIVISTDP 124 (413)
Q Consensus 75 ~~~~~~~~~--~~~~i~~~s~kgGvGKtT~a~~lA~~la--~~g--~~vllvd~Dp 124 (413)
..+.+.+.. ....++++.|.||+||||+|..++.... ... ..|..++.+.
T Consensus 134 ~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 134 NAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp HHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred HHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 344445542 2344666779999999999999876532 222 2477777654
No 273
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=83.86 E-value=0.7 Score=43.62 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=33.4
Q ss_pred ccchHHhhcCC-CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 74 VAGFDEMVAGT-QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 74 ~~~~~~~~~~~-~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
...+..++... ...+++++|..|+||||++..+|..+ +.+++-+++.
T Consensus 35 ~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~ 82 (324)
T 3u61_B 35 KETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGS 82 (324)
T ss_dssp HHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETT
T ss_pred HHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccc
Confidence 34455555532 23467888999999999999998765 6677777753
No 274
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=83.83 E-value=0.75 Score=44.39 Aligned_cols=31 Identities=32% Similarity=0.365 Sum_probs=24.4
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+++.|.+|+|||++|..+|..+ |.+.+-+++
T Consensus 54 vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 54 ILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 3445999999999999998876 666666665
No 275
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=83.23 E-value=1 Score=48.69 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=29.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHH-cCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFAN-HGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~-~g~~vllvd~ 122 (413)
+.++.|.+|+|||++.+.++..+.+ .+.+|+++-.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~ 412 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAP 412 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 5666799999999999999988876 6889888864
No 276
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.99 E-value=0.55 Score=44.86 Aligned_cols=49 Identities=22% Similarity=0.331 Sum_probs=31.7
Q ss_pred cchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 75 AGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 75 ~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..+...+..+..--+++.|..|+||||++..+|..+...+.++.++..+
T Consensus 35 ~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 35 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 3444444443211156679999999999999999887554444455544
No 277
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=82.90 E-value=1.7 Score=42.16 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=31.8
Q ss_pred chHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEe
Q 043873 76 GFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVIS 121 (413)
Q Consensus 76 ~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd 121 (413)
.+..+...... ++.+.|..|+||||+...++..+... |.+++.++
T Consensus 114 ~l~~l~~~~~g-~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 114 VFKRVSDVPRG-LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp HHHHHHHCSSE-EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHhCCCC-EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 34444444444 56666999999999999999888765 55555444
No 278
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=82.83 E-value=0.74 Score=40.18 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=19.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHP 116 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~ 116 (413)
-+++.|..|+||||+|..|.. +|++
T Consensus 18 gvli~G~SGaGKStlal~L~~----rG~~ 42 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID----RGHQ 42 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH----TTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHH----cCCe
Confidence 445569999999999877654 6764
No 279
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.75 E-value=0.69 Score=50.26 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=28.2
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHH-------cCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFAN-------HGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~-------~g~~vllvd~D 123 (413)
+++.|.+|+||||++..+|..+.. .|.+++.+|+.
T Consensus 194 vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 235 (854)
T 1qvr_A 194 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG 235 (854)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH
Confidence 355599999999999999999876 47778877764
No 280
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=82.66 E-value=1.5 Score=40.44 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=27.0
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHc-CCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANH-GHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~-g~~vllvd~D 123 (413)
-++.+.|..|+||||+...++..+... ..++.+.+-+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 355556999999999999999887654 4456555433
No 281
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=82.62 E-value=1.5 Score=43.57 Aligned_cols=47 Identities=11% Similarity=0.235 Sum_probs=32.8
Q ss_pred chHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 76 GFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 76 ~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++.++... .-++.+.|..|+||||+...++..+.....+|.+++-+
T Consensus 158 ~L~~l~~~~-ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 158 NFRRLIKRP-HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp HHHHHHTSS-SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred HHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 344454433 34566669999999999999988776555567776644
No 282
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=82.38 E-value=0.95 Score=43.10 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=24.5
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++.|.+|+|||++|..+|..+ .+..++.+++.
T Consensus 48 iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~ 80 (322)
T 1xwi_A 48 ILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSS 80 (322)
T ss_dssp EEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECC
T ss_pred EEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhH
Confidence 3444999999999999998865 35566666653
No 283
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=82.19 E-value=1.1 Score=42.12 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=26.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..++..+ +.+++.+++.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~ 64 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLR 64 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEch
Confidence 66777999999999999888765 3468888875
No 284
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=82.16 E-value=0.86 Score=41.55 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=24.9
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++.+.|..|+||||++..||..+ | ..++|.|
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g 41 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTG 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---C--CCcccCC
Confidence 456667999999999999998776 3 4567766
No 285
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=82.15 E-value=1.6 Score=39.35 Aligned_cols=36 Identities=11% Similarity=-0.081 Sum_probs=31.8
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
-.|.|+.|--|+||||.....+..+..+|++|+++-
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 357777898999999999999999999999999994
No 286
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=82.13 E-value=0.78 Score=39.90 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=18.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++++.|..|+||||++..|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 45556999999999998887655
No 287
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.09 E-value=1.3 Score=41.93 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=26.7
Q ss_pred cchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHH
Q 043873 75 AGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFAN 112 (413)
Q Consensus 75 ~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~ 112 (413)
..+...+......-+++.|..|+||||++..+|..+..
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44555555441112566799999999999999999863
No 288
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=81.94 E-value=0.92 Score=41.10 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++++.|..|+||||++..|+..+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 44555999999999999998766
No 289
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=81.91 E-value=1 Score=41.82 Aligned_cols=32 Identities=31% Similarity=0.315 Sum_probs=23.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
-+++.|.+|+||||+|..+|..+ +....-+++
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 87 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATEC---SATFLNISA 87 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT---TCEEEEEES
T ss_pred eEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeH
Confidence 34555999999999999988754 455555554
No 290
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=81.79 E-value=2.8 Score=41.38 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=31.4
Q ss_pred ccccchHHhhc-CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCe
Q 043873 72 ETVAGFDEMVA-GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPT 117 (413)
Q Consensus 72 ~~~~~~~~~~~-~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~v 117 (413)
.+++.++-++. ..+.++.++ |..|+||||++..+|..+++.+..|
T Consensus 160 tGiraID~~~pi~rGQr~~Iv-G~sG~GKTtLl~~Iar~i~~~~~~v 205 (422)
T 3ice_A 160 LTARVLDLASPIGRGQRGLIV-APPKAGKTMLLQNIAQSIAYNHPDC 205 (422)
T ss_dssp HHHHHHHHHSCCBTTCEEEEE-CCSSSSHHHHHHHHHHHHHHHCTTS
T ss_pred ccceeeeeeeeecCCcEEEEe-cCCCCChhHHHHHHHHHHhhcCCCe
Confidence 35555555554 234556665 7789999999999999998865443
No 291
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=81.73 E-value=3.9 Score=42.05 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=37.2
Q ss_pred CceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCCC
Q 043873 313 ATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPS 356 (413)
Q Consensus 313 ~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~~ 356 (413)
.+++++|..+..-.-..+++.++.+.++++|+. +++|++-...
T Consensus 124 ~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~Dr~~ 166 (548)
T 3vqt_A 124 VDSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKMDREA 166 (548)
T ss_dssp CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSCC
T ss_pred cCceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEecccchh
Confidence 358899999998899999999999999999964 7899987643
No 292
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=81.41 E-value=0.59 Score=43.59 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=25.9
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCC--CeeEEecC
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGH--PTIVISTD 123 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~--~vllvd~D 123 (413)
+++.|..|+||||++..+|..+...+. .++-+++.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 566799999999999999998864433 34555543
No 293
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=81.37 E-value=1.8 Score=48.06 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=34.5
Q ss_pred cchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHH--HHH-cCCCeeEEecCCCCCc
Q 043873 75 AGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVK--FAN-HGHPTIVISTDPAHSL 128 (413)
Q Consensus 75 ~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~--la~-~g~~vllvd~Dp~~sl 128 (413)
..+.+++.. ....++.+.|.||+||||+|..++.. ... -...+..++.+...+.
T Consensus 138 eeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~ 195 (1221)
T 1vt4_I 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195 (1221)
T ss_dssp HHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSH
T ss_pred HHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCH
Confidence 344444432 22335556799999999999998853 232 3446888888765443
No 294
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=81.06 E-value=1.1 Score=43.22 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=23.3
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++.|.+|+|||++|..+|..+ +..++.+++
T Consensus 88 LL~GppGtGKT~la~ala~~~---~~~~~~v~~ 117 (355)
T 2qp9_X 88 LLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 117 (355)
T ss_dssp EEECSTTSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred EEECCCCCcHHHHHHHHHHHh---CCCEEEeeH
Confidence 344999999999999999876 556666654
No 295
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=80.98 E-value=1.2 Score=42.29 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=24.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
-+++.|.+|+|||++|..+|..+ +.++..+++
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 34555999999999999998764 566666654
No 296
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=80.94 E-value=1.3 Score=47.43 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=31.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++.|..|+|||++|..+|..+...+.+++-+|+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s 558 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS 558 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEech
Confidence 356669999999999999999998888899999875
No 297
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=80.71 E-value=0.82 Score=40.15 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=16.5
Q ss_pred EEEcCCCCccHHHHHHHHHH
Q 043873 89 YMLGGKGGVGKTSCAASLAV 108 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~ 108 (413)
+|++|+.|+||||+...|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999877644
No 298
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=80.59 E-value=1.1 Score=43.21 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=24.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
-+++.|..|+|||++|..+|..+ |..++.+++
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~ 150 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQS---GATFFSISA 150 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence 34455999999999999998654 667777765
No 299
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=80.49 E-value=0.96 Score=39.30 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=18.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++.+.|..|+||||++..|+..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 44555999999999999888654
No 300
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=80.47 E-value=0.65 Score=41.07 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=24.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..||..+ | .-++|+|
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~---g--~~~~~~d 35 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL---S--MIYVDTG 35 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT---T--CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--CceecCC
Confidence 45667999999999998887654 4 4578877
No 301
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=79.96 E-value=2.3 Score=37.63 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
-.+.|..|.-|+||||-..+.+.....+|++|+++..
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 3577888999999999999999999999999999973
No 302
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=79.90 E-value=1.1 Score=42.73 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=29.0
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
-+.+++|..|+||||+-..|.... .|+|+.+|.-|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~ 40 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEF 40 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecC
Confidence 366677999999999988877643 789999998874
No 303
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=79.65 E-value=1.4 Score=43.57 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=29.3
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+++++ |..|+|||+....+...+...|.+|+++|-
T Consensus 55 h~~i~--G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 55 HLLVN--GATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp CEEEE--ECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred eEEEE--CCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 44444 999999999988888888889999999874
No 304
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=79.46 E-value=1.1 Score=40.04 Aligned_cols=31 Identities=35% Similarity=0.613 Sum_probs=22.8
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..+++.|..|+||||+|..| +++|. -+|..|
T Consensus 35 ~~ilI~GpsGsGKStLA~~L----a~~g~--~iIsdD 65 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALEL----VQRGH--RLIADD 65 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHH----HTTTC--EEEESS
T ss_pred EEEEEECCCCCCHHHHHHHH----HHhCC--eEEecc
Confidence 34566699999999988665 45666 567777
No 305
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=79.29 E-value=1.2 Score=41.93 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=22.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.+++.|.+|+||||+|..+|..+ +...+.++
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~ 81 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANEC---QANFISIK 81 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred eEEEECCCCcCHHHHHHHHHHHh---CCCEEEEE
Confidence 34445999999999999998765 45555554
No 306
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=79.13 E-value=1.2 Score=42.63 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=19.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.+++.|.+|+||||++..+|..+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 34556999999999999999876
No 307
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=79.09 E-value=1.7 Score=42.12 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=23.2
Q ss_pred hcCCCcEEEEEcCCCCccHHHHHHHHHHHHH
Q 043873 81 VAGTQRKHYMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 81 ~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la 111 (413)
+..+....+++.|..|+||||++..||..+.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3333344455679999999999999998775
No 308
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=78.74 E-value=1.3 Score=47.43 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=25.3
Q ss_pred chHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHH
Q 043873 76 GFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFAN 112 (413)
Q Consensus 76 ~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~ 112 (413)
.+...+....+.-+++.|.+|+|||++|..+|..+..
T Consensus 191 ~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 3344443333323455699999999999999998743
No 309
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=78.69 E-value=1 Score=38.94 Aligned_cols=24 Identities=21% Similarity=0.476 Sum_probs=19.7
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la 111 (413)
++++.|..|+||||+...|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 345569999999999999887764
No 310
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=78.68 E-value=1.7 Score=41.19 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=26.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
-+++.|..|+|||++|..+|.. .+.++..+++..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~---~~~~~~~~~~~~ 90 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE---MSANIKTTAAPM 90 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH---TTCCEEEEEGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHH---hCCCeEEecchh
Confidence 3456699999999999998655 467777777653
No 311
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=78.55 E-value=1.1 Score=42.97 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la 111 (413)
.+++.|.+|+|||++|..+|..+.
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 556669999999999999998875
No 312
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=77.90 E-value=1.2 Score=44.57 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=24.8
Q ss_pred chHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 76 GFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 76 ~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.++..+......-+++.|.+|+||||+|..+|..+
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 44445544433345666999999999999998764
No 313
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=77.79 E-value=1.4 Score=38.56 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.0
Q ss_pred EcCCCCccHHHHHHHHHHHHHHcC
Q 043873 91 LGGKGGVGKTSCAASLAVKFANHG 114 (413)
Q Consensus 91 ~s~kgGvGKtT~a~~lA~~la~~g 114 (413)
+-|..|+||||+...++..+...|
T Consensus 6 i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 6 LTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp EESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EECCCCChHHHHHHHHHhhcccCC
Confidence 349999999999999999888667
No 314
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=77.44 E-value=1.4 Score=47.79 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=32.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..+++.|..|+|||++|..+|..+...+..++.+|+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 626 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 35667799999999999999999988888888898764
No 315
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=77.43 E-value=0.88 Score=41.56 Aligned_cols=31 Identities=29% Similarity=0.311 Sum_probs=22.8
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+++.|.+|+|||++|..+|..+ +.+++.+++
T Consensus 47 vll~G~~GtGKT~la~~la~~~---~~~~~~v~~ 77 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGG 77 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCS
T ss_pred EEEECCCCCcHHHHHHHHHHHh---CCCEEEech
Confidence 4556999999999999998865 444444443
No 316
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=77.43 E-value=1.3 Score=44.26 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.2
Q ss_pred EEEcCCCCccHHHHHHHHHHHH
Q 043873 89 YMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~l 110 (413)
+++.|.+|+|||++|..+|..+
T Consensus 66 iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 66 VLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHHHh
Confidence 4556999999999999999886
No 317
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=77.37 E-value=0.26 Score=40.93 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=16.1
Q ss_pred EEcCCCCccHHHHHHHHHHH
Q 043873 90 MLGGKGGVGKTSCAASLAVK 109 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~ 109 (413)
++.|..|+|||++|..++..
T Consensus 31 ll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 31 FLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEETTCCHHHHHGGGCCT
T ss_pred EEECCCCccHHHHHHHHHHh
Confidence 44599999999998877654
No 318
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=77.27 E-value=1.2 Score=40.07 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHH
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.++++.|..|+||||++..|+..+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 356667999999999999998876
No 319
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=77.22 E-value=1.6 Score=39.28 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+.++.++|..|+||||++..||..| |.+ ++|.|.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l---g~~--~~d~~~ 47 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL---GIH--FYDDDI 47 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH---TCE--EECHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc---CCc--EEcHHH
Confidence 4577778999999999999998877 444 588773
No 320
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=77.15 E-value=1.6 Score=41.00 Aligned_cols=42 Identities=21% Similarity=0.191 Sum_probs=29.6
Q ss_pred cchHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 75 AGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 75 ~~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..+...+... + ++++.|..|+||||++..++..+ | ++.++++
T Consensus 22 ~~L~~~l~~~-~-~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~ 63 (350)
T 2qen_A 22 RKLEESLENY-P-LTLLLGIRRVGKSSLLRAFLNER---P--GILIDCR 63 (350)
T ss_dssp HHHHHHHHHC-S-EEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHH
T ss_pred HHHHHHHhcC-C-eEEEECCCcCCHHHHHHHHHHHc---C--cEEEEee
Confidence 3444444433 3 56667999999999999887653 3 8888875
No 321
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.74 E-value=2 Score=42.82 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=25.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++-+++ .|.+|+|||++|.++|..+ |...+.|++
T Consensus 206 prGiLL-~GPPGtGKT~lakAiA~~~---~~~~~~v~~ 239 (428)
T 4b4t_K 206 PRGVLL-YGPPGTGKTMLVKAVANST---KAAFIRVNG 239 (428)
T ss_dssp CCEEEE-ESCTTTTHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHHh---CCCeEEEec
Confidence 343444 4999999999999998765 666666664
No 322
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=76.51 E-value=1.8 Score=38.84 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=24.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.+.|..|+||||++..||..+ | ..++|+|
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l---g--~~~~d~d 48 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF---G--FTYLDTG 48 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---C--CceecCC
Confidence 45556999999999999888755 4 4577877
No 323
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=76.50 E-value=1.4 Score=40.48 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=23.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|..|+||||++..||..+ | .-++|+|
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l---g--~~~~d~d 80 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL---G--YTFFDCD 80 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH---T--CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--CcEEeCc
Confidence 34445999999999999998876 3 3577776
No 324
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=76.19 E-value=3.4 Score=42.01 Aligned_cols=51 Identities=22% Similarity=0.475 Sum_probs=34.2
Q ss_pred cccchHHhhc-C--CCcEEEEEcCCCCccHHHHHHHHH-HHHHHcCCCeeEEecCC
Q 043873 73 TVAGFDEMVA-G--TQRKHYMLGGKGGVGKTSCAASLA-VKFANHGHPTIVISTDP 124 (413)
Q Consensus 73 ~~~~~~~~~~-~--~~~~i~~~s~kgGvGKtT~a~~lA-~~la~~g~~vllvd~Dp 124 (413)
++..+++..- + .+.++++ .|..|+||||++..++ ..+...+..++.|+...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l-~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLV-SGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEE-EESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CchhHHHhcCCCCCCCeEEEE-EcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 3456666554 2 3444444 4999999999999975 33444477788888754
No 325
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.17 E-value=2.3 Score=42.41 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++-|+++ |.+|+|||++|.++|..+ |...+.+++
T Consensus 215 prGvLLy-GPPGTGKTllAkAiA~e~---~~~f~~v~~ 248 (434)
T 4b4t_M 215 PKGALMY-GPPGTGKTLLARACAAQT---NATFLKLAA 248 (434)
T ss_dssp CCEEEEE-SCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCeeEEE-CcCCCCHHHHHHHHHHHh---CCCEEEEeh
Confidence 4445554 999999999999888754 666777765
No 326
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=76.11 E-value=1.9 Score=37.26 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=18.2
Q ss_pred EEcCCCCccHHHHHHHHHHHH
Q 043873 90 MLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~l 110 (413)
.+.|..|+||||+...++..+
T Consensus 4 ~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 4 IITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 345999999999999998877
No 327
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=76.11 E-value=1.5 Score=39.96 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=18.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++.+.|..|+||||++..||..|
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 44445999999999999998554
No 328
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=76.07 E-value=1.7 Score=41.48 Aligned_cols=24 Identities=46% Similarity=0.643 Sum_probs=20.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la 111 (413)
.+++.|..|+||||++..+|..+.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 556779999999999999998775
No 329
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=75.71 E-value=1.7 Score=43.34 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=23.7
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+++.|.+|+|||++|..+|..+ .+..++.+++
T Consensus 170 vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~ 201 (444)
T 2zan_A 170 ILLFGPPGTGKSYLAKAVATEA--NNSTFFSISS 201 (444)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC--CSSEEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeH
Confidence 3445999999999999998865 3455555654
No 330
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=75.55 E-value=3.1 Score=39.62 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=28.2
Q ss_pred cEEEEEcC-CCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 86 RKHYMLGG-KGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 86 ~~i~~~s~-kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.+|+|-|- -||+|||-++..|+..|. ++++.+|.=
T Consensus 37 PVI~VGNitvGGTGKTP~vi~L~~~L~--~~~~~ilsR 72 (315)
T 4ehx_A 37 PVISVGNLSVGGSGKTSFVMYLADLLK--DKRVCILSR 72 (315)
T ss_dssp CEEEEEESBSSCCSHHHHHHHHHHHTT--TSCEEEEEC
T ss_pred CEEEECCEEeCCCChHHHHHHHHHHHh--hcCceEEee
Confidence 67888766 699999999999999884 566777654
No 331
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=75.30 E-value=2.2 Score=36.96 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=24.3
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHc------CCCeeEE
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANH------GHPTIVI 120 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~------g~~vllv 120 (413)
+++.+..|.|||.++...+..+... +.+++++
T Consensus 51 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil 88 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVL 88 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEE
Confidence 3456999999999999888876543 5577666
No 332
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=75.24 E-value=1.5 Score=39.71 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=18.2
Q ss_pred EEEcCCCCccHHHHHHHHHHHH
Q 043873 89 YMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~l 110 (413)
+++.|.+|+||||++..++..+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4455999999999999988754
No 333
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=74.86 E-value=1.5 Score=38.79 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=25.0
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++.++|..|+||||++..||..| |.+ ++|.|
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l---g~~--~~D~~ 38 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY---NIP--LYSKE 38 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT---TCC--EECHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh---CcC--EECHH
Confidence 467778999999999999998876 555 45644
No 334
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=74.59 E-value=1.8 Score=38.87 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=18.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++++.|+.|+||||+...|+..+
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 56666999999999998887654
No 335
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=74.51 E-value=2.6 Score=44.94 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=26.5
Q ss_pred hHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHc
Q 043873 77 FDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANH 113 (413)
Q Consensus 77 ~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~ 113 (413)
+...+....+.-+++.|.+|+||||++..+|..+...
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 3344444333344666999999999999999988764
No 336
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=74.30 E-value=2.5 Score=42.33 Aligned_cols=30 Identities=37% Similarity=0.451 Sum_probs=23.7
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++.|.+|+||||+|..||..+ |...+.+|+
T Consensus 54 Ll~GppGtGKT~lar~lA~~l---~~~~~~v~~ 83 (444)
T 1g41_A 54 LMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (444)
T ss_dssp EEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred EEEcCCCCCHHHHHHHHHHHc---CCCceeecc
Confidence 334899999999999988765 667777775
No 337
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.21 E-value=2.8 Score=41.86 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++-|+++ |.+|+|||++|.++|..+ |...+.|++
T Consensus 215 prGvLL~-GPPGtGKTllAkAiA~e~---~~~~~~v~~ 248 (437)
T 4b4t_L 215 PKGVLLY-GPPGTGKTLLAKAVAATI---GANFIFSPA 248 (437)
T ss_dssp CCEEEEE-SCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 4555555 999999999999988765 666777765
No 338
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}
Probab=74.00 E-value=2.7 Score=38.41 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=34.6
Q ss_pred hHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 77 FDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 77 ~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
+..++.-.+++++|+++-||.|+ ++|..|+++|.+|.++|-+..
T Consensus 20 ~~~m~~~~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~ 63 (260)
T 3un1_A 20 FQSMMRNQQKVVVITGASQGIGA-----GLVRAYRDRNYRVVATSRSIK 63 (260)
T ss_dssp CHHHHHTTCCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred hhhhhCcCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCChh
Confidence 34455556688999999999996 567788899999999987643
No 339
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=73.83 E-value=2.5 Score=41.14 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=24.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
-+++.|..|+|||++|..+|.. .|..++.+++.
T Consensus 150 ~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~~ 182 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAE---SNATFFNISAA 182 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH---TTCEEEEECSC
T ss_pred eEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeHH
Confidence 4455699999999999988654 46677777653
No 340
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.66 E-value=2.7 Score=41.44 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
++-++++ |.+|+|||++|.++|..+ |...+.|++
T Consensus 182 prGvLL~-GPPGTGKTllAkAiA~e~---~~~f~~v~~ 215 (405)
T 4b4t_J 182 PKGVILY-GPPGTGKTLLARAVAHHT---DCKFIRVSG 215 (405)
T ss_dssp CCCEEEE-SCSSSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCceEEe-CCCCCCHHHHHHHHHHhh---CCCceEEEh
Confidence 3444444 999999999999988754 566666664
No 341
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=73.38 E-value=1.8 Score=37.83 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=18.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++++.|..|+||||+...|...+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 34455999999999999987765
No 342
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=73.22 E-value=2.4 Score=34.63 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=25.5
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLP 354 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~ 354 (413)
+.+++|......-......+.+.++..++|+ -+|.|+.--
T Consensus 81 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 120 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQADYEVAEYLRRKGKPV-ILVATKVDD 120 (161)
T ss_dssp SEEEEEEESSSCCCHHHHHHHHHHHHHTCCE-EEEEECCCS
T ss_pred CEEEEEEECCCcccHhHHHHHHHHHhcCCCE-EEEEECccc
Confidence 4677777766532223355667777777774 588899753
No 343
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=72.98 E-value=2.3 Score=38.19 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=25.2
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.++++.|-.|+||||.+..|+..+.. ++.++-
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ 37 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP---NCKLLK 37 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc---cceEEE
Confidence 46677799999999999999998865 454443
No 344
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=72.77 E-value=3.4 Score=44.02 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=33.0
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC---CCCchhhhhc
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP---AHSLSDSFAQ 134 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp---~~sls~~lg~ 134 (413)
.+++.|..|+|||++|..+|..+ |.+.+-+|+.. .++.+.++|.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~ 536 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCC
Confidence 45666999999999999999988 67778888652 2455555554
No 345
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=72.60 E-value=1.9 Score=39.97 Aligned_cols=31 Identities=32% Similarity=0.389 Sum_probs=22.4
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+.+.|.+|+||||++..+|..+ +...+.++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g 77 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES---GLNFISVKG 77 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT---TCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEc
Confidence 4445999999999999988753 444555554
No 346
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.59 E-value=1.9 Score=41.01 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=19.8
Q ss_pred EEEcCCCCccHHHHHHHHHHHHH
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la 111 (413)
+++.|..|+||||++..+|..+-
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 56679999999999999998764
No 347
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=72.33 E-value=5.4 Score=36.95 Aligned_cols=35 Identities=23% Similarity=0.562 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++++|+++-+|.|+ .+|..|+++|.+|.+++-+.
T Consensus 47 gk~vlVTGas~GIG~-----aia~~la~~G~~V~~~~r~~ 81 (291)
T 3ijr_A 47 GKNVLITGGDSGIGR-----AVSIAFAKEGANIAIAYLDE 81 (291)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCc
Confidence 478999999999986 46778889999999998764
No 348
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=72.30 E-value=2.3 Score=47.37 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=31.8
Q ss_pred cchHHhhc--CCCcEEEEEcCCCCccHHHHHHHHHHHHHH----cCCCeeEEecCC
Q 043873 75 AGFDEMVA--GTQRKHYMLGGKGGVGKTSCAASLAVKFAN----HGHPTIVISTDP 124 (413)
Q Consensus 75 ~~~~~~~~--~~~~~i~~~s~kgGvGKtT~a~~lA~~la~----~g~~vllvd~Dp 124 (413)
..+.+++. .....++.+.|-||+||||+|..++..... ....|..++...
T Consensus 134 ~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 134 HAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp HHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred HHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 34445552 223345556699999999999988876432 223577777654
No 349
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=72.19 E-value=3.3 Score=42.40 Aligned_cols=33 Identities=42% Similarity=0.497 Sum_probs=24.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++.|.+|+||||++..+|..+ +....-|+++
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~~ 142 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISLG 142 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHH---TCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEec
Confidence 45566999999999999999887 3444445443
No 350
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=72.19 E-value=2.3 Score=38.08 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=24.4
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++.+-|..|+||||++..|+.. +.+|.+..-+
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 35556699999999998887764 5677776544
No 351
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=72.06 E-value=4.4 Score=40.79 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=29.7
Q ss_pred cccccchHHhhcC-CCcEEEEEcCCCCccHHHHHHHHHHHHHHc
Q 043873 71 RETVAGFDEMVAG-TQRKHYMLGGKGGVGKTSCAASLAVKFANH 113 (413)
Q Consensus 71 ~~~~~~~~~~~~~-~~~~i~~~s~kgGvGKtT~a~~lA~~la~~ 113 (413)
..+++.++.+..- .++++.++ |..|+||||++..++...+.+
T Consensus 136 ~TGir~ID~L~pi~kGq~~~i~-G~sGvGKTtL~~~l~~~~~~~ 178 (473)
T 1sky_E 136 ETGIKVVDLLAPYIKGGKIGLF-GGAGVGKTVLIQELIHNIAQE 178 (473)
T ss_dssp CCSCHHHHHHSCEETTCEEEEE-CCSSSCHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHhhhccCCEEEEE-CCCCCCccHHHHHHHhhhhhc
Confidence 3466777766542 23444444 999999999999999988753
No 352
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=71.77 E-value=4.9 Score=37.87 Aligned_cols=35 Identities=6% Similarity=0.097 Sum_probs=25.5
Q ss_pred chHHhhcCCCcEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 76 GFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 76 ~~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.+...+..+..-..++.|..|+||||++..+|...
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhC
Confidence 44445554434467778999999999999998753
No 353
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=71.57 E-value=2.7 Score=38.36 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+++++|+++-+|.|+ .+|..|++.|.+|.++|-+.
T Consensus 26 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 61 (260)
T 3gem_A 26 SSAPILITGASQRVGL-----HCALRLLEHGHRVIISYRTE 61 (260)
T ss_dssp -CCCEEESSTTSHHHH-----HHHHHHHHTTCCEEEEESSC
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 4578999999999887 57778889999999998764
No 354
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=71.54 E-value=2.1 Score=39.49 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=18.3
Q ss_pred EEEcCCCCccHHHHHHHHHHHH
Q 043873 89 YMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~l 110 (413)
+++.|..|+||||++..++..+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 4455999999999999998765
No 355
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=71.51 E-value=3.5 Score=39.02 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.+.+++++ |..|+||||+...|+..+
T Consensus 125 ~Ge~vaIv-GpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFI-GPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEE-CSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHhhhc
Confidence 34445544 999999999999999888
No 356
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=70.73 E-value=3.5 Score=37.93 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=24.7
Q ss_pred EEcCCCCccHHHHHHHHHHHHHHcCC-CeeEE
Q 043873 90 MLGGKGGVGKTSCAASLAVKFANHGH-PTIVI 120 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA~~la~~g~-~vllv 120 (413)
++.+.-|+|||.++..++..+...|. +|+++
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil 163 (282)
T 1rif_A 132 ILNLPTSAGRSLIQALLARYYLENYEGKILII 163 (282)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEE
Confidence 34799999999999888887766655 77766
No 357
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=70.53 E-value=2 Score=36.50 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=14.8
Q ss_pred EEEEcCCCCccHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAAS 105 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~ 105 (413)
++.+-|..|+||||++..
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 445559999999999986
No 358
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=70.43 E-value=2.9 Score=43.39 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=26.6
Q ss_pred EcCCCCccHHHHHHHHHHHHHHcC----CCeeEEecC
Q 043873 91 LGGKGGVGKTSCAASLAVKFANHG----HPTIVISTD 123 (413)
Q Consensus 91 ~s~kgGvGKtT~a~~lA~~la~~g----~~vllvd~D 123 (413)
+.|.+|+||||+.++-+..+.+.+ .++|++..-
T Consensus 27 V~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft 63 (647)
T 3lfu_A 27 VLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFT 63 (647)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESS
T ss_pred EEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEecc
Confidence 337799999999999888888763 589988764
No 359
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=70.32 E-value=2.1 Score=40.79 Aligned_cols=25 Identities=40% Similarity=0.787 Sum_probs=19.2
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHP 116 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~ 116 (413)
-+++.|+.|+||||+|..| .++|++
T Consensus 149 gvli~G~sG~GKStlal~l----~~~G~~ 173 (312)
T 1knx_A 149 GVLLTGRSGIGKSECALDL----INKNHL 173 (312)
T ss_dssp EEEEEESSSSSHHHHHHHH----HTTTCE
T ss_pred EEEEEcCCCCCHHHHHHHH----HHcCCE
Confidence 4566699999999998664 457875
No 360
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=70.31 E-value=2.7 Score=37.55 Aligned_cols=31 Identities=32% Similarity=0.397 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..|.+ .|.-|+||||++..|+. .| .-++|+|
T Consensus 10 ~~igl-TGgigsGKStv~~~l~~----~g--~~vidaD 40 (210)
T 4i1u_A 10 YAIGL-TGGIGSGKTTVADLFAA----RG--ASLVDTD 40 (210)
T ss_dssp CEEEE-ECCTTSCHHHHHHHHHH----TT--CEEEEHH
T ss_pred eEEEE-ECCCCCCHHHHHHHHHH----CC--CcEEECc
Confidence 33444 48889999999987654 56 4568988
No 361
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=69.94 E-value=2.9 Score=39.75 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=21.4
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFAN 112 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~ 112 (413)
.+++.|..|+||||+|..+|..+-.
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCchHHHHHHHHHHHHhC
Confidence 4566799999999999999998863
No 362
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=69.86 E-value=2.4 Score=36.05 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la 111 (413)
+.++.|..|+||||+.-.+...+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 556669999999999998888764
No 363
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=69.66 E-value=2.7 Score=36.79 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=18.6
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++.+.|..|+||||+...++..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 44445999999999999888765
No 364
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.57 E-value=4.4 Score=40.34 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.+-|+++ |.+|+|||++|.++|..+ |...+.+++
T Consensus 216 prGvLLy-GPPGTGKTlLAkAiA~e~---~~~fi~v~~ 249 (437)
T 4b4t_I 216 PKGVILY-GAPGTGKTLLAKAVANQT---SATFLRIVG 249 (437)
T ss_dssp CSEEEEE-SSTTTTHHHHHHHHHHHH---TCEEEEEES
T ss_pred CCCCceE-CCCCchHHHHHHHHHHHh---CCCEEEEEH
Confidence 3445554 999999999999888764 556666654
No 365
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=69.29 E-value=1.1 Score=41.00 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=20.4
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHH
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.++++.|-.|+||||++..|+..+
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 466777999999999999888766
No 366
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=69.29 E-value=5.6 Score=39.26 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.++|.|++. -||||++.-++..|...|++|.++-.
T Consensus 39 ~~vI~VtGT---nGKtTT~~~l~~iL~~~G~~vg~~~s 73 (428)
T 1jbw_A 39 GRYIHVTGT---NGKGSAANAIAHVLEASGLTVGLYTS 73 (428)
T ss_dssp SCEEEEECS---SCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CcEEEEECC---CChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 467777754 58999999999999999999998755
No 367
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=69.10 E-value=1.7 Score=41.15 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=19.0
Q ss_pred EEEcCCCCccHHHHHHHHHHHHH
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la 111 (413)
+++.|..|+|||++|..+|..+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 44559999999999999988664
No 368
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=68.97 E-value=6.6 Score=37.89 Aligned_cols=38 Identities=21% Similarity=0.175 Sum_probs=32.8
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.+++.+++.--++||||++..|...+.++|+++..+=+
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~t 206 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLAT 206 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEcc
Confidence 46788887777899999999999999999999987543
No 369
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=68.78 E-value=3.7 Score=36.41 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
|++++|+++-||.|+. +|..|+++|.+|.+++-+
T Consensus 1 Mk~vlVTGas~gIG~~-----~a~~l~~~G~~V~~~~r~ 34 (230)
T 3guy_A 1 MSLIVITGASSGLGAE-----LAKLYDAEGKATYLTGRS 34 (230)
T ss_dssp --CEEEESTTSHHHHH-----HHHHHHHTTCCEEEEESC
T ss_pred CCEEEEecCCchHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 4678999999999974 667888999999999865
No 370
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=68.57 E-value=4.3 Score=36.62 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
+++++|+++-||.|+ ++|..|+++|.+|.++|-+..
T Consensus 22 ~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 22 SKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence 478999999999996 577888999999999997653
No 371
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=68.57 E-value=3.2 Score=37.91 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=19.8
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCe
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPT 117 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~v 117 (413)
++.++|+.|+||||+|..|+.. .|.++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH---SCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHh---cCCeE
Confidence 4556689999999999877543 46554
No 372
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=68.56 E-value=2 Score=38.39 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=12.8
Q ss_pred EEEEcCCCCccHHHHHHHHH-HHH
Q 043873 88 HYMLGGKGGVGKTSCAASLA-VKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA-~~l 110 (413)
++.+.|..|+||||++..|+ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 44556999999999999887 544
No 373
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=68.32 E-value=3.9 Score=37.41 Aligned_cols=33 Identities=30% Similarity=0.575 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
|+++|+++-+|.|+. +|..|++.|.+|+++|.|
T Consensus 3 K~vlVTGas~GIG~a-----ia~~la~~Ga~V~~~~~~ 35 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQ-----ICLDFLEAGDKVCFIDID 35 (247)
T ss_dssp CEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CEEEEecCCCHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 778999999999985 678899999999999987
No 374
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.96 E-value=3.1 Score=41.78 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
..+-|+ +.|.+|+|||++|.++|..+ |...+.+++
T Consensus 242 pprGIL-LyGPPGTGKTlLAkAiA~e~---~~~fi~vs~ 276 (467)
T 4b4t_H 242 PPKGIL-LYGPPGTGKTLCARAVANRT---DATFIRVIG 276 (467)
T ss_dssp CCSEEE-ECSCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCCceE-eeCCCCCcHHHHHHHHHhcc---CCCeEEEEh
Confidence 344444 44999999999999888754 556666664
No 375
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=67.87 E-value=3.2 Score=39.84 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=21.5
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHG 114 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g 114 (413)
..+++-|-=|+||||.+..|+..|...|
T Consensus 5 ~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 5 LRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 4778889999999999999999998776
No 376
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=67.69 E-value=4.1 Score=36.93 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHH
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.+.++ |.+|+||||.|..|+..+
T Consensus 10 ~~~~~-G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILL-GAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHH
T ss_pred ceeeE-CCCCCCHHHHHHHHHHHh
Confidence 35554 899999999999998776
No 377
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=67.68 E-value=3.3 Score=37.90 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++++|+++-+|.|+. +|..|+++|.+|.++|-+
T Consensus 26 ~gk~vlVTGas~gIG~a-----ia~~la~~G~~V~~~~r~ 60 (266)
T 3grp_A 26 TGRKALVTGATGGIGEA-----IARCFHAQGAIVGLHGTR 60 (266)
T ss_dssp TTCEEEESSTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 45889999999999964 677889999999998865
No 378
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=67.57 E-value=3.7 Score=36.97 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=21.6
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.++.+..|.|||.++..++..+ +.+++++-
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~ 140 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL---STPTLIVV 140 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS---CSCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 3444789999999988776653 66776663
No 379
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=67.53 E-value=4.2 Score=36.40 Aligned_cols=34 Identities=18% Similarity=0.446 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++++|+++-+|.|+ .+|..|+++|.+|.++|-+
T Consensus 3 ~k~vlVTGas~GIG~-----a~a~~l~~~G~~V~~~~r~ 36 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGR-----ALTIGLVERGHQVSMMGRR 36 (235)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECC
Confidence 478999999999997 5778888999999999875
No 380
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=67.45 E-value=3.9 Score=39.96 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHG 114 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g 114 (413)
..++++-|-=|+||||.+..|+..|...|
T Consensus 49 ~~fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 49 LLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 35778889999999999999999998776
No 381
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=67.28 E-value=4.2 Score=37.60 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=29.7
Q ss_pred hhcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 80 MVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 80 ~~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++.-.+++++|+++-+|.|+. +|..|++.|.+|.++|-+
T Consensus 23 m~~~~~k~~lVTGas~GIG~a-----ia~~la~~G~~V~~~~r~ 61 (283)
T 3v8b_A 23 MMNQPSPVALITGAGSGIGRA-----TALALAADGVTVGALGRT 61 (283)
T ss_dssp ----CCCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESS
T ss_pred hcCCCCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 334456889999999999965 677888999999999865
No 382
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=67.14 E-value=4.6 Score=36.25 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++++|+++-||.|+. +|..|+++|.+|.+++-+.
T Consensus 1 mk~vlVTGas~gIG~~-----~a~~l~~~G~~V~~~~r~~ 35 (257)
T 1fjh_A 1 MSIIVISGCATGIGAA-----TRKVLEAAGHQIVGIDIRD 35 (257)
T ss_dssp CCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCCc
Confidence 4678999999999975 6677888999999998764
No 383
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=67.05 E-value=3.1 Score=42.16 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=23.8
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+++.|.+|+|||++|..+|..+ +.+++.+++
T Consensus 241 vLL~GppGtGKT~lAraia~~~---~~~fv~vn~ 271 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANET---GAFFFLING 271 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC---SSEEEEEEH
T ss_pred EEEECcCCCCHHHHHHHHHHHh---CCCEEEEEc
Confidence 4455999999999999887654 667777765
No 384
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=66.94 E-value=5 Score=36.67 Aligned_cols=34 Identities=24% Similarity=0.673 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++++|+++-||.|+ .+|..|++.|.+|.+++-+
T Consensus 16 ~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~ 49 (266)
T 3p19_A 16 KKLVVITGASSGIGE-----AIARRFSEEGHPLLLLARR 49 (266)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECC
Confidence 478999999999997 4778889999999999865
No 385
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=66.83 E-value=2.9 Score=35.55 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=13.2
Q ss_pred CCCCccHHHHHHHHH
Q 043873 93 GKGGVGKTSCAASLA 107 (413)
Q Consensus 93 ~kgGvGKtT~a~~lA 107 (413)
|.+||||||+...++
T Consensus 9 G~~gvGKStLl~~l~ 23 (184)
T 2zej_A 9 GNTGSGKTTLLQQLM 23 (184)
T ss_dssp SCTTSSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHh
Confidence 999999999987665
No 386
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=66.52 E-value=2.8 Score=37.24 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=18.2
Q ss_pred EEEcCCCCccHHHHHHHHHHHH
Q 043873 89 YMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~l 110 (413)
+.+.|..|+||||+.-.|+..+
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 3444999999999999988866
No 387
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=66.03 E-value=4 Score=39.83 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
..++.+.|..|+||||++..++..+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3355566999999999999999754
No 388
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}
Probab=65.86 E-value=3.7 Score=37.59 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++|+++-+|.|+ .+|..|+++|.+|.++|-+.
T Consensus 27 ~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~~ 62 (266)
T 3uxy_A 27 EGKVALVTGAAGGIGG-----AVVTALRAAGARVAVADRAV 62 (266)
T ss_dssp TTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEECSSCC
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4588999999999997 47778899999999988653
No 389
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=65.31 E-value=4.5 Score=37.64 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCC--CccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 84 TQRKHYMLGGKG--GVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 84 ~~~~i~~~s~kg--GvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++++|+++-| |.|+ .+|..|++.|.+|.++|-+
T Consensus 29 ~~k~vlVTGasg~~GIG~-----~ia~~la~~G~~V~~~~r~ 65 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAW-----GIAKAVCAQGAEVALTYLS 65 (296)
T ss_dssp TTCEEEEECCCSTTSHHH-----HHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEEeCCCCCCHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 457888888876 8776 5778889999999999865
No 390
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=65.24 E-value=5.6 Score=36.36 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++++|+++-+|.|+ .+|..|+++|.+|.++|-+.
T Consensus 11 ~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 45 (271)
T 3tzq_B 11 NKVAIITGACGGIGL-----ETSRVLARAGARVVLADLPE 45 (271)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECTT
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEcCCH
Confidence 478999999999997 46778889999999998764
No 391
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=65.19 E-value=4.3 Score=37.14 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
..++++|+++-+|.|+ .+|..|+++|.+|+++|-+..
T Consensus 13 ~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~~ 49 (269)
T 3vtz_A 13 TDKVAIVTGGSSGIGL-----AVVDALVRYGAKVVSVSLDEK 49 (269)
T ss_dssp TTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCC-
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCch
Confidence 3588999999999997 477788999999999987753
No 392
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=65.11 E-value=4.5 Score=37.05 Aligned_cols=35 Identities=17% Similarity=0.390 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++++|+++-+|.|+. +|..|+++|.+|+++|-+
T Consensus 29 ~~k~vlVTGas~GIG~a-----ia~~l~~~G~~Vi~~~r~ 63 (281)
T 3ppi_A 29 EGASAIVSGGAGGLGEA-----TVRRLHADGLGVVIADLA 63 (281)
T ss_dssp TTEEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEECCCChHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 45889999999999874 677888999999999875
No 393
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}
Probab=65.06 E-value=4.9 Score=36.38 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=29.7
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++|+++-||.|+. +|..|++.|.+|.++|-++
T Consensus 11 ~~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 46 (263)
T 3ak4_A 11 SGRKAIVTGGSKGIGAA-----IARALDKAGATVAIADLDV 46 (263)
T ss_dssp TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCChHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 34789999999999974 6777888999999998663
No 394
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=65.03 E-value=4.3 Score=34.46 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=25.5
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
..+++|.......-.+...+.+.+...++|+ -+|+|+.--.
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl~ 147 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDDVQMYEFLKYYGIPV-IVIATKADKI 147 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEECGGGS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECcccC
Confidence 4667776654432233345677777777774 4889997543
No 395
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=64.99 E-value=4.5 Score=37.27 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=29.7
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..++++|+++-+|.|+ .+|..|+++|.+|+++|-+
T Consensus 28 ~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~ 62 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGL-----AVARRLADEGCHVLCADID 62 (277)
T ss_dssp TTCEEEETTTTSTHHH-----HHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 3478999999999997 4777888999999999865
No 396
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=64.85 E-value=7.1 Score=38.75 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.++|.|++. -||||++.-++..|...|++|.++..
T Consensus 52 ~~vI~VTGT---nGKtTT~~~l~~iL~~~G~~vg~~~S 86 (442)
T 1o5z_A 52 YKTIHIGGT---NGKGSVANMVSNILVSQGYRVGSYYS 86 (442)
T ss_dssp SEEEEEECS---SSHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred CCEEEEECC---cCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 367777644 58999999999999999999998754
No 397
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=64.79 E-value=4.9 Score=36.17 Aligned_cols=34 Identities=26% Similarity=0.527 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++|+++-+|.|+ .+|..|+++|.+|.++|-+
T Consensus 6 gk~vlVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~ 39 (247)
T 3rwb_A 6 GKTALVTGAAQGIGK-----AIAARLAADGATVIVSDIN 39 (247)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEECSC
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 478999999999997 5778889999999998765
No 398
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=64.78 E-value=5.2 Score=36.19 Aligned_cols=34 Identities=18% Similarity=0.466 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++++|+++-||.|+. +|..|+++|.+|.++|-+
T Consensus 8 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~ 41 (259)
T 4e6p_A 8 GKSALITGSARGIGRA-----FAEAYVREGATVAIADID 41 (259)
T ss_dssp TCEEEEETCSSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 4789999999999974 778889999999999865
No 399
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=64.55 E-value=5.2 Score=36.55 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++++|+++-+|.|+. +|..|+++|.+|+++|-+.
T Consensus 13 gk~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 47 (278)
T 3sx2_A 13 GKVAFITGAARGQGRA-----HAVRLAADGADIIAVDLCD 47 (278)
T ss_dssp TCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEECCS
T ss_pred CCEEEEECCCChHHHH-----HHHHHHHCCCeEEEEeccc
Confidence 4789999999999974 6778889999999998763
No 400
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=64.37 E-value=5.4 Score=35.99 Aligned_cols=34 Identities=24% Similarity=0.522 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++|+++-+|.|+. +|..|+++|.+|+++|-+
T Consensus 12 ~k~vlVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~ 45 (252)
T 3f1l_A 12 DRIILVTGASDGIGRE-----AAMTYARYGATVILLGRN 45 (252)
T ss_dssp TCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCEEEEeCCCChHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 4789999999999974 677888999999999865
No 401
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=64.22 E-value=6.3 Score=39.72 Aligned_cols=31 Identities=35% Similarity=0.357 Sum_probs=23.3
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+++.|.+|+||||++..+|..+ |....-+++
T Consensus 52 vLL~GppGtGKT~Laraia~~~---~~~f~~is~ 82 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA---NVPFFHISG 82 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCCeeeCCH
Confidence 4455999999999999998754 566665654
No 402
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=64.21 E-value=4.5 Score=36.11 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++++|+++-||.|+. +|..|+++|.+|.+++-+
T Consensus 14 ~k~vlITGas~gIG~~-----ia~~l~~~G~~V~~~~r~ 47 (247)
T 3i1j_A 14 GRVILVTGAARGIGAA-----AARAYAAHGASVVLLGRT 47 (247)
T ss_dssp TCEEEESSTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCEEEEeCCCChHHHH-----HHHHHHHCCCEEEEEecC
Confidence 4789999999999974 677888999999999865
No 403
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=64.16 E-value=5.4 Score=36.99 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=23.9
Q ss_pred hHHhhcCC-C-cEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 77 FDEMVAGT-Q-RKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 77 ~~~~~~~~-~-~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
+..++.+. + +.-+++.|.+|+|||+++..+|..+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 45555553 3 3345555999999999999888754
No 404
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=64.15 E-value=5.6 Score=35.51 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
+++++|+++-||.|+. +|..|+++|.+|.+++-++.
T Consensus 7 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~~ 42 (241)
T 1dhr_A 7 ARRVLVYGGRGALGSR-----CVQAFRARNWWVASIDVVEN 42 (241)
T ss_dssp CCEEEEETTTSHHHHH-----HHHHHHTTTCEEEEEESSCC
T ss_pred CCEEEEECCCcHHHHH-----HHHHHHhCCCEEEEEeCChh
Confidence 4789999999999975 67788899999999987653
No 405
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=64.03 E-value=5.4 Score=36.50 Aligned_cols=35 Identities=31% Similarity=0.461 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++++|+++-+|.|+ .+|..|+++|.+|+++|-+.
T Consensus 10 gk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~~~~ 44 (287)
T 3pxx_A 10 DKVVLVTGGARGQGR-----SHAVKLAEEGADIILFDICH 44 (287)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECCS
T ss_pred CCEEEEeCCCChHHH-----HHHHHHHHCCCeEEEEcccc
Confidence 478999999999996 47788899999999998763
No 406
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=64.03 E-value=5.2 Score=36.12 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
..++++|+++-+|.|+ .+|..|++.|.+|.+++-+
T Consensus 6 ~~k~~lVTGas~GIG~-----aia~~l~~~G~~V~~~~r~ 40 (250)
T 3nyw_A 6 QKGLAIITGASQGIGA-----VIAAGLATDGYRVVLIARS 40 (250)
T ss_dssp CCCEEEEESTTSHHHH-----HHHHHHHHHTCEEEEEESC
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECC
Confidence 3578999999999997 5777888899999999865
No 407
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=63.98 E-value=5.5 Score=36.02 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+++++|+++-+|.|+ .+|..|+++|.+|.++|-+.
T Consensus 6 ~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~ 41 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGA-----EIAKKFAAEGFTVFAGRRNG 41 (252)
T ss_dssp CSCEEEEECCSSHHHH-----HHHHHHHHTTCEEEEEESSG
T ss_pred CCCEEEEECCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3478999999999996 47778889999999998753
No 408
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=63.98 E-value=5.6 Score=35.52 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++++|+++-||.|+ ++|..|+++|.+|.+++-+
T Consensus 10 ~~k~vlITGasggiG~-----~la~~l~~~G~~V~~~~r~ 44 (254)
T 2wsb_A 10 DGACAAVTGAGSGIGL-----EICRAFAASGARLILIDRE 44 (254)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 3478999999999997 5677888899999999865
No 409
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=63.79 E-value=5.6 Score=35.66 Aligned_cols=34 Identities=24% Similarity=0.495 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++|+++-+|.|+ .+|..|+++|.+|.++|-+
T Consensus 9 ~k~vlITGas~giG~-----~~a~~l~~~G~~V~~~~r~ 42 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQ-----AYAEALAREGAAVVVADIN 42 (253)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEcCC
Confidence 478999999999986 5788889999999998865
No 410
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=63.77 E-value=5.6 Score=32.98 Aligned_cols=41 Identities=10% Similarity=0.215 Sum_probs=27.0
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
+.+++|.........+....+..+...++|+ -+|.|+.--.
T Consensus 80 d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~-ilv~nK~Dl~ 120 (178)
T 2lkc_A 80 DIVILVVAADDGVMPQTVEAINHAKAANVPI-IVAINKMDKP 120 (178)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHGGGSCCE-EEEEETTTSS
T ss_pred CEEEEEEECCCCCcHHHHHHHHHHHhCCCCE-EEEEECccCC
Confidence 4677777655544556666677777777774 5788997543
No 411
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=63.56 E-value=5.7 Score=35.97 Aligned_cols=34 Identities=18% Similarity=0.455 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++|+++-+|.|+ .+|..|+++|.+|.++|-+
T Consensus 8 gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~ 41 (255)
T 4eso_A 8 GKKAIVIGGTHGMGL-----ATVRRLVEGGAEVLLTGRN 41 (255)
T ss_dssp TCEEEEETCSSHHHH-----HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 478999999999997 4778889999999999865
No 412
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=63.53 E-value=5.7 Score=35.40 Aligned_cols=35 Identities=29% Similarity=0.585 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
++++|+++-||.|+. +|..|+++|.+|.+++-++.
T Consensus 3 k~vlVTGas~giG~~-----~a~~l~~~G~~V~~~~r~~~ 37 (239)
T 2ekp_A 3 RKALVTGGSRGIGRA-----IAEALVARGYRVAIASRNPE 37 (239)
T ss_dssp CEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSCH
T ss_pred CEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCCHH
Confidence 678999999999974 67788899999999987653
No 413
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=63.49 E-value=4.3 Score=38.13 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=20.8
Q ss_pred hHHhhcCCCcEEEEEcCCCCccHHHHHHHHH
Q 043873 77 FDEMVAGTQRKHYMLGGKGGVGKTSCAASLA 107 (413)
Q Consensus 77 ~~~~~~~~~~~i~~~s~kgGvGKtT~a~~lA 107 (413)
++++.......+..+.|..|+||||+.-.|+
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 3444433223355556999999999998887
No 414
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=63.44 E-value=4.9 Score=34.38 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=24.5
Q ss_pred ceEEEEecCc-cchHHHHHHHHHHHHhc----CCCcceEEEecccCC
Q 043873 314 TEFVIVTIPT-VMAISESSRLHASLRKE----CIPVQRLIVNQVLPP 355 (413)
Q Consensus 314 t~~vlVt~pe-~~~~~ea~r~~~~l~~~----gi~v~gvVvN~v~~~ 355 (413)
+.+++|.... ..++.+....+..+... ++|+ -+|.|+.--.
T Consensus 98 d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~pi-ilv~NK~Dl~ 143 (192)
T 2b6h_A 98 QGLIFVVDSNDRERVQESADELQKMLQEDELRDAVL-LVFANKQDMP 143 (192)
T ss_dssp CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEE-EEEEECTTST
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeE-EEEEECCCCC
Confidence 4566666554 44567766666655442 4443 5788998643
No 415
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=63.43 E-value=3.6 Score=33.42 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=23.7
Q ss_pred eEEEEecCc-cchHHHHHHHHHHHHhc----CCCcceEEEecccC
Q 043873 315 EFVIVTIPT-VMAISESSRLHASLRKE----CIPVQRLIVNQVLP 354 (413)
Q Consensus 315 ~~vlVt~pe-~~~~~ea~r~~~~l~~~----gi~v~gvVvN~v~~ 354 (413)
.+++|.... ..+..+....++.+... ++|+ -+|+|++--
T Consensus 77 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~-iiv~nK~Dl 120 (166)
T 2ce2_X 77 GFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM-VLVGNKSDL 120 (166)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCE-EEEEECTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEEchhh
Confidence 455555544 44556666666666554 4554 488899764
No 416
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=63.32 E-value=4.5 Score=34.16 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.5
Q ss_pred EEEEcCCCCccHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
++.+.|..|+||||+...++..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 44455999999999999999888
No 417
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=63.31 E-value=4.4 Score=36.64 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=18.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.+++++ |+.|+||||+...++..+
T Consensus 32 e~~~i~-G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVV-GQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHTTCS
T ss_pred CEEEEE-CCCCCCHHHHHHHHhcCC
Confidence 444444 999999999998887654
No 418
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=63.26 E-value=5.5 Score=35.39 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
+++++|+++-||.|+ .+|..|+++|.+|.+++-++.
T Consensus 3 ~k~vlITGas~gIG~-----~~a~~l~~~G~~V~~~~r~~~ 38 (236)
T 1ooe_A 3 SGKVIVYGGKGALGS-----AILEFFKKNGYTVLNIDLSAN 38 (236)
T ss_dssp CEEEEEETTTSHHHH-----HHHHHHHHTTEEEEEEESSCC
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEecCcc
Confidence 367899999999986 467788899999999987754
No 419
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=63.24 E-value=6.6 Score=35.42 Aligned_cols=36 Identities=19% Similarity=0.423 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++|+++-+|.|+. +|..|+++|.+|+++|-+.
T Consensus 6 ~~k~~lVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~~ 41 (257)
T 3tpc_A 6 KSRVFIVTGASSGLGAA-----VTRMLAQEGATVLGLDLKP 41 (257)
T ss_dssp TTCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCCh
Confidence 34789999999999974 6778889999999998764
No 420
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=63.22 E-value=5.1 Score=36.81 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
.+++++|+++-+|.|+ .+|..|+++|.+|+++|
T Consensus 30 ~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~ 62 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGR-----AIAHGYARAGAHVLAWG 62 (273)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEc
Confidence 4588999999999997 47788899999999998
No 421
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=63.18 E-value=4.2 Score=36.66 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++++|+++-+|.|+ .+|..|+++|.+|.++|-+
T Consensus 8 ~gk~~lVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~ 42 (248)
T 3op4_A 8 EGKVALVTGASRGIGK-----AIAELLAERGAKVIGTATS 42 (248)
T ss_dssp TTCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 4578999999999886 4777889999999998865
No 422
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=63.14 E-value=6.5 Score=35.83 Aligned_cols=35 Identities=26% Similarity=0.597 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+|+++|+++-+|-|+. +|..|++.|.+|.+.|-|.
T Consensus 11 GK~alVTGas~GIG~a-----ia~~la~~Ga~Vv~~~~~~ 45 (242)
T 4b79_A 11 GQQVLVTGGSSGIGAA-----IAMQFAELGAEVVALGLDA 45 (242)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESST
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 5899999999999975 6888999999999999875
No 423
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=63.06 E-value=6.3 Score=36.19 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=32.1
Q ss_pred hcCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 81 VAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 81 ~~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
++-.+++++|+++-+|.|+. +|..|+++|.+|.++|-+..
T Consensus 29 ~~l~gk~~lVTGas~GIG~a-----ia~~la~~G~~V~~~~r~~~ 68 (275)
T 4imr_A 29 FGLRGRTALVTGSSRGIGAA-----IAEGLAGAGAHVILHGVKPG 68 (275)
T ss_dssp HCCTTCEEEETTCSSHHHHH-----HHHHHHHTTCEEEEEESSTT
T ss_pred CCCCCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEcCCHH
Confidence 34456889999999999974 67788899999999987643
No 424
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=62.87 E-value=5.7 Score=36.52 Aligned_cols=35 Identities=31% Similarity=0.536 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++++|+++-+|.|+. +|..|+++|.+|.++|-+
T Consensus 26 ~~k~vlVTGas~GIG~a-----ia~~l~~~G~~V~~~~r~ 60 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRA-----TAELFAKNGAYVVVADVN 60 (277)
T ss_dssp TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 35789999999999974 778888999999999865
No 425
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=62.81 E-value=7.2 Score=34.13 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCCccHHHH-HHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSC-AASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~-a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+.+.++|+-||++|++. -+.|+....+.|++|.++--|.
T Consensus 50 ~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~ 90 (189)
T 2l8b_A 50 RPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADR 90 (189)
T ss_dssp SCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTT
T ss_pred CCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCch
Confidence 355889999999999987 4556666667999999998773
No 426
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=62.76 E-value=5.3 Score=33.12 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=14.6
Q ss_pred EEcCCCCccHHHHHHHHH
Q 043873 90 MLGGKGGVGKTSCAASLA 107 (413)
Q Consensus 90 ~~s~kgGvGKtT~a~~lA 107 (413)
++-|.+|+||||+...+.
T Consensus 7 ~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 7 ALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 334999999999988774
No 427
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=62.76 E-value=6.1 Score=34.96 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++++|+++-||.|+. +|..|+++|.+|.+++-+
T Consensus 2 ~k~vlITGas~gIG~~-----ia~~l~~~G~~V~~~~r~ 35 (235)
T 3l77_A 2 MKVAVITGASRGIGEA-----IARALARDGYALALGARS 35 (235)
T ss_dssp CCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 4789999999998864 677888999999998865
No 428
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=62.73 E-value=11 Score=34.41 Aligned_cols=34 Identities=29% Similarity=0.600 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++++|+++-+|.|+. +|..|+++|.+|.++|-+
T Consensus 27 ~k~~lVTGas~GIG~a-----ia~~l~~~G~~V~~~~r~ 60 (277)
T 4fc7_A 27 DKVAFITGGGSGIGFR-----IAEIFMRHGCHTVIASRS 60 (277)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHTTTCEEEEEESC
T ss_pred CCEEEEeCCCchHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 4789999999999875 677888999999999865
No 429
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=62.70 E-value=5.1 Score=33.70 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=24.6
Q ss_pred ceEEEEecCc-cchHHHHHHHHHHHHhc----CCCcceEEEecccCC
Q 043873 314 TEFVIVTIPT-VMAISESSRLHASLRKE----CIPVQRLIVNQVLPP 355 (413)
Q Consensus 314 t~~vlVt~pe-~~~~~ea~r~~~~l~~~----gi~v~gvVvN~v~~~ 355 (413)
+.+++|.... ..+..+..+.+..+... ++| .-+|.|+.--.
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 132 (186)
T 1ksh_A 87 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLP 132 (186)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTST
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCC
Confidence 4666666654 44567776666655443 444 35788997643
No 430
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=62.68 E-value=5.8 Score=36.86 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
+++++|+++-+|.|+ .+|..|++.|.+|+++|.+..
T Consensus 28 gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~~~~~ 63 (299)
T 3t7c_A 28 GKVAFITGAARGQGR-----SHAITLAREGADIIAIDVCKQ 63 (299)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEECCSC
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEecccc
Confidence 478999999999997 477888999999999997743
No 431
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=62.59 E-value=4.6 Score=36.44 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=17.9
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.+++++ |..|+||||+...++..+
T Consensus 32 e~~~ii-G~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIM-GPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHTTSS
T ss_pred CEEEEE-CCCCCcHHHHHHHHhcCC
Confidence 444444 999999999988776544
No 432
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=62.46 E-value=4.8 Score=39.93 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.++|.|++ =-||||++.-++..|...|+||.++..
T Consensus 52 ~~vI~VtG---TNGKgSt~~~l~~iL~~~G~~vg~~tS 86 (437)
T 3nrs_A 52 PKIFTVAG---TNGKGTTCCTLEAILLAAGLRVGVYSS 86 (437)
T ss_dssp SEEEEEEC---SSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCEEEEEC---CcChHHHHHHHHHHHHHCCCcEEEECC
Confidence 45677764 458999999999999999999998765
No 433
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=62.42 E-value=7 Score=35.57 Aligned_cols=36 Identities=22% Similarity=0.462 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
.++++|+++-||.|+. +|..|+++|.+|.+++-++.
T Consensus 8 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~~ 43 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRA-----IAERFVDEGSKVIDLSIHDP 43 (264)
T ss_dssp TCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESSCC
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEecCcc
Confidence 4789999999999975 67788899999999987754
No 434
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=62.38 E-value=6 Score=36.26 Aligned_cols=36 Identities=25% Similarity=0.605 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++|+++-+|.|+ ++|..|+++|.+|.++|-++
T Consensus 10 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 45 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGK-----GVAAGLVAAGASVMIVGRNP 45 (281)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3478999999999997 47788889999999998653
No 435
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=62.36 E-value=4.3 Score=34.30 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=15.6
Q ss_pred EEEEcCCCCccHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAV 108 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~ 108 (413)
|+++ |.+|+||||+...|..
T Consensus 24 i~vv-G~~~~GKSsli~~l~~ 43 (190)
T 3con_A 24 LVVV-GAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEE-CSTTSSHHHHHHHHHH
T ss_pred EEEE-CcCCCCHHHHHHHHHc
Confidence 4444 7899999999888763
No 436
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=62.30 E-value=6.8 Score=35.17 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
.++++|+++-||.|+. +|..|+++|.+|.+++-++.
T Consensus 7 ~k~vlVTGas~giG~~-----ia~~l~~~G~~V~~~~r~~~ 42 (250)
T 2fwm_X 7 GKNVWVTGAGKGIGYA-----TALAFVEAGAKVTGFDQAFT 42 (250)
T ss_dssp TCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCCC
T ss_pred CCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCchh
Confidence 4789999999999985 67788899999999987653
No 437
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=61.98 E-value=6.3 Score=35.61 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++++|+++-||.|+. +|..|+++|.+|.+++-+
T Consensus 9 ~k~vlVTGas~giG~~-----ia~~l~~~G~~V~~~~r~ 42 (260)
T 2ae2_A 9 GCTALVTGGSRGIGYG-----IVEELASLGASVYTCSRN 42 (260)
T ss_dssp TCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 4789999999999974 677788899999998865
No 438
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=61.93 E-value=6.6 Score=35.28 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++++|+++-||.|+. +|..|+++|.+|.++|-++
T Consensus 7 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 41 (249)
T 2ew8_A 7 DKLAVITGGANGIGRA-----IAERFAVEGADIAIADLVP 41 (249)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEcCCc
Confidence 4789999999999975 6677888999999998765
No 439
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2
Probab=61.81 E-value=6.9 Score=35.28 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
+++++|+++-||.|+. +|..|++.|.+|.++|-++.
T Consensus 6 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~~ 41 (256)
T 2d1y_A 6 GKGVLVTGGARGIGRA-----IAQAFAREGALVALCDLRPE 41 (256)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSTT
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCChh
Confidence 4789999999999975 67788899999999987643
No 440
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=61.75 E-value=4.5 Score=36.54 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
|++++|+++-||.|+. +|..|+++|.+|.++|-++
T Consensus 1 Mk~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 35 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMG-----SALRLSEAGHTVACHDESF 35 (254)
T ss_dssp -CEEEESSTTSTTHHH-----HHHHHHHTTCEEEECCGGG
T ss_pred CeEEEEeCCCchHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 3678999999999975 6778889999999987653
No 441
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=61.69 E-value=6.2 Score=35.46 Aligned_cols=33 Identities=30% Similarity=0.575 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
++++|+++-+|.|+. +|..|+++|.+|.++|-+
T Consensus 3 k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~ 35 (247)
T 3dii_A 3 RGVIVTGGGHGIGKQ-----ICLDFLEAGDKVCFIDID 35 (247)
T ss_dssp CEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 678999999999964 677888999999999865
No 442
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=61.62 E-value=6.1 Score=32.82 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=19.3
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la 111 (413)
+.++.|..|+||||+--++...+-
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 556669999999999888877663
No 443
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=61.57 E-value=5.4 Score=36.27 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++|+++-+|.|+. +|..|+++|.+|.++|-+.
T Consensus 9 ~~k~vlVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~~ 44 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRG-----IATVFARAGANVAVAGRST 44 (262)
T ss_dssp TTCEEEETTCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 45889999999999975 6778889999999998653
No 444
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=61.49 E-value=5.3 Score=35.65 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++|+++-||.|+ .+|..|+++|.+|++++-+
T Consensus 5 ~k~vlITGas~gIG~-----~~a~~l~~~G~~v~~~~r~ 38 (247)
T 3lyl_A 5 EKVALVTGASRGIGF-----EVAHALASKGATVVGTATS 38 (247)
T ss_dssp TCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 478999999999996 5778888999999999875
No 445
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=61.47 E-value=7.4 Score=35.74 Aligned_cols=37 Identities=22% Similarity=0.444 Sum_probs=30.7
Q ss_pred cCCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 82 AGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 82 ~~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+-..++++|+++-+|.|+. +|..|+++|.+|.+++-+
T Consensus 29 ~l~gk~~lVTGas~GIG~a-----ia~~la~~G~~V~~~~r~ 65 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKK-----VALAYAEAGAQVAVAARH 65 (276)
T ss_dssp CCTTCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 3455889999999999974 677888999999999865
No 446
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=61.38 E-value=5.8 Score=33.84 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=15.1
Q ss_pred EEEEcCCCCccHHHHHHHHHH
Q 043873 88 HYMLGGKGGVGKTSCAASLAV 108 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~ 108 (413)
|+++ |.+|+||||+...+..
T Consensus 31 i~v~-G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 31 LAIF-GRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEE-CCTTSSHHHHHHHHHH
T ss_pred EEEE-CCCCCCHHHHHHHHHh
Confidence 4444 8999999999876654
No 447
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=61.22 E-value=5.7 Score=36.14 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=17.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVK 109 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~ 109 (413)
.++.++ |..|+||||+.-.++-.
T Consensus 30 e~~~l~-G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALM-GPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHTC
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCC
Confidence 444444 99999999998888764
No 448
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=61.18 E-value=6.6 Score=35.56 Aligned_cols=34 Identities=18% Similarity=0.427 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++|+++-||.|+. +|..|+++|.+|.+++-+
T Consensus 7 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~ 40 (262)
T 1zem_A 7 GKVCLVTGAGGNIGLA-----TALRLAEEGTAIALLDMN 40 (262)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 4789999999999974 677888999999999865
No 449
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=61.18 E-value=5.3 Score=37.21 Aligned_cols=36 Identities=31% Similarity=0.580 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+++++|+++-||.|+. +|..|++.|.+|.++|-+.
T Consensus 40 ~~k~vlVTGas~GIG~a-----ia~~la~~G~~V~~~~r~~ 75 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRG-----IATVFARAGANVAVAARSP 75 (293)
T ss_dssp TTCEEEETTTTSHHHHH-----HHHHHHHTTCEEEEEESSG
T ss_pred CCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence 45889999999999974 6778899999999998764
No 450
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=61.12 E-value=12 Score=34.53 Aligned_cols=35 Identities=26% Similarity=0.524 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++++|+++-+|.|+. +|..|+++|.+|.+++.+
T Consensus 48 ~~k~vlVTGas~GIG~a-----ia~~la~~G~~V~~~~~~ 82 (294)
T 3r3s_A 48 KDRKALVTGGDSGIGRA-----AAIAYAREGADVAINYLP 82 (294)
T ss_dssp TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEECCG
T ss_pred CCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 35789999999999964 677889999999998765
No 451
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A
Probab=61.00 E-value=8.8 Score=34.64 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=31.6
Q ss_pred hhcCCCcEEEEEcCC--CCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 80 MVAGTQRKHYMLGGK--GGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 80 ~~~~~~~~i~~~s~k--gGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
.+.-..++++|+++- +|.|+ .+|..|++.|.+|++++.+..
T Consensus 15 ~~~l~~k~vlITGas~~~giG~-----~~a~~l~~~G~~v~~~~~~~~ 57 (267)
T 3gdg_A 15 QLSLKGKVVVVTGASGPKGMGI-----EAARGCAEMGAAVAITYASRA 57 (267)
T ss_dssp HHCCTTCEEEETTCCSSSSHHH-----HHHHHHHHTSCEEEECBSSSS
T ss_pred ccCcCCCEEEEECCCCCCChHH-----HHHHHHHHCCCeEEEEeCCcc
Confidence 344456888888887 78886 577888999999999987643
No 452
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=60.96 E-value=5.9 Score=36.48 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=17.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVK 109 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~ 109 (413)
.+++++ |..|+||||+.-.++-.
T Consensus 47 e~~~l~-G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIM-GPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHTC
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCC
Confidence 444444 99999999998887764
No 453
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=60.86 E-value=5.3 Score=38.68 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=17.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAV 108 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~ 108 (413)
..|++. |.||+||||++.++..
T Consensus 34 ~killl-G~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 34 VKILLL-GAGESGKSTFLKQMRI 55 (362)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHH
T ss_pred cEEEEE-CCCCCcHHHHHHHHHH
Confidence 344444 8999999999999854
No 454
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=60.75 E-value=5.1 Score=36.83 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFA 111 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la 111 (413)
.+++++ |..|+||||+...++-.+.
T Consensus 33 e~~~li-G~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISII-GSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEE-CCCCCCHHHHHHHHhcCCC
Confidence 445444 9999999999888776543
No 455
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=60.67 E-value=5.1 Score=36.31 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeE
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIV 119 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vll 119 (413)
.++++ -|..|+||||+...++-.+.-..-+|.+
T Consensus 29 e~~~i-~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (243)
T 1mv5_A 29 SIIAF-AGPSGGGKSTIFSLLERFYQPTAGEITI 61 (243)
T ss_dssp EEEEE-ECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred CEEEE-ECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 44444 4999999999998887655433234544
No 456
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=60.61 E-value=6.3 Score=35.89 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 83 GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 83 ~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
-.+++++|+++-+|.|+. +|..|+++|.+|.+++-+
T Consensus 18 l~~k~vlVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~ 53 (266)
T 4egf_A 18 LDGKRALITGATKGIGAD-----IARAFAAAGARLVLSGRD 53 (266)
T ss_dssp CTTCEEEETTTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 345889999999999974 677888999999999875
No 457
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}
Probab=60.50 E-value=7 Score=34.69 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
|++++|+++-||.|+. ++..|+++|++|.+++-++
T Consensus 1 Mk~vlVtGasg~iG~~-----l~~~L~~~g~~V~~~~r~~ 35 (255)
T 2dkn_A 1 MSVIAITGSASGIGAA-----LKELLARAGHTVIGIDRGQ 35 (255)
T ss_dssp -CEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSS
T ss_pred CcEEEEeCCCcHHHHH-----HHHHHHhCCCEEEEEeCCh
Confidence 3578999999999975 5667788999999998764
No 458
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=60.50 E-value=7.9 Score=35.10 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++|+++-+|.|+. +|..|+++|.+|.++|-+
T Consensus 11 ~k~vlVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~ 44 (264)
T 3ucx_A 11 DKVVVISGVGPALGTT-----LARRCAEQGADLVLAART 44 (264)
T ss_dssp TCEEEEESCCTTHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CcEEEEECCCcHHHHH-----HHHHHHHCcCEEEEEeCC
Confidence 4789999999999974 677888999999998865
No 459
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=60.46 E-value=5.3 Score=34.29 Aligned_cols=15 Identities=47% Similarity=0.729 Sum_probs=12.9
Q ss_pred CCCCccHHHHHHHHH
Q 043873 93 GKGGVGKTSCAASLA 107 (413)
Q Consensus 93 ~kgGvGKtT~a~~lA 107 (413)
|.+||||||+...+.
T Consensus 13 G~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 13 GEQGVGKSTLANIFA 27 (192)
T ss_dssp CSTTSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHh
Confidence 999999999887654
No 460
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=60.43 E-value=5.1 Score=36.76 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 83 GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 83 ~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
-.+++++|+++-+|.|+ .+|..|+++|.+|+++|-+
T Consensus 24 l~gk~~lVTGas~gIG~-----aia~~la~~G~~V~~~~r~ 59 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGR-----AMAEGLAVAGARILINGTD 59 (271)
T ss_dssp CTTCEEEETTCSSHHHH-----HHHHHHHHTTCEEEECCSC
T ss_pred CCCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 34588999999999997 4778889999999998754
No 461
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=60.43 E-value=3.8 Score=42.46 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=27.1
Q ss_pred EEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 88 i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+++.|..|+||||++..+|..+-........++.++
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 3344599999999999999987765544556666654
No 462
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=60.38 E-value=5.2 Score=38.48 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.+++++ |..|+||||++..|+..+
T Consensus 171 ~k~~Iv-G~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAIL-GGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEE-CCTTSHHHHHHHHHHHHT
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHh
Confidence 444444 899999999999988765
No 463
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=60.37 E-value=10 Score=38.20 Aligned_cols=35 Identities=29% Similarity=0.170 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.++|.|++ =.||||++.-++..|...|++|.++-.
T Consensus 108 ~~vI~VTG---TnGKTTT~~ml~~iL~~~g~~~~~~gs 142 (498)
T 1e8c_A 108 LRLVGVTG---TNGKTTTTQLLAQWSQLLGEISAVMGT 142 (498)
T ss_dssp SEEEEEES---SSCHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred CeEEEEeC---CcChHHHHHHHHHHHHhCCCCEEEECC
Confidence 46777764 458999999999999999999987754
No 464
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=60.29 E-value=53 Score=32.76 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=31.7
Q ss_pred ceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccC
Q 043873 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLP 354 (413)
Q Consensus 314 t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~ 354 (413)
+.+++|.....-...++++.+..++..|+|+ -+|+|++--
T Consensus 98 D~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl 137 (482)
T 1wb1_A 98 DLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDN 137 (482)
T ss_dssp CEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTS
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCc
Confidence 5778888776655567778888889999999 899999754
No 465
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=60.26 E-value=7.1 Score=39.59 Aligned_cols=31 Identities=39% Similarity=0.397 Sum_probs=23.1
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
+++.|.+|+||||++..+|..+ +...+.+++
T Consensus 67 vLL~GppGtGKTtLaraIa~~~---~~~~i~i~g 97 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEA---RVPFITASG 97 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEEeh
Confidence 4455999999999999988754 355666664
No 466
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=60.24 E-value=5.5 Score=36.66 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++++|+++-+|.|+ .+|..|+++|.+|.+++-+.
T Consensus 12 ~k~vlITGas~GIG~-----~~a~~L~~~G~~V~~~~r~~ 46 (311)
T 3o26_A 12 RRCAVVTGGNKGIGF-----EICKQLSSNGIMVVLTCRDV 46 (311)
T ss_dssp CCEEEESSCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CcEEEEecCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999999999997 46778889999999998764
No 467
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=60.11 E-value=2.7 Score=40.46 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCccHHHHH-HHHHHHHHHcCCCeeEEecCC
Q 043873 86 RKHYMLGGKGGVGKTSCA-ASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a-~~lA~~la~~g~~vllvd~Dp 124 (413)
..++++.|-=|+||||++ ..|+..+...|. +++.--|
T Consensus 12 ~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g~--vv~trEP 49 (341)
T 1osn_A 12 VLRIYLDGAYGIGKTTAAEEFLHHFAITPNR--ILLIGEP 49 (341)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHTTTTSGGG--EEEECCC
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHhhCCc--EEEEeCC
Confidence 357888999999999999 888888877773 4555555
No 468
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=60.06 E-value=7 Score=35.88 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++++|+++-+|.|+ .+|..|++.|.+|+++|-+.
T Consensus 11 ~k~~lVTGas~gIG~-----aia~~la~~G~~V~~~~~~~ 45 (286)
T 3uve_A 11 GKVAFVTGAARGQGR-----SHAVRLAQEGADIIAVDICK 45 (286)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEECCS
T ss_pred CCEEEEeCCCchHHH-----HHHHHHHHCCCeEEEEeccc
Confidence 478999999999886 57788899999999998763
No 469
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=59.94 E-value=7.2 Score=35.18 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++++|+++-||.|+. +|..|+++|.+|.+++-+.
T Consensus 5 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 39 (254)
T 1hdc_A 5 GKTVIITGGARGLGAE-----AARQAVAAGARVVLADVLD 39 (254)
T ss_dssp CSEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 3789999999999974 6777889999999998653
No 470
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=59.91 E-value=8.5 Score=37.92 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=31.3
Q ss_pred cccccchHHhhc-CCCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCC
Q 043873 71 RETVAGFDEMVA-GTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHP 116 (413)
Q Consensus 71 ~~~~~~~~~~~~-~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~ 116 (413)
..+++.++.+.- +.+.++.++ +-.|+|||+++..+|...++.+..
T Consensus 160 ~tGiraID~l~PigrGQR~lIf-g~~g~GKT~Ll~~Ia~~i~~~~~d 205 (427)
T 3l0o_A 160 IYSTRLIDLFAPIGKGQRGMIV-APPKAGKTTILKEIANGIAENHPD 205 (427)
T ss_dssp CHHHHHHHHHSCCBTTCEEEEE-ECTTCCHHHHHHHHHHHHHHHCTT
T ss_pred hccchhhhhcccccCCceEEEe-cCCCCChhHHHHHHHHHHhhcCCC
Confidence 345666666554 334556666 557999999999999998875444
No 471
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=59.90 E-value=4.8 Score=33.08 Aligned_cols=41 Identities=10% Similarity=-0.087 Sum_probs=24.2
Q ss_pred ceEEEEecCc-cchHHHHHHHHHHHHh----cCCCcceEEEecccCC
Q 043873 314 TEFVIVTIPT-VMAISESSRLHASLRK----ECIPVQRLIVNQVLPP 355 (413)
Q Consensus 314 t~~vlVt~pe-~~~~~ea~r~~~~l~~----~gi~v~gvVvN~v~~~ 355 (413)
+.+++|.... ..+..+....+..+.. .++| .-+|.|+.--.
T Consensus 76 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 121 (171)
T 1upt_A 76 DAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDME 121 (171)
T ss_dssp SEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTST
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCc
Confidence 4677776654 3356666665555443 2444 35788997643
No 472
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=59.86 E-value=5.8 Score=39.01 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEec
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~ 122 (413)
.++|.|++. -||||++.-++..|...|++|.++-.
T Consensus 49 ~~vI~VTGT---nGKtTT~~~l~~iL~~~G~~~g~~~s 83 (422)
T 1w78_A 49 PFVFTVAGT---NGKGTTCRTLESILMAAGYKVGVYSS 83 (422)
T ss_dssp SEEEEEECS---SCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CcEEEEeCC---cChHHHHHHHHHHHHHCCCCEEEECC
Confidence 457777644 58999999999999999999987654
No 473
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=59.83 E-value=5.2 Score=32.68 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=24.0
Q ss_pred ceEEEEecCc-cchHHHHHHHHHHHHhc--CCCcceEEEecccC
Q 043873 314 TEFVIVTIPT-VMAISESSRLHASLRKE--CIPVQRLIVNQVLP 354 (413)
Q Consensus 314 t~~vlVt~pe-~~~~~ea~r~~~~l~~~--gi~v~gvVvN~v~~ 354 (413)
+.+++|.... ..+..+....++.+... +.|+ -+|+|+.--
T Consensus 79 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl 121 (168)
T 1z2a_A 79 QACVLVFSTTDRESFEAISSWREKVVAEVGDIPT-ALVQNKIDL 121 (168)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCE-EEEEECGGG
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECccc
Confidence 4566666654 33456666666666553 4553 478899753
No 474
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=59.76 E-value=8.4 Score=35.19 Aligned_cols=36 Identities=17% Similarity=0.442 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.+++++|+++-+|.|+. +|..|+++|.+|.+++-+.
T Consensus 5 ~~k~~lVTGas~GIG~a-----ia~~la~~G~~V~~~~r~~ 40 (274)
T 3e03_A 5 SGKTLFITGASRGIGLA-----IALRAARDGANVAIAAKSA 40 (274)
T ss_dssp TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCC
T ss_pred CCcEEEEECCCChHHHH-----HHHHHHHCCCEEEEEeccc
Confidence 34789999999999974 6788889999999998764
No 475
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=59.61 E-value=8.1 Score=34.70 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++++|+++-||.|+ .+|..|+++|.+|.+++-+.
T Consensus 12 ~k~vlVTGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 46 (265)
T 2o23_A 12 GLVAVITGGASGLGL-----ATAERLVGQGASAVLLDLPN 46 (265)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECTT
T ss_pred CCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCc
Confidence 478999999999887 46777888999999998764
No 476
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=59.52 E-value=6.8 Score=39.27 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=26.6
Q ss_pred CcccccchHHhhc-CCCcEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 70 PRETVAGFDEMVA-GTQRKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 70 ~~~~~~~~~~~~~-~~~~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
...+++.++.++- ..+.++.++++ .|+|||++..++|...
T Consensus 135 l~TGiraID~l~pigrGQr~~Ifgg-~G~GKt~L~~~Ia~~~ 175 (465)
T 3vr4_D 135 IQTGISAIDHLNTLVRGQKLPVFSG-SGLPHKELAAQIARQA 175 (465)
T ss_dssp CBCSCHHHHTTSCCBTTCBCCEEEC-TTSCHHHHHHHHHHHC
T ss_pred cccCceEEecccccccCCEEEEeCC-CCcChHHHHHHHHHHH
Confidence 3457777776664 23344566644 7999999998877643
No 477
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=59.46 E-value=7.2 Score=35.71 Aligned_cols=35 Identities=20% Similarity=0.488 Sum_probs=29.7
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++++|+++-+|.|+ .+|..|+++|.+|++++.+
T Consensus 30 ~gk~~lVTGas~GIG~-----aia~~la~~G~~V~~~~~~ 64 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGA-----AIAKRLALEGAAVALTYVN 64 (271)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 4588999999999997 5778889999999998765
No 478
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=59.37 E-value=5.5 Score=36.68 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=18.3
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.+++++ |..|+||||+...++-.+
T Consensus 51 ei~~li-G~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVI-GPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHTTSS
T ss_pred CEEEEE-cCCCCcHHHHHHHHHcCC
Confidence 445444 999999999988877554
No 479
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Probab=59.36 E-value=7.9 Score=35.31 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=28.9
Q ss_pred CcEEEEEcCC--CCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGK--GGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~k--gGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++++|+++- ||.|+ .+|..|+++|.+|.+++-+.
T Consensus 6 ~k~vlVTGas~~~gIG~-----~~a~~l~~~G~~V~~~~r~~ 42 (275)
T 2pd4_A 6 GKKGLIVGVANNKSIAY-----GIAQSCFNQGATLAFTYLNE 42 (275)
T ss_dssp TCEEEEECCCSTTSHHH-----HHHHHHHTTTCEEEEEESST
T ss_pred CCEEEEECCCCCCcHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3678888887 89997 46778889999999998765
No 480
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=59.32 E-value=5.5 Score=35.75 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=18.1
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.+++++ |+.|+||||+...++-.+
T Consensus 35 e~~~i~-G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVA-GSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHTTSS
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCC
Confidence 444444 999999999988877654
No 481
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=59.29 E-value=7.2 Score=34.37 Aligned_cols=35 Identities=23% Similarity=0.492 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
++++|+++-||.|+ ++|..|+++|++|.+++-++.
T Consensus 3 k~vlVtGasggiG~-----~la~~l~~~G~~V~~~~r~~~ 37 (242)
T 1uay_A 3 RSALVTGGASGLGR-----AAALALKARGYRVVVLDLRRE 37 (242)
T ss_dssp CEEEEETTTSHHHH-----HHHHHHHHHTCEEEEEESSCC
T ss_pred CEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEccCcc
Confidence 67899999999996 466778888999999987653
No 482
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=59.23 E-value=7.7 Score=37.54 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=25.3
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEe
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd 121 (413)
+++.+.-|+|||.+....+..+...|.+++++-
T Consensus 39 ~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~ 71 (414)
T 3oiy_A 39 FTMVAPTGVGKTTFGMMTALWLARKGKKSALVF 71 (414)
T ss_dssp EECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 456689999999966666666666788888775
No 483
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=59.18 E-value=7.4 Score=34.93 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++++|+++-||.|+ ++|..|+++|.+|.+++-++
T Consensus 7 ~k~vlITGasggiG~-----~la~~l~~~G~~V~~~~r~~ 41 (264)
T 2pd6_A 7 SALALVTGAGSGIGR-----AVSVRLAGEGATVAACDLDR 41 (264)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 368999999999997 46777888999999998653
No 484
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2
Probab=59.15 E-value=7.5 Score=35.48 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++++|+++-||.|+. +|..|+++|.+|.++|-++
T Consensus 9 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 43 (270)
T 1yde_A 9 GKVVVVTGGGRGIGAG-----IVRAFVNSGARVVICDKDE 43 (270)
T ss_dssp TCEEEEETCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 4789999999999974 6777889999999998653
No 485
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=59.15 E-value=11 Score=37.90 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=30.1
Q ss_pred cccccchHHhhc-CCCcEEEEEcCCCCccHHHHHHHHHHHHHHc
Q 043873 71 RETVAGFDEMVA-GTQRKHYMLGGKGGVGKTSCAASLAVKFANH 113 (413)
Q Consensus 71 ~~~~~~~~~~~~-~~~~~i~~~s~kgGvGKtT~a~~lA~~la~~ 113 (413)
..+++.++.++- ..+.++.++ +-.|+|||++...++...++.
T Consensus 138 ~TGir~ID~l~pigkGQr~~If-gg~G~GKT~L~~~i~~~~~~~ 180 (482)
T 2ck3_D 138 VTGIKVVDLLAPYAKGGKIGLF-GGAGVGKTVLIMELINNVAKA 180 (482)
T ss_dssp CCSCHHHHHHSCEETTCEEEEE-ECTTSSHHHHHHHHHHHTTTT
T ss_pred ccceEEEecccccccCCeeeee-cCCCCChHHHHHHHHHhhHhh
Confidence 456777776664 233445555 667899999999999987654
No 486
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=59.15 E-value=7.5 Score=35.25 Aligned_cols=34 Identities=26% Similarity=0.526 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++|+++-||.|+. +|..|+++|.+|.+++-+
T Consensus 13 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~ 46 (267)
T 1iy8_A 13 DRVVLITGGGSGLGRA-----TAVRLAAEGAKLSLVDVS 46 (267)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 4789999999999975 677888899999999865
No 487
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=59.09 E-value=7.6 Score=35.07 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++|+++-||.|+. +|..|+++|.+|.+++-+
T Consensus 7 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~ 40 (263)
T 3ai3_A 7 GKVAVITGSSSGIGLA-----IAEGFAKEGAHIVLVARQ 40 (263)
T ss_dssp TCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCchHHHH-----HHHHHHHCCCEEEEEcCC
Confidence 4789999999999974 677788899999998865
No 488
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=59.09 E-value=30 Score=35.11 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=33.8
Q ss_pred CceEEEEecCccchHHHHHHHHHHHHhcCCCcceEEEecccCC
Q 043873 313 ATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP 355 (413)
Q Consensus 313 ~t~~vlVt~pe~~~~~ea~r~~~~l~~~gi~v~gvVvN~v~~~ 355 (413)
.+.+++|..+......++...+..+...++|+ -+|+|++--.
T Consensus 106 aD~allVvDa~~g~~~~t~~~~~~~~~~~iPi-ivviNK~Dl~ 147 (528)
T 3tr5_A 106 VDSALMVIDAAKGVEPRTIKLMEVCRLRHTPI-MTFINKMDRD 147 (528)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHHTTTCCE-EEEEECTTSC
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEeCCCCc
Confidence 35788888888777778888999999999985 4889998653
No 489
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}
Probab=59.05 E-value=6.3 Score=35.63 Aligned_cols=34 Identities=15% Similarity=0.394 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++|+++-||.|+. +|..|+++|.+|.+++-+
T Consensus 5 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~ 38 (260)
T 2qq5_A 5 GQVCVVTGASRGIGRG-----IALQLCKAGATVYITGRH 38 (260)
T ss_dssp TCEEEESSTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCEEEEeCCCchHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 4789999999999974 677888999999998865
No 490
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=59.01 E-value=5 Score=38.48 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=27.7
Q ss_pred EEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCCC
Q 043873 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125 (413)
Q Consensus 87 ~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp~ 125 (413)
.++++-|-=|+||||.+..|+..|...+ +| ++--.|.
T Consensus 8 ~fI~~EG~dGaGKTT~~~~La~~L~~~~-~v-~~trEPg 44 (334)
T 1p6x_A 8 VRIYLDGVYGIGKSTTGRVMASAASGGS-PT-LYFPEPM 44 (334)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGGGCSS-CE-EEECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccCC-cE-EEEeCCC
Confidence 5777889999999999999999887643 33 4444443
No 491
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=59.00 E-value=7.5 Score=35.18 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.++++|+++-||.|+ ++|..|+++|++|.+++-+
T Consensus 16 ~k~vlITGasggiG~-----~~a~~l~~~G~~V~~~~r~ 49 (278)
T 2bgk_A 16 DKVAIITGGAGGIGE-----TTAKLFVRYGAKVVIADIA 49 (278)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEcCC
Confidence 378999999999997 4677888899999998765
No 492
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=58.96 E-value=5.7 Score=36.49 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
.+++++|+++-+|.|+. +|..|+++|.+|.++|-+
T Consensus 27 ~~k~~lVTGas~GIG~a-----ia~~la~~G~~V~~~~r~ 61 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRA-----VAVALAGAGYGVALAGRR 61 (272)
T ss_dssp -CCEEEETTTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEECC
Confidence 45789999999999974 677888999999999865
No 493
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=58.91 E-value=5.8 Score=36.41 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.+++++ |..|+||||+...++-.+
T Consensus 47 e~~~i~-G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALV-GHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHTTSS
T ss_pred CEEEEE-CCCCCCHHHHHHHHhccC
Confidence 444444 999999999998887654
No 494
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=58.85 E-value=7.6 Score=35.41 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
.++++|+++-||.|+. +|..|++.|.+|.+++-++
T Consensus 21 ~k~vlVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~~ 55 (273)
T 1ae1_A 21 GTTALVTGGSKGIGYA-----IVEELAGLGARVYTCSRNE 55 (273)
T ss_dssp TCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCcchHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 4789999999999975 6778889999999998653
No 495
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=58.80 E-value=7.8 Score=34.84 Aligned_cols=35 Identities=14% Similarity=0.372 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecCC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~Dp 124 (413)
+++++|+++-||.|+. +|..|+++|.+|.+++-++
T Consensus 19 ~k~vlVTGas~gIG~~-----~a~~l~~~G~~V~~~~r~~ 53 (249)
T 1o5i_A 19 DKGVLVLAASRGIGRA-----VADVLSQEGAEVTICARNE 53 (249)
T ss_dssp TCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEcCCH
Confidence 4789999999999975 6777888999999998764
No 496
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=58.77 E-value=6.9 Score=36.67 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=24.5
Q ss_pred EEEcCCCCccHHHHHHHHHHHHHHc--CCCeeEEe
Q 043873 89 YMLGGKGGVGKTSCAASLAVKFANH--GHPTIVIS 121 (413)
Q Consensus 89 ~~~s~kgGvGKtT~a~~lA~~la~~--g~~vllvd 121 (413)
+++.+.-|+|||+++...+..+... +.+++++-
T Consensus 47 ~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~ 81 (367)
T 1hv8_A 47 IVAQARTGSGKTASFAIPLIELVNENNGIEAIILT 81 (367)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEEC
T ss_pred EEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEc
Confidence 4556899999999988877766543 56777664
No 497
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=58.74 E-value=13 Score=35.11 Aligned_cols=33 Identities=24% Similarity=0.140 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeE
Q 043873 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIV 119 (413)
Q Consensus 84 ~~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vll 119 (413)
..++|.|++ -.||||++.-++..|...|+++.+
T Consensus 107 ~~~~IaVTG---TnGKTTTt~ll~~iL~~~g~~~~~ 139 (326)
T 3eag_A 107 HHWVLGVAG---THGKTTTASMLAWVLEYAGLAPGF 139 (326)
T ss_dssp GSEEEEEES---SSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCEEEEEC---CCCHHHHHHHHHHHHHHcCCCceE
Confidence 456777774 469999999999999999998753
No 498
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=58.73 E-value=5.1 Score=33.48 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=23.4
Q ss_pred ceEEEEecCc-cchHHHHHHHHHHHHh----cCCCcceEEEecccC
Q 043873 314 TEFVIVTIPT-VMAISESSRLHASLRK----ECIPVQRLIVNQVLP 354 (413)
Q Consensus 314 t~~vlVt~pe-~~~~~ea~r~~~~l~~----~gi~v~gvVvN~v~~ 354 (413)
+.+++|.... ..+..+....+..+.. .+.| .-+|.|+.--
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 131 (183)
T 1moz_A 87 AAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQ 131 (183)
T ss_dssp EEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCC
Confidence 4566666553 4456666666655543 2333 3578899764
No 499
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=58.72 E-value=7.6 Score=35.36 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCccHHHHHHHHHHHHHHcCCCeeEEecC
Q 043873 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123 (413)
Q Consensus 85 ~~~i~~~s~kgGvGKtT~a~~lA~~la~~g~~vllvd~D 123 (413)
+++++|+++-||.|+. +|..|+++|.+|.+++-+
T Consensus 21 ~k~~lVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~ 54 (267)
T 1vl8_A 21 GRVALVTGGSRGLGFG-----IAQGLAEAGCSVVVASRN 54 (267)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 4789999999999974 667788899999998865
No 500
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=58.66 E-value=5.7 Score=35.91 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCccHHHHHHHHHHHH
Q 043873 86 RKHYMLGGKGGVGKTSCAASLAVKF 110 (413)
Q Consensus 86 ~~i~~~s~kgGvGKtT~a~~lA~~l 110 (413)
.++.++ |..|+||||+...++-.+
T Consensus 33 e~~~l~-G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLI-GANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHTTSS
T ss_pred CEEEEE-CCCCCCHHHHHHHHhCCC
Confidence 444444 999999999988877654
Done!