RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043873
(413 letters)
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 307 bits (787), Expect = e-102
Identities = 103/339 (30%), Positives = 172/339 (50%), Gaps = 27/339 (7%)
Query: 75 AGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQ 134
+ ++ T K +GGKGGVGKT+ + SLA++ + ++ISTDPAH+LSD+F
Sbjct: 8 GTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGT 67
Query: 135 DLSGGTLVPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQ 194
G V G D L A+EI+P + +E + + L
Sbjct: 68 KF-GKDARKVPGFD-NLSAMEIDPNLSIQEMT----------EQADQQNPNNPLS----- 110
Query: 195 LGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDF 254
+ + L PG+DEA+A +++++ ++S +++ ++FDTAPTGHTLR L+ P
Sbjct: 111 ----GMMQDLAFTIPGIDEALAFAEILKQIKSMEFD---CVIFDTAPTGHTLRFLNFPTV 163
Query: 255 LDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDAT 314
L+ ++GK+ L + + S+ G +QD+ K+E +R +++V F++PD T
Sbjct: 164 LEKALGKLGGLSSRFGPMINQMGSIMGVNANEQDLF-GKMESMRANISEVNKQFKNPDLT 222
Query: 315 EFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVL 374
FV V I +++ E+ R+ L I ++VNQ+L + C C +RK Q + L
Sbjct: 223 TFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYL 282
Query: 375 ETIMSDPQLANLRLVQAPLVDVEIRGVPALKFMGDMIWK 413
I + +V+ P V E+RG ALK +M+ K
Sbjct: 283 AQIEEL--YEDFHVVKVPQVPAEVRGTEALKSFSEMLVK 319
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 292 bits (748), Expect = 2e-96
Identities = 105/345 (30%), Positives = 164/345 (47%), Gaps = 25/345 (7%)
Query: 77 FDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFA--NHGHPTIVISTDPAHSLSDSFAQ 134
++ T K +GGKGGVGKT+ + S+A++ A ++ISTDPAH+LSD+F +
Sbjct: 9 LHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGE 68
Query: 135 DLSGGTLVPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQ 194
G V G++ L +EI+P A ++ + + L
Sbjct: 69 KF-GKDARKVTGMN-NLSCMEIDPSAALKDMNDMAVSR------ANNNGSDGQGDDLGSL 120
Query: 195 LGELKLGELLDTPPPGLDEAIAISKVMQFVESQQY---NMFTRIVFDTAPTGHTLRLLSL 251
L L +L PG+DEA++ +VM+ ++ Q+ F ++FDTAPTGHTLR L L
Sbjct: 121 LQGGALADLT-GSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTLRFLQL 179
Query: 252 PDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDP 311
P+ L + K ++ KL ++F + S K+ +L+ + +R F DP
Sbjct: 180 PNTLSKLLEKFGEITNKLGPMLNSFMGAGNVD------ISGKLNELKANVETIRQQFTDP 233
Query: 312 DATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASD---CKFCAMKRK 368
D T FV V I +++ E+ RL L + V +IVNQ+L CK C + K
Sbjct: 234 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWK 293
Query: 369 DQMRVLETIMSDPQLANLRLVQAPLVDVEIRGVPALKFMGDMIWK 413
Q + L+ I D + +V+ PL EIRG+ L + K
Sbjct: 294 MQKKYLDQI--DELYEDFHVVKMPLCAGEIRGLNNLTKFSQFLNK 336
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 290 bits (744), Expect = 3e-96
Identities = 118/332 (35%), Positives = 192/332 (57%), Gaps = 26/332 (7%)
Query: 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVP 143
+ +GGKGGVGKT+ +A+ A+ A G T+VISTDPAHSLSDS +++ G T
Sbjct: 12 GKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHSLSDSLEREI-GHTPTK 70
Query: 144 VEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGEL 203
+ L+A+EI+PE A EE++ Q + MGL ML DQ+
Sbjct: 71 ITE---NLYAVEIDPEVAMEEYQAKLQ-------EQAAMNPGMGLDMLQDQMDMA----- 115
Query: 204 LDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMM 263
+ PG+DEA A + ++++ + +Y+ ++FDTAPTGHTLRLLS P+ +D+ +GKM+
Sbjct: 116 --SMSPGIDEAAAFDQFLRYMTTDEYD---IVIFDTAPTGHTLRLLSFPEIMDSWVGKMI 170
Query: 264 KLKKKLASTTSAFKSVFGK--EKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTI 321
K+++++ S AFK++ +++++D A +E ++++ R++ DP+ T F +V I
Sbjct: 171 KIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVI 230
Query: 322 PTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDP 381
P M+I ES R +L K I +IVNQVLP SDC+FC +RK Q L+ I
Sbjct: 231 PEEMSIYESERAMKALEKYSIHADGVIVNQVLPE-ESDCEFCNARRKLQQERLKQIREK- 288
Query: 382 QLANLRLVQAPLVDVEIRGVPALKFMGDMIWK 413
++ + + PL+ E +G+ L+ + + ++
Sbjct: 289 -FSDKVVAEVPLLKKEAKGIETLEKIAEQLYG 319
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 289 bits (740), Expect = 1e-95
Identities = 107/339 (31%), Positives = 171/339 (50%), Gaps = 27/339 (7%)
Query: 78 DEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLS 137
++ + +GGKGGVGKT+ + SLA++ A +++STDPAH+LSD+F+Q
Sbjct: 8 QSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKF- 66
Query: 138 GGTLVPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGE 197
G VEG D L+A+EI+P + ++ G G +G G +M +
Sbjct: 67 GKEARLVEGFD-NLYAMEIDPNGSMQDLLAGQTGDGDAGMGGVGVMQDL----------- 114
Query: 198 LKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDA 257
PG+DEA++ ++V++ V S Y IVFDTAPTGHTLR L P L+
Sbjct: 115 -------AYAIPGIDEAMSFAEVLKQVNSLSYE---TIVFDTAPTGHTLRFLQFPTVLEK 164
Query: 258 SIGKMMKLKKKLASTTSAFKSVFGKEKKQQ--DVASDKVEQLRERMAKVRDLFRDPDATE 315
++ K+ +L + S + G Q +K++ LR +++V F+D T
Sbjct: 165 ALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTT 224
Query: 316 FVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPP-SASDCKFCAMKRKDQMRVL 374
FV V IP +++ E+ R+ L I ++VNQ+L P SDC+ C +R+ Q + L
Sbjct: 225 FVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYL 284
Query: 375 ETIMSDPQLANLRLVQAPLVDVEIRGVPALKFMGDMIWK 413
+ I +V+ PL+ E+RG L+ +M+ K
Sbjct: 285 DQIEELYD-EEFNVVKMPLLVEEVRGKERLEKFSEMLIK 322
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
{Debaryomyces hansenii}
Length = 348
Score = 287 bits (735), Expect = 9e-95
Identities = 103/351 (29%), Positives = 169/351 (48%), Gaps = 40/351 (11%)
Query: 76 GFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKF--ANHGHPTIVISTDPAHSLSDSFA 133
+ +V K +GGKGGVGKT+ ++S+AV+ A ++ISTDPAH+LSD+F
Sbjct: 8 TLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFC 67
Query: 134 QDLSGGTLVPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLAD 193
Q G VEG+ L +EI+PE A + + + + M++D
Sbjct: 68 QKF-GKDARKVEGLP-NLSCMEIDPEAAMSDLQQQASQYNND-------PNDPLKSMMSD 118
Query: 194 QLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNM---------FTRIVFDTAPTGH 244
G + PG+DEA++ +V++ +++Q+ + I+FDTAPTGH
Sbjct: 119 MTGSI----------PGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGH 168
Query: 245 TLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKV 304
TLR L LP L+ + K L KL S +K+ ++++ +++V
Sbjct: 169 TLRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQ------QDIFEKLNEVQKNVSEV 222
Query: 305 RDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASD--CKF 362
+ F +P+ T F+ V I +++ E+ R+ L + V ++VNQ+L D CK
Sbjct: 223 NEQFTNPELTTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKR 282
Query: 363 CAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDVEIRGVPALKFMGDMIWK 413
C + K Q + L+ + + LV+ PL+ EIRGV LK + K
Sbjct: 283 CESRWKMQKKYLDQMGE--LYEDYHLVKMPLLGCEIRGVENLKKFSKFLLK 331
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 287 bits (735), Expect = 9e-95
Identities = 108/340 (31%), Positives = 188/340 (55%), Gaps = 27/340 (7%)
Query: 78 DEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLS 137
++ K+ M GGKGGVGKT+ +A+ V A G +++STDPAHSL D F Q+
Sbjct: 18 KKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEF- 76
Query: 138 GGTLVPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGE 197
G V+G D L+ +EI+P+KA EE++ + + ++ LG + + E
Sbjct: 77 GHEPTKVKGYD-NLYVVEIDPQKAMEEYKEKLK---------AQIEENPFLGEMLEDQLE 126
Query: 198 LKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDA 257
+ PG DE+ A +++++S +++ ++FDTAPTGHTLR L +P+ +D
Sbjct: 127 M------AALSPGTDESAAFDVFLKYMDSNEFD---VVIFDTAPTGHTLRFLGMPEVMDK 177
Query: 258 SIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASD----KVEQLRERMAKVRDLFRDPDA 313
+ K++KL+K+++ K + K +D+ D ++E+++ER+ + R++ DP+
Sbjct: 178 YMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPER 237
Query: 314 TEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRV 373
T F +V IP M+I ES R +L+K IP+ +IVNQ++P C FC +R+ Q++
Sbjct: 238 TAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDV-QCDFCRARRELQLKR 296
Query: 374 LETIMSDPQLANLRLVQAPLVDVEIRGVPALKFMGDMIWK 413
LE I + + + PL+ E +G+ LK + +++
Sbjct: 297 LEMIKE--KFGDKVIAYVPLLRTEAKGIETLKQIAKILYG 334
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 265 bits (679), Expect = 2e-83
Identities = 86/330 (26%), Positives = 136/330 (41%), Gaps = 40/330 (12%)
Query: 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVP 143
+ GKGGVGKTS + + A++ A G +++STDPA ++ F+Q + G T+
Sbjct: 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTI-GNTIQA 64
Query: 144 VEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGEL 203
+ V L ALEI+P+ A +++R D +K ++ + + +QL E+
Sbjct: 65 IASVP-GLSALEIDPQAAAQQYRARIV------DPIKGVLPDDVVSSINEQLSGACTTEI 117
Query: 204 LDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMM 263
DE + + F I+FDTAPTGHT+RLL LP + I
Sbjct: 118 -----AAFDEFTGLLTDASLLTR-----FDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNP 167
Query: 264 KLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPT 323
+ L +E+ RE+ A + DP T V+V
Sbjct: 168 EGASCLGPM-------------------AGLEKQREQYAYAVEALSDPKRTRLVLVARLQ 208
Query: 324 VMAISESSRLHASLRKECIPVQRLIVNQVLPPS-ASDCKFCAMKRKDQMRVLETIMSDPQ 382
+ E +R H L + Q L++N VLP + A++ A + + L +
Sbjct: 209 KSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANL--PAD 266
Query: 383 LANLRLVQAPLVDVEIRGVPALKFMGDMIW 412
LA L L V + GV AL +
Sbjct: 267 LAGLPTDTLFLQPVNMVGVSALSRLLSTQP 296
Score = 238 bits (608), Expect = 6e-73
Identities = 74/358 (20%), Positives = 129/358 (36%), Gaps = 67/358 (18%)
Query: 54 YRIPLKSPFQVRSISTPRETVAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANH 113
+ S + +++ + +A + ML GKGGVGKT+ AA++AV+ A+
Sbjct: 295 QPVASPSSDEYLQQRPDIPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADM 354
Query: 114 GHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKAREEFRTASQGSG 173
G + ++DPA LS + L+ L I+P + E +R +
Sbjct: 355 GFDVHLTTSDPAAHLSMTLNGSLNN------------LQVSRIDPHEETERYRQHVLETK 402
Query: 174 GSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFT 233
G +D G +L D P +E + +
Sbjct: 403 G------KELDEAGKRLLE-----------EDLRSPCTEEIAVFQAFSRVIREAGKR--- 442
Query: 234 RIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDK 293
+V DTAPTGHTL LL I K M
Sbjct: 443 FVVMDTAPTGHTLLLLDATGAYHREIAKKMG----------------------------- 473
Query: 294 VEQLRERMAKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVL 353
+ L +DP+ T+ ++VT+P + E++ L A L + I I+N L
Sbjct: 474 ---EKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSL 530
Query: 354 PPSASDCKFCAMKRKDQMRVLETIMSDPQLANLRLVQAPLVDVEIRGVPALKFMGDMI 411
+ + M+ + ++ +E++ + R+ P++ E G+ LK +
Sbjct: 531 SIADTRSPLLRMRAQQELPQIESVK---RQHASRVALVPVLASEPTGIDKLKQLAGHH 585
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 208 bits (530), Expect = 9e-64
Identities = 51/314 (16%), Positives = 100/314 (31%), Gaps = 34/314 (10%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVIS-TDPAHSLSDSFAQDLSGGTLVPVEGVDSPL 151
GK GV +T A + A A+ G ++ +P Q L+ P + + L
Sbjct: 9 GKSGVARTKIAIAAAKLLASQGKRVLLAGLAEPVLP--LLLEQTLTP---DPQQ-IAPNL 62
Query: 152 FALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGL 211
++ E + L + + +L L PG+
Sbjct: 63 EVVQFQSSVLLERNWEEVKKLEAQ-----YLRTPIIKEVYGQELVVL----------PGM 107
Query: 212 DEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKK--- 268
D A+A++ + ++ S +Y+ IV+D TLR+L LP+ L + + +L
Sbjct: 108 DSALALNAIREYDASGKYD---TIVYDGTGDAFTLRMLGLPESLSWYVRRFRQLFVNSDL 164
Query: 269 -----LASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPT 323
+ S F D + Q+ + K ++ DP +VT
Sbjct: 165 GKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTAD 224
Query: 324 VMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQL 383
+ + L S ++ + + +I +F + + + P +
Sbjct: 225 PLEVVSVRYLWGSAQQIGLTIGGVIQVSSQTEGDLSAEFTPLSVT-VVPDVTKGDWQPLI 283
Query: 384 ANLRLVQAPLVDVE 397
L
Sbjct: 284 DALPNFVEQAEQAP 297
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.4 bits (161), Expect = 7e-12
Identities = 62/503 (12%), Positives = 130/503 (25%), Gaps = 169/503 (33%)
Query: 2 GSRRLASFSLACISGASSRKTSMAMLALFSKS---QNYTSL-------CR----IARSFE 47
G+ RL F M+ F + NY L R + R +
Sbjct: 63 GTLRL--FWTLLSKQEE-------MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 48 FVSAPLYR-IPLKSPFQVRSISTPR-ETVAGFDEMVAGTQRKHYM-LGGKGGVGKTSCAA 104
LY + + + V R + + + + + + G G GKT A
Sbjct: 114 EQRDRLYNDNQVFAKYNV-----SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 105 SLA---------------VKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDS 149
+ + N P V+ + L + + D
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKLLYQIDPNWT-------SRSDH 219
Query: 150 PLFALEINPEKAREEFRTASQGSGGSG-----DGMKD--LMDSMGLG--ML--------A 192
+++ + E R + +++ ++ L +L
Sbjct: 220 S-SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 193 DQLGELKLGEL-LDTPPPGLDEAIAISKVMQFVESQQYNMFTRIV---FDTAP----TGH 244
D L + LD L E + + + + P T +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPD----------EVKS--LLLKYLDCRPQDLPREVLTTN 326
Query: 245 TLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKV 304
LS+ I + + + +T +K V K + + L A+
Sbjct: 327 PR-RLSI-------IAESI---RDGLATWDNWKHV--NCDKLTTIIESSLNVLEP--AEY 371
Query: 305 RDLFRDPDATEFVI----VTIPT-VMAI----------------------------SESS 331
R +F + IPT ++++ +
Sbjct: 372 RKMFDR-----LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 332 RLHA---SLRKEC---IPVQRLIVNQVLPPSASDCKFCAMKRKDQ---------MRVLET 376
+ + L+ + + R IV+ P D DQ ++ +E
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE- 485
Query: 377 IMSD-----PQL-ANLRLVQAPL 393
+ + + R ++ +
Sbjct: 486 -HPERMTLFRMVFLDFRFLEQKI 507
Score = 32.5 bits (73), Expect = 0.31
Identities = 24/189 (12%), Positives = 50/189 (26%), Gaps = 58/189 (30%)
Query: 232 FTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAF------------KSV 279
+ + H ++ D + ++ L K F S
Sbjct: 41 MPKSILSKEEIDH---IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 280 FGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMAISESSRLHASLRK 339
E++Q + + + R+R+ +F + V+ + + LR+
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN------VSRL---------QPYLKLRQ 142
Query: 340 ---ECIPVQRLIVN-------QVLPPSA-SDCKF-CAM----------KRKDQMRVLETI 377
E P + ++++ + K C M VLE
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-- 200
Query: 378 MSDPQLANL 386
L L
Sbjct: 201 ----MLQKL 205
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA
segregation, unknown function; HET: ADP; 1.80A
{Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Length = 206
Score = 50.8 bits (122), Expect = 1e-07
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 94 KGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEG 146
KGG GKT+ ++A + G+ V+ TDP SL++ + +
Sbjct: 10 KGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAAS 62
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 49.4 bits (118), Expect = 6e-07
Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 21/136 (15%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSF-AQDLSGGTLVPVEG----- 146
GKGGVGKT+ AA L A+ + DP L + + P+
Sbjct: 7 GKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLGLSIEEAYAITPLIEMKDEI 66
Query: 147 ----VDSPLFALEINPEKAREEFRTASQG------SGGSGDGMKDLMDSMGLGMLADQLG 196
D L L + +++ G G L +
Sbjct: 67 REKTGDGGLLILNPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCREN-SFLGSVVS 125
Query: 197 ELKLGE----LLDTPP 208
L L + ++D
Sbjct: 126 ALFLDKKEAVVMDMGA 141
Score = 36.3 bits (84), Expect = 0.011
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 3/93 (3%)
Query: 313 ATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMR 372
+ V P + +I + I R ++N+V K + +
Sbjct: 154 VDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNIKEEK---LIKKHLPEDK 210
Query: 373 VLETIMSDPQLANLRLVQAPLVDVEIRGVPALK 405
+L I + L L + L
Sbjct: 211 ILGIIPYNELFIELSLKGEEIWQSTNPAFVNLH 243
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 45.7 bits (108), Expect = 2e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124
GGVG ++ AA+ A+ AN G ++ +
Sbjct: 151 PCGGVGTSTVAAACAIAHANMGKKVFYLNIEQ 182
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 7e-05
Identities = 41/283 (14%), Positives = 83/283 (29%), Gaps = 101/283 (35%)
Query: 112 NHGH--PTIVISTD---PAHSLSDSFAQDLSGGTLVPVEGVDSPLFALEINPEKARE--- 163
+HG +++ T A L + F + L P EG FA + P E
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILP----EPTEG-----FAADDEPTTPAELVG 62
Query: 164 EFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQF 223
+F LG ++ + K+G+ ++ +
Sbjct: 63 KF----------------------LGYVSSLVEPSKVGQFDQ----------VLNLCLTE 90
Query: 224 VESQQYNMFTR---IVFDTAPTGHTLRLLSLPDFLDASIGKMMKL------------KKK 268
E+ + I H L L D ++ K +L +
Sbjct: 91 FENC----YLEGNDI--------HAL-AAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 269 LASTTSA-FKS----------VFGKEKKQQDVASDKVEQLRERMAKVRDLFRD--PDATE 315
+ SA F++ +FG Q D E+LR+ L++ +
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFG----GQGNTDDYFEELRD-------LYQTYHVLVGD 186
Query: 316 FVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSAS 358
+ + T+ + ++ + + + + + N P
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Score = 29.2 bits (65), Expect = 3.6
Identities = 17/132 (12%), Positives = 31/132 (23%), Gaps = 46/132 (34%)
Query: 22 TSMAMLALFSKSQN---------------YTSLCRIARSFEFVSAPLYRIPLKSPFQVRS 66
A KS+ Y +L +A S + + V
Sbjct: 1739 MEKAAFEDL-KSKGLIPADATFAGHSLGEYAALASLADVMSIESL----VEV-----VFY 1788
Query: 67 ISTPR-ETVAGFDEMVAGTQRKHYMLG-GKGGVGKTSCAASLA-------------VKFA 111
R T+ + + M+ G V + +L V+
Sbjct: 1789 ----RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 112 NHGHP--TIVIS 121
N+ V +
Sbjct: 1845 NYNVENQQYVAA 1856
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell
division inhibitor, MINC, MINE, cell hydrolase; HET:
ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Length = 260
Score = 43.0 bits (102), Expect = 7e-05
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
GKGGVGKT+ +A++A A G T+VI
Sbjct: 10 GKGGVGKTTSSAAIATGLAQKGKKTVVIDFA 40
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 43.0 bits (102), Expect = 7e-05
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
GKGG GKT+ A+L V A GH ++ D
Sbjct: 10 GKGGTGKTTITANLGVALAQLGHDVTIVDAD 40
Score = 30.2 bits (69), Expect = 1.1
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 313 ATEFVIVTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMR 372
A E ++V P + +I++ + + V ++VN++ M + +
Sbjct: 133 AQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGI------EMAKNEIEA 186
Query: 373 VLE-----TIMSDPQLANLRLVQAPLVDVEIRGVPALKFM 407
+LE I DP++ P+V A +
Sbjct: 187 ILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARAIV 226
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 41.6 bits (98), Expect = 2e-04
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 94 KGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVE 145
KGGVGKT+ A L+ A G T++I DP S + + +V
Sbjct: 9 KGGVGKTTTAVHLSAYLALQGE-TLLIDGDPNRSATGWGKRGSLPFKVVDER 59
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered,
protein-ADP complex, cell cycle, hydrolase; HET: ADP;
2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A*
1ion_A*
Length = 237
Score = 41.3 bits (98), Expect = 2e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
GKGG GKT+ A+L+V + G + + D
Sbjct: 10 GKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 38.0 bits (89), Expect = 0.003
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 92 GGKGGVGKTSCAASLAVKFANHGHPTIVI 120
KGG G + AA+ A + ++
Sbjct: 11 SAKGGDGGSCIAANFAFALSQEPDIHVLA 39
Score = 29.9 bits (68), Expect = 1.3
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 313 ATEFVIVTIPTVMAISESSRLHASLRKECIPVQ--RLIVNQV 352
E IVT P++ ++ + +L ++ P+ +I+N+
Sbjct: 141 LDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRA 182
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Length = 361
Score = 37.9 bits (88), Expect = 0.004
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 94 KGGVGKTSCAASLAVKFANHGHPTIVISTDP 124
KGGVGKT+ + ++A FA G + + DP
Sbjct: 10 KGGVGKTTLSTNVAHYFALQGKRVLYVDCDP 40
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome
segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A*
2bek_A*
Length = 257
Score = 37.1 bits (87), Expect = 0.006
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 94 KGGVGKTSCAASLAVKFANHGHPTIVISTDP 124
KGGVGKT+ A +LA A G +++ DP
Sbjct: 15 KGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter
vibrioides} PDB: 2xj9_A* 2xit_A
Length = 286
Score = 37.0 bits (86), Expect = 0.008
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 94 KGGVGKTSCAASLAVKFANHGHPTIVISTDP 124
KGG GK++ A L G VI D
Sbjct: 13 KGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Length = 262
Score = 36.0 bits (84), Expect = 0.014
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 93 GKGGVGKTSCAASLAVKFANHGH 115
GKGGVGK++ A LAV +A G
Sbjct: 26 GKGGVGKSTVTALLAVHYARQGK 48
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium
pasteurianum} SCOP: c.37.1.10
Length = 269
Score = 35.0 bits (81), Expect = 0.029
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDS 131
GKGG+GK++ +L G +V+ DP DS
Sbjct: 8 GKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA---DS 43
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 34.5 bits (80), Expect = 0.054
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 94 KGGVGKTSCAASLAVKFANHGHPTIVISTDP 124
KGGVGK+ + A ++I D
Sbjct: 45 KGGVGKSKLSTMFAYLTDKLNLKVLMIDKDL 75
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 33.5 bits (77), Expect = 0.064
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 32 KSQNYTSLCRIARSFEFVSAPLYRIPLKSPFQVRSISTPRETVAGFDEMVAGTQRKHYML 91
+ ++ + R A L + L ++++I VA ++ + K L
Sbjct: 5 RQESLIQSMFMPREIL--RASLSDVDLNDDGRIKAIRFAERFVAEYEPG---KKMKGLYL 59
Query: 92 GGKGGVGKTSCAASLAVKFANHGHPTIVIST 122
G GVGKT A++A + A ++++
Sbjct: 60 HGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 33.8 bits (78), Expect = 0.089
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 96 GVGKTSCAASLAVKFANHGHPTIVISTD 123
G GK++ AA+LAV +A G+ T+++ D
Sbjct: 93 GAGKSTIAANLAVAYAQAGYKTLIVDGD 120
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 33.2 bits (76), Expect = 0.11
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 68 STPRETVAGFDEMVAGTQRKHYMLG--GKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
T G E + Q ++ G G GK++ + LA + G P V+ D
Sbjct: 2 MTLAALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur,
metal-binding, molybdenum, oxidoreductase; HET: HCA CFN
CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii}
SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E*
1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A
1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A*
1rw4_A
Length = 289
Score = 33.1 bits (76), Expect = 0.12
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDS 131
GKGG+GK++ +L A G +++ DP DS
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA---DS 44
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
3ez6_A* 3ez7_A
Length = 398
Score = 32.8 bits (75), Expect = 0.17
Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 94 KGGVGKTSCAASLAVKFANHGHPTI------VISTDPAHSLSDSFAQDLSGGTLVPVEGV 147
KGGV KT SLA H H + VI DP S + + S G +
Sbjct: 117 KGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKHSIG--IVNATS 174
Query: 148 DSPLFALEINPEKARE 163
+ E E
Sbjct: 175 AQAMLQNVSREELLEE 190
>3end_A Light-independent protochlorophyllide reductase iron-sulfur
ATP-binding protein; BCHL, electron donor, DPOR, Fe
protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter
sphaeroides 2} PDB: 3fwy_A*
Length = 307
Score = 32.5 bits (74), Expect = 0.20
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDS 131
GKGG+GK++ +++L+ F+ G + I DP H DS
Sbjct: 48 GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH---DS 83
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 32.7 bits (75), Expect = 0.20
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 96 GVGKTSCAASLAVKFANHGHPTIVISTD 123
+G T A+LA + ++I D
Sbjct: 103 SIGMTFVCANLAAVISQTNKRVLLIDCD 130
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 32.8 bits (75), Expect = 0.20
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 94 KGGVGKT----SCAASLAV--KFANHGHPTIVISTDPAHSLS 129
KGGV KT + A +L V H +VI DP S +
Sbjct: 120 KGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASST 161
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 32.3 bits (74), Expect = 0.23
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 96 GVGKTSCAASLAVKFANHGHPTIVISTD 123
GKT +++LA A + I D
Sbjct: 115 DSGKTFVSSTLAAVIAQSDQKVLFIDAD 142
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 32.3 bits (73), Expect = 0.26
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
Query: 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGV 147
++ + K G GK+ A L ++ G I+I DP + + L GG + G
Sbjct: 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIII--DPEREYKE-MCRKL-GGVWINCTGG 92
Query: 148 DSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGL 188
+ + L++ EE + ++ L L
Sbjct: 93 EGKINPLQVRLRPVEEEDEENAVFQSPLALHIQTLRTFFSL 133
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 32.0 bits (73), Expect = 0.29
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 74 VAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
+ G DE++ G +R +L G G GKT + G P I ++ +
Sbjct: 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 31.9 bits (73), Expect = 0.31
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 74 VAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
+ FD+++ G Q L G+ G GKT + K G P I ++T+
Sbjct: 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 31.0 bits (69), Expect = 0.47
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125
+LGG G +GK LA++ A GH +V S
Sbjct: 5 LLGGTGNLGKG-----LALRLATLGHEIVVGSRREE 35
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 31.4 bits (71), Expect = 0.51
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 74 VAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
V DEM G + + G G GKT + + I+ + +
Sbjct: 267 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 31.0 bits (70), Expect = 0.56
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 74 VAGFDEMVAG--TQRKHYMLGGKGGVGKTSCAASLAVKFA-NHGHPTIVISTD 123
+ GFDE++ G + +L G G GKT+ AA K A +G P + ++ +
Sbjct: 16 IPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid,
borellia burgdorferi, plasmid partition protein, iodide;
2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Length = 267
Score = 30.7 bits (70), Expect = 0.69
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 9/35 (25%)
Query: 94 KGGVGK-TSC---AASLAVKFANHGHPTIVISTDP 124
KGGVGK TS A L+ + ++I D
Sbjct: 36 KGGVGKSTSAIILATLLS-----KNNKVLLIDMDT 65
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 30.7 bits (70), Expect = 0.74
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 54 YRIPLKSPFQVRSISTPRETVAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLA 107
YR P + + E + V H + G G GKT+ A +LA
Sbjct: 11 YR-----PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALA 59
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 30.4 bits (69), Expect = 0.76
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 78 DEMVAGTQRKHYMLG--GKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
++A +LG G GKT+ A L+ G V D
Sbjct: 12 KTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59
>3dp9_A MTA/SAH nucleosidase; vibrio cholerae
5'-methylthioadenosine/S-adenosyl homocystei
nucleosidase, butylthio dadme immucillin A, MTAN,
hydrolase; HET: BIG; 2.30A {Vibrio cholerae}
Length = 231
Score = 30.5 bits (69), Expect = 0.87
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 64 VRSISTPRETVAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
I +E +G + ++ + G+GK S AA + P +VI+T
Sbjct: 17 KDLIEDVQEVNQAGCTFYSGQIQGVDVVLLQSGIGKVS-AALGTALLISQYAPDVVINTG 75
Query: 124 PAHSLSDSFAQDLSGGTLVPVEGV 147
A L+ G +V V
Sbjct: 76 SAGGFDA----SLNVGDVVISSEV 95
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 30.0 bits (68), Expect = 1.2
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 54 YRIPLKSPFQVRSISTPRETVAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLA 107
YR P + + E + V H + G G GKT+ A +LA
Sbjct: 11 YR-----PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALA 59
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 30.2 bits (68), Expect = 1.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 96 GVGKTSCAASLAVKFANHGHPTIVISTD 123
GVGK++ + +LA + + IV+ +D
Sbjct: 14 GVGKSTFSKNLAKILSKNNIDVIVLGSD 41
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 29.7 bits (66), Expect = 1.5
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLS 129
G G VG+T +A A+ GH + + DP +L+
Sbjct: 26 GTGTVGRT-----MAGALADLGHEVTIGTRDPKATLA 57
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 29.6 bits (67), Expect = 1.7
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 54 YRIPLKSPFQVRSISTPRETVAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLA 107
YR P ++ I V V H + G GVGKT+ A +LA
Sbjct: 19 YR-----PQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALA 67
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 29.7 bits (67), Expect = 1.8
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 54 YRIPLKSPFQVRSISTPRETVAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLA 107
YR P + I +ET+ ++ H ++ G G+GKT+ LA
Sbjct: 15 YR-----PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLA 63
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 29.2 bits (65), Expect = 2.1
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 86 RKHYMLG--GKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDS 131
+KH ++ G G G ++ + F G + I D H + +
Sbjct: 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRA 50
>3o4v_A MTA/SAH nucleosidase; mixed alpha/beta dimer, hydrolase; HET: 4CT;
1.75A {Escherichia coli} PDB: 1jys_A* 1nc1_A* 1nc3_A*
1y6q_A* 1y6r_A* 1z5p_A* 3df9_A* 1z5n_A* 1z5o_A*
Length = 234
Score = 29.0 bits (65), Expect = 2.5
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 64 VRSISTPRETVAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
I + G E+ G + K G+GK + AA A H P ++I+T
Sbjct: 19 RDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVA-AALGATLLLEHCKPDVIINTG 77
Query: 124 PAHSLSDSFAQDLSGGTLVPVEGV 147
A L+ L G +V +
Sbjct: 78 SAGGLAP----TLKVGDIVVSDEA 97
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.9 bits (64), Expect = 2.5
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEG 146
+H L G GVGKT+ + + G P T+ G +V + G
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQ-----GGRRIGFDVVTLSG 56
Query: 147 VDSPLFALEINPEKAREEFR 166
PL + + P + E R
Sbjct: 57 TRGPLSRVGLEPPPGKRECR 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 29.3 bits (66), Expect = 2.6
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 54 YRIPLKSPFQVRSISTPRETVAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLA 107
YR P + + E + + V + H + G G GKTS +LA
Sbjct: 19 YR-----PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALA 67
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.7
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 18/44 (40%)
Query: 179 MKDLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQ 222
+K L S L + AD D+ P A+AI M+
Sbjct: 22 LKKLQAS--LKLYAD-----------DSAP-----ALAIKATME 47
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 28.5 bits (63), Expect = 3.8
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 91 LGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125
+ G G GK+ L +K G+ + S +P
Sbjct: 24 IFGTGDFGKS-----LGLKMLQCGYSVVFGSRNPQ 53
>3eei_A 5-methylthioadenosine nucleosidase/S- adenosylhomocysteine
nucleosidase; MTAN; HET: MTM; 1.78A {Neisseria
meningitidis serogroup B}
Length = 233
Score = 28.1 bits (63), Expect = 4.2
Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 5/84 (5%)
Query: 64 VRSISTPRETVAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
+ + G G M+ G+GK + AA VI+T
Sbjct: 20 REMMENVKAVSFGRFSAYEGELAGKRMVLALSGIGKVN-AAVATAWIIREFAADCVINTG 78
Query: 124 PAHSLSDSFAQDLSGGTLVPVEGV 147
A L L G +V
Sbjct: 79 SAGGLGK----GLKVGDVVIGTET 98
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 28.1 bits (62), Expect = 4.4
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 80 MVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
M +L G G GK++ A +LA G P + +D
Sbjct: 3 MTDDLGGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSD 43
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 28.3 bits (63), Expect = 4.7
Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 31 SKSQNYTSLCRIARSFEFVSAPLYRIPLKSPFQVRSISTPRETVAGFDEMVAGTQRKHYM 90
+ L + +S+ L I + + ++ + S + V + ++K
Sbjct: 103 AAISERIQLVSLPKSYR--HIHLSDIDVNNASRMEAFSAILDFVEQYPSA----EQKGLY 156
Query: 91 LGGKGGVGKTSCAASLAVKFA-NHGHPTIVIST 122
L G G+GK+ A++A + + G T ++
Sbjct: 157 LYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 28.3 bits (63), Expect = 4.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 83 GTQRKHYMLGGKGGVGKTSCAASLA 107
+ ML G G+GKT+ A +A
Sbjct: 74 SGVFRAAMLYGPPGIGKTTAAHLVA 98
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND
biology, protein structure initiative, midwest center
for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter
pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A*
3qy0_A* 2qmo_A
Length = 242
Score = 27.9 bits (62), Expect = 5.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 96 GVGKTSCAASLAVKFANHGHPTIVI 120
GKT+CA LA G TI++
Sbjct: 32 NAGKTTCARLLAQYCNACGVKTILL 56
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 27.5 bits (62), Expect = 5.2
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVIS 121
G GVGK++ A +
Sbjct: 9 GAPGVGKSALARIFGGVEDGPEAEAAGHT 37
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase;
0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A*
1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A*
1dak_A* 1dam_A* 1dbs_A 1dts_A
Length = 224
Score = 27.8 bits (62), Expect = 5.4
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 96 GVGKTSCAASLAVKFANHGHPTIVI 120
VGKT + +L G+ T
Sbjct: 12 EVGKTVASCALLQAAKAAGYRTAGY 36
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A
{Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB:
1j8y_F
Length = 297
Score = 27.9 bits (63), Expect = 6.1
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD---PA 125
ML G G GKT+ A LA + G ++ D PA
Sbjct: 102 MLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPA 140
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 28.1 bits (63), Expect = 6.3
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 54 YRIPLKSPFQVRSISTPRETVAGFDEMVAGTQRKHYML-GGKGGVGKTSCAASLA 107
YR P + P F + + + H +L G GKT+ A +L
Sbjct: 20 YR-----PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALC 69
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural
genomics of infec diseases, csgid, ligase; 1.52A
{Francisella tularensis subsp}
Length = 228
Score = 27.7 bits (62), Expect = 6.4
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 96 GVGKTSCAASLAVKFANHGHPTIVI 120
VGKT + L + ++ +
Sbjct: 15 EVGKTYISTKLIEVCEHQNIKSLCL 39
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 28.1 bits (63), Expect = 6.4
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 56 IPLKSPFQVRSISTPRETVAGFDEMV-----AGTQRKHYMLGGKGGVGKTSCAASLAVKF 110
I + ++ + V G + V A Q++H +L G+ G GK+ ++A
Sbjct: 25 IEFTTTEEIEVPEKLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84
Query: 111 ANHGHPTIVISTDPAHS 127
I++ +P
Sbjct: 85 PTETLEDILVFPNPEDE 101
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 27.9 bits (63), Expect = 7.3
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 255 LDASIGKMMKLKKKLAS---TTSAFKSVFGKEKKQQDVASDKVEQLRERMAK 303
L + + ++KLAS A K V E+ + ++ E++RE +++
Sbjct: 809 LKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQ 860
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A
{Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A
2c08_A
Length = 256
Score = 27.5 bits (60), Expect = 7.5
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 248 LLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDL 307
+ L + D + ++ KKL F K+K+Q + +++ Q E+ + +++
Sbjct: 140 IDPLQNLHDKDLREIQHHLKKLEGRRLDFGY---KKKRQGKIPDEELRQALEKFDESKEI 196
Query: 308 FR 309
Sbjct: 197 AE 198
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 27.8 bits (61), Expect = 7.5
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 86 RKHYMLGGKGGVGKTSCAASLAVKFAN 112
L GG GK+ A LA + A
Sbjct: 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 27.2 bits (61), Expect = 7.6
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 12/41 (29%)
Query: 84 TQRKHYMLGGKGGVGKTSCAASLAVKFANHGH------PTI 118
T+ K ++G GGVGK+ +L ++ H PTI
Sbjct: 20 TEYKLVVVGA-GGVGKS----ALTIQLI-QNHFVDEYDPTI 54
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 27.8 bits (62), Expect = 7.7
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 262 MMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVR-----DLFRDPDATEF 316
+++L+K + + +++ +K A + + L+E + K+ +L R A E
Sbjct: 518 LVRLQKIMDEYAAGIATIYKTNEKMLQRALELLAFLKEDLEKLAARDLHELMR---AWEL 574
Query: 317 VIVTIPTVMAISESSRLHASLRKE 340
V + +E+ H RKE
Sbjct: 575 V-----HRVWTAEAHVRHMLFRKE 593
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 27.2 bits (60), Expect = 8.5
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDPA 125
G G ++ LA + G +V S +P
Sbjct: 35 GSGDFARS-----LATRLVGSGFKVVVGSRNPK 62
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni
subsp}
Length = 334
Score = 27.6 bits (62), Expect = 8.6
Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 23/161 (14%)
Query: 13 CISGASSRKTSMAMLALFSKSQNYTSLCRIA-RSFEFVSAPLYRIPLKSPFQVRSIST-P 70
+S KT + F S ++ L I F + + +PF V +++ P
Sbjct: 163 ILSARGVVKTHSLNVDAF-SSPDFGDLGYIVDGKVFFYNNVIKAHTKNAPFDVSKLTSLP 221
Query: 71 R-ETVAGFDEMVAGTQRKHYMLGG-KG------GVGKTSCAASLAVKFANHGHPTIVIST 122
+ + + + +G K G KG G G +K +V+S+
Sbjct: 222 KVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKDVLKELLKKGLKVVVSS 281
Query: 123 DPAHSLSDSFAQDLSGGTLVPVEGVDSP-LFALEINPEKAR 162
+ ++G V + A ++NP+KAR
Sbjct: 282 -----------RVVAGCVAVSDSDEKLGFISAEDLNPQKAR 311
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A
1ffh_A 2ng1_A*
Length = 295
Score = 27.5 bits (62), Expect = 8.8
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD---PA 125
L G G GKT+ AA LA+ + G ++++ D PA
Sbjct: 102 FLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 140
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND
ligase, magnesium, nucleotide-binding; 1.85A
{Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A*
3fpa_A*
Length = 251
Score = 27.4 bits (61), Expect = 8.9
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 96 GVGKTSCAASLAVKFANHGHPTIVI 120
GVGKT A+LA G V
Sbjct: 37 GVGKTVVCAALASAARQAGIDVAVC 61
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding,
signal recognition particle, GTP-binding, RNA-binding;
2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Length = 432
Score = 27.5 bits (62), Expect = 9.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD---PA 125
+L G G GKT+ AA LA G +I+ D PA
Sbjct: 103 LLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.375
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,177,535
Number of extensions: 376101
Number of successful extensions: 1165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1107
Number of HSP's successfully gapped: 113
Length of query: 413
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 317
Effective length of database: 4,021,377
Effective search space: 1274776509
Effective search space used: 1274776509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)