RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 043873
(413 letters)
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 159 bits (403), Expect = 2e-46
Identities = 84/319 (26%), Positives = 132/319 (41%), Gaps = 40/319 (12%)
Query: 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDS 149
GKGGVGKTS + + A++ A G +++STDPA ++ F+Q + G +
Sbjct: 12 FFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTI--GNTIQAIASVP 69
Query: 150 PLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGELKLGELLDTPPP 209
L ALEI+P+ A +++R D +K ++ + + +L T
Sbjct: 70 GLSALEIDPQAAAQQYRARIV------DPIKGVLPDDVVSSI-----NEQLSGACTTEIA 118
Query: 210 GLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKL 269
DE + + F I+FDTAPTGHT+RLL LP + I + L
Sbjct: 119 AFDEFTGLLTDASLLT-----RFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCL 173
Query: 270 ASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVIVTIPTVMAISE 329
+E+ RE+ A + DP T V+V + E
Sbjct: 174 GP-------------------MAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQE 214
Query: 330 SSRLHASLRKECIPVQRLIVNQVLPPS-ASDCKFCAMKRKDQMRVLETIMSDPQLANLRL 388
+R H L + Q L++N VLP + A++ A + + L + +D LA L
Sbjct: 215 VARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPAD--LAGLPT 272
Query: 389 VQAPLVDVEIRGVPALKFM 407
L V + GV AL +
Sbjct: 273 DTLFLQPVNMVGVSALSRL 291
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 141 bits (356), Expect = 7e-40
Identities = 73/331 (22%), Positives = 122/331 (36%), Gaps = 67/331 (20%)
Query: 79 EMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSG 138
+ +A + ML GKGGVGKT+ AA++AV+ A+ G + ++DPA LS +
Sbjct: 13 DDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGS--- 69
Query: 139 GTLVPVEGVDSPLFALEINPEKAREEFRTASQGSGGSGDGMKDLMDSMGLGMLADQLGEL 198
+ L I+P + E +R + G +D G +L +
Sbjct: 70 ---------LNNLQVSRIDPHEETERYRQHVLETKGKE------LDEAGKRLLEE----- 109
Query: 199 KLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTAPTGHTLRLLSLPDFLDAS 258
D P +E + + V DTAPTGHTL LL
Sbjct: 110 ------DLRSPCTEEIAVFQAFSRVIREAGKRFV---VMDTAPTGHTLLLLDATGAYHRE 160
Query: 259 IGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVI 318
I K M K L +DP+ T+ ++
Sbjct: 161 IAKKMGEK--------------------------------GHFTTPMMLLQDPERTKVLL 188
Query: 319 VTIPTVMAISESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIM 378
VT+P + E++ L A L + I I+N L + + M+ + ++ +E++
Sbjct: 189 VTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESV- 247
Query: 379 SDPQLANLRLVQAPLVDVEIRGVPALKFMGD 409
+ R+ P++ E G+ LK +
Sbjct: 248 --KRQHASRVALVPVLASEPTGIDKLKQLAG 276
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 48.0 bits (113), Expect = 8e-07
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 1/108 (0%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEGVDSPLF 152
GKGG+GK++ +L A G +++ DP + + T++ + +
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVE 68
Query: 153 ALEINPEKAREEFRTASQGSGGSGDG-MKDLMDSMGLGMLADQLGELK 199
LE+ SGG G + ++ G +
Sbjct: 69 DLELEDVLKAGYGGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYE 116
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 47.5 bits (111), Expect = 1e-06
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 92 GGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSF 132
GKGG GKT+ A+L V A GH ++ D + +
Sbjct: 8 SGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELI 48
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 46.2 bits (108), Expect = 2e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 91 LGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124
+ GKGG GKT+ A+L+V + G + + D
Sbjct: 8 VSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 46.1 bits (108), Expect = 3e-06
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSD 130
GKGG+GK++ +L G +V+ DP +
Sbjct: 8 GKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTR 45
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 35.4 bits (80), Expect = 0.006
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDP 124
+H L G GVGKT+ + + G P T+
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEE 39
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 35.5 bits (81), Expect = 0.007
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPV----E 145
++ G GVGKT+ A L + N G + + D + + + +PV E
Sbjct: 10 LVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPE 69
Query: 146 GVDSPLFALEINPEKAREEF 165
G D A + +
Sbjct: 70 GTDPAALAYDAVQAMKARGY 89
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 34.7 bits (79), Expect = 0.011
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 85 QRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLS 129
R + L G G GKT+ AA LA+ + G ++++ D +
Sbjct: 9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA 53
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 33.1 bits (74), Expect = 0.039
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 87 KHYMLGGKG-GVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSD 130
K Y + G VGKT + +L G+ T + S
Sbjct: 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKT 46
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 32.6 bits (73), Expect = 0.055
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
++ G GKT + L G PT +
Sbjct: 6 VMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 39
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 31.5 bits (70), Expect = 0.17
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 58 LKSPFQVRSISTPRETVAGFDEMVAGTQRKH-YMLGGKGGVGKTSCAASLAVKFANHGHP 116
L S V + + G ++ G + M+ G+GK++ A+++
Sbjct: 9 LSSEESVGLLFSG---CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK 65
Query: 117 TIVIST 122
+ ++
Sbjct: 66 KVGLAM 71
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 30.9 bits (69), Expect = 0.17
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127
ML G G GK + A LA + G ++ D
Sbjct: 16 MLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRP 53
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 30.8 bits (69), Expect = 0.19
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126
++ G GVGKT+ LA +F G ++ + D
Sbjct: 13 LMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 49
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 31.4 bits (70), Expect = 0.20
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 80 MVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQD 135
M + +H ++ G G GK+ LA G +++ DP + F +D
Sbjct: 44 MPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIV--DPNGDMLSKFGRD 97
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 30.7 bits (68), Expect = 0.21
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
++ G GVG T+ + G ++S
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 38
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 31.1 bits (70), Expect = 0.24
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 86 RKHYMLG--GKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDS 131
+KH ++ G G G ++ + F G + I D H + +
Sbjct: 2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRA 49
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 30.5 bits (68), Expect = 0.29
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 90 MLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHS 127
M+ G G GKT+ LA F + G ++ + D +
Sbjct: 15 MVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA 52
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 30.0 bits (66), Expect = 0.42
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
K ++ G GVGK++ A + N G +I+
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38
>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi
[TaxId: 669]}
Length = 114
Score = 28.9 bits (64), Expect = 0.49
Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 22/130 (16%)
Query: 181 DLMDSMGLGMLADQLGELKLGELLDTPPPGLDEAIAISKVMQFVESQQYNMFTRIVFDTA 240
D+++ + L+ ++G + LLD +D I + + S+Q I
Sbjct: 4 DVLNQQKIEELSAEIGSDNVPVLLDIFLGEMDSYIG--TLTELQGSEQLLYLKEIS---- 57
Query: 241 PTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRER 300
H L+ + AS G +L ++ + K+ Q + ++
Sbjct: 58 ---HALKSSA------ASFG-ADRLCERAIAIDKKAKA------NQLQEQGMETSEMLAL 101
Query: 301 MAKVRDLFRD 310
+ RD +R
Sbjct: 102 LHITRDAYRS 111
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 29.4 bits (65), Expect = 0.78
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 91 LGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFA 133
+ G G GK++ + + G VI+ DP+ ++
Sbjct: 59 VTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSI 101
>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 116
Score = 28.1 bits (62), Expect = 0.80
Identities = 13/63 (20%), Positives = 28/63 (44%)
Query: 328 SESSRLHASLRKECIPVQRLIVNQVLPPSASDCKFCAMKRKDQMRVLETIMSDPQLANLR 387
+E +L+ SL+K+ + I + + D F +R ++ ++ P+L N
Sbjct: 43 AEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHP 102
Query: 388 LVQ 390
V+
Sbjct: 103 DVR 105
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 29.0 bits (63), Expect = 1.0
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 63 QVRSISTPRETVAGFDEMVAGTQRKH--YMLGGKGGVGKTSCAASLAVKFANHGH 115
++ I+T D+++ G + G+ GKT +LAV
Sbjct: 1 EIIQITT---GSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPID 52
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 29.0 bits (63), Expect = 1.1
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 88 HYMLGGKGGVGKTSCAASLAVKFANHGHPT 117
Y G+ G+GKT+ A + +
Sbjct: 48 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKE 77
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 28.3 bits (62), Expect = 1.2
Identities = 5/38 (13%), Positives = 7/38 (18%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSD 130
G GKT+ G +
Sbjct: 8 GYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPA 45
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 28.5 bits (62), Expect = 1.3
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 5/61 (8%)
Query: 63 QVRSISTPRETVAGFDEMVAGTQRKH--YMLGGKGGVGKTSCAASLAVKFANHGHPTIVI 120
V +ST + + D ++ G G G GKT V N
Sbjct: 12 TVWKLST---SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDE 68
Query: 121 S 121
Sbjct: 69 E 69
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.5 bits (62), Expect = 1.3
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 78 DEMVAGTQRKH-YMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSF 132
D ++ L GG GK+ A LA + A V +
Sbjct: 20 DYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPA 75
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 27.7 bits (60), Expect = 1.9
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 96 GVGKTSCAASLAVKFANHGHPTIVI 120
G GK + L+ F G +
Sbjct: 10 GAGKRTLVEKLSGAFRAAGRSVATL 34
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 28.0 bits (62), Expect = 2.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 96 GVGKTSCAASLAVKFANHGHPTIVI 120
G+GKT+ A FA + ++I
Sbjct: 15 GIGKTTAAEEFLHHFAITPNRILLI 39
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 27.3 bits (59), Expect = 2.3
Identities = 7/34 (20%), Positives = 9/34 (26%)
Query: 93 GKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126
G GKT+ L G +I
Sbjct: 9 AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 42
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide
synthetase MurE {Escherichia coli [TaxId: 562]}
Length = 234
Score = 27.8 bits (60), Expect = 2.3
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 95 GGVGKTSCAASLAVKFANHGHPTIVIST 122
G GKT+ LA G + V+ T
Sbjct: 12 GTNGKTTTTQLLAQWSQLLGEISAVMGT 39
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.7 bits (60), Expect = 2.5
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 74 VAGFDEMVAGTQRKH--YMLGGKGGVGKTSCAASLAVKFANHGHPTIVIST 122
+ GFD++ G ++ G G GKT + V T
Sbjct: 12 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 62
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 27.2 bits (59), Expect = 2.9
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 96 GVGKTSCAASLAVKFANHGHPTIVISTDP 124
G GKT+ + G +V + +P
Sbjct: 12 GAGKTTARNVVVETLEQLGIRDMVFTREP 40
>d1vqsa_ d.58.4.13 (A:) Hypothetical protein Atu4242 {Agrobacterium
tumefaciens [TaxId: 358]}
Length = 110
Score = 26.4 bits (58), Expect = 3.3
Identities = 13/115 (11%), Positives = 37/115 (32%), Gaps = 25/115 (21%)
Query: 227 QQYNMF--TRIVFDTAPTGHTLRLLSLPDFLDASIGKMMKLKKKLASTTSAFKSVFGKEK 284
++MF R + L+ ++P +L + ++++K +
Sbjct: 3 HHHHMFYEIRT--------YRLKNGAIPAYLKVVEDEGIEIQKSHLGELVGYFFS----- 49
Query: 285 KQQDVASDKV------EQLRERMAKVRDLFRDPDATEFVIVTIPTVMAISESSRL 333
+ +++ L +R + L DP F+ + +++
Sbjct: 50 --EIGPINEIVHIWAFSSLDDRAERRARLMADPRWLSFLPKIRD--LIEVAENKI 100
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 27.2 bits (59), Expect = 3.3
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 96 GVGKTSCAASLAVKFANHGHPTIVIS 121
GK++ + L GH ++
Sbjct: 13 RAGKSTQSRKLVEALCAAGHRAELLR 38
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 27.2 bits (59), Expect = 3.5
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 91 LGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSF 132
+ G GVGK++ +L GH V++ DP+ + +
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGS 97
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 27.0 bits (59), Expect = 3.7
Identities = 15/89 (16%), Positives = 29/89 (32%)
Query: 62 FQVRSISTPRETVAGFDEMVAGTQRKHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVIS 121
T + +++ Q K + G+ GVGK+S +++ + +
Sbjct: 73 IGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHL 132
Query: 122 TDPAHSLSDSFAQDLSGGTLVPVEGVDSP 150
H+ SGG + G S
Sbjct: 133 GRGKHTTRHVELIHTSGGLVADTPGFSSL 161
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.1 bits (56), Expect = 6.7
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
+L G G GK++ A +LA G P + +D
Sbjct: 5 NILLLSGHPGSGKSTIAEALA---NLPGVPKVHFHSD 38
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 26.1 bits (56), Expect = 7.0
Identities = 18/80 (22%), Positives = 35/80 (43%)
Query: 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAHSLSDSFAQDLSGGTLVPVEG 146
+H +L G G+GKT+ A +A + + T + + L+ A L G ++ ++
Sbjct: 36 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDE 95
Query: 147 VDSPLFALEINPEKAREEFR 166
+ E + A E+F
Sbjct: 96 IHRLSRQAEEHLYPAMEDFV 115
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 25.9 bits (55), Expect = 7.3
Identities = 9/36 (25%), Positives = 12/36 (33%)
Query: 91 LGGKGGVGKTSCAASLAVKFANHGHPTIVISTDPAH 126
+ G GKT+ A L+ G V D
Sbjct: 27 IDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 26.2 bits (57), Expect = 7.6
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 85 QRKHYMLGGKGGVGKTSCAASLA 107
++++++ G GKT+ AA+L
Sbjct: 153 KKRYWLFKGPIDSGKTTLAAALL 175
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 26.1 bits (56), Expect = 8.7
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 87 KHYMLGGKGGVGKTSCAASLAVKFANHGHPTIVISTD 123
++LGG+ G GKTS +++ + + IVI D
Sbjct: 33 TAFLLGGQPGSGKTSLRSAIFEETQGNV---IVIDND 66
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA
{Salmonella typhimurium [TaxId: 90371]}
Length = 157
Score = 25.6 bits (56), Expect = 8.9
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 96 GVGKTSCAASLAVKFANHGHPTIVI 120
G GKT+ A A + HG V+
Sbjct: 12 GKGKTTAAFGTAARAVGHGKNVGVV 36
>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal
domain {Trypanosoma brucei [TaxId: 5691]}
Length = 405
Score = 26.1 bits (56), Expect = 9.7
Identities = 5/55 (9%), Positives = 18/55 (32%)
Query: 264 KLKKKLASTTSAFKSVFGKEKKQQDVASDKVEQLRERMAKVRDLFRDPDATEFVI 318
+ + + + ++ + L + ++ + +RD EF +
Sbjct: 299 LSLRWAKAHGVGEEERRKRYPSMEEAMPENYRLLCDVRKRLENHYRDMQDLEFTV 353
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.375
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,443,104
Number of extensions: 65535
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 52
Length of query: 413
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,199,356
Effective search space: 389790700
Effective search space used: 389790700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)