BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043874
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/310 (60%), Positives = 233/310 (75%), Gaps = 9/310 (2%)
Query: 4 IGVCYGMLGNNLPSKRDVIAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGLPNDDLQ 63
+GVCYGM GNNLP +VIA+Y ++NI RMR+YDPN LEALRGSNIE++LG+PN DLQ
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 64 RIASNQAEANSWVQNNVRNFANNVKFKYIAVGNEAKPGDN----FAQYLVPAMRNIQNAI 119
+ +N + A SWVQ NVR F ++V+F+YIAVGNE P + AQ+++PAMRNI +AI
Sbjct: 62 SL-TNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAI 120
Query: 120 NEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPY 179
AGL +QIKVSTAI+ +G S+PPS G+F+ D R L+P+IRFL+ RSPLL N+YPY
Sbjct: 121 RSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPY 180
Query: 180 FAIADN-RQISLDYALFGSQQTVVSDGSLSYLSLFDAMLDAVYAALEKTGGGSLDIVISE 238
F A N R ISL YALF S VV DG Y +LFDA LDA+Y+ALE+ GGSL++V+SE
Sbjct: 181 FTYAGNPRDISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEVVVSE 240
Query: 239 SGWPTAGGDGALANVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPETE 298
SGWP+AG A DN RTY +NLIQHVKRG+PKRP R IETY+FAMFDEN K PE E
Sbjct: 241 SGWPSAGAFA--ATFDNGRTYLSNLIQHVKRGTPKRPKRAIETYLFAMFDENKKQ-PEVE 297
Query: 299 RHWGLFAPNR 308
+H+GLF PN+
Sbjct: 298 KHFGLFFPNK 307
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 343 bits (881), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 175/306 (57%), Positives = 229/306 (74%), Gaps = 3/306 (0%)
Query: 4 IGVCYGMLGNNLPSKRDVIAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGLPNDDLQ 63
IGVCYGMLGNNLP +V+++Y NNI RMRLYDPN AL+ALR SNI+V+L +P D+Q
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 64 RIASNQAEANSWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINEAG 123
+ASN + A W++ NV + +V F+YIAVGNE PG + AQY++PAMRNI NA++ AG
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNALSSAG 120
Query: 124 LGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYFAIA 183
L NQIKVSTA++TG LG S+PPS G+F + L P+++FL N +PLL N+YPYF+
Sbjct: 121 LQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSYT 180
Query: 184 DNR-QISLDYALFGSQQTVVSDGSLSYLSLFDAMLDAVYAALEKTGGGSLDIVISESGWP 242
N QISL YALF + VV DG SY +LFDA++DAV+AALE+ GG ++ +V+SESGWP
Sbjct: 181 GNPGQISLPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSESGWP 240
Query: 243 TAGGDGALANVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPETERHWG 302
+AGG GA A+ NA+TYN NLI+HV G+P+RPG+ IE YIF MF+EN K G E+++G
Sbjct: 241 SAGG-GAEASTSNAQTYNQNLIRHVGGGTPRRPGKEIEAYIFEMFNENQKAG-GIEQNFG 298
Query: 303 LFAPNR 308
LF PN+
Sbjct: 299 LFYPNK 304
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 315 bits (806), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 159/311 (51%), Positives = 218/311 (70%), Gaps = 13/311 (4%)
Query: 4 IGVCYGMLGNNLPSKRDVIAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGLPNDDLQ 63
IGVCYG + NNLPS +DVI +YN NNI++MR+Y P+ AL+GSNIE++L +PN DL+
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 64 RIASNQAEANSWVQNNVRNFANNVKFKYIAVGNEAKPGD---NFAQYLVPAMRNIQNAIN 120
+A N + AN WVQ+N+RN +VKFKYIAVGNE PG +A+++ PAM NI NA++
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 121 EAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYF 180
AGL NQIKVST+ +G L ++PP F+++Y+ ++P+I FL + PLL N+YPYF
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 181 AIADNRQ-ISLDYALFGSQQTVVSDGSLSYLSLFDAMLDAVYAALEKTGGGSLDIVISES 239
DN + L YALF Q+ Y +LFDA++D++Y A EK GG +++I++SES
Sbjct: 182 GHIDNTNAVPLSYALFNQQRR----NDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSES 237
Query: 240 GWPTAGGDGALANVDNARTYNNNLIQHVKR--GSPKRPGRPIETYIFAMFDENGKTGPET 297
GWP+ G A + NARTY NLI HVKR G+PK+PG+ IETY+FAMFDEN K G +
Sbjct: 238 GWPSEGHPA--ATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEAS 295
Query: 298 ERHWGLFAPNR 308
E+H+GLF P++
Sbjct: 296 EKHFGLFNPDQ 306
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 313 bits (801), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 158/311 (50%), Positives = 217/311 (69%), Gaps = 13/311 (4%)
Query: 4 IGVCYGMLGNNLPSKRDVIAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGLPNDDLQ 63
IGVCYG + NNLPS +DVI +YN NNI++MR+Y P+ AL+GSNIE++L +PN DL+
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 64 RIASNQAEANSWVQNNVRNFANNVKFKYIAVGNEAKPGD---NFAQYLVPAMRNIQNAIN 120
+A N + AN WVQ+N+RN +VKFKYIAVGNE PG +A+++ PAM NI NA++
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 121 EAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYF 180
AGL NQIKVST+ +G L ++PP F+++Y+ ++P+I FL + PLL N+YPYF
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 181 AIADNRQ-ISLDYALFGSQQTVVSDGSLSYLSLFDAMLDAVYAALEKTGGGSLDIVISES 239
DN + L YALF Q+ Y +LFDA++D++Y A EK GG +++I++S S
Sbjct: 182 GHIDNTNAVPLSYALFNQQRR----NDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSAS 237
Query: 240 GWPTAGGDGALANVDNARTYNNNLIQHVKR--GSPKRPGRPIETYIFAMFDENGKTGPET 297
GWP+ G A + NARTY NLI HVKR G+PK+PG+ IETY+FAMFDEN K G +
Sbjct: 238 GWPSEGHPA--ATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEAS 295
Query: 298 ERHWGLFAPNR 308
E+H+GLF P++
Sbjct: 296 EKHFGLFNPDQ 306
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 275 bits (702), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 159/307 (51%), Positives = 200/307 (65%), Gaps = 11/307 (3%)
Query: 4 IGVCYGMLGNNLPSKRDVIAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGLPNDDLQ 63
IGVCYG++GNNLPS+ DV+ +Y I MR+Y +G+AL ALR S I ++L + ND L
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 64 RIASNQAEANSWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINEAG 123
IA++ + A SWVQNNVR + V KYIA GNE + G Q ++PAMRN+ NA A
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGAT--QSILPAMRNL-NAALSAA 117
Query: 124 LGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYFAIA 183
IKVST+I + SFPPS G FK Y + + R L +PLL N+YPYFA
Sbjct: 118 GLGAIKVSTSIRFDEVANSFPPSAGVFKNAY---MTDVARLLASTGAPLLANVYPYFAYR 174
Query: 184 DN-RQISLDYALFGSQQTVV-SDGSLSYLSLFDAMLDAVYAALEKTGGGSLDIVISESGW 241
DN ISL+YA F TV + L+Y SLFDAM+DAVYAALEK G ++ +V+SESGW
Sbjct: 175 DNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGW 234
Query: 242 PTAGGDGALANVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPETERHW 301
P+AGG A A NARTYN LI HV G+PK+ +ETYIFAMF+EN KTG TER +
Sbjct: 235 PSAGGFAASAG--NARTYNQGLINHVGGGTPKKR-EALETYIFAMFNENQKTGDATERSF 291
Query: 302 GLFAPNR 308
GLF P++
Sbjct: 292 GLFNPDK 298
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 270 bits (690), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 145/305 (47%), Positives = 198/305 (64%), Gaps = 9/305 (2%)
Query: 4 IGVCYGMLGNNLPSKRDVIAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGLPNDDLQ 63
IGVCYGM NNLP+ V++++ N I+ MRLY PN AL+A+ G+ I V++G PND L
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 64 RIASNQAEANSWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINEAG 123
+A++ A A SWV++N++ + V F+Y+ VGNE G + LVPAM+N+ A+ AG
Sbjct: 61 NLAASPAAAASWVKSNIQAYP-KVSFRYVCVGNEVAGGAT--RNLVPAMKNVHGALVAAG 117
Query: 124 LGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYFAIA 183
LG IKV+T++ LG PPS GSF + + P+++FL +PL+ N+YPY A A
Sbjct: 118 LG-HIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAWA 176
Query: 184 DN-RQISLDYALFGSQQTVVSDGSLSYLSLFDAMLDAVYAALEKTGGGSLDIVISESGWP 242
N + + YALF + TVV DG+ Y +LFD +DA Y A+ K GG S+ +V+SESGWP
Sbjct: 177 YNPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWP 236
Query: 243 TAGGDGALANVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPETERHWG 302
+ GG A NAR YN +LI HV RG+P+ PG IETYIFAMF+EN K E++WG
Sbjct: 237 SGGGTAATP--ANARFYNQHLINHVGRGTPRHPGA-IETYIFAMFNENQKDS-GVEQNWG 292
Query: 303 LFAPN 307
LF PN
Sbjct: 293 LFYPN 297
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 205 GSLSYLSLFDAMLDAVYAALEKTG-----GGSLDIVIS---ESGWPTAGGDG-ALANVDN 255
S LS+ D ++ +Y L++ G + + +S +G AG +G + V
Sbjct: 216 SSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPM 275
Query: 256 ARTYNNNLIQHVKRGSPKRPG------RPIETYIFAMFDENGKTGPETERHWGLF 304
R YNN ++V +G KRPG P IF D TG E +R LF
Sbjct: 276 LRVYNNT-ARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLF 329
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 205 GSLSYLSLFDAMLDAVYAALEKTG-----GGSLDIVIS---ESGWPTAGGDG-ALANVDN 255
S LS+ D ++ +Y L++ G + + +S +G AG +G + V
Sbjct: 143 SSCFLLSMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPM 202
Query: 256 ARTYNNNLIQHVKRGSPKRPG------RPIETYIFAMFDENGKTGPETERHWGLF 304
R YNN ++V +G KRPG P IF D TG E +R LF
Sbjct: 203 LRVYNNT-ARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLF 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,733,889
Number of Sequences: 62578
Number of extensions: 417526
Number of successful extensions: 1027
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 991
Number of HSP's gapped (non-prelim): 9
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)