Query 043874
Match_columns 308
No_of_seqs 137 out of 1108
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 09:07:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 5E-83 1.1E-87 599.7 23.3 301 4-308 1-302 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 3.8E-51 8.2E-56 365.5 22.7 249 2-308 44-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.2 6.1E-09 1.3E-13 98.9 21.2 215 18-286 26-296 (332)
4 PF03198 Glyco_hydro_72: Gluca 99.0 1.1E-08 2.3E-13 95.6 15.4 190 4-245 30-252 (314)
5 COG3867 Arabinogalactan endo-1 98.4 5.8E-05 1.2E-09 70.0 19.0 213 18-285 65-341 (403)
6 PRK10150 beta-D-glucuronidase; 98.2 0.00056 1.2E-08 70.3 25.2 250 4-308 295-579 (604)
7 PF00150 Cellulase: Cellulase 98.0 0.00025 5.5E-09 64.7 15.4 110 17-126 22-166 (281)
8 smart00633 Glyco_10 Glycosyl h 97.3 0.045 9.7E-07 50.2 18.9 70 224-308 175-245 (254)
9 PF11790 Glyco_hydro_cc: Glyco 97.2 0.014 3E-07 53.2 14.6 144 87-286 64-212 (239)
10 PF02836 Glyco_hydro_2_C: Glyc 97.1 0.028 6E-07 52.6 15.7 92 4-98 18-132 (298)
11 TIGR03356 BGL beta-galactosida 96.9 0.21 4.5E-06 49.5 21.2 46 18-63 56-120 (427)
12 PF02449 Glyco_hydro_42: Beta- 87.0 5.7 0.00012 38.3 10.3 82 19-100 13-140 (374)
13 cd02875 GH18_chitobiase Chitob 85.7 6.2 0.00014 38.1 9.7 131 29-181 55-191 (358)
14 PF00232 Glyco_hydro_1: Glycos 82.8 0.28 6E-06 48.9 -1.0 272 18-307 60-430 (455)
15 PRK10340 ebgA cryptic beta-D-g 82.6 13 0.00029 41.0 11.6 94 4-100 337-452 (1021)
16 PF03662 Glyco_hydro_79n: Glyc 79.3 5.5 0.00012 38.0 6.4 175 41-246 113-300 (319)
17 PRK13511 6-phospho-beta-galact 78.4 6.4 0.00014 39.5 7.0 47 18-64 56-121 (469)
18 PLN02814 beta-glucosidase 76.1 6.5 0.00014 39.9 6.4 71 229-307 385-459 (504)
19 PLN02998 beta-glucosidase 75.1 3.6 7.9E-05 41.6 4.2 72 229-307 390-464 (497)
20 PRK09525 lacZ beta-D-galactosi 74.8 33 0.00072 38.0 11.8 94 4-100 353-465 (1027)
21 PLN02849 beta-glucosidase 72.4 9.6 0.00021 38.7 6.5 73 229-307 383-459 (503)
22 PF02055 Glyco_hydro_30: O-Gly 72.1 44 0.00094 33.9 11.1 58 76-133 210-279 (496)
23 smart00481 POLIIIAc DNA polyme 71.6 18 0.00038 25.6 6.1 45 15-59 14-63 (67)
24 COG4782 Uncharacterized protei 69.5 17 0.00037 35.3 7.1 58 209-269 125-186 (377)
25 PF00925 GTP_cyclohydro2: GTP 68.2 6.3 0.00014 33.9 3.6 36 22-57 132-167 (169)
26 cd02874 GH18_CFLE_spore_hydrol 67.7 16 0.00034 34.2 6.5 80 40-124 48-138 (313)
27 PF06180 CbiK: Cobalt chelatas 67.4 59 0.0013 30.1 10.1 141 14-183 56-209 (262)
28 PF14587 Glyco_hydr_30_2: O-Gl 64.5 1.5E+02 0.0032 29.1 13.1 91 41-136 108-228 (384)
29 PRK09593 arb 6-phospho-beta-gl 64.5 13 0.00029 37.4 5.6 70 232-307 369-446 (478)
30 PRK09589 celA 6-phospho-beta-g 64.0 12 0.00027 37.6 5.2 70 232-307 368-445 (476)
31 cd00598 GH18_chitinase-like Th 61.8 19 0.00042 31.1 5.6 79 42-124 54-142 (210)
32 TIGR01233 lacG 6-phospho-beta- 61.2 21 0.00046 35.8 6.4 47 18-64 55-120 (467)
33 PRK15014 6-phospho-beta-glucos 60.4 12 0.00027 37.6 4.5 70 232-307 369-446 (477)
34 PRK14334 (dimethylallyl)adenos 58.2 1.4E+02 0.003 29.6 11.5 57 104-179 270-326 (440)
35 PRK09852 cryptic 6-phospho-bet 57.4 19 0.00042 36.2 5.3 47 18-64 73-139 (474)
36 PF14488 DUF4434: Domain of un 57.2 75 0.0016 27.2 8.3 79 40-122 68-151 (166)
37 PF06117 DUF957: Enterobacteri 56.8 32 0.00069 24.8 4.8 43 68-122 9-55 (65)
38 PF02449 Glyco_hydro_42: Beta- 56.7 1.2E+02 0.0027 29.1 10.7 56 104-179 207-262 (374)
39 PRK00393 ribA GTP cyclohydrola 55.2 19 0.00042 31.8 4.4 33 22-54 134-166 (197)
40 TIGR00505 ribA GTP cyclohydrol 55.0 20 0.00043 31.5 4.4 33 22-54 131-163 (191)
41 PF12876 Cellulase-like: Sugar 52.1 33 0.00072 25.8 4.7 47 86-134 8-64 (88)
42 PF04909 Amidohydro_2: Amidohy 50.5 39 0.00084 30.0 5.7 53 109-176 84-137 (273)
43 PRK13347 coproporphyrinogen II 50.4 48 0.001 33.0 6.8 104 19-125 152-282 (453)
44 TIGR03632 bact_S11 30S ribosom 49.3 43 0.00094 26.6 5.1 37 19-55 50-91 (108)
45 COG3934 Endo-beta-mannanase [C 48.9 47 0.001 33.6 6.3 88 76-183 126-214 (587)
46 cd02876 GH18_SI-CLP Stabilin-1 48.2 2.1E+02 0.0046 26.7 10.6 126 41-181 55-191 (318)
47 PRK12485 bifunctional 3,4-dihy 47.6 23 0.00051 34.5 4.0 33 22-55 331-363 (369)
48 cd02872 GH18_chitolectin_chito 47.3 56 0.0012 31.2 6.6 62 104-182 132-193 (362)
49 PRK09936 hypothetical protein; 47.1 1.1E+02 0.0024 28.9 8.1 58 4-61 22-96 (296)
50 PF05990 DUF900: Alpha/beta hy 46.8 81 0.0018 28.4 7.2 41 225-268 43-87 (233)
51 PF13547 GTA_TIM: GTA TIM-barr 46.5 28 0.00061 32.7 4.1 85 87-185 18-115 (299)
52 cd00641 GTP_cyclohydro2 GTP cy 44.8 35 0.00075 29.9 4.3 33 22-54 133-165 (193)
53 PRK14336 (dimethylallyl)adenos 44.7 2.8E+02 0.0061 27.3 11.2 58 104-180 257-314 (418)
54 COG1433 Uncharacterized conser 44.3 81 0.0018 25.7 6.1 39 20-58 56-94 (121)
55 PRK14019 bifunctional 3,4-dihy 44.2 29 0.00062 33.8 4.0 35 22-57 328-362 (367)
56 PF14871 GHL6: Hypothetical gl 43.9 59 0.0013 26.8 5.3 44 17-60 1-67 (132)
57 TIGR01579 MiaB-like-C MiaB-lik 42.8 1.8E+02 0.0038 28.4 9.4 135 15-179 166-327 (414)
58 PRK14327 (dimethylallyl)adenos 42.1 3.9E+02 0.0084 27.2 11.9 135 15-179 240-401 (509)
59 KOG0078 GTP-binding protein SE 41.3 59 0.0013 29.1 5.2 63 31-99 61-128 (207)
60 PF00411 Ribosomal_S11: Riboso 41.0 56 0.0012 26.0 4.6 36 20-55 51-91 (110)
61 PF01229 Glyco_hydro_39: Glyco 40.8 3.9E+02 0.0084 26.8 17.0 175 92-308 159-347 (486)
62 TIGR03628 arch_S11P archaeal r 39.8 71 0.0015 25.8 5.0 37 19-55 53-102 (114)
63 PRK09318 bifunctional 3,4-dihy 39.6 42 0.00091 32.9 4.4 37 22-58 320-356 (387)
64 cd06545 GH18_3CO4_chitinase Th 38.6 61 0.0013 29.3 5.1 78 41-124 50-133 (253)
65 PRK09311 bifunctional 3,4-dihy 38.5 45 0.00097 32.9 4.4 33 22-54 339-371 (402)
66 PRK08815 GTP cyclohydrolase; P 38.4 45 0.00097 32.6 4.3 36 22-57 305-340 (375)
67 PF02579 Nitro_FeMo-Co: Dinitr 38.2 1.6E+02 0.0034 21.7 6.6 41 18-58 42-82 (94)
68 CHL00041 rps11 ribosomal prote 37.6 84 0.0018 25.4 5.2 35 20-54 64-103 (116)
69 smart00636 Glyco_18 Glycosyl h 37.3 1.1E+02 0.0024 28.6 6.8 121 43-181 57-188 (334)
70 PRK09319 bifunctional 3,4-dihy 37.2 47 0.001 34.1 4.4 36 22-57 343-378 (555)
71 PLN02831 Bifunctional GTP cycl 37.1 47 0.001 33.3 4.4 33 22-54 373-405 (450)
72 PRK09607 rps11p 30S ribosomal 35.1 99 0.0021 25.7 5.3 37 19-55 60-109 (132)
73 cd04723 HisA_HisF Phosphoribos 34.7 1.7E+02 0.0036 26.3 7.2 69 17-101 36-113 (233)
74 PRK05309 30S ribosomal protein 34.7 99 0.0021 25.4 5.2 35 20-54 68-107 (128)
75 TIGR03822 AblA_like_2 lysine-2 34.6 2.2E+02 0.0048 26.9 8.4 19 40-58 187-205 (321)
76 COG4213 XylF ABC-type xylose t 34.4 86 0.0019 30.0 5.3 76 40-134 175-251 (341)
77 cd04743 NPD_PKS 2-Nitropropane 34.1 3.7E+02 0.0081 25.7 9.7 56 3-59 57-112 (320)
78 PF13377 Peripla_BP_3: Peripla 33.7 2.5E+02 0.0053 22.5 7.9 111 23-155 2-124 (160)
79 PF00834 Ribul_P_3_epim: Ribul 33.2 3.4E+02 0.0074 23.9 10.0 98 17-130 68-171 (201)
80 cd06598 GH31_transferase_CtsZ 32.3 4.3E+02 0.0093 24.8 11.5 71 104-182 22-96 (317)
81 PRK14328 (dimethylallyl)adenos 32.3 4.8E+02 0.011 25.7 10.7 58 104-180 280-337 (439)
82 cd02873 GH18_IDGF The IDGF's ( 32.0 4.5E+02 0.0098 25.8 10.3 59 104-182 167-225 (413)
83 PF01055 Glyco_hydro_31: Glyco 32.0 2.7E+02 0.0058 27.3 8.8 131 104-286 41-178 (441)
84 PF02811 PHP: PHP domain; Int 31.9 1.3E+02 0.0027 24.7 5.7 45 15-59 15-64 (175)
85 cd01543 PBP1_XylR Ligand-bindi 30.9 3.7E+02 0.0079 23.6 10.3 99 19-136 98-209 (265)
86 KOG0626 Beta-glucosidase, lact 30.7 1.2E+02 0.0025 31.1 5.9 73 228-307 404-486 (524)
87 COG1509 KamA Lysine 2,3-aminom 29.0 3.7E+02 0.0081 26.2 8.7 94 16-124 172-281 (369)
88 cd07937 DRE_TIM_PC_TC_5S Pyruv 28.8 4.6E+02 0.01 24.1 9.4 36 22-57 97-138 (275)
89 PRK14339 (dimethylallyl)adenos 28.4 5.8E+02 0.013 25.0 11.8 57 104-179 263-319 (420)
90 TIGR03234 OH-pyruv-isom hydrox 28.2 1.3E+02 0.0029 26.8 5.5 51 4-55 3-57 (254)
91 COG0807 RibA GTP cyclohydrolas 27.9 95 0.0021 27.5 4.3 39 22-60 133-171 (193)
92 COG1058 CinA Predicted nucleot 27.7 1.8E+02 0.0039 26.9 6.2 59 88-173 3-65 (255)
93 PF00977 His_biosynth: Histidi 27.7 1.4E+02 0.0031 26.7 5.5 72 15-102 28-109 (229)
94 PRK14332 (dimethylallyl)adenos 27.3 6.3E+02 0.014 25.1 14.9 193 15-242 182-398 (449)
95 TIGR03820 lys_2_3_AblA lysine- 26.9 3.1E+02 0.0067 27.3 8.1 87 22-124 178-277 (417)
96 PF13549 ATP-grasp_5: ATP-gras 26.4 1E+02 0.0022 27.8 4.3 80 15-94 9-102 (222)
97 TIGR00640 acid_CoA_mut_C methy 25.6 2.5E+02 0.0054 23.0 6.2 11 104-114 115-125 (132)
98 PHA02754 hypothetical protein; 25.5 61 0.0013 23.0 2.1 28 106-133 14-42 (67)
99 PF00704 Glyco_hydro_18: Glyco 25.3 1.9E+02 0.0041 26.8 6.2 114 48-181 71-196 (343)
100 PRK07198 hypothetical protein; 25.3 64 0.0014 31.8 2.9 37 22-58 338-375 (418)
101 PHA01735 hypothetical protein 25.3 48 0.001 24.4 1.6 28 64-99 30-57 (76)
102 cd00854 NagA N-acetylglucosami 24.6 1.1E+02 0.0025 29.3 4.6 44 15-59 145-194 (374)
103 PRK09989 hypothetical protein; 24.3 1.8E+02 0.0038 26.2 5.6 51 4-55 4-58 (258)
104 COG5016 Pyruvate/oxaloacetate 24.3 90 0.002 31.0 3.7 40 18-57 96-145 (472)
105 PRK14337 (dimethylallyl)adenos 24.0 7.1E+02 0.015 24.6 11.1 72 89-179 259-338 (446)
106 PRK00448 polC DNA polymerase I 23.7 1.5E+02 0.0032 34.3 5.8 47 13-59 347-398 (1437)
107 TIGR01125 MiaB-like tRNA modif 23.7 6.8E+02 0.015 24.5 10.0 60 104-182 268-327 (430)
108 PRK12581 oxaloacetate decarbox 23.6 1.2E+02 0.0025 30.7 4.5 37 22-58 111-153 (468)
109 PRK05723 flavodoxin; Provision 23.4 4.4E+02 0.0095 22.0 10.2 115 3-124 2-117 (151)
110 PTZ00090 40S ribosomal protein 23.0 1.9E+02 0.0042 26.1 5.2 37 21-57 172-212 (233)
111 PF07799 DUF1643: Protein of u 23.0 67 0.0014 26.2 2.3 38 145-184 22-62 (136)
112 PRK07379 coproporphyrinogen II 22.8 4.3E+02 0.0093 25.8 8.3 21 105-125 226-246 (400)
113 PRK13587 1-(5-phosphoribosyl)- 22.5 3.3E+02 0.0071 24.5 6.9 70 16-101 31-111 (234)
114 PRK13586 1-(5-phosphoribosyl)- 22.5 3.6E+02 0.0077 24.3 7.1 70 16-101 30-108 (232)
115 PRK14326 (dimethylallyl)adenos 22.4 8.1E+02 0.018 24.7 11.8 56 5-60 210-277 (502)
116 PRK14114 1-(5-phosphoribosyl)- 22.4 3.9E+02 0.0085 24.2 7.4 70 16-101 30-108 (241)
117 COG0621 MiaB 2-methylthioadeni 22.0 5.9E+02 0.013 25.5 9.0 60 101-179 275-334 (437)
118 cd03412 CbiK_N Anaerobic cobal 22.0 4.2E+02 0.0092 21.3 7.4 26 89-114 100-125 (127)
119 PTZ00129 40S ribosomal protein 21.9 2E+02 0.0043 24.4 4.9 37 19-55 79-128 (149)
120 KOG0093 GTPase Rab3, small G p 21.7 2.9E+02 0.0063 23.8 5.8 43 49-99 95-137 (193)
121 PF13756 Stimulus_sens_1: Stim 21.6 71 0.0015 25.5 2.1 24 17-40 2-28 (112)
122 cd02871 GH18_chitinase_D-like 21.1 6.8E+02 0.015 23.3 11.0 75 42-120 65-146 (312)
123 COG2159 Predicted metal-depend 21.0 6.4E+02 0.014 23.5 8.7 95 110-246 113-209 (293)
124 TIGR03581 EF_0839 conserved hy 20.5 2.5E+02 0.0055 25.5 5.5 49 4-52 119-179 (236)
125 cd07944 DRE_TIM_HOA_like 4-hyd 20.4 6.2E+02 0.013 23.1 8.4 33 27-59 93-131 (266)
126 TIGR00734 hisAF_rel hisA/hisF 20.4 4.8E+02 0.01 23.2 7.5 71 16-101 36-114 (221)
127 PRK08091 ribulose-phosphate 3- 20.2 6.5E+02 0.014 22.7 11.3 93 17-125 79-179 (228)
128 COG5014 Predicted Fe-S oxidore 20.1 1.9E+02 0.0041 25.5 4.5 26 15-40 73-102 (228)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=5e-83 Score=599.72 Aligned_cols=301 Identities=54% Similarity=0.950 Sum_probs=251.5
Q ss_pred eeEeecCCCCCCCCHHHHHHHHHhCCCCeEEeecCChhHHHHHhcCCCeEEEecCCchhHHHHhhHHHHHHHHHhhcccc
Q 043874 4 IGVCYGMLGNNLPSKRDVIAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGLPNDDLQRIASNQAEANSWVQNNVRNF 83 (308)
Q Consensus 4 ~Gv~Y~~~~~~~ps~~~v~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~ 83 (308)
||||||+.++|+|++.+|++++|+++|++||||++|+++|+|++++||+|++||+|+++.++++++.+|..|++++|.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeecccccCCCcchHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhHHHH
Q 043874 84 ANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIR 163 (308)
Q Consensus 84 ~~~~~I~~I~VGNE~l~~~~~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~ 163 (308)
+|.++|+.|+||||++...... .|+++|+++|++|++.||+++|||+|+++++++..+||||+|.|++++.+.|.|+++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~-~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~ 159 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNA-YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLK 159 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGG-GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccce-eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHHH
Confidence 9999999999999999865333 899999999999999999988999999999999999999999999998889999999
Q ss_pred HHhhcCCCcccccCccccccCC-CccccccccccCCcceecCCCcchhhHHHHHHHHHHHHHHHcCCCCccEEEeeeccC
Q 043874 164 FLNENRSPLLFNLYPYFAIADN-RQISLDYALFGSQQTVVSDGSLSYLSLFDAMLDAVYAALEKTGGGSLDIVISESGWP 242 (308)
Q Consensus 164 fL~~~~d~~~vNiyPff~~~~~-~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~~~~~~~v~i~EtGWP 242 (308)
||.++++|||+|+||||.+..+ ..++++||+|++++... |++..|+||||+|+|++++||+++|+++++|+|+|||||
T Consensus 160 fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWP 238 (310)
T PF00332_consen 160 FLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWP 238 (310)
T ss_dssp HHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---
T ss_pred HhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccc
Confidence 9999999999999999999988 89999999999977666 888899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecCCCCCCCCCCCeeeecCCCC
Q 043874 243 TAGGDGALANVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPETERHWGLFAPNR 308 (308)
Q Consensus 243 s~G~~~~vas~~na~~y~~~~~~~~~~gtp~rp~~~~~~~~F~~fDe~wK~~~~~E~~wGlf~~d~ 308 (308)
|+|+.+ ++++||+.|++++++++.+|||+||+.++++||||+|||+||+++.+|||||||++||
T Consensus 239 s~G~~~--a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~ 302 (310)
T PF00332_consen 239 SAGDPG--ATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDG 302 (310)
T ss_dssp SSSSTT--CSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTS
T ss_pred cCCCCC--CCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCC
Confidence 999977 9999999999999999999999999989999999999999999877999999999986
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-51 Score=365.51 Aligned_cols=249 Identities=20% Similarity=0.343 Sum_probs=203.4
Q ss_pred CeeeEeecCCCCC--CCCHHHHHHHHHh-CCCC-eEEeecCC----hhHHHHHhcCCCeEEEecCCchhHHHHhhHHHHH
Q 043874 2 AQIGVCYGMLGNN--LPSKRDVIAVYNQ-NNIR-RMRLYDPN----GEALEALRGSNIEVMLGLPNDDLQRIASNQAEAN 73 (308)
Q Consensus 2 ~~~Gv~Y~~~~~~--~ps~~~v~~~l~~-~~~~-~VR~Y~~d----~~vl~a~~~~gi~V~lGv~~~~~~~~a~~~~~a~ 73 (308)
++.+|||+++.++ ||+.+++..+|.. .+++ .||+|++| ++|++|+...|+||+||||..+.-+.+.+..
T Consensus 44 g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~t--- 120 (305)
T COG5309 44 GFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEKT--- 120 (305)
T ss_pred cccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhhHHHH---
Confidence 4679999999875 9999999776653 3344 99999987 5899999999999999999876554433322
Q ss_pred HHHHhhccccCCCceEEEEeecccccCCCc-chHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCcccccc
Q 043874 74 SWVQNNVRNFANNVKFKYIAVGNEAKPGDN-FAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQ 152 (308)
Q Consensus 74 ~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~-~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~ 152 (308)
+..++++++.++.|++|+||||+|+|++ ++++|+++|..||++|+++|+++ ||+|+++|.+|.+ .
T Consensus 121 --il~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~g--pV~T~dsw~~~~~-n--------- 186 (305)
T COG5309 121 --ILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDG--PVTTVDSWNVVIN-N--------- 186 (305)
T ss_pred --HHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCC--ceeecccceeeeC-C---------
Confidence 2466788888999999999999999987 89999999999999999999974 9999999999875 1
Q ss_pred CcchhhhHHHHHHhhcCCCcccccCccccccCCCccccccccccCCcceecCCCcchhhHHHHHHHHHHHHHHHcCCCCc
Q 043874 153 DYRPILDPLIRFLNENRSPLLFNLYPYFAIADNRQISLDYALFGSQQTVVSDGSLSYLSLFDAMLDAVYAALEKTGGGSL 232 (308)
Q Consensus 153 ~~~~~~~~~l~fL~~~~d~~~vNiyPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~~~~~~ 232 (308)
+ .||+++||+|+|.||||+.+.. .++.+ .++-.|+.-++++ +| .+|
T Consensus 187 ---p-------~l~~~SDfia~N~~aYwd~~~~----------------a~~~~----~f~~~q~e~vqsa---~g-~~k 232 (305)
T COG5309 187 ---P-------ELCQASDFIAANAHAYWDGQTV----------------ANAAG----TFLLEQLERVQSA---CG-TKK 232 (305)
T ss_pred ---h-------HHhhhhhhhhcccchhccccch----------------hhhhh----HHHHHHHHHHHHh---cC-CCc
Confidence 2 2678999999999999999742 12222 4444556655544 34 449
Q ss_pred cEEEeeeccCCCCC-CC-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecCCCCCCC--CCCCeeeecCCCC
Q 043874 233 DIVISESGWPTAGG-DG-ALANVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGP--ETERHWGLFAPNR 308 (308)
Q Consensus 233 ~v~i~EtGWPs~G~-~~-~vas~~na~~y~~~~~~~~~~gtp~rp~~~~~~~~F~~fDe~wK~~~--~~E~~wGlf~~d~ 308 (308)
+++|+||||||.|. .| ++||++||++|++++++.+++ -+.++|+||+|||+||..+ ++|+|||++..|.
T Consensus 233 ~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~-------~G~d~fvfeAFdd~WK~~~~y~VEkywGv~~s~~ 305 (305)
T COG5309 233 TVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS-------CGYDVFVFEAFDDDWKADGSYGVEKYWGVLSSDR 305 (305)
T ss_pred cEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc-------cCccEEEeeeccccccCccccchhhceeeeccCC
Confidence 99999999999999 33 589999999999999998851 2899999999999999875 5999999998763
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.16 E-value=6.1e-09 Score=98.92 Aligned_cols=215 Identities=14% Similarity=0.239 Sum_probs=110.6
Q ss_pred HHHHHHHHHhCCCCeEEee---c------CC-hhH---HHHHhcCCCeEEEecCCch---------hH------HHHhhH
Q 043874 18 KRDVIAVYNQNNIRRMRLY---D------PN-GEA---LEALRGSNIEVMLGLPNDD---------LQ------RIASNQ 69 (308)
Q Consensus 18 ~~~v~~~l~~~~~~~VR~Y---~------~d-~~v---l~a~~~~gi~V~lGv~~~~---------~~------~~a~~~ 69 (308)
..++.++||..|++.||+- + ++ .++ .+.+++.||+|+|-.--++ ++ ++++-.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 3578999999999888875 1 12 234 4445679999999875432 11 111111
Q ss_pred HHHHHHHH---hhccccCCCceEEEEeecccccC---C--C--cchHHHHHHHHHHHHHHHHcCCCCceeEeeeeecccc
Q 043874 70 AEANSWVQ---NNVRNFANNVKFKYIAVGNEAKP---G--D--NFAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGAL 139 (308)
Q Consensus 70 ~~a~~wv~---~~v~~~~~~~~I~~I~VGNE~l~---~--~--~~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~ 139 (308)
.+.....+ +.+... ...++.|-||||.-. . + ...+.+...++...+++++..-..+|-|-.+...+.
T Consensus 106 ~~v~~yT~~vl~~l~~~--G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~- 182 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAA--GVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDN- 182 (332)
T ss_dssp HHHHHHHHHHHHHHHHT--T--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSH-
T ss_pred HHHHHHHHHHHHHHHHC--CCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCch-
Confidence 12222222 122222 466789999999643 1 1 246777777777778887755432333322221111
Q ss_pred ccccCCCccccccCcchhhhHHHHHHh---hcCCCcccccCccccccCCCccccccccccCCcceecCCCcchhhHHHHH
Q 043874 140 GESFPPSRGSFKQDYRPILDPLIRFLN---ENRSPLLFNLYPYFAIADNRQISLDYALFGSQQTVVSDGSLSYLSLFDAM 216 (308)
Q Consensus 140 ~~~~pps~~~f~~~~~~~~~~~l~fL~---~~~d~~~vNiyPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~ 216 (308)
....-..+.|. -.-|+|+++.||||...- +.+...
T Consensus 183 ----------------~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l--------------------------~~l~~~ 220 (332)
T PF07745_consen 183 ----------------DLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTL--------------------------EDLKNN 220 (332)
T ss_dssp ----------------HHHHHHHHHHHHTTGG-SEEEEEE-STTST-H--------------------------HHHHHH
T ss_pred ----------------HHHHHHHHHHHhcCCCcceEEEecCCCCcchH--------------------------HHHHHH
Confidence 11122222232 245999999999998731 112222
Q ss_pred HHHHHHHHHHcCCCCccEEEeeeccCCCCC-----C----------CCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccE
Q 043874 217 LDAVYAALEKTGGGSLDIVISESGWPTAGG-----D----------GALANVDNARTYNNNLIQHVKRGSPKRPGRPIET 281 (308)
Q Consensus 217 ~da~~~a~~~~~~~~~~v~i~EtGWPs~G~-----~----------~~vas~~na~~y~~~~~~~~~~gtp~rp~~~~~~ 281 (308)
+..+ .++. +|+|+|.|||||..-. . +.-+|++.|+.|++.+++.+.. .|. +.+.-+
T Consensus 221 l~~l---~~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~-~p~--~~g~Gv 291 (332)
T PF07745_consen 221 LNDL---ASRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKN-VPN--GGGLGV 291 (332)
T ss_dssp HHHH---HHHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHT-S----TTEEEE
T ss_pred HHHH---HHHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHH-hcc--CCeEEE
Confidence 3322 2332 4799999999999922 1 1135899999999999998862 111 236778
Q ss_pred EEEEe
Q 043874 282 YIFAM 286 (308)
Q Consensus 282 ~~F~~ 286 (308)
|+-|.
T Consensus 292 fYWeP 296 (332)
T PF07745_consen 292 FYWEP 296 (332)
T ss_dssp EEE-T
T ss_pred Eeecc
Confidence 77764
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.01 E-value=1.1e-08 Score=95.62 Aligned_cols=190 Identities=23% Similarity=0.317 Sum_probs=98.8
Q ss_pred eeEeecCCCC-------C-CCCHHH---HHHHHHhCCCCeEEeecCCh-----hHHHHHhcCCCeEEEecCCchhHHHHh
Q 043874 4 IGVCYGMLGN-------N-LPSKRD---VIAVYNQNNIRRMRLYDPNG-----EALEALRGSNIEVMLGLPNDDLQRIAS 67 (308)
Q Consensus 4 ~Gv~Y~~~~~-------~-~ps~~~---v~~~l~~~~~~~VR~Y~~d~-----~vl~a~~~~gi~V~lGv~~~~~~~~a~ 67 (308)
.||.|-|-++ + |-.++. -+.+||+.|++.||+|+.|+ ..+++|++.||=|++.+.... .++.+
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-ccccC
Confidence 5999988765 2 222332 24588999999999998883 589999999999999887642 11211
Q ss_pred h-H------HHHHHH--HHhhccccCCCceEEEEeecccccCCCc---chHHHHHHHHHHHHHHHHcCCCCceeEeeeee
Q 043874 68 N-Q------AEANSW--VQNNVRNFANNVKFKYIAVGNEAKPGDN---FAQYLVPAMRNIQNAINEAGLGNQIKVSTAIE 135 (308)
Q Consensus 68 ~-~------~~a~~w--v~~~v~~~~~~~~I~~I~VGNE~l~~~~---~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~ 135 (308)
. + ....++ +-++...| +++-+..+|||++.... .++.+-.+++.+|+-+++.++. +|||+-+-.
T Consensus 109 ~~P~~sw~~~l~~~~~~vid~fa~Y---~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsaa 184 (314)
T PF03198_consen 109 SDPAPSWNTDLLDRYFAVIDAFAKY---DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSAA 184 (314)
T ss_dssp TS------HHHHHHHHHHHHHHTT----TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE-
T ss_pred CCCcCCCCHHHHHHHHHHHHHhccC---CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEcc
Confidence 1 1 111111 22334444 78999999999998642 6889999999999999999885 599997743
Q ss_pred ccccccccCCCccccccCcchhhhHHHHHHh-----hcCCCcccccCccccccCCCccccccccccCCcceecCCCcchh
Q 043874 136 TGALGESFPPSRGSFKQDYRPILDPLIRFLN-----ENRSPLLFNLYPYFAIADNRQISLDYALFGSQQTVVSDGSLSYL 210 (308)
Q Consensus 136 ~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~-----~~~d~~~vNiyPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~ 210 (308)
- +- ....++.++|. +..|++++|.|-+=... .|+. .| |.
T Consensus 185 D-~~----------------~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~S----------tf~~-------SG--y~ 228 (314)
T PF03198_consen 185 D-DA----------------EIRQDLANYLNCGDDDERIDFFGLNSYEWCGDS----------TFET-------SG--YD 228 (314)
T ss_dssp ---T----------------TTHHHHHHHTTBTT-----S-EEEEE----SS------------HHH-------HS--HH
T ss_pred C-Ch----------------hHHHHHHHHhcCCCcccccceeeeccceecCCC----------cccc-------cc--HH
Confidence 1 11 12235566665 36699999998653221 1221 11 33
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCC
Q 043874 211 SLFDAMLDAVYAALEKTGGGSLDIVISESGWPTAG 245 (308)
Q Consensus 211 n~~d~~~da~~~a~~~~~~~~~~v~i~EtGWPs~G 245 (308)
.+.+ .. .++ .+||+.+|.|.-+..
T Consensus 229 ~l~~--------~f--~~y-~vPvffSEyGCn~~~ 252 (314)
T PF03198_consen 229 RLTK--------EF--SNY-SVPVFFSEYGCNTVT 252 (314)
T ss_dssp HHHH--------HH--TT--SS-EEEEEE---SSS
T ss_pred HHHH--------Hh--hCC-CCCeEEcccCCCCCC
Confidence 3321 12 233 599999999997654
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.37 E-value=5.8e-05 Score=70.04 Aligned_cols=213 Identities=19% Similarity=0.356 Sum_probs=115.7
Q ss_pred HHHHHHHHHhCCCCeEEee------cCC--------h------hHHHHHhcCCCeEEEecCCchh---HHHHhhHHHHHH
Q 043874 18 KRDVIAVYNQNNIRRMRLY------DPN--------G------EALEALRGSNIEVMLGLPNDDL---QRIASNQAEANS 74 (308)
Q Consensus 18 ~~~v~~~l~~~~~~~VR~Y------~~d--------~------~vl~a~~~~gi~V~lGv~~~~~---~~~a~~~~~a~~ 74 (308)
+.++.++||..|++.||+- ++| . .+-+.+++.||||++-.--++- +.- +.+. .+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak-Q~kP--ka 141 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK-QKKP--KA 141 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhh-cCCc--HH
Confidence 5667889999999888774 444 1 2344456789999998754421 100 0000 11
Q ss_pred HH-------Hhhcccc--------C-CCceEEEEeecccccCC-----Cc--chHHHHHHHHHHHHHHHHcCCCCceeEe
Q 043874 75 WV-------QNNVRNF--------A-NNVKFKYIAVGNEAKPG-----DN--FAQYLVPAMRNIQNAINEAGLGNQIKVS 131 (308)
Q Consensus 75 wv-------~~~v~~~--------~-~~~~I~~I~VGNE~l~~-----~~--~~~~l~~~~~~v~~aL~~~gl~~~v~Vs 131 (308)
|. +++|-.| . -...+.-|-||||.-.. ++ .-..+...++.--++++... ..|+|-
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~ 219 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVA 219 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEE
Confidence 11 1111111 0 13456688999998431 22 23445555555555555433 246664
Q ss_pred eeeeccccccccCCCccccccCcchhhhHHHHHHhh---cCCCcccccCccccccCCCccccccccccCCcceecCCCcc
Q 043874 132 TAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNE---NRSPLLFNLYPYFAIADNRQISLDYALFGSQQTVVSDGSLS 208 (308)
Q Consensus 132 t~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~---~~d~~~vNiyPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~ 208 (308)
.-.+ + |--.+.|+ -+.+.|.+ .-|.|++--||||.+.-+
T Consensus 220 lHla-----~--g~~n~~y~--------~~fd~ltk~nvdfDVig~SyYpyWhgtl~----------------------- 261 (403)
T COG3867 220 LHLA-----E--GENNSLYR--------WIFDELTKRNVDFDVIGSSYYPYWHGTLN----------------------- 261 (403)
T ss_pred EEec-----C--CCCCchhh--------HHHHHHHHcCCCceEEeeeccccccCcHH-----------------------
Confidence 3321 1 11111222 22233333 337899999999998521
Q ss_pred hhhHHHHHHHHHHHHHHHcCCCCccEEEeeecc--------------CCCCCC-CCCCCHHHHHHHHHHHHHHHhhcCCC
Q 043874 209 YLSLFDAMLDAVYAALEKTGGGSLDIVISESGW--------------PTAGGD-GALANVDNARTYNNNLIQHVKRGSPK 273 (308)
Q Consensus 209 y~n~~d~~~da~~~a~~~~~~~~~~v~i~EtGW--------------Ps~G~~-~~vas~~na~~y~~~~~~~~~~gtp~ 273 (308)
|+- ..++. +.. .-+|+|+|.||+. |+.+.. ++-.++..|.+|.+++++.+. -.|.
T Consensus 262 --nL~-~nl~d----ia~--rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~-nvp~ 331 (403)
T COG3867 262 --NLT-TNLND----IAS--RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVK-NVPK 331 (403)
T ss_pred --HHH-hHHHH----HHH--HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHH-hCCC
Confidence 111 11111 111 1357999999999 666652 334777899999999999986 1222
Q ss_pred CCCCCccEEEEE
Q 043874 274 RPGRPIETYIFA 285 (308)
Q Consensus 274 rp~~~~~~~~F~ 285 (308)
. ++.-+|+.|
T Consensus 332 ~--~GlGvFYWE 341 (403)
T COG3867 332 S--NGLGVFYWE 341 (403)
T ss_pred C--CceEEEEec
Confidence 1 245555554
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.24 E-value=0.00056 Score=70.34 Aligned_cols=250 Identities=13% Similarity=0.072 Sum_probs=134.8
Q ss_pred eeEeecCCC---CCCCCHHHH---HHHHHhCCCCeEEeecC--ChhHHHHHhcCCCeEEEecCCc---------------
Q 043874 4 IGVCYGMLG---NNLPSKRDV---IAVYNQNNIRRMRLYDP--NGEALEALRGSNIEVMLGLPND--------------- 60 (308)
Q Consensus 4 ~Gv~Y~~~~---~~~ps~~~v---~~~l~~~~~~~VR~Y~~--d~~vl~a~~~~gi~V~lGv~~~--------------- 60 (308)
.|+|+-... ...++.+.+ +++||+.|++.||+-.. ++..+.+|...||-|+.=++.-
T Consensus 295 rG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 295 KGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred EeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 477763221 223455544 56889999999999432 4789999999999888654310
Q ss_pred hhHHHH------hhHHHHHHHHHhhccccCCCceEEEEeecccccCCCcchHHHHHHHHHHHHHHHHcCCCCceeEeeee
Q 043874 61 DLQRIA------SNQAEANSWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINEAGLGNQIKVSTAI 134 (308)
Q Consensus 61 ~~~~~a------~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~ 134 (308)
+...+. +..+...+-+++.|.++.-...|..=++|||.-...+ .....++.+.+.+++..- .=+|+.+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~~---~~~~~~~~l~~~~k~~Dp--tR~vt~~~ 449 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASREQ---GAREYFAPLAELTRKLDP--TRPVTCVN 449 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCccch---hHHHHHHHHHHHHHhhCC--CCceEEEe
Confidence 000010 0111222223444555433346889999999743222 222334444455554432 23676664
Q ss_pred eccccccccCCCccccccCcchhhhHHHHHHhhcCCCcccccCccccccCCCccccccccccCCcceecCCCcchhhHHH
Q 043874 135 ETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYFAIADNRQISLDYALFGSQQTVVSDGSLSYLSLFD 214 (308)
Q Consensus 135 ~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n~~d 214 (308)
.... +|.. + .+.+..|+++.|.|+=|-.... + .+ .....++
T Consensus 450 ~~~~-----~~~~----~-----------~~~~~~Dv~~~N~Y~~wy~~~~-~----~~--------------~~~~~~~ 490 (604)
T PRK10150 450 VMFA-----TPDT----D-----------TVSDLVDVLCLNRYYGWYVDSG-D----LE--------------TAEKVLE 490 (604)
T ss_pred cccC-----Cccc----c-----------cccCcccEEEEcccceecCCCC-C----HH--------------HHHHHHH
Confidence 2110 0100 0 0224469999999863321100 0 00 0112223
Q ss_pred HHHHHHHHHHHHcCCCCccEEEeeeccCCCCC----CCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecCC
Q 043874 215 AMLDAVYAALEKTGGGSLDIVISESGWPTAGG----DGALANVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDEN 290 (308)
Q Consensus 215 ~~~da~~~a~~~~~~~~~~v~i~EtGWPs~G~----~~~vas~~na~~y~~~~~~~~~~gtp~rp~~~~~~~~F~~fDe~ 290 (308)
..+... .++ + ++|++++|.|+.+.-+ ....-|.+.|..|++...+.+. .+|. -.-.|+..+||-.
T Consensus 491 ~~~~~~---~~~--~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~----~~p~-~~G~~iW~~~D~~ 559 (604)
T PRK10150 491 KELLAW---QEK--L-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFD----RVPA-VVGEQVWNFADFA 559 (604)
T ss_pred HHHHHH---HHh--c-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHh----cCCc-eEEEEEEeeeccC
Confidence 223221 111 2 7899999999876422 1113678899998888777664 2343 4578999999965
Q ss_pred CCCCC--CCCCeeeecCCCC
Q 043874 291 GKTGP--ETERHWGLFAPNR 308 (308)
Q Consensus 291 wK~~~--~~E~~wGlf~~d~ 308 (308)
+..+. .-..+.||++.|+
T Consensus 560 ~~~g~~~~~g~~~Gl~~~dr 579 (604)
T PRK10150 560 TSQGILRVGGNKKGIFTRDR 579 (604)
T ss_pred CCCCCcccCCCcceeEcCCC
Confidence 54321 1234789998874
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.01 E-value=0.00025 Score=64.68 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=71.6
Q ss_pred CHHHHHHHHHhCCCCeEEeecC-------------C-------hhHHHHHhcCCCeEEEecCCch----hHHHHhhHHHH
Q 043874 17 SKRDVIAVYNQNNIRRMRLYDP-------------N-------GEALEALRGSNIEVMLGLPNDD----LQRIASNQAEA 72 (308)
Q Consensus 17 s~~~v~~~l~~~~~~~VR~Y~~-------------d-------~~vl~a~~~~gi~V~lGv~~~~----~~~~a~~~~~a 72 (308)
..++.++.+++.|++.|||.-. + ..+|++|++.||+|+|-+.... ...........
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~~~~~~~ 101 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGYGNNDTA 101 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTTTTHHHH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccccccchhh
Confidence 6788899999999999999711 1 2588889999999999876530 00000111111
Q ss_pred HHHHH---hhccccC-CCceEEEEeecccccCCCc-------chHHHHHHHHHHHHHHHHcCCCC
Q 043874 73 NSWVQ---NNVRNFA-NNVKFKYIAVGNEAKPGDN-------FAQYLVPAMRNIQNAINEAGLGN 126 (308)
Q Consensus 73 ~~wv~---~~v~~~~-~~~~I~~I~VGNE~l~~~~-------~~~~l~~~~~~v~~aL~~~gl~~ 126 (308)
.+|++ +.+...| ....|.++=+.||+..... ....+.+.++.+-+++++.+-..
T Consensus 102 ~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 102 QAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 12211 1233333 3355779999999987532 24778889999999999998753
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.27 E-value=0.045 Score=50.16 Aligned_cols=70 Identities=16% Similarity=0.135 Sum_probs=45.1
Q ss_pred HHHcCCCCccEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecC-CCCCCCCCCCeee
Q 043874 224 LEKTGGGSLDIVISESGWPTAGGDGALANVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDE-NGKTGPETERHWG 302 (308)
Q Consensus 224 ~~~~~~~~~~v~i~EtGWPs~G~~~~vas~~na~~y~~~~~~~~~~gtp~rp~~~~~~~~F~~fDe-~wK~~~~~E~~wG 302 (308)
|+++..-++||+|||.+-|.. ++++.|+.+++.++..+.+ .| . ...+++..+.|. .|.. +.+-|
T Consensus 175 l~~~~~~g~pi~iTE~dv~~~------~~~~~qA~~~~~~l~~~~~-~p---~-v~gi~~Wg~~d~~~W~~----~~~~~ 239 (254)
T smart00633 175 LDRFASLGLEIQITELDISGY------PNPQAQAADYEEVFKACLA-HP---A-VTGVTVWGVTDKYSWLD----GGAPL 239 (254)
T ss_pred HHHHHHcCCceEEEEeecCCC------CcHHHHHHHHHHHHHHHHc-CC---C-eeEEEEeCCccCCcccC----CCCce
Confidence 444433478999999999864 3448899999999888752 22 1 234555555553 3443 24568
Q ss_pred ecCCCC
Q 043874 303 LFAPNR 308 (308)
Q Consensus 303 lf~~d~ 308 (308)
||+.|+
T Consensus 240 L~d~~~ 245 (254)
T smart00633 240 LFDANY 245 (254)
T ss_pred eECCCC
Confidence 888764
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.20 E-value=0.014 Score=53.24 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=83.3
Q ss_pred ceEEEEeecccccCCCc---chHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhHHHH
Q 043874 87 VKFKYIAVGNEAKPGDN---FAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIR 163 (308)
Q Consensus 87 ~~I~~I~VGNE~l~~~~---~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~ 163 (308)
..++.|..=||+=...+ ++++.+...++.-..|+. ..+++..+..-..-. . +|+. .+-|...++
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~----~~~~l~sPa~~~~~~-~-~~~g-------~~Wl~~F~~ 130 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS----PGVKLGSPAVAFTNG-G-TPGG-------LDWLSQFLS 130 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc----CCcEEECCeecccCC-C-CCCc-------cHHHHHHHH
Confidence 46788888999865432 677777777777777663 247777664311100 0 0100 122333333
Q ss_pred HHh--hcCCCcccccCccccccCCCccccccccccCCcceecCCCcchhhHHHHHHHHHHHHHHHcCCCCccEEEeeecc
Q 043874 164 FLN--ENRSPLLFNLYPYFAIADNRQISLDYALFGSQQTVVSDGSLSYLSLFDAMLDAVYAALEKTGGGSLDIVISESGW 241 (308)
Q Consensus 164 fL~--~~~d~~~vNiyPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~~~~~~~v~i~EtGW 241 (308)
-.. ...|++.||.| .... .-|...++.+ .++.+ +||+|||.|+
T Consensus 131 ~~~~~~~~D~iavH~Y---~~~~--------------------------~~~~~~i~~~---~~~~~---kPIWITEf~~ 175 (239)
T PF11790_consen 131 ACARGCRVDFIAVHWY---GGDA--------------------------DDFKDYIDDL---HNRYG---KPIWITEFGC 175 (239)
T ss_pred hcccCCCccEEEEecC---CcCH--------------------------HHHHHHHHHH---HHHhC---CCEEEEeecc
Confidence 221 26688877777 1100 1122233333 23333 8999999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEe
Q 043874 242 PTAGGDGALANVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAM 286 (308)
Q Consensus 242 Ps~G~~~~vas~~na~~y~~~~~~~~~~gtp~rp~~~~~~~~F~~ 286 (308)
... ... .+.+.++.|++..+..+.+ ++. --.++||..
T Consensus 176 ~~~-~~~--~~~~~~~~fl~~~~~~ld~----~~~-VeryawF~~ 212 (239)
T PF11790_consen 176 WNG-GSQ--GSDEQQASFLRQALPWLDS----QPY-VERYAWFGF 212 (239)
T ss_pred cCC-CCC--CCHHHHHHHHHHHHHHHhc----CCC-eeEEEeccc
Confidence 872 223 8889999999999999852 221 236888883
No 10
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.07 E-value=0.028 Score=52.58 Aligned_cols=92 Identities=14% Similarity=0.103 Sum_probs=52.4
Q ss_pred eeEeecCCCC---CCCCHHHH---HHHHHhCCCCeEEeecC--ChhHHHHHhcCCCeEEEecCCc-----h---------
Q 043874 4 IGVCYGMLGN---NLPSKRDV---IAVYNQNNIRRMRLYDP--NGEALEALRGSNIEVMLGLPND-----D--------- 61 (308)
Q Consensus 4 ~Gv~Y~~~~~---~~ps~~~v---~~~l~~~~~~~VR~Y~~--d~~vl~a~~~~gi~V~lGv~~~-----~--------- 61 (308)
.|||+..... ..++.+++ ++++|+.|++.||+..- ++..+.+|...||-|+..++.. .
T Consensus 18 ~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~ 97 (298)
T PF02836_consen 18 RGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYDA 97 (298)
T ss_dssp EEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTT
T ss_pred EEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccCC
Confidence 4899876532 24556655 45788999999999643 3789999999999999776541 0
Q ss_pred -hHHHHhhHHHHHHHHHhhccccCCCceEEEEeecccc
Q 043874 62 -LQRIASNQAEANSWVQNNVRNFANNVKFKYIAVGNEA 98 (308)
Q Consensus 62 -~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~ 98 (308)
.+.. .+.+.+.+++.|..+.-.-.|..=++|||.
T Consensus 98 ~~~~~---~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 98 DDPEF---RENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TSGGH---HHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCHHH---HHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 1111 112222233444443322347788899999
No 11
>TIGR03356 BGL beta-galactosidase.
Probab=96.94 E-value=0.21 Score=49.48 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCCeEEee--------c----CC-------hhHHHHHhcCCCeEEEecCCchhH
Q 043874 18 KRDVIAVYNQNNIRRMRLY--------D----PN-------GEALEALRGSNIEVMLGLPNDDLQ 63 (308)
Q Consensus 18 ~~~v~~~l~~~~~~~VR~Y--------~----~d-------~~vl~a~~~~gi~V~lGv~~~~~~ 63 (308)
-+|-+++|++.|++++|+= . .+ .++|..|.+.||+++|.+..-+++
T Consensus 56 y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P 120 (427)
T TIGR03356 56 YEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLP 120 (427)
T ss_pred HHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCcc
Confidence 3456789999999999862 1 12 368999999999999999654443
No 12
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=86.98 E-value=5.7 Score=38.31 Aligned_cols=82 Identities=12% Similarity=0.212 Sum_probs=51.3
Q ss_pred HHHHHHHHhCCCCeEEeecCC----------------hhHHHHHhcCCCeEEEecCCchhHHH-----------------
Q 043874 19 RDVIAVYNQNNIRRMRLYDPN----------------GEALEALRGSNIEVMLGLPNDDLQRI----------------- 65 (308)
Q Consensus 19 ~~v~~~l~~~~~~~VR~Y~~d----------------~~vl~a~~~~gi~V~lGv~~~~~~~~----------------- 65 (308)
++.++++++.|++.|||-... ..+|..+++.||+|+|+++....+..
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 455778888999999974321 36888899999999999974321111
Q ss_pred ---------H----hhHHHHHHHHHhhccccCCCceEEEEeecccccC
Q 043874 66 ---------A----SNQAEANSWVQNNVRNFANNVKFKYIAVGNEAKP 100 (308)
Q Consensus 66 ---------a----~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~ 100 (308)
. .-.+.+.+.++.-+..|.....|.++-|.||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 0 0123344444444445544457999999999765
No 13
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=85.70 E-value=6.2 Score=38.08 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=73.6
Q ss_pred CCCeEEeecC-ChhHHHHHhcCCCeEEEecCCchhHHHHhhHHHHHHHHHhh---ccccCCCceEEEEeecccccCC-C-
Q 043874 29 NIRRMRLYDP-NGEALEALRGSNIEVMLGLPNDDLQRIASNQAEANSWVQNN---VRNFANNVKFKYIAVGNEAKPG-D- 102 (308)
Q Consensus 29 ~~~~VR~Y~~-d~~vl~a~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~---v~~~~~~~~I~~I~VGNE~l~~-~- 102 (308)
.++.|-+|+. ++.++..+...|++|++..-.. .+.+ ++.+.-.+++++. +..| .+.+|-+==|-... +
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l-~~~~~R~~fi~siv~~~~~~----gfDGIdIDwE~p~~~~~ 128 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQI-SNPTYRTQWIQQKVELAKSQ----FMDGINIDIEQPITKGS 128 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHc-CCHHHHHHHHHHHHHHHHHh----CCCeEEEcccCCCCCCc
Confidence 3678888854 5789999999999999864322 1222 2222222333222 2333 34566555554432 1
Q ss_pred cchHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhHHHHHHhhcCCCcccccCcccc
Q 043874 103 NFAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYFA 181 (308)
Q Consensus 103 ~~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~ 181 (308)
.....+...|+++|++|++.+..- .++.+..+. |+..... .+ -+..|++.+|++.|-.|=|..
T Consensus 129 ~d~~~~t~llkelr~~l~~~~~~~--~Lsvav~~~-------p~~~~~~-~y------d~~~l~~~vD~v~lMtYD~h~ 191 (358)
T cd02875 129 PEYYALTELVKETTKAFKKENPGY--QISFDVAWS-------PSCIDKR-CY------DYTGIADASDFLVVMDYDEQS 191 (358)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCc--EEEEEEecC-------ccccccc-cc------CHHHHHhhCCEeeEEeecccC
Confidence 245678899999999999875432 344433221 1111100 00 123467888999998887754
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=82.76 E-value=0.28 Score=48.89 Aligned_cols=272 Identities=18% Similarity=0.190 Sum_probs=125.7
Q ss_pred HHHHHHHHHhCCCCeEEee--------c-----CC-------hhHHHHHhcCCCeEEEecCCchhHHHHhhHHHHHHHHH
Q 043874 18 KRDVIAVYNQNNIRRMRLY--------D-----PN-------GEALEALRGSNIEVMLGLPNDDLQRIASNQAEANSWVQ 77 (308)
Q Consensus 18 ~~~v~~~l~~~~~~~VR~Y--------~-----~d-------~~vl~a~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~ 77 (308)
-+|-+++||+.|+++.|+= + .| .+++..|.+.||+.+|.+..-+++..-.+ ...|..
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~---~ggw~~ 136 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED---YGGWLN 136 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH---HTGGGS
T ss_pred hhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee---cccccC
Confidence 3466889999999999864 1 11 36999999999999999987655432111 111211
Q ss_pred ------------hhccccCCCceEEEEeecccccCC-------C------cc-------hHHHHHHHHHHHHHHHHcCCC
Q 043874 78 ------------NNVRNFANNVKFKYIAVGNEAKPG-------D------NF-------AQYLVPAMRNIQNAINEAGLG 125 (308)
Q Consensus 78 ------------~~v~~~~~~~~I~~I~VGNE~l~~-------~------~~-------~~~l~~~~~~v~~aL~~~gl~ 125 (308)
.-+..+ .++|..-+.=||...- + .. ...++-+-..+.+++++..-.
T Consensus 137 ~~~~~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~ 214 (455)
T PF00232_consen 137 RETVDWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD 214 (455)
T ss_dssp THHHHHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc
Confidence 112233 4678888888886430 1 11 223444445555666666533
Q ss_pred CceeEeeeeecccccc--ccCCCc---ccccc--------------Ccchhhh--------------HHHHHHhhcCCCc
Q 043874 126 NQIKVSTAIETGALGE--SFPPSR---GSFKQ--------------DYRPILD--------------PLIRFLNENRSPL 172 (308)
Q Consensus 126 ~~v~Vst~~~~~~~~~--~~pps~---~~f~~--------------~~~~~~~--------------~~l~fL~~~~d~~ 172 (308)
.+|+.+.......- ..|+.. +...+ ++...|. .-+..|....||+
T Consensus 215 --~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFl 292 (455)
T PF00232_consen 215 --GKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFL 292 (455)
T ss_dssp --SEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEE
T ss_pred --eEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhh
Confidence 57777665442210 011111 00000 0001111 1223345679999
Q ss_pred ccccCccccccCCC--ccccccccccCCc------ceecCCCc-chhhHHHHHHHHHHHHHHHcCCCCccEEEeeeccCC
Q 043874 173 LFNLYPYFAIADNR--QISLDYALFGSQQ------TVVSDGSL-SYLSLFDAMLDAVYAALEKTGGGSLDIVISESGWPT 243 (308)
Q Consensus 173 ~vNiyPff~~~~~~--~~~~~~a~f~~~~------~~~~d~~~-~y~n~~d~~~da~~~a~~~~~~~~~~v~i~EtGWPs 243 (308)
++|-|.=.--...+ .....+....... ....+.+- .|-.-+ .+.+...-++ ++++||+|||.|++.
T Consensus 293 GiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl---~~~L~~l~~~--Y~~~pI~ITENG~~~ 367 (455)
T PF00232_consen 293 GINYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGL---RDVLRYLKDR--YGNPPIYITENGIGD 367 (455)
T ss_dssp EEEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHH---HHHHHHHHHH--HTSSEEEEEEE---E
T ss_pred hhccccceeeccCccccccccccCCccccccccccccccccCcccccchH---hhhhhhhccc--cCCCcEEEecccccc
Confidence 99998632222111 1111111000000 00111121 111111 2222111122 567899999999987
Q ss_pred CCCC--CC---CCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecCCCCCCCCCCCeeeecCCC
Q 043874 244 AGGD--GA---LANVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPETERHWGLFAPN 307 (308)
Q Consensus 244 ~G~~--~~---vas~~na~~y~~~~~~~~~~gtp~rp~~~~~~~~F~~fDe~wK~~~~~E~~wGlf~~d 307 (308)
.... +. .--..--+.+++.+.+.+..|.+.+ -+|..++.|- +--..+..+.|||++.|
T Consensus 368 ~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~-----GY~~WSl~Dn-~Ew~~Gy~~rfGl~~VD 430 (455)
T PF00232_consen 368 PDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVR-----GYFAWSLLDN-FEWAEGYKKRFGLVYVD 430 (455)
T ss_dssp ETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEE-----EEEEETSB----BGGGGGGSE--SEEEE
T ss_pred cccccccCcCcHHHHHHHHHHHHHHHhhhccCCCee-----eEeeeccccc-cccccCccCccCceEEc
Confidence 7652 10 0111223445555555554566433 4777888874 32223589999999876
No 15
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=82.59 E-value=13 Score=40.97 Aligned_cols=94 Identities=17% Similarity=0.070 Sum_probs=56.5
Q ss_pred eeEeecCC---CCCCCCHHHH---HHHHHhCCCCeEEeecC--ChhHHHHHhcCCCeEEEecCCc--------------h
Q 043874 4 IGVCYGML---GNNLPSKRDV---IAVYNQNNIRRMRLYDP--NGEALEALRGSNIEVMLGLPND--------------D 61 (308)
Q Consensus 4 ~Gv~Y~~~---~~~~ps~~~v---~~~l~~~~~~~VR~Y~~--d~~vl~a~~~~gi~V~lGv~~~--------------~ 61 (308)
.|+|+-.. .....+++.+ ++++|+.|++.||+-.. ++..+.+|.+.||=|+--+... +
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 48886433 2223456655 55888999999998643 2578999999999888754211 1
Q ss_pred hHHHHhhHHHHHHHHHhhccccCCCceEEEEeecccccC
Q 043874 62 LQRIASNQAEANSWVQNNVRNFANNVKFKYIAVGNEAKP 100 (308)
Q Consensus 62 ~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~ 100 (308)
.+... ++..+-+++.|.++.-.-.|..=++|||.-.
T Consensus 417 ~p~~~---~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 417 DPQWE---KVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CHHHH---HHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 11111 1112223344444432345888889999854
No 16
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=79.27 E-value=5.5 Score=38.00 Aligned_cols=175 Identities=15% Similarity=0.231 Sum_probs=68.9
Q ss_pred hHHHHHhcCCCeEEEecCCchhHHHHhhHHHHHHHHHhhc---cccC--CCceEEEEeecccccCCC---c-chHHHHHH
Q 043874 41 EALEALRGSNIEVMLGLPNDDLQRIASNQAEANSWVQNNV---RNFA--NNVKFKYIAVGNEAKPGD---N-FAQYLVPA 111 (308)
Q Consensus 41 ~vl~a~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v---~~~~--~~~~I~~I~VGNE~l~~~---~-~~~~l~~~ 111 (308)
.+..-+..+|++|+.|+..-.-.........-..|=-+|. .+|- ..-.|.+-=.|||.--.+ . ++.++..-
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 3444456799999999974211111111123345544443 3331 122466777899965322 2 67888888
Q ss_pred HHHHHHHHHHc---CCCCceeEeeeeeccccccccCCCccccccCcchhhhHHHHHHhh-cCCCcccccCccccccCCCc
Q 043874 112 MRNIQNAINEA---GLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNE-NRSPLLFNLYPYFAIADNRQ 187 (308)
Q Consensus 112 ~~~v~~aL~~~---gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~-~~d~~~vNiyPff~~~~~~~ 187 (308)
...+|+.|++. .+.+ -.|.-+... |.. ..+++.|+-... ..|.+.-|.|+. ....++.
T Consensus 193 ~~~Lr~il~~iy~~~~~~-P~v~gP~~~-------------~d~---~w~~~FL~~~g~~~vD~vT~H~Y~l-g~g~d~~ 254 (319)
T PF03662_consen 193 FIQLRKILNEIYKNALPG-PLVVGPGGF-------------FDA---DWLKEFLKASGPGVVDAVTWHHYNL-GSGRDPA 254 (319)
T ss_dssp H---HHHHHHHHHH-TT----EEEEEES-------------S-G---GGHHHHHHHTTTT--SEEEEEEEEE---TT-TT
T ss_pred HHHHHHHHHHHHhcCCCC-CeEECCCCC-------------CCH---HHHHHHHHhcCCCccCEEEEEecCC-CCCchHH
Confidence 88888888764 1111 234444321 111 234444444434 378899999863 3221111
Q ss_pred cccccccccCCcceecCCCcchhhHHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCC
Q 043874 188 ISLDYALFGSQQTVVSDGSLSYLSLFDAMLDAVYAALEKTGGGSLDIVISESGWPTAGG 246 (308)
Q Consensus 188 ~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~~~~~~~v~i~EtGWPs~G~ 246 (308)
. .+ ...++. |-+.+..++..+...+++.+ ++++++++|||=...|+
T Consensus 255 l-~~---------~~l~p~--~Ld~~~~~~~~~~~~v~~~~-p~~~~WlGEtg~Ay~gG 300 (319)
T PF03662_consen 255 L-IE---------DFLNPS--YLDTLADTFQKLQQVVQEYG-PGKPVWLGETGSAYNGG 300 (319)
T ss_dssp --HH---------HHTS----HHHHHHHHHHHHH-----HH-H---EEEEEEEEESTT-
T ss_pred H-HH---------HhcChh--hhhHHHHHHHHHhhhhcccC-CCCCeEEeCcccccCCC
Confidence 0 00 011221 21222233333333333333 67899999999777665
No 17
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=78.40 E-value=6.4 Score=39.50 Aligned_cols=47 Identities=11% Similarity=0.197 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCCeEEe-------e--c---CC-------hhHHHHHhcCCCeEEEecCCchhHH
Q 043874 18 KRDVIAVYNQNNIRRMRL-------Y--D---PN-------GEALEALRGSNIEVMLGLPNDDLQR 64 (308)
Q Consensus 18 ~~~v~~~l~~~~~~~VR~-------Y--~---~d-------~~vl~a~~~~gi~V~lGv~~~~~~~ 64 (308)
-+|-+++|+++|++.-|+ + + .+ .+++.+|.+.||+-+|.+..-+++.
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 456788999998887775 2 1 12 3699999999999999998766553
No 18
>PLN02814 beta-glucosidase
Probab=76.15 E-value=6.5 Score=39.86 Aligned_cols=71 Identities=21% Similarity=0.347 Sum_probs=43.5
Q ss_pred CCCccEEEeeeccCCCCCCCC---CCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecC-CCCCCCCCCCeeeec
Q 043874 229 GGSLDIVISESGWPTAGGDGA---LANVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDE-NGKTGPETERHWGLF 304 (308)
Q Consensus 229 ~~~~~v~i~EtGWPs~G~~~~---vas~~na~~y~~~~~~~~~~gtp~rp~~~~~~~~F~~fDe-~wK~~~~~E~~wGlf 304 (308)
+++.||+|||-|++...+ +. .-=..--+.+++.+.+++..|.+.+ -||.-++.|- .|.. +.++.|||+
T Consensus 385 Y~~ppI~ITENG~~~~~~-g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~-----GY~~WSllDnfEW~~--Gy~~RfGLv 456 (504)
T PLN02814 385 YNNPPIYILENGMPMKHD-STLQDTPRVEFIQAYIGAVLNAIKNGSDTR-----GYFVWSMIDLYELLG--GYTTSFGMY 456 (504)
T ss_pred cCCCCEEEECCCCCCCCC-CcccCHHHHHHHHHHHHHHHHHHHcCCCEE-----EEeeccchhhhchhc--cccCccceE
Confidence 445589999999975421 11 0112233455555555555677554 4777777773 3433 489999999
Q ss_pred CCC
Q 043874 305 APN 307 (308)
Q Consensus 305 ~~d 307 (308)
+.|
T Consensus 457 yVD 459 (504)
T PLN02814 457 YVN 459 (504)
T ss_pred EEC
Confidence 876
No 19
>PLN02998 beta-glucosidase
Probab=75.07 E-value=3.6 Score=41.59 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=43.7
Q ss_pred CCCccEEEeeeccCCCCC--CCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecC-CCCCCCCCCCeeeecC
Q 043874 229 GGSLDIVISESGWPTAGG--DGALANVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDE-NGKTGPETERHWGLFA 305 (308)
Q Consensus 229 ~~~~~v~i~EtGWPs~G~--~~~vas~~na~~y~~~~~~~~~~gtp~rp~~~~~~~~F~~fDe-~wK~~~~~E~~wGlf~ 305 (308)
+++.||+|||-|+....+ ....-=.+--+.+++.+.+.+..|.+.+ -||.-++.|- .|.. +..+.|||++
T Consensus 390 Y~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~-----GY~~WSl~DnfEW~~--Gy~~RfGLv~ 462 (497)
T PLN02998 390 YGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVK-----GYFQWSLMDVFELFG--GYERSFGLLY 462 (497)
T ss_pred cCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEE-----EEeeccchhhhchhc--cccCccceEE
Confidence 344489999999986531 1000112233455555555555676544 4777777773 3443 4899999998
Q ss_pred CC
Q 043874 306 PN 307 (308)
Q Consensus 306 ~d 307 (308)
.|
T Consensus 463 VD 464 (497)
T PLN02998 463 VD 464 (497)
T ss_pred EC
Confidence 76
No 20
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=74.82 E-value=33 Score=37.95 Aligned_cols=94 Identities=17% Similarity=0.084 Sum_probs=57.7
Q ss_pred eeEeecCC---CCCCCCHHHH---HHHHHhCCCCeEEeecC--ChhHHHHHhcCCCeEEEecCCc-----------hhHH
Q 043874 4 IGVCYGML---GNNLPSKRDV---IAVYNQNNIRRMRLYDP--NGEALEALRGSNIEVMLGLPND-----------DLQR 64 (308)
Q Consensus 4 ~Gv~Y~~~---~~~~ps~~~v---~~~l~~~~~~~VR~Y~~--d~~vl~a~~~~gi~V~lGv~~~-----------~~~~ 64 (308)
.|+|+-.. .....+++++ ++++|+.|++.||+-.- ++..+..|...||=|+--++.. +.+.
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~ 432 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHH
Confidence 48887533 2234566665 55778999999999533 4689999999999888665431 0111
Q ss_pred HHhhHHHHHHHHHhhccccCCCceEEEEeecccccC
Q 043874 65 IASNQAEANSWVQNNVRNFANNVKFKYIAVGNEAKP 100 (308)
Q Consensus 65 ~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~ 100 (308)
+. ++..+-+++.|.+..-.-.|..=++|||.-.
T Consensus 433 ~~---~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~ 465 (1027)
T PRK09525 433 WL---PAMSERVTRMVQRDRNHPSIIIWSLGNESGH 465 (1027)
T ss_pred HH---HHHHHHHHHHHHhCCCCCEEEEEeCccCCCc
Confidence 11 1122223344444433346888899999743
No 21
>PLN02849 beta-glucosidase
Probab=72.42 E-value=9.6 Score=38.66 Aligned_cols=73 Identities=21% Similarity=0.337 Sum_probs=43.9
Q ss_pred CCCccEEEeeeccCCCCC-CCC---CCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEEEEeecCCCCCCCCCCCeeeec
Q 043874 229 GGSLDIVISESGWPTAGG-DGA---LANVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPETERHWGLF 304 (308)
Q Consensus 229 ~~~~~v~i~EtGWPs~G~-~~~---vas~~na~~y~~~~~~~~~~gtp~rp~~~~~~~~F~~fDe~wK~~~~~E~~wGlf 304 (308)
+++.||+|||-|++.... .+. .-=...-+.+++.+.+.+..|.+.+ -||.-++.|- +--..+.++.|||+
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~-----GY~~WSl~Dn-fEW~~Gy~~RfGLi 456 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTR-----GYFVWSFMDL-YELLKGYEFSFGLY 456 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEE-----EEeeccchhh-hchhccccCccceE
Confidence 444489999999986542 110 0112233455555555555676544 4777777774 22223489999999
Q ss_pred CCC
Q 043874 305 APN 307 (308)
Q Consensus 305 ~~d 307 (308)
+.|
T Consensus 457 ~VD 459 (503)
T PLN02849 457 SVN 459 (503)
T ss_pred EEC
Confidence 876
No 22
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=72.12 E-value=44 Score=33.93 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=39.6
Q ss_pred HHhhccccCC-CceEEEEeecccccCC-----C-c----chHHHHHHHHH-HHHHHHHcCCCCceeEeee
Q 043874 76 VQNNVRNFAN-NVKFKYIAVGNEAKPG-----D-N----FAQYLVPAMRN-IQNAINEAGLGNQIKVSTA 133 (308)
Q Consensus 76 v~~~v~~~~~-~~~I~~I~VGNE~l~~-----~-~----~~~~l~~~~~~-v~~aL~~~gl~~~v~Vst~ 133 (308)
+.+-|+.|-. .-.|.+|++.||+... . + ++.++...|++ ++-+|++.+++.++|+-.-
T Consensus 210 ~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~ 279 (496)
T PF02055_consen 210 FVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIY 279 (496)
T ss_dssp HHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEE
Confidence 3444555422 4679999999999852 1 1 57888899986 9999999999556887543
No 23
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=71.63 E-value=18 Score=25.59 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHhCCCCeEEeecCC-----hhHHHHHhcCCCeEEEecCC
Q 043874 15 LPSKRDVIAVYNQNNIRRMRLYDPN-----GEALEALRGSNIEVMLGLPN 59 (308)
Q Consensus 15 ~ps~~~v~~~l~~~~~~~VR~Y~~d-----~~vl~a~~~~gi~V~lGv~~ 59 (308)
.-+++++++..+++|++.|=+=+-+ ......+++.||+++.|+..
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 4468899999999999999886665 34556667789999999854
No 24
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.50 E-value=17 Score=35.28 Aligned_cols=58 Identities=17% Similarity=0.386 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCC-CCC---CCCHHHHHHHHHHHHHHHhh
Q 043874 209 YLSLFDAMLDAVYAALEKTGGGSLDIVISESGWPTAGG-DGA---LANVDNARTYNNNLIQHVKR 269 (308)
Q Consensus 209 y~n~~d~~~da~~~a~~~~~~~~~~v~i~EtGWPs~G~-~~~---vas~~na~~y~~~~~~~~~~ 269 (308)
|.|-|++-+-..-....-.|.+..+|+.+ |||.|. -++ -.|...++-.+..+++.+.+
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~ 186 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLAT 186 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHh
Confidence 55666554433222233446677899988 999999 332 35666667777777777753
No 25
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=68.17 E-value=6.3 Score=33.93 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=26.6
Q ss_pred HHHHHhCCCCeEEeecCChhHHHHHhcCCCeEEEec
Q 043874 22 IAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGL 57 (308)
Q Consensus 22 ~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~lGv 57 (308)
+++|+..|+++||+.+.++.-+.++.+.||+|.=-+
T Consensus 132 aqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 132 AQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp HHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE
T ss_pred HHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEe
Confidence 679999999999999999999999999999986443
No 26
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=67.69 E-value=16 Score=34.21 Aligned_cols=80 Identities=14% Similarity=0.252 Sum_probs=47.8
Q ss_pred hhHHHHHhcCCCeEEEecCCch--------hHHHHhhHHHHHHH---HHhhccccCCCceEEEEeecccccCCCcchHHH
Q 043874 40 GEALEALRGSNIEVMLGLPNDD--------LQRIASNQAEANSW---VQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYL 108 (308)
Q Consensus 40 ~~vl~a~~~~gi~V~lGv~~~~--------~~~~a~~~~~a~~w---v~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~l 108 (308)
++++.++++.|+||++.|.+.. ...+.++.....+. +.+-+..| .+.+|-+-=|.+. .+....+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~----~~DGidiDwE~~~-~~d~~~~ 122 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKY----GYDGVNIDFENVP-PEDREAY 122 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHh----CCCcEEEecccCC-HHHHHHH
Confidence 5788888888999998886432 12233333222222 22223333 3456666556543 2345668
Q ss_pred HHHHHHHHHHHHHcCC
Q 043874 109 VPAMRNIQNAINEAGL 124 (308)
Q Consensus 109 ~~~~~~v~~aL~~~gl 124 (308)
+..|+++|.+|.+.|+
T Consensus 123 ~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 123 TQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHhhhcCc
Confidence 8999999999987664
No 27
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=67.42 E-value=59 Score=30.11 Aligned_cols=141 Identities=13% Similarity=0.177 Sum_probs=71.3
Q ss_pred CCCCHHHHHHHHHhCCCCeEEeecCC-------hhHHHHHh---cCCCeEEEecCCchh---HHHHhhHHHHHHHHHhhc
Q 043874 14 NLPSKRDVIAVYNQNNIRRMRLYDPN-------GEALEALR---GSNIEVMLGLPNDDL---QRIASNQAEANSWVQNNV 80 (308)
Q Consensus 14 ~~ps~~~v~~~l~~~~~~~VR~Y~~d-------~~vl~a~~---~~gi~V~lGv~~~~~---~~~a~~~~~a~~wv~~~v 80 (308)
+.+++.+.++.|+..|++.|-+-.+. ..+.+.+. ..--++.+|-|.=.. .+...+.+++.+-+.+.+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~ 135 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEF 135 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhc
Confidence 46899999999999999999999886 24444433 334589999885210 011223333333233333
Q ss_pred cccCCCceEEEEeecccccCCCcchHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhH
Q 043874 81 RNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDP 160 (308)
Q Consensus 81 ~~~~~~~~I~~I~VGNE~l~~~~~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~ 160 (308)
..--++..+..+-=||+-- + -..-..++..|++.++. ++-|+|.+. +| .+..
T Consensus 136 ~~~~~~~a~vlmGHGt~h~-----a---n~~Y~~l~~~l~~~~~~-~v~vgtvEG-------~P------------~~~~ 187 (262)
T PF06180_consen 136 PKKRKDEAVVLMGHGTPHP-----A---NAAYSALQAMLKKHGYP-NVFVGTVEG-------YP------------SLED 187 (262)
T ss_dssp -TT-TTEEEEEEE---SCH-----H---HHHHHHHHHHHHCCT-T-TEEEEETTS-------SS------------BHHH
T ss_pred cccCCCCEEEEEeCCCCCC-----c---cHHHHHHHHHHHhCCCC-eEEEEEeCC-------CC------------CHHH
Confidence 3221344444444454331 1 22345567788887765 489999973 33 2455
Q ss_pred HHHHHhhcCCCcccccCcccccc
Q 043874 161 LIRFLNENRSPLLFNLYPYFAIA 183 (308)
Q Consensus 161 ~l~fL~~~~d~~~vNiyPff~~~ 183 (308)
++..|.+. .+=-|.+.||.--.
T Consensus 188 vi~~L~~~-g~k~V~L~PlMlVA 209 (262)
T PF06180_consen 188 VIARLKKK-GIKKVHLIPLMLVA 209 (262)
T ss_dssp HHHHHHHH-T-SEEEEEEESSS-
T ss_pred HHHHHHhc-CCCeEEEEeccccc
Confidence 66666543 34468999987543
No 28
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=64.52 E-value=1.5e+02 Score=29.14 Aligned_cols=91 Identities=16% Similarity=0.246 Sum_probs=48.7
Q ss_pred hHHHHHhcCCCeEEEecCCchhHHHH----------------h-----hHHHHHHHHHhhccccCCCceEEEEeeccccc
Q 043874 41 EALEALRGSNIEVMLGLPNDDLQRIA----------------S-----NQAEANSWVQNNVRNFANNVKFKYIAVGNEAK 99 (308)
Q Consensus 41 ~vl~a~~~~gi~V~lGv~~~~~~~~a----------------~-----~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l 99 (308)
.+|+++++.|+..+++.-|+..--+. . --.-+.. |.+++..+ ...|+.|.-=||+-
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~-Vv~~~~~~--GI~f~~IsP~NEP~ 184 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLAD-VVKHYKKW--GINFDYISPFNEPQ 184 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHH-HHHHHHCT--T--EEEEE--S-TT
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHH-HHHHHHhc--CCccceeCCcCCCC
Confidence 48888888999988888765311110 0 0011111 12233322 46899999999998
Q ss_pred CC---C--c----chHHHHHHHHHHHHHHHHcCCCCceeEeeeeec
Q 043874 100 PG---D--N----FAQYLVPAMRNIQNAINEAGLGNQIKVSTAIET 136 (308)
Q Consensus 100 ~~---~--~----~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~ 136 (308)
.. + + ..++....|+.++.+|++.||.. +|...++.
T Consensus 185 ~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t--~I~~~Ea~ 228 (384)
T PF14587_consen 185 WNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLST--KISACEAG 228 (384)
T ss_dssp S-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S---EEEEEEES
T ss_pred CCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCc--eEEecchh
Confidence 64 1 1 57888999999999999999975 45555553
No 29
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=64.45 E-value=13 Score=37.37 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=43.9
Q ss_pred ccEEEeeeccCCCCCC---CC---CCCHHHHHHHHHHHHHHHh-hcCCCCCCCCccEEEEEeecC-CCCCCCCCCCeeee
Q 043874 232 LDIVISESGWPTAGGD---GA---LANVDNARTYNNNLIQHVK-RGSPKRPGRPIETYIFAMFDE-NGKTGPETERHWGL 303 (308)
Q Consensus 232 ~~v~i~EtGWPs~G~~---~~---vas~~na~~y~~~~~~~~~-~gtp~rp~~~~~~~~F~~fDe-~wK~~~~~E~~wGl 303 (308)
+||+|||-|....... |. .-=..--+.+++.+.+.+. .|.+.+ -||.-++.|- .|.. ++..+.|||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~-----GY~~WSl~Dn~EW~~-G~y~~RfGl 442 (478)
T PRK09593 369 KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELL-----GYTTWGCIDLVSAGT-GEMKKRYGF 442 (478)
T ss_pred CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEE-----EEeeccchHhhcccC-CCccCeece
Confidence 4899999999854431 11 0113345666666666664 676544 4777777764 3333 237899999
Q ss_pred cCCC
Q 043874 304 FAPN 307 (308)
Q Consensus 304 f~~d 307 (308)
++.|
T Consensus 443 ~~VD 446 (478)
T PRK09593 443 IYVD 446 (478)
T ss_pred EEEC
Confidence 9876
No 30
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=64.04 E-value=12 Score=37.60 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=43.5
Q ss_pred ccEEEeeeccCCCCC---CCC---CCCHHHHHHHHHHHHHHH-hhcCCCCCCCCccEEEEEeecC-CCCCCCCCCCeeee
Q 043874 232 LDIVISESGWPTAGG---DGA---LANVDNARTYNNNLIQHV-KRGSPKRPGRPIETYIFAMFDE-NGKTGPETERHWGL 303 (308)
Q Consensus 232 ~~v~i~EtGWPs~G~---~~~---vas~~na~~y~~~~~~~~-~~gtp~rp~~~~~~~~F~~fDe-~wK~~~~~E~~wGl 303 (308)
+||+|||-|...... .+. .-=..--+.+++.+.+.+ ..|.+.+ -+|.-++.|- .|.. ++..+.|||
T Consensus 368 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~-----GY~~WSl~Dn~Ew~~-G~y~~RfGl 441 (476)
T PRK09589 368 LPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLM-----GYTPWGCIDLVSAGT-GEMKKRYGF 441 (476)
T ss_pred CCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeE-----EEeeccccccccccC-Cccccceee
Confidence 589999999985432 110 011223455666666666 4676544 4777788874 3333 227899999
Q ss_pred cCCC
Q 043874 304 FAPN 307 (308)
Q Consensus 304 f~~d 307 (308)
++.|
T Consensus 442 v~VD 445 (476)
T PRK09589 442 IYVD 445 (476)
T ss_pred EEEc
Confidence 9876
No 31
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=61.80 E-value=19 Score=31.06 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=42.8
Q ss_pred HHHHHhcC--CCeEEEecCCchhH---HHHhhHHH---HHHHHHhhccccCCCceEEEEeecccccCCCc--chHHHHHH
Q 043874 42 ALEALRGS--NIEVMLGLPNDDLQ---RIASNQAE---ANSWVQNNVRNFANNVKFKYIAVGNEAKPGDN--FAQYLVPA 111 (308)
Q Consensus 42 vl~a~~~~--gi~V~lGv~~~~~~---~~a~~~~~---a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~--~~~~l~~~ 111 (308)
-++.+++. |+||++.+...... .+..+.+. ..+.+.+.+..| .+.+|-+==|.....+ ....++..
T Consensus 54 ~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~----~~DGidiD~E~~~~~~~~~~~~~~~l 129 (210)
T cd00598 54 ALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTY----GFDGVDIDWEYPGAADNSDRENFITL 129 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHc----CCCceEEeeeCCCCcCccHHHHHHHH
Confidence 45556554 99998888753221 12222222 222222333333 3445555434433222 35789999
Q ss_pred HHHHHHHHHHcCC
Q 043874 112 MRNIQNAINEAGL 124 (308)
Q Consensus 112 ~~~v~~aL~~~gl 124 (308)
|+++|++|.+.++
T Consensus 130 l~~lr~~l~~~~~ 142 (210)
T cd00598 130 LRELRSALGAANY 142 (210)
T ss_pred HHHHHHHhcccCc
Confidence 9999999976644
No 32
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=61.24 E-value=21 Score=35.77 Aligned_cols=47 Identities=11% Similarity=0.163 Sum_probs=35.1
Q ss_pred HHHHHHHHHhCCCCeEEe-------ec--C---C-------hhHHHHHhcCCCeEEEecCCchhHH
Q 043874 18 KRDVIAVYNQNNIRRMRL-------YD--P---N-------GEALEALRGSNIEVMLGLPNDDLQR 64 (308)
Q Consensus 18 ~~~v~~~l~~~~~~~VR~-------Y~--~---d-------~~vl~a~~~~gi~V~lGv~~~~~~~ 64 (308)
-+|-+++|+++|++.-|+ +- . + .+++.+|.+.||+-+|.+..-+++.
T Consensus 55 y~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 55 YPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 456688999988777664 31 1 2 3699999999999999998766553
No 33
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=60.38 E-value=12 Score=37.61 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=43.9
Q ss_pred ccEEEeeeccCCCCC---CCC---CCCHHHHHHHHHHHHHHHh-hcCCCCCCCCccEEEEEeecC-CCCCCCCCCCeeee
Q 043874 232 LDIVISESGWPTAGG---DGA---LANVDNARTYNNNLIQHVK-RGSPKRPGRPIETYIFAMFDE-NGKTGPETERHWGL 303 (308)
Q Consensus 232 ~~v~i~EtGWPs~G~---~~~---vas~~na~~y~~~~~~~~~-~gtp~rp~~~~~~~~F~~fDe-~wK~~~~~E~~wGl 303 (308)
+||+|||-|...... .|. .-=.+--+.+++.+.+.+. .|.+.+ -||.-++.|- .|.. ++..+.|||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~-----GY~~WSl~DnfEw~~-G~y~~RfGl 442 (477)
T PRK15014 369 KPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLM-----GYTPWGCIDCVSFTT-GQYSKRYGF 442 (477)
T ss_pred CCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEE-----EEeeccchhhhcccC-CCccCccce
Confidence 589999999986432 121 0122334556666666663 677554 4777777774 3443 337899999
Q ss_pred cCCC
Q 043874 304 FAPN 307 (308)
Q Consensus 304 f~~d 307 (308)
++.|
T Consensus 443 ~~VD 446 (477)
T PRK15014 443 IYVN 446 (477)
T ss_pred EEEC
Confidence 9775
No 34
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=58.24 E-value=1.4e+02 Score=29.57 Aligned_cols=57 Identities=16% Similarity=0.240 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhHHHHHHhhcCCCcccccCcc
Q 043874 104 FAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPY 179 (308)
Q Consensus 104 ~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPf 179 (308)
..++.+.+++.+|++. . .+.+++..-. .+| . +-.+.+...++|+.+ ..+-.+++|+|
T Consensus 270 ~~~~~~~~v~~lr~~~----~--~i~i~~d~Iv-----G~P-g------Et~ed~~~tl~~i~~-l~~~~i~~f~y 326 (440)
T PRK14334 270 RREKYLERIAEIREAL----P--DVVLSTDIIV-----GFP-G------ETEEDFQETLSLYDE-VGYDSAYMFIY 326 (440)
T ss_pred CHHHHHHHHHHHHHhC----C--CcEEEEeEEE-----ECC-C------CCHHHHHHHHHHHHh-cCCCEeeeeEe
Confidence 5677888888887753 2 2445554322 132 1 112345667777754 34556667764
No 35
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=57.40 E-value=19 Score=36.19 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCCeEEe-------ec------CC-------hhHHHHHhcCCCeEEEecCCchhHH
Q 043874 18 KRDVIAVYNQNNIRRMRL-------YD------PN-------GEALEALRGSNIEVMLGLPNDDLQR 64 (308)
Q Consensus 18 ~~~v~~~l~~~~~~~VR~-------Y~------~d-------~~vl~a~~~~gi~V~lGv~~~~~~~ 64 (308)
-++-+++|++.|++..|+ +- .+ .+++.+|.+.||+.+|.+..-+++.
T Consensus 73 y~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 73 YKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred hHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 356688999988877765 31 13 3689999999999999988766553
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=57.25 E-value=75 Score=27.21 Aligned_cols=79 Identities=11% Similarity=0.096 Sum_probs=40.2
Q ss_pred hhHHHHHhcCCCeEEEecCCchh----HHHHhhHHHHHHHHHhhc-cccCCCceEEEEeecccccCCCcchHHHHHHHHH
Q 043874 40 GEALEALRGSNIEVMLGLPNDDL----QRIASNQAEANSWVQNNV-RNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRN 114 (308)
Q Consensus 40 ~~vl~a~~~~gi~V~lGv~~~~~----~~~a~~~~~a~~wv~~~v-~~~~~~~~I~~I~VGNE~l~~~~~~~~l~~~~~~ 114 (308)
..+|+++.+.||||++|++.++. ...+.+.....+ +.+.+ ..|.....+.+--+-.|.=.. .....++.+.
T Consensus 68 ~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~~-v~~el~~~yg~h~sf~GWYip~E~~~~---~~~~~~~~~~ 143 (166)
T PF14488_consen 68 EMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNKQ-VADELWQRYGHHPSFYGWYIPYEIDDY---NWNAPERFAL 143 (166)
T ss_pred HHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHHH-HHHHHHHHHcCCCCCceEEEecccCCc---ccchHHHHHH
Confidence 36888899999999999996521 111111111111 11112 123212356666666666432 2223555556
Q ss_pred HHHHHHHc
Q 043874 115 IQNAINEA 122 (308)
Q Consensus 115 v~~aL~~~ 122 (308)
+.+.|+..
T Consensus 144 l~~~lk~~ 151 (166)
T PF14488_consen 144 LGKYLKQI 151 (166)
T ss_pred HHHHHHHh
Confidence 66666544
No 37
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=56.83 E-value=32 Score=24.81 Aligned_cols=43 Identities=12% Similarity=0.259 Sum_probs=30.6
Q ss_pred hHHHHHHHHHhhccccCCCceEEEEeecccccCCCc----chHHHHHHHHHHHHHHHHc
Q 043874 68 NQAEANSWVQNNVRNFANNVKFKYIAVGNEAKPGDN----FAQYLVPAMRNIQNAINEA 122 (308)
Q Consensus 68 ~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~----~~~~l~~~~~~v~~aL~~~ 122 (308)
..+-...|+++||.- |++.++.++ ....|+|+++..++.++..
T Consensus 9 ~L~iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 9 ALEILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 445678899988753 556666431 4678999999999887643
No 38
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=56.73 E-value=1.2e+02 Score=29.07 Aligned_cols=56 Identities=13% Similarity=0.057 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhHHHHHHhhcCCCcccccCcc
Q 043874 104 FAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPY 179 (308)
Q Consensus 104 ~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPf 179 (308)
....+..+++..++.|++.. . +.+|+|-.... +.. .+ +.. .+++..|+++.|.||.
T Consensus 207 ~~~~~~~~~~~~~~~ir~~~-p-~~~vt~n~~~~-~~~-----------~~-----d~~-~~a~~~D~~~~d~Y~~ 262 (374)
T PF02449_consen 207 QSDRVAEFFRWQADIIREYD-P-DHPVTTNFMGS-WFN-----------GI-----DYF-KWAKYLDVVSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-T-T-EEE-EE-TT---------------SS------HH-HHGGGSSSEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHHhC-C-CceEEeCcccc-ccC-----------cC-----CHH-HHHhhCCcceeccccC
Confidence 36778899999999999886 2 47888764322 110 00 111 1467889999999997
No 39
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=55.18 E-value=19 Score=31.75 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=30.0
Q ss_pred HHHHHhCCCCeEEeecCChhHHHHHhcCCCeEE
Q 043874 22 IAVYNQNNIRRMRLYDPNGEALEALRGSNIEVM 54 (308)
Q Consensus 22 ~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~ 54 (308)
+++|+..|++++|+.+.++.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 779999999999999998877889999999986
No 40
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=55.01 E-value=20 Score=31.50 Aligned_cols=33 Identities=18% Similarity=0.450 Sum_probs=29.7
Q ss_pred HHHHHhCCCCeEEeecCChhHHHHHhcCCCeEE
Q 043874 22 IAVYNQNNIRRMRLYDPNGEALEALRGSNIEVM 54 (308)
Q Consensus 22 ~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~ 54 (308)
+++|+..|++++|+.+.++.-+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 679999999999999988878889999999986
No 41
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=52.09 E-value=33 Score=25.83 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=31.4
Q ss_pred CceEEEEeeccc-ccCC--------Cc-chHHHHHHHHHHHHHHHHcCCCCceeEeeee
Q 043874 86 NVKFKYIAVGNE-AKPG--------DN-FAQYLVPAMRNIQNAINEAGLGNQIKVSTAI 134 (308)
Q Consensus 86 ~~~I~~I~VGNE-~l~~--------~~-~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~ 134 (308)
..+|..-=|+|| .... ++ ....+.+.|+++-+.+++..= ..|||+..
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP--~~pvt~g~ 64 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP--SQPVTSGF 64 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T--TS-EE--B
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC--CCcEEeec
Confidence 478889999999 5521 11 367889999999999987753 47887663
No 42
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=50.54 E-value=39 Score=29.96 Aligned_cols=53 Identities=25% Similarity=0.403 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhh-HHHHHHhhcCCCccccc
Q 043874 109 VPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILD-PLIRFLNENRSPLLFNL 176 (308)
Q Consensus 109 ~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~-~~l~fL~~~~d~~~vNi 176 (308)
-.+++.+..++...|+.+ |++.+....... + .+... ++++.+.+.+=++.+|+
T Consensus 84 ~~~~~~l~~~~~~~g~~G-v~l~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 84 EDAVEELERALQELGFRG-VKLHPDLGGFDP-------------D-DPRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp HHHHHHHHHHHHTTTESE-EEEESSETTCCT-------------T-SGHCHHHHHHHHHHHT-EEEEEE
T ss_pred hhHHHHHHHhccccceee-eEecCCCCcccc-------------c-cHHHHHHHHHHHHhhccceeeec
Confidence 367788888888888876 877654321111 1 12333 88888888887776664
No 43
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=50.37 E-value=48 Score=33.00 Aligned_cols=104 Identities=15% Similarity=0.247 Sum_probs=52.8
Q ss_pred HHHHHHHHhCCCCeEEee--cCC-------------hh---HHHHHhcCCC-----eEEEecCCchhHHHHhhHHHHHHH
Q 043874 19 RDVIAVYNQNNIRRMRLY--DPN-------------GE---ALEALRGSNI-----EVMLGLPNDDLQRIASNQAEANSW 75 (308)
Q Consensus 19 ~~v~~~l~~~~~~~VR~Y--~~d-------------~~---vl~a~~~~gi-----~V~lGv~~~~~~~~a~~~~~a~~w 75 (308)
++.++.|+..|+++|-+= +.+ .. .++.+++.|+ .+|.|++.+..+.+......+.+.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l 231 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIAL 231 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhc
Confidence 466778888787766432 112 12 3333444454 478899987776666555544321
Q ss_pred HHhhcccc----CCCceEEEEeecccccCCCcchHHHHHHHHHHHHHHHHcCCC
Q 043874 76 VQNNVRNF----ANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINEAGLG 125 (308)
Q Consensus 76 v~~~v~~~----~~~~~I~~I~VGNE~l~~~~~~~~l~~~~~~v~~aL~~~gl~ 125 (308)
--++|.-| .|...-..-.+|...+. ...+.+.-++.+...|.++||.
T Consensus 232 ~p~~i~~y~l~~~p~~~~~~~~~~~~~lp---~~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 232 SPDRIAVFGYAHVPSRRKNQRLIDEAALP---DAEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred CCCEEEEeccccccchhhHHhcCCccCCc---CHHHHHHHHHHHHHHHHHCCCE
Confidence 00111111 00000000001221111 3456677888899999999994
No 44
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=49.32 E-value=43 Score=26.62 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCeEEee--cCC---hhHHHHHhcCCCeEEE
Q 043874 19 RDVIAVYNQNNIRRMRLY--DPN---GEALEALRGSNIEVML 55 (308)
Q Consensus 19 ~~v~~~l~~~~~~~VR~Y--~~d---~~vl~a~~~~gi~V~l 55 (308)
+++.+.+++++++.|+++ +.. ..+|.+++..|++|..
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 345667778999999998 343 5799999999998653
No 45
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=48.90 E-value=47 Score=33.59 Aligned_cols=88 Identities=13% Similarity=0.017 Sum_probs=54.8
Q ss_pred HHhhccccCCCceEEEEeecccccCCC-cchHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCc
Q 043874 76 VQNNVRNFANNVKFKYIAVGNEAKPGD-NFAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDY 154 (308)
Q Consensus 76 v~~~v~~~~~~~~I~~I~VGNE~l~~~-~~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~ 154 (308)
+..-|.+|--...|.+-..-||.|.+. .+...++...+...+-++..+-+.-|.|+ +...-|...-|| .+.
T Consensus 126 vedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvG--D~~sp~~~~~py-N~r----- 197 (587)
T COG3934 126 VEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVG--DPASPWPQYAPY-NAR----- 197 (587)
T ss_pred HHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecC--CcCCcccccCCc-ccc-----
Confidence 333445553345577777889987744 47888888888888888877655434444 433323321122 111
Q ss_pred chhhhHHHHHHhhcCCCcccccCcccccc
Q 043874 155 RPILDPLIRFLNENRSPLLFNLYPYFAIA 183 (308)
Q Consensus 155 ~~~~~~~l~fL~~~~d~~~vNiyPff~~~ 183 (308)
.++||=+-|+||+|...
T Consensus 198 ------------~~vDya~~hLY~hyd~s 214 (587)
T COG3934 198 ------------FYVDYAANHLYRHYDTS 214 (587)
T ss_pred ------------eeeccccchhhhhccCC
Confidence 36688899999977654
No 46
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=48.16 E-value=2.1e+02 Score=26.70 Aligned_cols=126 Identities=14% Similarity=0.177 Sum_probs=59.2
Q ss_pred hHHHHHhc--CCCeEE--E--ecCCch-hHHHHhhHHHHHHHHHhhccccCCCceEEEEeecc-cccCC---CcchHHHH
Q 043874 41 EALEALRG--SNIEVM--L--GLPNDD-LQRIASNQAEANSWVQNNVRNFANNVKFKYIAVGN-EAKPG---DNFAQYLV 109 (308)
Q Consensus 41 ~vl~a~~~--~gi~V~--l--Gv~~~~-~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGN-E~l~~---~~~~~~l~ 109 (308)
..+.+++. .++||+ + |=|... ...++++.+.-.+.++ ++..+...-.+.+|-+=- |-... .+....++
T Consensus 55 ~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~-s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~ 133 (318)
T cd02876 55 GWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIK-LLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELI 133 (318)
T ss_pred HHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHH-HHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHH
Confidence 34455554 479988 4 446532 3344444443333332 222221111244443321 11111 12456788
Q ss_pred HHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhHHHHHHhhcCCCcccccCcccc
Q 043874 110 PAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYFA 181 (308)
Q Consensus 110 ~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~ 181 (308)
..|+++|.+|.+.|+. +-++.+-.... .+....+.. --+..|++.+|++.|=.|=|..
T Consensus 134 ~~l~el~~~l~~~~~~--l~~~v~~~~~~-----~~~~~~~~~-------~d~~~l~~~vD~v~lMtYD~~~ 191 (318)
T cd02876 134 QLVIHLGETLHSANLK--LILVIPPPREK-----GNQNGLFTR-------KDFEKLAPHVDGFSLMTYDYSS 191 (318)
T ss_pred HHHHHHHHHHhhcCCE--EEEEEcCcccc-----ccccccccc-------cCHHHHHhhccEEEEEeeccCC
Confidence 9999999999877652 33433211100 000001110 0123466788999888887654
No 47
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=47.56 E-value=23 Score=34.46 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=29.4
Q ss_pred HHHHHhCCCCeEEeecCChhHHHHHhcCCCeEEE
Q 043874 22 IAVYNQNNIRRMRLYDPNGEALEALRGSNIEVML 55 (308)
Q Consensus 22 ~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~l 55 (308)
+++|+..|+++|||. +++.=+.++.+.||+|.=
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 679999999999999 678888889999999873
No 48
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=47.27 E-value=56 Score=31.16 Aligned_cols=62 Identities=10% Similarity=0.228 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhHHHHHHhhcCCCcccccCccccc
Q 043874 104 FAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYFAI 182 (308)
Q Consensus 104 ~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~~ 182 (308)
....++..|+++|++|++.+- ...++.+... +...+...+ + +.-|.+..|++.+-.|-|...
T Consensus 132 d~~~~~~ll~~lr~~l~~~~~--~~~ls~av~~---------~~~~~~~~~-----d-~~~l~~~vD~v~vmtYD~~~~ 193 (362)
T cd02872 132 DKENFVTLLKELREAFEPEAP--RLLLTAAVSA---------GKETIDAAY-----D-IPEISKYLDFINVMTYDFHGS 193 (362)
T ss_pred HHHHHHHHHHHHHHHHHhhCc--CeEEEEEecC---------ChHHHhhcC-----C-HHHHhhhcceEEEecccCCCC
Confidence 456789999999999988731 1234444321 111111100 0 123567789999888887543
No 49
>PRK09936 hypothetical protein; Provisional
Probab=47.06 E-value=1.1e+02 Score=28.88 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=41.5
Q ss_pred eeEeecCCCCC-CCCHHHHHH---HHHhCCCCeEEee-----cCC--------hhHHHHHhcCCCeEEEecCCch
Q 043874 4 IGVCYGMLGNN-LPSKRDVIA---VYNQNNIRRMRLY-----DPN--------GEALEALRGSNIEVMLGLPNDD 61 (308)
Q Consensus 4 ~Gv~Y~~~~~~-~ps~~~v~~---~l~~~~~~~VR~Y-----~~d--------~~vl~a~~~~gi~V~lGv~~~~ 61 (308)
.|+=|-|...+ --++++--+ .++..|++.+=+= +.+ .+.+.++.+.||+|.||++.|.
T Consensus 22 ~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 22 KGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADP 96 (296)
T ss_pred ccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCCh
Confidence 46678888766 467777655 5556788665442 223 4788889999999999999874
No 50
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=46.75 E-value=81 Score=28.37 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=24.7
Q ss_pred HHcCCCCccEEEeeeccCCCCCC-CC---CCCHHHHHHHHHHHHHHHh
Q 043874 225 EKTGGGSLDIVISESGWPTAGGD-GA---LANVDNARTYNNNLIQHVK 268 (308)
Q Consensus 225 ~~~~~~~~~v~i~EtGWPs~G~~-~~---vas~~na~~y~~~~~~~~~ 268 (308)
..++++..+|+.+ |||.|.. ++ ..+...++..+..++..+.
T Consensus 43 ~~~~~~~~~i~Fs---WPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 43 HDLGFPGVVILFS---WPSDGSLLGYFYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred HHhCCCceEEEEE---cCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3456676666665 9999982 21 2344455556666666654
No 51
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=46.54 E-value=28 Score=32.66 Aligned_cols=85 Identities=19% Similarity=0.254 Sum_probs=57.5
Q ss_pred ceEEEEeecccccC----CC--c---chHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCcc----ccccC
Q 043874 87 VKFKYIAVGNEAKP----GD--N---FAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRG----SFKQD 153 (308)
Q Consensus 87 ~~I~~I~VGNE~l~----~~--~---~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~----~f~~~ 153 (308)
..|....||+|..- |. . .+.+|...+.+||+.| | ..+|||-+-.|+-+.. +.|+.| .|+
T Consensus 18 ggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il---G--~~~kitYAADWsEY~~-~~p~dg~gd~~f~-- 89 (299)
T PF13547_consen 18 GGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL---G--PGTKITYAADWSEYFG-YQPADGSGDVYFH-- 89 (299)
T ss_pred CCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh---C--CCceEEEeccCHHhcC-cCCCCCCCccccc--
Confidence 46889999999642 32 1 3678999999999987 3 3479999988887753 555544 444
Q ss_pred cchhhhHHHHHHhhcCCCcccccCccccccCC
Q 043874 154 YRPILDPLIRFLNENRSPLLFNLYPYFAIADN 185 (308)
Q Consensus 154 ~~~~~~~~l~fL~~~~d~~~vNiyPff~~~~~ 185 (308)
|-|+. -..+.|+|+|+-|.=.+...+
T Consensus 90 ----LDpLW--a~~~IDfIGID~Y~PLSDwrd 115 (299)
T PF13547_consen 90 ----LDPLW--ADPNIDFIGIDNYFPLSDWRD 115 (299)
T ss_pred ----Ccccc--cCCcCCEEEeecccccCCCCC
Confidence 22332 124679999999875554443
No 52
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=44.76 E-value=35 Score=29.95 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=29.6
Q ss_pred HHHHHhCCCCeEEeecCChhHHHHHhcCCCeEE
Q 043874 22 IAVYNQNNIRRMRLYDPNGEALEALRGSNIEVM 54 (308)
Q Consensus 22 ~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~ 54 (308)
+++|+..|++.+|+.+..+.-+.++.+.|++|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 679999999999999988777889999999987
No 53
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=44.72 E-value=2.8e+02 Score=27.26 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=33.1
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhHHHHHHhhcCCCcccccCccc
Q 043874 104 FAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYF 180 (308)
Q Consensus 104 ~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPff 180 (308)
...++..+++.+|+++ + .+.++|..-. .|| . +-.+.+...++|+.+. .+-.+|+++|-
T Consensus 257 ~~~~~~~~i~~lr~~~-----p-gi~i~~d~Iv-----GfP-G------ET~edf~~tl~fi~~~-~~~~~~v~~ys 314 (418)
T PRK14336 257 TNQQYRELVERLKTAM-----P-DISLQTDLIV-----GFP-S------ETEEQFNQSYKLMADI-GYDAIHVAAYS 314 (418)
T ss_pred CHHHHHHHHHHHHhhC-----C-CCEEEEEEEE-----ECC-C------CCHHHHHHHHHHHHhc-CCCEEEeeecC
Confidence 6778888888888863 2 2556555422 233 1 1124566778887653 34445666543
No 54
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=44.34 E-value=81 Score=25.74 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=36.2
Q ss_pred HHHHHHHhCCCCeEEeecCChhHHHHHhcCCCeEEEecC
Q 043874 20 DVIAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGLP 58 (308)
Q Consensus 20 ~v~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~lGv~ 58 (308)
.+.++|+.+|++.|=+...-+..+.+|++.||+|+.+-.
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578999999999999888889999999999999999988
No 55
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=44.16 E-value=29 Score=33.84 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=30.5
Q ss_pred HHHHHhCCCCeEEeecCChhHHHHHhcCCCeEEEec
Q 043874 22 IAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGL 57 (308)
Q Consensus 22 ~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~lGv 57 (308)
+++|+..|+++||+.. ++.-+.++.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 7799999999999998 8888888999999997333
No 56
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=43.86 E-value=59 Score=26.81 Aligned_cols=44 Identities=14% Similarity=0.285 Sum_probs=34.5
Q ss_pred CHHHHHHHHHhCCCCeEEeecC---------------------C--hhHHHHHhcCCCeEEEecCCc
Q 043874 17 SKRDVIAVYNQNNIRRMRLYDP---------------------N--GEALEALRGSNIEVMLGLPND 60 (308)
Q Consensus 17 s~~~v~~~l~~~~~~~VR~Y~~---------------------d--~~vl~a~~~~gi~V~lGv~~~ 60 (308)
+++++++.||+.+++.|-+|.- | .++++|+.+.||+|++=+...
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4688999999988888888743 1 368888999999988777654
No 57
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=42.83 E-value=1.8e+02 Score=28.44 Aligned_cols=135 Identities=11% Similarity=0.162 Sum_probs=66.7
Q ss_pred CCCHHHHHHHH---HhCCCCeEEeecCC--------------hhHHHHHhcC-CC-eEEEecCCchhHHHHhhHHHHHHH
Q 043874 15 LPSKRDVIAVY---NQNNIRRMRLYDPN--------------GEALEALRGS-NI-EVMLGLPNDDLQRIASNQAEANSW 75 (308)
Q Consensus 15 ~ps~~~v~~~l---~~~~~~~VR~Y~~d--------------~~vl~a~~~~-gi-~V~lGv~~~~~~~~a~~~~~a~~w 75 (308)
.-++++|++.+ ...|++.|.+.+.+ ..+++++... ++ .+-++--. ...+..+ ..+.
T Consensus 166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--p~~~~~e---ll~~ 240 (414)
T TIGR01579 166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSID--PEDIDEE---LLEA 240 (414)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCC--hhhCCHH---HHHH
Confidence 45678887644 35689999875422 2466666543 44 34444211 1112211 1122
Q ss_pred HHhhccccCCCceEEEEeecccccC--------CCcchHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCc
Q 043874 76 VQNNVRNFANNVKFKYIAVGNEAKP--------GDNFAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSR 147 (308)
Q Consensus 76 v~~~v~~~~~~~~I~~I~VGNE~l~--------~~~~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~ 147 (308)
++++ + .....|.+|=|-.. ++.+..+...+++.+|+.. .| +.+++..-. .+| .
T Consensus 241 m~~~-----~-~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~g----i~i~~~~Iv-----G~P-g- 301 (414)
T TIGR01579 241 IASE-----K-RLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--PD----YAFGTDIIV-----GFP-G- 301 (414)
T ss_pred HHhc-----C-ccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--CC----CeeeeeEEE-----ECC-C-
Confidence 2221 0 01234555555432 2235677888888887742 12 455554322 233 1
Q ss_pred cccccCcchhhhHHHHHHhhcCCCcccccCcc
Q 043874 148 GSFKQDYRPILDPLIRFLNENRSPLLFNLYPY 179 (308)
Q Consensus 148 ~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPf 179 (308)
+-.+.+...++|+.+ ..+-.+++|||
T Consensus 302 -----ET~ed~~~tl~~i~~-~~~~~~~~~~~ 327 (414)
T TIGR01579 302 -----ESEEDFQETLRMVKE-IEFSHLHIFPY 327 (414)
T ss_pred -----CCHHHHHHHHHHHHh-CCCCEEEeeec
Confidence 112456677888765 34555677765
No 58
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=42.06 E-value=3.9e+02 Score=27.21 Aligned_cols=135 Identities=15% Similarity=0.215 Sum_probs=66.1
Q ss_pred CCCHHHHHH---HHHhCCCCeEEeecCC---------------hhHHHHHhcCCCe-EEEecCCchhHHHHhhHHHHHHH
Q 043874 15 LPSKRDVIA---VYNQNNIRRMRLYDPN---------------GEALEALRGSNIE-VMLGLPNDDLQRIASNQAEANSW 75 (308)
Q Consensus 15 ~ps~~~v~~---~l~~~~~~~VR~Y~~d---------------~~vl~a~~~~gi~-V~lGv~~~~~~~~a~~~~~a~~w 75 (308)
.-++++|++ .|...|+..|.+.+-+ ..+++++.+.++. +-++..+ ...+..+.-.
T Consensus 240 sr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~--P~~i~deli~---- 313 (509)
T PRK14327 240 SRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSH--PRDFDDHLIE---- 313 (509)
T ss_pred eCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecC--cccCCHHHHH----
Confidence 345788865 3445688888886543 1456666655542 3222211 1112111111
Q ss_pred HHhhccccCCCceEEEEeecccccC--------CCcchHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCc
Q 043874 76 VQNNVRNFANNVKFKYIAVGNEAKP--------GDNFAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSR 147 (308)
Q Consensus 76 v~~~v~~~~~~~~I~~I~VGNE~l~--------~~~~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~ 147 (308)
.+... + ..+..+.+|=|-.. ++-+.++.+.+++.+|+++ . .+.++|..-. .||
T Consensus 314 ---~m~~~-g-~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~-----p-~i~i~tdiIv-----GfP--- 374 (509)
T PRK14327 314 ---VLAKG-G-NLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAI-----P-NVALTTDIIV-----GFP--- 374 (509)
T ss_pred ---HHHhc-C-CccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-----C-CcEEeeeEEE-----eCC---
Confidence 11111 1 22446666655432 2336788888888888863 2 2566555322 233
Q ss_pred cccccCcchhhhHHHHHHhhcCCCcccccCcc
Q 043874 148 GSFKQDYRPILDPLIRFLNENRSPLLFNLYPY 179 (308)
Q Consensus 148 ~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPf 179 (308)
.+-.+.+...++|+.+ ..+-.+++|+|
T Consensus 375 ----gET~edf~~Tl~~v~~-l~~d~~~~f~y 401 (509)
T PRK14327 375 ----NETDEQFEETLSLYRE-VGFDHAYTFIY 401 (509)
T ss_pred ----CCCHHHHHHHHHHHHH-cCCCeEEEeee
Confidence 1112345666777654 33344555554
No 59
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.30 E-value=59 Score=29.12 Aligned_cols=63 Identities=16% Similarity=0.328 Sum_probs=41.5
Q ss_pred CeEEeecCC-----hhHHHHHhcCCCeEEEecCCchhHHHHhhHHHHHHHHHhhccccCCCceEEEEeeccccc
Q 043874 31 RRMRLYDPN-----GEALEALRGSNIEVMLGLPNDDLQRIASNQAEANSWVQNNVRNFANNVKFKYIAVGNEAK 99 (308)
Q Consensus 31 ~~VR~Y~~d-----~~vl~a~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l 99 (308)
-.++||++- ..+..+....-+.++|..-.....++ +....|+ ++|..+.+ ..+..+.|||-.=
T Consensus 61 i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf----eni~~W~-~~I~e~a~-~~v~~~LvGNK~D 128 (207)
T KOG0078|consen 61 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF----ENIRNWI-KNIDEHAS-DDVVKILVGNKCD 128 (207)
T ss_pred EEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH----HHHHHHH-HHHHhhCC-CCCcEEEeecccc
Confidence 356777775 46777777666777777766555444 3344575 56667654 4688999999763
No 60
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=40.99 E-value=56 Score=26.00 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCCeEEee--cCC---hhHHHHHhcCCCeEEE
Q 043874 20 DVIAVYNQNNIRRMRLY--DPN---GEALEALRGSNIEVML 55 (308)
Q Consensus 20 ~v~~~l~~~~~~~VR~Y--~~d---~~vl~a~~~~gi~V~l 55 (308)
.+.+.+++.+++.|+++ +.. ..++++++.+|++|..
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34566777899999988 433 5799999999998754
No 61
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=40.77 E-value=3.9e+02 Score=26.79 Aligned_cols=175 Identities=16% Similarity=0.198 Sum_probs=77.9
Q ss_pred EeecccccCCC----cchHHHHHHHHHHHHHHHHcCCCCceeEeeee-eccccccccCCCccccccCcchhhhHHHHHHh
Q 043874 92 IAVGNEAKPGD----NFAQYLVPAMRNIQNAINEAGLGNQIKVSTAI-ETGALGESFPPSRGSFKQDYRPILDPLIRFLN 166 (308)
Q Consensus 92 I~VGNE~l~~~----~~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~-~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~ 166 (308)
.=|=||+=... ....+-....+.+..+||+.. ..++|+-+- .+.. ..-+...++|+.
T Consensus 159 fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGGp~~~~~~----------------~~~~~~~l~~~~ 220 (486)
T PF01229_consen 159 FEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGGPAFAWAY----------------DEWCEDFLEFCK 220 (486)
T ss_dssp EEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEEEEEETT-----------------THHHHHHHHHHH
T ss_pred EEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccCccccccH----------------HHHHHHHHHHHh
Confidence 34688853321 245567778888888888774 348888771 1110 123455566655
Q ss_pred h---cCCCcccccCccccccCCCccccccccccCCcceecCCCcchhhHHHHHHHHHHHHHHHcCCCCccEEEeeeccCC
Q 043874 167 E---NRSPLLFNLYPYFAIADNRQISLDYALFGSQQTVVSDGSLSYLSLFDAMLDAVYAALEKTGGGSLDIVISESGWPT 243 (308)
Q Consensus 167 ~---~~d~~~vNiyPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~~~~~~~v~i~EtGWPs 243 (308)
+ ..|||..|.||.-..... .-.. .... .....+++. +.-+...+...+.+++++.++| |.+
T Consensus 221 ~~~~~~DfiS~H~y~~~~~~~~---~~~~------~~~~----~~~~~~~~~-~~~~~~~~~~e~~p~~~~~~tE--~n~ 284 (486)
T PF01229_consen 221 GNNCPLDFISFHSYGTDSAEDI---NENM------YERI----EDSRRLFPE-LKETRPIINDEADPNLPLYITE--WNA 284 (486)
T ss_dssp HCT---SEEEEEEE-BESESE----SS-E------EEEB------HHHHHHH-HHHHHHHHHTSSSTT--EEEEE--EES
T ss_pred cCCCCCCEEEEEeccccccccc---chhH------Hhhh----hhHHHHHHH-HHHHHHHHhhccCCCCceeecc--ccc
Confidence 3 458889999985322110 0000 0000 011122222 2222233445577889999999 877
Q ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCccEEE---EE-eecCCCCCCCCCCCeeeecCCCC
Q 043874 244 AGGDG--ALANVDNARTYNNNLIQHVKRGSPKRPGRPIETYI---FA-MFDENGKTGPETERHWGLFAPNR 308 (308)
Q Consensus 244 ~G~~~--~vas~~na~~y~~~~~~~~~~gtp~rp~~~~~~~~---F~-~fDe~wK~~~~~E~~wGlf~~d~ 308 (308)
.-... .--|.-+|+-..+++++.... .++.|- |+ .|.|.-.+...+-.-|||++.+|
T Consensus 285 ~~~~~~~~~dt~~~aA~i~k~lL~~~~~--------~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~g 347 (486)
T PF01229_consen 285 SISPRNPQHDTCFKAAYIAKNLLSNDGA--------FLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKLG 347 (486)
T ss_dssp -SSTT-GGGGSHHHHHHHHH-HHHHGGG--------T-SEEEES-SBS---TTSS-SSSSSS-S-SEECCC
T ss_pred ccCCCcchhccccchhhHHHHHHHhhhh--------hhhhhhccchhhhhhccCCCCCceecchhhhhccC
Confidence 65521 013445555555556665420 123322 21 23333222223556688876553
No 62
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=39.83 E-value=71 Score=25.83 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCeEEee--c--------CC---hhHHHHHhcCCCeEEE
Q 043874 19 RDVIAVYNQNNIRRMRLY--D--------PN---GEALEALRGSNIEVML 55 (308)
Q Consensus 19 ~~v~~~l~~~~~~~VR~Y--~--------~d---~~vl~a~~~~gi~V~l 55 (308)
+++.+.++++|++.|+++ + .. +..|++++..||+|..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 445667778899988887 4 33 5799999999998753
No 63
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=39.56 E-value=42 Score=32.93 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=32.3
Q ss_pred HHHHHhCCCCeEEeecCChhHHHHHhcCCCeEEEecC
Q 043874 22 IAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGLP 58 (308)
Q Consensus 22 ~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~lGv~ 58 (308)
+++|+..|+++||+.+.++.-+.++.+.||+|.==++
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6799999999999999999888899999999974443
No 64
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=38.62 E-value=61 Score=29.31 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=42.2
Q ss_pred hHHHHHhcCCCeEEEecCCchh---HHHHhhHHHHHHHH---HhhccccCCCceEEEEeecccccCCCcchHHHHHHHHH
Q 043874 41 EALEALRGSNIEVMLGLPNDDL---QRIASNQAEANSWV---QNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRN 114 (308)
Q Consensus 41 ~vl~a~~~~gi~V~lGv~~~~~---~~~a~~~~~a~~wv---~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~l~~~~~~ 114 (308)
..+++++..|+||++.|..... ..+..+.....+++ .+.+..| .+.+|-+==|-... ....+...+++
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv~~~~~~----~~DGIdiDwE~~~~--~~~~~~~fv~~ 123 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKIINYVVSY----NLDGIDVDLEGPDV--TFGDYLVFIRA 123 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHHHHHHHh----CCCceeEEeeccCc--cHhHHHHHHHH
Confidence 4566777789999987754321 12222332222222 2223333 24455444444321 13567788999
Q ss_pred HHHHHHHcCC
Q 043874 115 IQNAINEAGL 124 (308)
Q Consensus 115 v~~aL~~~gl 124 (308)
+|.+|++.|+
T Consensus 124 Lr~~l~~~~~ 133 (253)
T cd06545 124 LYAALKKEGK 133 (253)
T ss_pred HHHHHhhcCc
Confidence 9999987654
No 65
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=38.52 E-value=45 Score=32.92 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=30.4
Q ss_pred HHHHHhCCCCeEEeecCChhHHHHHhcCCCeEE
Q 043874 22 IAVYNQNNIRRMRLYDPNGEALEALRGSNIEVM 54 (308)
Q Consensus 22 ~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~ 54 (308)
+++|+..|+++||+.+.++.-+.++.+.||+|.
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~ 371 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVT 371 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 679999999999999999888889999999997
No 66
>PRK08815 GTP cyclohydrolase; Provisional
Probab=38.40 E-value=45 Score=32.62 Aligned_cols=36 Identities=33% Similarity=0.397 Sum_probs=31.2
Q ss_pred HHHHHhCCCCeEEeecCChhHHHHHhcCCCeEEEec
Q 043874 22 IAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGL 57 (308)
Q Consensus 22 ~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~lGv 57 (308)
+++|+..|+++||+.+.++.=+.++.+.||+|.==+
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~v 340 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRI 340 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 679999999999999998888889999999987333
No 67
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=38.23 E-value=1.6e+02 Score=21.72 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCCeEEeecCChhHHHHHhcCCCeEEEecC
Q 043874 18 KRDVIAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGLP 58 (308)
Q Consensus 18 ~~~v~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~lGv~ 58 (308)
...++++|..++++.|=.-...+.....|...||+|+.+..
T Consensus 42 ~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~~~ 82 (94)
T PF02579_consen 42 GDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQGAG 82 (94)
T ss_dssp STHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEESTS
T ss_pred chhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEcCC
Confidence 45678888889999888777788999999999999999933
No 68
>CHL00041 rps11 ribosomal protein S11
Probab=37.65 E-value=84 Score=25.35 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCCeEEee--cCC---hhHHHHHhcCCCeEE
Q 043874 20 DVIAVYNQNNIRRMRLY--DPN---GEALEALRGSNIEVM 54 (308)
Q Consensus 20 ~v~~~l~~~~~~~VR~Y--~~d---~~vl~a~~~~gi~V~ 54 (308)
.+.+.+++.|++.|+++ +.. ..++.+++..|++|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 34566777899988888 333 579999999999875
No 69
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=37.28 E-value=1.1e+02 Score=28.59 Aligned_cols=121 Identities=12% Similarity=0.234 Sum_probs=59.7
Q ss_pred HHHHhc--CCCeEEEecCC--c--hhHHHHhhHHHHHH---HHHhhccccCCCceEEEEeecccccCCC-cchHHHHHHH
Q 043874 43 LEALRG--SNIEVMLGLPN--D--DLQRIASNQAEANS---WVQNNVRNFANNVKFKYIAVGNEAKPGD-NFAQYLVPAM 112 (308)
Q Consensus 43 l~a~~~--~gi~V~lGv~~--~--~~~~~a~~~~~a~~---wv~~~v~~~~~~~~I~~I~VGNE~l~~~-~~~~~l~~~~ 112 (308)
+.++++ .++||++.|-. . ....+..+.+...+ -+.+-+..| .+.+|-+==|..... +....++..|
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~~i~~~~~~~----~~DGidiDwE~~~~~~~d~~~~~~ll 132 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFIDSIVSFLKKY----GFDGIDIDWEYPGARGDDRENYTALL 132 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHHHHHHHHHHc----CCCeEEECCcCCCCCccHHHHHHHHH
Confidence 445554 48999887754 2 12223332221111 122223333 355666644444321 2345788899
Q ss_pred HHHHHHHHHcCC-CCceeEeeeeeccccccccCCCccccccCcchhhhHHHHHHhhcCCCcccccCcccc
Q 043874 113 RNIQNAINEAGL-GNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYFA 181 (308)
Q Consensus 113 ~~v~~aL~~~gl-~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~ 181 (308)
+++|+.|.+.+. .....++.+.. |+..... ...+.+..|++.+|++.|-.|=|..
T Consensus 133 ~~lr~~l~~~~~~~~~~~lsi~v~---------~~~~~~~-----~~~~~~~~l~~~vD~v~vm~YD~~~ 188 (334)
T smart00636 133 KELREALDKEGAEGKGYLLTIAVP---------AGPDKID-----KGYGDLPAIAKYLDFINLMTYDFHG 188 (334)
T ss_pred HHHHHHHHHhcccCCceEEEEEec---------CChHHHH-----hhhhhHHHHHhhCcEEEEeeeccCC
Confidence 999999986511 01133444432 1111110 0011134577888999887777654
No 70
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=37.18 E-value=47 Score=34.12 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=32.0
Q ss_pred HHHHHhCCCCeEEeecCChhHHHHHhcCCCeEEEec
Q 043874 22 IAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGL 57 (308)
Q Consensus 22 ~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~lGv 57 (308)
+++|+..|+++||+...++.=+.++.+.||+|.==+
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rv 378 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRV 378 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 779999999999999999999999999999987333
No 71
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=37.07 E-value=47 Score=33.26 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=30.5
Q ss_pred HHHHHhCCCCeEEeecCChhHHHHHhcCCCeEE
Q 043874 22 IAVYNQNNIRRMRLYDPNGEALEALRGSNIEVM 54 (308)
Q Consensus 22 ~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~ 54 (308)
+++|+..|+++||+.+.++.-+.++.+.||+|.
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVv 405 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVV 405 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEE
Confidence 679999999999999989988889999999987
No 72
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=35.14 E-value=99 Score=25.68 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCCeEEee--c--------CC---hhHHHHHhcCCCeEEE
Q 043874 19 RDVIAVYNQNNIRRMRLY--D--------PN---GEALEALRGSNIEVML 55 (308)
Q Consensus 19 ~~v~~~l~~~~~~~VR~Y--~--------~d---~~vl~a~~~~gi~V~l 55 (308)
+++.+.++.+|++.|+++ + .. +.+|.+++..||+|..
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 445667778999998888 4 33 4799999999999753
No 73
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=34.72 E-value=1.7e+02 Score=26.32 Aligned_cols=69 Identities=22% Similarity=0.343 Sum_probs=47.0
Q ss_pred CHHHHHHHHHhCCCCeEEeecCC--------hhHHHHHh-cCCCeEEEecCCchhHHHHhhHHHHHHHHHhhccccCCCc
Q 043874 17 SKRDVIAVYNQNNIRRMRLYDPN--------GEALEALR-GSNIEVMLGLPNDDLQRIASNQAEANSWVQNNVRNFANNV 87 (308)
Q Consensus 17 s~~~v~~~l~~~~~~~VR~Y~~d--------~~vl~a~~-~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~ 87 (308)
.|.++++.+++.|++.+=+.|.| ..++..+. ..+++|++|--....+. +..++. .
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~~ed-------v~~~l~---------~ 99 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRSLEN-------AQEWLK---------R 99 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCCHHH-------HHHHHH---------c
Confidence 68889999999999999998886 24666655 46888888876554332 222221 1
Q ss_pred eEEEEeecccccCC
Q 043874 88 KFKYIAVGNEAKPG 101 (308)
Q Consensus 88 ~I~~I~VGNE~l~~ 101 (308)
-...|++|.|.+.+
T Consensus 100 Ga~~viigt~~~~~ 113 (233)
T cd04723 100 GASRVIVGTETLPS 113 (233)
T ss_pred CCCeEEEcceeccc
Confidence 13457899999865
No 74
>PRK05309 30S ribosomal protein S11; Validated
Probab=34.65 E-value=99 Score=25.43 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCCeEEee--cCC---hhHHHHHhcCCCeEE
Q 043874 20 DVIAVYNQNNIRRMRLY--DPN---GEALEALRGSNIEVM 54 (308)
Q Consensus 20 ~v~~~l~~~~~~~VR~Y--~~d---~~vl~a~~~~gi~V~ 54 (308)
.+.+.++++|++.|+++ +.. ..+|.+|...|++|.
T Consensus 68 ~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 68 DAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 45567778899999999 333 579999998898865
No 75
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=34.59 E-value=2.2e+02 Score=26.89 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=9.8
Q ss_pred hhHHHHHhcCCCeEEEecC
Q 043874 40 GEALEALRGSNIEVMLGLP 58 (308)
Q Consensus 40 ~~vl~a~~~~gi~V~lGv~ 58 (308)
+..++.++++|..+.+++-
T Consensus 187 ~ell~~L~~~g~~v~i~l~ 205 (321)
T TIGR03822 187 PALIAALKTSGKTVYVALH 205 (321)
T ss_pred HHHHHHHHHcCCcEEEEec
Confidence 3455555555555555544
No 76
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=34.36 E-value=86 Score=30.01 Aligned_cols=76 Identities=21% Similarity=0.226 Sum_probs=51.4
Q ss_pred hhHHHHHhcCC-CeEEEecCCchhHHHHhhHHHHHHHHHhhccccCCCceEEEEeecccccCCCcchHHHHHHHHHHHHH
Q 043874 40 GEALEALRGSN-IEVMLGLPNDDLQRIASNQAEANSWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNA 118 (308)
Q Consensus 40 ~~vl~a~~~~g-i~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~l~~~~~~v~~a 118 (308)
..||+++.+.| +++ +|=.-.+ . -.++.|.+|+...+.+++ +.|.+|+--|.-...+ +-++
T Consensus 175 m~VLkp~idsGkik~-~Ge~~~d--~--W~ps~Aq~~men~lta~~--~~vdaVvA~nDgtagG------------aI~a 235 (341)
T COG4213 175 MKVLKPLIDSGKIKV-VGEQWTD--G--WLPSNAQQIMENLLTANY--NDIDAVVAPNDGTAGG------------AIAA 235 (341)
T ss_pred HHHHHHHhhCCceEE-eeecccc--c--cCHHHHHHHHHHHHhccc--CceeEEEcCCCchhHH------------HHHH
Confidence 36999998887 555 7754222 2 345667788888888874 4588888877744322 2256
Q ss_pred HHHcCCCCceeEeeee
Q 043874 119 INEAGLGNQIKVSTAI 134 (308)
Q Consensus 119 L~~~gl~~~v~Vst~~ 134 (308)
|+..||.+++|||=-+
T Consensus 236 L~a~Gl~g~vpVsGQD 251 (341)
T COG4213 236 LKAQGLAGKVPVSGQD 251 (341)
T ss_pred HHhcccCCCCcccCcc
Confidence 7888999889976544
No 77
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=34.09 E-value=3.7e+02 Score=25.67 Aligned_cols=56 Identities=16% Similarity=0.094 Sum_probs=36.7
Q ss_pred eeeEeecCCCCCCCCHHHHHHHHHhCCCCeEEeecCChhHHHHHhcCCCeEEEecCC
Q 043874 3 QIGVCYGMLGNNLPSKRDVIAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGLPN 59 (308)
Q Consensus 3 ~~Gv~Y~~~~~~~ps~~~v~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~lGv~~ 59 (308)
.+|||.-....+ |..++.++.+...++..|=+..-++...+.+++.|++|+.-|+.
T Consensus 57 PfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s 112 (320)
T cd04743 57 PWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS 112 (320)
T ss_pred CeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC
Confidence 467776443322 33455666666666777765544555578888899999988873
No 78
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=33.74 E-value=2.5e+02 Score=22.45 Aligned_cols=111 Identities=20% Similarity=0.201 Sum_probs=56.5
Q ss_pred HHHHhCCCCeEEeecCC----------hhHHHHHhcCCCeEEEecCCchhHHHHhhHHHHHHHHHhhccccCCCceEEEE
Q 043874 23 AVYNQNNIRRMRLYDPN----------GEALEALRGSNIEVMLGLPNDDLQRIASNQAEANSWVQNNVRNFANNVKFKYI 92 (308)
Q Consensus 23 ~~l~~~~~~~VR~Y~~d----------~~vl~a~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I 92 (308)
+-|.++|.++|-+-... .....++++.|++...-.......... .......|+++. .| ++|
T Consensus 2 ~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----~p----dai 72 (160)
T PF13377_consen 2 DYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSED-AREAQLLWLRRL----RP----DAI 72 (160)
T ss_dssp HHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHH-HHHHHHHHHHTC----SS----SEE
T ss_pred hHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchh-HHHHHHHHHhcC----CC----cEE
Confidence 45667788888887633 135667778898744333221111111 111222366433 23 378
Q ss_pred eecccccCCCcchHHHHHHHHHHHHHHHHcCC--CCceeEeeeeeccccccccCCCccccccCcc
Q 043874 93 AVGNEAKPGDNFAQYLVPAMRNIQNAINEAGL--GNQIKVSTAIETGALGESFPPSRGSFKQDYR 155 (308)
Q Consensus 93 ~VGNE~l~~~~~~~~l~~~~~~v~~aL~~~gl--~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~ 155 (308)
+++|+.+. . .+..+|.+.|+ +.++.|-+-+...... ...|....+..+..
T Consensus 73 i~~~~~~a-----~-------~~~~~l~~~g~~vP~di~vv~~~~~~~~~-~~~p~it~i~~~~~ 124 (160)
T PF13377_consen 73 ICSNDRLA-----L-------GVLRALRELGIRVPQDISVVSFDDSPLLE-FFSPPITTIDQDPR 124 (160)
T ss_dssp EESSHHHH-----H-------HHHHHHHHTTSCTTTTSEEEEESSSGHHH-CSSSTSEEEEE-HH
T ss_pred EEcCHHHH-----H-------HHHHHHHHcCCcccccccEEEecCcHHHH-HHcCCCceecCCHH
Confidence 88877642 2 23345555666 4567777766544432 23345555555443
No 79
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=33.18 E-value=3.4e+02 Score=23.91 Aligned_cols=98 Identities=15% Similarity=0.301 Sum_probs=58.6
Q ss_pred CHHHHHHHHHhCCCCeEEee--cCC--hhHHHHHhcCCCeEEEecCCchhHHHHhhHHHHHHHHHhhccccCCC-ceEEE
Q 043874 17 SKRDVIAVYNQNNIRRMRLY--DPN--GEALEALRGSNIEVMLGLPNDDLQRIASNQAEANSWVQNNVRNFANN-VKFKY 91 (308)
Q Consensus 17 s~~~v~~~l~~~~~~~VR~Y--~~d--~~vl~a~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~-~~I~~ 91 (308)
.|++.++.++..|.+.|=+- +++ ..+++.+++.|+++-|.++.... + +.+.++.+. +.|..
T Consensus 68 ~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~--~------------~~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETP--V------------EELEPYLDQVDMVLV 133 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---G------------GGGTTTGCCSSEEEE
T ss_pred cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCC--c------------hHHHHHhhhcCEEEE
Confidence 46667777776666655332 222 36888899999999888875321 1 113333322 44544
Q ss_pred EeecccccCCCc-chHHHHHHHHHHHHHHHHcCCCCceeE
Q 043874 92 IAVGNEAKPGDN-FAQYLVPAMRNIQNAINEAGLGNQIKV 130 (308)
Q Consensus 92 I~VGNE~l~~~~-~~~~l~~~~~~v~~aL~~~gl~~~v~V 130 (308)
.+| |+=+.|+ ..+..++.|+.+|+.+.+.|++-.|-|
T Consensus 134 MsV--~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~v 171 (201)
T PF00834_consen 134 MSV--EPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEV 171 (201)
T ss_dssp ESS---TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEE
T ss_pred EEe--cCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 444 3333444 678899999999999999887543433
No 80
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.27 E-value=4.3e+02 Score=24.80 Aligned_cols=71 Identities=11% Similarity=0.016 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCC--Ccccc--ccCcchhhhHHHHHHhhcCCCcccccCcc
Q 043874 104 FAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPP--SRGSF--KQDYRPILDPLIRFLNENRSPLLFNLYPY 179 (308)
Q Consensus 104 ~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pp--s~~~f--~~~~~~~~~~~l~fL~~~~d~~~vNiyPf 179 (308)
+.+++...+++.|+. +||+..-..-.-|.....+ ..+.| .++.-|..+.+++.|.+.+=-++++++|+
T Consensus 22 ~~~~v~~~~~~~~~~--------~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~ 93 (317)
T cd06598 22 NWQEVDDTIKTLREK--------DFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPF 93 (317)
T ss_pred CHHHHHHHHHHHHHh--------CCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCc
Confidence 467777777777764 4677665432223211100 11233 22222456789999988888899999998
Q ss_pred ccc
Q 043874 180 FAI 182 (308)
Q Consensus 180 f~~ 182 (308)
...
T Consensus 94 v~~ 96 (317)
T cd06598 94 VLK 96 (317)
T ss_pred ccC
Confidence 764
No 81
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.27 E-value=4.8e+02 Score=25.68 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhHHHHHHhhcCCCcccccCccc
Q 043874 104 FAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYF 180 (308)
Q Consensus 104 ~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPff 180 (308)
+.++...+++.+|+.+ . .+.+++..-. .+|= +-.+.+...++|+.+. .+-.+++++|-
T Consensus 280 ~~~~~~~~i~~lr~~~-----~-~i~i~~d~Iv-----G~Pg-------ET~ed~~~tl~~i~~l-~~~~~~~~~~s 337 (439)
T PRK14328 280 TREYYLELVEKIKSNI-----P-DVAITTDIIV-----GFPG-------ETEEDFEETLDLVKEV-RYDSAFTFIYS 337 (439)
T ss_pred CHHHHHHHHHHHHHhC-----C-CCEEEEEEEE-----ECCC-------CCHHHHHHHHHHHHhc-CCCcccceEec
Confidence 6777888888887753 1 2555544322 2331 1123556677777543 45566777653
No 82
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=31.98 E-value=4.5e+02 Score=25.78 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhHHHHHHhhcCCCcccccCccccc
Q 043874 104 FAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYFAI 182 (308)
Q Consensus 104 ~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~~ 182 (308)
....++..|+++|++|.+.++. +.++.+-... +...| + +..|++.+|++.+-.|=|+..
T Consensus 167 d~~nf~~Ll~elr~~l~~~~~~--ls~av~~~~~--------~~~~~---------d-~~~l~~~vD~inlMtYD~~g~ 225 (413)
T cd02873 167 HKEQFTALVRELKNALRPDGLL--LTLTVLPHVN--------STWYF---------D-VPAIANNVDFVNLATFDFLTP 225 (413)
T ss_pred HHHHHHHHHHHHHHHhcccCcE--EEEEecCCch--------hcccc---------C-HHHHhhcCCEEEEEEecccCC
Confidence 4566888999999999876641 3232211000 00000 1 234667889998888877643
No 83
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=31.96 E-value=2.7e+02 Score=27.25 Aligned_cols=131 Identities=14% Similarity=0.264 Sum_probs=71.6
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCcccc--ccCcchhhhHHHHHHhhcCCCcccccCcccc
Q 043874 104 FAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSF--KQDYRPILDPLIRFLNENRSPLLFNLYPYFA 181 (308)
Q Consensus 104 ~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f--~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~ 181 (308)
+.+++.+.++..|+. .||+.+-..-.-|...+ +.| .++.-+-++.+++.|.+.+=-++++++|+..
T Consensus 41 ~~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~ 108 (441)
T PF01055_consen 41 NQDEVREVIDRYRSN--------GIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVS 108 (441)
T ss_dssp SHHHHHHHHHHHHHT--------T--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEE
T ss_pred CHHHHHHHHHHHHHc--------CCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEEEEEeecccC
Confidence 466677777777763 47888775433343222 122 2222245688999999999899999999776
Q ss_pred ccCCCccccccccccCCcceecCCCcchhhHHHHHHHHHHHHHHHcC----CCCccEEEeeeccCCCCC-CCCCCCHHHH
Q 043874 182 IADNRQISLDYALFGSQQTVVSDGSLSYLSLFDAMLDAVYAALEKTG----GGSLDIVISESGWPTAGG-DGALANVDNA 256 (308)
Q Consensus 182 ~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~~----~~~~~v~i~EtGWPs~G~-~~~vas~~na 256 (308)
.... .| ..++... ..+ .++-...+++. ||-.+. .. -+-.++
T Consensus 109 ~~~~-----~~------------------~~~~~~~--------~~~~~v~~~~g~~~~~~~-w~g~~~~~D--ftnp~a 154 (441)
T PF01055_consen 109 NDSP-----DY------------------ENYDEAK--------EKGYLVKNPDGSPYIGRV-WPGKGGFID--FTNPEA 154 (441)
T ss_dssp TTTT-----B-------------------HHHHHHH--------HTT-BEBCTTSSB-EEEE-TTEEEEEB---TTSHHH
T ss_pred CCCC-----cc------------------hhhhhHh--------hcCceeecccCCcccccc-cCCcccccC--CCChhH
Confidence 6421 11 1222211 112 12336677777 884433 23 333457
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCccEEEEEe
Q 043874 257 RTYNNNLIQHVKRGSPKRPGRPIETYIFAM 286 (308)
Q Consensus 257 ~~y~~~~~~~~~~gtp~rp~~~~~~~~F~~ 286 (308)
+.++++.++.+.+. .+++.++..+
T Consensus 155 ~~w~~~~~~~~~~~------~Gvdg~w~D~ 178 (441)
T PF01055_consen 155 RDWWKEQLKELLDD------YGVDGWWLDF 178 (441)
T ss_dssp HHHHHHHHHHHHTT------ST-SEEEEES
T ss_pred HHHHHHHHHHHHhc------cCCceEEeec
Confidence 88887776666421 2788998876
No 84
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=31.94 E-value=1.3e+02 Score=24.72 Aligned_cols=45 Identities=13% Similarity=0.230 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHhCCCCeEEeecCC-----hhHHHHHhcCCCeEEEecCC
Q 043874 15 LPSKRDVIAVYNQNNIRRMRLYDPN-----GEALEALRGSNIEVMLGLPN 59 (308)
Q Consensus 15 ~ps~~~v~~~l~~~~~~~VR~Y~~d-----~~vl~a~~~~gi~V~lGv~~ 59 (308)
..+++++++..+++|++.|=+=+=+ ..-...+...||+|++|+-.
T Consensus 15 ~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 15 KDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 4589999999999999988876443 35566666799999999975
No 85
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.94 E-value=3.7e+02 Score=23.56 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=47.0
Q ss_pred HHHHHHHHhCCCCeEEeecCC---------hhHHHHHhcCCCeEEE--ecCCchhHHHHhhHHHHHHHHHhhccccCCCc
Q 043874 19 RDVIAVYNQNNIRRMRLYDPN---------GEALEALRGSNIEVML--GLPNDDLQRIASNQAEANSWVQNNVRNFANNV 87 (308)
Q Consensus 19 ~~v~~~l~~~~~~~VR~Y~~d---------~~vl~a~~~~gi~V~l--Gv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~ 87 (308)
..+++.|.++|.++|=+.+.. .....+++..|+++.. ..+...........+.+.+|++++ .
T Consensus 98 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~ 170 (265)
T cd01543 98 RMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-------P 170 (265)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-------C
Confidence 344566666677766655432 1234455567776521 111111112222334455555432 1
Q ss_pred eEEEEeecccccCCCcchHHHHHHHHHHHHHHHHcCC--CCceeEeeeeec
Q 043874 88 KFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINEAGL--GNQIKVSTAIET 136 (308)
Q Consensus 88 ~I~~I~VGNE~l~~~~~~~~l~~~~~~v~~aL~~~gl--~~~v~Vst~~~~ 136 (308)
.+++|++.|+.+. .. +.++|++.|+ +++|.|.+-+..
T Consensus 171 ~~~ai~~~~d~~a--------~g----~~~~l~~~g~~vp~di~vigfd~~ 209 (265)
T cd01543 171 KPVGIFACTDARA--------RQ----LLEACRRAGIAVPEEVAVLGVDND 209 (265)
T ss_pred CCcEEEecChHHH--------HH----HHHHHHHhCCCCCCceEEEeeCCc
Confidence 2556776665542 12 2234444555 456777666544
No 86
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=30.67 E-value=1.2e+02 Score=31.07 Aligned_cols=73 Identities=15% Similarity=0.308 Sum_probs=48.8
Q ss_pred CCCCccEEEeeeccCCCCCC--------CCCCCHHHHHHHHHHHHHHHh-hcCCCCCCCCccEEEEEeecC-CCCCCCCC
Q 043874 228 GGGSLDIVISESGWPTAGGD--------GALANVDNARTYNNNLIQHVK-RGSPKRPGRPIETYIFAMFDE-NGKTGPET 297 (308)
Q Consensus 228 ~~~~~~v~i~EtGWPs~G~~--------~~vas~~na~~y~~~~~~~~~-~gtp~rp~~~~~~~~F~~fDe-~wK~~~~~ 297 (308)
.++|.+|.|+|-|-+..... ....=.+..+.|++.+.+++. .|+- -..+|..++-|- +|.. +.
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvn-----v~GYf~WSLmDnfEw~~--Gy 476 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVN-----VKGYFVWSLLDNFEWLD--GY 476 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCc-----eeeEEEeEcccchhhhc--Cc
Confidence 47789999999999987542 112334456677777777765 4552 235888888873 3443 46
Q ss_pred CCeeeecCCC
Q 043874 298 ERHWGLFAPN 307 (308)
Q Consensus 298 E~~wGlf~~d 307 (308)
.-.||||+.|
T Consensus 477 ~~RFGlyyVD 486 (524)
T KOG0626|consen 477 KVRFGLYYVD 486 (524)
T ss_pred ccccccEEEe
Confidence 7899999764
No 87
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=29.00 E-value=3.7e+02 Score=26.23 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHhC-CCCeEEee--cCC----------hhHHHHHhcCCCeEEEecCCchhHHHHhhHHHHHHHHHhhccc
Q 043874 16 PSKRDVIAVYNQN-NIRRMRLY--DPN----------GEALEALRGSNIEVMLGLPNDDLQRIASNQAEANSWVQNNVRN 82 (308)
Q Consensus 16 ps~~~v~~~l~~~-~~~~VR~Y--~~d----------~~vl~a~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~ 82 (308)
-+.+++..+|++. .|.+||+- ++- ....+.++++..+|++-.-..-...+..+..+|.+-+.++
T Consensus 172 ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~Eit~e~~~A~~~L~~a--- 248 (369)
T COG1509 172 LSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNEITPEAREACAKLRDA--- 248 (369)
T ss_pred cCHHHHHHHHHHHhcCCceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCChhhcCHHHHHHHHHHHHc---
Confidence 3566777777752 45555543 332 3455666677788888776554444544444443322222
Q ss_pred cCCCceEEEEeecccc-cCCC--cchHHHHHHHHHHHHHHHHcCC
Q 043874 83 FANNVKFKYIAVGNEA-KPGD--NFAQYLVPAMRNIQNAINEAGL 124 (308)
Q Consensus 83 ~~~~~~I~~I~VGNE~-l~~~--~~~~~l~~~~~~v~~aL~~~gl 124 (308)
+|.++|-. |.+| |.+.. |+++..+|...|.
T Consensus 249 --------Gv~l~NQsVLLrGVND~~ev----l~~L~~~L~~~gV 281 (369)
T COG1509 249 --------GVPLLNQSVLLRGVNDDPEV----LKELSRALFDAGV 281 (369)
T ss_pred --------CceeecchheecccCCCHHH----HHHHHHHHHHcCC
Confidence 67888874 4566 35543 4455555655553
No 88
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=28.79 E-value=4.6e+02 Score=24.07 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=25.1
Q ss_pred HHHHHhCCCCeEEeecCC---h---hHHHHHhcCCCeEEEec
Q 043874 22 IAVYNQNNIRRMRLYDPN---G---EALEALRGSNIEVMLGL 57 (308)
Q Consensus 22 ~~~l~~~~~~~VR~Y~~d---~---~vl~a~~~~gi~V~lGv 57 (308)
++.....+++.||++..- . ..++.+++.|++|...+
T Consensus 97 i~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i 138 (275)
T cd07937 97 VEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAI 138 (275)
T ss_pred HHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 444556789999999663 2 34555668899887665
No 89
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.36 E-value=5.8e+02 Score=25.05 Aligned_cols=57 Identities=12% Similarity=0.269 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhHHHHHHhhcCCCcccccCcc
Q 043874 104 FAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPY 179 (308)
Q Consensus 104 ~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPf 179 (308)
+.++.+.+++.+|++.. .+.++|.. +. .|| .+-.+.+...++|+.+ ..+-.+++++|
T Consensus 263 t~~~~~~~v~~lr~~~p------~i~i~~d~----Iv-GfP-------gETeedf~~Tl~fl~~-l~~~~~~~f~~ 319 (420)
T PRK14339 263 TKEWFLNRAEKLRALVP------EVSISTDI----IV-GFP-------GESDKDFEDTMDVLEK-VRFEQIFSFKY 319 (420)
T ss_pred CHHHHHHHHHHHHHHCC------CCEEEEEE----EE-ECC-------CCCHHHHHHHHHHHHh-cCCCEEeeEec
Confidence 56778888888887531 25666642 21 243 1112456677777753 34444677663
No 90
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=28.18 E-value=1.3e+02 Score=26.76 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=37.5
Q ss_pred eeEeecCCCCCCCCHHHHHHHHHhCCCCeEEeecC---C-hhHHHHHhcCCCeEEE
Q 043874 4 IGVCYGMLGNNLPSKRDVIAVYNQNNIRRMRLYDP---N-GEALEALRGSNIEVML 55 (308)
Q Consensus 4 ~Gv~Y~~~~~~~ps~~~v~~~l~~~~~~~VR~Y~~---d-~~vl~a~~~~gi~V~l 55 (308)
+.||++.....+ +.++.++.+++.||+.|-++.. + ..+.+.+.++||+|..
T Consensus 3 ~~~~~~~~~~~~-~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 3 FAANLSMLFTEL-PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred eeEehhHhhcCC-CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEE
Confidence 457766444444 5788999999999999998742 2 4577778899999753
No 91
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=27.93 E-value=95 Score=27.49 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=33.7
Q ss_pred HHHHHhCCCCeEEeecCChhHHHHHhcCCCeEEEecCCc
Q 043874 22 IAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGLPND 60 (308)
Q Consensus 22 ~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~lGv~~~ 60 (308)
+++|+-.|+++||+-+.++.=..++.+.||+|.=-++..
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 568899999999999989888889999999988777653
No 92
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=27.66 E-value=1.8e+02 Score=26.93 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=34.5
Q ss_pred eEEEEeecccccCCC--c-chHHHHHHHHHHHHHHHHcCCCCce-eEeeeeeccccccccCCCccccccCcchhhhHHHH
Q 043874 88 KFKYIAVGNEAKPGD--N-FAQYLVPAMRNIQNAINEAGLGNQI-KVSTAIETGALGESFPPSRGSFKQDYRPILDPLIR 163 (308)
Q Consensus 88 ~I~~I~VGNE~l~~~--~-~~~~l~~~~~~v~~aL~~~gl~~~v-~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~ 163 (308)
...-|+||+|.|... | .++.|. +.|...|+. + .++|.- |+ -+.+...++
T Consensus 3 ~a~iI~vG~ElL~G~ivdtNa~~la-------~~L~~~G~~--v~~~~~Vg-----------------D~-~~~I~~~l~ 55 (255)
T COG1058 3 KAEIIAVGDELLSGRIVDTNAAFLA-------DELTELGVD--LARITTVG-----------------DN-PDRIVEALR 55 (255)
T ss_pred eEEEEEEccceecCceecchHHHHH-------HHHHhcCce--EEEEEecC-----------------CC-HHHHHHHHH
Confidence 356799999999853 2 455444 445666763 4 232220 11 134566677
Q ss_pred HHhhcCCCcc
Q 043874 164 FLNENRSPLL 173 (308)
Q Consensus 164 fL~~~~d~~~ 173 (308)
.+.+..|++.
T Consensus 56 ~a~~r~D~vI 65 (255)
T COG1058 56 EASERADVVI 65 (255)
T ss_pred HHHhCCCEEE
Confidence 7777788774
No 93
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=27.65 E-value=1.4e+02 Score=26.67 Aligned_cols=72 Identities=14% Similarity=0.252 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHhCCCCeEEeecCC---------hhHHHHHh-cCCCeEEEecCCchhHHHHhhHHHHHHHHHhhccccC
Q 043874 15 LPSKRDVIAVYNQNNIRRMRLYDPN---------GEALEALR-GSNIEVMLGLPNDDLQRIASNQAEANSWVQNNVRNFA 84 (308)
Q Consensus 15 ~ps~~~v~~~l~~~~~~~VR~Y~~d---------~~vl~a~~-~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~ 84 (308)
..+|-++++.+.+.+++.+=+-|.| ..++..+. ..++.|.+|--....+ .+..|+..
T Consensus 28 ~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~e-------d~~~ll~~------ 94 (229)
T PF00977_consen 28 SGDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIRSIE-------DAERLLDA------ 94 (229)
T ss_dssp CCCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE-SHH-------HHHHHHHT------
T ss_pred CcCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccCcHH-------HHHHHHHh------
Confidence 3578899999999999999888776 13555544 5689999998764433 33333331
Q ss_pred CCceEEEEeecccccCCC
Q 043874 85 NNVKFKYIAVGNEAKPGD 102 (308)
Q Consensus 85 ~~~~I~~I~VGNE~l~~~ 102 (308)
-+..|++|.|.+.+.
T Consensus 95 ---Ga~~Vvigt~~~~~~ 109 (229)
T PF00977_consen 95 ---GADRVVIGTEALEDP 109 (229)
T ss_dssp ---T-SEEEESHHHHHCC
T ss_pred ---CCCEEEeChHHhhch
Confidence 144789999988643
No 94
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.34 E-value=6.3e+02 Score=25.12 Aligned_cols=193 Identities=12% Similarity=0.147 Sum_probs=90.7
Q ss_pred CCCHHHHHHH---HHhCCCCeEEeecCC-----------hhHHHHHhc-CCC-eEEEecCCchhHHHHhhHHHHHHHHHh
Q 043874 15 LPSKRDVIAV---YNQNNIRRMRLYDPN-----------GEALEALRG-SNI-EVMLGLPNDDLQRIASNQAEANSWVQN 78 (308)
Q Consensus 15 ~ps~~~v~~~---l~~~~~~~VR~Y~~d-----------~~vl~a~~~-~gi-~V~lGv~~~~~~~~a~~~~~a~~wv~~ 78 (308)
.-++++|++. |...|+..|.+.+-+ ...|.++.+ .++ .+-++..+. ..+..+. .+.+++
T Consensus 182 sr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p--~~~~~el---l~~m~~ 256 (449)
T PRK14332 182 SRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHP--KDFPDHL---LSLMAK 256 (449)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCc--ccCCHHH---HHHHHh
Confidence 4567888653 345789999888654 234455433 232 233333221 1121121 111221
Q ss_pred hccccCCCceEEEEeeccc-----ccC---CCcchHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCcccc
Q 043874 79 NVRNFANNVKFKYIAVGNE-----AKP---GDNFAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSF 150 (308)
Q Consensus 79 ~v~~~~~~~~I~~I~VGNE-----~l~---~~~~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f 150 (308)
. + .....|.+|=| +|- |+.+..+...+++.+|++.. .+.++|..-. .||
T Consensus 257 ~-----~-~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p------~i~i~td~Iv-----GfP------ 313 (449)
T PRK14332 257 N-----P-RFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP------DVGITTDIIV-----GFP------ 313 (449)
T ss_pred C-----C-CccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC------CCEEEEEEEe-----eCC------
Confidence 1 1 12446777733 332 33467888899999988632 2555554221 233
Q ss_pred ccCcchhhhHHHHHHhhcCCCcccccCccccccCCCccccccccccCCcceecCCCcchhhHHHHHHHHHHHHHHHcCCC
Q 043874 151 KQDYRPILDPLIRFLNENRSPLLFNLYPYFAIADNRQISLDYALFGSQQTVVSDGSLSYLSLFDAMLDAVYAALEKTGGG 230 (308)
Q Consensus 151 ~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~~~~~~~~~~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~~~~ 230 (308)
.+-.+.+...++|+. ...+=.+++|+|--..... .+..+.. .........++..+.+.|-.......++.-..
T Consensus 314 -gET~edf~~tl~~v~-~l~~~~~~~f~ys~~~GT~----a~~~~~~-~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~ 386 (449)
T PRK14332 314 -NETEEEFEDTLAVVR-EVQFDMAFMFKYSEREGTM----AKRKLPD-NVPEEVKSARLTKLVDLQTSISHEQNRARIGR 386 (449)
T ss_pred -CCCHHHHHHHHHHHH-hCCCCEEEEEEecCCCCCh----hHHhCcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111235566777774 3445556777753332110 1101111 00111122345555555544333334444335
Q ss_pred CccEEEeeeccC
Q 043874 231 SLDIVISESGWP 242 (308)
Q Consensus 231 ~~~v~i~EtGWP 242 (308)
..+|+|.+.+..
T Consensus 387 ~~~vlve~~~~~ 398 (449)
T PRK14332 387 VYSILIENTSRK 398 (449)
T ss_pred EEEEEEEeccCC
Confidence 678888765443
No 95
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=26.94 E-value=3.1e+02 Score=27.26 Aligned_cols=87 Identities=13% Similarity=0.199 Sum_probs=43.1
Q ss_pred HHHHHhC-CCCeEEeecCC---------hhHHHHHhcCCCeEEEecCCchhHHHHhhHHHHHHHHHhhccccCCCceEEE
Q 043874 22 IAVYNQN-NIRRMRLYDPN---------GEALEALRGSNIEVMLGLPNDDLQRIASNQAEANSWVQNNVRNFANNVKFKY 91 (308)
Q Consensus 22 ~~~l~~~-~~~~VR~Y~~d---------~~vl~a~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~ 91 (308)
++.|++. .++.||+..-- ..++..|++++ .+++++-.+....+..+..+|.+ .+... +
T Consensus 178 L~~L~~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~-~~~v~~h~nhp~Eit~~a~~Al~----~L~~a-------G 245 (417)
T TIGR03820 178 LTELRAIPHVEVIRIGTRVPVVLPQRITDELVAILKKHH-PVWLNTHFNHPREITASSKKALA----KLADA-------G 245 (417)
T ss_pred HHHHhhcCCCceEEEeeccccccccccCHHHHHHHHhcC-CeEEEEeCCChHhChHHHHHHHH----HHHHc-------C
Confidence 3334443 56777776431 45666777776 35555544433333322222221 12111 5
Q ss_pred Eeeccc-ccCCC--cchHHHHHHHHHHHHHHHHcCC
Q 043874 92 IAVGNE-AKPGD--NFAQYLVPAMRNIQNAINEAGL 124 (308)
Q Consensus 92 I~VGNE-~l~~~--~~~~~l~~~~~~v~~aL~~~gl 124 (308)
|.|||- +|.++ |.+.. |+++-..|.+.|.
T Consensus 246 I~l~nQsVLLkGVND~~~~----l~~L~~~L~~~gV 277 (417)
T TIGR03820 246 IPLGNQSVLLAGVNDCPRI----MKKLVHKLVANRV 277 (417)
T ss_pred CEEEeeceEECCcCCCHHH----HHHHHHHHHHCCC
Confidence 777875 44565 34443 4455555655654
No 96
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=26.45 E-value=1e+02 Score=27.80 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHhCCCCeEEeecCC--hhHHHHHhcCCCeEEEecCCchhHHH------------HhhHHHHHHHHHhhc
Q 043874 15 LPSKRDVIAVYNQNNIRRMRLYDPN--GEALEALRGSNIEVMLGLPNDDLQRI------------ASNQAEANSWVQNNV 80 (308)
Q Consensus 15 ~ps~~~v~~~l~~~~~~~VR~Y~~d--~~vl~a~~~~gi~V~lGv~~~~~~~~------------a~~~~~a~~wv~~~v 80 (308)
..+..+..++|...||..++..-+. .+...++...|-.|.+=+...++.+- .++...+.+.+.+.+
T Consensus 9 ~L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig~PvvlKi~sp~i~HKsd~GgV~L~l~~~~~v~~a~~~l~~~~ 88 (222)
T PF13549_consen 9 WLTEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIGFPVVLKIVSPDIAHKSDVGGVRLNLNSPEEVREAFERLRERV 88 (222)
T ss_dssp EE-HHHHHHHHHTTT------EEESSHHHHHHHHHHH-SSEEEEEE-TT---HHHHT-EEEEE-SHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhCCCEEEEEecCCCCcCCCCCcEEECCCCHHHHHHHHHHHHHHH
Confidence 4566788889999999888876443 46677766666655555543332211 122334444455556
Q ss_pred cccCCCceEEEEee
Q 043874 81 RNFANNVKFKYIAV 94 (308)
Q Consensus 81 ~~~~~~~~I~~I~V 94 (308)
..+.|...+.++.|
T Consensus 89 ~~~~p~~~~~gvlV 102 (222)
T PF13549_consen 89 AAHHPGARIDGVLV 102 (222)
T ss_dssp HHH-TT----EEEE
T ss_pred HHhCCCCccceEEE
Confidence 55556656666654
No 97
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.64 E-value=2.5e+02 Score=22.96 Aligned_cols=11 Identities=0% Similarity=-0.390 Sum_probs=5.0
Q ss_pred chHHHHHHHHH
Q 043874 104 FAQYLVPAMRN 114 (308)
Q Consensus 104 ~~~~l~~~~~~ 114 (308)
...+++.++.+
T Consensus 115 ~~~~i~~~l~~ 125 (132)
T TIGR00640 115 PIPESAIFLLK 125 (132)
T ss_pred CHHHHHHHHHH
Confidence 34444444444
No 98
>PHA02754 hypothetical protein; Provisional
Probab=25.50 E-value=61 Score=23.03 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHcCC-CCceeEeee
Q 043874 106 QYLVPAMRNIQNAINEAGL-GNQIKVSTA 133 (308)
Q Consensus 106 ~~l~~~~~~v~~aL~~~gl-~~~v~Vst~ 133 (308)
...-++|+++|..|.++|. -++|++-|.
T Consensus 14 K~Fke~MRelkD~LSe~GiYi~RIkai~~ 42 (67)
T PHA02754 14 KDFKEAMRELKDILSEAGIYIDRIKAITT 42 (67)
T ss_pred hHHHHHHHHHHHHHhhCceEEEEEEEEEe
Confidence 3456899999999999995 334655444
No 99
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=25.35 E-value=1.9e+02 Score=26.80 Aligned_cols=114 Identities=12% Similarity=0.140 Sum_probs=58.3
Q ss_pred cCCCeEEEecCCc--h---hHHHHhhH---HHHHHHHHhhccccCCCceEEEEeecccccCCC---cchHHHHHHHHHHH
Q 043874 48 GSNIEVMLGLPND--D---LQRIASNQ---AEANSWVQNNVRNFANNVKFKYIAVGNEAKPGD---NFAQYLVPAMRNIQ 116 (308)
Q Consensus 48 ~~gi~V~lGv~~~--~---~~~~a~~~---~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~---~~~~~l~~~~~~v~ 116 (308)
+.|+||++.|-.. . ...+..+. ....+-+.+-+..| .+.+|-+==|..... +....+...|+.+|
T Consensus 71 ~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y----~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~ 146 (343)
T PF00704_consen 71 NPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKY----GFDGIDIDWEYPSSSGDPQDKDNYTAFLKELR 146 (343)
T ss_dssp HTT-EEEEEEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHH----T-SEEEEEESSTTSTSSTTHHHHHHHHHHHHH
T ss_pred ccCceEEEEeccccccccccccccccHHHHHHHHHhhhhhhccc----Ccceeeeeeeeccccccchhhhhhhhhhhhhh
Confidence 4689987766433 1 22222222 11222222334444 356666654555332 35778889999999
Q ss_pred HHHHHcCCC-CceeEeeeeeccccccccCCCccccccCcchhhhHHHHHHhhcCCCcccccCcccc
Q 043874 117 NAINEAGLG-NQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYFA 181 (308)
Q Consensus 117 ~aL~~~gl~-~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~ 181 (308)
.+|++.+-. ....++.+....... ...+ -+..|.+.+|++.+-.|-|..
T Consensus 147 ~~l~~~~~~~~~~~ls~a~p~~~~~--------------~~~~--~~~~l~~~vD~v~~m~yD~~~ 196 (343)
T PF00704_consen 147 KALKRANRSGKGYILSVAVPPSPDY--------------YDKY--DYKELAQYVDYVNLMTYDYHG 196 (343)
T ss_dssp HHHHHHHHHHSTSEEEEEEECSHHH--------------HTTH--HHHHHHTTSSEEEEETTSSSS
T ss_pred hhhcccccccceeEEeecccccccc--------------cccc--ccccccccccccccccccCCC
Confidence 999875110 013444442211110 0111 234567889999888887766
No 100
>PRK07198 hypothetical protein; Validated
Probab=25.28 E-value=64 Score=31.78 Aligned_cols=37 Identities=35% Similarity=0.424 Sum_probs=32.0
Q ss_pred HHHHHhCCCCeE-EeecCChhHHHHHhcCCCeEEEecC
Q 043874 22 IAVYNQNNIRRM-RLYDPNGEALEALRGSNIEVMLGLP 58 (308)
Q Consensus 22 ~~~l~~~~~~~V-R~Y~~d~~vl~a~~~~gi~V~lGv~ 58 (308)
.++|+..|+++| |+.+.++.-+.++.+.||+|.==++
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 678999999999 9999998888899999999974444
No 101
>PHA01735 hypothetical protein
Probab=25.26 E-value=48 Score=24.38 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=21.5
Q ss_pred HHHhhHHHHHHHHHhhccccCCCceEEEEeeccccc
Q 043874 64 RIASNQAEANSWVQNNVRNFANNVKFKYIAVGNEAK 99 (308)
Q Consensus 64 ~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l 99 (308)
+.+++.++|..|+++| .|+++.+-|-.|
T Consensus 30 ATtaDL~AA~d~Lk~N--------dItgv~~~gspl 57 (76)
T PHA01735 30 ATTADLRAACDWLKSN--------DITGVAVDGSPL 57 (76)
T ss_pred ccHHHHHHHHHHHHHC--------CCceeeCCCCHH
Confidence 4456888999999855 588888877665
No 102
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=24.64 E-value=1.1e+02 Score=29.30 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHhCCCCeEEeecCC------hhHHHHHhcCCCeEEEecCC
Q 043874 15 LPSKRDVIAVYNQNNIRRMRLYDPN------GEALEALRGSNIEVMLGLPN 59 (308)
Q Consensus 15 ~ps~~~v~~~l~~~~~~~VR~Y~~d------~~vl~a~~~~gi~V~lGv~~ 59 (308)
.|+++++.++++... ..||+|... ..+++.+.+.||+|.+|=-+
T Consensus 145 ~~~~~~~~~~~~~~~-~~ik~~tlaPE~~~~~~~i~~~~~~gi~v~~GH~~ 194 (374)
T cd00854 145 APDPEELKKWLEAAG-GLIKLVTLAPELDGALELIRYLVERGIIVSIGHSD 194 (374)
T ss_pred CcCHHHHHHHHHhcC-CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCc
Confidence 367777777777643 678888554 36788888999999888654
No 103
>PRK09989 hypothetical protein; Provisional
Probab=24.31 E-value=1.8e+02 Score=26.16 Aligned_cols=51 Identities=8% Similarity=0.071 Sum_probs=38.3
Q ss_pred eeEeecCCCCCCCCHHHHHHHHHhCCCCeEEeec---CC-hhHHHHHhcCCCeEEE
Q 043874 4 IGVCYGMLGNNLPSKRDVIAVYNQNNIRRMRLYD---PN-GEALEALRGSNIEVML 55 (308)
Q Consensus 4 ~Gv~Y~~~~~~~ps~~~v~~~l~~~~~~~VR~Y~---~d-~~vl~a~~~~gi~V~l 55 (308)
..+|.+.....+ |-.+.++.+++.||+.|-+.. -+ ..+.+.++++||+|..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 456666665555 467889999999999999843 33 4677788899999876
No 104
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=24.31 E-value=90 Score=30.97 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=28.1
Q ss_pred HHHHHH----HHHhCCCCeEEeecCC------hhHHHHHhcCCCeEEEec
Q 043874 18 KRDVIA----VYNQNNIRRMRLYDPN------GEALEALRGSNIEVMLGL 57 (308)
Q Consensus 18 ~~~v~~----~l~~~~~~~VR~Y~~d------~~vl~a~~~~gi~V~lGv 57 (308)
+++|++ ....+|++.+|+||+- ...+++++++|..+-..+
T Consensus 96 aDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i 145 (472)
T COG5016 96 ADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTI 145 (472)
T ss_pred chHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEE
Confidence 366665 3335899999999884 357788888887555444
No 105
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.98 E-value=7.1e+02 Score=24.61 Aligned_cols=72 Identities=8% Similarity=0.076 Sum_probs=41.0
Q ss_pred EEEEeecccccC--------CCcchHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhH
Q 043874 89 FKYIAVGNEAKP--------GDNFAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDP 160 (308)
Q Consensus 89 I~~I~VGNE~l~--------~~~~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~ 160 (308)
...|.+|=|-.. ++-+.++...+++.+|+++ . .+.+++..-. .||= +-.+.+..
T Consensus 259 ~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~-----~-~i~i~~d~Iv-----G~Pg-------ET~ed~~~ 320 (446)
T PRK14337 259 CPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAAR-----P-DIALTTDLIV-----GFPG-------ETEEDFEQ 320 (446)
T ss_pred cCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhC-----C-CCeEEEeEEE-----ECCC-------CCHHHHHH
Confidence 446677655443 2225677888888888763 1 2556555322 2331 11245677
Q ss_pred HHHHHhhcCCCcccccCcc
Q 043874 161 LIRFLNENRSPLLFNLYPY 179 (308)
Q Consensus 161 ~l~fL~~~~d~~~vNiyPf 179 (308)
.++||.+ ..+-.+|+++|
T Consensus 321 tl~~l~~-~~~~~~~~f~y 338 (446)
T PRK14337 321 TLEAMRT-VGFASSFSFCY 338 (446)
T ss_pred HHHHHHh-cCCCeeEEEec
Confidence 7888754 45666677665
No 106
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=23.74 E-value=1.5e+02 Score=34.25 Aligned_cols=47 Identities=19% Similarity=0.346 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHhCCCCeEEeecCC-----hhHHHHHhcCCCeEEEecCC
Q 043874 13 NNLPSKRDVIAVYNQNNIRRMRLYDPN-----GEALEALRGSNIEVMLGLPN 59 (308)
Q Consensus 13 ~~~ps~~~v~~~l~~~~~~~VR~Y~~d-----~~vl~a~~~~gi~V~lGv~~ 59 (308)
+...+++++++..++.|.+.|-+=|-+ +....++++.||+|+.|+-.
T Consensus 347 Dg~~~~~elv~~A~~~G~~aIAITDH~~v~~~p~a~~~~k~~gikvI~GvE~ 398 (1437)
T PRK00448 347 DAIPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKAGIKVIYGVEA 398 (1437)
T ss_pred ccCCCHHHHHHHHHHCCCCEEEEecCCCCcCHHHHHHHHHhcCCceEeeeeE
Confidence 446789999999999999999997665 46677778899999999865
No 107
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=23.72 E-value=6.8e+02 Score=24.50 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhHHHHHHhhcCCCcccccCccccc
Q 043874 104 FAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYFAI 182 (308)
Q Consensus 104 ~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~~ 182 (308)
+..+.+.+++.+|+.. . .+.|++..-. .|| .+-.+.+...++|+.+ ..+-.+++++|--.
T Consensus 268 ~~~~~~~~i~~l~~~~----~--~i~i~~~~I~-----G~P-------gET~e~~~~t~~fl~~-~~~~~~~~~~~sp~ 327 (430)
T TIGR01125 268 SGEQQLDFIERLREKC----P--DAVLRTTFIV-----GFP-------GETEEDFQELLDFVEE-GQFDRLGAFTYSPE 327 (430)
T ss_pred CHHHHHHHHHHHHHhC----C--CCeEeEEEEE-----ECC-------CCCHHHHHHHHHHHHh-cCCCEEeeeeccCC
Confidence 5677888888887752 1 2455544321 122 1112456778888864 44556677776443
No 108
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=23.63 E-value=1.2e+02 Score=30.70 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=25.5
Q ss_pred HHHHHhCCCCeEEeecCC------hhHHHHHhcCCCeEEEecC
Q 043874 22 IAVYNQNNIRRMRLYDPN------GEALEALRGSNIEVMLGLP 58 (308)
Q Consensus 22 ~~~l~~~~~~~VR~Y~~d------~~vl~a~~~~gi~V~lGv~ 58 (308)
++....+|++.+|+++.- ...++++++.|..+.+.+-
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~ 153 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIA 153 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEE
Confidence 344457899999999774 2455667788987554443
No 109
>PRK05723 flavodoxin; Provisional
Probab=23.42 E-value=4.4e+02 Score=21.96 Aligned_cols=115 Identities=10% Similarity=0.151 Sum_probs=60.1
Q ss_pred eeeEeecCCCCCCC-CHHHHHHHHHhCCCCeEEeecCChhHHHHHhcCCCeEEEecCCchhHHHHhhHHHHHHHHHhhcc
Q 043874 3 QIGVCYGMLGNNLP-SKRDVIAVYNQNNIRRMRLYDPNGEALEALRGSNIEVMLGLPNDDLQRIASNQAEANSWVQNNVR 81 (308)
Q Consensus 3 ~~Gv~Y~~~~~~~p-s~~~v~~~l~~~~~~~VR~Y~~d~~vl~a~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~ 81 (308)
.++|-|+....+-- -++++.+.|++.+++..-+...+..-+..+. .. .|++++..........+-.....|+++...
T Consensus 2 ~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~~~~~~~~~~~-~~-~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~ 79 (151)
T PRK05723 2 KVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNPRASLQDLQAFA-PE-ALLAVTSTTGMGELPDNLMPLYSAIRDQLP 79 (151)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecCcCCHhHHHhCC-CC-eEEEEECCCCCCCCchhHHHHHHHHHhcCc
Confidence 47888887654432 2334455666666644223332222222221 12 356666553322222333344456665422
Q ss_pred ccCCCceEEEEeecccccCCCcchHHHHHHHHHHHHHHHHcCC
Q 043874 82 NFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINEAGL 124 (308)
Q Consensus 82 ~~~~~~~I~~I~VGNE~l~~~~~~~~l~~~~~~v~~aL~~~gl 124 (308)
..++..++..+-.||-. +.+.--.+++.+...|++.|=
T Consensus 80 ~~l~~~~~aVfGLGDs~-----Y~~~Fc~a~~~ld~~L~~lGA 117 (151)
T PRK05723 80 AAWRGLPGAVIALGDSS-----YGDTFCGGGEQMRELFAELGV 117 (151)
T ss_pred cCCCCCEEEEEeEeCCc-----chHHHhHHHHHHHHHHHHCCC
Confidence 23455566666777652 334566788899999998874
No 110
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=23.01 E-value=1.9e+02 Score=26.14 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=28.1
Q ss_pred HHHHHHhCCCCeEEee--cCC--hhHHHHHhcCCCeEEEec
Q 043874 21 VIAVYNQNNIRRMRLY--DPN--GEALEALRGSNIEVMLGL 57 (308)
Q Consensus 21 v~~~l~~~~~~~VR~Y--~~d--~~vl~a~~~~gi~V~lGv 57 (308)
+++.++++|+..|.++ +.- +.+|+++...|++|..=.
T Consensus 172 aakka~~~GIk~V~V~vKGpGgREtALRaL~~~GLkIt~I~ 212 (233)
T PTZ00090 172 IAKKCRRLGIFAVDIKFRRIMRVETVLQAFYANGLQVTQII 212 (233)
T ss_pred HHHHHHHcCCeEEEEEEeCCChHHHHHHHHHHCCCEEEEEE
Confidence 4556667899999988 332 689999999999987543
No 111
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=22.98 E-value=67 Score=26.19 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=26.7
Q ss_pred CCcc-ccccCcchhhhHHHHHHhh--cCCCcccccCccccccC
Q 043874 145 PSRG-SFKQDYRPILDPLIRFLNE--NRSPLLFNLYPYFAIAD 184 (308)
Q Consensus 145 ps~~-~f~~~~~~~~~~~l~fL~~--~~d~~~vNiyPff~~~~ 184 (308)
||.+ .+.+ ++++.-++.|... -+.++++|+||+-+..+
T Consensus 22 PS~A~~~~~--D~T~~~~~~~a~~~gyg~~~i~NLf~~~~t~p 62 (136)
T PF07799_consen 22 PSTADAEKD--DPTIRRCINFARRWGYGGVIIVNLFPQRSTDP 62 (136)
T ss_pred CCCCCCcCC--CHHHHHHHHHHhhcCCCeEEEEEecccccCCH
Confidence 4444 4444 3677788888754 67889999999988654
No 112
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=22.76 E-value=4.3e+02 Score=25.75 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCC
Q 043874 105 AQYLVPAMRNIQNAINEAGLG 125 (308)
Q Consensus 105 ~~~l~~~~~~v~~aL~~~gl~ 125 (308)
......-...++..|+++|+.
T Consensus 226 ~~~~~~~~~~~~~~L~~~Gy~ 246 (400)
T PRK07379 226 DETTAAMYRLAQEILTQAGYE 246 (400)
T ss_pred HHHHHHHHHHHHHHHHHcCCc
Confidence 345566677889999999995
No 113
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.50 E-value=3.3e+02 Score=24.50 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHh-CCCCeEEeecCC---------hhHHHHHh-cCCCeEEEecCCchhHHHHhhHHHHHHHHHhhccccC
Q 043874 16 PSKRDVIAVYNQ-NNIRRMRLYDPN---------GEALEALR-GSNIEVMLGLPNDDLQRIASNQAEANSWVQNNVRNFA 84 (308)
Q Consensus 16 ps~~~v~~~l~~-~~~~~VR~Y~~d---------~~vl~a~~-~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~ 84 (308)
.+|.++++.+.+ .|++.+=+.|.| ..+++.++ ..+++|.+|=-....+. +..++.
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~-------v~~~l~------- 96 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQ-------IMDYFA------- 96 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCHHH-------HHHHHH-------
Confidence 478888888877 789999999887 24776665 46899999766544432 222222
Q ss_pred CCceEEEEeecccccCC
Q 043874 85 NNVKFKYIAVGNEAKPG 101 (308)
Q Consensus 85 ~~~~I~~I~VGNE~l~~ 101 (308)
.-+..|+||++.+.+
T Consensus 97 --~Ga~kvvigt~a~~~ 111 (234)
T PRK13587 97 --AGINYCIVGTKGIQD 111 (234)
T ss_pred --CCCCEEEECchHhcC
Confidence 123457899999864
No 114
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.47 E-value=3.6e+02 Score=24.31 Aligned_cols=70 Identities=7% Similarity=0.092 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHhCCCCeEEeecCC--------hhHHHHHhc-CCCeEEEecCCchhHHHHhhHHHHHHHHHhhccccCCC
Q 043874 16 PSKRDVIAVYNQNNIRRMRLYDPN--------GEALEALRG-SNIEVMLGLPNDDLQRIASNQAEANSWVQNNVRNFANN 86 (308)
Q Consensus 16 ps~~~v~~~l~~~~~~~VR~Y~~d--------~~vl~a~~~-~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~ 86 (308)
.+|-++++.+++.+++.+=+.|.| ..+++.+.. .-+.|.+|=-....+ .+.+++.
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e-------~~~~~l~--------- 93 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIRDIE-------KAKRLLS--------- 93 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcCCHH-------HHHHHHH---------
Confidence 478899999999999999998887 257777765 334788865443332 2223332
Q ss_pred ceEEEEeecccccCC
Q 043874 87 VKFKYIAVGNEAKPG 101 (308)
Q Consensus 87 ~~I~~I~VGNE~l~~ 101 (308)
.-+..|+||++.+.+
T Consensus 94 ~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 94 LDVNALVFSTIVFTN 108 (232)
T ss_pred CCCCEEEECchhhCC
Confidence 124457899999864
No 115
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.44 E-value=8.1e+02 Score=24.74 Aligned_cols=56 Identities=14% Similarity=0.328 Sum_probs=30.1
Q ss_pred eEeecCCCCCCCCHHHHHHHHHh----CCCCeEEeecCC-----hhHHHHHhcCC---CeEEEecCCc
Q 043874 5 GVCYGMLGNNLPSKRDVIAVYNQ----NNIRRMRLYDPN-----GEALEALRGSN---IEVMLGLPND 60 (308)
Q Consensus 5 Gv~Y~~~~~~~ps~~~v~~~l~~----~~~~~VR~Y~~d-----~~vl~a~~~~g---i~V~lGv~~~ 60 (308)
|.|.+.|+.++..+....++|+. .+...||+-... .++|.++++.| ..|.+|+...
T Consensus 210 d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQSg 277 (502)
T PRK14326 210 GQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQSG 277 (502)
T ss_pred eecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccCCC
Confidence 44444444443333344444432 245567764332 56788887765 4577777653
No 116
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.42 E-value=3.9e+02 Score=24.19 Aligned_cols=70 Identities=11% Similarity=0.123 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHhCCCCeEEeecCC---------hhHHHHHhcCCCeEEEecCCchhHHHHhhHHHHHHHHHhhccccCCC
Q 043874 16 PSKRDVIAVYNQNNIRRMRLYDPN---------GEALEALRGSNIEVMLGLPNDDLQRIASNQAEANSWVQNNVRNFANN 86 (308)
Q Consensus 16 ps~~~v~~~l~~~~~~~VR~Y~~d---------~~vl~a~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~ 86 (308)
..|-++++.+++.+++.+=+.|.| .++++.+++.=+.|.+|=-....+ .+.+|+.
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vGGGIrs~e-------~~~~~l~--------- 93 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIGGGIRSLD-------YAEKLRK--------- 93 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEecCCCCHH-------HHHHHHH---------
Confidence 478899999999999999999887 257777765336777765543332 2333333
Q ss_pred ceEEEEeecccccCC
Q 043874 87 VKFKYIAVGNEAKPG 101 (308)
Q Consensus 87 ~~I~~I~VGNE~l~~ 101 (308)
.-+..|++|.+.+.+
T Consensus 94 ~Ga~rvvigT~a~~~ 108 (241)
T PRK14114 94 LGYRRQIVSSKVLED 108 (241)
T ss_pred CCCCEEEECchhhCC
Confidence 123457899999864
No 117
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.00 E-value=5.9e+02 Score=25.50 Aligned_cols=60 Identities=15% Similarity=0.239 Sum_probs=35.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhHHHHHHhhcCCCcccccCcc
Q 043874 101 GDNFAQYLVPAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPY 179 (308)
Q Consensus 101 ~~~~~~~l~~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPf 179 (308)
|+-+..+.+..++.+|+++.. +-++|... . .||= +-.+.....++++ +..-|=.+|+++|
T Consensus 275 R~yt~e~~~~~i~k~R~~~Pd------~~i~tDiI----V-GFPg-------ETeedFe~tl~lv-~e~~fd~~~~F~Y 334 (437)
T COG0621 275 RGYTVEEYLEIIEKLRAARPD------IAISTDII----V-GFPG-------ETEEDFEETLDLV-EEVRFDRLHVFKY 334 (437)
T ss_pred CCcCHHHHHHHHHHHHHhCCC------ceEeccEE----E-ECCC-------CCHHHHHHHHHHH-HHhCCCEEeeeec
Confidence 444678888899999987754 44444432 1 2441 0112334445554 5667888899986
No 118
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=21.97 E-value=4.2e+02 Score=21.27 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=15.9
Q ss_pred EEEEeecccccCCCcchHHHHHHHHH
Q 043874 89 FKYIAVGNEAKPGDNFAQYLVPAMRN 114 (308)
Q Consensus 89 I~~I~VGNE~l~~~~~~~~l~~~~~~ 114 (308)
...|.+|+-.+...+....++.+|..
T Consensus 100 ~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 100 FKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred CceEEEccCCCCCHHHHHHHHHHHHh
Confidence 33677787666655556666666543
No 119
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=21.90 E-value=2e+02 Score=24.44 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCeEEeec------------CC-hhHHHHHhcCCCeEEE
Q 043874 19 RDVIAVYNQNNIRRMRLYD------------PN-GEALEALRGSNIEVML 55 (308)
Q Consensus 19 ~~v~~~l~~~~~~~VR~Y~------------~d-~~vl~a~~~~gi~V~l 55 (308)
+++++.++..|++.|+++- .. ..+|++|+..||+|..
T Consensus 79 ~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~ 128 (149)
T PTZ00129 79 QDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGR 128 (149)
T ss_pred HHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 3456677788999888885 11 5799999999998754
No 120
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.72 E-value=2.9e+02 Score=23.76 Aligned_cols=43 Identities=16% Similarity=0.364 Sum_probs=27.2
Q ss_pred CCCeEEEecCCchhHHHHhhHHHHHHHHHhhccccCCCceEEEEeeccccc
Q 043874 49 SNIEVMLGLPNDDLQRIASNQAEANSWVQNNVRNFANNVKFKYIAVGNEAK 99 (308)
Q Consensus 49 ~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l 99 (308)
.|+-+|--+.|+ ++.++...|+. .|.. |.++++.-|.|||.-=
T Consensus 95 mgfiLmyDitNe------eSf~svqdw~t-qIkt-ysw~naqvilvgnKCD 137 (193)
T KOG0093|consen 95 MGFILMYDITNE------ESFNSVQDWIT-QIKT-YSWDNAQVILVGNKCD 137 (193)
T ss_pred ceEEEEEecCCH------HHHHHHHHHHH-Hhee-eeccCceEEEEecccC
Confidence 345555555553 23355667753 4444 4789999999999753
No 121
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=21.56 E-value=71 Score=25.48 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=17.8
Q ss_pred CHHHHHHHHHhCC---CCeEEeecCCh
Q 043874 17 SKRDVIAVYNQNN---IRRMRLYDPNG 40 (308)
Q Consensus 17 s~~~v~~~l~~~~---~~~VR~Y~~d~ 40 (308)
.|+++..+|++.. =+++||||++.
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG 28 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDG 28 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCC
Confidence 3677777777642 38999999983
No 122
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=21.06 E-value=6.8e+02 Score=23.33 Aligned_cols=75 Identities=9% Similarity=0.256 Sum_probs=36.8
Q ss_pred HHHHHhcCCCeEEEecCCchhHH-H--HhhHHHHHHHHHhhccccCCCceEEEEeecccccCCC----cchHHHHHHHHH
Q 043874 42 ALEALRGSNIEVMLGLPNDDLQR-I--ASNQAEANSWVQNNVRNFANNVKFKYIAVGNEAKPGD----NFAQYLVPAMRN 114 (308)
Q Consensus 42 vl~a~~~~gi~V~lGv~~~~~~~-~--a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~----~~~~~l~~~~~~ 114 (308)
-++.++..|+||+|.+--..... + .+..+...+-+.+-+..| .+.+|=+==|.-... .....++..|++
T Consensus 65 ~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~----g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~ 140 (312)
T cd02871 65 DIKALQAKGKKVLISIGGANGHVDLNHTAQEDNFVDSIVAIIKEY----GFDGLDIDLESGSNPLNATPVITNLISALKQ 140 (312)
T ss_pred HHHHHHHCCCEEEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHh----CCCeEEEecccCCccCCcHHHHHHHHHHHHH
Confidence 35567778999998874321111 1 111111111222223333 244444443432111 134778888999
Q ss_pred HHHHHH
Q 043874 115 IQNAIN 120 (308)
Q Consensus 115 v~~aL~ 120 (308)
+|..+.
T Consensus 141 lr~~~~ 146 (312)
T cd02871 141 LKDHYG 146 (312)
T ss_pred HHHHcC
Confidence 988763
No 123
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=21.01 E-value=6.4e+02 Score=23.50 Aligned_cols=95 Identities=25% Similarity=0.314 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCCCCceeEeeeeeccccccccCCCccccccCcchhhhHHHHHHhhcCCCcccccCccccccCCCccc
Q 043874 110 PAMRNIQNAINEAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLFNLYPYFAIADNRQIS 189 (308)
Q Consensus 110 ~~~~~v~~aL~~~gl~~~v~Vst~~~~~~~~~~~pps~~~f~~~~~~~~~~~l~fL~~~~d~~~vNiyPff~~~~~~~~~ 189 (308)
.+..+++.+.++.|+-+ +++..... .+.|+ .+.+.|+..+..+.+-|+.+|.=+......
T Consensus 113 ~a~~E~er~v~~~gf~g-~~l~p~~~------~~~~~--------~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~----- 172 (293)
T COG2159 113 AAAEELERRVRELGFVG-VKLHPVAQ------GFYPD--------DPRLYPIYEAAEELGVPVVIHTGAGPGGAG----- 172 (293)
T ss_pred HHHHHHHHHHHhcCceE-EEeccccc------CCCCC--------ChHHHHHHHHHHHcCCCEEEEeCCCCCCcc-----
Confidence 35566777777777754 55543321 11111 234688888898999999885544333221
Q ss_pred cccccccCCcceecCCCcchhhHHHHHHHHHHHHHHHcCCCCccEEEeeec--cCCCCC
Q 043874 190 LDYALFGSQQTVVSDGSLSYLSLFDAMLDAVYAALEKTGGGSLDIVISESG--WPTAGG 246 (308)
Q Consensus 190 ~~~a~f~~~~~~~~d~~~~y~n~~d~~~da~~~a~~~~~~~~~~v~i~EtG--WPs~G~ 246 (308)
+.... .+. - .+|-+ ..+ +|+++||+++.| +|..-.
T Consensus 173 ~~~~~--------~~p-----~----~~~~v---a~~--fP~l~IVl~H~G~~~p~~~~ 209 (293)
T COG2159 173 LEKGH--------SDP-----L----YLDDV---ARK--FPELKIVLGHMGEDYPWELE 209 (293)
T ss_pred cccCC--------CCc-----h----HHHHH---HHH--CCCCcEEEEecCCCCchhHH
Confidence 00000 000 1 12222 233 799999999999 887654
No 124
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=20.49 E-value=2.5e+02 Score=25.49 Aligned_cols=49 Identities=10% Similarity=0.130 Sum_probs=35.0
Q ss_pred eeEeecCCCCCCC----CHHHHHHHHHhCCCCeEEeecCC--------hhHHHHHhcCCCe
Q 043874 4 IGVCYGMLGNNLP----SKRDVIAVYNQNNIRRMRLYDPN--------GEALEALRGSNIE 52 (308)
Q Consensus 4 ~Gv~Y~~~~~~~p----s~~~v~~~l~~~~~~~VR~Y~~d--------~~vl~a~~~~gi~ 52 (308)
+=|+-||..+..+ +-+.-+.+|+.+|.++|+.|-.. ..|.+||++.|+.
T Consensus 119 VkISTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 119 VNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred EEeccCcccccCCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCc
Confidence 3455566655543 23445789999999999999665 2588888888874
No 125
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.38 E-value=6.2e+02 Score=23.14 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=19.7
Q ss_pred hCCCCeEEeecCC---h---hHHHHHhcCCCeEEEecCC
Q 043874 27 QNNIRRMRLYDPN---G---EALEALRGSNIEVMLGLPN 59 (308)
Q Consensus 27 ~~~~~~VR~Y~~d---~---~vl~a~~~~gi~V~lGv~~ 59 (308)
..+++.||++... . ..++.+++.|++|.+++..
T Consensus 93 ~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 93 GSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred cCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 4567777777443 1 3444455677777777654
No 126
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=20.36 E-value=4.8e+02 Score=23.18 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHhCCCCeEEeecCC--------hhHHHHHhcCCCeEEEecCCchhHHHHhhHHHHHHHHHhhccccCCCc
Q 043874 16 PSKRDVIAVYNQNNIRRMRLYDPN--------GEALEALRGSNIEVMLGLPNDDLQRIASNQAEANSWVQNNVRNFANNV 87 (308)
Q Consensus 16 ps~~~v~~~l~~~~~~~VR~Y~~d--------~~vl~a~~~~gi~V~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~ 87 (308)
.+|-++++.+.+.+++.+=+.|.| ..+++.+++. +.|.+|--....+. +.++.. .+ .
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~~~~~n~~~i~~i~~~-~~v~vgGGirs~e~-------~~~~~~-~l-----~- 100 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIVGLGDNFSLLSKLSKR-VELIADCGVRSPED-------LETLPF-TL-----E- 100 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEcccccCCcchHHHHHHHHhh-CcEEEcCccCCHHH-------HHHHHh-hh-----c-
Confidence 478899998889999999888887 2577777654 46777665433332 212111 00 1
Q ss_pred eEEEEeecccccCC
Q 043874 88 KFKYIAVGNEAKPG 101 (308)
Q Consensus 88 ~I~~I~VGNE~l~~ 101 (308)
....|++|.|.+.+
T Consensus 101 ~a~rvvigT~a~~~ 114 (221)
T TIGR00734 101 FASRVVVATETLDI 114 (221)
T ss_pred cceEEeecChhhCC
Confidence 15567899999864
No 127
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=20.16 E-value=6.5e+02 Score=22.75 Aligned_cols=93 Identities=9% Similarity=0.119 Sum_probs=56.3
Q ss_pred CHHHHHHHHHhCCCCeEEee-c-CC--hhHHHHHhcCCC--eEEEecCC-chhHHHHhhHHHHHHHHHhhccccCCCceE
Q 043874 17 SKRDVIAVYNQNNIRRMRLY-D-PN--GEALEALRGSNI--EVMLGLPN-DDLQRIASNQAEANSWVQNNVRNFANNVKF 89 (308)
Q Consensus 17 s~~~v~~~l~~~~~~~VR~Y-~-~d--~~vl~a~~~~gi--~V~lGv~~-~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I 89 (308)
.|++.++.+...|.+.|=+- . +. ..+|+.+++.|+ +.=|.+.. +.++.+.. +..+ -+.|
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~------------~l~~--vD~V 144 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEP------------YLDQ--IDLI 144 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHH------------HHhh--cCEE
Confidence 37788887777777766543 2 12 367788888998 55444432 22322211 1111 1445
Q ss_pred EEEeecccccCCCc-chHHHHHHHHHHHHHHHHcCCC
Q 043874 90 KYIAVGNEAKPGDN-FAQYLVPAMRNIQNAINEAGLG 125 (308)
Q Consensus 90 ~~I~VGNE~l~~~~-~~~~l~~~~~~v~~aL~~~gl~ 125 (308)
.-.+| |+=+.|+ ..+..++.|+++|+.++..|+.
T Consensus 145 LiMtV--~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~ 179 (228)
T PRK08091 145 QILTL--DPRTGTKAPSDLILDRVIQVENRLGNRRVE 179 (228)
T ss_pred EEEEE--CCCCCCccccHHHHHHHHHHHHHHHhcCCC
Confidence 55554 4434444 6778999999999999888875
No 128
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=20.12 E-value=1.9e+02 Score=25.50 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=21.5
Q ss_pred CCCHHHHHHHH----HhCCCCeEEeecCCh
Q 043874 15 LPSKRDVIAVY----NQNNIRRMRLYDPNG 40 (308)
Q Consensus 15 ~ps~~~v~~~l----~~~~~~~VR~Y~~d~ 40 (308)
..+|.+|++-| |++|++.||+=++.+
T Consensus 73 f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP 102 (228)
T COG5014 73 FLSPEEVAERLLEISKKRGCDLVRISGAEP 102 (228)
T ss_pred ccCHHHHHHHHHHHHHhcCCcEEEeeCCCc
Confidence 45899998866 789999999988774
Done!