BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043877
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
Length = 732
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 2 RSNLVQTSWAMMALIHAGQ-----MERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMG 56
+S + T WAMM L+ ERG + L+ QL GD+PQ+ + F
Sbjct: 646 QSQIHNTCWAMMGLMAVRHPDIEAQERG-------VRCLLEKQLPNGDWPQENIAGVFNK 698
Query: 57 NCMSHYPTYRNIFPTWALAEY 77
+C Y +YRNIFP WAL +
Sbjct: 699 SCAISYTSYRNIFPIWALGRF 719
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
Length = 732
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 2 RSNLVQTSWAMMALIHAGQ-----MERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMG 56
+S + T WAMM L+ ERG + L+ QL GD+PQ+ + F
Sbjct: 646 QSQIHNTCWAMMGLMAVRHPDIEAQERG-------VRCLLEKQLPNGDWPQENIAGVFNK 698
Query: 57 NCMSHYPTYRNIFPTWALAEY 77
+C Y +YRNIFP WAL +
Sbjct: 699 SCAISYTSYRNIFPIWALGRF 719
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 7 QTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELT-RAFMGNCMSHYPTY 65
QT+WA+MALI G+ E + L+ +Q +G + + T F G+ Y Y
Sbjct: 555 QTAWALMALIAGGRAESEAA--RRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMY 612
Query: 66 RNIFPTWALAEYRSKFQ 82
R++FPT AL Y+ +
Sbjct: 613 RHVFPTLALGRYKQAIE 629
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 7 QTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELT-RAFMGNCMSHYPTY 65
QT+WA+MALI G+ E + L+ +Q +G + + T F G+ Y Y
Sbjct: 555 QTAWALMALIAGGRAESEAA--RRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMY 612
Query: 66 RNIFPTWALAEYRSKFQ 82
R++FPT AL Y+ +
Sbjct: 613 RHVFPTLALGRYKQAIE 629
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 7 QTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELT-RAFMGNCMSHYPTY 65
QT+WA+MALI G+ E + L+ +Q +G + + T F G+ Y Y
Sbjct: 555 QTAWALMALIAGGRAESEAA--RRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMY 612
Query: 66 RNIFPTWALAEYRSKFQ 82
R++FPT AL Y+ +
Sbjct: 613 RHVFPTLALGRYKQAIE 629
>pdb|3EVI|A Chain A, Crystal Structure Of The Thioredoxin-Fold Domain Of
Human Phosducin- Like Protein 2
pdb|3EVI|B Chain B, Crystal Structure Of The Thioredoxin-Fold Domain Of
Human Phosducin- Like Protein 2
Length = 118
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 34 LLINSQLG--EGDFPQQELTRAFMGNCMSHYPTYRNIFPT 71
LL+N L FP+ + +A + +C+ HY + N PT
Sbjct: 39 LLVNQHLSLLARKFPETKFVKAIVNSCIQHY--HDNCLPT 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,720,458
Number of Sequences: 62578
Number of extensions: 88842
Number of successful extensions: 136
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 6
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)