Query 043877
Match_columns 87
No_of_seqs 114 out of 629
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:09:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 1.4E-32 2.9E-37 227.7 8.5 82 2-83 677-758 (759)
2 PLN02993 lupeol synthase 100.0 3.9E-31 8.5E-36 219.2 8.4 80 2-81 677-756 (763)
3 TIGR01507 hopene_cyclase squal 99.9 8.3E-27 1.8E-31 190.1 8.3 77 2-80 555-632 (635)
4 TIGR03463 osq_cycl 2,3-oxidosq 99.9 6.1E-27 1.3E-31 190.8 6.7 74 2-77 561-634 (634)
5 TIGR01787 squalene_cyclas squa 99.9 3.2E-26 6.9E-31 186.1 7.2 76 2-79 545-621 (621)
6 KOG0497 Oxidosqualene-lanoster 99.9 3.2E-25 7E-30 182.0 5.5 83 1-83 675-757 (760)
7 cd02892 SQCY_1 Squalene cyclas 99.9 7.3E-24 1.6E-28 171.9 6.7 74 2-77 561-634 (634)
8 cd02889 SQCY Squalene cyclase 99.7 9.1E-17 2E-21 119.5 6.4 74 2-77 275-348 (348)
9 COG1657 SqhC Squalene cyclase 99.5 8.7E-15 1.9E-19 118.0 -0.4 80 1-82 436-515 (517)
10 PLN03012 Camelliol C synthase 99.0 7.3E-10 1.6E-14 93.0 6.9 69 7-77 620-693 (759)
11 cd02897 A2M_2 Proteins similar 98.9 2.6E-09 5.7E-14 79.0 5.5 57 3-77 236-292 (292)
12 PLN02993 lupeol synthase 98.9 6E-09 1.3E-13 87.6 7.0 71 5-77 618-693 (763)
13 PF13243 Prenyltrans_1: Prenyl 98.7 4.4E-09 9.6E-14 66.9 1.5 45 3-48 24-68 (109)
14 cd02896 complement_C3_C4_C5 Pr 98.6 7E-08 1.5E-12 72.2 4.6 40 4-47 244-283 (297)
15 TIGR03463 osq_cycl 2,3-oxidosq 98.6 1.5E-07 3.3E-12 77.5 6.6 68 7-77 507-577 (634)
16 PF13249 Prenyltrans_2: Prenyl 98.5 2.1E-07 4.4E-12 59.0 5.0 44 2-49 20-65 (113)
17 cd00688 ISOPREN_C2_like This g 98.5 3.1E-07 6.7E-12 64.3 5.8 66 2-77 235-300 (300)
18 PF13249 Prenyltrans_2: Prenyl 98.5 7.4E-08 1.6E-12 61.1 2.3 43 3-46 70-112 (113)
19 cd02897 A2M_2 Proteins similar 98.4 1.2E-06 2.7E-11 64.8 6.9 72 3-76 78-152 (292)
20 TIGR01787 squalene_cyclas squa 98.3 1.3E-06 2.9E-11 71.8 6.0 66 2-77 435-501 (621)
21 TIGR01507 hopene_cyclase squal 98.3 2.4E-06 5.3E-11 70.5 6.8 64 3-77 449-512 (635)
22 cd02889 SQCY Squalene cyclase 98.2 5.7E-06 1.2E-10 61.6 7.3 71 3-80 23-107 (348)
23 KOG0497 Oxidosqualene-lanoster 98.1 3.4E-06 7.4E-11 70.7 5.1 70 8-77 620-692 (760)
24 cd02896 complement_C3_C4_C5 Pr 98.1 7.9E-06 1.7E-10 61.1 6.2 74 4-79 80-159 (297)
25 cd00688 ISOPREN_C2_like This g 98.0 2.8E-05 6.1E-10 54.3 6.5 64 2-77 137-200 (300)
26 cd02892 SQCY_1 Squalene cyclas 97.9 2.9E-05 6.4E-10 63.7 6.7 65 2-76 447-516 (634)
27 PF07678 A2M_comp: A-macroglob 97.8 5.4E-05 1.2E-09 55.4 6.0 55 4-78 191-245 (246)
28 TIGR02474 pec_lyase pectate ly 97.8 4.2E-05 9.1E-10 58.5 5.1 35 17-52 59-93 (290)
29 cd02891 A2M_like Proteins simi 97.7 0.00021 4.5E-09 51.7 6.9 76 2-78 76-153 (282)
30 PF07678 A2M_comp: A-macroglob 97.5 0.00011 2.4E-09 53.7 3.9 47 3-49 25-72 (246)
31 PF09492 Pec_lyase: Pectic aci 97.3 0.0002 4.3E-09 54.8 2.9 27 25-51 61-87 (289)
32 TIGR01577 oligosac_amyl oligos 97.1 0.0018 3.9E-08 53.0 6.8 71 7-83 299-371 (616)
33 cd02890 PTase Protein prenyltr 97.0 0.0023 5E-08 47.0 6.2 42 2-45 172-214 (286)
34 PF00432 Prenyltrans: Prenyltr 96.9 0.00097 2.1E-08 37.0 2.6 22 28-49 3-24 (44)
35 cd02894 GGTase-II Geranylgeran 96.9 0.0019 4E-08 48.2 4.9 43 2-46 174-216 (287)
36 PF13243 Prenyltrans_1: Prenyl 96.6 0.0028 6.2E-08 39.9 3.7 38 3-41 71-108 (109)
37 cd02890 PTase Protein prenyltr 96.6 0.0041 8.9E-08 45.7 4.9 47 2-48 74-120 (286)
38 PLN02592 ent-copalyl diphospha 96.0 0.006 1.3E-07 52.3 3.0 42 4-48 96-137 (800)
39 cd02891 A2M_like Proteins simi 95.7 0.028 6.2E-07 40.5 5.2 54 4-77 229-282 (282)
40 cd02894 GGTase-II Geranylgeran 95.5 0.038 8.1E-07 41.2 5.4 39 6-48 132-170 (287)
41 cd02895 GGTase-I Geranylgerany 95.5 0.032 6.9E-07 42.4 5.0 46 2-47 191-237 (307)
42 TIGR01535 glucan_glucosid gluc 95.3 0.058 1.3E-06 45.3 6.4 66 7-79 299-365 (648)
43 COG1657 SqhC Squalene cyclase 95.3 0.039 8.4E-07 45.4 5.3 71 8-80 383-453 (517)
44 PLN02279 ent-kaur-16-ene synth 95.0 0.032 6.8E-07 47.8 4.0 67 4-78 54-120 (784)
45 PLN03201 RAB geranylgeranyl tr 93.8 0.18 3.9E-06 38.5 5.5 39 8-48 136-174 (316)
46 PLN03201 RAB geranylgeranyl tr 93.7 0.12 2.6E-06 39.4 4.4 54 2-59 178-231 (316)
47 cd02895 GGTase-I Geranylgerany 93.5 0.2 4.3E-06 38.1 5.3 48 2-49 141-188 (307)
48 cd02893 FTase Protein farnesyl 93.2 0.23 5.1E-06 37.5 5.2 45 3-48 25-69 (299)
49 cd02893 FTase Protein farnesyl 92.7 0.31 6.8E-06 36.8 5.3 43 2-46 172-215 (299)
50 COG3387 SGA1 Glucoamylase and 91.6 0.17 3.7E-06 42.2 3.0 62 7-72 289-351 (612)
51 PLN02710 farnesyltranstransfer 89.8 0.95 2.1E-05 36.6 5.6 54 2-59 217-270 (439)
52 KOG0367 Protein geranylgeranyl 88.1 0.59 1.3E-05 36.7 3.3 21 27-47 229-249 (347)
53 TIGR02474 pec_lyase pectate ly 87.8 0.44 9.5E-06 36.7 2.4 20 26-45 137-156 (290)
54 PLN02710 farnesyltranstransfer 85.7 1.9 4.2E-05 34.9 5.1 44 3-47 70-113 (439)
55 PF01122 Cobalamin_bind: Eukar 85.1 1.7 3.7E-05 34.0 4.4 50 4-53 185-242 (326)
56 KOG1366 Alpha-macroglobulin [P 85.1 1.7 3.7E-05 39.8 5.0 59 5-83 1158-1216(1436)
57 KOG1366 Alpha-macroglobulin [P 82.0 1.6 3.5E-05 40.0 3.5 43 6-48 1003-1046(1436)
58 COG1689 Uncharacterized protei 79.5 2.8 6E-05 31.9 3.5 44 6-53 212-255 (274)
59 PF07470 Glyco_hydro_88: Glyco 76.2 6.8 0.00015 29.4 4.9 78 4-81 248-336 (336)
60 PF07221 GlcNAc_2-epim: N-acyl 75.3 3.6 7.8E-05 30.9 3.2 61 18-83 36-98 (346)
61 PF07849 DUF1641: Protein of u 75.2 3.9 8.4E-05 22.6 2.6 16 24-40 22-37 (42)
62 cd04794 euk_LANCL eukaryotic L 74.3 5.3 0.00012 30.1 3.9 41 8-48 170-210 (343)
63 cd00249 AGE AGE domain; N-acyl 72.2 9.7 0.00021 28.5 4.9 72 8-83 55-133 (384)
64 COG5029 CAL1 Prenyltransferase 70.2 9.4 0.0002 30.2 4.5 52 3-59 201-254 (342)
65 COG2942 N-acyl-D-glucosamine 2 68.4 8.1 0.00017 31.1 3.9 68 9-81 63-132 (388)
66 PLN03005 beta-fructofuranosida 66.9 20 0.00042 30.1 5.9 75 5-81 203-290 (550)
67 COG5029 CAL1 Prenyltransferase 63.8 11 0.00024 29.8 3.8 37 8-48 160-196 (342)
68 TIGR01577 oligosac_amyl oligos 63.4 29 0.00063 28.7 6.3 60 5-64 533-603 (616)
69 PF10022 DUF2264: Uncharacteri 62.4 12 0.00025 29.5 3.7 42 9-52 159-200 (361)
70 KOG0365 Beta subunit of farnes 61.3 16 0.00034 29.6 4.2 38 9-47 104-141 (423)
71 KOG0366 Protein geranylgeranyl 55.8 17 0.00037 28.4 3.5 36 9-46 51-86 (329)
72 KOG0366 Protein geranylgeranyl 53.4 14 0.0003 28.9 2.7 36 8-47 148-183 (329)
73 PLN02973 beta-fructofuranosida 52.8 41 0.0009 28.4 5.5 70 5-81 224-311 (571)
74 cd00194 UBA Ubiquitin Associat 50.2 31 0.00067 17.6 3.1 24 8-37 15-38 (38)
75 PF05592 Bac_rhamnosid: Bacter 47.9 64 0.0014 25.5 5.8 28 24-51 167-194 (509)
76 PF14836 Ubiquitin_3: Ubiquiti 45.5 3.1 6.6E-05 26.9 -1.7 20 28-47 69-88 (88)
77 KOG3760 Heparan sulfate-glucur 45.1 17 0.00037 30.0 2.2 23 26-48 380-402 (594)
78 PF09282 Mago-bind: Mago bindi 44.9 6.4 0.00014 20.3 -0.2 14 35-48 5-18 (27)
79 PF00627 UBA: UBA/TS-N domain; 44.7 40 0.00087 17.4 3.0 19 11-35 19-37 (37)
80 PF09492 Pec_lyase: Pectic aci 43.9 15 0.00031 28.4 1.5 25 26-50 132-160 (289)
81 PF01122 Cobalamin_bind: Eukar 42.5 37 0.0008 26.6 3.6 44 4-48 236-280 (326)
82 PF07944 DUF1680: Putative gly 41.9 67 0.0015 26.0 5.1 53 26-84 83-144 (520)
83 cd06906 M14_Nna1 Peptidase M14 41.2 1.5E+02 0.0033 22.7 6.7 75 6-81 66-148 (278)
84 COG2427 Uncharacterized conser 39.5 36 0.00077 23.4 2.8 25 12-40 116-140 (148)
85 smart00165 UBA Ubiquitin assoc 36.7 51 0.0011 16.7 2.6 21 10-36 17-37 (37)
86 PF06376 DUF1070: Protein of u 35.4 35 0.00076 18.4 1.8 13 24-36 10-22 (34)
87 COG2373 Large extracellular al 35.3 46 0.001 31.4 3.5 43 4-46 1169-1219(1621)
88 KOG0367 Protein geranylgeranyl 34.8 32 0.0007 27.2 2.2 22 28-49 176-197 (347)
89 PF03991 Prion_octapep: Copper 33.2 21 0.00047 13.4 0.5 6 42-47 3-8 (8)
90 PLN02592 ent-copalyl diphospha 27.4 96 0.0021 27.2 4.0 49 5-56 146-198 (800)
91 COG3387 SGA1 Glucoamylase and 26.8 1.5E+02 0.0032 25.0 4.9 45 5-53 537-581 (612)
92 PF15144 DUF4576: Domain of un 25.7 1.9E+02 0.0041 18.6 4.2 20 27-46 57-76 (88)
93 cd04793 LanC LanC is the cycla 22.0 1.7E+02 0.0036 22.2 4.1 40 8-47 177-219 (382)
94 PRK13739 conjugal transfer pro 20.2 60 0.0013 23.9 1.3 12 8-19 122-134 (198)
No 1
>PLN03012 Camelliol C synthase
Probab=99.97 E-value=1.4e-32 Score=227.70 Aligned_cols=82 Identities=70% Similarity=1.149 Sum_probs=78.2
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhh
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKF 81 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~ 81 (87)
.||++||||||+||+++|++++++++|+|||+||+++|++||+|+|++++|+||++|||+||+||++|||||||+|++..
T Consensus 677 ~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y~~~~ 756 (759)
T PLN03012 677 ISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLLHYAAYRNIFPLWALAEYRARV 756 (759)
T ss_pred CCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEEecCccchHHHHHHHHHHHHhc
Confidence 59999999999999999998777778999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 043877 82 QS 83 (87)
Q Consensus 82 ~~ 83 (87)
+.
T Consensus 757 ~~ 758 (759)
T PLN03012 757 PL 758 (759)
T ss_pred cC
Confidence 64
No 2
>PLN02993 lupeol synthase
Probab=99.97 E-value=3.9e-31 Score=219.17 Aligned_cols=80 Identities=71% Similarity=1.136 Sum_probs=76.2
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhh
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKF 81 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~ 81 (87)
.||++|||||||||+++|++++++++|+|||+||+++|++||+|+|++++|+||++|||+||+||++|||||||+|++..
T Consensus 677 ~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~i~Y~~Yr~~FPl~ALg~Y~~~~ 756 (763)
T PLN02993 677 RSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCMLHYATYRNTFPLWALAEYRKAA 756 (763)
T ss_pred CCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccceeccCccchHHHHHHHHHHHHhh
Confidence 59999999999999999988766678999999999999999999999999999999999999999999999999999864
No 3
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=99.94 E-value=8.3e-27 Score=190.13 Aligned_cols=77 Identities=34% Similarity=0.604 Sum_probs=73.0
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcccccc-ccccccccCCCchhHHhHHHHHHHHHh
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRA-FMGNCMSHYPTYRNIFPTWALAEYRSK 80 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~-f~~~~~i~Y~~Y~~~fPl~ALg~y~~~ 80 (87)
.|+++||||||+||++++..+ + ++|+||++||+++|++||+|+|+.++|+ ||++|||+||+|+++|||||||||++.
T Consensus 555 ~s~~s~TA~AL~AL~~ag~~~-~-~~I~rav~~L~~~Q~~dG~W~e~~~~g~gfp~~~yi~Y~~Y~~~fpl~ALg~y~~~ 632 (635)
T TIGR01507 555 ASTASQTAWALIALIAAGRAE-S-EAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYHMYRHVFPLLALARYKQA 632 (635)
T ss_pred CCcHHHHHHHHHHHHHhCCCC-c-HHHHHHHHHHHHhcCCCCCCCCcccccCcccceeeecccchhhHhHHHHHHHHHHh
Confidence 589999999999999999875 3 5799999999999999999999999999 999999999999999999999999984
No 4
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=99.93 E-value=6.1e-27 Score=190.76 Aligned_cols=74 Identities=35% Similarity=0.641 Sum_probs=70.3
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHH
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEY 77 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y 77 (87)
.|+++||||||+||+++|+.+ + ++|+|||+||+++|++||+|+++.++|+||++|||+||+|+++|||||||+|
T Consensus 561 ~S~~~~TA~Al~aL~~~g~~~-~-~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~l~Y~~Y~~~fpl~ALg~y 634 (634)
T TIGR03463 561 QSQAVMTSWALLALAEAGEGG-H-DAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAMLDYDLYLRYFPTWALAVC 634 (634)
T ss_pred CCcHHHHHHHHHHHHHcCCcC-C-HHHHHHHHHHHHhCCCCCCCCCCceeeeeCcceeEecCccchHhHHHHhhcC
Confidence 589999999999999999875 3 4799999999999999999999999999999999999999999999999997
No 5
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=99.93 E-value=3.2e-26 Score=186.13 Aligned_cols=76 Identities=43% Similarity=0.783 Sum_probs=71.1
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcccccc-ccccccccCCCchhHHhHHHHHHHHH
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRA-FMGNCMSHYPTYRNIFPTWALAEYRS 79 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~-f~~~~~i~Y~~Y~~~fPl~ALg~y~~ 79 (87)
.|+++||||||+||++++..+ .++|+|||+||+++|++||+|+|++++|+ ||+.|||+||+|+++|||||||||++
T Consensus 545 ~S~~s~Ta~AL~AL~~ag~~~--~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~~i~Y~~Y~~~fpl~ALg~y~~ 621 (621)
T TIGR01787 545 GSTPSQTGWALMALIAAGEAD--SEAIERGVKYLLETQRPDGDWPQEYITGVGFPKNFYLKYTNYRNIFPLWALGRYRQ 621 (621)
T ss_pred CCCHHHHHHHHHHHHHcCccc--hHHHHHHHHHHHHhCCCCCCCCCccccCCCCcccceecccccchhhHHHHHHHHhC
Confidence 589999999999999999875 25799999999999999999999999999 77999999999999999999999974
No 6
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.91 E-value=3.2e-25 Score=182.04 Aligned_cols=83 Identities=69% Similarity=1.160 Sum_probs=79.8
Q ss_pred CCchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHh
Q 043877 1 NRSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSK 80 (87)
Q Consensus 1 ~~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~ 80 (87)
|+|.++||+||||+|+.++++++||.+++||++.|++.|.++|+|+++.+.|+|+++|+|+|+.||++|||||||+|++.
T Consensus 675 n~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq~i~g~f~~~~~~~y~~yr~~F~~waL~~y~~~ 754 (760)
T KOG0497|consen 675 NKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQQEIEGVFNKNCMIHYPTYRNIFPIWALGEYRKA 754 (760)
T ss_pred ccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcchhHHHHHhhhhhhhccchhhhhccHHHHHHHHHH
Confidence 57999999999999999999999888999999999999999999999999999999999999999999999999999998
Q ss_pred hcC
Q 043877 81 FQS 83 (87)
Q Consensus 81 ~~~ 83 (87)
+..
T Consensus 755 ~~~ 757 (760)
T KOG0497|consen 755 YRL 757 (760)
T ss_pred hhh
Confidence 764
No 7
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.89 E-value=7.3e-24 Score=171.87 Aligned_cols=74 Identities=45% Similarity=0.824 Sum_probs=68.7
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHH
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEY 77 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y 77 (87)
.|++++|||||++|+.+++.+ .++++||++||+++|++||+|+++.++|+|++.|||+||+||++|||||||||
T Consensus 561 ~s~~~~TA~AllaLl~~g~~~--~~~i~r~i~wL~~~Q~~~G~w~~~~~~g~~~~~~~~~y~~Y~~~fpl~ALg~y 634 (634)
T cd02892 561 RSTVVQTAWALLALMAAGEPD--SEAVERGIKYLLNTQLPDGDWPQEEITGVGFPNFYIRYHNYRNYFPLWALGRY 634 (634)
T ss_pred CCcHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHcCCCCCCCCCcccccccCCCeeeccCchhhHhHHHHhhcC
Confidence 488999999999999999874 35799999999999999999999999999666699999999999999999997
No 8
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.67 E-value=9.1e-17 Score=119.46 Aligned_cols=74 Identities=45% Similarity=0.865 Sum_probs=68.7
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHH
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEY 77 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y 77 (87)
.+++..||+||++|+.++..+ + +.++|+++||++.|++||+|..+..+|++.+.|++.|++|+++|||+|||+|
T Consensus 275 ~~~~~~Ta~al~aL~~~g~~~-~-~~v~~a~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (348)
T cd02889 275 RSTVVQTAWALLALMAAGEPD-S-EAVKRGVKYLLNTQQEDGDWPQEEITGVFFKNFYIRYHNYRNYFPLWALGRY 348 (348)
T ss_pred CCcHHHHHHHHHHHHhcCCCC-H-HHHHHHHHHHHHhcCCCCCcCCceeeeeecceeeeccCccchHhHHHHhhcC
Confidence 468899999999999999864 3 5799999999999999999999999999989999999999999999999986
No 9
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.45 E-value=8.7e-15 Score=118.03 Aligned_cols=80 Identities=31% Similarity=0.524 Sum_probs=74.0
Q ss_pred CCchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHh
Q 043877 1 NRSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSK 80 (87)
Q Consensus 1 ~~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~ 80 (87)
+.|.++||+||+++|+.+.+++ .++|++|+++|++.|.++|.|.+.+.+|+|+.+|+|.||.|+.+||+.+||+|-+.
T Consensus 436 ~~sl~~~~~wal~~~~~a~~~~--~~~i~~~~~~~~~~~~~~g~~~~~~~eg~~~~~~~~~~~~~~~~~p~~~lg~y~~~ 513 (517)
T COG1657 436 ESSLLVQTNWALIALLTALEPN--QEAIKPGINLLVSDQEPDGSWREAEREGGFNCNFAIGYPYYLAYFPIIALGRYGGQ 513 (517)
T ss_pred cchhhcchhHHHHHHHHhcccc--hhhhcccccccccCcCCCCccccceecccCCCCcceeeeeEEeecCchhhcccccc
Confidence 3588999999999999999995 45799999999999999999999999999999999999999999999999999765
Q ss_pred hc
Q 043877 81 FQ 82 (87)
Q Consensus 81 ~~ 82 (87)
+.
T Consensus 514 ~~ 515 (517)
T COG1657 514 YR 515 (517)
T ss_pred cc
Confidence 43
No 10
>PLN03012 Camelliol C synthase
Probab=99.01 E-value=7.3e-10 Score=93.00 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcccccccccccccc-----CCCchhHHhHHHHHHH
Q 043877 7 QTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSH-----YPTYRNIFPTWALAEY 77 (87)
Q Consensus 7 qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~-----Y~~Y~~~fPl~ALg~y 77 (87)
.|+|||.||.++|....+.++|+|||+||+++|++||||+|... ++...-|+. =+.+...|.|+||-..
T Consensus 620 gT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~--Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~a 693 (759)
T PLN03012 620 GTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYL--SCPKKIYIAQEGEISNLVQTAWALMGLIHA 693 (759)
T ss_pred HHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCC--CCCCccccCCCCCCCcHHHHHHHHHHHHHc
Confidence 79999999999998654445899999999999999999998852 222223333 2347888999999754
No 11
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=98.90 E-value=2.6e-09 Score=79.01 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=47.2
Q ss_pred chHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHH
Q 043877 3 SNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEY 77 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y 77 (87)
+++++||||||||++++.+. .+.+.++|+||+++|++||+|.-.. ..++.|.||++|
T Consensus 236 ~~ve~TAyaLlall~~~~~~--~~~~~~~v~WL~~~q~~~Ggf~sTQ----------------dt~~al~AL~~y 292 (292)
T cd02897 236 AEVEMTAYALLALLSAGGED--LAEALPIVKWLAKQRNSLGGFSSTQ----------------DTVVALQALAKY 292 (292)
T ss_pred chHHHHHHHHHHHHHcCCcc--HhHHHHHHHHHHHcCCCCCCcccHH----------------HHHHHHHHHHcC
Confidence 68999999999999998633 3469999999999999999996332 367888898876
No 12
>PLN02993 lupeol synthase
Probab=98.86 E-value=6e-09 Score=87.60 Aligned_cols=71 Identities=14% Similarity=0.157 Sum_probs=53.8
Q ss_pred HhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcccccccccccccc-----CCCchhHHhHHHHHHH
Q 043877 5 LVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSH-----YPTYRNIFPTWALAEY 77 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~-----Y~~Y~~~fPl~ALg~y 77 (87)
.-.|++||.||+++|....+.+.|+|||+||++.|++||+|+|... ++...-|.. =+.|...|.|+||...
T Consensus 618 ~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~--S~~~~~y~~~~~~~St~~qTAwAllaL~~a 693 (763)
T PLN02993 618 IYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYL--SCPEQRYIPLEGNRSNLVQTAWAMMGLIHA 693 (763)
T ss_pred CcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcC--cCCCcccccCCCCCCchhhHHHHHHHHHHc
Confidence 3479999999999998754445899999999999999999998752 211122332 2448899999999765
No 13
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=98.72 E-value=4.4e-09 Score=66.93 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=18.0
Q ss_pred chHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 3 SNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
+++..|+|++++|...+.+..+ ++|+||++||+++|++||+|+..
T Consensus 24 ~~~~~t~~~~~al~~~~~~~~~-~ai~ka~~~l~~~Q~~dG~w~~~ 68 (109)
T PF13243_consen 24 SDVFVTAALILALAAAGDAAVD-EAIKKAIDWLLSHQNPDGGWGYS 68 (109)
T ss_dssp -----------------TS-SS-BSSHHHHHHHHH---TTS--S-T
T ss_pred ccccccccccccccccCCCCcH-HHHHHHHHHHHHhcCCCCCCCCc
Confidence 4678999999999999876644 47999999999999999999865
No 14
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=98.58 E-value=7e-08 Score=72.19 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=35.5
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCC
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQ 47 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e 47 (87)
+|++||||||||++.+.. +.+.++|+||.+.|+.+|+|.-
T Consensus 244 ~vE~TAYALLall~~~~~----~~a~~iv~WL~~qr~~~Ggf~s 283 (297)
T cd02896 244 TVETTAYALLALLKLGDI----EYANPIARWLTEQRNYGGGFGS 283 (297)
T ss_pred hhHHHHHHHHHHHhcCCc----hhHHHHHHHHHhcCCCCCCeeh
Confidence 799999999999999843 3589999999999999999963
No 15
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=98.57 E-value=1.5e-07 Score=77.51 Aligned_cols=68 Identities=22% Similarity=0.166 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccc---cCCCchhHHhHHHHHHH
Q 043877 7 QTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMS---HYPTYRNIFPTWALAEY 77 (87)
Q Consensus 7 qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i---~Y~~Y~~~fPl~ALg~y 77 (87)
-|+|||+||.++|....+ +.|+||++||++.|++||+|++..... + ...|+ .-+.|...+.|.||...
T Consensus 507 ~T~~al~aL~~~G~~~~~-~~i~rA~~~Ll~~Q~~DGgWg~~~~s~-~-~~~y~~~~~S~~~~TA~Al~aL~~~ 577 (634)
T TIGR03463 507 GTFHGVMGLRAAGASPDD-MALQRAAAWLRSYQRADGGWGEVYESC-L-QARYVEGKQSQAVMTSWALLALAEA 577 (634)
T ss_pred HHHHHHHHHHHcCCCcCc-HHHHHHHHHHHHccCCCCCccCccCcc-c-cccccCCCCCcHHHHHHHHHHHHHc
Confidence 599999999999986534 479999999999999999998754221 1 11122 22456677888888753
No 16
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=98.52 E-value=2.1e-07 Score=59.02 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=35.8
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHH--HHHHHHhcccCCCCCCcc
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHA--AKLLINSQLGEGDFPQQE 49 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rg--v~~Ll~~Q~~dG~W~e~~ 49 (87)
.|.+..|++||++|...+... + .+|. ++||++.|++||+|....
T Consensus 20 ~~~~~~T~~al~aL~~~g~~~-~---~~~~~~~~~L~~~q~~dGg~~~~~ 65 (113)
T PF13249_consen 20 PSDVWDTAFALLALAALGEEP-D---RDRAAAVEWLLSQQNPDGGWGSNP 65 (113)
T ss_dssp -BEHHHHHHHHHHHHHHTSHH-C---HHHHHHHHHHHHHB-TTSGBBSST
T ss_pred CCCHHHHHHHHHHHHHhCCcc-c---HHHHHHHHHHHHhCCCCCCccCCC
Confidence 478899999999999999875 2 5555 999999999999998643
No 17
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=98.50 E-value=3.1e-07 Score=64.26 Aligned_cols=66 Identities=27% Similarity=0.418 Sum_probs=54.2
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHH
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEY 77 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y 77 (87)
.+.+..|+|++.+|+..+... +...++++++||++.|++||+|..... ..++.|...|.|.||+.|
T Consensus 235 ~~~~~~~~~~~~aL~~~~~~~-~~~~~~~~~~~L~~~q~~~G~w~~~~~---------~~~~~~~t~~al~aL~~~ 300 (300)
T cd00688 235 LSDSCYTEWAAYALLALGKLG-DLEDAEKLVKWLLSQQNEDGGFSSKPG---------KSYDTQHTVFALLALSLY 300 (300)
T ss_pred cCchHHHHHHHHHHHHHhhhc-CcccHHHHHHHHHhccCCCCCcCcCCC---------CCCcchhhHHHHHHHhcC
Confidence 367889999999999998652 223699999999999999999986553 456788899999999864
No 18
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=98.49 E-value=7.4e-08 Score=61.08 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=34.8
Q ss_pred chHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCC
Q 043877 3 SNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFP 46 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~ 46 (87)
+.+..|++++++|...+..+. .+.++|+++||+++|++||+|+
T Consensus 70 ~~~~~t~~~l~~l~~~~~~~~-~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 70 PDVYTTYVALAALELLGRPDD-EEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp BSHHHHHHHHHHHHHHT-GGC-HTTHCCHHHHHHHTB-TTSSB-
T ss_pred ccHHHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHhcCCCCCCC
Confidence 467889999999999888753 2469999999999999999995
No 19
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=98.38 E-value=1.2e-06 Score=64.76 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=48.7
Q ss_pred chHhhHHHHHHHHHHhCCC-CCCchHHHHHHHHHHHhcccCCCCCCccccccccccc--cccCCCchhHHhHHHHHH
Q 043877 3 SNLVQTSWAMMALIHAGQM-ERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNC--MSHYPTYRNIFPTWALAE 76 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~-~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~--~i~Y~~Y~~~fPl~ALg~ 76 (87)
|.+-=||+++.+|..++.. ..++.+|+||++||+++|++||+|.+... .+.+.. .+....+...|-|.||.+
T Consensus 78 ~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~--~~~~~~~~~~~~~~~~TA~vl~aL~~ 152 (292)
T cd02897 78 GSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFREVGR--VFHKAMQGGVDDEVALTAYVLIALLE 152 (292)
T ss_pred cchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCc--ccChhhcCCCCCCcchHHHHHHHHHh
Confidence 4455699999999998741 22456899999999999999999986432 111100 012233456788888865
No 20
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=98.31 E-value=1.3e-06 Score=71.81 Aligned_cols=66 Identities=24% Similarity=0.175 Sum_probs=49.1
Q ss_pred CchHhhHHHHHHHHHHhCCCC-CCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHH
Q 043877 2 RSNLVQTSWAMMALIHAGQME-RGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEY 77 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~-~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y 77 (87)
.|++..|+.+|+||...+... ...++|+||++||++.|++||+|... +.++| .|...|-|.||..+
T Consensus 435 ~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~---------wg~~y-~YgT~~al~aL~~~ 501 (621)
T TIGR01787 435 PPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGR---------WGVNY-TYGTGFVLSALAAA 501 (621)
T ss_pred CCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCccc---------CCCCC-chhHHHHHHHHHHh
Confidence 367789999999999987521 11257999999999999999999521 11222 45677888888865
No 21
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=98.27 E-value=2.4e-06 Score=70.52 Aligned_cols=64 Identities=17% Similarity=0.086 Sum_probs=50.2
Q ss_pred chHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHH
Q 043877 3 SNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEY 77 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y 77 (87)
|++.-|+-+|+||...+....+ ++|+|||+||+++|++||+|- |.+ .++| .|-..+.|.||+.+
T Consensus 449 ~~~d~Ta~~l~al~~~g~~~~~-~~i~rav~~L~~~Q~~dG~W~-----g~w----g~~~-~Y~T~~al~aL~~~ 512 (635)
T TIGR01507 449 PTADVTARVLECLGSFGYDDAW-PVIERAVEYLKREQEPDGSWF-----GRW----GVNY-LYGTGAVLSALKAV 512 (635)
T ss_pred CCccHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHccCCCCCCc-----cCC----CCcc-ccHHHHHHHHHHHc
Confidence 6788899999999998865533 479999999999999999992 211 1232 57788999999854
No 22
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=98.22 E-value=5.7e-06 Score=61.58 Aligned_cols=71 Identities=24% Similarity=0.264 Sum_probs=50.2
Q ss_pred chHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc--------------ccCCCCCCccccccccccccccCCCchhH
Q 043877 3 SNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQ--------------LGEGDFPQQELTRAFMGNCMSHYPTYRNI 68 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q--------------~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~ 68 (87)
|.+.-|+++++||..++..+...+.++||++||+++| .+||+|+-+...+.++ ..--..
T Consensus 23 ~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~-------~~~~Ta 95 (348)
T cd02889 23 SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYP-------DSDDTA 95 (348)
T ss_pred CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCC-------CCCChH
Confidence 5678899999999999873324568999999999999 6888897443221111 112346
Q ss_pred HhHHHHHHHHHh
Q 043877 69 FPTWALAEYRSK 80 (87)
Q Consensus 69 fPl~ALg~y~~~ 80 (87)
+-++||..+...
T Consensus 96 ~~l~al~~~~~~ 107 (348)
T cd02889 96 EALKALLRLQKK 107 (348)
T ss_pred HHHHHHHHhhcc
Confidence 888888776543
No 23
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=98.14 E-value=3.4e-06 Score=70.74 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcccccc---ccccccccCCCchhHHhHHHHHHH
Q 043877 8 TSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRA---FMGNCMSHYPTYRNIFPTWALAEY 77 (87)
Q Consensus 8 TaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~---f~~~~~i~Y~~Y~~~fPl~ALg~y 77 (87)
|.+|+.||.++|....+.++++|||.||++.|++||+|+|.+.... |...-.=+-..-...+.++||...
T Consensus 620 t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~ 692 (760)
T KOG0497|consen 620 TWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMA 692 (760)
T ss_pred HHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccccccccccccccchhHHHHHHHHHhc
Confidence 7899999999998776778899999999999999999999874332 222111111222345677777654
No 24
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=98.11 E-value=7.9e-06 Score=61.14 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=50.0
Q ss_pred hHhhHHHHHHHHHHhCCC-CCCchHHHHHHHHHHHhcccCCCCCCccccccccccccc--c---CCCchhHHhHHHHHHH
Q 043877 4 NLVQTSWAMMALIHAGQM-ERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMS--H---YPTYRNIFPTWALAEY 77 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~-~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i--~---Y~~Y~~~fPl~ALg~y 77 (87)
.+==||+++.+|..++.. ..+++.|+||++||+++|++||+|.+..+. +++...- . .+.-..-|-+.||.+.
T Consensus 80 s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~--~~~~m~gg~~~~~~~~~lTA~vl~aL~~~ 157 (297)
T cd02896 80 STWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPV--IHREMTGGVEGSEGDVSLTAFVLIALQEA 157 (297)
T ss_pred chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCc--cChhccCCccccCCCccchHHHHHHHHhh
Confidence 344589999999988642 224568999999999999999999986422 1111110 0 1223356889999887
Q ss_pred HH
Q 043877 78 RS 79 (87)
Q Consensus 78 ~~ 79 (87)
.+
T Consensus 158 ~~ 159 (297)
T cd02896 158 RS 159 (297)
T ss_pred hc
Confidence 54
No 25
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=97.98 E-value=2.8e-05 Score=54.32 Aligned_cols=64 Identities=23% Similarity=0.309 Sum_probs=47.0
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHH
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEY 77 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y 77 (87)
.+.+..|++||.+|..++.... .+.++|+++||.+.|++||+|. . + ..-+.|....-+.||..+
T Consensus 137 ~~~~~~t~~al~aL~~~~~~~~-~~~~~~~~~~l~~~q~~~g~~~-~---~-------~~~~~~~t~~~~~aL~~~ 200 (300)
T cd00688 137 ESDVRLTAYALIALALLGKLDP-DPLIEKALDYLLSCQNYDGGFG-P---G-------GESHGYGTACAAAALALL 200 (300)
T ss_pred CCcccHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHhcCCCCcC-C---C-------ccccHHHHHHHHHHHHHc
Confidence 3677899999999999997652 3579999999999999999991 1 1 112444455666666554
No 26
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=97.92 E-value=2.9e-05 Score=63.68 Aligned_cols=65 Identities=23% Similarity=0.208 Sum_probs=48.3
Q ss_pred CchHhhHHHHHHHHHHhCCCCCC-----chHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHH
Q 043877 2 RSNLVQTSWAMMALIHAGQMERG-----PTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAE 76 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~-----~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~ 76 (87)
.|++..|+.+|+||...+....+ .++|+||++||++.|++||+|.... |+ ...|-..|.|.||..
T Consensus 447 ~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~w--g~--------~~~Y~T~~al~AL~~ 516 (634)
T cd02892 447 PPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRW--GV--------CYIYGTWFALEALAA 516 (634)
T ss_pred CCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccC--CC--------ccHHHHHHHHHHHHH
Confidence 36788899999999998865422 1479999999999999999995322 11 123556677888865
No 27
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=97.83 E-value=5.4e-05 Score=55.38 Aligned_cols=55 Identities=25% Similarity=0.426 Sum_probs=45.1
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHH
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYR 78 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~ 78 (87)
+++-||+|||+|+..+ +.+...+.|+||++.|+.+|+|.-.. ..+..|.||++|.
T Consensus 191 ~vEtTaYaLLa~l~~~----~~~~~~~iv~WL~~qr~~~Ggf~STQ----------------dTvvaL~AL~~Ya 245 (246)
T PF07678_consen 191 DVETTAYALLALLKRG----DLEEASPIVRWLISQRNSGGGFGSTQ----------------DTVVALQALAEYA 245 (246)
T ss_dssp HHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHCTTTTSSTSSHH----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHhcCCCCccCcHH----------------HHHHHHHHHHHHh
Confidence 5789999999999994 33468999999999999999996332 2568899999884
No 28
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=97.79 E-value=4.2e-05 Score=58.53 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=27.5
Q ss_pred HhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccc
Q 043877 17 HAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTR 52 (87)
Q Consensus 17 aag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G 52 (87)
+.+.+. ..+++.|||+||+++|.+||||++-++..
T Consensus 59 ~t~d~~-y~~A~~rgld~LL~aQypnGGWPQf~p~~ 93 (290)
T TIGR02474 59 QEKNAK-YRDAARKGIEYLLKAQYPNGGWPQFYPLK 93 (290)
T ss_pred hcCchh-HHHHHHHHHHHHHhhhCCCCCcCcccCCc
Confidence 334433 35689999999999999999999877643
No 29
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=97.66 E-value=0.00021 Score=51.69 Aligned_cols=76 Identities=17% Similarity=0.078 Sum_probs=48.9
Q ss_pred CchHhhHHHHHHHHHHhCCC-CCCchHHHHHHHHHHHhcccCCCCCCccccccccccc-cccCCCchhHHhHHHHHHHH
Q 043877 2 RSNLVQTSWAMMALIHAGQM-ERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNC-MSHYPTYRNIFPTWALAEYR 78 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~-~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~-~i~Y~~Y~~~fPl~ALg~y~ 78 (87)
.|.+--|++++.+|..++.. ..+++.|+||++||++.|++||+|.+....- ..+.. .-....+...|-+.+|++..
T Consensus 76 ~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~-~~~~~~~~~~~~~~tA~al~~L~~~g 153 (282)
T cd02891 76 SGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVI-HREMKGGVDDSVSLTAYVLIALAEAG 153 (282)
T ss_pred CCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCcc-CHhhcCCcCCCcchHHHHHHHHHHhc
Confidence 45677899999999987542 1134579999999999999999997643211 11000 01122234567777777643
No 30
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=97.52 E-value=0.00011 Score=53.74 Aligned_cols=47 Identities=21% Similarity=0.261 Sum_probs=37.0
Q ss_pred chHhhHHHHHHHHHHhCCCC-CCchHHHHHHHHHHHhcccCCCCCCcc
Q 043877 3 SNLVQTSWAMMALIHAGQME-RGPTPLHHAAKLLINSQLGEGDFPQQE 49 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~-~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~ 49 (87)
|.+==||+++..|..+..-- -|+..|.++++||+++|++||.|.+..
T Consensus 25 ~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~ 72 (246)
T PF07678_consen 25 SSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDG 72 (246)
T ss_dssp BBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SS
T ss_pred ccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCC
Confidence 44556999999999886532 356789999999999999999998764
No 31
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=97.29 E-value=0.0002 Score=54.83 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=20.6
Q ss_pred chHHHHHHHHHHHhcccCCCCCCcccc
Q 043877 25 PTPLHHAAKLLINSQLGEGDFPQQELT 51 (87)
Q Consensus 25 ~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~ 51 (87)
.+++.|||+||++.|-++|||+|-++.
T Consensus 61 ~~A~~kgl~ylL~aQypnGGWPQ~yP~ 87 (289)
T PF09492_consen 61 REAFLKGLDYLLKAQYPNGGWPQFYPL 87 (289)
T ss_dssp HHHHHHHHHHHHHHS-TTS--BSECS-
T ss_pred HHHHHHHHHHHHHhhCCCCCCCccCCC
Confidence 358999999999999999999998654
No 32
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=97.10 E-value=0.0018 Score=52.99 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcc-cccc-ccccccccCCCchhHHhHHHHHHHHHhhcC
Q 043877 7 QTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQE-LTRA-FMGNCMSHYPTYRNIFPTWALAEYRSKFQS 83 (87)
Q Consensus 7 qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~-~~G~-f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~~ 83 (87)
.+++.++||+++|.+ +..++.+.||.+.|.+||.|.+.. +.|. .|-..-++-+.|. +||||+.+|.+.-++
T Consensus 299 D~~~~a~Al~~~G~~----~~a~~~l~~l~~~q~~~G~~~~~~~~dG~~~~~~~~~Q~D~~g--~~l~al~~y~~~t~d 371 (616)
T TIGR01577 299 DASYIATALDRAGYH----DRVDRFFRWAMQTQSRDGSWQQRYYLNGRLAPLQWGLQIDETG--SILWAMDQHYRLTND 371 (616)
T ss_pred cHHHHHHHHHHCCCH----HHHHHHHHHHHHhhCcCCCcceEEecCCCCCCCCCCccccchh--HHHHHHHHHHHHHCC
Confidence 467899999999976 359999999999999999997764 4444 3312245555544 699999988765443
No 33
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=97.03 E-value=0.0023 Score=47.04 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=36.3
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCC-CC
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEG-DF 45 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG-~W 45 (87)
+|++..|+||+.+|...+..+ . ..+++.++||+++|..+| ++
T Consensus 172 es~~~~t~~av~sL~~l~~~~-~-~~~~~~~~~L~~~q~~~ggGf 214 (286)
T cd02890 172 ESHGGYTFCAVASLALLGRLD-L-IDKERLLRWLVERQLASGGGF 214 (286)
T ss_pred CCCccHhHHHHHHHHHcCCCc-c-cCHHHHHHHHHHhCCCCCCCc
Confidence 488899999999999999875 3 359999999999999987 44
No 34
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=96.91 E-value=0.00097 Score=37.00 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcccCCCCCCcc
Q 043877 28 LHHAAKLLINSQLGEGDFPQQE 49 (87)
Q Consensus 28 i~Rgv~~Ll~~Q~~dG~W~e~~ 49 (87)
+++.++||++.|++||+|....
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~ 24 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRP 24 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSST
T ss_pred HHHHHHHHHHHCCCCCCCCCCC
Confidence 7899999999999999997653
No 35
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=96.90 E-value=0.0019 Score=48.18 Aligned_cols=43 Identities=21% Similarity=0.125 Sum_probs=37.4
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCC
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFP 46 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~ 46 (87)
.|++..|.||+.+|...+..+. . .+++.++||+++|.++|++.
T Consensus 174 es~~~~t~cavasL~llg~~~~-~-~~~~~~~~L~~~q~~~GGf~ 216 (287)
T cd02894 174 ESHAGQIFCCVGALAILGSLDL-I-DRDRLGWWLCERQLPSGGLN 216 (287)
T ss_pred CCchhHHHHHHHHHHHcCcccc-c-CHHHHHHHHHHhCCCCCCcC
Confidence 4788999999999999998752 3 49999999999999999884
No 36
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=96.65 E-value=0.0028 Score=39.91 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=24.9
Q ss_pred chHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhccc
Q 043877 3 SNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLG 41 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~ 41 (87)
+.++.|+.++.+|+..+....+ +.++||++||+++|..
T Consensus 71 ~~~~~t~~~~~~l~~~~~~~~~-~~~~r~~~wi~~~~~~ 108 (109)
T PF13243_consen 71 EYVSMTAAAIAALALAGVYPDD-EAVERGLEWILSHQLD 108 (109)
T ss_dssp -HHHHHHHHHHHHHHHHTT--H-HHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCC
Confidence 3456777777777766654434 5799999999999753
No 37
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=96.62 E-value=0.0041 Score=45.69 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=37.4
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
.+++..|.+|+.+|-..+....++..+++.++||.+.|++||+|...
T Consensus 74 ~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~ 120 (286)
T cd02890 74 DPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGD 120 (286)
T ss_pred CccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccC
Confidence 47788999999999999862012224788999999999999999654
No 38
>PLN02592 ent-copalyl diphosphate synthase
Probab=95.97 E-value=0.006 Score=52.25 Aligned_cols=42 Identities=21% Similarity=0.433 Sum_probs=29.8
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
.+=.||| .|++-.-.....| ..-..++||++.|++||+|+.+
T Consensus 96 S~YDTAW--VAmVp~~~g~~~p-~FP~~~~wIl~nQ~~DGsWG~~ 137 (800)
T PLN02592 96 SAYDTAW--VALVEDINGSGTP-QFPSSLQWIANNQLSDGSWGDA 137 (800)
T ss_pred cHHHhHH--HhhcccCCCCCCC-CCHHHHHHHHHccCCCCCCCCC
Confidence 3458999 5555433222134 3667999999999999999875
No 39
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=95.69 E-value=0.028 Score=40.50 Aligned_cols=54 Identities=28% Similarity=0.373 Sum_probs=40.4
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHH
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEY 77 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y 77 (87)
.+..|+++|++.+..+. ++...+-++||++.++.+|+|.. .....+.|.||+.|
T Consensus 229 ~~~a~a~all~~~~~~~----~~~~~~~~~~L~~~~~~~~~~~s----------------Tq~t~~al~AL~~y 282 (282)
T cd02891 229 RVEATAYALLALLKLGD----LEEAGPIAKWLAQQRNSGGGFLS----------------TQDTVVALQALAAY 282 (282)
T ss_pred hHHHHHHHHHHHHhcCC----hhhHHHHHHHHHHcCCCCCCccc----------------HHHHHHHHHHHHhC
Confidence 45778899998886552 23588899999997888888853 33467888888765
No 40
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=95.49 E-value=0.038 Score=41.18 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 6 VQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 6 ~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
+=+|++.++|+ +..+ . ..+++.++||++.|++||+|...
T Consensus 132 ty~a~~~l~ll--~~~~-~-i~~~~~~~~l~~~q~~dGGF~~~ 170 (287)
T cd02894 132 SYCAVLCLTLL--GKLD-L-IDVDKAVDYLLSCYNFDGGFGCR 170 (287)
T ss_pred HHHHHHHHHHh--CCcc-h-hhHHHHHHHHHHcCCCCCCcCCC
Confidence 44566666666 3332 2 34899999999999999999865
No 41
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=95.47 E-value=0.032 Score=42.37 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=36.4
Q ss_pred CchHhhHHHHHHHHHHhCCCCC-CchHHHHHHHHHHHhcccCCCCCC
Q 043877 2 RSNLVQTSWAMMALIHAGQMER-GPTPLHHAAKLLINSQLGEGDFPQ 47 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~-~~~~i~Rgv~~Ll~~Q~~dG~W~e 47 (87)
+|+.-.|-||+-+|...+.... +...+++.++||+++|..+||+.-
T Consensus 191 Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~g 237 (307)
T cd02895 191 ESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNG 237 (307)
T ss_pred CccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCC
Confidence 4677889999999988877531 123589999999999999998853
No 42
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=95.30 E-value=0.058 Score=45.28 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcc-ccccccccccccCCCchhHHhHHHHHHHHH
Q 043877 7 QTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQE-LTRAFMGNCMSHYPTYRNIFPTWALAEYRS 79 (87)
Q Consensus 7 qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~-~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~ 79 (87)
..++.++||+++|+.+ ..+|..+||.+.|.+||.|.+.+ +.|. +...-++-+-|. +||+++-++.+
T Consensus 299 D~a~~a~AL~~~G~~~----~a~~~~~~l~~~~~~~G~~lq~y~vdG~-~~~~~iQlD~~g--~~i~~~~~l~~ 365 (648)
T TIGR01535 299 DLYQVANAFLAAGDVD----SALRSLDYLAKVQQDNGMFPQNSWVDGK-PYWTGIQLDETA--FPILLAYRLHR 365 (648)
T ss_pred hHHHHHHHHHHCCCHH----HHHHHHHHHHHHhccCCCcCceeccCCC-CCCCCccccHHH--HHHHHHHHHHH
Confidence 4678899999999763 58999999999999999998773 4454 111236667766 78888866544
No 43
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=95.29 E-value=0.039 Score=45.41 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHh
Q 043877 8 TSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSK 80 (87)
Q Consensus 8 TaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~ 80 (87)
|+-|+-+|-..|+.+..+..+++++.||...|.+||+|.+....=+.+ ...-. +.=-..++.|||..+-+.
T Consensus 383 ~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~-~~~~t-~~sl~~~~~wal~~~~~a 453 (517)
T COG1657 383 TSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDP-VYTGT-ESSLLVQTNWALIALLTA 453 (517)
T ss_pred hhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCccccccccccc-ccccc-cchhhcchhHHHHHHHHh
Confidence 677888888888876444579999999999999999999865332211 00111 221234788888887544
No 44
>PLN02279 ent-kaur-16-ene synthase
Probab=94.98 E-value=0.032 Score=47.79 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=39.5
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHH
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYR 78 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~ 78 (87)
.+=.|||+-|-=-- +... .| ..-..++||++.|.+||+|+.+.... | ...-..-...=-+.||-++.
T Consensus 54 s~YDTAWvamv~~~-~~~~-~p-~Fp~~~~wil~nQ~~dGsWg~~~~~~-~----~~~D~ll~TlAcvlAL~~w~ 120 (784)
T PLN02279 54 SSYDTAWVAMVPSP-NSQQ-AP-LFPECVKWLLENQLEDGSWGLPHDHP-L----LVKDALSSTLASILALKKWG 120 (784)
T ss_pred chhhhHHHHhcccC-CCCC-CC-CChHHHHHHHhcCCCCCCCCCCCCCc-c----hhHHhhHHHHHHHHHHHHHh
Confidence 34579997553222 2222 34 36679999999999999998753111 1 11112223445677777664
No 45
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=93.76 E-value=0.18 Score=38.48 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 8 TSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 8 TaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
|=||+.+|--.+..+ ...+++.++||++.|+.||+|...
T Consensus 136 ty~a~a~l~LL~~~~--~i~~~~~~~~i~scq~~dGGF~~~ 174 (316)
T PLN03201 136 SYCALCCLSLLKRLD--KINVEKAVDYIVSCKNFDGGFGCT 174 (316)
T ss_pred HHHHHHHHHHhCccc--hhHHHHHHHHHHHhcCCCCCcCCC
Confidence 444444443334332 235899999999999999999864
No 46
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=93.65 E-value=0.12 Score=39.40 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=38.7
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcccccccccccc
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCM 59 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~ 59 (87)
+|++-.|.||+-+|.-.+..+. - ..++-++||+++|..+||+.-. .+.++..||
T Consensus 178 esh~g~T~caiaaL~llg~~~~-~-d~~~l~~wL~~rQ~~~GGf~gr--p~k~~D~cy 231 (316)
T PLN03201 178 ESHAGQIFCCVGALAITGSLHH-V-DKDLLGWWLCERQVKSGGLNGR--PEKLPDVCY 231 (316)
T ss_pred CCccceehHHHHHHHHcCcccc-C-CHHHHHHHHHHhCCCCCCcCCC--CCCCCchHH
Confidence 5778889999999988886532 1 2566789999999988988522 334555443
No 47
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=93.51 E-value=0.2 Score=38.07 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=34.6
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcc
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQE 49 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~ 49 (87)
+++.-.|=.|+..|--.+..+.+....++.++||++.|+.||+|....
T Consensus 141 e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~ 188 (307)
T cd02895 141 ENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGP 188 (307)
T ss_pred CccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCccCCC
Confidence 356667777777777666543111238899999999999999998654
No 48
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=93.19 E-value=0.23 Score=37.46 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=36.2
Q ss_pred chHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 3 SNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
+.+..|-|+|.+|.-.+... +....+|.++||.+.|++||++...
T Consensus 25 ~~~~~~y~~l~~l~lL~~~~-~~~~~~~~i~~i~~~q~~~GgF~~~ 69 (299)
T cd02893 25 SRPWLLYWILHSLELLGEEL-DQSYADDVISFLRRCQNPSGGFGGG 69 (299)
T ss_pred ccHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 56778899999998888733 3345789999999999999988653
No 49
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=92.69 E-value=0.31 Score=36.78 Aligned_cols=43 Identities=26% Similarity=0.273 Sum_probs=34.9
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhccc-CCCCC
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLG-EGDFP 46 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~-dG~W~ 46 (87)
.++.-.|.||+-+|--.+..+ .. .+++.++||+++|.+ +||+.
T Consensus 172 e~h~~yTfcavasL~llg~~~-~~-d~~~l~~wl~~~q~~~~GGf~ 215 (299)
T cd02893 172 EAHGGYTFCALAALAILGKPD-KL-DLESLLRWLVARQMRFEGGFQ 215 (299)
T ss_pred CCCccHHHHHHHHHHHcCCcc-cc-CHHHHHHHHHhhcCCCCCCcC
Confidence 367778999999999888764 23 489999999999987 78774
No 50
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=91.64 E-value=0.17 Score=42.19 Aligned_cols=62 Identities=19% Similarity=0.226 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcccccc-ccccccccCCCchhHHhHH
Q 043877 7 QTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRA-FMGNCMSHYPTYRNIFPTW 72 (87)
Q Consensus 7 qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~-f~~~~~i~Y~~Y~~~fPl~ 72 (87)
.++++.+||+++|..+ ...+..+||.+.|.++|.|.+-+.... ....-...+..|.+.|||+
T Consensus 289 D~~~~~~AL~~~G~~~----~a~~~f~~l~~~~~~~~~~~~~y~~~g~~~~~~w~~~~~~~~~~pv~ 351 (612)
T COG3387 289 DASYAALALLAIGYKK----EALRFFEFLPDVQTPNGKLYHKYSIDGSDLAESWLPVSGYYNSFPVR 351 (612)
T ss_pred cHHHHHHHHHHcCCHH----HHHHHHHHHHHhhCCCCceeeEEecCCCccccccccccCCCCCCceE
Confidence 4678899999999763 488999999999999998877655444 4444455577788888863
No 51
>PLN02710 farnesyltranstransferase subunit beta
Probab=89.83 E-value=0.95 Score=36.62 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=39.4
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcccccccccccc
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCM 59 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~ 59 (87)
+++.-.|-||+-+|.-.+..+. -.+++-++||+++|..+||+.-. ++-.+..||
T Consensus 217 EaH~gyTfcavAsL~LLg~l~~--id~~~l~~WL~~rQ~~~GGF~GR--~nKl~D~CY 270 (439)
T PLN02710 217 EAHGGYTFCGLAAMILINEVDR--LDLPSLINWVVFRQGVEGGFQGR--TNKLVDGCY 270 (439)
T ss_pred CCchHHHHHHHHHHHHcCCccc--cCHHHHHHHHHHhcCcCCCcCCC--CCCCCCchh
Confidence 4677889999999988776542 23889999999999988988532 233445554
No 52
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.10 E-value=0.59 Score=36.70 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcccCCCCCC
Q 043877 27 PLHHAAKLLINSQLGEGDFPQ 47 (87)
Q Consensus 27 ~i~Rgv~~Ll~~Q~~dG~W~e 47 (87)
.|+|=++||+.+|..+||+.-
T Consensus 229 ~~erlirWli~RQ~~sgGfqG 249 (347)
T KOG0367|consen 229 KVERLIRWLIQRQVSSGGFQG 249 (347)
T ss_pred CHHHHHHHHHHHhhccCCcCC
Confidence 399999999999999998853
No 53
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=87.77 E-value=0.44 Score=36.69 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHhcccCCCC
Q 043877 26 TPLHHAAKLLINSQLGEGDF 45 (87)
Q Consensus 26 ~~i~Rgv~~Ll~~Q~~dG~W 45 (87)
.+++|||+||++.|..+|+|
T Consensus 137 ~Ai~Rgid~ILktQ~~~gg~ 156 (290)
T TIGR02474 137 TAVTKGIECILKTQVVQNGK 156 (290)
T ss_pred HHHHHHHHHHHHhhcccCCc
Confidence 57999999999999888744
No 54
>PLN02710 farnesyltranstransferase subunit beta
Probab=85.66 E-value=1.9 Score=34.87 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=35.0
Q ss_pred chHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCC
Q 043877 3 SNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQ 47 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e 47 (87)
+.+..|=|+|.+|.-.+..- +++.-++-|+||.+.|.+||++..
T Consensus 70 ~r~~~~Yw~L~sL~lLg~~l-~~~~~~~ii~~l~~cQ~~dGGFgg 113 (439)
T PLN02710 70 NRPWLCYWILHSIALLGESL-DDELENDTIDFLSRCQDPNGGYGG 113 (439)
T ss_pred hhHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHhcCCCcCCCC
Confidence 55677889999998888743 334568899999999999998864
No 55
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=85.14 E-value=1.7 Score=33.99 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=34.4
Q ss_pred hHhhHHHHHHHHHHhCCCCCC--------chHHHHHHHHHHHhcccCCCCCCcccccc
Q 043877 4 NLVQTSWAMMALIHAGQMERG--------PTPLHHAAKLLINSQLGEGDFPQQELTRA 53 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~--------~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~ 53 (87)
.|.-+|.|.|||-=....... ..+|++-++.|++.|.+||-++..+.||-
T Consensus 185 sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~GNiySTgl 242 (326)
T PF01122_consen 185 SVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFGNIYSTGL 242 (326)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BSSTTTHHH
T ss_pred CccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCcccchhhHHH
Confidence 467789999999866543222 12566677777899999998887777765
No 56
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=85.13 E-value=1.7 Score=39.84 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=44.7
Q ss_pred HhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhhcC
Q 043877 5 LVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKFQS 83 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~~ 83 (87)
++-||+||++++...+.+. +---++||.+.++..|||... ...+-.|-||.+|..+...
T Consensus 1158 VE~tsYaLL~~~~~~~~~~----~~pivrWl~~qr~~~GGf~ST----------------QdTvvalqaLs~y~~~~~~ 1216 (1436)
T KOG1366|consen 1158 VETTAYALLAYLLLAQVDY----ALPIVRWLVEQRNALGGFSST----------------QDTVVALQALSEYAALSHT 1216 (1436)
T ss_pred ccchHHHHHHHHHhcccCc----CchhHhhhhhhhcccCceeeh----------------HHHHHHHHHHHHhhhhccc
Confidence 5789999999998776532 223689999999999999643 3466788889988766543
No 57
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=82.03 E-value=1.6 Score=39.99 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHhCCCC-CCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 6 VQTSWAMMALIHAGQME-RGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 6 ~qTaWAL~aLlaag~~~-~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
-=||++|.-+-.+...- -|+..|.+++.||..+|.+||++.+.
T Consensus 1003 WLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e~ 1046 (1436)
T KOG1366|consen 1003 WLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFKEV 1046 (1436)
T ss_pred HHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEecc
Confidence 45889999988886543 25668999999999999999998764
No 58
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.45 E-value=2.8 Score=31.92 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcccccc
Q 043877 6 VQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRA 53 (87)
Q Consensus 6 ~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~ 53 (87)
..|=+|+-+|--.+... ++.+-++|+++-|+.|||+..+...|+
T Consensus 212 E~t~ya~r~lelL~~k~----~i~~~~rFI~slqN~nGGFRRS~~~GI 255 (274)
T COG1689 212 EPTFYALRGLELLGGKY----CISDHIRFIRSLQNQNGGFRRSYELGI 255 (274)
T ss_pred chHHHHHhHHHHHccCc----CchHHHHHHHHhhcCCCCeeeeEeccc
Confidence 45667777776666542 477889999999999999998887777
No 59
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=76.22 E-value=6.8 Score=29.38 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=48.5
Q ss_pred hHhhHHHHHHHHH---HhCCCCCC--chHHHHHHHHHHHh-cccCCC--CCCcccccc---ccccccccCCCchhHHhHH
Q 043877 4 NLVQTSWAMMALI---HAGQMERG--PTPLHHAAKLLINS-QLGEGD--FPQQELTRA---FMGNCMSHYPTYRNIFPTW 72 (87)
Q Consensus 4 t~~qTaWAL~aLl---aag~~~~~--~~~i~Rgv~~Ll~~-Q~~dG~--W~e~~~~G~---f~~~~~i~Y~~Y~~~fPl~ 72 (87)
..|=||.+.-||+ ..|..+.. .+.++|+.+.|+++ -.+||. +........ |...-......|-..+=|+
T Consensus 248 etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~~~~~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~ 327 (336)
T PF07470_consen 248 ETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGKLGLKGVCGGTPVGGYQGRDYNVNDPYGDGYFLL 327 (336)
T ss_dssp EHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSSSBBTCEBETTTS-SHHTEEEECCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCCeEEeeeEeecCCCCCCCCCCCCCcCcHHHHHHH
Confidence 3466777777774 35554211 24799999999999 778886 443211111 1112233445789999999
Q ss_pred HHHHHHHhh
Q 043877 73 ALAEYRSKF 81 (87)
Q Consensus 73 ALg~y~~~~ 81 (87)
|+.++.|.+
T Consensus 328 A~~e~~r~~ 336 (336)
T PF07470_consen 328 ALAEYERLL 336 (336)
T ss_dssp HHHHHHCGH
T ss_pred HHHHHHHhC
Confidence 999998753
No 60
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=75.27 E-value=3.6 Score=30.85 Aligned_cols=61 Identities=18% Similarity=0.062 Sum_probs=39.6
Q ss_pred hCCCCCCchHHHHHHHHHHHhcc--cCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhhcC
Q 043877 18 AGQMERGPTPLHHAAKLLINSQL--GEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKFQS 83 (87)
Q Consensus 18 ag~~~~~~~~i~Rgv~~Ll~~Q~--~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~~ 83 (87)
.|.++ -.+.+++|++||.++.. .+|+|--..-.|. + .--+-+.|.+.|-|.||+.+ +..++
T Consensus 36 ~g~~~-~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~-~--~~~~~~~Y~~af~l~ala~~-~~tg~ 98 (346)
T PF07221_consen 36 LGRPE-YLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG-P--LDPQKDLYDQAFALLALAEA-RATGD 98 (346)
T ss_dssp TTSHH-HHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE-E--EE--EEHHHHHHHHHHHHHH-HCTT-
T ss_pred cCchh-HHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC-C--CccccchHHHHHHHHHHHHH-HHhCC
Confidence 45443 24578999999999885 5587854433333 2 22345788999999999995 44443
No 61
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=75.24 E-value=3.9 Score=22.62 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=12.7
Q ss_pred CchHHHHHHHHHHHhcc
Q 043877 24 GPTPLHHAAKLLINSQL 40 (87)
Q Consensus 24 ~~~~i~Rgv~~Ll~~Q~ 40 (87)
||+ |+||+.++++.-+
T Consensus 22 Dpd-vqrgL~~ll~~lk 37 (42)
T PF07849_consen 22 DPD-VQRGLGFLLAFLK 37 (42)
T ss_pred CHH-HHHHHHHHHHHHH
Confidence 665 9999999997543
No 62
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=74.26 E-value=5.3 Score=30.08 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 8 TSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 8 TaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
.+|+|+.+......+.-.+.++++++|+++.+.++|.|+..
T Consensus 170 I~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~ 210 (343)
T cd04794 170 ILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSS 210 (343)
T ss_pred HHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 34555555443222212357999999999998888989754
No 63
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=72.19 E-value=9.7 Score=28.53 Aligned_cols=72 Identities=13% Similarity=-0.005 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhC----CCCCCchHHHHHHHHHHHhccc-C-CCCCCccc-cccccccccccCCCchhHHhHHHHHHHHHh
Q 043877 8 TSWAMMALIHAG----QMERGPTPLHHAAKLLINSQLG-E-GDFPQQEL-TRAFMGNCMSHYPTYRNIFPTWALAEYRSK 80 (87)
Q Consensus 8 TaWAL~aLlaag----~~~~~~~~i~Rgv~~Ll~~Q~~-d-G~W~e~~~-~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~ 80 (87)
+|..+-+|..+. .++ -.+..+++++||.++-.+ + |+|-+... .|. ...-..+.|.+.|-|+||+.+.+.
T Consensus 55 ~ar~i~~~a~a~~~~~~~~-~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~---~~~~~~~l~~~a~~l~ala~~~~a 130 (384)
T cd00249 55 QARQVYCFAVAYLLGWRPE-WLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGR---PVDATKDLYSHAFALLAAAQAAKV 130 (384)
T ss_pred ecHHHHHHHHHHHhcCChh-HHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCC---CcccccchHHHHHHHHHHHHHHHh
Confidence 355555665442 332 134678999999987654 5 88865543 443 111234789999999999998665
Q ss_pred hcC
Q 043877 81 FQS 83 (87)
Q Consensus 81 ~~~ 83 (87)
.++
T Consensus 131 t~d 133 (384)
T cd00249 131 GGD 133 (384)
T ss_pred cCC
Confidence 544
No 64
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.23 E-value=9.4 Score=30.21 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=32.0
Q ss_pred chHhhHH--HHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcccccccccccc
Q 043877 3 SNLVQTS--WAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCM 59 (87)
Q Consensus 3 st~~qTa--WAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~ 59 (87)
|+.-+|- -|-+||+..-+..+ .+++=+.||.++|.+.||..-. +.-++.+||
T Consensus 201 aHag~tFcalaalalL~~Ld~ls---~~E~l~~Wl~~RQ~ssgGl~GR--~nKl~D~CY 254 (342)
T COG5029 201 AHAGYTFCALAALALLGKLDKLS---DVEKLIRWLAERQLSSGGLNGR--SNKLVDTCY 254 (342)
T ss_pred hccchHHHHHHHHHHHhcccccc---hHHHHHHHHHHcccccCCcCCC--cccCccchh
Confidence 4555554 44455555444442 2899999999999999966322 122555654
No 65
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=68.38 E-value=8.1 Score=31.06 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=45.0
Q ss_pred HHHHHHHHH-hCCCCCCchHHHHHHHHHHHh-cccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhh
Q 043877 9 SWAMMALIH-AGQMERGPTPLHHAAKLLINS-QLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKF 81 (87)
Q Consensus 9 aWAL~aLla-ag~~~~~~~~i~Rgv~~Ll~~-Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~ 81 (87)
++|+-+++- .+.. .+.++-|++|+-+. ..++|+|.--- ..=-+..-=+++.|.+.|.|+|++.+.+..
T Consensus 63 ~fA~A~~~g~~~~~---~~~v~hG~~y~~~~~R~~~gg~~~~~--~~dg~~~Dat~d~Y~haFallA~A~~a~a~ 132 (388)
T COG2942 63 CFAVAGLLGWRGPW---LDAVAHGIAYLARVGRDPEGGWYFAL--DNDGGPVDATKDLYGHAFALLAAAHAATAG 132 (388)
T ss_pred HHHHHHHhcCCccH---HHHHHhHHHHHHhcCcCCCCCeEEEe--cCCCCcccccHhHHHHHHHHHHHHHHHhcC
Confidence 355656554 2332 24799999999954 46678884221 111134566789999999999999986543
No 66
>PLN03005 beta-fructofuranosidase
Probab=66.86 E-value=20 Score=30.15 Aligned_cols=75 Identities=21% Similarity=0.208 Sum_probs=42.5
Q ss_pred HhhHHHHHHHHHHhCCCCC------CchHHHHHHHHHHHhcccCCCCCCcccccccccccccc-------CCCchhHHhH
Q 043877 5 LVQTSWAMMALIHAGQMER------GPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSH-------YPTYRNIFPT 71 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~------~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~-------Y~~Y~~~fPl 71 (87)
|.-+-|=+++|-++..... .| .++||+++|++--..+| +..-...=+=-++|+|. |+.|-++.=.
T Consensus 203 VDS~LWWIIllraY~k~tgD~s~~e~p-evQrgi~lil~lcLa~~-Fd~~ptLlvpDgs~miDRrMgv~G~pLeiQaLfy 280 (550)
T PLN03005 203 VDSGFWWIILLRAYTKSTGDLTLSETP-ECQKGMKLILSLCLAEG-FDTFPTLLCADGCSMIDRRMGVYGYPIEIQALFF 280 (550)
T ss_pred cchhhHHHHHHHHHHhhccchhhhhCh-HHHHHHHHHHHHhcccc-cCCCceEeccCCccccccccccCCccHHHHHHHH
Confidence 5567787888887755111 24 59999999977544433 21111000011133333 5677777777
Q ss_pred HHHHHHHHhh
Q 043877 72 WALAEYRSKF 81 (87)
Q Consensus 72 ~ALg~y~~~~ 81 (87)
+||-.++..+
T Consensus 281 ~ALR~~~~~L 290 (550)
T PLN03005 281 MALRSALSML 290 (550)
T ss_pred HHHHHHHHhc
Confidence 8887776533
No 67
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.83 E-value=11 Score=29.77 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 8 TSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 8 TaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
+|-.++.|+. .- |.+-.+-+|+||++-|+-||+++--
T Consensus 160 ~al~ilsllg--~~--~~~~~e~~vdyl~kCqnyeGGFg~~ 196 (342)
T COG5029 160 IALSILSLLG--DL--DKELFEGAVDYLKKCQNYEGGFGLC 196 (342)
T ss_pred HHHHHHHHHh--hc--chhhhHHHHHHHHHhhccCCcccCC
Confidence 3445555554 22 3345778999999999999999743
No 68
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=63.39 E-value=29 Score=28.65 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=40.8
Q ss_pred HhhHHHHHHHHHHhCCCCCCc---------hHHHHHHHHHHHhcccCCCCCCccc--cccccccccccCCC
Q 043877 5 LVQTSWAMMALIHAGQMERGP---------TPLHHAAKLLINSQLGEGDFPQQEL--TRAFMGNCMSHYPT 64 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~~~---------~~i~Rgv~~Ll~~Q~~dG~W~e~~~--~G~f~~~~~i~Y~~ 64 (87)
...|.|...+|+.+|....+. +..++=++|++++.++.|-.+|+.. +|..-+.+-+.++.
T Consensus 533 ~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~~~~~~Gll~Eqvd~~~g~~~g~~Pl~wSH 603 (616)
T TIGR01577 533 ILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMDHRTDLGLLPEQVDKETGKPAWAVPLGWSH 603 (616)
T ss_pred HHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHhcCCCCCCCccccCCCCCCCCCcCCcccch
Confidence 368999999999988654110 0245568888999899999999853 55544444444433
No 69
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.39 E-value=12 Score=29.53 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccc
Q 043877 9 SWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTR 52 (87)
Q Consensus 9 aWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G 52 (87)
+.+..+|...|.+. |.+.|+++++-+.+.-..|| |-.+....
T Consensus 159 v~v~~~L~~~G~~~-d~~~i~~~l~~~e~~Y~GdG-WY~DG~~~ 200 (361)
T PF10022_consen 159 VMVEAFLKKVGEEY-DEERIDYDLERIEEWYLGDG-WYSDGPEF 200 (361)
T ss_pred HHHHHHHHHcCCCC-cHHHHHHHHHHHHHHhccCC-ccccCCcc
Confidence 45677889998877 56789999999999999999 86655433
No 70
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.33 E-value=16 Score=29.59 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCC
Q 043877 9 SWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQ 47 (87)
Q Consensus 9 aWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e 47 (87)
=|.|-+|.-.+..- |.+..+++|++|..-|.+.||++-
T Consensus 104 YWil~sl~lL~~~~-dd~v~~~~i~fL~~c~~PeGGfgG 141 (423)
T KOG0365|consen 104 YWILNSLALLDEWL-DDDVKENAIDFLFTCQGPEGGFGG 141 (423)
T ss_pred HHHHHHHHHhcCcC-CHHHHHHHHHHHHhcCCCCCCCCC
Confidence 37777777777655 335799999999999999998863
No 71
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.83 E-value=17 Score=28.44 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCC
Q 043877 9 SWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFP 46 (87)
Q Consensus 9 aWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~ 46 (87)
=|.+.||--.++.++ ..-++-|.|+++-|++||++.
T Consensus 51 YWg~tal~ll~~le~--~~~eeiv~~v~~C~~~~GGfa 86 (329)
T KOG0366|consen 51 YWGLTALDLLGQLER--MSREEIVSFVLSCQHEDGGFA 86 (329)
T ss_pred hhhhhHHHHhcccch--hhHHHHHHHHHheecCCCCcC
Confidence 388888888887763 247789999999999999885
No 72
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.40 E-value=14 Score=28.93 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCC
Q 043877 8 TSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQ 47 (87)
Q Consensus 8 TaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e 47 (87)
+|-+.++|+.--+ ...+++||+|+++--+-||+++-
T Consensus 148 ~av~~L~lLg~ld----~~nve~aVd~~~~CyN~DGGFG~ 183 (329)
T KOG0366|consen 148 CAVACLALLGKLD----TINVEKAVDFVLSCYNFDGGFGC 183 (329)
T ss_pred HHHHHHHHHhhHH----HhhHHHHHHHHHhhcccCCCcCC
Confidence 4444445543322 24599999999999999999975
No 73
>PLN02973 beta-fructofuranosidase
Probab=52.79 E-value=41 Score=28.39 Aligned_cols=70 Identities=13% Similarity=0.100 Sum_probs=41.7
Q ss_pred HhhHHHHHHHHHHhCCCCC------CchHHHHHHHHHHHhc------------ccCCCCCCccccccccccccccCCCch
Q 043877 5 LVQTSWAMMALIHAGQMER------GPTPLHHAAKLLINSQ------------LGEGDFPQQELTRAFMGNCMSHYPTYR 66 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~------~~~~i~Rgv~~Ll~~Q------------~~dG~W~e~~~~G~f~~~~~i~Y~~Y~ 66 (87)
|.-+-|=+++|-++..... .| .++||++||++-- .+||+.--+...|++ =|+.|-
T Consensus 224 VDS~LWWIIllraY~k~TgD~s~~e~p-evQrgi~lil~lcL~~~Fd~~ptLlVpDgs~miDrrMgv~------G~pLei 296 (571)
T PLN02973 224 VDSGFWWIILLRAYTKSTGDSSLADMP-ECQKGIRLILSLCLSEGFDTFPTLLCADGCCMIDRRMGVY------GYPIEI 296 (571)
T ss_pred cchhhHHHHHHHHHHHhccchhhhhcH-HHHHHHHHHHHHhcccccCCCceEeccCCccccccccccC------CccHHH
Confidence 5567787888887755211 24 5999999999932 233322222223331 256677
Q ss_pred hHHhHHHHHHHHHhh
Q 043877 67 NIFPTWALAEYRSKF 81 (87)
Q Consensus 67 ~~fPl~ALg~y~~~~ 81 (87)
+..=.+||-.++..+
T Consensus 297 QaLfy~ALR~a~~~L 311 (571)
T PLN02973 297 QALFFMALRCALLLL 311 (571)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777778887776533
No 74
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=50.24 E-value=31 Score=17.62 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHH
Q 043877 8 TSWAMMALIHAGQMERGPTPLHHAAKLLIN 37 (87)
Q Consensus 8 TaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~ 37 (87)
-.++..||...+. | +.+|+.||++
T Consensus 15 ~~~~~~AL~~~~~---d---~~~A~~~L~~ 38 (38)
T cd00194 15 REEARKALRATNN---N---VERAVEWLLE 38 (38)
T ss_pred HHHHHHHHHHhCC---C---HHHHHHHHhC
Confidence 3567777777663 1 7888999863
No 75
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=47.92 E-value=64 Score=25.55 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=21.0
Q ss_pred CchHHHHHHHHHHHhcccCCCCCCcccc
Q 043877 24 GPTPLHHAAKLLINSQLGEGDFPQQELT 51 (87)
Q Consensus 24 ~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~ 51 (87)
+.+.++|.++.+.+.|.+||.++...+.
T Consensus 167 ~~~l~~~~l~~~~~~q~~~G~~p~~~P~ 194 (509)
T PF05592_consen 167 DAALYRKWLRDFADSQRPDGLLPSVAPS 194 (509)
T ss_dssp -HHHHHHHHHHHHGGTTTSTT-SSBSS-
T ss_pred cHHHHHHHHHHHHHhhcccCCceEEecc
Confidence 4457999999999999999988765544
No 76
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=45.48 E-value=3.1 Score=26.87 Aligned_cols=20 Identities=25% Similarity=0.524 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhcccCCCCCC
Q 043877 28 LHHAAKLLINSQLGEGDFPQ 47 (87)
Q Consensus 28 i~Rgv~~Ll~~Q~~dG~W~e 47 (87)
|.-|---|++.+++||.||.
T Consensus 69 L~~gQ~vliE~rn~DGtWPr 88 (88)
T PF14836_consen 69 LYDGQVVLIEERNEDGTWPR 88 (88)
T ss_dssp --TTEEEEEEE--TTS--TT
T ss_pred CcCCCEEEEEeeccCCCCCC
Confidence 44444456677799999983
No 77
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=45.10 E-value=17 Score=30.04 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHhcccCCCCCCc
Q 043877 26 TPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 26 ~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
.+.-.|.+||+..|.+.|||+-.
T Consensus 380 aaFyaAadWlV~NQd~kGGW~~p 402 (594)
T KOG3760|consen 380 AAFYAAADWLVKNQDDKGGWSVP 402 (594)
T ss_pred HHHHHHHHHHhhCCCCCCCCcch
Confidence 46778999999999999999743
No 78
>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.
Probab=44.86 E-value=6.4 Score=20.29 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=6.6
Q ss_pred HHHhcccCCCCCCc
Q 043877 35 LINSQLGEGDFPQQ 48 (87)
Q Consensus 35 Ll~~Q~~dG~W~e~ 48 (87)
+-.+|++||+|..+
T Consensus 5 I~~s~RpDGt~RK~ 18 (27)
T PF09282_consen 5 IPASQRPDGTWRKE 18 (27)
T ss_dssp E--EE-TTS-EE--
T ss_pred cCcccCCCCCcccc
Confidence 44689999999644
No 79
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=44.68 E-value=40 Score=17.43 Aligned_cols=19 Identities=26% Similarity=0.177 Sum_probs=11.5
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHH
Q 043877 11 AMMALIHAGQMERGPTPLHHAAKLL 35 (87)
Q Consensus 11 AL~aLlaag~~~~~~~~i~Rgv~~L 35 (87)
+..||.+.+. .+++|+.||
T Consensus 19 ~~~AL~~~~~------nve~A~~~L 37 (37)
T PF00627_consen 19 AREALRACNG------NVERAVDWL 37 (37)
T ss_dssp HHHHHHHTTT------SHHHHHHHH
T ss_pred HHHHHHHcCC------CHHHHHHhC
Confidence 4556655543 177788876
No 80
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=43.88 E-value=15 Score=28.39 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHhccc-C---CCCCCccc
Q 043877 26 TPLHHAAKLLINSQLG-E---GDFPQQEL 50 (87)
Q Consensus 26 ~~i~Rgv~~Ll~~Q~~-d---G~W~e~~~ 50 (87)
+++.|||++|++.|.. + -.|.+++-
T Consensus 132 ~A~~kgi~ciL~tQi~~~g~~t~W~qQhD 160 (289)
T PF09492_consen 132 AAVDKGIDCILKTQIRQNGKLTAWCQQHD 160 (289)
T ss_dssp HHHHHHHHHHHHHS-EETTEE----SEE-
T ss_pred HHHHHHHHHHHHHHcccCCCCCchhhccC
Confidence 5799999999999972 2 35877653
No 81
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=42.47 E-value=37 Score=26.64 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=31.0
Q ss_pred hHhhHHHHHHHHHHhCCCCCC-chHHHHHHHHHHHhcccCCCCCCc
Q 043877 4 NLVQTSWAMMALIHAGQMERG-PTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~-~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
..-.|+-||.||+.++.+... .-.-.++.+.|++.. ++|.|...
T Consensus 236 NiySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i-~~G~F~nP 280 (326)
T PF01122_consen 236 NIYSTGLAMQALSVSPSPPSESEWNCQKALDALLKEI-SQGAFQNP 280 (326)
T ss_dssp STTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHH-TTTTT-SH
T ss_pred chhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh-hcCCCCCH
Confidence 456799999999999986521 124889999999954 68988653
No 82
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=41.91 E-value=67 Score=26.03 Aligned_cols=53 Identities=11% Similarity=0.002 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhcccCCCCCCccccccccccc------ccc---CCCchhHHhHHHHHHHHHhhcCC
Q 043877 26 TPLHHAAKLLINSQLGEGDFPQQELTRAFMGNC------MSH---YPTYRNIFPTWALAEYRSKFQSP 84 (87)
Q Consensus 26 ~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~------~i~---Y~~Y~~~fPl~ALg~y~~~~~~~ 84 (87)
+.+++-|+.|.+.|++|| | .|.|+..- ... -..|...--|.||--|.+.-++.
T Consensus 83 ~~~d~~V~~l~~~Q~~dG-Y-----l~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~ 144 (520)
T PF07944_consen 83 AKADEIVDELAAAQQPDG-Y-----LGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNE 144 (520)
T ss_pred HHHHHHHHHHHHhccCCc-e-----ecccccccccccccCCCCCccceehHhHHHHHHHHHHHHHCcH
Confidence 357889999999999998 3 33322211 000 12566666666776665555544
No 83
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=41.15 E-value=1.5e+02 Score=22.71 Aligned_cols=75 Identities=20% Similarity=0.236 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHhCCCCCCch--HHHHHHHHHH-HhcccCCCC---CCcccccc-ccccccccCC-CchhHHhHHHHHHH
Q 043877 6 VQTSWAMMALIHAGQMERGPT--PLHHAAKLLI-NSQLGEGDF---PQQELTRA-FMGNCMSHYP-TYRNIFPTWALAEY 77 (87)
Q Consensus 6 ~qTaWAL~aLlaag~~~~~~~--~i~Rgv~~Ll-~~Q~~dG~W---~e~~~~G~-f~~~~~i~Y~-~Y~~~fPl~ALg~y 77 (87)
++.+|++.|++..-..+ |+. .+++-..|.+ =+-++||-- .--...|+ .|+.+.-.-+ ....+|-+++|-.+
T Consensus 66 t~~Swi~~g~l~~L~~~-d~~a~~Lr~~~~f~IvPmlNPDGvv~Gn~Rc~~~G~DLNR~w~~p~~~~~P~i~~~k~l~~~ 144 (278)
T cd06906 66 TNASWVMKGTLEFLMSS-SPTAQSLRESYIFKIVPMLNPDGVINGNHRCSLSGEDLNRQWQSPNPELHPTIYHTKGLLQY 144 (278)
T ss_pred chHHHHHHHHHHHHhCC-CHHHHHHHHhCcEEEEeeecCccceecccccCCCCCCCCCCCCCCCcccChHHHHHHHHHHH
Confidence 57889999999854333 331 1222222222 344889832 22234688 8887653222 23467889999988
Q ss_pred HHhh
Q 043877 78 RSKF 81 (87)
Q Consensus 78 ~~~~ 81 (87)
.+..
T Consensus 145 l~~~ 148 (278)
T cd06906 145 LAAI 148 (278)
T ss_pred HHHh
Confidence 6644
No 84
>COG2427 Uncharacterized conserved protein [Function unknown]
Probab=39.48 E-value=36 Score=23.39 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=17.7
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHhcc
Q 043877 12 MMALIHAGQMERGPTPLHHAAKLLINSQL 40 (87)
Q Consensus 12 L~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~ 40 (87)
+++|+.+-. ||+ |+||+.+|++.-.
T Consensus 116 l~~Llk~Lk---DPd-vq~~Lg~lls~lK 140 (148)
T COG2427 116 LLGLLKALK---DPD-VQRGLGFLLSILK 140 (148)
T ss_pred HHHHHHHcC---CHH-HHHHHHHHHHHHH
Confidence 556665542 665 9999999997543
No 85
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=36.73 E-value=51 Score=16.71 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=13.5
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHH
Q 043877 10 WAMMALIHAGQMERGPTPLHHAAKLLI 36 (87)
Q Consensus 10 WAL~aLlaag~~~~~~~~i~Rgv~~Ll 36 (87)
+|+.||...+. | +.+++.||+
T Consensus 17 ~a~~aL~~~~~---d---~~~A~~~L~ 37 (37)
T smart00165 17 EALKALRAANG---N---VERAAEYLL 37 (37)
T ss_pred HHHHHHHHhCC---C---HHHHHHHHC
Confidence 56666666552 1 777888874
No 86
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=35.40 E-value=35 Score=18.38 Aligned_cols=13 Identities=0% Similarity=0.212 Sum_probs=10.7
Q ss_pred CchHHHHHHHHHH
Q 043877 24 GPTPLHHAAKLLI 36 (87)
Q Consensus 24 ~~~~i~Rgv~~Ll 36 (87)
|..+|.+||.|++
T Consensus 10 Dg~aiDqgiay~L 22 (34)
T PF06376_consen 10 DGKAIDQGIAYML 22 (34)
T ss_pred CcchhhHHHHHHH
Confidence 4457999999987
No 87
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=35.30 E-value=46 Score=31.35 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=33.2
Q ss_pred hHhhHHHHHHHHHHhCCCCCC--------chHHHHHHHHHHHhcccCCCCC
Q 043877 4 NLVQTSWAMMALIHAGQMERG--------PTPLHHAAKLLINSQLGEGDFP 46 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~--------~~~i~Rgv~~Ll~~Q~~dG~W~ 46 (87)
-.+||+-.+|.|+.......+ .+.++.++.=|+++|..||+++
T Consensus 1169 c~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F~ 1219 (1621)
T COG2373 1169 CAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAFG 1219 (1621)
T ss_pred chhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCcee
Confidence 368999999999986543212 2369999999999999998654
No 88
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.82 E-value=32 Score=27.24 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcccCCCCCCcc
Q 043877 28 LHHAAKLLINSQLGEGDFPQQE 49 (87)
Q Consensus 28 i~Rgv~~Ll~~Q~~dG~W~e~~ 49 (87)
-++.+.|+++.|+-||++++..
T Consensus 176 ~ek~~~yI~~~q~YdgGfg~~p 197 (347)
T KOG0367|consen 176 KEKLIGYIRSSQRYDGGFGQHP 197 (347)
T ss_pred HHHHHHHHHHhhccccccccCC
Confidence 5689999999999999998754
No 89
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=33.20 E-value=21 Score=13.44 Aligned_cols=6 Identities=33% Similarity=0.590 Sum_probs=4.0
Q ss_pred CCCCCC
Q 043877 42 EGDFPQ 47 (87)
Q Consensus 42 dG~W~e 47 (87)
.|+|++
T Consensus 3 gG~Wgq 8 (8)
T PF03991_consen 3 GGGWGQ 8 (8)
T ss_pred CCcCCC
Confidence 477874
No 90
>PLN02592 ent-copalyl diphosphate synthase
Probab=27.40 E-value=96 Score=27.21 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=33.2
Q ss_pred HhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-ccCCCCCCcccccc---ccc
Q 043877 5 LVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQ-LGEGDFPQQELTRA---FMG 56 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q-~~dG~W~e~~~~G~---f~~ 56 (87)
...|.-+|+||..-... ++.|+||+.||.+.- .-+++-.+..++|. ||.
T Consensus 146 ll~TLAcvlAL~~w~~~---~~~i~rGl~fi~~nl~~~~~~~~~~~pvGFeIifP~ 198 (800)
T PLN02592 146 LINTLACVVALKSWNLH---PEKCEKGMSFFRENICKLEDENAEHMPIGFEVAFPS 198 (800)
T ss_pred HHhHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHhhcCCCCCCCceEEeeHHH
Confidence 47899999999986554 346999999998644 21222344556665 665
No 91
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=26.85 E-value=1.5e+02 Score=25.03 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=36.6
Q ss_pred HhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcccccc
Q 043877 5 LVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRA 53 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~ 53 (87)
+.-|-|-...+++.|..+ ...+-++||+++++++|--+|+--.++
T Consensus 537 ~i~t~Wl~~~~~~~g~~~----~a~~ll~~l~~~a~~~gll~EQv~~~~ 581 (612)
T COG3387 537 IITTLWLSEYYLALGRLD----EAKKLLEWLLAFASPLGLLPEQVDDGS 581 (612)
T ss_pred eeehhHHHHHHHHccchH----HHHHHHHHHHHhcCCCCCcchhhcCCC
Confidence 356889999999999763 377889999999999999988754443
No 92
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=25.66 E-value=1.9e+02 Score=18.60 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhcccCCCCC
Q 043877 27 PLHHAAKLLINSQLGEGDFP 46 (87)
Q Consensus 27 ~i~Rgv~~Ll~~Q~~dG~W~ 46 (87)
.|+.||.|++......-++-
T Consensus 57 IiEnAVefiLrSMtR~tgF~ 76 (88)
T PF15144_consen 57 IIENAVEFILRSMTRSTGFM 76 (88)
T ss_pred HHHHHHHHHHHHhhcccCce
Confidence 68999999996654433354
No 93
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=22.00 E-value=1.7e+02 Score=22.21 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhC-CCCCCchHHHHHHHHHHHhcccC--CCCCC
Q 043877 8 TSWAMMALIHAG-QMERGPTPLHHAAKLLINSQLGE--GDFPQ 47 (87)
Q Consensus 8 TaWAL~aLlaag-~~~~~~~~i~Rgv~~Ll~~Q~~d--G~W~e 47 (87)
-+|+|.-+...+ ..+...++++++++|+.+....+ |.|..
T Consensus 177 i~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~ 219 (382)
T cd04793 177 PLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWP 219 (382)
T ss_pred HHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 346665555555 22224567999999999877443 45654
No 94
>PRK13739 conjugal transfer protein TraP; Provisional
Probab=20.18 E-value=60 Score=23.88 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=8.9
Q ss_pred HH-HHHHHHHHhC
Q 043877 8 TS-WAMMALIHAG 19 (87)
Q Consensus 8 Ta-WAL~aLlaag 19 (87)
|+ |++|||+..+
T Consensus 122 ~~lW~~lAl~y~~ 134 (198)
T PRK13739 122 TALWATLALMYTS 134 (198)
T ss_pred HHHHHHHHHHHHH
Confidence 45 8899998644
Done!