Query 043877
Match_columns 87
No_of_seqs 114 out of 629
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 15:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 99.9 2.2E-23 7.5E-28 170.4 8.8 83 2-86 646-728 (732)
2 2sqc_A Squalene-hopene cyclase 99.9 2.6E-23 8.9E-28 166.8 8.3 79 2-82 550-629 (631)
3 2wy7_A Complement C3D fragment 99.2 6.5E-11 2.2E-15 87.0 6.9 60 4-83 236-295 (310)
4 1qqf_A Protein (complement C3D 99.0 7.2E-10 2.5E-14 80.0 6.5 57 4-80 220-276 (277)
5 1hzf_A Complement factor C4A; 98.7 2.7E-08 9.4E-13 74.9 7.3 60 4-82 305-364 (367)
6 2pn5_A TEP1R, thioester-contai 98.5 1.2E-07 4E-12 80.8 6.6 61 2-82 1046-1106(1325)
7 2hr0_B Complement C3 alpha' ch 98.4 2.8E-07 9.6E-12 76.4 6.0 60 4-83 481-540 (915)
8 2h6f_B Protein farnesyltransfe 98.4 1.9E-07 6.5E-12 72.9 3.9 44 2-47 246-290 (437)
9 3dss_B Geranylgeranyl transfer 98.3 6.1E-07 2.1E-11 67.5 4.1 45 2-48 188-232 (331)
10 2sqc_A Squalene-hopene cyclase 98.1 7.7E-06 2.6E-10 65.6 7.5 64 3-77 444-507 (631)
11 1w6k_A Lanosterol synthase; cy 98.1 3.3E-06 1.1E-10 69.1 5.1 45 5-49 586-633 (732)
12 1gxm_A Pectate lyase; mechanis 98.0 1.5E-06 5.3E-11 66.3 1.9 47 5-51 73-122 (332)
13 1r76_A Pectate lyase; A-helica 97.9 7.7E-06 2.6E-10 63.9 3.7 44 4-47 291-335 (408)
14 2h6f_B Protein farnesyltransfe 97.9 1.5E-05 5.3E-10 62.1 5.0 40 6-49 204-243 (437)
15 4acq_A Alpha-2-macroglobulin; 97.9 8.9E-06 3.1E-10 70.7 3.9 65 3-83 1181-1247(1451)
16 1r76_A Pectate lyase; A-helica 97.8 1.2E-05 4E-10 62.8 4.1 46 6-51 149-200 (408)
17 3dss_B Geranylgeranyl transfer 97.8 1.3E-05 4.4E-10 60.2 4.1 46 2-49 140-185 (331)
18 1n4q_B Geranyltransferase type 97.8 1.8E-05 6E-10 60.8 3.9 44 1-46 216-261 (377)
19 1hzf_A Complement factor C4A; 97.6 5.3E-05 1.8E-09 56.9 4.3 44 5-48 120-164 (367)
20 1qqf_A Protein (complement C3D 97.5 0.00019 6.6E-09 51.4 5.8 47 3-49 65-113 (277)
21 1n4q_B Geranyltransferase type 97.4 0.00023 8E-09 54.5 5.5 45 3-48 120-164 (377)
22 2wy7_A Complement C3D fragment 97.4 0.00033 1.1E-08 51.1 5.8 47 3-49 81-129 (310)
23 4fxk_B Complement C4-A alpha c 97.3 0.00074 2.5E-08 54.7 7.9 59 5-82 583-641 (767)
24 3cu7_A Complement C5; Mg domai 97.2 0.0012 4.1E-08 57.8 8.0 60 4-83 1247-1306(1676)
25 4acq_A Alpha-2-macroglobulin; 96.9 0.0012 4E-08 57.7 5.8 73 3-77 1014-1089(1451)
26 2b39_A C3; thioester, immune d 96.9 0.0015 5.1E-08 57.2 5.9 59 4-82 1228-1286(1661)
27 3q7a_B Farnesyltransferase bet 96.6 0.0012 4E-08 53.0 3.4 41 5-47 196-236 (520)
28 2bb6_A TCII, TC II, transcobal 96.5 0.0013 4.5E-08 51.3 2.9 51 3-53 176-233 (414)
29 3prx_B Cobra venom factor; imm 96.1 0.00093 3.2E-08 59.1 0.1 59 4-82 1210-1268(1642)
30 3sdr_A Alpha-bisabolene syntha 96.1 0.0024 8.4E-08 53.3 2.6 43 4-49 82-124 (817)
31 3s9v_A Abietadiene synthase, c 96.1 0.0023 7.9E-08 53.2 2.1 43 4-49 55-97 (785)
32 2hr0_B Complement C3 alpha' ch 95.9 0.0088 3E-07 49.6 5.0 46 3-48 326-373 (915)
33 3p5p_A Taxadiene synthase; cla 95.7 0.0031 1.1E-07 52.3 1.3 43 4-49 32-76 (764)
34 3pya_A ENT-copalyl diphosphate 95.5 0.0054 1.8E-07 50.7 2.2 40 4-48 33-72 (727)
35 2pn5_A TEP1R, thioester-contai 95.3 0.027 9.3E-07 48.1 5.8 46 3-48 899-946 (1325)
36 2bb6_A TCII, TC II, transcobal 95.3 0.011 3.8E-07 46.1 3.2 43 4-47 227-270 (414)
37 1gxm_A Pectate lyase; mechanis 95.1 0.0069 2.4E-07 46.1 1.6 30 26-55 169-202 (332)
38 4fxk_B Complement C4-A alpha c 94.6 0.048 1.7E-06 44.0 5.3 45 4-48 396-441 (767)
39 3q7a_B Farnesyltransferase bet 94.6 0.067 2.3E-06 42.8 5.9 67 3-77 87-153 (520)
40 2pmv_A Gastric intrinsic facto 94.2 0.011 3.8E-07 45.9 0.7 49 4-52 151-209 (399)
41 2b39_A C3; thioester, immune d 93.1 0.11 3.7E-06 45.7 5.1 46 3-48 1073-1120(1661)
42 3prx_B Cobra venom factor; imm 93.1 0.017 5.7E-07 51.3 0.0 70 7-78 1061-1138(1642)
43 2pmv_A Gastric intrinsic facto 92.8 0.11 3.8E-06 40.3 4.3 43 3-47 203-246 (399)
44 3cu7_A Complement C5; Mg domai 92.6 0.11 3.7E-06 45.7 4.3 46 3-48 1074-1121(1676)
45 1ulv_A Glucodextranase; GH fam 91.8 0.34 1.1E-05 41.3 6.2 64 7-78 333-399 (1020)
46 2dna_A Unnamed protein product 87.4 0.72 2.5E-05 27.5 3.6 27 11-43 37-63 (67)
47 1whc_A RSGI RUH-027, UBA/UBX 3 85.1 1.4 4.8E-05 25.5 4.1 30 8-42 23-52 (64)
48 1wgn_A UBAP1, ubiquitin associ 84.8 1.5 5E-05 26.0 4.0 26 11-42 36-61 (63)
49 1lf6_A Glucoamylase; (alpha/al 84.6 0.81 2.8E-05 36.9 3.7 37 8-48 345-381 (684)
50 2cpw_A CBL-interacting protein 84.0 1.3 4.3E-05 25.7 3.5 28 9-41 34-61 (64)
51 2crn_A Ubash3A protein; compac 83.5 1.5 5E-05 25.5 3.7 28 9-41 24-51 (64)
52 1vek_A UBP14, ubiquitin-specif 81.8 2 6.8E-05 26.2 3.9 28 9-41 44-71 (84)
53 2dag_A Ubiquitin carboxyl-term 80.1 2.5 8.6E-05 25.1 3.9 30 9-43 24-53 (74)
54 3ren_A Glycosyl hydrolase, fam 79.0 2 6.7E-05 32.7 3.8 63 10-77 286-348 (350)
55 1wji_A Tudor domain containing 78.8 2.8 9.5E-05 24.2 3.7 27 11-43 26-52 (63)
56 3pmm_A Putative cytoplasmic pr 78.0 1.9 6.5E-05 32.4 3.5 40 8-47 235-284 (382)
57 2fba_A Glucoamylase Glu1; (alp 77.7 2.8 9.6E-05 32.8 4.5 71 8-80 71-160 (492)
58 3dra_B Geranylgeranyltransfera 76.8 4.5 0.00016 31.0 5.4 46 3-48 92-141 (390)
59 3k11_A Putative glycosyl hydro 76.6 1.5 5.3E-05 34.1 2.7 40 8-47 268-315 (445)
60 3rrs_A Cellobiose phosphorylas 76.3 6.6 0.00022 32.5 6.5 72 8-85 369-442 (822)
61 2knz_A Ubiquilin-4; cytoplasm, 76.1 3.3 0.00011 22.9 3.4 24 10-39 28-51 (53)
62 1wiv_A UBP14, ubiquitin-specif 75.4 4.1 0.00014 24.1 3.8 26 10-41 45-70 (73)
63 1vg5_A RSGI RUH-014, rhomboid 75.0 2.9 0.0001 25.0 3.1 26 11-42 46-71 (73)
64 1vej_A Riken cDNA 4931431F19; 73.5 4.1 0.00014 24.4 3.5 26 11-42 47-72 (74)
65 2dah_A Ubiquilin-3; UBA domain 73.4 5.6 0.00019 22.2 3.9 25 11-41 27-51 (54)
66 2ekk_A UBA domain from E3 ubiq 72.5 3.4 0.00012 22.1 2.7 23 9-38 24-46 (47)
67 2dak_A Ubiquitin carboxyl-term 71.9 3.5 0.00012 23.5 2.8 27 9-41 24-50 (63)
68 3qde_A Cellobiose phosphorylas 71.7 6.3 0.00021 32.5 5.3 60 25-85 374-435 (811)
69 2dai_A Ubadc1, ubiquitin assoc 71.1 6.1 0.00021 24.0 4.0 27 10-42 45-71 (83)
70 1nc5_A Hypothetical protein YT 68.2 5.7 0.0002 29.3 4.0 40 8-47 215-263 (373)
71 2gz6_A N-acetyl-D-glucosamine 66.6 11 0.00039 27.1 5.3 55 26-83 77-133 (388)
72 1veg_A NEDD8 ultimate buster-1 65.2 7.3 0.00025 23.9 3.4 25 10-40 45-69 (83)
73 1wr1_B Ubiquitin-like protein 63.3 8.6 0.0003 21.8 3.3 22 11-38 35-56 (58)
74 2bwb_A Ubiquitin-like protein 61.3 7.5 0.00026 20.9 2.7 21 11-37 25-45 (46)
75 2dkl_A Trinucleotide repeat co 60.7 8.4 0.00029 23.5 3.1 14 28-41 49-62 (85)
76 2g3q_A Protein YBL047C; endocy 60.6 8.9 0.0003 19.9 2.9 22 11-38 21-42 (43)
77 1v7w_A Chitobiose phosphorylas 60.6 9.3 0.00032 30.7 4.2 32 8-44 351-382 (807)
78 3dra_B Geranylgeranyltransfera 60.3 12 0.00043 28.5 4.7 72 4-76 31-106 (390)
79 2jy5_A Ubiquilin-1; UBA, alter 60.0 6.7 0.00023 21.6 2.4 23 10-38 29-51 (52)
80 2lbc_A Ubiquitin carboxyl-term 52.9 19 0.00064 22.8 3.9 27 10-41 19-45 (126)
81 1ify_A HHR23A, UV excision rep 51.4 12 0.0004 20.3 2.4 22 11-38 25-46 (49)
82 3e6u_A LANC-like protein 1; al 49.6 2.8 9.6E-05 31.5 -0.5 23 26-48 254-276 (411)
83 3gt5_A N-acetylglucosamine 2-e 48.5 17 0.0006 26.8 3.7 51 26-79 75-127 (402)
84 2cwb_A Chimera of immunoglobul 48.4 22 0.00075 22.7 3.7 24 9-38 82-105 (108)
85 2vn4_A Glucoamylase; hydrolase 48.1 21 0.00073 28.5 4.3 35 8-46 55-99 (599)
86 1wj7_A Hypothetical protein (R 46.1 27 0.00091 22.3 3.8 33 10-48 56-88 (104)
87 1fp3_A N-acyl-D-glucosamine 2- 41.7 58 0.002 23.5 5.6 55 26-83 82-140 (402)
88 3jyu_A Ubiquitin carboxyl-term 40.7 3.5 0.00012 29.0 -1.2 19 31-49 212-230 (231)
89 3p5p_A Taxadiene synthase; cla 39.5 37 0.0013 28.1 4.6 46 5-56 84-134 (764)
90 3sdr_A Alpha-bisabolene syntha 38.8 35 0.0012 28.4 4.4 32 5-39 132-163 (817)
91 4a3p_A Ubiquitin carboxyl-term 36.1 4.4 0.00015 28.2 -1.2 16 33-48 202-217 (217)
92 2yrv_A AT-rich interactive dom 34.6 25 0.00087 22.9 2.4 22 26-48 84-105 (117)
93 4ae4_A Ubiquitin-associated pr 33.7 41 0.0014 21.4 3.2 24 11-40 25-48 (118)
94 3pya_A ENT-copalyl diphosphate 32.5 44 0.0015 27.6 4.0 49 5-56 81-133 (727)
95 2b4n_A Gastric inhibitory poly 32.1 32 0.0011 18.6 2.1 22 26-47 17-38 (42)
96 3gox_A Restriction endonucleas 31.6 20 0.00067 25.5 1.5 16 24-39 184-199 (200)
97 3s9v_A Abietadiene synthase, c 30.9 48 0.0016 27.5 4.0 32 5-39 105-136 (785)
98 2jg0_A Periplasmic trehalase; 30.1 1.1E+02 0.0038 23.8 5.8 37 7-47 130-166 (535)
99 1qaz_A Protein (alginate lyase 29.1 43 0.0015 25.1 3.1 68 10-82 192-262 (351)
100 1rk8_C PYM protein, within the 27.5 11 0.00036 21.9 -0.4 15 34-48 12-26 (58)
101 2z07_A Putative uncharacterize 26.4 79 0.0027 23.0 4.2 37 7-48 35-72 (420)
102 1dv0_A DNA repair protein HHR2 25.9 32 0.0011 18.3 1.5 24 10-39 20-43 (47)
103 3pmm_A Putative cytoplasmic pr 24.3 1.1E+02 0.0038 22.6 4.7 57 27-83 30-86 (382)
104 3h7l_A Endoglucanase; dehydrog 23.5 1.6E+02 0.0056 23.6 5.7 18 27-44 195-212 (586)
105 2g0d_A Nisin biosynthesis prot 23.2 49 0.0017 24.0 2.5 23 25-47 229-254 (409)
106 1lf6_A Glucoamylase; (alpha/al 22.9 1E+02 0.0035 24.6 4.4 39 5-49 600-638 (684)
107 1ixs_A Holliday junction DNA h 22.4 63 0.0022 18.2 2.4 25 10-37 19-43 (62)
108 2dbs_A Hypothetical protein TT 22.3 52 0.0018 20.2 2.1 25 23-48 40-64 (90)
109 3s88_J GP2, GP2, envelope glyc 20.6 1.2E+02 0.0043 20.6 3.9 38 4-41 89-127 (167)
110 1z96_A DNA-damage, UBA-domain 20.6 89 0.003 15.2 3.0 8 28-35 32-39 (40)
111 1gai_A Glucoamylase-471; hydro 20.0 1.1E+02 0.0036 23.8 3.9 35 8-46 56-99 (472)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.89 E-value=2.2e-23 Score=170.39 Aligned_cols=83 Identities=31% Similarity=0.679 Sum_probs=77.2
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhh
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKF 81 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~ 81 (87)
.|++++|||||+||+++++. ++++++|+|+||+++|++||+|.++.++|+||+.|||+|++|+++|||+||++|++++
T Consensus 646 ~s~v~~TAwALlALl~ag~~--~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~i~Y~~y~~~fpl~AL~~y~~~~ 723 (732)
T 1w6k_A 646 QSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFSQLY 723 (732)
T ss_dssp SCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEEECCTTHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCCcccccccchhhhcccchhHHHHHHHHHHHHHhc
Confidence 47999999999999999987 4468999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 043877 82 QSPKI 86 (87)
Q Consensus 82 ~~~~~ 86 (87)
+++++
T Consensus 724 ~~~~~ 728 (732)
T 1w6k_A 724 PERAL 728 (732)
T ss_dssp TTSGG
T ss_pred chhhc
Confidence 87643
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.89 E-value=2.6e-23 Score=166.80 Aligned_cols=79 Identities=33% Similarity=0.608 Sum_probs=74.3
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcccccc-ccccccccCCCchhHHhHHHHHHHHHh
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRA-FMGNCMSHYPTYRNIFPTWALAEYRSK 80 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~-f~~~~~i~Y~~Y~~~fPl~ALg~y~~~ 80 (87)
.|++++|+|||+||++++..+ + ++++||++||+++|++||+|+++..+|+ ||+.|||+|++|+++||||||++|+++
T Consensus 550 ~s~v~~Ta~ALlaL~~ag~~~-~-~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl~y~~y~~~f~l~AL~~y~~~ 627 (631)
T 2sqc_A 550 ASTPSQTAWALMALIAGGRAE-S-EAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQA 627 (631)
T ss_dssp SCCHHHHHHHHHHHHHTTCSS-S-HHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEEEETTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCC-h-HHHHHHHHHHHhccCCCCCcCCCCcccccccccceeeccchhhHHHHHHHHHHHHH
Confidence 588999999999999999884 3 5799999999999999999999999999 999999999999999999999999998
Q ss_pred hc
Q 043877 81 FQ 82 (87)
Q Consensus 81 ~~ 82 (87)
+.
T Consensus 628 ~~ 629 (631)
T 2sqc_A 628 IE 629 (631)
T ss_dssp HH
T ss_pred hh
Confidence 74
No 3
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.15 E-value=6.5e-11 Score=87.01 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=50.6
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhhcC
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKFQS 83 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~~ 83 (87)
++++|||||+||+++++. +.+.++|+||+++|++||+|... +..+++|+||++|.++...
T Consensus 236 ~ve~Ta~aLlal~~~~~~----~~~~~~v~wL~~qq~~~Ggw~sT----------------q~T~~aL~AL~~y~~~~~~ 295 (310)
T 2wy7_A 236 NVEATSYALLALLQLKDF----DFVPPVVRWLNEQRYYGGGYGST----------------QATFMVFQALAQYQKDAPD 295 (310)
T ss_dssp HHHHHHHHHHHHHHHTCT----TTHHHHHHHHHHTTCCCCSTTCH----------------HHHHHHHHHHHHHHHHCC-
T ss_pred chHHHHHHHHHHHhcCCh----hhHHHHHHHHHHccCCCCCeecc----------------HHHHHHHHHHHHHHHHcCC
Confidence 789999999999999864 24999999999999999999643 3456799999999987654
No 4
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.99 E-value=7.2e-10 Score=80.00 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=49.0
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHh
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSK 80 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~ 80 (87)
++++|||||+||+++++. +.+.++|+||++.|++||+|... ...++.|.||++|..+
T Consensus 220 ~ve~Ta~aLlal~~~~~~----~~~~~~v~wL~~qq~~~Ggw~sT----------------q~T~~aL~AL~~y~~~ 276 (277)
T 1qqf_A 220 NVEATSYALLALLLLKDF----DSVPPVVRWLNDERYYGGGYGST----------------QATFMVFQALAQYRAD 276 (277)
T ss_dssp HHHHHHHHHHHHHHTTCT----TSHHHHHHHHHHCCCCTTSTTCH----------------HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCh----hhHHHHHHHHHHccCCCCCeecc----------------hHHHHHHHHHHHHHHh
Confidence 788999999999999864 24999999999999999999753 3466899999999765
No 5
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=98.72 E-value=2.7e-08 Score=74.89 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=49.7
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhhc
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKFQ 82 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~ 82 (87)
++++|||||+||++.+.. .+.+.+.|+||++.|+.+|+|... ...+..|.||++|.....
T Consensus 305 ~vE~TAyaLLall~~~~~---~~~~~~iv~WL~~qrn~~Ggw~sT----------------qdTvvAL~AL~~y~~~~~ 364 (367)
T 1hzf_A 305 WIETTAYALLHLLLHEGK---AEMADQASAWLTRQGSFQGGFRST----------------QDTVIALDALSAYWIASH 364 (367)
T ss_dssp HHHHHHHHHHHHHHHTCS---SHHHHHHHHHHHHHTTSTTCSCSH----------------HHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhccCc---hhhhHHHHHHHHhCcCCCCCcccH----------------HHHHHHHHHHHHHHHHcC
Confidence 789999999999987532 246999999999999999999744 346789999999976543
No 6
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=98.53 E-value=1.2e-07 Score=80.80 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=50.7
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhh
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKF 81 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~ 81 (87)
.|++.+|||||+||++++.. +.+.++++||++.|+.+|+|.... ...++|+||++|....
T Consensus 1046 ~s~ve~tA~aLlall~~~~~----~~~~~~v~wL~~q~~~~g~w~sTq----------------~T~~aL~AL~~y~~~~ 1105 (1325)
T 2pn5_A 1046 TNPIETTAYALLSFVMAEKY----TDGIPVMNWLVNQRYVTGSFPSTQ----------------DTFVGLKALTKMAEKI 1105 (1325)
T ss_dssp SSHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHTTCCTTSSCSSHH----------------HHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhhhccc----hhhHHHHHHHHhccCCCCCccchH----------------HHHHHHHHHHHHHHHc
Confidence 46889999999999998743 368999999999999999997443 2459999999998765
Q ss_pred c
Q 043877 82 Q 82 (87)
Q Consensus 82 ~ 82 (87)
.
T Consensus 1106 ~ 1106 (1325)
T 2pn5_A 1106 S 1106 (1325)
T ss_dssp S
T ss_pred C
Confidence 4
No 7
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.42 E-value=2.8e-07 Score=76.42 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=49.8
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhhcC
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKFQS 83 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~~ 83 (87)
++++|||||+||++++..+ .+.++++||++.|+.+|+|... ...++.|+||+.|......
T Consensus 481 ~ve~TayaLlall~~~~~~----~~~~~v~wL~~qq~~~Ggw~ST----------------QdT~~Al~AL~~y~~~~~~ 540 (915)
T 2hr0_B 481 NVEATSYALLALLQLKDFD----FVPPVVRWLNEQRYYGGGYGST----------------QATFMVFQALAQYQKDAPD 540 (915)
T ss_dssp HHHHHHHHHHHHHHTTCTT----THHHHHHHHHTCCCSSSSCCSH----------------HHHHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHHhcCChh----hHHHHHHHHHhcccCCCCccch----------------hhHHHHHHHHHHHHHHcCc
Confidence 6789999999999998642 4899999999999999999743 2266889999999876543
No 8
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=98.39 E-value=1.9e-07 Score=72.91 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=38.4
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcc-cCCCCCC
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQL-GEGDFPQ 47 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~-~dG~W~e 47 (87)
+|++.||+|||+||+.+|..+ ...++|+++||+++|. ++|||.-
T Consensus 246 eSh~~~T~~Al~aL~~lg~~~--~~~~~rl~~wL~~rQ~~~~GGf~g 290 (437)
T 2h6f_B 246 EAHGGYTFCGLAALVILKRER--SLNLKSLLQWVTSRQMRFEGGFQG 290 (437)
T ss_dssp CCCHHHHHHHHHHHHHHTCGG--GSCHHHHHHHHHHTBCTTTCSBBS
T ss_pred CCCccHHHHHHHHHHHcCCCC--cccHHHHHHHHHhcCCCCCCCccC
Confidence 589999999999999999875 2359999999999998 7888853
No 9
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=98.27 E-value=6.1e-07 Score=67.51 Aligned_cols=45 Identities=18% Similarity=0.062 Sum_probs=39.4
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
+|++.+|.||+.+|..++..+ +..++|+++||+++|++||+|...
T Consensus 188 esh~~~T~~al~aL~llg~~~--~~~~~~~~~wL~~~Q~~dGGf~gr 232 (331)
T 3dss_B 188 ESHAGQIYCCTGFLAITSQLH--QVNSDLLGWWLCERQLPSGGLNGR 232 (331)
T ss_dssp CCCHHHHHHHHHHHHHTTCGG--GSCHHHHHHHHHTTBCTTSCBCSS
T ss_pred CCcHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHhCCCCCCcCCC
Confidence 588999999999999999874 235999999999999999999754
No 10
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=98.10 E-value=7.7e-06 Score=65.59 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=48.5
Q ss_pred chHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHH
Q 043877 3 SNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEY 77 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y 77 (87)
+++..||++|++|...+.+. +.+.++||++||++.|++||+|.... | ++ ..|...+-+.||+..
T Consensus 444 ~~vd~Ta~vl~aL~~~g~~~-~~~~i~rai~~L~~~Q~~DGsw~g~w--g-------~~-~~y~Ta~~l~aL~~~ 507 (631)
T 2sqc_A 444 PSEDVTAHVLECFGSFGYDD-AWKVIRRAVEYLKREQKPDGSWFGRW--G-------VN-YLYGTGAVVSALKAV 507 (631)
T ss_dssp CBHHHHHHHHHHHHTTTCCT-TSHHHHHHHHHHHHHCCTTSCCCCSS--B-------SS-HHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHhcCCCCCCCCCC--C-------CC-chHHHHHHHHHHHHh
Confidence 67889999999999998765 33579999999999999999994321 1 11 225566778777654
No 11
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=98.08 E-value=3.3e-06 Score=69.15 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=38.0
Q ss_pred HhhHHHHHHHHHHhCCCCCCc---hHHHHHHHHHHHhcccCCCCCCcc
Q 043877 5 LVQTSWAMMALIHAGQMERGP---TPLHHAAKLLINSQLGEGDFPQQE 49 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~~~---~~i~Rgv~~Ll~~Q~~dG~W~e~~ 49 (87)
.--|++||.||.++|....++ +.++||++||+++|++||+|++..
T Consensus 586 ~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~ 633 (732)
T 1w6k_A 586 TYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDF 633 (732)
T ss_dssp HHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCT
T ss_pred chHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCC
Confidence 346999999999999864332 479999999999999999999864
No 12
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=98.02 E-value=1.5e-06 Score=66.29 Aligned_cols=47 Identities=26% Similarity=0.173 Sum_probs=37.1
Q ss_pred HhhHHHHHHHHHHhCCCCC---CchHHHHHHHHHHHhcccCCCCCCcccc
Q 043877 5 LVQTSWAMMALIHAGQMER---GPTPLHHAAKLLINSQLGEGDFPQQELT 51 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~---~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~ 51 (87)
...|+-+|++|..+..... -.++++||++||+++|.+||||++-.+.
T Consensus 73 nddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd 122 (332)
T 1gxm_A 73 NGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTGALPQFYPL 122 (332)
T ss_dssp GGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTSCCBSEESC
T ss_pred CccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCCCccccCCC
Confidence 4569999999988643221 1468999999999999999999986543
No 13
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=97.88 E-value=7.7e-06 Score=63.87 Aligned_cols=44 Identities=7% Similarity=0.104 Sum_probs=32.6
Q ss_pred hHhhHHHHHHHHHHhCCCCC-CchHHHHHHHHHHHhcccCCCCCC
Q 043877 4 NLVQTSWAMMALIHAGQMER-GPTPLHHAAKLLINSQLGEGDFPQ 47 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~-~~~~i~Rgv~~Ll~~Q~~dG~W~e 47 (87)
+..+|+|+|+.||....+.. ..++|+|||+||.++|++||+|..
T Consensus 291 s~~esa~il~~LM~~~~~~~~~~~aI~~Av~WL~s~Q~~dg~w~~ 335 (408)
T 1r76_A 291 SSTESARILLFLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWVK 335 (408)
T ss_dssp EHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHSCCCC-----
T ss_pred cHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhcCCCceee
Confidence 46899999999999987521 113699999999999999999973
No 14
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=97.85 E-value=1.5e-05 Score=62.12 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcc
Q 043877 6 VQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQE 49 (87)
Q Consensus 6 ~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~ 49 (87)
+.+||++++|+ +..+ ++.++|+++||++.|+.||||++..
T Consensus 204 ty~A~~~L~ll--g~~~--~~~v~k~~~~L~s~Q~~DGGwg~~p 243 (437)
T 2h6f_B 204 AYCAASVASLT--NIIT--PDLFEGTAEWIARCQNWEGGIGGVP 243 (437)
T ss_dssp HHHHHHHHHHT--TCCC--TTTTTTHHHHHHHHBCTTSSBCSST
T ss_pred HHHHHHHHHHh--CCCC--hHHHHHHHHHHHHccCCCCCcCCCC
Confidence 45555555544 5543 2469999999999999999999763
No 15
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=97.85 E-value=8.9e-06 Score=70.72 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=50.8
Q ss_pred chHhhHHHHHHHHHHhCCCC--CCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHh
Q 043877 3 SNLVQTSWAMMALIHAGQME--RGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSK 80 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~--~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~ 80 (87)
..++.||||||||+..+... .|-+.+.+.++||.+.|+.+|+|.... ..++.|.||++|..+
T Consensus 1181 ~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~~Ggf~STQ----------------dTv~aL~ALa~Y~~~ 1244 (1451)
T 4acq_A 1181 AEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNAQGGFSSTQ----------------DTVVALHALSKYGAA 1244 (1451)
T ss_dssp GGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCTTSCCSSHH----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHcCCCCCCcccHH----------------HHHHHHHHHHHHHHh
Confidence 35789999999999987421 122358899999999999999996432 367899999999887
Q ss_pred hcC
Q 043877 81 FQS 83 (87)
Q Consensus 81 ~~~ 83 (87)
...
T Consensus 1245 ~~~ 1247 (1451)
T 4acq_A 1245 TFT 1247 (1451)
T ss_dssp HCC
T ss_pred cCC
Confidence 543
No 16
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=97.84 E-value=1.2e-05 Score=62.84 Aligned_cols=46 Identities=20% Similarity=0.105 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHhCCC----C--CCchHHHHHHHHHHHhcccCCCCCCcccc
Q 043877 6 VQTSWAMMALIHAGQM----E--RGPTPLHHAAKLLINSQLGEGDFPQQELT 51 (87)
Q Consensus 6 ~qTaWAL~aLlaag~~----~--~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~ 51 (87)
..|+-+|++|..+... + .-.++++||++||+++|.+||||++-.+.
T Consensus 149 ddTa~vl~aL~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpd 200 (408)
T 1r76_A 149 DATVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPL 200 (408)
T ss_dssp GTTHHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSC
T ss_pred chHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCcc
Confidence 5699999999886432 2 11468999999999999999999886644
No 17
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=97.83 E-value=1.3e-05 Score=60.25 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=39.0
Q ss_pred CchHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcc
Q 043877 2 RSNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQE 49 (87)
Q Consensus 2 ~st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~ 49 (87)
++++-.|.||+.+|...+..+ +..++|+++||++.|++||+|++..
T Consensus 140 e~d~~~ty~Al~~L~llg~~~--~~~~~k~v~~L~s~Q~~dGGfg~~p 185 (331)
T 3dss_B 140 EIDTRFSFCAVATLALLGKLD--AINVEKAIEFVLSCMNFDGGFGCRP 185 (331)
T ss_dssp CBCHHHHHHHHHHHHHHTCGG--GSCHHHHHHHHHTTBCTTSCBCSST
T ss_pred CCchHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhCcCCCCcCCCC
Confidence 356778999999999999864 3469999999999999999998763
No 18
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=97.76 E-value=1.8e-05 Score=60.77 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=34.5
Q ss_pred CCchHhhHHHHHHHHHHhCCCCCC-c-hHHHHHHHHHHHhcccCCCCC
Q 043877 1 NRSNLVQTSWAMMALIHAGQMERG-P-TPLHHAAKLLINSQLGEGDFP 46 (87)
Q Consensus 1 ~~st~~qTaWAL~aLlaag~~~~~-~-~~i~Rgv~~Ll~~Q~~dG~W~ 46 (87)
++||+.||.||+.+|...+..+.+ | ..++|+++||+++| +||+.
T Consensus 216 ~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~ 261 (377)
T 1n4q_B 216 LESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYH 261 (377)
T ss_dssp SCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBC
T ss_pred CCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcC
Confidence 368999999999999888876421 1 16999999999999 66563
No 19
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=97.60 E-value=5.3e-05 Score=56.87 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=35.5
Q ss_pred HhhHHHHHHHHHHhCCCC-CCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 5 LVQTSWAMMALIHAGQME-RGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~-~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
.-=||+++.+|..++... .+...|+||++||+++|++||+|.+.
T Consensus 120 ~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~ 164 (367)
T 1hzf_A 120 TWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDP 164 (367)
T ss_dssp HHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCS
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccc
Confidence 344999999999887321 13458999999999999999999875
No 20
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=97.49 E-value=0.00019 Score=51.38 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=37.5
Q ss_pred chHhhHHHHHHHHHHhCCC-CCCchHHHHHHHHHHH-hcccCCCCCCcc
Q 043877 3 SNLVQTSWAMMALIHAGQM-ERGPTPLHHAAKLLIN-SQLGEGDFPQQE 49 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~-~~~~~~i~Rgv~~Ll~-~Q~~dG~W~e~~ 49 (87)
+++-=||+++.+|..++.- ..+++.|+||++||++ +|++||+|.+..
T Consensus 65 ~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~ 113 (277)
T 1qqf_A 65 PSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDG 113 (277)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSS
T ss_pred ccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCc
Confidence 4555699999999988742 2244689999999995 999999998654
No 21
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=97.39 E-value=0.00023 Score=54.50 Aligned_cols=45 Identities=20% Similarity=0.111 Sum_probs=37.9
Q ss_pred chHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 3 SNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
+++..|..||.+|...+...... ..+|+++||.+.|++||+|...
T Consensus 120 ~~v~~T~~Al~~L~~lg~~~~~i-d~~~~~~fL~~~Q~~DGSf~g~ 164 (377)
T 1n4q_B 120 GHIAMTYTGLSCLIILGDDLSRV-DKEACLAGLRALQLEDGSFCAV 164 (377)
T ss_dssp CCHHHHHHHHHHHHHTTCCSTTS-CHHHHHHHHHHHBCTTSCBCSS
T ss_pred CCHHHHHHHHHHHHHhCcccchh-hHHHHHHHHHHhcCCCCCeeec
Confidence 78999999999999988644334 3789999999999999999754
No 22
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=97.36 E-value=0.00033 Score=51.07 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=37.4
Q ss_pred chHhhHHHHHHHHHHhCCC-CCCchHHHHHHHHHHH-hcccCCCCCCcc
Q 043877 3 SNLVQTSWAMMALIHAGQM-ERGPTPLHHAAKLLIN-SQLGEGDFPQQE 49 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~-~~~~~~i~Rgv~~Ll~-~Q~~dG~W~e~~ 49 (87)
+++-=||+++.+|..+..- ..+++.|+||++||++ .|++||+|.+..
T Consensus 81 ~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~ 129 (310)
T 2wy7_A 81 PSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDA 129 (310)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSS
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCC
Confidence 4555699999999988742 2244689999999995 999999998653
No 23
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=97.32 E-value=0.00074 Score=54.67 Aligned_cols=59 Identities=19% Similarity=0.207 Sum_probs=46.9
Q ss_pred HhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhhc
Q 043877 5 LVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKFQ 82 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~ 82 (87)
+.-||+||++++..... .+.+.+-++||++.|+.+|+|.- ....++.|.||++|.....
T Consensus 583 VEttayaLla~l~~~~~---~~~a~~iv~WL~~Qr~~~Ggf~S----------------TQdTv~AL~ALa~y~~~~~ 641 (767)
T 4fxk_B 583 IETTAYALLHLLLHEGK---AEMADQASAWLTRQGSFQGGFRS----------------TQDTVIALDALSAYWIASH 641 (767)
T ss_dssp HHHHHHHHHHHHHHTSS---CHHHHHHHHHHHHTCCTTSSCSS----------------HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHhhcCCCCCcC----------------HHHHHHHHHHHHHHHHhcc
Confidence 56789999999987542 24588999999999999999963 2347899999999976543
No 24
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.16 E-value=0.0012 Score=57.79 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=47.9
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhhcC
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKFQS 83 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~~ 83 (87)
.+..||+||+||+..+. .+.+.+-++||++.|+.+|+|.-. ...++.|.||++|......
T Consensus 1247 ~ve~tayaLlall~~~~----~~~~~~iv~wL~~qr~~~Gg~~ST----------------QdT~~Al~AL~~y~~~~~~ 1306 (1676)
T 3cu7_A 1247 MVETTAYALLTSLNLKD----INYVNPVIKWLSEEQRYGGGFYST----------------QDTINAIEGLTEYSLLVKQ 1306 (1676)
T ss_dssp HHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHSCSSSCCSTT----------------TTHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHhcCC----hhHHHHHHHHHHhccCCCCCcccc----------------HHHHHHHHHHHHHHHHcCC
Confidence 46789999999999763 235888999999999898999632 3467999999999776543
No 25
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=96.93 E-value=0.0012 Score=57.65 Aligned_cols=73 Identities=16% Similarity=0.071 Sum_probs=47.2
Q ss_pred chHhhHHHHHHHHHHhCCC-CCCchHHHHHHHHHHHhcccCCCCCCccccccccccc--cccCCCchhHHhHHHHHHH
Q 043877 3 SNLVQTSWAMMALIHAGQM-ERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNC--MSHYPTYRNIFPTWALAEY 77 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~-~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~--~i~Y~~Y~~~fPl~ALg~y 77 (87)
+..-=||+++..|..+... ..++..+.||++||+++|++||+|.+.... |++.. -..-..|-..|-|.||.+.
T Consensus 1014 ~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~--~~~~m~gg~~~~~~lTAyvl~aL~~~ 1089 (1451)
T 4acq_A 1014 GNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSL--LNNAIKGGVEDEVTLSAYITIALLEI 1089 (1451)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCC--SCGGGCCSCSCHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcc--cchhhcCCCCCCccchHHHHHHHHHc
Confidence 4455699999999988632 124468999999999999999999864321 21110 0011223455777777653
No 26
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=96.86 E-value=0.0015 Score=57.25 Aligned_cols=59 Identities=20% Similarity=0.301 Sum_probs=47.1
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhhc
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKFQ 82 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~ 82 (87)
.+..||+||++|+..+..+ .+.+-++||++.|+.+|+|.-. ...++.|.||+.|.....
T Consensus 1228 ~vE~tayaLlall~~~~~~----~~~~iv~wL~~qr~~~gg~~ST----------------qdT~~Al~AL~~y~~~~~ 1286 (1661)
T 2b39_A 1228 NVEATSYALLALLARKDYD----TTPPVVRWLNEQRYYGGGYGST----------------QATFMVFQALAQYQKDVP 1286 (1661)
T ss_dssp HHHHHHHHHHHHHHHTCTT----TSHHHHHHHHHCCTBTTBBCSH----------------HHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHhcCChh----hHHHHHHHHHhcccCCCCcccc----------------hHHHHHHHHHHHHHHHcC
Confidence 4568999999999988642 2677899999999998999632 335799999999986653
No 27
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=96.64 E-value=0.0012 Score=52.97 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=34.4
Q ss_pred HhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCC
Q 043877 5 LVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQ 47 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e 47 (87)
+--|-.|+.+|-..+.. +++.++|+++||++.|+.||||++
T Consensus 196 ir~TY~Al~~L~lLg~~--~~~~v~kav~fI~scQn~DGGfGe 236 (520)
T 3q7a_B 196 VRGTYCLLVVATLLDII--TPELLHNVDKFVSACQTYEGGFAC 236 (520)
T ss_dssp HHHHHHHHHHHHHHTCC--CHHHHTTHHHHHHTTBCTTSSBCS
T ss_pred HHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccC
Confidence 44577888888888874 445799999999999999999998
No 28
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=96.53 E-value=0.0013 Score=51.33 Aligned_cols=51 Identities=18% Similarity=0.077 Sum_probs=38.5
Q ss_pred chHhhHHHHHHHHHHhCCCCC---CchHHHHHH----HHHHHhcccCCCCCCcccccc
Q 043877 3 SNLVQTSWAMMALIHAGQMER---GPTPLHHAA----KLLINSQLGEGDFPQQELTRA 53 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~~---~~~~i~Rgv----~~Ll~~Q~~dG~W~e~~~~G~ 53 (87)
..|.-||+|+|||..++.... +.+.|.|++ ++|++.|++||.|+..+.+|-
T Consensus 176 ~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FGN~~ST~l 233 (414)
T 2bb6_A 176 VSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKILKAQTPEGYFGNVYSTPL 233 (414)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTBCTTSCBSSTTTHHH
T ss_pred ccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHH
Confidence 358899999999999876421 234699999 777788999999986555543
No 29
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=96.13 E-value=0.00093 Score=59.08 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=0.0
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhhc
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKFQ 82 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~ 82 (87)
+++-||+|||||+..++.+ ...+.|+||.+.|+..|||.-. -..+..|.||++|..+..
T Consensus 1210 ~VE~TaYaLLa~l~~~~~~----~a~~iv~WL~~qr~~~Ggf~ST----------------QdTvvaLqALa~Y~~~~~ 1268 (1642)
T 3prx_B 1210 NIEGTSYALLALLKMKKFD----QTGPIVRWLTDQNFYGETYGQT----------------QATVMAFQALAEYEIQMP 1268 (1642)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccCchh----hHHHHHHHHHHhccCCCcccCc----------------HHHHHHHHHHHHHHHhcC
Confidence 6789999999999987542 3677999999999999999532 225678999999977643
No 30
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.12 E-value=0.0024 Score=53.27 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=29.6
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcc
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQE 49 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~ 49 (87)
.+=.||| .|++-.-.....| .....++||++.|++||+|+...
T Consensus 82 S~YDTAW--VAmvp~~~~~~~p-~Fp~~~~wil~nQ~~DGsWg~~~ 124 (817)
T 3sdr_A 82 SAYDTAW--VARVPAIDGSARP-QFPQTVDWILKNQLKDGSWGIQS 124 (817)
T ss_dssp CHHHHHH--HHTCBCTTSCSSB-SSHHHHHHHHHCCCTTSCCSCTT
T ss_pred CHHHhhH--HheeecCCCCCCC-CchHHHHHHHHccCCCCCCCCCC
Confidence 3458999 4555332211134 36779999999999999998653
No 31
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=96.06 E-value=0.0023 Score=53.22 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=29.3
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcc
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQE 49 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~ 49 (87)
.+=.|||+ |++-.-.....| .....++||++.|++||+|+...
T Consensus 55 S~YDTAWV--amvp~~~~~~~p-~Fp~~~~wil~nQ~~DGsWg~~~ 97 (785)
T 3s9v_A 55 SAYDTAWV--ARIPAVDGSDNP-HFPETVEWILQNQLKDGSWGEGF 97 (785)
T ss_dssp CHHHHHHH--TTSBCTTSCSSB-SSHHHHHHHHHCCCTTSCCSCSS
T ss_pred cHHHhhHH--hccccCCCCCCC-CchHHHHHHHHccCCCCCCCCCC
Confidence 34589994 444322211134 36779999999999999999653
No 32
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=95.92 E-value=0.0088 Score=49.64 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=36.1
Q ss_pred chHhhHHHHHHHHHHhCCC-CCCchHHHHHHHHHHH-hcccCCCCCCc
Q 043877 3 SNLVQTSWAMMALIHAGQM-ERGPTPLHHAAKLLIN-SQLGEGDFPQQ 48 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~-~~~~~~i~Rgv~~Ll~-~Q~~dG~W~e~ 48 (87)
+.+-=||+++..|..+... ..++..++||++||++ +|++||+|.+.
T Consensus 326 ~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~ 373 (915)
T 2hr0_B 326 PSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQED 373 (915)
T ss_dssp BCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCC
T ss_pred CcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccC
Confidence 3445699999999988632 1244689999999995 99999999764
No 33
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=95.65 E-value=0.0031 Score=52.32 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=28.9
Q ss_pred hHhhHHHHHHHHHHhC--CCCCCchHHHHHHHHHHHhcccCCCCCCcc
Q 043877 4 NLVQTSWAMMALIHAG--QMERGPTPLHHAAKLLINSQLGEGDFPQQE 49 (87)
Q Consensus 4 t~~qTaWAL~aLlaag--~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~ 49 (87)
.+=.||| .|++-.- .....| .....++||++.|++||+|+...
T Consensus 32 S~YDTAW--Vamvp~~~~~~~~~p-~Fp~~~~wil~nQ~~DGsWg~~~ 76 (764)
T 3p5p_A 32 SAYDTAW--VARLATISSDGSEKP-RFPQALNWVFNNQLQDGSWGIES 76 (764)
T ss_dssp CHHHHHH--HHHCEEECTTSCEEE-SCHHHHHHHHHCCCTTSCCSCTT
T ss_pred cHHHHHH--HHhCccccCCCCCCC-CChHHHHHHHHccCCCCCCCCCC
Confidence 3458999 4555332 111123 36669999999999999998653
No 34
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=95.51 E-value=0.0054 Score=50.75 Aligned_cols=40 Identities=33% Similarity=0.607 Sum_probs=28.4
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
.+=.|||+ |++-.- + ..| .....++||++.|++||+|+..
T Consensus 33 S~YDTAWV--Amvp~~-~-~~p-~Fp~~~~wil~nQ~~DGsWG~~ 72 (727)
T 3pya_A 33 SAYDTAWV--ALIDAG-D-KTP-AFPSAVKWIAENQLSDGSWGDA 72 (727)
T ss_dssp CHHHHHHH--HTCBCS-S-SSB-SCHHHHHHHHHTCCTTSCCSCS
T ss_pred cHHHhHHH--hhccCC-C-CCC-CCHHHHHHHHhcCCCCCCCCCC
Confidence 44589994 555432 2 133 2566999999999999999864
No 35
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=95.29 E-value=0.027 Score=48.13 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=36.3
Q ss_pred chHhhHHHHHHHHHHhCCCC--CCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 3 SNLVQTSWAMMALIHAGQME--RGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~--~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
++.-=||+++.+|..+..-. .+++.++||++||.+.|++||+|.+.
T Consensus 899 ~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~ 946 (1325)
T 2pn5_A 899 GSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKA 946 (1325)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCC
T ss_pred CCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCcccc
Confidence 45556999999999874321 24467999999999999999999764
No 36
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=95.27 E-value=0.011 Score=46.12 Aligned_cols=43 Identities=21% Similarity=0.148 Sum_probs=34.9
Q ss_pred hHhhHHHHHHHHHHhCCCCCC-chHHHHHHHHHHHhcccCCCCCC
Q 043877 4 NLVQTSWAMMALIHAGQMERG-PTPLHHAAKLLINSQLGEGDFPQ 47 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~-~~~i~Rgv~~Ll~~Q~~dG~W~e 47 (87)
.+-.|++|+.||++++.+... +....+++++|++ |.+||+|..
T Consensus 227 N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~n 270 (414)
T 2bb6_A 227 NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQN 270 (414)
T ss_dssp STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCCS
T ss_pred chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCCC
Confidence 456799999999999886421 1258889999999 999999973
No 37
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=95.14 E-value=0.0069 Score=46.14 Aligned_cols=30 Identities=10% Similarity=0.172 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHhcccCC----CCCCcccccccc
Q 043877 26 TPLHHAAKLLINSQLGEG----DFPQQELTRAFM 55 (87)
Q Consensus 26 ~~i~Rgv~~Ll~~Q~~dG----~W~e~~~~G~f~ 55 (87)
.+++|||+||++.|.+|| .|+.++..|++.
T Consensus 169 ~av~Rgid~Llk~Qe~dggw~g~Wg~qydygT~~ 202 (332)
T 1gxm_A 169 TAVTKGTDYILKAQWKQNGVLTVWCAQHGALDYQ 202 (332)
T ss_dssp HHHHHHHHHHHHHSCEETTEECCCCSEECTTTCC
T ss_pred HHHHHHHHHHHHhhCccCCCcCeecccccccccc
Confidence 489999999999999987 678888888753
No 38
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=94.58 E-value=0.048 Score=44.05 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=36.9
Q ss_pred hHhhHHHHHHHHHHhCCCC-CCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 4 NLVQTSWAMMALIHAGQME-RGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~-~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
..==||+++..|..+..-. -|+..+.++++||+++|.+||.|.+.
T Consensus 396 s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~ 441 (767)
T 4fxk_B 396 STWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDP 441 (767)
T ss_dssp CHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCS
T ss_pred CchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhc
Confidence 3456999999999986532 25678999999999999999999765
No 39
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=94.56 E-value=0.067 Score=42.84 Aligned_cols=67 Identities=13% Similarity=0.049 Sum_probs=44.9
Q ss_pred chHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHH
Q 043877 3 SNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEY 77 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y 77 (87)
|.+.-.=|+|-||--.|..- +++..++.|+||++.|++||||.-...+|..+ |.-..++.|.+|..+
T Consensus 87 sr~wl~Yw~l~aL~LLg~~l-d~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~-------hla~TysAV~aL~il 153 (520)
T 3q7a_B 87 SRPWLVFWTVHSLDLLGVAL-DQGTKDRVVSTLLHFLSPKGGFGGGPANSQIP-------HLLPTYASVCSLAIA 153 (520)
T ss_dssp GHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHTTBCTTSSBCSSCTTTSCC-------CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC-------cHHHHHHHHHHHHHh
Confidence 34455668999999888654 45678999999999999999886543222211 222344566666655
No 40
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=94.17 E-value=0.011 Score=45.94 Aligned_cols=49 Identities=14% Similarity=-0.016 Sum_probs=36.9
Q ss_pred hHhhHHHHHHHHHHhCC---CCC---C----chHHHHHHHHHHHhcccCCCCCCccccc
Q 043877 4 NLVQTSWAMMALIHAGQ---MER---G----PTPLHHAAKLLINSQLGEGDFPQQELTR 52 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~---~~~---~----~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G 52 (87)
.|.-||.|+|||.-++. ... + ..+|++.+++|++.|++||.|+..+.+|
T Consensus 151 sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fGn~yST~ 209 (399)
T 2pmv_A 151 NVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIGDIYSTG 209 (399)
T ss_dssp CHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBSSHHHHH
T ss_pred cchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCcccccccHH
Confidence 46789999999998876 221 1 2367888888888899999998665555
No 41
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=93.14 E-value=0.11 Score=45.67 Aligned_cols=46 Identities=20% Similarity=0.237 Sum_probs=36.1
Q ss_pred chHhhHHHHHHHHHHhCCC-CCCchHHHHHHHHHHH-hcccCCCCCCc
Q 043877 3 SNLVQTSWAMMALIHAGQM-ERGPTPLHHAAKLLIN-SQLGEGDFPQQ 48 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~-~~~~~~i~Rgv~~Ll~-~Q~~dG~W~e~ 48 (87)
+..-=||+++..|..|... .-++..+.+|++||++ .|++||.|.+.
T Consensus 1073 ~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1120 (1661)
T 2b39_A 1073 PSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQED 1120 (1661)
T ss_dssp CCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCC
T ss_pred CchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccc
Confidence 3445699999999988642 2245679999999995 99999999764
No 42
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=93.11 E-value=0.017 Score=51.27 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCC-C-CCchHHHHHHHHHHH-hcccCCCCCCccccccccccc--cc---cCCCchhHHhHHHHHHHH
Q 043877 7 QTSWAMMALIHAGQM-E-RGPTPLHHAAKLLIN-SQLGEGDFPQQELTRAFMGNC--MS---HYPTYRNIFPTWALAEYR 78 (87)
Q Consensus 7 qTaWAL~aLlaag~~-~-~~~~~i~Rgv~~Ll~-~Q~~dG~W~e~~~~G~f~~~~--~i---~Y~~Y~~~fPl~ALg~y~ 78 (87)
=||+++..|..|..- . -|+..|.++++||++ +|++||.|.|.... |++.. -+ .-+..-..|-+.||.+..
T Consensus 1061 LTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v--~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~ 1138 (1642)
T 3prx_B 1061 LTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPV--LSGTMQGGIQGAEEEVYLTAFILVALLESK 1138 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccc--cchhccCCccCCCCcccchHHHHHHHHhcc
Confidence 489999999987642 1 244579999999998 89999999876532 22211 00 112333457777777654
No 43
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=92.84 E-value=0.11 Score=40.33 Aligned_cols=43 Identities=19% Similarity=0.362 Sum_probs=35.2
Q ss_pred chHhhHHHHHHHHHHhCCCCCCch-HHHHHHHHHHHhcccCCCCCC
Q 043877 3 SNLVQTSWAMMALIHAGQMERGPT-PLHHAAKLLINSQLGEGDFPQ 47 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~~~~~-~i~Rgv~~Ll~~Q~~dG~W~e 47 (87)
+..-.|+-||.||++++..+.. + ...++++||++ |.+||+|..
T Consensus 203 Gn~yST~LA~QAL~~~~~~~~~-~W~c~~al~~l~~-q~~~G~F~n 246 (399)
T 2pmv_A 203 GDIYSTGLAMQALSVTPEPSKK-EWNCKKTTDMILN-EIKQGKFHN 246 (399)
T ss_dssp SSHHHHHHHHHHHHHCSSCCSS-CCCHHHHHHHHHH-HHTTTTTCS
T ss_pred cccccHHHHHHHHHhcCCCccc-cccHHHHHHHHHH-HhhCCCcCC
Confidence 3567899999999999874322 3 48899999999 999999974
No 44
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=92.56 E-value=0.11 Score=45.66 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=36.1
Q ss_pred chHhhHHHHHHHHHHhCCC-CCCchHHHHHHHHHHH-hcccCCCCCCc
Q 043877 3 SNLVQTSWAMMALIHAGQM-ERGPTPLHHAAKLLIN-SQLGEGDFPQQ 48 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~-~~~~~~i~Rgv~~Ll~-~Q~~dG~W~e~ 48 (87)
+..-=||+++..|..|... .-++..+.+|++||.+ +|++||.|.+.
T Consensus 1074 ~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1121 (1676)
T 3cu7_A 1074 ASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKEN 1121 (1676)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCC
T ss_pred CcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCC
Confidence 3445699999999987532 2245679999999999 99999999764
No 45
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=91.75 E-value=0.34 Score=41.26 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc-ccCCCCCCcc-cccc-ccccccccCCCchhHHhHHHHHHHH
Q 043877 7 QTSWAMMALIHAGQMERGPTPLHHAAKLLINSQ-LGEGDFPQQE-LTRA-FMGNCMSHYPTYRNIFPTWALAEYR 78 (87)
Q Consensus 7 qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q-~~dG~W~e~~-~~G~-f~~~~~i~Y~~Y~~~fPl~ALg~y~ 78 (87)
.+++.++||+.+|.+ +..++.++||.+.| +++|.|.+.+ +.|. +-+ -++. -..-.+|+++.+|.
T Consensus 333 Daa~t~~all~~G~~----e~A~~~l~~L~~~Q~~~~G~~~~~y~i~G~~~w~--~~Q~--D~~g~~l~~~~~~~ 399 (1020)
T 1ulv_A 333 DMYQSVTALLAAGDE----EAAARGVEWLFTYQQQPDGHFPQTSRVDGTIGQN--GIQL--DETAFPILLANQIG 399 (1020)
T ss_dssp HHHHHHHHHHHHTCH----HHHHHHHHHHHHHTCCTTSCCCSCBCTTSCBCCC--CCBT--HHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCH----HHHHHHHHHHHHHhcCCCCCeeeEEecCCCcCCC--CccC--ccchHHHHHHHHHH
Confidence 467788888888864 45899999999999 8999998765 3343 211 1122 22346777777763
No 46
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.43 E-value=0.72 Score=27.48 Aligned_cols=27 Identities=30% Similarity=0.154 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHhcccCC
Q 043877 11 AMMALIHAGQMERGPTPLHHAAKLLINSQLGEG 43 (87)
Q Consensus 11 AL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG 43 (87)
.+.||.+.+- | |+|||.||++.+..+|
T Consensus 37 n~~AL~at~G---n---ve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 37 NLQALIATDG---D---TNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHTTS---C---HHHHHHHHHHCCSSSC
T ss_pred HHHHHHHcCC---C---HHHHHHHHHhCCCccC
Confidence 3667777652 2 8999999999887665
No 47
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=85.14 E-value=1.4 Score=25.47 Aligned_cols=30 Identities=23% Similarity=0.260 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccC
Q 043877 8 TSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGE 42 (87)
Q Consensus 8 TaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~d 42 (87)
...|..||.+.+.. + +++|+.||++++.+.
T Consensus 23 ~~~a~~AL~~t~~~--n---ve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 23 RGRAEKALALTGNQ--G---IEAAMDWLMEHEDDP 52 (64)
T ss_dssp HHHHHHHHHHHTSC--C---HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhcCC--C---HHHHHHHHHhCCCCc
Confidence 35688899988643 2 889999999987543
No 48
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=84.83 E-value=1.5 Score=26.01 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHhcccC
Q 043877 11 AMMALIHAGQMERGPTPLHHAAKLLINSQLGE 42 (87)
Q Consensus 11 AL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~d 42 (87)
|..||-+-+. .|+|+++||-++..+.
T Consensus 36 A~kALKat~~------NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 36 VLRAMKKKGE------NIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHCS------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHcCC------CHHHHHHHHHhCCCCC
Confidence 5566666542 2999999999987664
No 49
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=84.63 E-value=0.81 Score=36.86 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 8 TSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 8 TaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
.+..++||+..|.+ +..++.+.||.+.|.+||.|.+.
T Consensus 345 ~~~~~~al~~~G~~----~~a~~~l~~l~~~q~~~G~~~~~ 381 (684)
T 1lf6_A 345 LYHVANAFIAAGDV----DSANRSLDYLAKVVKDNGMIPQN 381 (684)
T ss_dssp HHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHHSSCCSC
T ss_pred HHHHHHHHHHcCCH----HHHHHHHHHHHhhcCCCCCcccc
Confidence 46677788888854 45899999999999999998764
No 50
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=84.03 E-value=1.3 Score=25.72 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=20.2
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhccc
Q 043877 9 SWAMMALIHAGQMERGPTPLHHAAKLLINSQLG 41 (87)
Q Consensus 9 aWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~ 41 (87)
.-|..||.+.+-. .+++|+.||++++.+
T Consensus 34 ~~a~~AL~~t~~~-----nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 34 ARAQKALASTGGR-----SVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHHHTTTS-----CHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHcCCC-----CHHHHHHHHHhCCCC
Confidence 3466777776532 288999999998754
No 51
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=83.55 E-value=1.5 Score=25.50 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhccc
Q 043877 9 SWAMMALIHAGQMERGPTPLHHAAKLLINSQLG 41 (87)
Q Consensus 9 aWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~ 41 (87)
.-|..||.+.+.. .+++|+.||++++.+
T Consensus 24 ~~a~~AL~~t~n~-----~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 24 HTALKALAATGRK-----TAEEALAWLHDHCND 51 (64)
T ss_dssp HHHHHHHHHHTSC-----CHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhCCC-----CHHHHHHHHHhCCCC
Confidence 4577888887753 288999999998854
No 52
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=81.82 E-value=2 Score=26.21 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhccc
Q 043877 9 SWAMMALIHAGQMERGPTPLHHAAKLLINSQLG 41 (87)
Q Consensus 9 aWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~ 41 (87)
.-|..||.+.+.. .+++|+.||++++.+
T Consensus 44 ~~a~~AL~~t~n~-----n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 44 LHCQKAAINTSNA-----GVEEAMNWLLSHMDD 71 (84)
T ss_dssp HHHHHHHHHTTTC-----CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC-----CHHHHHHHHHhCCCc
Confidence 3466777777643 188999999998754
No 53
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.14 E-value=2.5 Score=25.12 Aligned_cols=30 Identities=10% Similarity=0.007 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCC
Q 043877 9 SWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEG 43 (87)
Q Consensus 9 aWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG 43 (87)
.-|..||.+.+.. -+++|+.||++++.+..
T Consensus 24 ~~a~~AL~~t~n~-----~ve~A~ewL~~~~~d~d 53 (74)
T 2dag_A 24 DACRKAVYYTGNS-----GAEAAMNWVMSHMDDPD 53 (74)
T ss_dssp HHHHHHHHHHTSC-----CHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHhCCC-----CHHHHHHHHHhCCCCcc
Confidence 3466777777642 18899999999886543
No 54
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=78.96 E-value=2 Score=32.73 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=40.8
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHH
Q 043877 10 WAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEY 77 (87)
Q Consensus 10 WAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y 77 (87)
.|+.+|++.... |.+-.+.+++-|.+.|..|+..+ +-|.|-..---+-++|.|+.||.|...|
T Consensus 286 yAiaal~~~~~~--D~~la~~~~~rm~~fq~~d~~s~---yyGG~~~~~~~~~~sfdNL~~LlA~~~~ 348 (350)
T 3ren_A 286 YSNVALIANYIG--DKELFNKAIDKLKYYQIKNKDSV---LYGGFGDEKTNSVYSFDNLNALLAFQKY 348 (350)
T ss_dssp HHHHHHHHHHHT--CHHHHHHHHHHHHHHSCCCTTST---TTTSCSBTTTTBCBHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHhcccCCCCcc---cCCcccccCCCceeeeccHHHHHHHHhh
Confidence 455555554433 44568889999999999997442 2333222111234789999999998765
No 55
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=78.79 E-value=2.8 Score=24.20 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHhcccCC
Q 043877 11 AMMALIHAGQMERGPTPLHHAAKLLINSQLGEG 43 (87)
Q Consensus 11 AL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG 43 (87)
|..||.+.+. + +++|+.||++++.+..
T Consensus 26 a~~AL~~~~~---n---ve~A~e~L~~~~~~~~ 52 (63)
T 1wji_A 26 SRQALMDNGN---N---LEAALNVLLTSNKQKP 52 (63)
T ss_dssp HHHHHHHTTS---C---HHHHHHHHHHHSSCCC
T ss_pred HHHHHHHhCC---C---HHHHHHHHHHCCCCcc
Confidence 5667777542 1 8899999999886654
No 56
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=78.01 E-value=1.9 Score=32.38 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhC----CCCCCc------hHHHHHHHHHHHhcccCCCCCC
Q 043877 8 TSWAMMALIHAG----QMERGP------TPLHHAAKLLINSQLGEGDFPQ 47 (87)
Q Consensus 8 TaWAL~aLlaag----~~~~~~------~~i~Rgv~~Ll~~Q~~dG~W~e 47 (87)
-||+++||...- -|..++ +.+++-++.|++.|.+||-|.+
T Consensus 235 ~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~a~~~~~~q~~~G~W~~ 284 (382)
T 3pmm_A 235 NSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQIAALAECQDDSGLWHT 284 (382)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHHHHHHHHHCCTTSCEES
T ss_pred ccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHHHHHcCCCCCChhh
Confidence 489999998653 233232 2477889999999999999975
No 57
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=77.69 E-value=2.8 Score=32.76 Aligned_cols=71 Identities=8% Similarity=0.151 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCCCC----chHHHHHHHH---HHHhcccCCCCCC----------cccccc-ccccc-cccCCCchhH
Q 043877 8 TSWAMMALIHAGQMERG----PTPLHHAAKL---LINSQLGEGDFPQ----------QELTRA-FMGNC-MSHYPTYRNI 68 (87)
Q Consensus 8 TaWAL~aLlaag~~~~~----~~~i~Rgv~~---Ll~~Q~~dG~W~e----------~~~~G~-f~~~~-~i~Y~~Y~~~ 68 (87)
.|..+.||+..|..... .+.+++=+.| |....+++|.|.+ -.+.|. |.... -+..+.|.
T Consensus 71 aa~t~~aL~~~g~~~~~~~~l~~~a~~y~~~~~~lq~~~~~~G~~~~~~~~glgep~y~vdG~~~~~~w~~~Q~D~~g-- 148 (492)
T 2fba_A 71 SAITFLTVLSELEDNNFNTTLAKAVEYYINTSYNLQRTSNPSGSFDDENHKGLGEPKFNTDGSAYTGAWGRPQNDGPA-- 148 (492)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTSCBTTBCTTSGGGGGGGCCEECTTSCBCCSCCSCCBTTHHH--
T ss_pred HHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHhcccCCCCCcCcccccccCceeeccCCCcCCcccCCccccchh--
Confidence 45556666666542111 2346777776 4444578899985 234454 44332 25555544
Q ss_pred HhHHHHHHHHHh
Q 043877 69 FPTWALAEYRSK 80 (87)
Q Consensus 69 fPl~ALg~y~~~ 80 (87)
.+++||-+|.+.
T Consensus 149 ~~~~al~~~~~~ 160 (492)
T 2fba_A 149 LRAYAISRYLND 160 (492)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 778888777544
No 58
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=76.83 E-value=4.5 Score=30.98 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=34.4
Q ss_pred chHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcc---c-CCCCCCc
Q 043877 3 SNLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQL---G-EGDFPQQ 48 (87)
Q Consensus 3 st~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~---~-dG~W~e~ 48 (87)
+++..|=.||..|+..+...-+.-..++=++||.+.|+ + ||++...
T Consensus 92 ~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~ 141 (390)
T 3dra_B 92 PNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPT 141 (390)
T ss_dssp CBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSE
T ss_pred ccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCCCCCceeee
Confidence 78899999999999988751011114567899999998 6 8999844
No 59
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=76.60 E-value=1.5 Score=34.06 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCC--CCCCc------hHHHHHHHHHHHhcccCCCCCC
Q 043877 8 TSWAMMALIHAGQ--MERGP------TPLHHAAKLLINSQLGEGDFPQ 47 (87)
Q Consensus 8 TaWAL~aLlaag~--~~~~~------~~i~Rgv~~Ll~~Q~~dG~W~e 47 (87)
-+|+++||...-+ |+.++ +.+++-++.|++.|.+||-|.+
T Consensus 268 nGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~ 315 (445)
T 3k11_A 268 NGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQ 315 (445)
T ss_dssp HHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEES
T ss_pred chHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhh
Confidence 5899999986532 22122 3578899999999999999975
No 60
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=76.35 E-value=6.6 Score=32.53 Aligned_cols=72 Identities=13% Similarity=0.067 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCccc--cccccccccccCCCchhHHhHHHHHHHHHhhcCCC
Q 043877 8 TSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQEL--TRAFMGNCMSHYPTYRNIFPTWALAEYRSKFQSPK 85 (87)
Q Consensus 8 TaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~~--~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~~~~ 85 (87)
++.-.|||+.+ .|+.+++-|..+.+.|.+||.++...+ .|.-++..--. .+=..+|+++|+.+|.+.-++..
T Consensus 369 ~~qd~~~~~~~-----~pe~ar~~il~~~~~Q~~dG~v~h~~~p~~~~g~~~~~~~-~~D~~lWl~~av~~Yi~~TGD~~ 442 (822)
T 3rrs_A 369 SNQDLLGFVHL-----IPERARERIIDIASTQFADGSAYHQYQPLTKRGNNDIGSG-FNDDPLWLIAGTAAYIKETGDFS 442 (822)
T ss_dssp HHHHHHHHTTT-----CHHHHHHHHHHHHTTCCTTSCCCSEEETTTTEECTTTCSC-BTTHHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHhc-----CHHHHHHHHHHHHHhhcccCcccceecCcCCCCccCCCCc-ccchHhHHHHHHHHHHHHHCCHH
Confidence 34445555543 356799999999999999999876543 22211100000 13336799999999988766643
No 61
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=76.08 E-value=3.3 Score=22.94 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHhc
Q 043877 10 WAMMALIHAGQMERGPTPLHHAAKLLINSQ 39 (87)
Q Consensus 10 WAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q 39 (87)
-++.||.+.+- | ++|||.||++++
T Consensus 28 ~~~~AL~~t~g---n---ve~Ave~L~~~~ 51 (53)
T 2knz_A 28 ANLQALIATGG---D---INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHTS---C---HHHHHHHHHHCC
T ss_pred HHHHHHHHhCC---C---HHHHHHHHHHcC
Confidence 45667776653 1 889999999865
No 62
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=75.42 E-value=4.1 Score=24.12 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHhccc
Q 043877 10 WAMMALIHAGQMERGPTPLHHAAKLLINSQLG 41 (87)
Q Consensus 10 WAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~ 41 (87)
-|..||.+.+- + ++||+.||++++.+
T Consensus 45 ~a~~AL~~t~~---n---ve~Ave~L~~~~~d 70 (73)
T 1wiv_A 45 VARKALKASGG---D---IEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHHTTS---C---HHHHHHHHHHSCCS
T ss_pred HHHHHHHHhCC---C---HHHHHHHHHhCCCC
Confidence 35667777652 1 88999999998754
No 63
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=75.04 E-value=2.9 Score=25.00 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=18.6
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHhcccC
Q 043877 11 AMMALIHAGQMERGPTPLHHAAKLLINSQLGE 42 (87)
Q Consensus 11 AL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~d 42 (87)
|..||.+.+. | +++++.||++.|.++
T Consensus 46 a~~AL~~~~~---n---ve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 46 VEVALAAADD---D---LTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHTS---C---HHHHHHHHHTCSCSS
T ss_pred HHHHHHHhCC---C---HHHHHHHHHHCCCCC
Confidence 5566666552 1 889999999987654
No 64
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=73.46 E-value=4.1 Score=24.44 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=18.5
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHhcccC
Q 043877 11 AMMALIHAGQMERGPTPLHHAAKLLINSQLGE 42 (87)
Q Consensus 11 AL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~d 42 (87)
++.||.+.+- | |+|||.||++.+-++
T Consensus 47 ~~~AL~~t~G---n---ve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 47 NLQALVATDG---D---IHAAIEMLLGASGPS 72 (74)
T ss_dssp HHHHHHHTTS---C---HHHHHHHHHTCCCCC
T ss_pred HHHHHHHhCC---C---HHHHHHHHHhCCCCC
Confidence 4666766542 1 889999999977554
No 65
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=73.36 E-value=5.6 Score=22.20 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHhccc
Q 043877 11 AMMALIHAGQMERGPTPLHHAAKLLINSQLG 41 (87)
Q Consensus 11 AL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~ 41 (87)
++.||.+.+- | |+|||.||++....
T Consensus 27 n~~AL~~~~G---d---v~~Ave~L~~~~~~ 51 (54)
T 2dah_A 27 NLQALIATGG---D---VDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHTS---C---HHHHHHHHHHHSCS
T ss_pred HHHHHHHcCC---C---HHHHHHHHHhCCCc
Confidence 4666766652 1 89999999987643
No 66
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.54 E-value=3.4 Score=22.10 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHh
Q 043877 9 SWAMMALIHAGQMERGPTPLHHAAKLLINS 38 (87)
Q Consensus 9 aWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~ 38 (87)
..|..||.+.+ + +++|+.||+++
T Consensus 24 ~~a~~AL~~~~----n---~e~A~~~L~~h 46 (47)
T 2ekk_A 24 EHAMEALLNTS----T---MEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHSC----S---HHHHHHHHHTC
T ss_pred HHHHHHHHHcC----C---HHHHHHHHHcC
Confidence 45677888763 2 88999999875
No 67
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.88 E-value=3.5 Score=23.49 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHhccc
Q 043877 9 SWAMMALIHAGQMERGPTPLHHAAKLLINSQLG 41 (87)
Q Consensus 9 aWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~ 41 (87)
..|..||.+.+. + +++|+.||++++.+
T Consensus 24 ~~a~~AL~~t~~---n---ve~A~e~L~~~~~d 50 (63)
T 2dak_A 24 DQALKALRATNN---S---LERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHHHHHTTS---C---SHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCC---C---HHHHHHHHHhCCCC
Confidence 456777877652 2 78899999998754
No 68
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=71.72 E-value=6.3 Score=32.53 Aligned_cols=60 Identities=18% Similarity=0.060 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHHhcccCCCCCCccc--cccccccccccCCCchhHHhHHHHHHHHHhhcCCC
Q 043877 25 PTPLHHAAKLLINSQLGEGDFPQQEL--TRAFMGNCMSHYPTYRNIFPTWALAEYRSKFQSPK 85 (87)
Q Consensus 25 ~~~i~Rgv~~Ll~~Q~~dG~W~e~~~--~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~~~~ 85 (87)
|+.+++-|..+.+.|.+||+.+...+ .|.-++..--. .+=..+|+++|+.+|.+.-++..
T Consensus 374 p~~~r~~il~~~~~Q~~dG~~~h~~~p~~~~g~~~~~~~-~~D~~lW~i~av~~Y~~~TGD~~ 435 (811)
T 3qde_A 374 PERARERLLDLAATQLEDGSAYHQYQPLTKKGNNEIGSN-FNDDPLWLILATAAYIKETGDYS 435 (811)
T ss_dssp HHHHHHHHHHHHTTBCTTSCBCSEECTTTCCEECTTCCC-BTTHHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHhhcccCCCccceecCCCCCCCCCCCCC-cccchhHHHHHHHHHHHHHCCHH
Confidence 56799999999999999998876543 22211100001 13336799999999988766643
No 69
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.12 E-value=6.1 Score=24.00 Aligned_cols=27 Identities=26% Similarity=0.172 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHhcccC
Q 043877 10 WAMMALIHAGQMERGPTPLHHAAKLLINSQLGE 42 (87)
Q Consensus 10 WAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~d 42 (87)
-|..||.+.+ . .+++|+.||++++.+.
T Consensus 45 ~a~~AL~~t~-~-----nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 45 RATKALQLNH-M-----SVPQAMEWLIEHAEDP 71 (83)
T ss_dssp HHHHHHHHTT-S-----CHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHhC-C-----CHHHHHHHHHHCCCCc
Confidence 4566777652 1 2889999999987543
No 70
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=68.25 E-value=5.7 Score=29.29 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCC--CCCCc------hHHHHHHHHHHHhccc-CCCCCC
Q 043877 8 TSWAMMALIHAGQ--MERGP------TPLHHAAKLLINSQLG-EGDFPQ 47 (87)
Q Consensus 8 TaWAL~aLlaag~--~~~~~------~~i~Rgv~~Ll~~Q~~-dG~W~e 47 (87)
-+|+++||...-+ |..++ +..++-++.|++.|.+ ||-|.+
T Consensus 215 ~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~ 263 (373)
T 1nc5_A 215 IGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQ 263 (373)
T ss_dssp HHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBS
T ss_pred HhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceee
Confidence 4899999986543 22121 2467778999999986 999984
No 71
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=66.62 E-value=11 Score=27.08 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHh-cccCCCCCCcc-ccccccccccccCCCchhHHhHHHHHHHHHhhcC
Q 043877 26 TPLHHAAKLLINS-QLGEGDFPQQE-LTRAFMGNCMSHYPTYRNIFPTWALAEYRSKFQS 83 (87)
Q Consensus 26 ~~i~Rgv~~Ll~~-Q~~dG~W~e~~-~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~~ 83 (87)
+.++++++||++. +.++|+|--.. ..|.... -.-..|.+.|-|+||..+.+..++
T Consensus 77 ~~A~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~---~~~~~~~~af~i~al~~~y~~tg~ 133 (388)
T 2gz6_A 77 KIARNGAKFLAQHGRDDEGNWYFALTRGGEPLV---QPYNIFSDCFAAMAFSQYALASGE 133 (388)
T ss_dssp HHHHHHHHHHHHHSBCTTSCBCSEECTTSCBCC---CCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEcCCCCccc---CCcchHHHHHHHHHHHHHHHHhCC
Confidence 4689999999987 56678775332 2333111 134567899999999986554443
No 72
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=65.17 E-value=7.3 Score=23.85 Aligned_cols=25 Identities=28% Similarity=0.105 Sum_probs=17.7
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHhcc
Q 043877 10 WAMMALIHAGQMERGPTPLHHAAKLLINSQL 40 (87)
Q Consensus 10 WAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~ 40 (87)
-|..||.+.+- + ++||+.||+++|.
T Consensus 45 ~A~~AL~~t~g---d---ve~A~e~L~sh~~ 69 (83)
T 1veg_A 45 VAEAALRVFGG---N---VQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHTTT---C---HHHHHHHHHHHTS
T ss_pred HHHHHHHHcCC---C---HHHHHHHHHhCCC
Confidence 35556665541 1 8999999999875
No 73
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=63.32 E-value=8.6 Score=21.82 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHh
Q 043877 11 AMMALIHAGQMERGPTPLHHAAKLLINS 38 (87)
Q Consensus 11 AL~aLlaag~~~~~~~~i~Rgv~~Ll~~ 38 (87)
++.||.+.+- | ++|||.||++.
T Consensus 35 ~~~AL~~~~g---n---ve~Ave~L~~~ 56 (58)
T 1wr1_B 35 NVAALRRSGG---S---VQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHTS---C---HHHHHHHHHHT
T ss_pred HHHHHHHhCC---C---HHHHHHHHHhC
Confidence 4566666552 1 88999999974
No 74
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=61.30 E-value=7.5 Score=20.93 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=14.9
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHH
Q 043877 11 AMMALIHAGQMERGPTPLHHAAKLLIN 37 (87)
Q Consensus 11 AL~aLlaag~~~~~~~~i~Rgv~~Ll~ 37 (87)
++.||.+.+- | ++|||.||++
T Consensus 25 ~~~AL~~~~g---n---v~~Ave~L~~ 45 (46)
T 2bwb_A 25 NVAALRRSGG---S---VQGALDSLLN 45 (46)
T ss_dssp HHHHHHHHTT---C---HHHHHHHHHC
T ss_pred HHHHHHHhCC---C---HHHHHHHHHc
Confidence 4667776652 1 8899999985
No 75
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=60.67 E-value=8.4 Score=23.49 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhccc
Q 043877 28 LHHAAKLLINSQLG 41 (87)
Q Consensus 28 i~Rgv~~Ll~~Q~~ 41 (87)
+++|+.||+++..+
T Consensus 49 ~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 49 LDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHCcCC
Confidence 88999999997754
No 76
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=60.60 E-value=8.9 Score=19.87 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=14.2
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHh
Q 043877 11 AMMALIHAGQMERGPTPLHHAAKLLINS 38 (87)
Q Consensus 11 AL~aLlaag~~~~~~~~i~Rgv~~Ll~~ 38 (87)
|..||.+.+. + +++|+.||+++
T Consensus 21 a~~AL~~~~~---n---~e~A~~~L~~~ 42 (43)
T 2g3q_A 21 AHNALEKCNW---D---LEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHTS---C---HHHHHHHHHTC
T ss_pred HHHHHHHhCc---C---HHHHHHHHHcC
Confidence 4556666532 1 78899999863
No 77
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=60.56 E-value=9.3 Score=30.73 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCC
Q 043877 8 TSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGD 44 (87)
Q Consensus 8 TaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~ 44 (87)
|.++++||+ .+ +|+..++-+.++.+.|.+||+
T Consensus 351 ~~~~~~~l~-~~----~p~~ar~~l~~~~~~Q~~~G~ 382 (807)
T 1v7w_A 351 TAQDAISVP-HA----NPEMTRKRIVDLLRGQVKAGY 382 (807)
T ss_dssp HHHHTTSCT-TT----CHHHHHHHHHHHHHTBCTTSC
T ss_pred HhHHHHHHh-hc----CHHHHHHHHHHHHhccccCCC
Confidence 444555554 33 456788899999999999997
No 78
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=60.34 E-value=12 Score=28.53 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=40.9
Q ss_pred hHhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccC----CCCCCccccccccccccccCCCchhHHhHHHHHH
Q 043877 4 NLVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGE----GDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAE 76 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~d----G~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~ 76 (87)
.+.-.=|+|-||--.+..+.+++..++-|+|+++.|.++ ||+.-.... .+++.-+-.=|.-..+|.|.+|.-
T Consensus 31 R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~-~~~g~~~~~~hl~~Ty~Al~~L~i 106 (390)
T 3dra_B 31 KLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRSTHYF-QKTNQKYDCPNLSSTLFALYNLLI 106 (390)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECSSGGG-GGSCTTTSCCBHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCCCccC-CCCCCccCcccHHHHHHHHHHHHH
Confidence 344556899999888876323445677899999988764 555433211 123321111233344556666653
No 79
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=60.03 E-value=6.7 Score=21.57 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHh
Q 043877 10 WAMMALIHAGQMERGPTPLHHAAKLLINS 38 (87)
Q Consensus 10 WAL~aLlaag~~~~~~~~i~Rgv~~Ll~~ 38 (87)
-++.||.+.+- | +++||.||+++
T Consensus 29 ~~~~AL~~t~g---n---~e~A~e~L~~~ 51 (52)
T 2jy5_A 29 ANLQALIATGG---D---INAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHHTT---C---HHHHHHHHTTC
T ss_pred HHHHHHHHhCC---C---HHHHHHHHHhC
Confidence 35677777653 1 88999999864
No 80
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=52.87 E-value=19 Score=22.80 Aligned_cols=27 Identities=19% Similarity=0.064 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHhccc
Q 043877 10 WAMMALIHAGQMERGPTPLHHAAKLLINSQLG 41 (87)
Q Consensus 10 WAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~ 41 (87)
-|-.||.+.+.. .+++++.||++++..
T Consensus 19 ~a~~AL~~t~n~-----~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 19 ACRKAVYFTGNM-----GAEVAFNWIIVHMEE 45 (126)
T ss_dssp HHHHHHHHHTSC-----CHHHHHHHHHHGGGC
T ss_pred HHHHHHHHcCCC-----CHHHHHHHHHHhccc
Confidence 355677776542 288999999998864
No 81
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=51.43 E-value=12 Score=20.25 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=14.5
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHh
Q 043877 11 AMMALIHAGQMERGPTPLHHAAKLLINS 38 (87)
Q Consensus 11 AL~aLlaag~~~~~~~~i~Rgv~~Ll~~ 38 (87)
|..||.+.+. + ++||+.||++.
T Consensus 25 a~~AL~~~~~---n---~e~A~e~L~~g 46 (49)
T 1ify_A 25 VVAALRASYN---N---PHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHTTTS---C---SHHHHHHHHHC
T ss_pred HHHHHHHhCC---C---HHHHHHHHHhC
Confidence 4556665442 2 67899999873
No 82
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=49.63 E-value=2.8 Score=31.55 Aligned_cols=23 Identities=9% Similarity=0.328 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhcccCCCCCCc
Q 043877 26 TPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 26 ~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
+.|+++++|+++.+.++|.|+..
T Consensus 254 ~~i~~~l~~l~~~~~~~g~wp~~ 276 (411)
T 3e6u_A 254 SLVKPSVDYVCQLKFPSGNYPPC 276 (411)
T ss_dssp HTHHHHHHHHHHTCCTTSCCCSB
T ss_pred HHHHHHHHHHHHhhccCCCCCCC
Confidence 35899999999999989999863
No 83
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=48.54 E-value=17 Score=26.76 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHhcc-cC-CCCCCccccccccccccccCCCchhHHhHHHHHHHHH
Q 043877 26 TPLHHAAKLLINSQL-GE-GDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRS 79 (87)
Q Consensus 26 ~~i~Rgv~~Ll~~Q~-~d-G~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~ 79 (87)
+.+++|++||++... ++ |+|--....|. ..-.+-..|.+.|-|+||..|..
T Consensus 75 ~~A~~~~~fl~~~~~d~~~Gg~~~~~~dG~---~~~~~~~lyd~Af~i~al~~~~~ 127 (402)
T 3gt5_A 75 DAVHHGLSYVRDVHRNPATGGYAWTLCDDR---VEDDTNHCYGLAFVMLAYSCGLK 127 (402)
T ss_dssp HHHHHHHHHHHHTTBCTTTSCBCSEEETTE---EEECCEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCCCCcEEEEeeCCC---CCcCCcchHHHHHHHHHHHHHHH
Confidence 468899999998643 34 77754433332 11234567889999999999865
No 84
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=48.38 E-value=22 Score=22.66 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHh
Q 043877 9 SWAMMALIHAGQMERGPTPLHHAAKLLINS 38 (87)
Q Consensus 9 aWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~ 38 (87)
.-++.||.+.+- | |+|||.||++.
T Consensus 82 ~~ni~AL~~t~G---d---ve~AVe~L~~~ 105 (108)
T 2cwb_A 82 ELSLRALQATGG---D---IQAALELIFAG 105 (108)
T ss_dssp HHHHHHHHHHTS---C---HHHHHHHHHHT
T ss_pred HHHHHHHHHhCC---C---HHHHHHHHHhc
Confidence 456777877762 2 88999999984
No 85
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=48.13 E-value=21 Score=28.46 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=25.3
Q ss_pred HHHHHHHHH----HhCCCCCCchHHHHHHHHHHH---hc---ccCCCCC
Q 043877 8 TSWAMMALI----HAGQMERGPTPLHHAAKLLIN---SQ---LGEGDFP 46 (87)
Q Consensus 8 TaWAL~aLl----aag~~~~~~~~i~Rgv~~Ll~---~Q---~~dG~W~ 46 (87)
.|++++||+ .+|.. +..++..+||.+ .| ++||+|+
T Consensus 55 aa~t~~aL~~~~~~~G~~----~~a~~~~~~l~~~~~lQ~~y~~~G~~~ 99 (599)
T 2vn4_A 55 SALVFKNLIDRFTETYDA----GLQRRIEQYITAQVTLQGLSNPSGSLA 99 (599)
T ss_dssp HHHHHHHHHHHHHHSBCH----HHHHHHHHHHHHHHHHHHCCBTTBCST
T ss_pred HHHHHHHHHHHHHhCCCH----HHHHHHHHHHhcccceeeeeCCCCCcc
Confidence 455666666 77753 357889999974 66 7899984
No 86
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=46.08 E-value=27 Score=22.27 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=23.6
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 10 WAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 10 WAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
=|..||...+- | +.+||.+|++.-...|.|.+.
T Consensus 56 eAr~AL~~~ng---D---l~~AI~~Lleg~~~~~~W~~~ 88 (104)
T 1wj7_A 56 ECVIALHDCNG---D---VNRAINVLLEGNPDTHSWEMV 88 (104)
T ss_dssp HHHHHHHHHTS---C---HHHHHHHHHTCSSSCSSCSSC
T ss_pred HHHHHHHHcCC---C---HHHHHHHHHhCCCcCCceeee
Confidence 35667766552 2 889999999866556889764
No 87
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=41.74 E-value=58 Score=23.53 Aligned_cols=55 Identities=9% Similarity=0.034 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHhc-ccCC--CCCCcc-ccccccccccccCCCchhHHhHHHHHHHHHhhcC
Q 043877 26 TPLHHAAKLLINSQ-LGEG--DFPQQE-LTRAFMGNCMSHYPTYRNIFPTWALAEYRSKFQS 83 (87)
Q Consensus 26 ~~i~Rgv~~Ll~~Q-~~dG--~W~e~~-~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~~ 83 (87)
+.++++++||++.. .++| +|--.. ..|.- .......|.+.|-++|+..+.+.-++
T Consensus 82 ~~A~~~~~fl~~~~~d~~gg~g~~~s~d~dg~~---~~~~~~lyd~af~~~a~~~~~~atgd 140 (402)
T 1fp3_A 82 DAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRP---VKVQRSIFSECFYTMAMNELWRVTAE 140 (402)
T ss_dssp HHHHHHHHHHHHHTBSSTTSCCBCSEECTTSCE---EECCSSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccCcCCCCceEEEECCCCCc---cccccchHHHHHHHHHHHHHHHHhCC
Confidence 46899999999874 4344 665221 22321 12266788899999999988765443
No 88
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=40.72 E-value=3.5 Score=29.01 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=13.0
Q ss_pred HHHHHHHhcccCCCCCCcc
Q 043877 31 AAKLLINSQLGEGDFPQQE 49 (87)
Q Consensus 31 gv~~Ll~~Q~~dG~W~e~~ 49 (87)
+-..|++.+++||+||++.
T Consensus 212 ~Q~illE~r~~dg~WP~~~ 230 (231)
T 3jyu_A 212 GQVLVIEPQNEDGTWPRQS 230 (231)
T ss_dssp TEEEEEEECCTTSCCCC--
T ss_pred CCEEEEEEecCCCCCCccc
Confidence 3345677788999999864
No 89
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=39.54 E-value=37 Score=28.11 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=33.1
Q ss_pred HhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCC--cccccc---ccc
Q 043877 5 LVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQ--QELTRA---FMG 56 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e--~~~~G~---f~~ 56 (87)
..+|.-+|+||..-+.. ++.|+||+.||.+.- ..|.+ ..++|. ||.
T Consensus 84 ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl---~~~~~~~~~~vgfeiifP~ 134 (764)
T 3p5p_A 84 LLNTTNSVIALSVWKTG---HSQVQQGAEFIAENL---RLLNEEDELSPDFQIIFPA 134 (764)
T ss_dssp HHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH---TTCCTTSCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH---HhhcCCCCCCceeeeeHHH
Confidence 57899999999996643 357999999998754 22543 345565 554
No 90
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=38.77 E-value=35 Score=28.45 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=26.5
Q ss_pred HhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc
Q 043877 5 LVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQ 39 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q 39 (87)
...|.-+|+||..-+.. ++.|+||+.||.+.-
T Consensus 132 ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 163 (817)
T 3sdr_A 132 LLATLSCVLVLLKWNVG---DLQVEQGIEFIKSNL 163 (817)
T ss_dssp HHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Confidence 57899999999997643 357999999999754
No 91
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=36.14 E-value=4.4 Score=28.17 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=10.5
Q ss_pred HHHHHhcccCCCCCCc
Q 043877 33 KLLINSQLGEGDFPQQ 48 (87)
Q Consensus 33 ~~Ll~~Q~~dG~W~e~ 48 (87)
..|++.++.||+||++
T Consensus 202 ~illE~r~~dg~WP~~ 217 (217)
T 4a3p_A 202 VLVIEQKNEDGTWPRG 217 (217)
T ss_dssp EEEEEECCCC-CCCC-
T ss_pred EEEEEEecCCCCCCCC
Confidence 3456777899999864
No 92
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=34.63 E-value=25 Score=22.89 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHhcccCCCCCCc
Q 043877 26 TPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 26 ~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
.++++|+.||-+..-+++ |..+
T Consensus 84 ~a~d~A~~fl~~~~lP~~-W~~d 105 (117)
T 2yrv_A 84 PGLQKASIFLKTRVVPDN-WKMD 105 (117)
T ss_dssp HHHHHHHHHHHTCCCCTT-TCCS
T ss_pred HHHHHHHHHHhcCCCCCc-ccch
Confidence 379999999999999988 9864
No 93
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=33.65 E-value=41 Score=21.43 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHHhcc
Q 043877 11 AMMALIHAGQMERGPTPLHHAAKLLINSQL 40 (87)
Q Consensus 11 AL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~ 40 (87)
+..||.+.|. + +++++.||+.++.
T Consensus 25 ~~kAl~~~g~-~-----~e~amewL~~h~~ 48 (118)
T 4ae4_A 25 VLRAMKAAGA-N-----IEQILDYLFAHGQ 48 (118)
T ss_dssp HHHHHHHHCS-C-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHCc-C-----HHHHHHHHHHhch
Confidence 4456666553 1 6779999999873
No 94
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=32.46 E-value=44 Score=27.61 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=33.1
Q ss_pred HhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhccc-CCCCCCcccccc---ccc
Q 043877 5 LVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLG-EGDFPQQELTRA---FMG 56 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~-dG~W~e~~~~G~---f~~ 56 (87)
..+|.-+++||..-+.. ++.|+||+.||.+.-.. ++.=.+..++|. ||.
T Consensus 81 ll~TLAcvlAL~~w~~~---~~~i~rGl~fl~~nl~~~~~~~~~~~pvGfeiifP~ 133 (727)
T 3pya_A 81 LINTLACVVALRSWNLF---PHQCNKGITFFRENIGKLEDENDEHMPIGFEVAFPS 133 (727)
T ss_dssp HHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHGGGTTCCSSCCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHhhccCCCCCCceeeeeHHH
Confidence 58999999999996543 35799999999875432 111123455665 665
No 95
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=32.10 E-value=32 Score=18.57 Aligned_cols=22 Identities=9% Similarity=0.145 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHhcccCCCCCC
Q 043877 26 TPLHHAAKLLINSQLGEGDFPQ 47 (87)
Q Consensus 26 ~~i~Rgv~~Ll~~Q~~dG~W~e 47 (87)
.+.+.=|+||++.+...++|..
T Consensus 17 ~~akdFv~WL~~~k~~~~d~~~ 38 (42)
T 2b4n_A 17 IHQQDFVNWLLAQKGKKNDWKH 38 (42)
T ss_dssp HHHHHHHHHHHHTTCCCCCTTC
T ss_pred HHHHHHHHHHHhCCCcCcchhc
Confidence 3577789999998877777753
No 96
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=31.59 E-value=20 Score=25.47 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=14.4
Q ss_pred CchHHHHHHHHHHHhc
Q 043877 24 GPTPLHHAAKLLINSQ 39 (87)
Q Consensus 24 ~~~~i~Rgv~~Ll~~Q 39 (87)
+|+.++|+|.||..+|
T Consensus 184 np~~L~rai~YLe~H~ 199 (200)
T 3gox_A 184 NPKFLEKVIEYLKKYE 199 (200)
T ss_dssp CHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcc
Confidence 6789999999999886
No 97
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=30.92 E-value=48 Score=27.53 Aligned_cols=32 Identities=9% Similarity=0.097 Sum_probs=26.3
Q ss_pred HhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc
Q 043877 5 LVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQ 39 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q 39 (87)
...|.-+|+||..-+.. ++.|+||+.||.+.-
T Consensus 105 l~~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 136 (785)
T 3s9v_A 105 ILATLACIITLTLWRTG---ETQVQKGIEFFRTQA 136 (785)
T ss_dssp HHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccC---HHHHHHHHHHHHHHH
Confidence 67899999999997643 357999999998754
No 98
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*
Probab=30.12 E-value=1.1e+02 Score=23.77 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCC
Q 043877 7 QTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQ 47 (87)
Q Consensus 7 qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e 47 (87)
.|+|.++||+..+.+ +..+.=++.+...|..+|-.+.
T Consensus 130 Ds~f~~~gLl~~~~~----~~A~~~l~~~~~~~~~~G~IPn 166 (535)
T 2jg0_A 130 DSYFTMLGLAESGHW----DKVADMVANFAHEIDTYGHIPN 166 (535)
T ss_dssp HHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHcCCH----HHHHHHHHHHHHhhccCCcccC
Confidence 589999999997643 4466667888898988886554
No 99
>1qaz_A Protein (alginate lyase A1-III); crystals,; 1.78A {Sphingomonas SP} SCOP: a.102.3.1 PDB: 1hv6_A 3ew4_A* 4e25_A* 3evh_A 3evl_A* 4e1y_A 4e23_A*
Probab=29.15 E-value=43 Score=25.10 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHH---HhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhhc
Q 043877 10 WAMMALIHAGQMERGPTPLHHAAKLLI---NSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKFQ 82 (87)
Q Consensus 10 WAL~aLlaag~~~~~~~~i~Rgv~~Ll---~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~ 82 (87)
|+.+++++.+.-..|++.+++++.... ....+||.-++|-..| .--++|+.| ++-|+..+++..+..+
T Consensus 192 W~~~~v~aiav~~~d~~l~~~av~~~~~~~~QI~~DG~~P~El~R~----t~s~~Ys~f-aL~~l~~lA~~a~~~G 262 (351)
T 1qaz_A 192 WRGQEATIIGVISKDDELFRWGLGRYVQAMGLINEDGSFVHEMTRH----EQSLHYQNY-AMLPLTMIAETASRQG 262 (351)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTBCTTSCBTTGGGSG----GGHHHHHHH-HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCCccccccC----CCchHHHHH-HHHHHHHHHHHHHHcC
Confidence 334444444433335556777777653 2235677665554322 346677776 4577777777766443
No 100
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=27.46 E-value=11 Score=21.90 Aligned_cols=15 Identities=7% Similarity=0.321 Sum_probs=11.0
Q ss_pred HHHHhcccCCCCCCc
Q 043877 34 LLINSQLGEGDFPQQ 48 (87)
Q Consensus 34 ~Ll~~Q~~dG~W~e~ 48 (87)
++-..|++||+|.-+
T Consensus 12 ~I~~s~RpDGT~RK~ 26 (58)
T 1rk8_C 12 FIPATKRPDGTWRKA 26 (58)
T ss_dssp EECCEECTTSCEECC
T ss_pred EcccccCCCCccccc
Confidence 344679999999654
No 101
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=26.38 E-value=79 Score=23.04 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhCCCCCCchHHHHHHHHHHH-hcccCCCCCCc
Q 043877 7 QTSWAMMALIHAGQMERGPTPLHHAAKLLIN-SQLGEGDFPQQ 48 (87)
Q Consensus 7 qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~-~Q~~dG~W~e~ 48 (87)
.|+|.++||+..+ ++...+.+.-+.+ .|.++|..+..
T Consensus 35 Ds~~~~~gl~~~~-----~~~a~~~l~~~~~~~q~~~G~ip~~ 72 (420)
T 2z07_A 35 DSAFIALGWTQVD-----WERAWQELLCLFDYGQGPDGMLPHI 72 (420)
T ss_dssp HHHHHHHHHTTTC-----HHHHHHHHHHHHHHHCCTTCCCCSE
T ss_pred HHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHhhCCCccee
Confidence 5789999998643 3456777877777 99999977643
No 102
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=25.91 E-value=32 Score=18.34 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHHhc
Q 043877 10 WAMMALIHAGQMERGPTPLHHAAKLLINSQ 39 (87)
Q Consensus 10 WAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q 39 (87)
-|+.||.+.+ . + +++++.||.++.
T Consensus 20 ~a~~Al~a~~-~--n---~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 20 LVIQAYFACE-K--N---ENLAANFLLSQN 43 (47)
T ss_dssp HHHHHHTTTT-S--C---HHHHHHHTTSCC
T ss_pred HHHHHHHHcC-C--C---HHHHHHHHHhCc
Confidence 3556666655 1 2 788999998754
No 103
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=24.35 E-value=1.1e+02 Score=22.62 Aligned_cols=57 Identities=9% Similarity=0.029 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcccCCCCCCccccccccccccccCCCchhHHhHHHHHHHHHhhcC
Q 043877 27 PLHHAAKLLINSQLGEGDFPQQELTRAFMGNCMSHYPTYRNIFPTWALAEYRSKFQS 83 (87)
Q Consensus 27 ~i~Rgv~~Ll~~Q~~dG~W~e~~~~G~f~~~~~i~Y~~Y~~~fPl~ALg~y~~~~~~ 83 (87)
.|++.++-|++.+.++|.+.+..+.|.....--+.--.|.+-|=+-+|-++-+..++
T Consensus 30 ~l~~~~~~l~~~~~~~~~f~~~~~~~~~~d~k~~~~W~Wt~G~~~~gl~~~ye~Tgd 86 (382)
T 3pmm_A 30 LIRNVTQNLVNIKDESGQFLLRLDDGRVIDTKGWAGWEWTHGVGLYGIYQYYQQTGD 86 (382)
T ss_dssp HHHHHHHHHHHCCCTTCTTCEECTTSCEECSSSTTSCSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccCccccccccCCccccccCCCCcCccccHHHHHHHHHHHHHHHCC
Confidence 577788888887777788877666555333333444556677777777666554443
No 104
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=23.48 E-value=1.6e+02 Score=23.59 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhcccCCC
Q 043877 27 PLHHAAKLLINSQLGEGD 44 (87)
Q Consensus 27 ~i~Rgv~~Ll~~Q~~dG~ 44 (87)
.++=|++||+++|.++|.
T Consensus 195 E~rWg~D~llkm~~~~g~ 212 (586)
T 3h7l_A 195 EALFGADFLVRMQNEKGF 212 (586)
T ss_dssp HHHHHHHHHHHTBCTTSC
T ss_pred HHHHHHHHHHhcccCCCe
Confidence 466799999999988763
No 105
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=23.22 E-value=49 Score=24.03 Aligned_cols=23 Identities=9% Similarity=0.041 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHHhcc--cCCC-CCC
Q 043877 25 PTPLHHAAKLLINSQL--GEGD-FPQ 47 (87)
Q Consensus 25 ~~~i~Rgv~~Ll~~Q~--~dG~-W~e 47 (87)
.+.++++++|+++.+. ++|. |+.
T Consensus 229 ~~~~~~~~~~l~~~~~~~~~g~~wp~ 254 (409)
T 2g0d_A 229 LSALQKIIFIYEKFELERKKQFLWKD 254 (409)
T ss_dssp HHHHHHHHHHHHHHCCCGGGTTCCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcCCC
Confidence 3579999999987764 6677 876
No 106
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=22.86 E-value=1e+02 Score=24.60 Aligned_cols=39 Identities=21% Similarity=0.049 Sum_probs=31.1
Q ss_pred HhhHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcccCCCCCCcc
Q 043877 5 LVQTSWAMMALIHAGQMERGPTPLHHAAKLLINSQLGEGDFPQQE 49 (87)
Q Consensus 5 ~~qTaWAL~aLlaag~~~~~~~~i~Rgv~~Ll~~Q~~dG~W~e~~ 49 (87)
+..|.|..++|+..|. + .++=+++|++..++.|-++|+.
T Consensus 600 ~~~t~~~a~al~~~G~-~-----A~~~~~~l~~~a~~~gllpE~~ 638 (684)
T 1lf6_A 600 PLLTGERGMYEIAAGK-D-----ATPYVKAMEKFANEGGIISEQV 638 (684)
T ss_dssp HHHHHHHHHHHHHTTC-C-----CHHHHHHHHHHSCTTSCCCSCB
T ss_pred HHHHHHHHHHHHHhCh-H-----HHHHHHHHHHhcccCCccCeee
Confidence 3689999999999996 1 4456777888888889888875
No 107
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=22.41 E-value=63 Score=18.17 Aligned_cols=25 Identities=28% Similarity=0.181 Sum_probs=19.8
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHHH
Q 043877 10 WAMMALIHAGQMERGPTPLHHAAKLLIN 37 (87)
Q Consensus 10 WAL~aLlaag~~~~~~~~i~Rgv~~Ll~ 37 (87)
=|+.||++-|+.. ..++++|+-+.+
T Consensus 19 ea~~AL~aLGY~~---~ea~kav~~v~~ 43 (62)
T 1ixs_A 19 EAVMALAALGFKE---AQARAVVLDLLA 43 (62)
T ss_dssp HHHHHHHHTTCCH---HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCH---HHHHHHHHHHHh
Confidence 4999999999975 348888887743
No 108
>2dbs_A Hypothetical protein TTHC002; extremely thermophili bacteria, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} SCOP: d.374.1.1
Probab=22.33 E-value=52 Score=20.20 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=20.1
Q ss_pred CCchHHHHHHHHHHHhcccCCCCCCc
Q 043877 23 RGPTPLHHAAKLLINSQLGEGDFPQQ 48 (87)
Q Consensus 23 ~~~~~i~Rgv~~Ll~~Q~~dG~W~e~ 48 (87)
++|+...+++.|-++.-++.| |+.-
T Consensus 40 dePEvaa~AL~~A~eapn~EG-wP~V 64 (90)
T 2dbs_A 40 DEPEVAAQALAWAMEAPNPEG-WPSV 64 (90)
T ss_dssp TCHHHHHHHHHHHHSCCCSSS-SCEE
T ss_pred CCHHHHHHHHHHHHhCCCCCC-ChhH
Confidence 468889999999998878877 9743
No 109
>3s88_J GP2, GP2, envelope glycoprotein; glycosylation, viral membrane, immune system-viral protein C; HET: NAG; 3.35A {Sudan ebolavirus} PDB: 3ve0_J* 3csy_J* 2lcy_A 2lcz_A
Probab=20.65 E-value=1.2e+02 Score=20.58 Aligned_cols=38 Identities=18% Similarity=0.071 Sum_probs=27.8
Q ss_pred hHhhHHHHHHHHHHhCCCCCCc-hHHHHHHHHHHHhccc
Q 043877 4 NLVQTSWAMMALIHAGQMERGP-TPLHHAAKLLINSQLG 41 (87)
Q Consensus 4 t~~qTaWAL~aLlaag~~~~~~-~~i~Rgv~~Ll~~Q~~ 41 (87)
.+-+|.-+|..++.+--..++- -.=++||+||+-+|-.
T Consensus 89 lAN~Tt~~L~l~Lr~ttelRt~sl~NR~AIDFLL~rwGg 127 (167)
T 3s88_J 89 LANETTQALQLFLRATTELRTYTILNRKAIDFLLRRWGG 127 (167)
T ss_dssp HHHHHHHHHHHHHHHCCCSEECTHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCC
Confidence 3568999999999887554432 2347899999998843
No 110
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=20.59 E-value=89 Score=15.19 Aligned_cols=8 Identities=50% Similarity=0.555 Sum_probs=5.2
Q ss_pred HHHHHHHH
Q 043877 28 LHHAAKLL 35 (87)
Q Consensus 28 i~Rgv~~L 35 (87)
+++|+.||
T Consensus 32 ~e~A~~~L 39 (40)
T 1z96_A 32 LDVAASFL 39 (40)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666666
No 111
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=20.02 E-value=1.1e+02 Score=23.78 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=24.5
Q ss_pred HHHHHHHHH---HhCCCCCCchHHHHHHHHHHH---hc---ccCCCCC
Q 043877 8 TSWAMMALI---HAGQMERGPTPLHHAAKLLIN---SQ---LGEGDFP 46 (87)
Q Consensus 8 TaWAL~aLl---aag~~~~~~~~i~Rgv~~Ll~---~Q---~~dG~W~ 46 (87)
.|.++.||+ ..|..+ ..++..+||.. .| +++|.|.
T Consensus 56 aa~t~~aL~~~~~~G~~~----~a~~~~~~l~~~~~lQ~~~~~~G~l~ 99 (472)
T 1gai_A 56 SGLVIKTLVDLFRNGDTD----LLSTIEHYISSQAIIQGVSNPSGDLS 99 (472)
T ss_dssp HHHHHHHHHHHHHTTCGG----GHHHHHHHHHHHHHHHHCCBTTBCTT
T ss_pred HHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHhhcccCCCCccc
Confidence 466777777 788642 36777788876 34 6788887
Done!