BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043880
         (355 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
           Borrelia Burgdorferi
 pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
           Borrelia Burgdorferi
          Length = 501

 Score = 29.3 bits (64), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 281 VNYFK-SLPIKRTACVHNSGHLINMLHTCYAAAGNRWAN------FVAVDYYKRSEGRGS 333
           + YFK +L I      H   H IN +         +W +      F+ +DY K S+ RG+
Sbjct: 247 LEYFKDALDIHLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGN 306

Query: 334 FQAVDTLNGRLLCGCDDVHAC 354
           F  V  L  +     D  + C
Sbjct: 307 FITVKDLEDQNFSPLDFRYLC 327


>pdb|4DWS|C Chain C, Crystal Structure Of A Chitinase From The Yersinia
           Entomophaga Toxin Complex
          Length = 546

 Score = 28.9 bits (63), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 108 QEDNVTQQLKNGVRGLMLDTYDFKGDVWLCHSFGGKCHDYTAFEPAIDTLKEIEA 162
           ++ N+ Q + NG+  + L +YDF G +W  +  G   + Y+  +P    L ++ A
Sbjct: 317 KKSNIDQLVANGLDNIYLMSYDFFGTIWADY-IGHHTNLYSPKDPGEQELFDLSA 370


>pdb|4DWS|D Chain D, Crystal Structure Of A Chitinase From The Yersinia
           Entomophaga Toxin Complex
          Length = 546

 Score = 28.9 bits (63), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 108 QEDNVTQQLKNGVRGLMLDTYDFKGDVWLCHSFGGKCHDYTAFEPAIDTLKEIEA 162
           ++ N+ Q + NG+  + L +YDF G +W  +  G   + Y+  +P    L ++ A
Sbjct: 317 KKSNIDQLVANGLDNIYLMSYDFFGTIWADY-IGHHTNLYSPKDPGEQELFDLSA 370


>pdb|4DWS|A Chain A, Crystal Structure Of A Chitinase From The Yersinia
           Entomophaga Toxin Complex
          Length = 546

 Score = 28.5 bits (62), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 111 NVTQQLKNGVRGLMLDTYDFKGDVWLCHSFGGKCHDYTAFEPAIDTLKEIEA 162
           N+ Q + NG+  + L +YDF G +W  +  G   + Y+  +P    L ++ A
Sbjct: 320 NIDQLVANGLDNIYLMSYDFFGTIWADY-IGHHTNLYSPKDPGEQELFDLSA 370


>pdb|4DWS|B Chain B, Crystal Structure Of A Chitinase From The Yersinia
           Entomophaga Toxin Complex
          Length = 546

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 111 NVTQQLKNGVRGLMLDTYDFKGDVWLCHSFGGKCHDYTAFEPAIDTLKEIEA 162
           N+ Q + NG+  + L +YDF G +W  +  G   + Y+  +P    L ++ A
Sbjct: 320 NIDQLVANGLDNIYLMSYDFFGTIWADY-IGHHTNLYSPKDPGEQELFDLSA 370


>pdb|1QQW|A Chain A, Crystal Structure Of Human Erythrocyte Catalase
 pdb|1QQW|B Chain B, Crystal Structure Of Human Erythrocyte Catalase
 pdb|1QQW|C Chain C, Crystal Structure Of Human Erythrocyte Catalase
 pdb|1QQW|D Chain D, Crystal Structure Of Human Erythrocyte Catalase
 pdb|1F4J|A Chain A, Structure Of Tetragonal Crystals Of Human Erythrocyte
           Catalase
 pdb|1F4J|B Chain B, Structure Of Tetragonal Crystals Of Human Erythrocyte
           Catalase
 pdb|1F4J|C Chain C, Structure Of Tetragonal Crystals Of Human Erythrocyte
           Catalase
 pdb|1F4J|D Chain D, Structure Of Tetragonal Crystals Of Human Erythrocyte
           Catalase
          Length = 527

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 12/108 (11%)

Query: 90  AIDHTPSHTGVPRLTFTNQEDNVTQQLKNGVRGLMLDTYDFKGDVWLCHSFGGKCHDYTA 149
           A++H+  ++G  R   T  +DNVTQ     VR   ++  + +    LC +  G   D   
Sbjct: 418 ALEHSIQYSGEVRRFNTANDDNVTQ-----VRAFYVNVLNEEQRKRLCENIAGHLKDAQI 472

Query: 150 F--EPAIDTLKEIEAFMSSKPAEIVTLILEDY-VQAPNGLTKVFAEAG 194
           F  + A+    E+     S     +  +L+ Y  + P      F ++G
Sbjct: 473 FIQKKAVKNFTEVHPDYGSH----IQALLDKYNAEKPKNAIHTFVQSG 516


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,567,662
Number of Sequences: 62578
Number of extensions: 439277
Number of successful extensions: 780
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 8
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)