BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043882
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WT7|A Chain A, Crystal Structure Of The Bzip Heterodimeric Complex
Mafb:cfos Bound To Dna
Length = 63
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 39/58 (67%)
Query: 370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYF 427
E+R+ R +N+ +AA+ R R++ T L+AE +QL++E + L+ +A + ++K++ F
Sbjct: 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58
>pdb|1FOS|E Chain E, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|G Chain G, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 39/57 (68%)
Query: 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYF 427
+R+ R +N+ +AA+SR R++ T L+AE +QL++E + L+ +A + ++K++ F
Sbjct: 1 KRRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 57
>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
Length = 55
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEME 419
+R+ R++KNRE+A SR +K+ Y LE + L+ +N L + L ++
Sbjct: 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALK 49
>pdb|1A02|F Chain F, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 369 VERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEM 418
++RR RR +N+ +AA+SR R++ T L+AE +QL++E + L+ +A +
Sbjct: 1 MKRRIRRE-RNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANL 49
>pdb|2DGC|A Chain A, Gcn4 Basic Domain, Leucine Zipper Complexed With AtfCREB
Site Dna
Length = 63
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 378 KNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMER 420
+N E+A RSRARK +LE ++ +L +N HL+ +A +++
Sbjct: 16 RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58
>pdb|1DGC|A Chain A, The X-Ray Structure Of The Gcn4-Bzip Bound To AtfCREB SITE
Dna Shows The Complex Depends On Dna Flexibility
Length = 62
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 378 KNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMER 420
+N E+A RSRARK +LE ++ +L +N HL+ +A +++
Sbjct: 15 RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 57
>pdb|1LD4|E Chain E, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|F Chain F, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|G Chain G, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|H Chain H, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|I Chain I, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|J Chain J, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|K Chain K, Placement Of The Structural Proteins In Sindbis Virus
pdb|1LD4|L Chain L, Placement Of The Structural Proteins In Sindbis Virus
Length = 57
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 378 KNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMER 420
+N E+A RSRARK +LE ++ +L +N HL+ +A +++
Sbjct: 10 RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 52
>pdb|1YSA|C Chain C, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
pdb|1YSA|D Chain D, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
Of Uninterrupted Alpha Helices: Crystal Structure Of The
Protein-Dna Complex
Length = 58
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 378 KNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMER 420
+N E+A RSRARK +LE ++ +L +N HL+ +A +++
Sbjct: 11 RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.126 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,439,637
Number of Sequences: 62578
Number of extensions: 411115
Number of successful extensions: 790
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 31
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)