Query 043882
Match_columns 456
No_of_seqs 233 out of 766
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 09:11:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.2 3.3E-11 7.2E-16 95.2 8.7 56 369-424 3-58 (65)
2 PF00170 bZIP_1: bZIP transcri 99.2 5.8E-11 1.3E-15 93.6 9.4 61 369-429 3-63 (64)
3 KOG4343 bZIP transcription fac 99.2 4.2E-11 9E-16 126.9 8.1 74 364-437 274-347 (655)
4 KOG3584 cAMP response element 99.2 3.6E-11 7.8E-16 119.8 7.1 60 364-423 284-343 (348)
5 PF07716 bZIP_2: Basic region 99.1 7E-10 1.5E-14 85.2 8.5 52 369-421 3-54 (54)
6 KOG0709 CREB/ATF family transc 99.0 2.4E-10 5.3E-15 119.8 5.4 66 365-431 245-310 (472)
7 KOG4005 Transcription factor X 98.9 1.1E-08 2.5E-13 100.0 10.5 71 357-428 56-126 (292)
8 PF03131 bZIP_Maf: bZIP Maf tr 97.9 6.9E-07 1.5E-11 75.5 -3.0 57 365-421 24-80 (92)
9 KOG4571 Activating transcripti 97.6 0.00034 7.3E-09 70.8 9.8 61 370-430 226-289 (294)
10 KOG3119 Basic region leucine z 97.5 0.00033 7.2E-09 70.0 8.5 67 358-424 181-247 (269)
11 KOG0837 Transcriptional activa 97.5 0.00039 8.3E-09 69.5 8.4 61 371-431 206-269 (279)
12 KOG4196 bZIP transcription fac 97.0 0.0048 1E-07 56.2 8.9 62 365-426 47-115 (135)
13 KOG3863 bZIP transcription fac 96.0 0.008 1.7E-07 66.2 4.8 50 371-420 490-539 (604)
14 KOG1414 Transcriptional activa 92.4 0.0059 1.3E-07 64.1 -5.9 60 367-426 150-213 (395)
15 PHA03155 hypothetical protein; 86.3 1.1 2.4E-05 40.3 4.4 39 393-431 9-55 (115)
16 PF05266 DUF724: Protein of un 85.6 6.4 0.00014 38.0 9.5 11 446-456 180-190 (190)
17 KOG1414 Transcriptional activa 85.5 0.14 3E-06 53.9 -1.9 56 369-424 283-339 (395)
18 PRK10884 SH3 domain-containing 83.9 10 0.00022 37.1 10.2 42 383-424 116-157 (206)
19 PF05812 Herpes_BLRF2: Herpesv 83.9 1.7 3.7E-05 39.3 4.5 30 390-419 1-30 (118)
20 TIGR02894 DNA_bind_RsfA transc 83.9 6.2 0.00014 37.5 8.4 40 386-425 105-144 (161)
21 PHA03162 hypothetical protein; 83.2 0.81 1.7E-05 42.1 2.2 43 389-431 10-64 (135)
22 PRK00888 ftsB cell division pr 83.1 4 8.8E-05 35.7 6.4 33 388-420 30-62 (105)
23 KOG1318 Helix loop helix trans 81.7 5 0.00011 43.1 7.7 58 367-424 238-322 (411)
24 KOG4343 bZIP transcription fac 77.5 4.5 9.7E-05 44.9 5.8 62 363-424 277-341 (655)
25 PRK10803 tol-pal system protei 76.9 16 0.00034 36.7 9.1 40 389-428 58-97 (263)
26 PF01166 TSC22: TSC-22/dip/bun 76.2 4.3 9.4E-05 32.7 4.0 22 392-413 21-42 (59)
27 PF04977 DivIC: Septum formati 76.2 7.8 0.00017 30.8 5.6 31 388-418 20-50 (80)
28 PF13863 DUF4200: Domain of un 74.7 42 0.0009 29.2 10.2 61 370-432 59-119 (126)
29 PF13851 GAS: Growth-arrest sp 73.6 30 0.00065 33.5 9.8 57 370-426 71-127 (201)
30 PF07558 Shugoshin_N: Shugoshi 72.5 4.1 8.9E-05 30.9 2.9 44 372-416 2-45 (46)
31 PF08172 CASP_C: CASP C termin 72.3 13 0.00028 37.4 7.2 27 395-421 96-122 (248)
32 KOG0709 CREB/ATF family transc 70.7 13 0.00028 40.6 7.2 60 364-423 248-317 (472)
33 PF12709 Kinetocho_Slk19: Cent 70.7 16 0.00035 31.6 6.4 34 391-424 48-81 (87)
34 PRK13169 DNA replication intia 70.0 7.8 0.00017 34.6 4.6 30 389-418 26-55 (110)
35 TIGR02449 conserved hypothetic 69.7 19 0.00041 29.5 6.4 33 393-425 8-40 (65)
36 PF06156 DUF972: Protein of un 69.6 8.2 0.00018 34.2 4.6 30 391-420 28-57 (107)
37 PRK05759 F0F1 ATP synthase sub 69.5 64 0.0014 29.1 10.5 67 364-430 28-94 (156)
38 KOG3119 Basic region leucine z 69.1 28 0.0006 35.2 8.8 36 388-423 218-253 (269)
39 PRK09174 F0F1 ATP synthase sub 68.9 44 0.00096 32.5 9.9 50 364-413 77-126 (204)
40 PRK13454 F0F1 ATP synthase sub 68.7 47 0.001 31.4 9.8 54 364-417 55-108 (181)
41 PRK14474 F0F1 ATP synthase sub 68.6 51 0.0011 32.9 10.5 68 364-431 29-96 (250)
42 KOG4005 Transcription factor X 67.8 37 0.0008 34.6 9.2 71 355-425 57-130 (292)
43 PF03980 Nnf1: Nnf1 ; InterPr 67.6 8.6 0.00019 33.2 4.3 32 389-420 77-108 (109)
44 KOG4571 Activating transcripti 66.9 46 0.00099 34.6 9.9 64 366-429 226-292 (294)
45 PF15058 Speriolin_N: Sperioli 66.0 9.6 0.00021 37.3 4.6 29 394-422 7-35 (200)
46 PF06005 DUF904: Protein of un 65.5 21 0.00045 29.6 5.9 24 396-419 29-52 (72)
47 PRK07352 F0F1 ATP synthase sub 65.4 79 0.0017 29.4 10.5 65 364-428 43-107 (174)
48 PRK13461 F0F1 ATP synthase sub 65.3 85 0.0018 28.7 10.5 65 364-428 29-93 (159)
49 PF05529 Bap31: B-cell recepto 65.2 25 0.00054 33.1 7.2 26 394-419 163-188 (192)
50 PF11559 ADIP: Afadin- and alp 64.9 63 0.0014 29.3 9.6 54 371-424 45-98 (151)
51 CHL00118 atpG ATP synthase CF0 64.3 91 0.002 28.6 10.5 55 363-417 45-99 (156)
52 PF06785 UPF0242: Uncharacteri 63.9 14 0.0003 39.2 5.6 43 387-429 122-164 (401)
53 PF09726 Macoilin: Transmembra 63.1 42 0.0009 38.5 9.7 26 397-422 543-568 (697)
54 PRK14471 F0F1 ATP synthase sub 62.8 99 0.0021 28.4 10.5 55 363-417 31-85 (164)
55 PRK14472 F0F1 ATP synthase sub 62.6 95 0.0021 28.9 10.5 66 363-428 41-106 (175)
56 TIGR02209 ftsL_broad cell divi 62.4 30 0.00064 28.2 6.3 32 389-420 28-59 (85)
57 PF02183 HALZ: Homeobox associ 61.5 23 0.0005 26.9 5.0 27 395-421 15-41 (45)
58 PF12808 Mto2_bdg: Micro-tubul 61.2 17 0.00036 28.7 4.3 24 396-419 26-49 (52)
59 KOG2391 Vacuolar sorting prote 61.1 1.7E+02 0.0037 31.3 12.9 57 365-423 216-277 (365)
60 PF05377 FlaC_arch: Flagella a 61.1 30 0.00064 27.7 5.7 31 395-425 10-40 (55)
61 PF12999 PRKCSH-like: Glucosid 60.8 50 0.0011 31.9 8.3 37 384-420 138-174 (176)
62 PRK13453 F0F1 ATP synthase sub 60.6 1.1E+02 0.0023 28.7 10.5 65 364-428 42-106 (173)
63 CHL00019 atpF ATP synthase CF0 60.5 1.1E+02 0.0024 28.8 10.6 67 364-430 48-114 (184)
64 PRK14473 F0F1 ATP synthase sub 60.2 1.2E+02 0.0025 27.9 10.5 65 364-428 32-96 (164)
65 PF04111 APG6: Autophagy prote 60.1 91 0.002 32.2 10.8 11 442-452 126-136 (314)
66 KOG4797 Transcriptional regula 59.7 12 0.00026 33.8 3.7 25 390-414 72-96 (123)
67 PF09726 Macoilin: Transmembra 59.6 37 0.00079 39.0 8.4 32 386-421 543-574 (697)
68 KOG4196 bZIP transcription fac 59.5 27 0.00058 32.4 6.0 27 402-428 77-103 (135)
69 KOG4661 Hsp27-ERE-TATA-binding 58.9 45 0.00098 37.8 8.6 20 402-421 649-668 (940)
70 PF06156 DUF972: Protein of un 58.9 33 0.00071 30.4 6.3 33 392-424 22-54 (107)
71 PF04568 IATP: Mitochondrial A 58.7 54 0.0012 29.0 7.5 27 395-421 72-98 (100)
72 PHA00728 hypothetical protein 58.5 11 0.00023 34.8 3.3 26 399-424 5-30 (151)
73 PF14197 Cep57_CLD_2: Centroso 58.0 32 0.00069 28.3 5.7 40 372-411 27-66 (69)
74 PF07407 Seadorna_VP6: Seadorn 57.6 20 0.00044 37.9 5.5 28 396-423 36-63 (420)
75 PRK13460 F0F1 ATP synthase sub 57.5 1.3E+02 0.0028 28.0 10.5 60 364-423 40-99 (173)
76 PF08232 Striatin: Striatin fa 57.3 70 0.0015 29.2 8.4 52 375-426 15-66 (134)
77 PF06632 XRCC4: DNA double-str 57.3 24 0.00052 37.1 6.1 34 391-424 143-176 (342)
78 PF06005 DUF904: Protein of un 56.1 46 0.001 27.6 6.4 25 397-421 23-47 (72)
79 cd07429 Cby_like Chibby, a nuc 55.1 24 0.00053 31.6 4.9 24 400-423 80-103 (108)
80 KOG3335 Predicted coiled-coil 54.8 34 0.00074 33.2 6.1 32 389-420 103-134 (181)
81 PF04999 FtsL: Cell division p 54.5 54 0.0012 27.6 6.7 27 394-420 44-70 (97)
82 PF05529 Bap31: B-cell recepto 53.8 82 0.0018 29.7 8.6 21 398-418 160-180 (192)
83 PF01486 K-box: K-box region; 53.6 60 0.0013 27.7 6.9 32 385-416 64-99 (100)
84 PF08614 ATG16: Autophagy prot 53.1 1.6E+02 0.0034 28.1 10.4 53 371-423 116-168 (194)
85 PRK06231 F0F1 ATP synthase sub 52.2 1.6E+02 0.0035 28.5 10.5 63 364-426 72-134 (205)
86 PF05377 FlaC_arch: Flagella a 52.2 43 0.00093 26.8 5.3 29 394-422 2-30 (55)
87 PF05300 DUF737: Protein of un 52.0 84 0.0018 30.6 8.4 51 376-426 118-168 (187)
88 PRK13169 DNA replication intia 52.0 50 0.0011 29.6 6.4 33 392-424 22-54 (110)
89 PF00170 bZIP_1: bZIP transcri 51.7 1.2E+02 0.0025 23.8 9.3 56 367-422 5-63 (64)
90 PRK08475 F0F1 ATP synthase sub 51.6 1.5E+02 0.0033 27.7 9.9 65 364-428 46-110 (167)
91 PF02403 Seryl_tRNA_N: Seryl-t 51.1 31 0.00068 29.4 4.9 32 393-424 68-99 (108)
92 PRK14475 F0F1 ATP synthase sub 50.9 2E+02 0.0043 26.7 10.5 56 363-418 33-88 (167)
93 PRK13428 F0F1 ATP synthase sub 50.6 1.1E+02 0.0024 33.1 9.9 65 364-428 25-89 (445)
94 PF10186 Atg14: UV radiation r 49.9 1.2E+02 0.0027 29.4 9.4 30 388-417 66-95 (302)
95 KOG4807 F-actin binding protei 49.7 42 0.0009 36.5 6.4 46 387-432 388-447 (593)
96 smart00340 HALZ homeobox assoc 49.4 37 0.0008 26.0 4.3 26 395-420 8-33 (44)
97 PF11500 Cut12: Spindle pole b 49.2 1.6E+02 0.0035 28.0 9.5 54 368-421 81-134 (152)
98 KOG2829 E2F-like protein [Tran 49.2 35 0.00076 35.6 5.6 34 364-405 133-166 (326)
99 PF09304 Cortex-I_coil: Cortex 49.2 2E+02 0.0044 25.9 9.7 57 370-426 15-71 (107)
100 PF06210 DUF1003: Protein of u 49.2 96 0.0021 27.6 7.7 47 373-424 52-98 (108)
101 PF02344 Myc-LZ: Myc leucine z 48.9 40 0.00086 24.3 4.1 27 396-422 5-31 (32)
102 PLN02320 seryl-tRNA synthetase 48.9 59 0.0013 36.1 7.6 52 376-427 114-165 (502)
103 PF07047 OPA3: Optic atrophy 3 48.8 33 0.00072 31.2 4.9 37 370-412 96-132 (134)
104 PRK00888 ftsB cell division pr 48.3 45 0.00098 29.3 5.5 20 394-413 43-62 (105)
105 PRK13455 F0F1 ATP synthase sub 48.1 2.3E+02 0.0049 26.6 10.5 51 364-414 51-101 (184)
106 PRK06569 F0F1 ATP synthase sub 47.9 2.3E+02 0.005 26.9 10.4 39 364-402 34-72 (155)
107 TIGR03321 alt_F1F0_F0_B altern 47.6 2E+02 0.0043 28.4 10.5 50 364-413 29-78 (246)
108 COG2433 Uncharacterized conser 47.2 38 0.00081 38.4 5.8 11 184-194 172-182 (652)
109 PF14077 WD40_alt: Alternative 47.0 15 0.00034 28.4 2.1 22 392-413 18-39 (48)
110 PF11932 DUF3450: Protein of u 46.7 2.2E+02 0.0048 28.0 10.7 33 391-423 69-101 (251)
111 PF14645 Chibby: Chibby family 46.7 60 0.0013 29.2 6.1 32 397-428 76-107 (116)
112 PF13747 DUF4164: Domain of un 46.6 1.8E+02 0.004 24.8 8.8 55 369-423 9-63 (89)
113 PRK14127 cell division protein 46.4 54 0.0012 29.4 5.7 30 394-423 39-68 (109)
114 PRK13729 conjugal transfer pil 46.2 43 0.00094 36.9 6.0 21 395-415 100-120 (475)
115 PRK13922 rod shape-determining 45.5 1E+02 0.0023 30.5 8.2 35 386-420 63-97 (276)
116 PF10473 CENP-F_leu_zip: Leuci 45.0 1.8E+02 0.0038 27.2 9.0 56 369-424 29-84 (140)
117 PF12709 Kinetocho_Slk19: Cent 44.1 91 0.002 27.1 6.5 36 389-424 39-74 (87)
118 TIGR01144 ATP_synt_b ATP synth 43.7 2.4E+02 0.0052 25.2 10.5 51 364-414 19-69 (147)
119 PRK05431 seryl-tRNA synthetase 43.4 73 0.0016 34.2 7.2 34 393-426 67-100 (425)
120 KOG0288 WD40 repeat protein Ti 43.3 1.6E+02 0.0034 32.3 9.5 31 391-421 47-77 (459)
121 KOG4643 Uncharacterized coiled 42.9 50 0.0011 39.6 6.1 34 390-423 528-561 (1195)
122 PF07888 CALCOCO1: Calcium bin 42.7 1.9E+02 0.004 32.7 10.3 43 370-412 149-191 (546)
123 COG4467 Regulator of replicati 42.7 24 0.00052 31.8 2.9 27 391-417 28-54 (114)
124 PRK09173 F0F1 ATP synthase sub 42.3 2.7E+02 0.0059 25.4 10.4 49 364-412 26-74 (159)
125 PRK14127 cell division protein 42.2 53 0.0011 29.4 5.0 33 392-424 30-62 (109)
126 COG3074 Uncharacterized protei 42.1 76 0.0017 26.8 5.5 31 394-424 20-50 (79)
127 PF07926 TPR_MLP1_2: TPR/MLP1/ 41.3 1.5E+02 0.0033 26.5 7.9 19 401-419 100-118 (132)
128 TIGR03752 conj_TIGR03752 integ 41.2 51 0.0011 36.3 5.6 29 395-423 76-104 (472)
129 KOG2412 Nuclear-export-signal 41.1 1.5E+02 0.0034 33.4 9.2 25 369-393 212-236 (591)
130 PRK11637 AmiB activator; Provi 41.1 2.1E+02 0.0046 30.3 10.2 27 394-420 98-124 (428)
131 TIGR00414 serS seryl-tRNA synt 41.1 1.2E+02 0.0026 32.4 8.4 53 375-427 50-104 (418)
132 PF11853 DUF3373: Protein of u 41.0 25 0.00055 38.8 3.3 28 393-420 32-59 (489)
133 COG1382 GimC Prefoldin, chaper 40.7 80 0.0017 28.8 5.9 29 395-423 80-108 (119)
134 PF10224 DUF2205: Predicted co 40.5 2.3E+02 0.005 24.1 8.7 34 391-424 29-62 (80)
135 TIGR03752 conj_TIGR03752 integ 40.4 52 0.0011 36.2 5.6 23 396-418 113-135 (472)
136 PF14362 DUF4407: Domain of un 39.9 1.9E+02 0.0041 29.1 9.2 29 393-421 136-164 (301)
137 PRK13729 conjugal transfer pil 39.8 1E+02 0.0022 34.1 7.7 27 393-419 77-103 (475)
138 PF11932 DUF3450: Protein of u 39.8 2.2E+02 0.0047 28.1 9.4 40 373-412 58-97 (251)
139 KOG1029 Endocytic adaptor prot 39.8 1.3E+02 0.0028 35.5 8.6 29 33-63 43-71 (1118)
140 cd07596 BAR_SNX The Bin/Amphip 39.8 2.4E+02 0.0051 25.9 9.2 24 374-397 113-136 (218)
141 PF12325 TMF_TATA_bd: TATA ele 39.8 2.4E+02 0.0053 25.5 8.9 15 372-386 38-52 (120)
142 PF04977 DivIC: Septum formati 39.7 83 0.0018 24.8 5.4 26 396-421 21-46 (80)
143 PF08563 P53_TAD: P53 transact 39.7 20 0.00043 24.5 1.5 19 131-149 4-22 (25)
144 PRK07353 F0F1 ATP synthase sub 39.2 2.7E+02 0.0059 24.6 10.5 53 365-417 30-82 (140)
145 COG4026 Uncharacterized protei 38.7 1.4E+02 0.0031 30.4 7.8 31 394-424 144-174 (290)
146 PRK08476 F0F1 ATP synthase sub 38.6 3E+02 0.0066 24.9 10.5 47 363-409 30-76 (141)
147 COG0711 AtpF F0F1-type ATP syn 38.5 3.3E+02 0.0072 25.3 10.5 46 364-409 30-75 (161)
148 PRK06568 F0F1 ATP synthase sub 38.5 3.4E+02 0.0075 25.5 10.5 62 363-424 27-88 (154)
149 PRK13923 putative spore coat p 38.1 82 0.0018 30.3 5.9 36 391-426 110-145 (170)
150 PF10481 CENP-F_N: Cenp-F N-te 38.1 1.8E+02 0.0039 30.3 8.6 56 369-424 16-85 (307)
151 smart00243 GAS2 Growth-Arrest- 38.0 15 0.00032 30.9 0.8 12 181-192 55-66 (73)
152 PRK10884 SH3 domain-containing 37.8 3.4E+02 0.0073 26.7 10.2 30 392-421 132-161 (206)
153 PF09457 RBD-FIP: FIP domain ; 37.1 1.6E+02 0.0035 22.8 6.3 38 395-432 3-40 (48)
154 PRK09413 IS2 repressor TnpA; R 36.8 60 0.0013 28.5 4.5 23 394-416 80-102 (121)
155 PF12325 TMF_TATA_bd: TATA ele 36.5 3.1E+02 0.0066 24.9 9.0 10 412-421 74-83 (120)
156 PF07047 OPA3: Optic atrophy 3 36.4 65 0.0014 29.3 4.8 28 392-419 105-132 (134)
157 PRK06835 DNA replication prote 36.1 1.9E+02 0.0041 30.1 8.6 38 391-428 35-87 (329)
158 PF08781 DP: Transcription fac 36.0 1.6E+02 0.0034 27.7 7.3 18 387-404 17-34 (142)
159 PF05103 DivIVA: DivIVA protei 35.9 38 0.00082 29.5 3.1 24 392-415 46-69 (131)
160 PLN02678 seryl-tRNA synthetase 35.9 1.4E+02 0.0031 32.6 8.0 38 390-427 69-106 (448)
161 PF15290 Syntaphilin: Golgi-lo 35.9 80 0.0017 32.9 5.7 10 425-434 131-140 (305)
162 PF06698 DUF1192: Protein of u 35.7 92 0.002 25.1 5.0 25 394-418 23-47 (59)
163 COG4026 Uncharacterized protei 35.5 1.1E+02 0.0023 31.2 6.4 30 393-422 136-165 (290)
164 TIGR00219 mreC rod shape-deter 34.7 99 0.0021 31.5 6.3 13 399-411 73-85 (283)
165 PF06311 NumbF: NUMB domain; 34.6 14 0.00031 32.0 0.2 18 124-141 14-31 (88)
166 KOG3436 60S ribosomal protein 34.2 1.7E+02 0.0037 26.9 6.9 20 395-414 15-34 (123)
167 PF14662 CCDC155: Coiled-coil 34.2 1.9E+02 0.0042 28.5 7.8 35 395-429 98-132 (193)
168 TIGR02338 gimC_beta prefoldin, 34.1 1.2E+02 0.0026 26.3 5.9 30 395-424 77-106 (110)
169 PF14257 DUF4349: Domain of un 33.8 1.6E+02 0.0034 29.1 7.4 42 380-421 150-191 (262)
170 COG3074 Uncharacterized protei 33.5 1.5E+02 0.0033 25.0 6.0 31 391-421 24-54 (79)
171 PHA02562 46 endonuclease subun 33.1 2.4E+02 0.0052 30.4 9.2 24 41-66 44-67 (562)
172 PF15030 DUF4527: Protein of u 33.0 1.7E+02 0.0036 30.1 7.3 42 383-424 49-90 (277)
173 COG1382 GimC Prefoldin, chaper 33.0 1.3E+02 0.0028 27.5 6.1 37 388-424 66-102 (119)
174 PF01920 Prefoldin_2: Prefoldi 32.9 1.5E+02 0.0033 24.5 6.2 27 395-421 65-91 (106)
175 PF13805 Pil1: Eisosome compon 32.9 1.5E+02 0.0032 30.6 7.1 28 394-421 167-194 (271)
176 PF10224 DUF2205: Predicted co 32.7 2.4E+02 0.0052 24.1 7.2 31 390-420 35-65 (80)
177 PRK15422 septal ring assembly 32.5 1.4E+02 0.0031 25.5 5.8 24 395-418 21-44 (79)
178 PF05278 PEARLI-4: Arabidopsis 32.3 4.7E+02 0.01 27.1 10.5 38 391-428 206-243 (269)
179 PRK11239 hypothetical protein; 32.1 72 0.0016 31.9 4.6 26 395-420 186-211 (215)
180 PF00038 Filament: Intermediat 31.9 4.2E+02 0.009 26.5 10.1 36 389-424 220-255 (312)
181 KOG2891 Surface glycoprotein [ 31.9 3.3E+02 0.0071 28.8 9.4 10 183-192 172-181 (445)
182 COG1579 Zn-ribbon protein, pos 31.7 2.5E+02 0.0053 28.5 8.3 34 388-421 48-81 (239)
183 PRK13922 rod shape-determining 31.6 1.3E+02 0.0028 29.8 6.4 19 403-421 73-91 (276)
184 COG3883 Uncharacterized protei 31.6 3.6E+02 0.0079 27.8 9.6 44 374-417 55-98 (265)
185 PF11382 DUF3186: Protein of u 31.5 76 0.0017 32.6 4.9 31 393-423 33-63 (308)
186 PF09602 PhaP_Bmeg: Polyhydrox 31.2 4.2E+02 0.0092 25.6 9.4 53 375-428 62-114 (165)
187 KOG1103 Predicted coiled-coil 31.0 2E+02 0.0043 31.1 7.9 15 368-382 111-125 (561)
188 PF07407 Seadorna_VP6: Seadorn 31.0 75 0.0016 33.9 4.7 17 390-406 44-60 (420)
189 KOG2483 Upstream transcription 31.0 1.1E+02 0.0025 30.7 5.9 36 388-423 101-136 (232)
190 PF06305 DUF1049: Protein of u 30.8 65 0.0014 25.1 3.4 11 393-403 56-66 (68)
191 PF15294 Leu_zip: Leucine zipp 30.5 97 0.0021 32.0 5.4 30 391-420 145-174 (278)
192 COG4942 Membrane-bound metallo 30.5 3.2E+02 0.007 29.9 9.5 31 388-418 55-85 (420)
193 PF10883 DUF2681: Protein of u 30.4 1.3E+02 0.0028 26.0 5.4 22 401-422 32-53 (87)
194 KOG0163 Myosin class VI heavy 30.2 2.1E+02 0.0045 34.0 8.3 20 372-391 922-941 (1259)
195 PF07334 IFP_35_N: Interferon- 30.1 86 0.0019 26.6 4.1 19 403-421 4-22 (76)
196 PF04340 DUF484: Protein of un 29.6 90 0.002 30.2 4.8 14 406-419 71-84 (225)
197 PHA02109 hypothetical protein 29.4 1.5E+02 0.0032 29.2 6.1 40 389-428 190-229 (233)
198 cd08531 SAM_PNT-ERG_FLI-1 Ster 29.3 29 0.00064 28.9 1.2 19 179-197 41-59 (75)
199 KOG3654 Uncharacterized CH dom 29.2 3.8E+02 0.0082 30.4 9.8 36 366-401 387-422 (708)
200 PF09325 Vps5: Vps5 C terminal 29.2 3.8E+02 0.0082 25.4 8.9 49 374-422 131-186 (236)
201 PF04849 HAP1_N: HAP1 N-termin 29.1 1.2E+02 0.0027 31.7 5.9 25 394-418 162-186 (306)
202 PF15219 TEX12: Testis-express 29.0 73 0.0016 28.1 3.6 12 442-453 81-92 (100)
203 KOG1055 GABA-B ion channel rec 28.9 20 0.00042 41.7 0.2 53 370-422 725-782 (865)
204 PF04102 SlyX: SlyX; InterPro 28.8 2.1E+02 0.0045 23.2 6.0 23 392-414 4-26 (69)
205 KOG3433 Protein involved in me 28.8 3.2E+02 0.0068 27.1 8.2 57 371-428 95-151 (203)
206 PF10669 Phage_Gp23: Protein g 28.6 3.1E+02 0.0066 24.7 7.4 42 368-413 52-93 (121)
207 PF15070 GOLGA2L5: Putative go 28.5 4E+02 0.0088 30.4 10.2 55 375-429 105-183 (617)
208 PF11460 DUF3007: Protein of u 28.5 1.1E+02 0.0024 27.3 4.8 21 410-430 82-102 (104)
209 PF10211 Ax_dynein_light: Axon 28.4 2.4E+02 0.0052 27.1 7.4 35 389-423 124-158 (189)
210 PRK09343 prefoldin subunit bet 28.1 1.7E+02 0.0038 26.1 6.0 30 395-424 81-110 (121)
211 PF10205 KLRAQ: Predicted coil 27.6 4.5E+02 0.0097 23.5 9.1 41 383-423 30-71 (102)
212 PF10211 Ax_dynein_light: Axon 27.5 4.3E+02 0.0093 25.4 8.9 32 394-425 122-153 (189)
213 PF10226 DUF2216: Uncharacteri 27.4 4.3E+02 0.0093 26.2 8.9 54 369-422 21-78 (195)
214 cd08757 SAM_PNT_ESE Sterile al 27.4 33 0.00072 27.9 1.2 18 178-195 38-55 (68)
215 PRK02292 V-type ATP synthase s 27.2 4.4E+02 0.0095 24.6 8.8 37 396-432 74-110 (188)
216 PF03670 UPF0184: Uncharacteri 27.0 2E+02 0.0044 24.8 5.9 38 392-429 33-70 (83)
217 PRK15422 septal ring assembly 26.9 2.4E+02 0.0051 24.2 6.2 10 394-403 6-15 (79)
218 COG3879 Uncharacterized protei 26.7 3E+02 0.0064 28.2 7.9 25 381-405 60-84 (247)
219 KOG1962 B-cell receptor-associ 26.5 2.2E+02 0.0048 28.5 6.9 37 392-428 165-201 (216)
220 PRK00247 putative inner membra 26.3 5.3E+02 0.011 28.3 10.3 14 368-381 287-300 (429)
221 PF09744 Jnk-SapK_ap_N: JNK_SA 26.3 5.1E+02 0.011 24.5 9.0 36 386-424 72-107 (158)
222 TIGR01069 mutS2 MutS2 family p 26.2 4.9E+02 0.011 30.4 10.6 32 374-405 525-556 (771)
223 COG1792 MreC Cell shape-determ 26.2 1.6E+02 0.0035 30.1 6.1 26 392-417 83-108 (284)
224 KOG0561 bHLH transcription fac 26.1 52 0.0011 34.6 2.6 32 388-419 101-132 (373)
225 cd00632 Prefoldin_beta Prefold 26.1 2E+02 0.0044 24.6 5.9 27 395-421 73-99 (105)
226 cd08533 SAM_PNT-ETS-1,2 Steril 26.0 37 0.00079 28.1 1.2 17 179-195 39-55 (71)
227 PF07106 TBPIP: Tat binding pr 25.8 1.1E+02 0.0024 28.3 4.5 32 390-421 107-138 (169)
228 cd08540 SAM_PNT-ERG Sterile al 25.8 37 0.0008 28.4 1.2 20 179-198 41-60 (75)
229 COG2433 Uncharacterized conser 25.8 3.7E+02 0.0081 30.9 9.2 30 392-421 436-465 (652)
230 KOG4797 Transcriptional regula 25.7 1.6E+02 0.0036 26.8 5.3 37 392-428 67-103 (123)
231 TIGR01069 mutS2 MutS2 family p 25.6 4.6E+02 0.01 30.6 10.3 9 403-411 547-555 (771)
232 cd07596 BAR_SNX The Bin/Amphip 25.4 2.6E+02 0.0057 25.6 6.9 32 392-423 145-176 (218)
233 TIGR00219 mreC rod shape-deter 25.3 1.7E+02 0.0038 29.7 6.2 10 404-413 96-105 (283)
234 smart00338 BRLZ basic region l 25.3 3.3E+02 0.0072 21.2 8.9 29 393-421 34-62 (65)
235 PRK04325 hypothetical protein; 25.2 2.2E+02 0.0048 23.6 5.7 20 393-412 10-29 (74)
236 cd08203 SAM_PNT Sterile alpha 25.1 38 0.00083 27.2 1.2 17 178-194 36-52 (66)
237 PF01166 TSC22: TSC-22/dip/bun 24.9 1.2E+02 0.0025 24.8 3.8 20 401-420 16-35 (59)
238 TIGR01834 PHA_synth_III_E poly 24.8 1E+02 0.0022 32.4 4.5 19 405-423 288-306 (320)
239 TIGR00993 3a0901s04IAP86 chlor 24.7 1.5E+02 0.0032 34.6 6.0 40 380-421 419-458 (763)
240 cd07666 BAR_SNX7 The Bin/Amphi 24.7 3.9E+02 0.0085 27.0 8.4 14 408-421 197-210 (243)
241 KOG4403 Cell surface glycoprot 24.7 2.7E+02 0.0059 30.9 7.7 14 64-77 6-19 (575)
242 PF10168 Nup88: Nuclear pore c 24.5 5.3E+02 0.012 30.0 10.4 32 392-423 579-610 (717)
243 PF09766 FimP: Fms-interacting 24.5 2E+02 0.0044 30.2 6.6 38 386-423 102-139 (355)
244 PF04111 APG6: Autophagy prote 24.4 5.9E+02 0.013 26.4 9.9 24 394-417 66-89 (314)
245 PRK04863 mukB cell division pr 24.4 3.5E+02 0.0076 34.1 9.5 61 364-424 985-1045(1486)
246 PF12718 Tropomyosin_1: Tropom 24.4 2.2E+02 0.0048 26.2 6.2 32 390-421 33-64 (143)
247 PRK09039 hypothetical protein; 24.3 4.3E+02 0.0094 27.7 9.0 19 404-422 163-181 (343)
248 PF14775 NYD-SP28_assoc: Sperm 24.2 1.1E+02 0.0024 24.5 3.6 20 397-416 38-57 (60)
249 KOG0977 Nuclear envelope prote 24.1 4.8E+02 0.01 29.6 9.6 66 365-430 125-200 (546)
250 TIGR02894 DNA_bind_RsfA transc 24.1 2E+02 0.0043 27.7 5.8 22 400-421 105-126 (161)
251 PF07334 IFP_35_N: Interferon- 24.1 1.6E+02 0.0034 25.0 4.6 28 394-421 2-29 (76)
252 cd05030 calgranulins Calgranul 23.7 37 0.0008 28.2 0.9 11 181-191 66-76 (88)
253 KOG0250 DNA repair protein RAD 23.6 4.2E+02 0.0091 32.3 9.5 83 367-451 368-451 (1074)
254 PRK14877 conjugal transfer mat 23.5 47 0.001 38.9 1.9 32 36-73 946-977 (1062)
255 PF11221 Med21: Subunit 21 of 23.5 2.3E+02 0.0051 25.9 6.1 36 395-431 100-135 (144)
256 PHA02562 46 endonuclease subun 23.3 4.8E+02 0.01 28.1 9.4 30 395-424 361-390 (562)
257 PF11559 ADIP: Afadin- and alp 23.2 5.6E+02 0.012 23.1 9.5 55 369-423 57-111 (151)
258 PF06810 Phage_GP20: Phage min 23.2 3.7E+02 0.0081 25.1 7.5 15 407-421 52-66 (155)
259 PTZ00266 NIMA-related protein 23.1 5.1E+02 0.011 31.5 10.2 6 142-147 223-228 (1021)
260 PRK00295 hypothetical protein; 23.1 2.6E+02 0.0057 22.7 5.7 19 393-411 6-24 (68)
261 TIGR02750 TraN_Ftype type-F co 23.1 50 0.0011 37.2 2.0 26 37-68 528-553 (572)
262 COG2919 Septum formation initi 23.1 1.6E+02 0.0036 26.1 4.9 26 396-421 61-86 (117)
263 PF04012 PspA_IM30: PspA/IM30 23.0 5.6E+02 0.012 24.4 8.9 22 402-423 115-136 (221)
264 PF09340 NuA4: Histone acetylt 22.9 2E+02 0.0042 24.2 5.0 33 392-424 2-34 (80)
265 PRK00736 hypothetical protein; 22.8 2.7E+02 0.0058 22.7 5.7 20 392-411 5-24 (68)
266 PF09727 CortBP2: Cortactin-bi 22.8 5.4E+02 0.012 25.3 8.7 15 370-384 108-122 (192)
267 PF13815 Dzip-like_N: Iguana/D 22.7 3.8E+02 0.0083 23.6 7.1 18 397-414 85-102 (118)
268 PRK02793 phi X174 lysis protei 22.7 2.7E+02 0.0058 22.9 5.7 20 392-411 8-27 (72)
269 PF13815 Dzip-like_N: Iguana/D 22.6 3E+02 0.0065 24.3 6.4 24 399-422 80-103 (118)
270 PF04156 IncA: IncA protein; 22.5 5.9E+02 0.013 23.6 8.8 56 365-424 135-190 (191)
271 PF08826 DMPK_coil: DMPK coile 22.4 4.3E+02 0.0092 21.5 8.3 16 404-419 23-38 (61)
272 PF13863 DUF4200: Domain of un 22.4 5.1E+02 0.011 22.4 9.0 33 392-424 74-106 (126)
273 PF04599 Pox_G5: Poxvirus G5 p 22.2 2.9E+02 0.0063 30.3 7.3 41 380-420 87-127 (425)
274 COG5509 Uncharacterized small 22.0 1.5E+02 0.0032 24.4 3.9 24 394-417 27-50 (65)
275 PF07989 Microtub_assoc: Micro 21.9 1.8E+02 0.0039 24.3 4.5 28 396-423 4-31 (75)
276 TIGR02977 phageshock_pspA phag 21.8 5.8E+02 0.012 24.8 8.8 53 370-422 73-129 (219)
277 PTZ00454 26S protease regulato 21.7 3.2E+02 0.007 29.1 7.6 29 393-421 30-58 (398)
278 PRK09413 IS2 repressor TnpA; R 21.7 1.9E+02 0.0042 25.4 5.0 23 396-418 75-97 (121)
279 PF07106 TBPIP: Tat binding pr 21.6 3.1E+02 0.0067 25.3 6.6 14 410-423 113-126 (169)
280 PF08317 Spc7: Spc7 kinetochor 21.5 4.6E+02 0.0099 27.0 8.4 20 177-196 8-27 (325)
281 COG3132 Uncharacterized protei 21.4 1.2E+02 0.0025 30.0 3.8 24 396-419 189-212 (215)
282 PRK12355 conjugal transfer mat 21.4 57 0.0012 36.6 2.0 28 37-70 514-541 (558)
283 PF05700 BCAS2: Breast carcino 21.3 2.6E+02 0.0057 27.3 6.4 31 393-423 137-167 (221)
284 PRK10698 phage shock protein P 21.2 6.3E+02 0.014 24.8 9.0 57 367-423 70-137 (222)
285 KOG1656 Protein involved in gl 21.2 3.8E+02 0.0082 26.9 7.3 25 373-397 53-77 (221)
286 PF12001 DUF3496: Domain of un 21.2 2.3E+02 0.005 25.6 5.4 29 384-412 29-60 (111)
287 PF07742 BTG: BTG family; Int 21.2 3.1E+02 0.0066 24.7 6.2 40 412-451 24-63 (118)
288 PF10845 DUF2576: Protein of u 21.1 1.3E+02 0.0028 23.4 3.2 20 402-421 14-33 (48)
289 PF05266 DUF724: Protein of un 21.1 7.7E+02 0.017 23.9 9.8 23 380-402 98-120 (190)
290 PF14989 CCDC32: Coiled-coil d 21.0 1.4E+02 0.003 28.2 4.2 17 392-408 56-72 (148)
291 PF01763 Herpes_UL6: Herpesvir 21.0 2E+02 0.0044 32.5 6.0 37 392-428 370-406 (557)
292 PF10168 Nup88: Nuclear pore c 21.0 6E+02 0.013 29.6 9.9 27 396-422 590-616 (717)
293 TIGR02976 phageshock_pspB phag 21.0 96 0.0021 26.1 2.8 24 397-420 40-63 (75)
294 COG4467 Regulator of replicati 21.0 3.1E+02 0.0066 25.0 6.0 30 394-423 10-39 (114)
295 PRK00247 putative inner membra 20.8 8E+02 0.017 27.0 10.3 14 388-401 331-344 (429)
296 COG2919 Septum formation initi 20.8 3.2E+02 0.007 24.2 6.3 53 370-422 20-80 (117)
297 PF09325 Vps5: Vps5 C terminal 20.8 4.5E+02 0.0097 24.8 7.7 34 391-424 162-195 (236)
298 COG5562 Phage envelope protein 20.7 50 0.0011 30.8 1.1 18 181-198 87-107 (137)
299 KOG0982 Centrosomal protein Nu 20.5 5.6E+02 0.012 28.5 8.9 31 393-423 298-328 (502)
300 cd08532 SAM_PNT-PDEF-like Ster 20.5 52 0.0011 27.5 1.1 53 131-194 4-59 (76)
301 cd04779 HTH_MerR-like_sg4 Heli 20.4 4.7E+02 0.01 23.8 7.4 36 394-429 83-118 (134)
302 cd04405 RhoGAP_BRCC3-like RhoG 20.4 43 0.00093 33.8 0.7 14 137-150 1-14 (235)
303 COG0172 SerS Seryl-tRNA synthe 20.3 3.2E+02 0.007 29.9 7.3 34 393-426 69-102 (429)
304 PRK10093 primosomal replicatio 20.3 5E+02 0.011 25.2 7.7 17 369-385 114-130 (171)
305 KOG1029 Endocytic adaptor prot 20.3 6.2E+02 0.014 30.3 9.7 7 63-69 50-56 (1118)
306 PF07716 bZIP_2: Basic region 20.2 4E+02 0.0086 20.3 8.1 23 391-413 31-53 (54)
307 PF03986 Autophagy_N: Autophag 20.2 53 0.0011 30.7 1.2 14 179-193 24-37 (145)
308 PF08172 CASP_C: CASP C termin 20.1 5.4E+02 0.012 26.0 8.4 51 370-421 86-136 (248)
309 COG4372 Uncharacterized protei 20.0 7.3E+02 0.016 27.4 9.6 48 377-424 129-176 (499)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.25 E-value=3.3e-11 Score=95.16 Aligned_cols=56 Identities=43% Similarity=0.611 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 369 VERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 369 ~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
++|+.+|+++||+||++||.||++|+.+||.++..|+.+|..|+.++..|..++..
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999888664
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.23 E-value=5.8e-11 Score=93.63 Aligned_cols=61 Identities=38% Similarity=0.593 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 369 VERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEE 429 (456)
Q Consensus 369 ~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~ 429 (456)
..++.+|+++||+||++||.||++|+++||.+|..|+.+|..|+.++..|..++..+..++
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5689999999999999999999999999999999999999999999999999988765553
No 3
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.18 E-value=4.2e-11 Score=126.93 Aligned_cols=74 Identities=39% Similarity=0.503 Sum_probs=65.1
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKMKPYTK 437 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~~~~~~~~ 437 (456)
.+|.++.||+.|||||||||..||+|||||++.||.++..|..||+.||++...|+++....+.|+-.-+.+.+
T Consensus 274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp 347 (655)
T KOG4343|consen 274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSP 347 (655)
T ss_pred ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCC
Confidence 35677899999999999999999999999999999999999999999999999999988888888765554444
No 4
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.18 E-value=3.6e-11 Score=119.83 Aligned_cols=60 Identities=28% Similarity=0.428 Sum_probs=54.6
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
..|+...||+-|+.||||+||+||+|||||+.+||.+|..||..|+.|.++|..|++-|-
T Consensus 284 ~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc 343 (348)
T KOG3584|consen 284 GAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC 343 (348)
T ss_pred cchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence 356667899999999999999999999999999999999999999999999998876653
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.07 E-value=7e-10 Score=85.19 Aligned_cols=52 Identities=50% Similarity=0.753 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 369 VERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 369 ~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
++++.||. +||++|++||.|||+|+.+|+.++..|+.+|..|+.++..|..+
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56788888 99999999999999999999999999999999999999988753
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.02 E-value=2.4e-10 Score=119.79 Aligned_cols=66 Identities=32% Similarity=0.531 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043882 365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELK 431 (456)
Q Consensus 365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~~ 431 (456)
.|+++.||.||+|||++||+.||+|||+|++.||.+|.....||.+|++++++|+..-. -+++.|+
T Consensus 245 aEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~-sLl~qL~ 310 (472)
T KOG0709|consen 245 AEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNR-SLLAQLK 310 (472)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccH-HHHHHHH
Confidence 37778999999999999999999999999999999999999999999999999987643 3444444
No 7
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=98.87 E-value=1.1e-08 Score=100.02 Aligned_cols=71 Identities=31% Similarity=0.348 Sum_probs=58.9
Q ss_pred CCCCCCCchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 357 KKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 357 rk~~~~~~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
|||..-+++ ..+||-+||++|||+.|+-+|.|||++++++|.++..|.+||..|+.+.+.|.+.-+.++.+
T Consensus 56 rKr~RL~HL-S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~ 126 (292)
T KOG4005|consen 56 RKRRRLDHL-SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAK 126 (292)
T ss_pred HHHHhhccc-CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555444555 35789999999999999999999999999999999999999999988888887766655443
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.92 E-value=6.9e-07 Score=75.55 Aligned_cols=57 Identities=35% Similarity=0.477 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
.+....|..||.+|||.+|++||.||.+++++||.++..|+.+...|..++..+..+
T Consensus 24 ~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e 80 (92)
T PF03131_consen 24 EQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQE 80 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566999999999999999999999999999999988776666666555555443
No 9
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.60 E-value=0.00034 Score=70.79 Aligned_cols=61 Identities=31% Similarity=0.440 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 043882 370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK---QQYFEEL 430 (456)
Q Consensus 370 eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~---q~~~e~~ 430 (456)
++.+|..+.|..+|.|=|.||++..+.|+.+...|+.+|.+||.++.+|+++.. +.++|..
T Consensus 226 ~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 226 KKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456666799999999999999999999999999999999999998764 5555543
No 10
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.52 E-value=0.00033 Score=69.99 Aligned_cols=67 Identities=22% Similarity=0.389 Sum_probs=58.5
Q ss_pred CCCCCCchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 358 KRIIDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 358 k~~~~~~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
++....+.|+++.+-..|..||=++|+|||.+.|...++...+|..|+.||+.|+.++++|+.+...
T Consensus 181 ~~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~ 247 (269)
T KOG3119|consen 181 KSKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELAT 247 (269)
T ss_pred hccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3544567777778888888899999999999999999999999999999999999999999887554
No 11
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.49 E-value=0.00039 Score=69.49 Aligned_cols=61 Identities=30% Similarity=0.469 Sum_probs=48.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Q 043882 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMER---KKKQQYFEELK 431 (456)
Q Consensus 371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~---~~~q~~~e~~~ 431 (456)
|-+|..++|||.|.+||+||-++|..||++|..|+-+|..|-..+..|.+ +.++.++|-+.
T Consensus 206 kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ 269 (279)
T KOG0837|consen 206 KLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIH 269 (279)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455689999999999999999999999999999999888777666554 34555666554
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.96 E-value=0.0048 Score=56.21 Aligned_cols=62 Identities=34% Similarity=0.420 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAEL-------NQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v-------~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
.|..-.|.+||-+|||=-|+-||.|+-..-++||.+. ++|++||..++.++..++.+|+.+.
T Consensus 47 eEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 47 EEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688899999999999999999999999988764 4566666666666666666666543
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=95.96 E-value=0.008 Score=66.20 Aligned_cols=50 Identities=32% Similarity=0.443 Sum_probs=41.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
|-.||.=|||.+|++||+||-.-|..||.+|..|+.|-+.|.++-.++..
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~ 539 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDS 539 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999888887777666554443
No 14
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=92.44 E-value=0.0059 Score=64.07 Aligned_cols=60 Identities=23% Similarity=0.292 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 043882 367 KVVERRQRRMIKNRESAAR---SRARKQAYTVELEAELNQLK-EENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 367 k~~eKRqrR~ikNReSA~R---SR~RKk~y~eeLE~~v~~L~-~eN~~L~~ql~~l~~~~~q~~ 426 (456)
+.++|+..|+++|+..|.+ ||.||+.++.+|+.+|+.|+ .+|..|..++..|..+++..+
T Consensus 150 ~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~ 213 (395)
T KOG1414|consen 150 EPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLE 213 (395)
T ss_pred cchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHH
Confidence 3468999999999999999 99999999999999999999 999999999999999866533
No 15
>PHA03155 hypothetical protein; Provisional
Probab=86.28 E-value=1.1 Score=40.32 Aligned_cols=39 Identities=36% Similarity=0.428 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHh
Q 043882 393 YTVELEAELNQLKEENAHLKQALAE--------MERKKKQQYFEELK 431 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~--------l~~~~~q~~~e~~~ 431 (456)
-+|+|++++.+|+.||..|++++.. |....++.++-...
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v 55 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLV 55 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHH
Confidence 4789999999999999999999966 77777777666544
No 16
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.57 E-value=6.4 Score=38.00 Aligned_cols=11 Identities=9% Similarity=0.096 Sum_probs=9.0
Q ss_pred cccccccCCCC
Q 043882 446 RIMRRNLSCPL 456 (456)
Q Consensus 446 ~~LRRT~S~pw 456 (456)
....-+.++||
T Consensus 180 ~~F~~~~aaPW 190 (190)
T PF05266_consen 180 LEFQSVAAAPW 190 (190)
T ss_pred HHHHHHhcCCC
Confidence 45688999999
No 17
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=85.52 E-value=0.14 Score=53.93 Aligned_cols=56 Identities=32% Similarity=0.510 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 043882 369 VERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLK-QALAEMERKKKQ 424 (456)
Q Consensus 369 ~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~-~ql~~l~~~~~q 424 (456)
++++.|=+++||.+|-+||.|||..+..|+.+...+..+|..|. .+++.|..+.++
T Consensus 283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~ 339 (395)
T KOG1414|consen 283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQ 339 (395)
T ss_pred hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhh
Confidence 45668889999999999999999999999999999999999998 555555555444
No 18
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.95 E-value=10 Score=37.08 Aligned_cols=42 Identities=29% Similarity=0.313 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 383 AARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 383 A~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
........++.+..++..+..|+++|.+|+++++.++.+...
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444445556666777888888888888887777654
No 19
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=83.87 E-value=1.7 Score=39.34 Aligned_cols=30 Identities=40% Similarity=0.430 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 390 KQAYTVELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 390 Kk~y~eeLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
|..-+|+|++++.+|+.||..|++++..--
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 445689999999999999999999987533
No 20
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=83.86 E-value=6.2 Score=37.52 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 386 SRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQ 425 (456)
Q Consensus 386 SR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~ 425 (456)
-..+.+..+.+|..+++.|+.||..|.+++..+++.|+.+
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788899999999999999999999999998864
No 21
>PHA03162 hypothetical protein; Provisional
Probab=83.17 E-value=0.81 Score=42.12 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHh
Q 043882 389 RKQAYTVELEAELNQLKEENAHLKQALAE------------MERKKKQQYFEELK 431 (456)
Q Consensus 389 RKk~y~eeLE~~v~~L~~eN~~L~~ql~~------------l~~~~~q~~~e~~~ 431 (456)
+|+.-+|+|++++.+|+.||..|++++.. |....++.++-...
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v 64 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAAT 64 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHH
Confidence 35667899999999999999999999932 55666666655443
No 22
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=83.06 E-value=4 Score=35.75 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 388 ARKQAYTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 388 ~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
.+.++.+++++.++..|+.+|..|+++++.|+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 446667788999999999999999999998876
No 23
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=81.73 E-value=5 Score=43.14 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHhhHH-----------------------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 367 KVVERRQRRMIKNRES-----------------------AA----RSRARKQAYTVELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 367 k~~eKRqrR~ikNReS-----------------------A~----RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
..+|||+|-.|.+|.- |. |+=+++.+.+.|++.+-+.|+..|.+|+.++++|+
T Consensus 238 NeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~rieeLk 317 (411)
T KOG1318|consen 238 NEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALRIEELK 317 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 3478899988888852 22 12233445566777777888999999999999998
Q ss_pred HHHHH
Q 043882 420 RKKKQ 424 (456)
Q Consensus 420 ~~~~q 424 (456)
.++..
T Consensus 318 ~~~~~ 322 (411)
T KOG1318|consen 318 SEAGR 322 (411)
T ss_pred HHHHH
Confidence 87654
No 24
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=77.48 E-value=4.5 Score=44.89 Aligned_cols=62 Identities=27% Similarity=0.243 Sum_probs=43.1
Q ss_pred CchhhHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 363 GPVEKVVERRQRRMIKNRESAARSRA---RKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 363 ~~~ek~~eKRqrR~ikNReSA~RSR~---RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
..+-++..|.+|-.+.--.|-++-+. -=++.+.+|+.+.++|+.||..||++|..|..+-+.
T Consensus 277 ~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~ 341 (655)
T KOG4343|consen 277 IKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQR 341 (655)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcc
Confidence 33444455555544444444433332 346778899999999999999999999999987554
No 25
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=76.89 E-value=16 Score=36.70 Aligned_cols=40 Identities=15% Similarity=0.294 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 389 RKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 389 RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
-=+..++.|+.+|..|+-.++++..++++++++.++.+.+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788999999999999999999999999998887644
No 26
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=76.20 E-value=4.3 Score=32.72 Aligned_cols=22 Identities=50% Similarity=0.514 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQ 413 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ 413 (456)
+.+.+|+.++.+|+.||..||.
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777777777777777754
No 27
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=76.18 E-value=7.8 Score=30.77 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 388 ARKQAYTVELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 388 ~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l 418 (456)
.+.+..+.+|+.+++.|+.+|..|+.+++.|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667899999999999999999999988
No 28
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=74.65 E-value=42 Score=29.19 Aligned_cols=61 Identities=28% Similarity=0.444 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043882 370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKM 432 (456)
Q Consensus 370 eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~~~ 432 (456)
+.+..|-++.-+.+.+.+..|.+.+..|..++..|+.+...|..++..+... +.+|+.+.+
T Consensus 59 ~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y--~~fL~~v~~ 119 (126)
T PF13863_consen 59 EAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKY--EEFLEKVVP 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcc
Confidence 3444455555556666666677777777777777777777777777766543 446666654
No 29
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=73.58 E-value=30 Score=33.53 Aligned_cols=57 Identities=32% Similarity=0.409 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 370 eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
-...++.+++-++-+.+-..-+..+..++.++..|+-+++.|..++..+++++++.+
T Consensus 71 ~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 71 VEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888888889999999999999999999999999887654
No 30
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=72.54 E-value=4.1 Score=30.92 Aligned_cols=44 Identities=32% Similarity=0.408 Sum_probs=13.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 372 RQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALA 416 (456)
Q Consensus 372 RqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~ 416 (456)
|+++...||+=|+..-... ..+.+||.++..|..||..|+.++.
T Consensus 2 k~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 2 KEKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 3556677777776655544 3578999999999999999987653
No 31
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=72.26 E-value=13 Score=37.39 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
.|||+++..++.+...|+.+++.|+..
T Consensus 96 ~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 96 AELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555554
No 32
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=70.73 E-value=13 Score=40.62 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=47.9
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAY----------TVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y----------~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
.+-|++.||.|-|++--||-++....=+.. =.+|..+|++|+..|..|..+|..|+....
T Consensus 248 riLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 248 RILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 355778999999999999998887654432 258999999999999999999988765543
No 33
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=70.69 E-value=16 Score=31.57 Aligned_cols=34 Identities=35% Similarity=0.422 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
...+.+|+.++..|..||..|+.++.....+.++
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777777777777777777776666443
No 34
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=70.02 E-value=7.8 Score=34.64 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 389 RKQAYTVELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 389 RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l 418 (456)
.=|+++.+|.++...|+.||..|++++.++
T Consensus 26 ~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 26 ALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777777777777777777765
No 35
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=69.72 E-value=19 Score=29.53 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKKKQQ 425 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~ 425 (456)
.++.|-....+|+.||..|+.++..+..+..+.
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L 40 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQL 40 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666778899999999999888886653
No 36
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=69.60 E-value=8.2 Score=34.18 Aligned_cols=30 Identities=37% Similarity=0.489 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
|.++.+|.++...|+.||..|++++.++.+
T Consensus 28 K~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 28 KKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555566666666655555544
No 37
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=69.45 E-value=64 Score=29.07 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=49.4
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEEL 430 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~ 430 (456)
|+.+..++|+.++.++-+.|...+..-++.+.+.+.++...+.+-.+++.....--+..++.+++..
T Consensus 28 pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a 94 (156)
T PRK05759 28 PIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEA 94 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778899999999999999888888888888888887777766666655555554455444443
No 38
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=69.11 E-value=28 Score=35.23 Aligned_cols=36 Identities=28% Similarity=0.287 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 388 ARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 388 ~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
..-+..+.+||++.+.|+.+++.|++++..|.....
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556789999999999999999999998876544
No 39
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=68.91 E-value=44 Score=32.48 Aligned_cols=50 Identities=24% Similarity=0.385 Sum_probs=37.0
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQ 413 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ 413 (456)
++.+..++|+.++.+.-+.|.+.+..=.+.+.+.|.++..-+.+-.++..
T Consensus 77 pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~ 126 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQ 126 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888999999999999888887777777777777665555444433
No 40
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=68.71 E-value=47 Score=31.43 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=39.5
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAE 417 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~ 417 (456)
++.+..++|+.++.+.-+.|.+.+..-.+...+.|.++...+.|-..+......
T Consensus 55 PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ 108 (181)
T PRK13454 55 RIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRA 108 (181)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888888888888888888887777777777777766666555554433
No 41
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=68.59 E-value=51 Score=32.89 Aligned_cols=68 Identities=16% Similarity=0.326 Sum_probs=47.6
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELK 431 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~~ 431 (456)
|+-+..++|+.++.++-+.|...+..=++..++.+.++..++.+-..+..+...--++.++.+++..+
T Consensus 29 Pi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~ 96 (250)
T PRK14474 29 PIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAR 96 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888888888888777777778877777766666665555544444544544443
No 42
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=67.83 E-value=37 Score=34.57 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=46.4
Q ss_pred cCCCCCCCCchhhHHHHHHHHHHHhhHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 355 IRKKRIIDGPVEKVVERRQRRMIKNRESA--ARSRARKQAY-TVELEAELNQLKEENAHLKQALAEMERKKKQQ 425 (456)
Q Consensus 355 ~~rk~~~~~~~ek~~eKRqrR~ikNReSA--~RSR~RKk~y-~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~ 425 (456)
.||+=..-+..||...||.|-...-.-+- +..|.-+-+| +.+|+++.+.|..||..|+++.+.|..+..+.
T Consensus 57 Kr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el 130 (292)
T KOG4005|consen 57 KRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHEL 130 (292)
T ss_pred HHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45444445677887777776444332222 2233444444 67899999999999999999988887765543
No 43
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=67.61 E-value=8.6 Score=33.20 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 389 RKQAYTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 389 RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
.|+.+++.|..++..|+.+|..|..++..+.+
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36778899999999999999999998887653
No 44
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=66.95 E-value=46 Score=34.58 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 366 EKVVERRQRRMIKNRESAARSRARKQAY---TVELEAELNQLKEENAHLKQALAEMERKKKQQYFEE 429 (456)
Q Consensus 366 ek~~eKRqrR~ikNReSA~RSR~RKk~y---~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~ 429 (456)
++.-.||+.|++.-=---++-|+.+.+- ++.||.+..+|++.-.+|.++|..|++-..+.+.+.
T Consensus 226 ~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 226 KKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445677788773333334455555554 456778888999999999999999988877776654
No 45
>PF15058 Speriolin_N: Speriolin N terminus
Probab=66.05 E-value=9.6 Score=37.34 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
.|.|.+++++|..||++||+++.-+++.+
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLirEN~ 35 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIRENH 35 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 36778888889999999998888776543
No 46
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=65.46 E-value=21 Score=29.64 Aligned_cols=24 Identities=42% Similarity=0.594 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
+|..+...|..+|..|+.+...|.
T Consensus 29 eLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 29 ELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 47
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=65.40 E-value=79 Score=29.44 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=44.1
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
|+.+..++|+.++.+.-..|...|..=++.+.+.+.++...+.+-.++..+...-.+..++.+++
T Consensus 43 pI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~ 107 (174)
T PRK07352 43 FLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEK 107 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888888888877777777777777766666665555544444444443433
No 48
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=65.28 E-value=85 Score=28.67 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=44.9
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
|+-+..++|+.++.+.-+.|...+..=.+...+.+.++...+.+-..+..+...--+..++.+++
T Consensus 29 pi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~ 93 (159)
T PRK13461 29 KIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVK 93 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788888888888888888888888888888877777666555555444444444444433
No 49
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.20 E-value=25 Score=33.15 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
+++|+.+++..+.+.+.|++|.+.+.
T Consensus 163 i~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 163 IEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444443333
No 50
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=64.93 E-value=63 Score=29.26 Aligned_cols=54 Identities=26% Similarity=0.402 Sum_probs=38.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
++..|=...||.......++...++.|+..+..|+.+++.+.+++..++.+..+
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~ 98 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQ 98 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777777777777777777777777777777777777766665544
No 51
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=64.26 E-value=91 Score=28.62 Aligned_cols=55 Identities=24% Similarity=0.278 Sum_probs=39.7
Q ss_pred CchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 363 GPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAE 417 (456)
Q Consensus 363 ~~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~ 417 (456)
.|+-+..++|+.++.+.-+.|.+.+..-.+..++.+.++...+.+-.++..+...
T Consensus 45 ~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~ 99 (156)
T CHL00118 45 KPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQK 99 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677888888888888888888887878888887777666655555444333
No 52
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=63.94 E-value=14 Score=39.15 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 387 RARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEE 429 (456)
Q Consensus 387 R~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~ 429 (456)
=.|-|.++..||.-+.+|++||..|+-++..+.++|.++..|.
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeees 164 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEES 164 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHH
Confidence 3566777788888899999999999999999999997766554
No 53
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=63.09 E-value=42 Score=38.54 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 397 LEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 397 LE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
+..+..+|+.|...|+.++...++.+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~ 568 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQI 568 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 54
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=62.80 E-value=99 Score=28.40 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=39.7
Q ss_pred CchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 363 GPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAE 417 (456)
Q Consensus 363 ~~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~ 417 (456)
.|+-+..++|+.++.+.-+.|.+.|..=++...+.+.++...+.+-..+..+...
T Consensus 31 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~ 85 (164)
T PRK14471 31 KPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEARE 85 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677888888888888888888888887778887777666665554444333
No 55
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=62.58 E-value=95 Score=28.92 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=45.5
Q ss_pred CchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 363 GPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 363 ~~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
.|+-+..++|+.++...-+.|...+..=.+.+.+.+.++...+.+-.++......--++.++.+++
T Consensus 41 kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~ 106 (175)
T PRK14472 41 GPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRAEITE 106 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888888888888888888888877776666665555444444444444433
No 56
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=62.40 E-value=30 Score=28.15 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 389 RKQAYTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 389 RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
.....+..++.++..|+.||.+|+.++..|..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566788899999999999999999988764
No 57
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.53 E-value=23 Score=26.87 Aligned_cols=27 Identities=37% Similarity=0.576 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+.|..+...|..||..|+.++..|..+
T Consensus 15 d~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 15 DSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777777777777776666544
No 58
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=61.23 E-value=17 Score=28.68 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
....++..|+.||..|+.+|+.+.
T Consensus 26 ~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 26 AARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446778888889999988877654
No 59
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.14 E-value=1.7e+02 Score=31.25 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=27.4
Q ss_pred hhhHHHHHHHHHHHhhHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 365 VEKVVERRQRRMIKNRESAAR-SRARKQAYT----VELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 365 ~ek~~eKRqrR~ikNReSA~R-SR~RKk~y~----eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
.||..+|++++| +|..|-. +=+|..+.+ .+|+.+++.|+.+-..|.+.++-|..+..
T Consensus 216 ~eklR~r~eeem--e~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~ 277 (365)
T KOG2391|consen 216 REKLRRRREEEM--ERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVR 277 (365)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444444444444 4444433 333333322 34555556666666666665555554433
No 60
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=61.08 E-value=30 Score=27.66 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERKKKQQ 425 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~ 425 (456)
..|+..+..++.||.+|+..++.+.+..+..
T Consensus 10 ~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 10 PRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667888888888888887776654
No 61
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=60.77 E-value=50 Score=31.94 Aligned_cols=37 Identities=11% Similarity=0.177 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 384 ARSRARKQAYTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 384 ~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
+.-=++|++++.+-+.+...++.+..+|+.++...++
T Consensus 138 ~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 138 KEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344457778887777777777777777776665544
No 62
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=60.59 E-value=1.1e+02 Score=28.68 Aligned_cols=65 Identities=18% Similarity=0.366 Sum_probs=43.0
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
|+-+..++|+.++.+.-+.|...|..=.+...+.+.++...+.+-..+..+...--+..++.+++
T Consensus 42 pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~ 106 (173)
T PRK13453 42 PLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIH 106 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888888888888777777777777777776666665555544444444444433
No 63
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=60.50 E-value=1.1e+02 Score=28.83 Aligned_cols=67 Identities=10% Similarity=0.175 Sum_probs=45.6
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEEL 430 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~ 430 (456)
|+-+..++|+.++.+.-..|.+.+..=++...+.+.++...+.+-.++......--++.++.+++..
T Consensus 48 PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A 114 (184)
T CHL00019 48 VLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQA 114 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666778888888888888888887777777777777776666666555555444444444444433
No 64
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=60.15 E-value=1.2e+02 Score=27.94 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=44.4
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
|+-+..++|+.++.++-+.|...+..=.+...+.+.++...+.+-..+..+...--++.++.+++
T Consensus 32 pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~ 96 (164)
T PRK14473 32 PVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIA 96 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888888888888777777777777776666666555544444333433433
No 65
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=60.10 E-value=91 Score=32.21 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=5.8
Q ss_pred hhhhccccccc
Q 043882 442 KEKLRIMRRNL 452 (456)
Q Consensus 442 ~~K~~~LRRT~ 452 (456)
..++..||||.
T Consensus 126 ~~~L~~L~ktN 136 (314)
T PF04111_consen 126 SNQLDRLRKTN 136 (314)
T ss_dssp HHHHHCHHT--
T ss_pred HHHHHHHHhcC
Confidence 44566777763
No 66
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=59.70 E-value=12 Score=33.81 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 390 KQAYTVELEAELNQLKEENAHLKQA 414 (456)
Q Consensus 390 Kk~y~eeLE~~v~~L~~eN~~L~~q 414 (456)
=|+.+.+|++++..|++||.-||.-
T Consensus 72 Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 72 LKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566778888888888888877753
No 67
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=59.58 E-value=37 Score=38.97 Aligned_cols=32 Identities=31% Similarity=0.585 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 386 SRARKQAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 386 SR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+|.|++ +||.|+.+|+.|......++..|+.+
T Consensus 543 ~r~r~~----~lE~E~~~lr~elk~kee~~~~~e~~ 574 (697)
T PF09726_consen 543 CRQRRR----QLESELKKLRRELKQKEEQIRELESE 574 (697)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 56666666665555555554444443
No 68
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=59.48 E-value=27 Score=32.41 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 402 NQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 402 ~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
..|+.+|..|+.+++.|.++.....+|
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E 103 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRE 103 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999988766555
No 69
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=58.91 E-value=45 Score=37.81 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043882 402 NQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 402 ~~L~~eN~~L~~ql~~l~~~ 421 (456)
+.|+.|...|..+-+.|+++
T Consensus 649 eRl~~erlrle~qRQrLERE 668 (940)
T KOG4661|consen 649 ERLKAERLRLERQRQRLERE 668 (940)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444444443
No 70
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=58.88 E-value=33 Score=30.43 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
+.+.+|...+..|.+||..|+.+...|.+...+
T Consensus 22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 22 EELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777788888888777777776554
No 71
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=58.66 E-value=54 Score=28.98 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+.|+.-.++|++|....+++|++|++.
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334444444455555555543
No 72
>PHA00728 hypothetical protein
Probab=58.48 E-value=11 Score=34.79 Aligned_cols=26 Identities=46% Similarity=0.615 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 399 AELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 399 ~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
.+|++|+.||++|++++++|+.-..+
T Consensus 5 teveql~keneelkkkla~leal~nn 30 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALMNN 30 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 46889999999999999998765544
No 73
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=57.98 E-value=32 Score=28.28 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=23.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 372 RQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHL 411 (456)
Q Consensus 372 RqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L 411 (456)
..+++.+-|.+|.++=..+-..+.+|..+++.|+.|+.++
T Consensus 27 ~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 27 ENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666677777666666555555555555555554444
No 74
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=57.59 E-value=20 Score=37.91 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
.|..|...|++||++|+.+++.|+.+++
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555554444
No 75
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=57.50 E-value=1.3e+02 Score=28.00 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=41.0
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
|+.+..++|+.++.+.=..|...+..-++...+.+.++...+.|-.++..+...--+..+
T Consensus 40 pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~ 99 (173)
T PRK13460 40 VILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLK 99 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888888888888888888877777777777777666555555444443333333
No 76
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=57.35 E-value=70 Score=29.18 Aligned_cols=52 Identities=25% Similarity=0.233 Sum_probs=40.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 375 RMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 375 R~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
|.++.|-.=---|+-=|+.|..||.+...++.-|..|.+++..|+...+++-
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER 66 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQER 66 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455666788999999999999999999999999998888743
No 77
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=57.26 E-value=24 Score=37.14 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
++....|..+.+.|+.+...|..+++++.....+
T Consensus 143 ~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~ 176 (342)
T PF06632_consen 143 QAENEHLQKENERLESEANKLLKQLEKFVNAKEE 176 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666666666666655443
No 78
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=56.06 E-value=46 Score=27.57 Aligned_cols=25 Identities=36% Similarity=0.524 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 397 LEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 397 LE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
|+.++..|+++|..|......|.++
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333444444444444334444333
No 79
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=55.10 E-value=24 Score=31.59 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 400 ELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 400 ~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
+..+|++||+-|+-+++-|.....
T Consensus 80 k~~~LeEENNlLklKievLLDMLt 103 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDMLA 103 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888887776655543
No 80
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=54.76 E-value=34 Score=33.20 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 389 RKQAYTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 389 RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
..+..+++|+.++..|+.+..++++.+.+|-.
T Consensus 103 ~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~ 134 (181)
T KOG3335|consen 103 KRKQEIMELRLKVEKLENAIAELTKFFSQLHS 134 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777887777777777777777753
No 81
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=54.53 E-value=54 Score=27.56 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
++.|+.+..+|+.||..|+-+++.+..
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 788888999999999999988888764
No 82
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=53.79 E-value=82 Score=29.70 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043882 398 EAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 398 E~~v~~L~~eN~~L~~ql~~l 418 (456)
+++++.|++|..+....++.|
T Consensus 160 ~~ei~~lk~el~~~~~~~~~L 180 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEAL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 83
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.58 E-value=60 Score=27.67 Aligned_cols=32 Identities=38% Similarity=0.540 Sum_probs=23.2
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 385 RSRARKQ----AYTVELEAELNQLKEENAHLKQALA 416 (456)
Q Consensus 385 RSR~RKk----~y~eeLE~~v~~L~~eN~~L~~ql~ 416 (456)
+-|.||. ..++.|..++..|.++|..|+.+++
T Consensus 64 ~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 64 RVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444453 4567788888889999999888765
No 84
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=53.05 E-value=1.6e+02 Score=28.07 Aligned_cols=53 Identities=17% Similarity=0.116 Sum_probs=24.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
++.+.+.+.+..-........+.+.+++.-++.|..|...|.-++..++++..
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~ 168 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLR 168 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444455444444444444444444444444433
No 85
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=52.21 E-value=1.6e+02 Score=28.50 Aligned_cols=63 Identities=8% Similarity=0.111 Sum_probs=41.2
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
|+-+..+.|+.++.++=+.|...|..=++++.+.+.++...+.+-.++......--++.++.+
T Consensus 72 Pi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i 134 (205)
T PRK06231 72 PTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSEL 134 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778888888888888877777777777777777666665555544444333333333
No 86
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=52.15 E-value=43 Score=26.76 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
+.+||.++..|+.....++++++++.+..
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESV 30 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888888887764
No 87
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=51.99 E-value=84 Score=30.59 Aligned_cols=51 Identities=27% Similarity=0.506 Sum_probs=40.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 376 MIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 376 ~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
+++-|.++..-|.+-+.+...||.+=..|+....-.+.+|..|++++-+.+
T Consensus 118 i~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e~y 168 (187)
T PF05300_consen 118 ILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAEFY 168 (187)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677777888889998888999999999999999999877654
No 88
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=51.97 E-value=50 Score=29.58 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
+.+.+|...+..|.+||..|+-+...|.++..+
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777788888887777777766554
No 89
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=51.74 E-value=1.2e+02 Score=23.84 Aligned_cols=56 Identities=29% Similarity=0.366 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 367 KVVERRQRRMIKNRESAARSRARK---QAYTVELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 367 k~~eKRqrR~ikNReSA~RSR~RK---k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
+.+.|+.+=.+.-|.+-.|-...- ...+..|+.+...|+.++..|+.++..|..+.
T Consensus 5 k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 5 KRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556665556555555554443 34567888999999999999999999887653
No 90
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=51.64 E-value=1.5e+02 Score=27.67 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=39.1
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
|+-+..++|+.++...-+.|...+..=++...+.+.++...+.+-.++......--+..++.+++
T Consensus 46 Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~ 110 (167)
T PRK08475 46 PLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEK 110 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777766666666666666665555555544444433333333333
No 91
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=51.12 E-value=31 Score=29.42 Aligned_cols=32 Identities=38% Similarity=0.510 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
..++|-.++..|+.+...|..++.+++.+...
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555666666666555555555443
No 92
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=50.92 E-value=2e+02 Score=26.73 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=40.7
Q ss_pred CchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 363 GPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 363 ~~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l 418 (456)
.|+-...++|+.++.+.-+.|.+.|..=.+...+.+.++..-+.+-.++..+...-
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~ 88 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKAD 88 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778888889888889988888888888888887776665555554444433
No 93
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=50.63 E-value=1.1e+02 Score=33.09 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=43.1
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
++-+..++|+.++.+.=+.|...+.+-.++..+.|.+++..+.|-.++..+-..--++.++.+++
T Consensus 25 Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~ 89 (445)
T PRK13428 25 PVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRA 89 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888777777777777777666666555555444444444443333
No 94
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.90 E-value=1.2e+02 Score=29.44 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 388 ARKQAYTVELEAELNQLKEENAHLKQALAE 417 (456)
Q Consensus 388 ~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~ 417 (456)
.+++..+..|+.+++.+++++..+++++.+
T Consensus 66 ~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 66 EELRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 95
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=49.66 E-value=42 Score=36.52 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043882 387 RARKQAYTVELEAELNQ--------------LKEENAHLKQALAEMERKKKQQYFEELKM 432 (456)
Q Consensus 387 R~RKk~y~eeLE~~v~~--------------L~~eN~~L~~ql~~l~~~~~q~~~e~~~~ 432 (456)
-+-|++|-+++|.+++. ..++...++++++-|.+.|.++++|+..-
T Consensus 388 EAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahL 447 (593)
T KOG4807|consen 388 EAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHL 447 (593)
T ss_pred HHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999998753 34677889999999999999999998753
No 96
>smart00340 HALZ homeobox associated leucin zipper.
Probab=49.42 E-value=37 Score=26.00 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
+-|..=.+.|.+||.+|++++++|..
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556667899999999998888764
No 97
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=49.24 E-value=1.6e+02 Score=27.96 Aligned_cols=54 Identities=20% Similarity=0.351 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 368 VVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 368 ~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
..++..+++|+.|.-|+-=-+.|-+...+|..++...++....+.+.|.++...
T Consensus 81 ~a~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~ 134 (152)
T PF11500_consen 81 KAEKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQ 134 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888777766666677777778777776666666666666665433
No 98
>KOG2829 consensus E2F-like protein [Transcription]
Probab=49.23 E-value=35 Score=35.57 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=24.4
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLK 405 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~ 405 (456)
.+++.++.|+|||.+- ++|++|+.||..++..|+
T Consensus 133 dv~~le~Er~k~~erI--------~kK~a~lqEl~~q~~~fk 166 (326)
T KOG2829|consen 133 DVSELEEERKKRMERI--------KKKAAQLQELIEQVSAFK 166 (326)
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 3555566667776543 788999999999986643
No 99
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=49.22 E-value=2e+02 Score=25.92 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 370 eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
.-+..-+..-.|...-|+..=...-++|+..+..|+.+|..+.+++.+|+.++.+..
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677778888888888887778888999999999999999999999988877654
No 100
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=49.21 E-value=96 Score=27.57 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=23.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 373 QRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 373 qrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
.-=|-.||.+++..++-+..|-..|.. +.|+..|.++++.+.++..+
T Consensus 52 ~IlmsQNRq~~~dr~ra~~D~~inl~a-----e~ei~~l~~~l~~l~~~~~~ 98 (108)
T PF06210_consen 52 LILMSQNRQAARDRLRAELDYQINLKA-----EQEIERLHRKLDALREKLGE 98 (108)
T ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHhHH
Confidence 334556777666544444444444433 33445555555555554433
No 101
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=48.86 E-value=40 Score=24.28 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
.|-.+.++|+...+.|+.+++.|...|
T Consensus 5 kL~sekeqLrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 355667788888888888888776554
No 102
>PLN02320 seryl-tRNA synthetase
Probab=48.85 E-value=59 Score=36.06 Aligned_cols=52 Identities=15% Similarity=0.088 Sum_probs=33.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 376 MIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYF 427 (456)
Q Consensus 376 ~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~ 427 (456)
-.+|..|.+-..+++++..++|.+++..|+++...|..++.+++.+..+.++
T Consensus 114 ~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 114 AERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred HHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333344455677777788888888888888887777666443
No 103
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=48.79 E-value=33 Score=31.16 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLK 412 (456)
Q Consensus 370 eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~ 412 (456)
-.|..|..++||.+ .++.+++|+.++..|+.+.++++
T Consensus 96 ~~Rs~~ke~~Ke~~------~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 96 YWRSARKEAKKEEE------LQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555554433 23455666666666666665554
No 104
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=48.34 E-value=45 Score=29.25 Aligned_cols=20 Identities=35% Similarity=0.326 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQ 413 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ 413 (456)
+++|+.+...|+.|...|+.
T Consensus 43 ~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 43 NAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 34444444455555554544
No 105
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=48.07 E-value=2.3e+02 Score=26.65 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=35.8
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQA 414 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~q 414 (456)
++.+..++|+.++.+.-+.|.+.|..=.+.+.+.+.++..-+.+-.++..+
T Consensus 51 ~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 51 MIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888888888888877777777777777776665555555444
No 106
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=47.88 E-value=2.3e+02 Score=26.86 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=25.4
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELN 402 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~ 402 (456)
++....++|+.++..+-..|.+.+..=.+...+.|.++.
T Consensus 34 pI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~ 72 (155)
T PRK06569 34 KAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEID 72 (155)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888887777664444444444443
No 107
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=47.62 E-value=2e+02 Score=28.38 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=30.1
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQ 413 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ 413 (456)
|+-+..++|+.++.+.-+.|.+.+..-.+...+.+.++...+.+-..+..
T Consensus 29 Pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~ 78 (246)
T TIGR03321 29 PILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLT 78 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667777777777777766665555555555555555444444444
No 108
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.19 E-value=38 Score=38.44 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=7.4
Q ss_pred cHHHHHHHhhc
Q 043882 184 TLEDFLIKAGV 194 (456)
Q Consensus 184 TLEDFLVrAGV 194 (456)
++|+-|.+||.
T Consensus 172 eIee~L~~agl 182 (652)
T COG2433 172 EIEEKLDEAGL 182 (652)
T ss_pred HHHHHHHhcCC
Confidence 46777777774
No 109
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=47.01 E-value=15 Score=28.41 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQ 413 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ 413 (456)
.++.|||++|..|++.|..|-.
T Consensus 18 vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHHh
Confidence 4567899999999998888854
No 110
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=46.73 E-value=2.2e+02 Score=28.00 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
+.|.+.|+..+..++.+..+|.++++++.....
T Consensus 69 ~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 69 EVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555554443
No 111
>PF14645 Chibby: Chibby family
Probab=46.66 E-value=60 Score=29.18 Aligned_cols=32 Identities=31% Similarity=0.258 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 397 LEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 397 LE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
|.++..+|++||.-|+-+++-|.....+.-+|
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlDMLtettae 107 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLDMLTETTAE 107 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556678888888888887777766655444
No 112
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=46.60 E-value=1.8e+02 Score=24.83 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 369 VERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 369 ~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
..+|..+.+.+=|++-..|.-+.....+|+.++..|...-..|-.+|.....++.
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~ 63 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARAN 63 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence 3456666666666666666555555577777777776666666666666665554
No 113
>PRK14127 cell division protein GpsB; Provisional
Probab=46.42 E-value=54 Score=29.35 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
++.|..++..|+++|..|+.++.+++.+..
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455556666666666666666666655433
No 114
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=46.16 E-value=43 Score=36.86 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQAL 415 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql 415 (456)
.++|++++.|+.||..|+.++
T Consensus 100 ~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 100 GDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666555
No 115
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=45.51 E-value=1e+02 Score=30.51 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 386 SRARKQAYTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 386 SR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
+--..-....+|.++.+.|++||.+|+.++.++++
T Consensus 63 ~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~ 97 (276)
T PRK13922 63 GVFESLASLFDLREENEELKKELLELESRLQELEQ 97 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556667778888888888888877776643
No 116
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=45.01 E-value=1.8e+02 Score=27.20 Aligned_cols=56 Identities=25% Similarity=0.302 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 369 VERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 369 ~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
.+|.......|++.+-+--.-+|+.++.|+.++..+..+...|...+..+..+...
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~ 84 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKEN 84 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888888888889999999999888777777777777776665443
No 117
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=44.09 E-value=91 Score=27.07 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 389 RKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 389 RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
=||-|-...+.++..|+.+|..|.++++.|..+...
T Consensus 39 LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 39 LKKSYEARWEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888889999999999999999999999877654
No 118
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=43.68 E-value=2.4e+02 Score=25.18 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=33.0
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQA 414 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~q 414 (456)
|+-+..++|+.++.++=+.|...+..=.+...+.+.++...+.+-..+...
T Consensus 19 pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~ 69 (147)
T TIGR01144 19 PLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIEN 69 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777777777777776677776666655554444433
No 119
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=43.41 E-value=73 Score=34.17 Aligned_cols=34 Identities=32% Similarity=0.358 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
..++|..++..|+++..+|..++.+++++..+.+
T Consensus 67 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 67 DAEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777788888888888877777766644
No 120
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=43.31 E-value=1.6e+02 Score=32.31 Aligned_cols=31 Identities=39% Similarity=0.431 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
++.+.++|.++..|++||..|..+.-..+..
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~ 77 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVREEAT 77 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888899999998887766554433
No 121
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=42.87 E-value=50 Score=39.55 Aligned_cols=34 Identities=32% Similarity=0.414 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 390 KQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 390 Kk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
+..++++|+..+-.|++||..|..+|..|...+.
T Consensus 528 ~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~q 561 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQ 561 (1195)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhH
Confidence 4456778888888899999999999999998544
No 122
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=42.71 E-value=1.9e+02 Score=32.67 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLK 412 (456)
Q Consensus 370 eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~ 412 (456)
.|....+.+-..........-+..++.|+.++...++++..|+
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554445555555544444333333333
No 123
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=42.67 E-value=24 Score=31.84 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAE 417 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~ 417 (456)
|+++.+|-++...|+.||+.|+++|.+
T Consensus 28 K~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 28 KQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 345677777777788888888877776
No 124
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=42.27 E-value=2.7e+02 Score=25.39 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=34.7
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLK 412 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~ 412 (456)
++-...++|+.++..+-+.|.+.+..=.+...+.+.++...+.+-.++.
T Consensus 26 pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii 74 (159)
T PRK09173 26 MIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIV 74 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888888887777777777777766554444433
No 125
>PRK14127 cell division protein GpsB; Provisional
Probab=42.19 E-value=53 Score=29.41 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
++++++...++.|..||.+|+.++..|+.+..+
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777888888888888777776554
No 126
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.14 E-value=76 Score=26.80 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
+.-|..+++.|+++|..|..+...+.+.+..
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~rea 50 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREA 50 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Confidence 4456666677777777776666655554443
No 127
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=41.31 E-value=1.5e+02 Score=26.52 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043882 401 LNQLKEENAHLKQALAEME 419 (456)
Q Consensus 401 v~~L~~eN~~L~~ql~~l~ 419 (456)
-..|+.+...++.++.+|.
T Consensus 100 k~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544
No 128
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.22 E-value=51 Score=36.33 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
..|+.+.+.|++||++|+++...+.++..
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45555666666666666655444444433
No 129
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=41.13 E-value=1.5e+02 Score=33.38 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q 043882 369 VERRQRRMIKNRESAARSRARKQAY 393 (456)
Q Consensus 369 ~eKRqrR~ikNReSA~RSR~RKk~y 393 (456)
+..++++-.+-|+-|.|+|++-++.
T Consensus 212 i~~~~~~~e~kr~Eaerk~~~~qEe 236 (591)
T KOG2412|consen 212 IRERKERSEEKREEAERKRRAHQEE 236 (591)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3455556666677777777666543
No 130
>PRK11637 AmiB activator; Provisional
Probab=41.12 E-value=2.1e+02 Score=30.32 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
+..++.++..|+.+...++.+++.++.
T Consensus 98 i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 98 LNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444433333333
No 131
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=41.10 E-value=1.2e+02 Score=32.45 Aligned_cols=53 Identities=26% Similarity=0.349 Sum_probs=33.5
Q ss_pred HHHHhhHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 375 RMIKNRESAARSRARK-QAY-TVELEAELNQLKEENAHLKQALAEMERKKKQQYF 427 (456)
Q Consensus 375 R~ikNReSA~RSR~RK-k~y-~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~ 427 (456)
|-.+|..|..--..+| ++. .++|.+++..|+++..+|..++.+++++..+.++
T Consensus 50 ~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 50 QAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544433222 222 5677778888888888888888888887776543
No 132
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=41.02 E-value=25 Score=38.76 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
.|++|++|+++|+++..+|.++++..++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 5566666666666666655555544443
No 133
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=40.68 E-value=80 Score=28.83 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
+.||.++..|+..-..|+.++++|+.+..
T Consensus 80 E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 80 ETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544443
No 134
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=40.55 E-value=2.3e+02 Score=24.13 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
|.-+..|-.+|...++||..|+.+.+-|.....+
T Consensus 29 Q~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~n 62 (80)
T PF10224_consen 29 QDSLEALSDRVEEVKEENEKLESENEYLQQYIGN 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777778888887766666544443
No 135
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=40.40 E-value=52 Score=36.21 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l 418 (456)
+|+.+.++|+.+-..|+..+.+|
T Consensus 113 ~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 113 ELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444433333
No 136
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=39.91 E-value=1.9e+02 Score=29.08 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
.+..+..++..|+.++..+.+++..+...
T Consensus 136 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 164 (301)
T PF14362_consen 136 QIARLDAEIAALQAEIDQLEKEIDRAQQE 164 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555544443
No 137
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.83 E-value=1e+02 Score=34.08 Aligned_cols=27 Identities=7% Similarity=0.235 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
.+++||++++.|+.|.+.|.++.++++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle 103 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQ 103 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 345666666666655543333333333
No 138
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=39.78 E-value=2.2e+02 Score=28.08 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=20.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 373 QRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLK 412 (456)
Q Consensus 373 qrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~ 412 (456)
.+.+.+-.++...-..+-+.++..++.++..|+.+...+.
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555444443
No 139
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.78 E-value=1.3e+02 Score=35.54 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=17.9
Q ss_pred ccccccccHHHHHHhhhcCCCCCcCCchHHH
Q 043882 33 QSSIYSLTLDEFQHTLCESGKNFGSMNMDEF 63 (456)
Q Consensus 33 Q~SiYSLTlDEfQ~~Lg~~GK~fGSMNMDEl 63 (456)
||-+.-+-|-++= .|-++.|| |-||.-||
T Consensus 43 qS~LP~~VLaqIW-ALsDldkD-Grmdi~Ef 71 (1118)
T KOG1029|consen 43 QSGLPTPVLAQIW-ALSDLDKD-GRMDIREF 71 (1118)
T ss_pred hcCCChHHHHHHH-HhhhcCcc-ccchHHHH
Confidence 4444555555554 35566665 78888887
No 140
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.76 E-value=2.4e+02 Score=25.91 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=12.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Q 043882 374 RRMIKNRESAARSRARKQAYTVEL 397 (456)
Q Consensus 374 rR~ikNReSA~RSR~RKk~y~eeL 397 (456)
.++...-+.|...-.+|++.++.|
T Consensus 113 ~~~~~~~~~~~~~l~~k~~~~~kl 136 (218)
T cd07596 113 ADALLTLQSLKKDLASKKAQLEKL 136 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444466666656665554444
No 141
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.76 E-value=2.4e+02 Score=25.52 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=7.8
Q ss_pred HHHHHHHhhHHHHHH
Q 043882 372 RQRRMIKNRESAARS 386 (456)
Q Consensus 372 RqrR~ikNReSA~RS 386 (456)
+..|+.+-|..|+.-
T Consensus 38 el~~l~~~r~~l~~E 52 (120)
T PF12325_consen 38 ELARLEAERDELREE 52 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555543
No 142
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=39.74 E-value=83 Score=24.81 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
.+..++..|+.++..|+.+.+.|+++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~e 46 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEE 46 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 143
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=39.69 E-value=20 Score=24.51 Aligned_cols=19 Identities=21% Similarity=0.553 Sum_probs=11.9
Q ss_pred cccCccccCCchHHHhHHH
Q 043882 131 LTLPAPLCRKTVEEVWSEI 149 (456)
Q Consensus 131 lTLPrtLS~KTVDEVWkdI 149 (456)
+++-.+|||.|-++.|+-+
T Consensus 4 ~~~~~PLSQeTF~~LW~~l 22 (25)
T PF08563_consen 4 ESPELPLSQETFSDLWNLL 22 (25)
T ss_dssp SS-----STCCHHHHHHTS
T ss_pred cCCCCCccHHHHHHHHHhc
Confidence 4556789999999999854
No 144
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=39.20 E-value=2.7e+02 Score=24.58 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAE 417 (456)
Q Consensus 365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~ 417 (456)
+-+..++|+.++...=+.|...+..-.+...+.+.++...+.+-..+......
T Consensus 30 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~ 82 (140)
T PRK07353 30 VGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEA 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777766666666666666666666666666555554444444333
No 145
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.65 E-value=1.4e+02 Score=30.37 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
++++.++...|.++|.+|..++++++++.+.
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~ 174 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKR 174 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555554444443
No 146
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=38.63 E-value=3e+02 Score=24.95 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=29.5
Q ss_pred CchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 363 GPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENA 409 (456)
Q Consensus 363 ~~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~ 409 (456)
.|+-+..++|+.++....+.|.+.+..=.+...+.+..+..-+.|-.
T Consensus 30 kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~ 76 (141)
T PRK08476 30 KPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEAN 76 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677788888888888877766655555555555544444333
No 147
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=38.52 E-value=3.3e+02 Score=25.32 Aligned_cols=46 Identities=28% Similarity=0.468 Sum_probs=34.3
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENA 409 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~ 409 (456)
++.+..+.|++++..+-..|.+.+.-=+++..+.+.++...+.+-.
T Consensus 30 pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~ 75 (161)
T COG0711 30 PILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQAS 75 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888888777777777777766554433
No 148
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=38.49 E-value=3.4e+02 Score=25.53 Aligned_cols=62 Identities=10% Similarity=0.129 Sum_probs=40.8
Q ss_pred CchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 363 GPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 363 ~~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
.|+-...++|+.++...=+.|.+.|..=.+...+.+.++..-+.|-.++..+-....++..+
T Consensus 27 kPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ 88 (154)
T PRK06568 27 KAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQ 88 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667788888888888888888877777777777766665555554444443333333
No 149
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=38.11 E-value=82 Score=30.34 Aligned_cols=36 Identities=31% Similarity=0.252 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
++++..|+.+.+.|+.+|..|+.++..+++.++.++
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li 145 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALI 145 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788999999999999999999999999988754
No 150
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=38.10 E-value=1.8e+02 Score=30.31 Aligned_cols=56 Identities=20% Similarity=0.329 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 369 VERRQRRMIKNRESAARSRARKQAYTVELEAE--------------LNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 369 ~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~--------------v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
...++..|+.+=+--.+-|.-||-+++.||+- +..|+.||..|....+.|++.++.
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqK 85 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQK 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 44555555555555556666666666666653 345788888888777777766554
No 151
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=38.03 E-value=15 Score=30.90 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.4
Q ss_pred ccccHHHHHHHh
Q 043882 181 GEMTLEDFLIKA 192 (456)
Q Consensus 181 GEMTLEDFLVrA 192 (456)
|=|||||||.|-
T Consensus 55 GW~tL~~fL~kh 66 (73)
T smart00243 55 GWETLDEYLLKH 66 (73)
T ss_pred cHHHHHHHHHhC
Confidence 679999999874
No 152
>PRK10884 SH3 domain-containing protein; Provisional
Probab=37.78 E-value=3.4e+02 Score=26.66 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
..+.+|+.+..+|++++..++.++..|+.+
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335567777777777777666666665544
No 153
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=37.07 E-value=1.6e+02 Score=22.84 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKM 432 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~~~ 432 (456)
++|...+..++.+|.+-..++.+|+......++.-|..
T Consensus 3 eeL~~~l~~~e~~~~~k~~~v~eLe~YiD~LL~rVmE~ 40 (48)
T PF09457_consen 3 EELISLLKKQEEENARKDSRVRELEDYIDNLLVRVMEQ 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888899999999999999999988777665554433
No 154
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=36.83 E-value=60 Score=28.53 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALA 416 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~ 416 (456)
+.+|+.++.+|+.||.-|++.++
T Consensus 80 i~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 80 IKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666655443
No 155
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=36.47 E-value=3.1e+02 Score=24.89 Aligned_cols=10 Identities=30% Similarity=0.674 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 043882 412 KQALAEMERK 421 (456)
Q Consensus 412 ~~ql~~l~~~ 421 (456)
+.++.+|..+
T Consensus 74 ~~el~~l~~r 83 (120)
T PF12325_consen 74 EQELEELQQR 83 (120)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 156
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=36.44 E-value=65 Score=29.30 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
+.-++++.+++.|+.+..+|..+++.++
T Consensus 105 ~Ke~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 105 KKEEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3335666777777777777777766654
No 157
>PRK06835 DNA replication protein DnaC; Validated
Probab=36.07 E-value=1.9e+02 Score=30.13 Aligned_cols=38 Identities=21% Similarity=0.348 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQL---------------KEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 391 k~y~eeLE~~v~~L---------------~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
--.+.+|+.++..+ +...++|++++.+|.++.++++.+
T Consensus 35 ~P~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~lL~~ 87 (329)
T PRK06835 35 IPEIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVKKAELLVS 87 (329)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777654 555678999999998887776655
No 158
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=35.95 E-value=1.6e+02 Score=27.65 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043882 387 RARKQAYTVELEAELNQL 404 (456)
Q Consensus 387 R~RKk~y~eeLE~~v~~L 404 (456)
-++|++|+.||..+...|
T Consensus 17 I~~K~~~LqEL~~Q~va~ 34 (142)
T PF08781_consen 17 IKKKKEQLQELILQQVAF 34 (142)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367999999999776654
No 159
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=35.93 E-value=38 Score=29.45 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=3.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQAL 415 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql 415 (456)
..+.+|+.++..++.....|+..|
T Consensus 46 ~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 46 EEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHCCCCT---------------
T ss_pred HHHHHHHhhhhhhhhHHHHHHHhh
Confidence 333444444444444444444433
No 160
>PLN02678 seryl-tRNA synthetase
Probab=35.87 E-value=1.4e+02 Score=32.57 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 390 KQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYF 427 (456)
Q Consensus 390 Kk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~ 427 (456)
.++..++|-+++..|+++...|..++.+++++..+.++
T Consensus 69 ~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 69 AKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLK 106 (448)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888988998888888888776443
No 161
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=35.86 E-value=80 Score=32.87 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=5.6
Q ss_pred HHHHHHhcCc
Q 043882 425 QYFEELKMKP 434 (456)
Q Consensus 425 ~~~e~~~~~~ 434 (456)
+++|.|+..-
T Consensus 131 QvieTmrssL 140 (305)
T PF15290_consen 131 QVIETMRSSL 140 (305)
T ss_pred HHHHHHHhhh
Confidence 3566666543
No 162
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=35.73 E-value=92 Score=25.15 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l 418 (456)
++||+.++..|+.|...++..+..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888887766543
No 163
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=35.49 E-value=1.1e+02 Score=31.23 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
..+++..++..+.+||.+|.+++++++.++
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ 165 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEY 165 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555554443
No 164
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=34.69 E-value=99 Score=31.47 Aligned_cols=13 Identities=23% Similarity=0.125 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 043882 399 AELNQLKEENAHL 411 (456)
Q Consensus 399 ~~v~~L~~eN~~L 411 (456)
+|.++|++|+.+|
T Consensus 73 ~EN~~Lr~e~~~l 85 (283)
T TIGR00219 73 YENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 165
>PF06311 NumbF: NUMB domain; InterPro: IPR010449 This entry represents a domain found in the cell-fate determinant Numb, and in related proteins. In Drosophila, two signalling pathways, one mediated by Numb and the other by Notch, play essential but antagonistic roles in enabling the two daughters to adopt different fates after a wide variety of asymmetric cell divisions []. Numb acts to inhibit Notch signalling, this inhibition being critical for many cell fate decisions []. Mammalian Numb (mNumb) has multiple functions and plays important roles in the regulation of neural development, including maintenance of neural progenitor cells and promotion of neuronal differentiation in the central nervous system (CNS) [].
Probab=34.61 E-value=14 Score=32.01 Aligned_cols=18 Identities=33% Similarity=0.294 Sum_probs=15.8
Q ss_pred CcccCCCcccCccccCCc
Q 043882 124 SLSRQASLTLPAPLCRKT 141 (456)
Q Consensus 124 ~LqRQGSlTLPrtLS~KT 141 (456)
-|+|||||-+...|+++|
T Consensus 14 ~L~RQgS~R~f~~l~~~~ 31 (88)
T PF06311_consen 14 MLERQGSFRGFPKLSQQT 31 (88)
T ss_pred HHHhhhcccccccccccC
Confidence 489999999999999883
No 166
>KOG3436 consensus 60S ribosomal protein L35 [Translation, ribosomal structure and biogenesis]
Probab=34.21 E-value=1.7e+02 Score=26.92 Aligned_cols=20 Identities=40% Similarity=0.443 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQA 414 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~q 414 (456)
++|++++..|+.|...|+-+
T Consensus 15 e~L~~ql~dLK~ELa~LRv~ 34 (123)
T KOG3436|consen 15 EQLLKQLDDLKVELAQLRVA 34 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777888887777777643
No 167
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=34.20 E-value=1.9e+02 Score=28.46 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERKKKQQYFEE 429 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~ 429 (456)
..|..++..|.+||..|....+.+..+.++...++
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~ 132 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEK 132 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhh
Confidence 45667777777777777777777777766665443
No 168
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=34.08 E-value=1.2e+02 Score=26.34 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
+.++.++..|+..-..|++++.+++...++
T Consensus 77 e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 77 ETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666676666666665544
No 169
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=33.77 E-value=1.6e+02 Score=29.09 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 380 RESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 380 ReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
|.-+-..+..+-+.+.++|.++.+.+.+.+.|+.++..|.++
T Consensus 150 rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~ 191 (262)
T PF14257_consen 150 RLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDR 191 (262)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334455677777788888888888888887777776655
No 170
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.51 E-value=1.5e+02 Score=25.05 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+-.+++|.++...|..|-..++...+.|+.+
T Consensus 24 QmEieELKEknn~l~~e~q~~q~~reaL~~e 54 (79)
T COG3074 24 QMEIEELKEKNNSLSQEVQNAQHQREALERE 54 (79)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 4444555555444444444444444444333
No 171
>PHA02562 46 endonuclease subunit; Provisional
Probab=33.06 E-value=2.4e+02 Score=30.37 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=14.5
Q ss_pred HHHHHHhhhcCCCCCcCCchHHHHhc
Q 043882 41 LDEFQHTLCESGKNFGSMNMDEFLTS 66 (456)
Q Consensus 41 lDEfQ~~Lg~~GK~fGSMNMDElLkn 66 (456)
||=+--.| -|++|...+-++++.+
T Consensus 44 l~aI~~~l--~G~~~~~~~~~~~~~~ 67 (562)
T PHA02562 44 LEALTFAL--FGKPFRDIKKGQLINS 67 (562)
T ss_pred HHHHHHHH--cCCCcCcCCHHHhhcc
Confidence 45444444 3678888777776643
No 172
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=33.05 E-value=1.7e+02 Score=30.12 Aligned_cols=42 Identities=24% Similarity=0.231 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 383 AARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 383 A~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
|.+-|..=|..++||.+|-.+-.-...-||.+++-|.++|.+
T Consensus 49 a~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~e 90 (277)
T PF15030_consen 49 ATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRE 90 (277)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHH
Confidence 333344444444444444333333334566666666666654
No 173
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=33.05 E-value=1.3e+02 Score=27.46 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 388 ARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 388 ~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
..|.+-+++|+.+++.|+.....|.++.+.+.++.++
T Consensus 66 ~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~e 102 (119)
T COG1382 66 VSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEE 102 (119)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778899999999999999999998888887664
No 174
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=32.91 E-value=1.5e+02 Score=24.52 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
..|+.+.+.|+.+...|..++..+..+
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~ 91 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKK 91 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 175
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=32.91 E-value=1.5e+02 Score=30.62 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+..||.++..++.++.....+|..+.++
T Consensus 167 l~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 167 LVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 3444445555555555555555554443
No 176
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=32.75 E-value=2.4e+02 Score=24.05 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 390 KQAYTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 390 Kk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
=-.+++..+.+...|+.||.-|..=|..|..
T Consensus 35 L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 35 LSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555543
No 177
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.50 E-value=1.4e+02 Score=25.51 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l 418 (456)
.-|..+++.|+++|..|..++..+
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~~ 44 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555543
No 178
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=32.26 E-value=4.7e+02 Score=27.09 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
++.++.+++++.+.+.+-.+++.++.++..+.-+.-++
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~ 243 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEME 243 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666677777777777777666665554444
No 179
>PRK11239 hypothetical protein; Provisional
Probab=32.08 E-value=72 Score=31.85 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
..||.+|..|+.|...|+.++++|..
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999988888765
No 180
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=31.90 E-value=4.2e+02 Score=26.46 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 389 RKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 389 RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
+-+..+..|+.++..|+..|..|..++.+++..+..
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 444556777777777888888888888777766554
No 181
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=31.85 E-value=3.3e+02 Score=28.76 Aligned_cols=10 Identities=50% Similarity=0.438 Sum_probs=6.3
Q ss_pred ccHHHHHHHh
Q 043882 183 MTLEDFLIKA 192 (456)
Q Consensus 183 MTLEDFLVrA 192 (456)
..-||-|++|
T Consensus 172 lpse~rlr~a 181 (445)
T KOG2891|consen 172 LPSEDRLRKA 181 (445)
T ss_pred CChHHHHHHH
Confidence 3457777766
No 182
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=31.68 E-value=2.5e+02 Score=28.48 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 388 ARKQAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 388 ~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
.-++..+++|+.+|.+++.+..++++++..++.+
T Consensus 48 ~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~k 81 (239)
T COG1579 48 EALEIELEDLENQVSQLESEIQEIRERIKRAEEK 81 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555554444443
No 183
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=31.58 E-value=1.3e+02 Score=29.84 Aligned_cols=19 Identities=47% Similarity=0.754 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043882 403 QLKEENAHLKQALAEMERK 421 (456)
Q Consensus 403 ~L~~eN~~L~~ql~~l~~~ 421 (456)
.|++||++|++++.+|+.+
T Consensus 73 ~l~~en~~L~~e~~~l~~~ 91 (276)
T PRK13922 73 DLREENEELKKELLELESR 91 (276)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 184
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.57 E-value=3.6e+02 Score=27.76 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=18.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 374 RRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAE 417 (456)
Q Consensus 374 rR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~ 417 (456)
.+|..-=+.....+.-+++.+++++.++..|+.+...|+.+|.+
T Consensus 55 ~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 55 ESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444444433
No 185
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=31.53 E-value=76 Score=32.60 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
-++.|+.++..|++||.+|+.++++++.+..
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~ 63 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQAQLN 63 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777777766554
No 186
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=31.18 E-value=4.2e+02 Score=25.57 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=33.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 375 RMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 375 R~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
|..++=..--..-.|| ++.+.|...+..++.++.+|..++.+|........++
T Consensus 62 ~~~s~~~~~~vk~L~k-~~~~~l~d~inE~t~k~~El~~~i~el~~~~~Ks~~~ 114 (165)
T PF09602_consen 62 REFSDLYEEYVKQLRK-ATGNSLNDSINEWTDKLNELSAKIQELLLSPSKSSFS 114 (165)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHH
Confidence 3333333333334444 6788888888888888888888887776555433333
No 187
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=31.00 E-value=2e+02 Score=31.13 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhHH
Q 043882 368 VVERRQRRMIKNRES 382 (456)
Q Consensus 368 ~~eKRqrR~ikNReS 382 (456)
..|+|+|++|+.=|.
T Consensus 111 AaE~khrKli~dLE~ 125 (561)
T KOG1103|consen 111 AAEKKHRKLIKDLEA 125 (561)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346666666665554
No 188
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=30.98 E-value=75 Score=33.86 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043882 390 KQAYTVELEAELNQLKE 406 (456)
Q Consensus 390 Kk~y~eeLE~~v~~L~~ 406 (456)
=|+..++|..||++||+
T Consensus 44 LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 44 LKKENNDLKIEVERLEN 60 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34557888888888843
No 189
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=30.96 E-value=1.1e+02 Score=30.65 Aligned_cols=36 Identities=8% Similarity=0.117 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 388 ARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 388 ~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
.|+.+|+..|+.+........+.|+++...|+++..
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ 136 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKARLE 136 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999988776555555555555554444443
No 190
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.81 E-value=65 Score=25.10 Aligned_cols=11 Identities=45% Similarity=0.422 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 043882 393 YTVELEAELNQ 403 (456)
Q Consensus 393 y~eeLE~~v~~ 403 (456)
.++.||+++++
T Consensus 56 ~l~~le~e~~~ 66 (68)
T PF06305_consen 56 ELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHh
Confidence 34444554444
No 191
>PF15294 Leu_zip: Leucine zipper
Probab=30.49 E-value=97 Score=32.00 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
|.++..||.+....-+|...|..+|.+++.
T Consensus 145 k~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 145 KERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666655
No 192
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=30.47 E-value=3.2e+02 Score=29.89 Aligned_cols=31 Identities=32% Similarity=0.389 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 388 ARKQAYTVELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 388 ~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l 418 (456)
...+.....|+.++..|+.++..+..++.+.
T Consensus 55 ~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s 85 (420)
T COG4942 55 REQQDQRAKLEKQLKSLETEIASLEAQLIET 85 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555444444443
No 193
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=30.45 E-value=1.3e+02 Score=26.05 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043882 401 LNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 401 v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
.+.|.+||+.|+.+....+.+.
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qv 53 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQV 53 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555544444444333
No 194
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=30.21 E-value=2.1e+02 Score=33.96 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=10.4
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 043882 372 RQRRMIKNRESAARSRARKQ 391 (456)
Q Consensus 372 RqrR~ikNReSA~RSR~RKk 391 (456)
.++|+.|+-|-|--.|+||.
T Consensus 922 e~er~rk~qE~~E~ER~rrE 941 (1259)
T KOG0163|consen 922 ELERLRKIQELAEAERKRRE 941 (1259)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34455555555555555543
No 195
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=30.09 E-value=86 Score=26.60 Aligned_cols=19 Identities=37% Similarity=0.697 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043882 403 QLKEENAHLKQALAEMERK 421 (456)
Q Consensus 403 ~L~~eN~~L~~ql~~l~~~ 421 (456)
.|.+||.+|++++..|+.+
T Consensus 4 ei~eEn~~Lk~eiqkle~E 22 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAE 22 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666644433
No 196
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=29.58 E-value=90 Score=30.15 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 043882 406 EENAHLKQALAEME 419 (456)
Q Consensus 406 ~eN~~L~~ql~~l~ 419 (456)
.+|+.+..++..+.
T Consensus 71 r~Ne~~~~~~~~l~ 84 (225)
T PF04340_consen 71 RENEAIFQRLHRLV 84 (225)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555544443
No 197
>PHA02109 hypothetical protein
Probab=29.44 E-value=1.5e+02 Score=29.18 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 389 RKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 389 RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
-|-+.+-+|+.+++.|..|...|+.++..+.++.+..+-|
T Consensus 190 ~~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~Vk~~LSE 229 (233)
T PHA02109 190 DKLKQISELTIKLEALSDEACQVKHKILNLRAEVKRRLSE 229 (233)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667789999999999999999999999988887766655
No 198
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=29.28 E-value=29 Score=28.90 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=15.4
Q ss_pred CcccccHHHHHHHhhcccc
Q 043882 179 TFGEMTLEDFLIKAGVVRE 197 (456)
Q Consensus 179 TLGEMTLEDFLVrAGVVrE 197 (456)
.|=.||.|||+.+|+-...
T Consensus 41 ~LC~lt~edF~~~~~~~~G 59 (75)
T cd08531 41 ELCKMTKEDFLRLTSAYNA 59 (75)
T ss_pred HHHcCCHHHHHHHcCCCcc
Confidence 5778999999999876543
No 199
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=29.25 E-value=3.8e+02 Score=30.40 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 043882 366 EKVVERRQRRMIKNRESAARSRARKQAYTVELEAEL 401 (456)
Q Consensus 366 ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v 401 (456)
|+-..||.--++|.-.-|...|.|||..-.|.|.+.
T Consensus 387 dema~kraallekqqrraeear~rkqqleae~e~kr 422 (708)
T KOG3654|consen 387 DEMAQKRAALLEKQQRRAEEARRRKQQLEAEKEQKR 422 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666677777778889999997655555443
No 200
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=29.16 E-value=3.8e+02 Score=25.35 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=23.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 043882 374 RRMIKNRESAARSRARKQAYTVELEA-------ELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 374 rR~ikNReSA~RSR~RKk~y~eeLE~-------~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
.++...-+.|...-.||++..+.|.. ++..++.+..++..++..++.++
T Consensus 131 ~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~ 186 (236)
T PF09325_consen 131 DKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEF 186 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555544432 23445555555555555444443
No 201
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=29.07 E-value=1.2e+02 Score=31.67 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l 418 (456)
++.|..|+..|++||..|+.+...|
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L 186 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQL 186 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444433
No 202
>PF15219 TEX12: Testis-expressed 12
Probab=28.96 E-value=73 Score=28.14 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=7.5
Q ss_pred hhhhcccccccC
Q 043882 442 KEKLRIMRRNLS 453 (456)
Q Consensus 442 ~~K~~~LRRT~S 453 (456)
+.|+.|||-+++
T Consensus 81 kqkre~LrQrlt 92 (100)
T PF15219_consen 81 KQKRECLRQRLT 92 (100)
T ss_pred HHHHHHHHHHHH
Confidence 346678886653
No 203
>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=28.88 E-value=20 Score=41.72 Aligned_cols=53 Identities=26% Similarity=0.330 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 370 ERRQRRMIKNRESAARSRARKQAY----TVELE-AELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 370 eKRqrR~ikNReSA~RSR~RKk~y----~eeLE-~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
-.+.+++++|=+.+..+|..+.-. +.+.+ ++...|+.||.+|+++|.+.+++.
T Consensus 725 vpKv~~l~t~p~~~se~q~n~~~~~ss~~~k~~eer~~~lk~EN~~l~~~i~ekee~i 782 (865)
T KOG1055|consen 725 VPKLRHLITNPQWASEAQRNMKTGPSSSVNENEEERLRLLKKENRRLRKKIMEKEERL 782 (865)
T ss_pred chhheeeecCchhhhhhhhccccCcccccchhHHHHhhhhhcccHHHHHhcccchHHH
Confidence 467888888888888888777665 55555 477889999999999998866553
No 204
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=28.85 E-value=2.1e+02 Score=23.20 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQA 414 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~q 414 (456)
+++++||.++..++...++|-..
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~ 26 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDV 26 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666554444444333
No 205
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=28.78 E-value=3.2e+02 Score=27.10 Aligned_cols=57 Identities=26% Similarity=0.343 Sum_probs=39.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
++..++-.-=|-+.+.|....+..++|+.++..|+.+.+.|+.++..+++. +.++.+
T Consensus 95 qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~-dpqv~~ 151 (203)
T KOG3433|consen 95 QKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQET-DPQVFE 151 (203)
T ss_pred hhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CHHHHH
Confidence 333444444455667777788888899999999988888888888877654 444444
No 206
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=28.59 E-value=3.1e+02 Score=24.70 Aligned_cols=42 Identities=21% Similarity=0.399 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 368 VVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQ 413 (456)
Q Consensus 368 ~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ 413 (456)
++.+..+|-.|||||-+ -|+..+-...+.-..|...|.-++.
T Consensus 52 R~K~E~~~q~r~rES~~----Er~K~~~s~~~~q~Lm~rQN~mm~~ 93 (121)
T PF10669_consen 52 RSKKEEKRQKRNRESKR----ERQKFIWSMNKQQSLMNRQNNMMKQ 93 (121)
T ss_pred HHHHHHHHHHHhhhhHH----HHHhHHhhhhHHHHHHHHHhHHHHH
Confidence 33445566777888743 2444444444433335555555443
No 207
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=28.51 E-value=4e+02 Score=30.39 Aligned_cols=55 Identities=29% Similarity=0.382 Sum_probs=34.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 375 RMIKNRESAARSRARKQAYTVELEAELNQLK------------------------EENAHLKQALAEMERKKKQQYFEE 429 (456)
Q Consensus 375 R~ikNReSA~RSR~RKk~y~eeLE~~v~~L~------------------------~eN~~L~~ql~~l~~~~~q~~~e~ 429 (456)
-..+|.+.-.+--..+++.+.+||.++..++ ..|.+||.+|.+|....-...-++
T Consensus 105 aqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~ 183 (617)
T PF15070_consen 105 AQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNEN 183 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555444443467778888887776543 457788888888877655544444
No 208
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=28.46 E-value=1.1e+02 Score=27.35 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043882 410 HLKQALAEMERKKKQQYFEEL 430 (456)
Q Consensus 410 ~L~~ql~~l~~~~~q~~~e~~ 430 (456)
+|++++++|..+-.+++++.+
T Consensus 82 ~lqkRle~l~~eE~~~L~~ei 102 (104)
T PF11460_consen 82 ELQKRLEELSPEELEALQAEI 102 (104)
T ss_pred HHHHHHHhCCHHHHHHHHHHh
Confidence 566666666655555555443
No 209
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=28.45 E-value=2.4e+02 Score=27.11 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 389 RKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 389 RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
.-+..+..|+.+...|+.+-.+|+.+++.++++..
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666655555555544433
No 210
>PRK09343 prefoldin subunit beta; Provisional
Probab=28.13 E-value=1.7e+02 Score=26.07 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
+.++.++..|+..-..|++++.+++....+
T Consensus 81 E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 81 ELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466666666666666666666665544
No 211
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=27.58 E-value=4.5e+02 Score=23.52 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=27.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 383 AARSRARKQA-YTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 383 A~RSR~RKk~-y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
.-+...|.++ -+-.++.++.-|.-.|..|.++++.|+.+..
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443 5666777888888888888888888766644
No 212
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=27.47 E-value=4.3e+02 Score=25.40 Aligned_cols=32 Identities=34% Similarity=0.533 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKKKQQ 425 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~ 425 (456)
..+|+.++..|+.++..|..++.++..++...
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888999999999999999988887654
No 213
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=27.43 E-value=4.3e+02 Score=26.17 Aligned_cols=54 Identities=24% Similarity=0.197 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 369 VERRQRRMIKNRESAARSRARKQAYTV----ELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 369 ~eKRqrR~ikNReSA~RSR~RKk~y~e----eLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
.-+|.||-+..+.++-.-+-+=-+.++ ..-.++..|++.|.+|+....+|...|
T Consensus 21 l~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 21 LVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888877655443322221 222344456655555555555554443
No 214
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=27.37 E-value=33 Score=27.85 Aligned_cols=18 Identities=39% Similarity=0.398 Sum_probs=15.5
Q ss_pred CCcccccHHHHHHHhhcc
Q 043882 178 PTFGEMTLEDFLIKAGVV 195 (456)
Q Consensus 178 ~TLGEMTLEDFLVrAGVV 195 (456)
..|=.||.|||+.||+.+
T Consensus 38 k~LC~ms~edF~~~~p~~ 55 (68)
T cd08757 38 QTLCSMTEEEFREAAGSY 55 (68)
T ss_pred HHHHcCCHHHHHHHcCCc
Confidence 468899999999999873
No 215
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=27.22 E-value=4.4e+02 Score=24.61 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043882 396 ELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKM 432 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~~~ 432 (456)
.|..+-..|..-....+.+|..+.......++.++..
T Consensus 74 ~L~~r~~~l~~v~~~a~~kL~~~~~~~y~~~l~~li~ 110 (188)
T PRK02292 74 RLNARKEVLEDVRNQVEDEIASLDGDKREELTKSLLD 110 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 5566666666667777777777665444455555544
No 216
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=26.96 E-value=2e+02 Score=24.78 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEE 429 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~ 429 (456)
..+..|..-+..|++.|..|..+|.+|.+..+|.-.+.
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888889999999998888877755543
No 217
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=26.88 E-value=2.4e+02 Score=24.23 Aligned_cols=10 Identities=40% Similarity=0.451 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 043882 394 TVELEAELNQ 403 (456)
Q Consensus 394 ~eeLE~~v~~ 403 (456)
++.||.||.+
T Consensus 6 leqLE~KIqq 15 (79)
T PRK15422 6 FEKLEAKVQQ 15 (79)
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 218
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.69 E-value=3e+02 Score=28.16 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 381 ESAARSRARKQAYTVELEAELNQLK 405 (456)
Q Consensus 381 eSA~RSR~RKk~y~eeLE~~v~~L~ 405 (456)
-|.+..+.+.+..+++|+.++...+
T Consensus 60 ~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 60 RSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666655
No 219
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=26.51 E-value=2.2e+02 Score=28.47 Aligned_cols=37 Identities=11% Similarity=0.102 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
+.+++.+.+++.++.....|+++.+++..++...+-|
T Consensus 165 ~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 165 TELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3344444455566677777888888887777766555
No 220
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=26.29 E-value=5.3e+02 Score=28.30 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhhH
Q 043882 368 VVERRQRRMIKNRE 381 (456)
Q Consensus 368 ~~eKRqrR~ikNRe 381 (456)
..++|.+|.+|-|+
T Consensus 287 ~~~~~~~~~~~~~~ 300 (429)
T PRK00247 287 HAEQRAQYREKQKE 300 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555444444
No 221
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=26.28 E-value=5.1e+02 Score=24.53 Aligned_cols=36 Identities=25% Similarity=0.461 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 386 SRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 386 SR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
.|.+....+.++| ..++.+...|..+++.|+...++
T Consensus 72 ~r~~~e~~l~~~E---d~~~~e~k~L~~~v~~Le~e~r~ 107 (158)
T PF09744_consen 72 LRKQAEEELLELE---DQWRQERKDLQSQVEQLEEENRQ 107 (158)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444333 24556666666666666665554
No 222
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.17 E-value=4.9e+02 Score=30.38 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=13.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 374 RRMIKNRESAARSRARKQAYTVELEAELNQLK 405 (456)
Q Consensus 374 rR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~ 405 (456)
+.+..-++.+.+-++.-++...+|+.+.+.|+
T Consensus 525 ~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 556 (771)
T TIGR01069 525 KELEQKNEHLEKLLKEQEKLKKELEQEMEELK 556 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333344444444433
No 223
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=26.16 E-value=1.6e+02 Score=30.08 Aligned_cols=26 Identities=38% Similarity=0.383 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAE 417 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~ 417 (456)
+.++.+..++..|++||.+|+.-+..
T Consensus 83 ~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 83 AELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34456667778888888888765543
No 224
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=26.14 E-value=52 Score=34.61 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 388 ARKQAYTVELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 388 ~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
+...+|+.+||.+..+|--.|.+||+.+.+..
T Consensus 101 QQTa~yI~~Le~~Kt~ll~qn~elKr~~~E~~ 132 (373)
T KOG0561|consen 101 QQTADYIHQLEGHKTELLPQNGELKRLKLEED 132 (373)
T ss_pred HHHHHHHHHHHhcccccccccchHHHHHhhhc
Confidence 34557999999988888888888888776654
No 225
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=26.10 E-value=2e+02 Score=24.63 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+.|+.++..|+..-..|.+++.+++.+
T Consensus 73 e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 73 ETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555544444443
No 226
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=26.00 E-value=37 Score=28.14 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=14.2
Q ss_pred CcccccHHHHHHHhhcc
Q 043882 179 TFGEMTLEDFLIKAGVV 195 (456)
Q Consensus 179 TLGEMTLEDFLVrAGVV 195 (456)
-|=.||.|||+.||+-.
T Consensus 39 ~LC~ls~edF~~~~p~~ 55 (71)
T cd08533 39 DLCALGKERFLELAPDF 55 (71)
T ss_pred HHHcCCHHHHHHHcCCC
Confidence 36789999999999853
No 227
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.84 E-value=1.1e+02 Score=28.32 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 390 KQAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 390 Kk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+.--.++|..++..|+.|+..|..+|+.|...
T Consensus 107 ~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 107 SEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33445677888888888888888888888763
No 228
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=25.82 E-value=37 Score=28.41 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=15.9
Q ss_pred CcccccHHHHHHHhhccccC
Q 043882 179 TFGEMTLEDFLIKAGVVREQ 198 (456)
Q Consensus 179 TLGEMTLEDFLVrAGVVrE~ 198 (456)
-|=.||.|||+.+|+-...|
T Consensus 41 ~LC~LskedF~~~ap~~~Gd 60 (75)
T cd08540 41 ELCKMTKDDFQRLTPSYNAD 60 (75)
T ss_pred HHHhCCHHHHHHHcCCCCch
Confidence 37789999999999865443
No 229
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.78 E-value=3.7e+02 Score=30.91 Aligned_cols=30 Identities=33% Similarity=0.467 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
++..+|+.++..|+.+++.|+.+++.+..+
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555443
No 230
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=25.67 E-value=1.6e+02 Score=26.75 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
+.++-|..++..|++.|..|+++..-|+.......+.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ 103 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLASPEQLA 103 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH
Confidence 4455556666666666666665555554444333333
No 231
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.59 E-value=4.6e+02 Score=30.57 Aligned_cols=9 Identities=33% Similarity=0.534 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 043882 403 QLKEENAHL 411 (456)
Q Consensus 403 ~L~~eN~~L 411 (456)
.|+++-++|
T Consensus 547 ~l~~~~~~l 555 (771)
T TIGR01069 547 ELEQEMEEL 555 (771)
T ss_pred HHHHHHHHH
Confidence 333333333
No 232
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.37 E-value=2.6e+02 Score=25.64 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
+.+..|+.++..++.+-..++.+.+.+....+
T Consensus 145 ~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~ 176 (218)
T cd07596 145 AKVEELEEELEEAESALEEARKRYEEISERLK 176 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666655555555555544444433
No 233
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=25.35 E-value=1.7e+02 Score=29.70 Aligned_cols=10 Identities=50% Similarity=0.846 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 043882 404 LKEENAHLKQ 413 (456)
Q Consensus 404 L~~eN~~L~~ 413 (456)
|++||++|++
T Consensus 96 l~~EN~rLr~ 105 (283)
T TIGR00219 96 LKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 234
>smart00338 BRLZ basic region leucin zipper.
Probab=25.29 E-value=3.3e+02 Score=21.24 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
.+..|+.+...|..+...|..++..|...
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777776654
No 235
>PRK04325 hypothetical protein; Provisional
Probab=25.25 E-value=2.2e+02 Score=23.55 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLK 412 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~ 412 (456)
++++||.++..++...++|-
T Consensus 10 Ri~~LE~klAfQE~tIe~LN 29 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLN 29 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37777777766554444443
No 236
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=25.06 E-value=38 Score=27.18 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=14.9
Q ss_pred CCcccccHHHHHHHhhc
Q 043882 178 PTFGEMTLEDFLIKAGV 194 (456)
Q Consensus 178 ~TLGEMTLEDFLVrAGV 194 (456)
..|=.||.|||+.|++.
T Consensus 36 ~~Lc~ls~edF~~~~p~ 52 (66)
T cd08203 36 KELCLLTKEDFLRRAPS 52 (66)
T ss_pred HHHHhCCHHHHHHHcCC
Confidence 36788999999999987
No 237
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=24.90 E-value=1.2e+02 Score=24.77 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043882 401 LNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 401 v~~L~~eN~~L~~ql~~l~~ 420 (456)
|+.|++...+|..++..|+.
T Consensus 16 VevLK~~I~eL~~~n~~Le~ 35 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEE 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 238
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=24.75 E-value=1e+02 Score=32.43 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043882 405 KEENAHLKQALAEMERKKK 423 (456)
Q Consensus 405 ~~eN~~L~~ql~~l~~~~~ 423 (456)
+.|..++.++|.+|+++.+
T Consensus 288 RsElDe~~krL~ELrR~vr 306 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVK 306 (320)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 239
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=24.74 E-value=1.5e+02 Score=34.63 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 380 RESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 380 ReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
-+=|+.|+..||+|++||.-++..|.+ ..+|+++..+++.
T Consensus 419 sq~~kl~k~q~k~y~de~dyr~kl~~k--kq~ke~~~r~k~~ 458 (763)
T TIGR00993 419 AQMAKLSKEQRKAYLEEYDYRVKLLQK--KQWREELKRMKMM 458 (763)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 355778889999999999988876543 2334444444333
No 240
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.72 E-value=3.9e+02 Score=26.99 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 043882 408 NAHLKQALAEMERK 421 (456)
Q Consensus 408 N~~L~~ql~~l~~~ 421 (456)
|..++..++..++.
T Consensus 197 ~~~~k~e~~Rf~~~ 210 (243)
T cd07666 197 NNALKADWERWKQN 210 (243)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 241
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=24.69 E-value=2.7e+02 Score=30.87 Aligned_cols=14 Identities=29% Similarity=0.190 Sum_probs=9.8
Q ss_pred Hhcccccccccccc
Q 043882 64 LTSIWNAEENQAIN 77 (456)
Q Consensus 64 LknIWtAEE~Qa~~ 77 (456)
|++||++.-.|-..
T Consensus 6 ll~~~~ldg~~lh~ 19 (575)
T KOG4403|consen 6 LLSISTLDGSQLHS 19 (575)
T ss_pred eeHhhhcccchhcc
Confidence 67788887776543
No 242
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.54 E-value=5.3e+02 Score=29.95 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
+.+.+|+.+.+.|++.-+.|..+++++.++++
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe 610 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQE 610 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677776666677777766666544
No 243
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=24.48 E-value=2e+02 Score=30.20 Aligned_cols=38 Identities=29% Similarity=0.341 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 386 SRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 386 SR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
-|++..+.+++|+.+...|..+|...+..|..|....+
T Consensus 102 ~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~ 139 (355)
T PF09766_consen 102 QRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLK 139 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 35666667777888888888888877777777766655
No 244
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.43 E-value=5.9e+02 Score=26.40 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAE 417 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~ 417 (456)
+++||.+.+.|..|...|+.+..+
T Consensus 66 L~~LE~e~~~l~~el~~le~e~~~ 89 (314)
T PF04111_consen 66 LEELEKEREELDQELEELEEELEE 89 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 245
>PRK04863 mukB cell division protein MukB; Provisional
Probab=24.39 E-value=3.5e+02 Score=34.06 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
.+....+++.+++.+.++.|+.-..+.++.....+.++..|+.....+.+++.+++.+.++
T Consensus 985 ~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~ 1045 (1486)
T PRK04863 985 DLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQD 1045 (1486)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555678888888888888888888888888888888777777777777777766655443
No 246
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=24.37 E-value=2.2e+02 Score=26.19 Aligned_cols=32 Identities=31% Similarity=0.378 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 390 KQAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 390 Kk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
|-..+..|..++..|+.+...+..++..+...
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555554443
No 247
>PRK09039 hypothetical protein; Validated
Probab=24.28 E-value=4.3e+02 Score=27.65 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043882 404 LKEENAHLKQALAEMERKK 422 (456)
Q Consensus 404 L~~eN~~L~~ql~~l~~~~ 422 (456)
++.+..+.+.+++.|.++.
T Consensus 163 ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 163 SEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443333
No 248
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=24.18 E-value=1.1e+02 Score=24.49 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043882 397 LEAELNQLKEENAHLKQALA 416 (456)
Q Consensus 397 LE~~v~~L~~eN~~L~~ql~ 416 (456)
|..++..|+++|.+|+.-+.
T Consensus 38 l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 38 LIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777765443
No 249
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=24.13 E-value=4.8e+02 Score=29.58 Aligned_cols=66 Identities=23% Similarity=0.314 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 365 VEKVVERRQRRMIKNRESAA----------RSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEEL 430 (456)
Q Consensus 365 ~ek~~eKRqrR~ikNReSA~----------RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~ 430 (456)
+.++.++.++....-|+.+. --..==|..+..||.++..|+.||..|+..|..+.....++.+-.+
T Consensus 125 lr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~ 200 (546)
T KOG0977|consen 125 LRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRV 200 (546)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
No 250
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.11 E-value=2e+02 Score=27.66 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043882 400 ELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 400 ~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+...|+.++.+|+.+++.|+.+
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e 126 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKE 126 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 251
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=24.09 E-value=1.6e+02 Score=25.03 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+.+|.++..+|+++...|+.++.++.+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678888888999999888777776654
No 252
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=23.73 E-value=37 Score=28.22 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=8.8
Q ss_pred ccccHHHHHHH
Q 043882 181 GEMTLEDFLIK 191 (456)
Q Consensus 181 GEMTLEDFLVr 191 (456)
|.++.+||+.-
T Consensus 66 G~I~f~eF~~~ 76 (88)
T cd05030 66 GQLSFEEFLVL 76 (88)
T ss_pred CcCcHHHHHHH
Confidence 67899999853
No 253
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=23.58 E-value=4.2e+02 Score=32.33 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhhhhh
Q 043882 367 KVVERRQRRMIKNRESAARSR-ARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKMKPYTKAQKAKEKL 445 (456)
Q Consensus 367 k~~eKRqrR~ikNReSA~RSR-~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~~~~~~~~~~k~~~K~ 445 (456)
.+..++.+++.|-=.-+...- ..=+..+++.|.+.+.|+.|++.|..++..|.++ .+.+.+.++.-..-+..- ..++
T Consensus 368 ~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e-~~~~~~~~~~~~ee~~~i-~~~i 445 (1074)
T KOG0250|consen 368 RKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREE-LNEVKEKAKEEEEEKEHI-EGEI 445 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHH-HHHH
Q ss_pred cccccc
Q 043882 446 RIMRRN 451 (456)
Q Consensus 446 ~~LRRT 451 (456)
..|||.
T Consensus 446 ~~l~k~ 451 (1074)
T KOG0250|consen 446 LQLRKK 451 (1074)
T ss_pred HHHHHH
No 254
>PRK14877 conjugal transfer mating pair stabilization protein TraN; Provisional
Probab=23.53 E-value=47 Score=38.91 Aligned_cols=32 Identities=19% Similarity=0.454 Sum_probs=26.4
Q ss_pred cccccHHHHHHhhhcCCCCCcCCchHHHHhcccccccc
Q 043882 36 IYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEEN 73 (456)
Q Consensus 36 iYSLTlDEfQ~~Lg~~GK~fGSMNMDElLknIWtAEE~ 73 (456)
---+|+||||. | ||..|+|+||+..|--+..-
T Consensus 946 C~GfT~eEfQk-L-----DFSkIDlSEf~~dl~~a~~l 977 (1062)
T PRK14877 946 CVGLSIKQIQQ-L-----DFDKIDLTEWINDAVQVGEV 977 (1062)
T ss_pred CCCcCHHHHhh-C-----CcccccHHHHHHHHHHhccC
Confidence 34589999996 4 99999999999988766554
No 255
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=23.47 E-value=2.3e+02 Score=25.88 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERKKKQQYFEELK 431 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~~ 431 (456)
++-.+++..|++||....+++.+..++ ++.+++.+.
T Consensus 100 e~Q~~~i~~L~~E~~~~~~el~~~v~e-~e~ll~~v~ 135 (144)
T PF11221_consen 100 EEQLKRIKELEEENEEAEEELQEAVKE-AEELLKQVQ 135 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
No 256
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.29 E-value=4.8e+02 Score=28.11 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
..|+.++..|+.++.++..++..+..++++
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~ 390 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQDELDK 390 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 444555555555555555555555554443
No 257
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.23 E-value=5.6e+02 Score=23.12 Aligned_cols=55 Identities=27% Similarity=0.350 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 369 VERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 369 ~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
...+.+++...-+.....-.|=+..+++++.++..++..-..|..++..+....+
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555566666666665555554555554444444433
No 258
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=23.18 E-value=3.7e+02 Score=25.10 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 043882 407 ENAHLKQALAEMERK 421 (456)
Q Consensus 407 eN~~L~~ql~~l~~~ 421 (456)
.|++|+.+++.|+.+
T Consensus 52 d~eeLk~~i~~lq~~ 66 (155)
T PF06810_consen 52 DNEELKKQIEELQAK 66 (155)
T ss_pred CHHHHHHHHHHHHHH
Confidence 344444444444433
No 259
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=23.14 E-value=5.1e+02 Score=31.47 Aligned_cols=6 Identities=17% Similarity=1.005 Sum_probs=4.0
Q ss_pred hHHHhH
Q 043882 142 VEEVWS 147 (456)
Q Consensus 142 VDEVWk 147 (456)
--+||+
T Consensus 223 KSDVWS 228 (1021)
T PTZ00266 223 KSDMWA 228 (1021)
T ss_pred hhHHHH
Confidence 357886
No 260
>PRK00295 hypothetical protein; Provisional
Probab=23.11 E-value=2.6e+02 Score=22.71 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHL 411 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L 411 (456)
++++||.++..++....+|
T Consensus 6 Ri~~LE~kla~qE~tie~L 24 (68)
T PRK00295 6 RVTELESRQAFQDDTIQAL 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777776554443333
No 261
>TIGR02750 TraN_Ftype type-F conjugative transfer system mating-pair stabilization protein TraN. TraN is a large cysteine-rich outer membrane protein involved in the mating-pair stabilization (adhesin) component of the F-type conjugative plamid transfer system. TraN is believed to interact with the core type IV secretion system apparatus through the TraV protein.
Probab=23.10 E-value=50 Score=37.19 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=21.9
Q ss_pred ccccHHHHHHhhhcCCCCCcCCchHHHHhccc
Q 043882 37 YSLTLDEFQHTLCESGKNFGSMNMDEFLTSIW 68 (456)
Q Consensus 37 YSLTlDEfQ~~Lg~~GK~fGSMNMDElLknIW 68 (456)
--+|+||||. | ||..|+|.||...|-
T Consensus 528 ~G~t~~elq~-i-----dfs~iD~se~~~~l~ 553 (572)
T TIGR02750 528 RGITPEELQQ-I-----NFESIDFSPFYEDLH 553 (572)
T ss_pred CCCCHHHHhh-C-----CcccccHHHHHHHHH
Confidence 3589999996 4 999999999997654
No 262
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=23.08 E-value=1.6e+02 Score=26.07 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
.++++.+.|..+|..|++++..|...
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44555555666666666666655554
No 263
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=22.97 E-value=5.6e+02 Score=24.41 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043882 402 NQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 402 ~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
..|+.....|+.++.+++.++.
T Consensus 115 ~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 115 EKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555444433
No 264
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=22.94 E-value=2e+02 Score=24.25 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
+.+.+|-.+.+.|+++...|.++|-.++..+-+
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888888888888888877765
No 265
>PRK00736 hypothetical protein; Provisional
Probab=22.83 E-value=2.7e+02 Score=22.68 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHL 411 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L 411 (456)
+++++||.++..++...++|
T Consensus 5 ~Ri~~LE~klafqe~tie~L 24 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEEL 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34777777776554443333
No 266
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=22.80 E-value=5.4e+02 Score=25.34 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=6.8
Q ss_pred HHHHHHHHHhhHHHH
Q 043882 370 ERRQRRMIKNRESAA 384 (456)
Q Consensus 370 eKRqrR~ikNReSA~ 384 (456)
|++.||++.--+--+
T Consensus 108 E~rhrr~i~eLe~EK 122 (192)
T PF09727_consen 108 EKRHRRTIQELEEEK 122 (192)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 267
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=22.72 E-value=3.8e+02 Score=23.62 Aligned_cols=18 Identities=44% Similarity=0.602 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043882 397 LEAELNQLKEENAHLKQA 414 (456)
Q Consensus 397 LE~~v~~L~~eN~~L~~q 414 (456)
|+.++..+..++..|+.+
T Consensus 85 l~~~~~~~~~~~~~l~~~ 102 (118)
T PF13815_consen 85 LEERLQELQQEIEKLKQK 102 (118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 268
>PRK02793 phi X174 lysis protein; Provisional
Probab=22.71 E-value=2.7e+02 Score=22.95 Aligned_cols=20 Identities=30% Similarity=0.195 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHL 411 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L 411 (456)
+++.+||.++..++....+|
T Consensus 8 ~Ri~~LE~~lafQe~tIe~L 27 (72)
T PRK02793 8 ARLAELESRLAFQEITIEEL 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666544444333
No 269
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=22.58 E-value=3e+02 Score=24.28 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 399 AELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 399 ~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
..+..|++++..+..+++.++++.
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~ 103 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKL 103 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 270
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.55 E-value=5.9e+02 Score=23.57 Aligned_cols=56 Identities=14% Similarity=0.310 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
++...+...+++..=+ ....+-++++++++..+..+......|..++.+++...++
T Consensus 135 l~~~~~~~~~e~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 135 LDESIKELEKEIRELQ----KELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLEQ 190 (191)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 271
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=22.43 E-value=4.3e+02 Score=21.46 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 043882 404 LKEENAHLKQALAEME 419 (456)
Q Consensus 404 L~~eN~~L~~ql~~l~ 419 (456)
.+..|..+.++|.+..
T Consensus 23 vk~~n~~~e~kLqeaE 38 (61)
T PF08826_consen 23 VKSANLAFESKLQEAE 38 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 272
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=22.40 E-value=5.1e+02 Score=22.37 Aligned_cols=33 Identities=33% Similarity=0.439 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
....+.+.++..|..+...|+..+..+.....+
T Consensus 74 k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 74 KKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666777777777777766666553
No 273
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=22.17 E-value=2.9e+02 Score=30.27 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 380 RESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 380 ReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
|.|-+..-+||+++++.|+.....|..+..-....-++++-
T Consensus 87 r~a~k~~~~RK~~~i~~l~~~~~~ld~~d~~yeEikt~~~l 127 (425)
T PF04599_consen 87 RKALKNTIKRKREEIENLEDCIKNLDVDDEFYEEIKTDLEL 127 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 66777788899999999988877655444333333333333
No 274
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=21.96 E-value=1.5e+02 Score=24.39 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAE 417 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~ 417 (456)
+.||++++..|+.|.+.|+.++..
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568888888888888888766543
No 275
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.92 E-value=1.8e+02 Score=24.27 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
+.|..+..|+.||=.|+-++--|++...
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455555666666666555555555444
No 276
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=21.84 E-value=5.8e+02 Score=24.76 Aligned_cols=53 Identities=32% Similarity=0.413 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 370 ERRQRRMIKNRESAAR-SRARKQA---YTVELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 370 eKRqrR~ikNReSA~R-SR~RKk~---y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
.|-+.=+.+.||.=+| .=.+|+. .+..|+.++..++..-..|+.++..|+.++
T Consensus 73 ~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki 129 (219)
T TIGR02977 73 EKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKL 129 (219)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455554332 3233333 334444555555555555555555554443
No 277
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=21.71 E-value=3.2e+02 Score=29.13 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
.+..|+.+...|+.+...+++++..++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (398)
T PTZ00454 30 ELEFLDIQEEYIKEEQKNLKRELIRAKEE 58 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666777666776666665554
No 278
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.68 E-value=1.9e+02 Score=25.36 Aligned_cols=23 Identities=4% Similarity=-0.018 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l 418 (456)
.++.++..|+.++.+|+.+++-|
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diL 97 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELL 97 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665555444
No 279
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.62 E-value=3.1e+02 Score=25.31 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 043882 410 HLKQALAEMERKKK 423 (456)
Q Consensus 410 ~L~~ql~~l~~~~~ 423 (456)
+|...+.+|+.++.
T Consensus 113 el~~~i~~l~~e~~ 126 (169)
T PF07106_consen 113 ELREEIEELEEEIE 126 (169)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 280
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.49 E-value=4.6e+02 Score=27.03 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=16.3
Q ss_pred CCCcccccHHHHHHHhhccc
Q 043882 177 QPTFGEMTLEDFLIKAGVVR 196 (456)
Q Consensus 177 Q~TLGEMTLEDFLVrAGVVr 196 (456)
.....-++|.|||--.||-=
T Consensus 8 ~~~~~~isL~~FL~~~~I~F 27 (325)
T PF08317_consen 8 DEDYEPISLQDFLNMTGIRF 27 (325)
T ss_pred cCCCCCcCHHHHHHHhCcee
Confidence 45566799999999999865
No 281
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.45 E-value=1.2e+02 Score=29.97 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
+||.+|+.|+.|-.+|++++..+.
T Consensus 189 dlearv~aLe~eva~L~~rld~ll 212 (215)
T COG3132 189 DLEARVEALEQEVAELRARLDSLL 212 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888888888888888777653
No 282
>PRK12355 conjugal transfer mating pair stabilization protein TraN; Reviewed
Probab=21.39 E-value=57 Score=36.65 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=23.1
Q ss_pred ccccHHHHHHhhhcCCCCCcCCchHHHHhccccc
Q 043882 37 YSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNA 70 (456)
Q Consensus 37 YSLTlDEfQ~~Lg~~GK~fGSMNMDElLknIWtA 70 (456)
--+|+||||. | ||..|+|.||...|-.+
T Consensus 514 ~g~t~~elq~-i-----dfs~id~se~~~~~~~~ 541 (558)
T PRK12355 514 SGFTVDELQK-I-----DFSRIDFSEFYEDLMNN 541 (558)
T ss_pred CCCCHHHHhh-C-----CcccccHHHHHHHHHhh
Confidence 3589999996 4 99999999998877543
No 283
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=21.31 E-value=2.6e+02 Score=27.26 Aligned_cols=31 Identities=39% Similarity=0.558 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
|...|+..+..|+.+...++++++++...+|
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK 167 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEVNRERK 167 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554444
No 284
>PRK10698 phage shock protein PspA; Provisional
Probab=21.19 E-value=6.3e+02 Score=24.84 Aligned_cols=57 Identities=28% Similarity=0.392 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHhhHHHHH-HHHHHHHHH---HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 043882 367 KVVERRQRRMIKNRESAAR-SRARKQAYT---VELEAEL-------NQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 367 k~~eKRqrR~ikNReSA~R-SR~RKk~y~---eeLE~~v-------~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
+.+.|-+.=+.++||.=+| .=.+|+.|. ..|+.++ ..|+.....|+.++.+++.++.
T Consensus 70 ~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~ 137 (222)
T PRK10698 70 EWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ 137 (222)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566665333 344444443 2333333 3455555555555555555433
No 285
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.17 E-value=3.8e+02 Score=26.94 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=17.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Q 043882 373 QRRMIKNRESAARSRARKQAYTVEL 397 (456)
Q Consensus 373 qrR~ikNReSA~RSR~RKk~y~eeL 397 (456)
++-.-||+..|-.|=+|||.|=..|
T Consensus 53 ~k~~tkNKR~AlqaLkrKK~~E~qL 77 (221)
T KOG1656|consen 53 RKYGTKNKRMALQALKRKKRYEKQL 77 (221)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3445578888888888998874333
No 286
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=21.16 E-value=2.3e+02 Score=25.58 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 043882 384 ARSRARKQAYTVELEAELN---QLKEENAHLK 412 (456)
Q Consensus 384 ~RSR~RKk~y~eeLE~~v~---~L~~eN~~L~ 412 (456)
..=-+-|+.|++||+.... .|..-|+.|.
T Consensus 29 ~eLEkYkqly~eElk~r~SLs~kL~ktnerLa 60 (111)
T PF12001_consen 29 TELEKYKQLYLEELKLRKSLSNKLNKTNERLA 60 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888888876543 3444444443
No 287
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=21.16 E-value=3.1e+02 Score=24.72 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhHHHhhhhhcccccc
Q 043882 412 KQALAEMERKKKQQYFEELKMKPYTKAQKAKEKLRIMRRN 451 (456)
Q Consensus 412 ~~ql~~l~~~~~q~~~e~~~~~~~~~~~k~~~K~~~LRRT 451 (456)
+++++.+.++..+.+.+..+..|.|-.|.++..-||||=.
T Consensus 24 ~~~~~~F~~~L~~~L~~ry~~HW~P~~P~kGsayRcIrin 63 (118)
T PF07742_consen 24 RRQVDRFAEELENLLCERYKGHWYPENPSKGSAYRCIRIN 63 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS--TTSTTTTHHHH-EEES
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCceEEEEEc
Confidence 4667777788888888889999999999888899999733
No 288
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=21.12 E-value=1.3e+02 Score=23.42 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043882 402 NQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 402 ~~L~~eN~~L~~ql~~l~~~ 421 (456)
++|+.|+..|++.+-+|..+
T Consensus 14 eqlrrelnsLR~~vhelctR 33 (48)
T PF10845_consen 14 EQLRRELNSLRRSVHELCTR 33 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 57888899998888887655
No 289
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=21.11 E-value=7.7e+02 Score=23.92 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 043882 380 RESAARSRARKQAYTVELEAELN 402 (456)
Q Consensus 380 ReSA~RSR~RKk~y~eeLE~~v~ 402 (456)
..+-+..+.+++++...||.++.
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~~ 120 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKIE 120 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Confidence 44444455555555555554444
No 290
>PF14989 CCDC32: Coiled-coil domain containing 32
Probab=21.01 E-value=1.4e+02 Score=28.21 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEEN 408 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN 408 (456)
.|+..||.|++.|+..+
T Consensus 56 ~YLasLE~KL~rik~~~ 72 (148)
T PF14989_consen 56 VYLASLERKLKRIKGKN 72 (148)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 46666666666665555
No 291
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=21.00 E-value=2e+02 Score=32.48 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
.|+++|=.+++.||++|..|.+++.+++.+..+...+
T Consensus 370 ~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 370 GQINNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666666667778888888888888887776654443
No 292
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.97 E-value=6e+02 Score=29.56 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
.|.++.+.|.+..++.+.+.+.|.+++
T Consensus 590 ~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 590 SLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443
No 293
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=20.96 E-value=96 Score=26.06 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 397 LEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 397 LE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
.+.++++|-+.++.|.++++.|+.
T Consensus 40 d~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 40 DQALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666777777666644
No 294
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=20.95 E-value=3.1e+02 Score=25.01 Aligned_cols=30 Identities=30% Similarity=0.324 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
+..||..+..|-.+...|++.+.++.++..
T Consensus 10 v~~le~~l~~l~~el~~lK~~l~~lvEEN~ 39 (114)
T COG4467 10 VDNLEEQLGVLLAELGGLKQHLGSLVEENT 39 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 445555555555555555555555554443
No 295
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=20.85 E-value=8e+02 Score=26.96 Aligned_cols=14 Identities=21% Similarity=0.097 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 043882 388 ARKQAYTVELEAEL 401 (456)
Q Consensus 388 ~RKk~y~eeLE~~v 401 (456)
.-||++.++.+++.
T Consensus 331 ~~~~~~~~~~~~~k 344 (429)
T PRK00247 331 EIKKTRTAEKNEAK 344 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555544433
No 296
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=20.78 E-value=3.2e+02 Score=24.23 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 370 ERRQRRMIKNRESAARSRARKQ--------AYTVELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 370 eKRqrR~ikNReSA~RSR~RKk--------~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
..+.+|++-.+..+-..--..- .....|...++.++.+|+.|.++...|+.+.
T Consensus 20 ~~~~~~~l~~~l~~~l~~f~~~~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei 80 (117)
T COG2919 20 RVRRRRILTLVLLALLALFQYLAWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEI 80 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544322211 1123334444455555555555555544443
No 297
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=20.77 E-value=4.5e+02 Score=24.85 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
.+.++.++.++..++.....++++.+.+.+..+.
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~ 195 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISENIKK 195 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555555555555554443
No 298
>COG5562 Phage envelope protein [General function prediction only]
Probab=20.67 E-value=50 Score=30.84 Aligned_cols=18 Identities=50% Similarity=0.765 Sum_probs=15.0
Q ss_pred ccccHHHH---HHHhhccccC
Q 043882 181 GEMTLEDF---LIKAGVVREQ 198 (456)
Q Consensus 181 GEMTLEDF---LVrAGVVrE~ 198 (456)
||.|.|+| |.+|||.|=-
T Consensus 87 GqttF~ef~~~la~AGVfrwv 107 (137)
T COG5562 87 GQTTFEEFCSALAEAGVFRWV 107 (137)
T ss_pred CCccHHHHHHHHHhCCeEEEE
Confidence 78899999 5799999843
No 299
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.50 E-value=5.6e+02 Score=28.50 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
..+.|+.++.+|+.||.+|+.-+..|.-.+.
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~d 328 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLAD 328 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778899999988877766655444
No 300
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=20.50 E-value=52 Score=27.55 Aligned_cols=53 Identities=13% Similarity=-0.009 Sum_probs=30.5
Q ss_pred cccCccccCCchHHHhHHHHh---cCCCCCCCCCCCCCCCCCCcccccCCCCcccccHHHHHHHhhc
Q 043882 131 LTLPAPLCRKTVEEVWSEIHR---GKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAGV 194 (456)
Q Consensus 131 lTLPrtLS~KTVDEVWkdI~k---~~~~~~~~~~~~~~~~~~~~~~~~RQ~TLGEMTLEDFLVrAGV 194 (456)
|-||..=-.=|.+.|+.=|.- +-.- ...... ..---..|=.||.|||+.||..
T Consensus 4 L~ip~DP~~Ws~~~V~~WL~w~~~ef~L---------~~~~~~--F~mnG~~LC~ls~edF~~r~p~ 59 (76)
T cd08532 4 LGISPDPYQWSPANVQKWLLWTEHQYRL---------PPPPRC--FELNGKDLCALSEEDFRRRAPQ 59 (76)
T ss_pred CCCCCChhhcCHHHHHHHHHHHHHHhCC---------CCchhc--CCCCHHHHHcCCHHHHHHHcCC
Confidence 456666666788888765542 2211 000000 0111236889999999999876
No 301
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.42 E-value=4.7e+02 Score=23.81 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKKKQQYFEE 429 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~ 429 (456)
++.|+.++..|+..-..|..-.+.+....+..+..+
T Consensus 83 ~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~~~~~ 118 (134)
T cd04779 83 VQLVCDQIDGLEHRLKQLKPIASQTDRAQRMKMTKE 118 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555556666555555555555555444444443
No 302
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.39 E-value=43 Score=33.77 Aligned_cols=14 Identities=43% Similarity=0.805 Sum_probs=12.0
Q ss_pred ccCCchHHHhHHHH
Q 043882 137 LCRKTVEEVWSEIH 150 (456)
Q Consensus 137 LS~KTVDEVWkdI~ 150 (456)
||++-|+||||++.
T Consensus 1 ls~~~v~evW~~~t 14 (235)
T cd04405 1 LSPEVVEEIWKEQT 14 (235)
T ss_pred CCHHHHHHHHHHHH
Confidence 67888999999874
No 303
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.31 E-value=3.2e+02 Score=29.92 Aligned_cols=34 Identities=35% Similarity=0.380 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
+...|.++++.|..+.+.+..++.+++.+.++.+
T Consensus 69 ~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l 102 (429)
T COG0172 69 DAEELIAEVKELKEKLKELEAALDELEAELDTLL 102 (429)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5677777777777777777777777776665544
No 304
>PRK10093 primosomal replication protein N''; Provisional
Probab=20.30 E-value=5e+02 Score=25.18 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhHHHHH
Q 043882 369 VERRQRRMIKNRESAAR 385 (456)
Q Consensus 369 ~eKRqrR~ikNReSA~R 385 (456)
-|||..-|++.||++-.
T Consensus 114 ~ERRL~~Mv~dre~~L~ 130 (171)
T PRK10093 114 FERRLLEMVAERRARLA 130 (171)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47899999999988755
No 305
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.25 E-value=6.2e+02 Score=30.30 Aligned_cols=7 Identities=43% Similarity=1.085 Sum_probs=3.9
Q ss_pred HHhcccc
Q 043882 63 FLTSIWN 69 (456)
Q Consensus 63 lLknIWt 69 (456)
.|.-||-
T Consensus 50 VLaqIWA 56 (1118)
T KOG1029|consen 50 VLAQIWA 56 (1118)
T ss_pred HHHHHHH
Confidence 4555664
No 306
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=20.24 E-value=4e+02 Score=20.27 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQ 413 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ 413 (456)
...+.+|+.++..|+.++..|+.
T Consensus 31 e~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 31 EQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567777888888888887765
No 307
>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.
Probab=20.15 E-value=53 Score=30.69 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=8.4
Q ss_pred CcccccHHHHHHHhh
Q 043882 179 TFGEMTLEDFLIKAG 193 (456)
Q Consensus 179 TLGEMTLEDFLVrAG 193 (456)
+=|.+|.||| |.||
T Consensus 24 etG~iTPeEF-V~AG 37 (145)
T PF03986_consen 24 ETGVITPEEF-VAAG 37 (145)
T ss_dssp HHS---HHHH-HHHH
T ss_pred ccceeCHHHH-HHhh
Confidence 3489999999 6677
No 308
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=20.10 E-value=5.4e+02 Score=26.00 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 370 eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
-+|-|=+.||.|==.+-|+ -+..+..|..+++.|+..|.+|-+++.-|..-
T Consensus 86 sQRDRFR~Rn~ELE~elr~-~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRK-QQQTISSLRREVESLRADNVKLYEKIRYLQSY 136 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444445555554444432 34457899999999999999999998877543
No 309
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=20.01 E-value=7.3e+02 Score=27.37 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=25.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 377 IKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 377 ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
-+|--+|+.-=+|-.+...+|..++..|-++-..|..+...|....|+
T Consensus 129 ~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~ 176 (499)
T COG4372 129 RQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQ 176 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555566666666655555555555555544443
Done!