Query 043882
Match_columns 456
No_of_seqs 233 out of 766
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 15:51:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 6.7E-15 2.3E-19 113.1 5.6 53 371-423 1-53 (55)
2 2wt7_A Proto-oncogene protein 99.3 3.3E-12 1.1E-16 100.2 8.7 55 370-424 1-55 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.2 2.2E-11 7.4E-16 94.7 8.6 54 371-424 1-54 (61)
4 2dgc_A Protein (GCN4); basic d 99.2 3.8E-11 1.3E-15 94.6 6.8 52 372-423 10-61 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.1 1.1E-10 3.7E-15 91.1 7.5 53 371-423 1-53 (62)
6 1ci6_A Transcription factor AT 98.9 3.9E-09 1.3E-13 82.9 7.3 54 371-424 2-55 (63)
7 1gu4_A CAAT/enhancer binding p 98.6 1.8E-07 6.1E-12 76.7 8.7 60 365-424 9-68 (78)
8 1hjb_A Ccaat/enhancer binding 98.6 2.1E-07 7.2E-12 77.7 8.7 60 365-424 9-68 (87)
9 3a5t_A Transcription factor MA 98.4 1.5E-08 5.1E-13 87.6 -2.7 60 364-423 30-96 (107)
10 1gd2_E Transcription factor PA 98.3 2.8E-06 9.6E-11 68.3 8.6 57 372-428 9-65 (70)
11 2wt7_B Transcription factor MA 98.0 3.3E-05 1.1E-09 64.9 9.8 59 365-423 21-79 (90)
12 2oqq_A Transcription factor HY 95.9 0.0094 3.2E-07 43.5 4.6 31 391-421 2-32 (42)
13 1skn_P DNA-binding domain of S 95.8 0.0042 1.5E-07 52.2 2.8 35 365-399 56-90 (92)
14 2c9l_Y EB1, zebra, BZLF1 trans 92.1 0.7 2.4E-05 35.7 7.8 39 375-413 5-43 (63)
15 1kd8_B GABH BLL, GCN4 acid bas 89.1 0.64 2.2E-05 32.9 4.8 30 393-422 2-31 (36)
16 2oxj_A Hybrid alpha/beta pepti 88.9 0.51 1.7E-05 33.0 4.1 29 393-421 2-30 (34)
17 3m48_A General control protein 88.2 0.52 1.8E-05 32.8 3.7 28 394-421 2-29 (33)
18 1kd8_A GABH AIV, GCN4 acid bas 85.3 1 3.5E-05 31.9 4.0 30 393-422 2-31 (36)
19 2kz5_A Transcription factor NF 85.1 0.092 3.2E-06 44.1 -1.6 28 365-392 60-87 (91)
20 3c3f_A Alpha/beta peptide with 85.0 1.1 3.9E-05 31.3 4.1 29 393-421 2-30 (34)
21 1fmh_A General control protein 84.2 1.6 5.6E-05 29.7 4.5 29 394-422 3-31 (33)
22 1deb_A APC protein, adenomatou 82.6 3 0.0001 31.7 5.8 39 394-432 5-43 (54)
23 3c3g_A Alpha/beta peptide with 82.2 2.3 7.9E-05 29.6 4.7 28 394-421 2-29 (33)
24 3s9g_A Protein hexim1; cyclin 82.0 6.7 0.00023 33.5 8.5 26 391-416 64-89 (104)
25 2bni_A General control protein 81.9 1.7 5.7E-05 30.5 3.9 29 393-421 2-30 (34)
26 2xdj_A Uncharacterized protein 81.1 15 0.0005 30.1 10.0 43 386-428 21-63 (83)
27 1uo4_A General control protein 80.7 1.9 6.6E-05 30.2 3.9 29 393-421 2-30 (34)
28 1gmj_A ATPase inhibitor; coile 80.5 9.7 0.00033 31.6 8.7 58 363-420 20-79 (84)
29 2hy6_A General control protein 80.1 2.1 7.1E-05 30.0 3.9 29 393-421 2-30 (34)
30 2wq1_A General control protein 79.3 2.5 8.6E-05 29.4 4.1 28 394-421 2-29 (33)
31 2oa5_A Hypothetical protein BQ 78.5 1.1 3.6E-05 38.9 2.5 39 392-430 8-56 (110)
32 1dip_A Delta-sleep-inducing pe 78.5 2 6.9E-05 35.0 4.0 23 391-413 21-43 (78)
33 1nkp_B MAX protein, MYC proto- 77.9 3.8 0.00013 32.8 5.5 32 391-422 46-77 (83)
34 1am9_A Srebp-1A, protein (ster 76.7 3.5 0.00012 33.2 5.0 50 369-418 13-76 (82)
35 1nlw_A MAD protein, MAX dimeri 76.6 4.5 0.00015 32.7 5.6 35 389-423 44-78 (80)
36 2yy0_A C-MYC-binding protein; 75.9 3.8 0.00013 31.0 4.7 25 400-424 20-44 (53)
37 2wuj_A Septum site-determining 75.3 2.7 9.1E-05 32.0 3.7 30 392-421 27-56 (57)
38 2oqq_A Transcription factor HY 75.2 5.8 0.0002 29.0 5.2 24 392-415 17-40 (42)
39 2dfs_A Myosin-5A; myosin-V, in 74.4 11 0.00037 43.3 10.0 31 392-422 1016-1046(1080)
40 1gd2_E Transcription factor PA 72.1 30 0.001 27.5 9.2 31 393-423 37-67 (70)
41 1p9i_A Cortexillin I/GCN4 hybr 71.4 4.9 0.00017 27.0 3.7 26 396-421 3-28 (31)
42 3oja_A Leucine-rich immune mol 69.4 27 0.00091 35.4 10.6 38 386-423 429-466 (487)
43 1hjb_A Ccaat/enhancer binding 69.1 36 0.0012 28.1 9.4 68 357-424 5-75 (87)
44 3oja_A Leucine-rich immune mol 67.8 26 0.0009 35.4 10.2 53 375-427 425-477 (487)
45 1nkp_A C-MYC, MYC proto-oncoge 66.1 15 0.00051 30.0 6.6 35 389-423 49-83 (88)
46 3hnw_A Uncharacterized protein 65.2 43 0.0015 29.6 9.8 23 396-418 93-115 (138)
47 1go4_E MAD1 (mitotic arrest de 65.1 11 0.00038 32.0 5.7 31 393-423 13-43 (100)
48 2r2v_A GCN4 leucine zipper; co 64.3 12 0.00041 26.2 4.7 28 393-420 2-29 (34)
49 2dgc_A Protein (GCN4); basic d 63.9 18 0.00061 28.0 6.2 53 364-416 6-61 (63)
50 1zme_C Proline utilization tra 62.9 4.9 0.00017 30.2 2.9 26 391-416 43-68 (70)
51 3a2a_A Voltage-gated hydrogen 61.6 11 0.00039 29.0 4.6 28 398-425 10-37 (58)
52 2yy0_A C-MYC-binding protein; 60.9 12 0.00042 28.2 4.7 23 394-416 28-50 (53)
53 3oja_B Anopheles plasmodium-re 60.3 46 0.0016 34.2 10.5 25 395-419 540-564 (597)
54 3s9g_A Protein hexim1; cyclin 59.2 23 0.0008 30.2 6.6 35 395-429 40-81 (104)
55 2ve7_C Kinetochore protein NUF 59.1 8.7 0.0003 37.0 4.5 59 370-428 119-184 (250)
56 3mq9_A Bone marrow stromal ant 58.2 56 0.0019 32.8 10.5 11 140-150 141-151 (471)
57 3nmd_A CGMP dependent protein 55.3 15 0.0005 29.7 4.5 31 388-418 36-66 (72)
58 1jnm_A Proto-oncogene C-JUN; B 53.9 43 0.0015 25.3 6.8 51 370-420 4-57 (62)
59 3oja_B Anopheles plasmodium-re 53.9 62 0.0021 33.2 10.2 30 394-423 532-561 (597)
60 1ik9_A DNA repair protein XRCC 53.7 33 0.0011 32.4 7.4 37 389-425 136-172 (213)
61 1hlo_A Protein (transcription 53.3 11 0.00037 30.0 3.4 23 391-413 56-78 (80)
62 1gu4_A CAAT/enhancer binding p 52.8 90 0.0031 25.2 8.9 65 357-421 5-72 (78)
63 3vmx_A Voltage-gated hydrogen 52.5 31 0.0011 25.8 5.5 29 398-426 3-31 (48)
64 2k8f_B Cellular tumor antigen 52.0 6 0.0002 28.1 1.5 22 128-149 5-26 (39)
65 1nkp_B MAX protein, MYC proto- 51.5 12 0.00042 29.7 3.5 22 396-417 58-79 (83)
66 3o0z_A RHO-associated protein 51.4 1.1E+02 0.0037 28.2 10.2 51 371-421 69-119 (168)
67 2lz1_A Nuclear factor erythroi 51.3 0.33 1.1E-05 40.7 -5.9 25 367-391 62-86 (90)
68 3he5_A Synzip1; heterodimeric 50.9 16 0.00054 26.8 3.6 22 394-415 5-26 (49)
69 2jee_A YIIU; FTSZ, septum, coi 50.8 41 0.0014 27.6 6.6 22 396-417 24-45 (81)
70 3mq7_A Bone marrow stromal ant 50.4 61 0.0021 28.4 7.9 17 394-410 73-89 (121)
71 3ghg_A Fibrinogen alpha chain; 48.2 37 0.0013 36.5 7.4 43 385-427 103-145 (562)
72 1fmh_B General control protein 47.3 42 0.0014 22.8 5.0 29 394-422 3-31 (33)
73 4ath_A MITF, microphthalmia-as 46.3 38 0.0013 27.9 5.7 32 392-423 49-80 (83)
74 3ra3_B P2F; coiled coil domain 46.0 17 0.00059 23.9 2.9 20 402-421 3-22 (28)
75 2zvf_A Alanyl-tRNA synthetase; 44.0 28 0.00095 30.5 5.0 37 395-431 28-64 (171)
76 3w03_C DNA repair protein XRCC 43.9 32 0.0011 32.1 5.5 32 392-423 145-176 (184)
77 1a93_B MAX protein, coiled coi 43.5 34 0.0012 23.9 4.2 23 396-418 11-33 (34)
78 3he4_B Synzip5; heterodimeric 43.5 45 0.0016 24.1 5.0 28 391-418 9-36 (46)
79 2w6b_A RHO guanine nucleotide 43.0 53 0.0018 25.3 5.6 34 396-431 14-47 (56)
80 1nkp_A C-MYC, MYC proto-oncoge 42.5 33 0.0011 27.9 4.8 19 400-418 67-85 (88)
81 2wvr_A Geminin; DNA replicatio 42.5 1.6E+02 0.0056 27.9 10.1 30 391-420 121-150 (209)
82 1gmj_A ATPase inhibitor; coile 42.2 1E+02 0.0036 25.4 7.7 11 377-387 22-32 (84)
83 1wt6_A Myotonin-protein kinase 42.2 1.3E+02 0.0043 24.8 8.1 44 379-425 14-57 (81)
84 1zxa_A CGMP-dependent protein 42.2 45 0.0016 26.4 5.3 30 389-418 22-51 (67)
85 1ci6_A Transcription factor AT 42.1 1E+02 0.0035 23.6 7.3 27 393-419 31-57 (63)
86 3w03_C DNA repair protein XRCC 42.0 56 0.0019 30.4 6.9 31 391-421 151-181 (184)
87 1wt6_A Myotonin-protein kinase 41.8 1.3E+02 0.0044 24.7 8.1 48 377-424 23-70 (81)
88 1nlw_A MAD protein, MAX dimeri 40.5 27 0.00091 28.1 3.9 23 395-417 57-79 (80)
89 2er8_A Regulatory protein Leu3 39.6 15 0.00052 27.7 2.3 22 391-412 48-69 (72)
90 2w6a_A ARF GTPase-activating p 39.2 1.1E+02 0.0038 23.9 7.0 36 395-430 23-58 (63)
91 2jee_A YIIU; FTSZ, septum, coi 39.2 80 0.0027 25.9 6.6 29 391-419 26-54 (81)
92 3cve_A Homer protein homolog 1 39.0 46 0.0016 26.7 5.0 21 398-418 6-26 (72)
93 1uii_A Geminin; human, DNA rep 38.9 1.6E+02 0.0056 24.2 8.8 19 394-412 55-73 (83)
94 1wle_A Seryl-tRNA synthetase; 38.0 1.3E+02 0.0046 31.6 9.8 34 393-426 117-150 (501)
95 2akf_A Coronin-1A; coiled coil 37.2 70 0.0024 21.8 4.8 26 396-421 3-28 (32)
96 4etp_A Kinesin-like protein KA 35.6 67 0.0023 32.7 6.9 32 393-424 18-49 (403)
97 3ljm_A Coil Ser L9C; de novo d 34.3 66 0.0023 21.6 4.3 25 395-419 4-28 (31)
98 2aze_A Transcription factor DP 34.2 91 0.0031 28.4 6.7 17 388-404 22-38 (155)
99 2z5i_A TM, general control pro 34.1 1.3E+02 0.0045 22.4 6.6 36 381-416 8-43 (52)
100 3nmd_A CGMP dependent protein 33.6 1.1E+02 0.0038 24.6 6.4 34 390-423 31-64 (72)
101 3a2a_A Voltage-gated hydrogen 33.5 1.1E+02 0.0039 23.5 6.1 34 391-424 17-50 (58)
102 4abm_A Charged multivesicular 33.4 89 0.0031 25.1 5.9 35 377-415 41-75 (79)
103 2p22_D Hypothetical 12.0 kDa p 33.4 12 0.00039 30.8 0.7 10 58-67 1-10 (79)
104 2ve7_A Kinetochore protein HEC 33.0 1.4E+02 0.0046 29.4 8.4 19 133-151 4-23 (315)
105 3a7p_A Autophagy protein 16; c 32.9 2.7E+02 0.0093 25.2 9.6 31 394-424 98-128 (152)
106 4dzn_A Coiled-coil peptide CC- 32.8 1.1E+02 0.0036 20.8 5.2 25 396-420 6-30 (33)
107 1joc_A EEA1, early endosomal a 32.4 1.3E+02 0.0043 25.8 7.2 28 394-421 13-40 (125)
108 4ati_A MITF, microphthalmia-as 32.2 26 0.00089 30.0 2.8 40 368-407 33-89 (118)
109 3he4_A Synzip6; heterodimeric 32.2 1.1E+02 0.0037 22.9 5.7 30 395-424 20-49 (56)
110 1iq3_A Ralbp1-interacting prot 31.7 29 0.00098 28.5 2.9 33 137-195 53-85 (110)
111 2zxx_A Geminin; coiled-coil, c 31.6 1.9E+02 0.0064 23.6 7.6 29 391-419 40-68 (79)
112 1ses_A Seryl-tRNA synthetase; 31.4 66 0.0023 32.9 6.1 36 391-426 63-98 (421)
113 2zqm_A Prefoldin beta subunit 31.2 1E+02 0.0035 25.1 6.2 28 396-423 81-108 (117)
114 3mq7_A Bone marrow stromal ant 31.1 1.6E+02 0.0054 25.8 7.4 25 400-424 72-96 (121)
115 3swy_A Cyclic nucleotide-gated 30.9 82 0.0028 23.3 4.8 28 396-423 2-29 (46)
116 2xv5_A Lamin-A/C; structural p 30.4 2E+02 0.007 22.8 7.8 36 386-421 6-41 (74)
117 2jws_A GA88; evolution, foldin 30.3 16 0.00055 28.2 0.9 10 138-147 35-44 (56)
118 3bas_A Myosin heavy chain, str 30.0 2.2E+02 0.0075 23.0 10.2 54 369-426 16-69 (89)
119 3m9b_A Proteasome-associated A 29.7 58 0.002 31.7 5.0 30 392-421 61-90 (251)
120 2dfs_A Myosin-5A; myosin-V, in 29.7 1.9E+02 0.0065 33.3 9.9 16 182-197 701-716 (1080)
121 2wt7_B Transcription factor MA 29.4 82 0.0028 26.2 5.2 41 385-425 30-74 (90)
122 2dq0_A Seryl-tRNA synthetase; 28.9 88 0.003 32.4 6.5 34 393-426 70-103 (455)
123 3hnw_A Uncharacterized protein 28.6 3E+02 0.01 24.1 9.6 26 394-419 77-102 (138)
124 3qne_A Seryl-tRNA synthetase, 28.5 1E+02 0.0035 32.5 7.0 33 394-426 73-105 (485)
125 3a7p_A Autophagy protein 16; c 28.1 3.4E+02 0.012 24.6 10.7 58 372-429 69-126 (152)
126 1wlq_A Geminin; coiled-coil; 2 27.7 2.6E+02 0.0088 23.1 8.2 52 366-421 23-74 (83)
127 1lwu_C Fibrinogen gamma chain; 27.4 1.4E+02 0.0049 29.8 7.5 33 391-423 25-57 (323)
128 2wt7_A Proto-oncogene protein 26.9 2.1E+02 0.007 21.7 9.7 30 392-421 30-59 (63)
129 2z15_A Protein TOB1; human TOB 26.1 46 0.0016 29.3 3.3 39 412-450 29-67 (130)
130 3m9b_A Proteasome-associated A 26.0 66 0.0022 31.4 4.6 34 391-424 53-86 (251)
131 3u06_A Protein claret segregat 26.0 1.2E+02 0.0039 31.2 6.7 30 394-423 19-48 (412)
132 4dzo_A Mitotic spindle assembl 25.8 1.3E+02 0.0044 26.0 6.0 34 393-426 5-38 (123)
133 1am9_A Srebp-1A, protein (ster 25.7 2.5E+02 0.0085 22.2 8.6 46 378-423 9-74 (82)
134 3haj_A Human pacsin2 F-BAR; pa 25.7 2.4E+02 0.0082 28.9 9.1 60 369-428 187-246 (486)
135 3s4r_A Vimentin; alpha-helix, 25.5 1.3E+02 0.0046 24.6 5.9 22 399-420 23-44 (93)
136 1uii_A Geminin; human, DNA rep 25.2 1.1E+02 0.0038 25.2 5.2 29 394-422 48-76 (83)
137 3mud_A DNA repair protein XRCC 25.2 1.5E+02 0.0053 27.4 6.7 35 383-417 133-167 (175)
138 3pjs_K KCSA, voltage-gated pot 25.1 1.1E+02 0.0039 26.8 5.7 26 390-415 136-161 (166)
139 3mq9_A Bone marrow stromal ant 25.0 1.2E+02 0.0043 30.3 6.7 34 393-426 430-463 (471)
140 3ni0_A Bone marrow stromal ant 25.0 1.6E+02 0.0055 24.9 6.2 32 388-419 56-87 (99)
141 2l5g_A GPS2 protein, G protein 24.8 1.4E+02 0.0047 21.3 4.8 25 403-427 12-36 (38)
142 3e9v_A Protein BTG2; B-cell tr 24.7 1.6E+02 0.0055 25.5 6.5 39 412-450 25-63 (120)
143 1qjt_A EH1, epidermal growth f 24.5 22 0.00075 28.5 0.9 34 137-196 42-75 (99)
144 4e61_A Protein BIM1; EB1-like 24.5 1.3E+02 0.0045 25.8 5.7 31 394-424 27-57 (106)
145 3m91_A Proteasome-associated A 24.1 2.3E+02 0.0077 21.2 6.4 27 395-421 12-38 (51)
146 4etp_A Kinesin-like protein KA 23.9 1.8E+02 0.0063 29.4 7.8 24 395-418 13-36 (403)
147 2zqm_A Prefoldin beta subunit 23.3 1.7E+02 0.0059 23.7 6.2 25 394-418 86-110 (117)
148 3aco_A Pacsin2, protein kinase 23.2 4.2E+02 0.014 25.5 9.9 57 367-423 192-248 (350)
149 3q4f_C DNA repair protein XRCC 23.1 65 0.0022 30.2 3.8 22 393-414 162-183 (186)
150 1gk7_A Vimentin; intermediate 22.9 58 0.002 23.1 2.7 18 399-416 20-37 (39)
151 1ykh_B RNA polymerase II holoe 22.6 1.6E+02 0.0055 25.6 6.1 23 399-421 92-114 (132)
152 1eh2_A EPS15; calcium binding, 22.3 34 0.0012 28.1 1.6 33 137-195 45-77 (106)
153 2v71_A Nuclear distribution pr 22.1 4.8E+02 0.016 24.2 10.0 28 394-421 90-117 (189)
154 1kd8_A GABH AIV, GCN4 acid bas 21.9 1.7E+02 0.0059 20.6 4.8 24 393-416 9-32 (36)
155 1fxk_C Protein (prefoldin); ar 21.6 1.9E+02 0.0063 24.3 6.2 28 396-423 99-126 (133)
156 1yke_B RNA polymerase II holoe 21.6 1.7E+02 0.0057 26.2 6.1 22 400-421 93-114 (151)
157 2pnv_A Small conductance calci 21.5 85 0.0029 22.8 3.4 10 396-405 20-29 (43)
158 1sv0_A ETS DNA-binding protein 21.2 32 0.0011 28.1 1.2 54 131-194 4-60 (85)
159 3efg_A Protein SLYX homolog; x 21.0 2E+02 0.0068 23.0 5.9 19 403-421 39-57 (78)
160 3lss_A Seryl-tRNA synthetase; 21.0 2.8E+02 0.0097 29.1 8.6 29 398-426 109-138 (484)
161 2dkx_A SAM pointed domain-cont 20.9 32 0.0011 28.6 1.2 50 131-194 18-74 (96)
162 2o6n_A RH4B designed peptide; 20.9 1.5E+02 0.005 20.4 4.2 25 408-432 4-28 (35)
163 1go4_E MAD1 (mitotic arrest de 20.9 1.2E+02 0.004 25.7 4.7 12 392-403 33-44 (100)
164 4dzo_A Mitotic spindle assembl 20.8 1.4E+02 0.0046 25.9 5.2 32 399-430 4-35 (123)
165 3v86_A De novo design helix; c 20.5 1.3E+02 0.0045 19.6 3.7 14 399-412 7-20 (27)
166 1fxk_A Prefoldin; archaeal pro 20.5 2.2E+02 0.0075 22.7 6.2 21 399-419 79-99 (107)
167 1g6u_A Domain swapped dimer; d 20.4 1.7E+02 0.0057 21.3 4.7 20 396-415 24-43 (48)
168 3swf_A CGMP-gated cation chann 20.4 1.1E+02 0.0036 24.8 4.1 29 395-423 3-31 (74)
169 3ra3_A P1C; coiled coil domain 20.2 69 0.0023 21.1 2.3 19 403-421 4-22 (28)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.53 E-value=6.7e-15 Score=113.15 Aligned_cols=53 Identities=32% Similarity=0.511 Sum_probs=49.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
||++||++||+||++||.|||+|+++||.+|..|+.||..|+.++..|.+.+.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999876643
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.34 E-value=3.3e-12 Score=100.23 Aligned_cols=55 Identities=33% Similarity=0.537 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 370 ERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 370 eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
|||++|+++||++|++||.||++|+.+|+.+|..|+.+|..|+.++..|..++.+
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999888654
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.24 E-value=2.2e-11 Score=94.73 Aligned_cols=54 Identities=24% Similarity=0.446 Sum_probs=51.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
||++|+++||++|++||.||++|+++||.+|..|+.+|..|+.++..|..+..+
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999888654
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.17 E-value=3.8e-11 Score=94.58 Aligned_cols=52 Identities=31% Similarity=0.410 Sum_probs=44.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 372 RQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 372 RqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
..++..+||+||+|||.||++|+.+||.+|..|+.+|..|+.+++.|.+...
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455999999999999999999999999999999999999998876543
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.13 E-value=1.1e-10 Score=91.13 Aligned_cols=53 Identities=26% Similarity=0.430 Sum_probs=49.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
|++||.++||++|++||.||++|+.+||.+|..|+.+|..|+.++..|..+..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999988754
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.88 E-value=3.9e-09 Score=82.93 Aligned_cols=54 Identities=24% Similarity=0.410 Sum_probs=45.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
|+++++.+||.+|+|||.||++++.+|+.++..|+.+|..|+.+++.|+.+...
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999988653
No 7
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.58 E-value=1.8e-07 Score=76.70 Aligned_cols=60 Identities=20% Similarity=0.327 Sum_probs=52.0
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
+|+.+++-..|..+|.++|+|||.++++...+++.++..|+.||..|+.++..|..+...
T Consensus 9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666668899999999999999999999999999999999999999999887543
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.56 E-value=2.1e-07 Score=77.69 Aligned_cols=60 Identities=20% Similarity=0.327 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
+|+.+++-..|..+|.++|+|||.++++...+++.++..|+.||..|+.+++.|..+...
T Consensus 9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677778999999999999999999999999999999999999999999988663
No 9
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.38 E-value=1.5e-08 Score=87.57 Aligned_cols=60 Identities=32% Similarity=0.408 Sum_probs=45.0
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQL-------KEENAHLKQALAEMERKKK 423 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L-------~~eN~~L~~ql~~l~~~~~ 423 (456)
..+....|.+||..|||++|++||.||.+.+++||.++..| ..||..|+.++..+..+|+
T Consensus 30 ~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e 96 (107)
T 3a5t_A 30 KEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYE 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC-
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999776654 5555555555544444443
No 10
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.29 E-value=2.8e-06 Score=68.33 Aligned_cols=57 Identities=25% Similarity=0.251 Sum_probs=46.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 372 RQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 372 RqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
..||+..||.+++..|.||++|+.+||.+|..|+.++..|..+...|......+..|
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999888777777766666655544433
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.00 E-value=3.3e-05 Score=64.88 Aligned_cols=59 Identities=29% Similarity=0.397 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
.+....|.+||-.|||..|+.||.||....++||.++..|..+-+.|+.++..+..+..
T Consensus 21 eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d 79 (90)
T 2wt7_B 21 DEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERD 79 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566889999999999999999999999999999998888888888887777765543
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=95.93 E-value=0.0094 Score=43.54 Aligned_cols=31 Identities=29% Similarity=0.568 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
|+|+.+||.++..|+..|.+|..++..|+.+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999877
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.85 E-value=0.0042 Score=52.16 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 043882 365 VEKVVERRQRRMIKNRESAARSRARKQAYTVELEA 399 (456)
Q Consensus 365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~ 399 (456)
......|..||..|||.+|++||+||.+.+++|+.
T Consensus 56 ~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 56 YQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 34456789999999999999999999999888764
No 14
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=92.09 E-value=0.7 Score=35.70 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=31.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 375 RMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQ 413 (456)
Q Consensus 375 R~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ 413 (456)
..-|||.++++||+|=+..++...+-...-.+||+.|+-
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~ 43 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRL 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 346899999999999998887777666667789998864
No 15
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=89.14 E-value=0.64 Score=32.90 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
++..||.+|+.|..+|.+|..+++.|+...
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 467899999999999999999998886653
No 16
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=88.92 E-value=0.51 Score=33.05 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
++..||.+|+.|-.+|.+|..++..|+..
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 57889999999999999999999887653
No 17
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=88.20 E-value=0.52 Score=32.84 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+..||.+|+.|-.+|.+|..++..|..-
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5679999999999999999999887653
No 18
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=85.31 E-value=1 Score=31.89 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
++..||.+|+.|..+|.+|..++..|+...
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 457899999999999999999988887654
No 19
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=85.06 E-value=0.092 Score=44.09 Aligned_cols=28 Identities=32% Similarity=0.292 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 043882 365 VEKVVERRQRRMIKNRESAARSRARKQA 392 (456)
Q Consensus 365 ~ek~~eKRqrR~ikNReSA~RSR~RKk~ 392 (456)
.....-|.+||.-|||++|++||+||.+
T Consensus 60 ~Ql~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 60 SQLALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445678999999999999999999864
No 20
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=84.97 E-value=1.1 Score=31.25 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
++..||.+|+.|-.+|.+|..+++.|+..
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 57789999999999999999998887654
No 21
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=84.24 E-value=1.6 Score=29.67 Aligned_cols=29 Identities=34% Similarity=0.488 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
+..||++|.+-+.||-.|.+++..|+.+|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 45789999999999999999999998876
No 22
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=82.63 E-value=3 Score=31.72 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKKKQQYFEELKM 432 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~~~ 432 (456)
.+.|-.+|+.|+.||..|+++++.-.........|...+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~m 43 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNM 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhH
Confidence 467889999999999999999998877776666555443
No 23
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=82.21 E-value=2.3 Score=29.57 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+..||.+|+.|-.+|.+|..+++.|+..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5689999999999999999998887654
No 24
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=82.00 E-value=6.7 Score=33.50 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALA 416 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~ 416 (456)
-..+.+|+.+|..|+.||..|+++.+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999988876544
No 25
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=81.90 E-value=1.7 Score=30.49 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
++..||.+|+.|-.+|.+|..+++.|+..
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 56789999999999999999998887653
No 26
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=81.12 E-value=15 Score=30.14 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 386 SRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 386 SR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
+=..=+..++.|+.+|..|+-.++++..+++.+.++.++.+.+
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355667788899999999999999999999999988888765
No 27
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=80.75 E-value=1.9 Score=30.16 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
++..||.+|+.|-.+|.+|..++..|+.-
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45789999999999999999988887653
No 28
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=80.51 E-value=9.7 Score=31.56 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=33.1
Q ss_pred CchhhHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 363 GPVEKVVERRQRRMIKNRESAARSRARKQ--AYTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 363 ~~~ek~~eKRqrR~ikNReSA~RSR~RKk--~y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
+..-+.+.-+.-+-++.++.++....||+ +.++.-..++..|+++...++++|.+|..
T Consensus 20 gaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 20 GAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444455555555666665556665 34444445566666666666666666654
No 29
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=80.13 E-value=2.1 Score=29.97 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
++..||.+|+.|-.+|.+|..+++.|.+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45789999999999999999998887654
No 30
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=79.31 E-value=2.5 Score=29.39 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+..||.+|+.|-.+|.+|..+++.|.+-
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5689999999999999999888877653
No 31
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=78.52 E-value=1.1 Score=38.95 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAE----------MERKKKQQYFEEL 430 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~----------l~~~~~q~~~e~~ 430 (456)
.-+++|++++.+|+.||..|++++.. |....++.++-..
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~ 56 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSS 56 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHH
Confidence 34789999999999999999999974 3445555555443
No 32
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=78.50 E-value=2 Score=34.95 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQ 413 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ 413 (456)
|+.|.+|+.++.+|+.||.-||.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577899999999999988864
No 33
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=77.95 E-value=3.8 Score=32.77 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
-+|+..|+.++..|+.+...|++++..|+.+.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888888888888888887776654
No 34
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=76.67 E-value=3.5 Score=33.22 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 369 VERRQRRMIKNRESAARSR--------------ARKQAYTVELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 369 ~eKRqrR~ikNReSA~RSR--------------~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l 418 (456)
.||+.|..|..+-.+-++- .+--+|+.+|+.++..|++++..|+.++.+.
T Consensus 13 ~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 13 IEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666666666666554432 1334788999999999999999888877654
No 35
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=76.63 E-value=4.5 Score=32.68 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 389 RKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 389 RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
+-.+||..|+.+...|..|+..|+++...|..+..
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34689999999999999999999999888877644
No 36
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=75.89 E-value=3.8 Score=30.96 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 400 ELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 400 ~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
.++.|+.||.+|+.+++.|.++..+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555443
No 37
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=75.31 E-value=2.7 Score=31.98 Aligned_cols=30 Identities=7% Similarity=0.340 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
++++.+...++.|..||.+|+.+++.|+++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578888899999999999999998887654
No 38
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.19 E-value=5.8 Score=29.00 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQAL 415 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql 415 (456)
....+||.++..|+.||.-|++-+
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 345799999999999999998755
No 39
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=74.37 E-value=11 Score=43.29 Aligned_cols=31 Identities=35% Similarity=0.490 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
+..++|+.+|..|++||..|++++.+|+...
T Consensus 1016 ~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777888888888888888888888433
No 40
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=72.14 E-value=30 Score=27.47 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
.+.+|+.....|..||..|+.++..|..+..
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888999999999999999987754
No 41
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=71.40 E-value=4.9 Score=27.05 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
.|..-+..|+.||..|+.++++|..+
T Consensus 3 qlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556678889999999988887654
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.38 E-value=27 Score=35.37 Aligned_cols=38 Identities=24% Similarity=0.108 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 386 SRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 386 SR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
-|.|.+++++...++.++|++||++|++.+.++.....
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 45556666666666677777777777766666655443
No 43
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=69.09 E-value=36 Score=28.12 Aligned_cols=68 Identities=28% Similarity=0.382 Sum_probs=45.7
Q ss_pred CCCCCCCchhhHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 357 KKRIIDGPVEKVVERRQRRMIKNRESAARSRARK---QAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 357 rk~~~~~~~ek~~eKRqrR~ikNReSA~RSR~RK---k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
+|+..+..-++--+||.|=-+.=|-|-...|.|- +..+++|+.+...|+.+...|+.++..|.....+
T Consensus 5 ~kk~~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 5 AKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp -----CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCcCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454445555677776666666655555544 4557899999999999999999999988776554
No 44
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=67.76 E-value=26 Score=35.40 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=35.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 375 RMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYF 427 (456)
Q Consensus 375 R~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~ 427 (456)
++++-|+-+.+--...++.++.|+++.+.|+.+..++..++++..++++..+.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 34444444556666667777777777777777777777777777777766543
No 45
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=66.14 E-value=15 Score=29.99 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 389 RKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 389 RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
+--+|+..|+.+...|..+...|+++...|..+..
T Consensus 49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999998888877777777777766666544
No 46
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.16 E-value=43 Score=29.56 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l 418 (456)
.|-+++..++.++..+.++++++
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l 115 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKEL 115 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 47
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=65.13 E-value=11 Score=32.05 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
.+..|..++..|+.||..|+++++.|+-+.-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888887766543
No 48
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=64.34 E-value=12 Score=26.21 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
.+..||.+|+.|-.+|..|..++..|.+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3577999999999999999888887754
No 49
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=63.86 E-value=18 Score=27.97 Aligned_cols=53 Identities=26% Similarity=0.275 Sum_probs=32.3
Q ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 364 PVEKVVERRQRRMIKNRESAARSRARK---QAYTVELEAELNQLKEENAHLKQALA 416 (456)
Q Consensus 364 ~~ek~~eKRqrR~ikNReSA~RSR~RK---k~y~eeLE~~v~~L~~eN~~L~~ql~ 416 (456)
+.|+.+.||.|=.+.-|-|-.|-..+= ...+++|+.+...|+.+...|+.++.
T Consensus 6 ~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 6 SSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666666666655555443 34567788899999999999988764
No 50
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=62.88 E-value=4.9 Score=30.23 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALA 416 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~ 416 (456)
..|++.|+.++..|+.....|+..++
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999988888876553
No 51
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=61.62 E-value=11 Score=29.02 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 398 EAELNQLKEENAHLKQALAEMERKKKQQ 425 (456)
Q Consensus 398 E~~v~~L~~eN~~L~~ql~~l~~~~~q~ 425 (456)
|.++..|++.|..|-.+++.|+..|.+.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~ 37 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEK 37 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666665543
No 52
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=60.88 E-value=12 Score=28.16 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALA 416 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~ 416 (456)
..+|..++..|++++.+|++++.
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666666666666666554
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=60.29 E-value=46 Score=34.19 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
+.|+.++..|+...++.++++.++.
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 3333444444433333333333333
No 54
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=59.25 E-value=23 Score=30.22 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQ-------ALAEMERKKKQQYFEE 429 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~-------ql~~l~~~~~q~~~e~ 429 (456)
.+||.+++.|++||..|+. ++.+|..+...+-.||
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~EN 81 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAEN 81 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 3577777777777777776 5555555544444443
No 55
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=59.15 E-value=8.7 Score=37.00 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=34.0
Q ss_pred HHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 370 ERRQRRMI-------KNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 370 eKRqrR~i-------kNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
.+|.+|.+ +=||+...-=....+..+++..++++|.+||.+|+++++.|+++..+...+
T Consensus 119 ~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te 184 (250)
T 2ve7_C 119 AKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTV 184 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 56777774 345555444455556667788888899999999999999998887664433
No 56
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=58.23 E-value=56 Score=32.81 Aligned_cols=11 Identities=36% Similarity=0.108 Sum_probs=7.5
Q ss_pred CchHHHhHHHH
Q 043882 140 KTVEEVWSEIH 150 (456)
Q Consensus 140 KTVDEVWkdI~ 150 (456)
||-||++.-..
T Consensus 141 ~Twdel~~~a~ 151 (471)
T 3mq9_A 141 KTWEEIPALDK 151 (471)
T ss_dssp SBGGGHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 68888876443
No 57
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.28 E-value=15 Score=29.66 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 388 ARKQAYTVELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 388 ~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l 418 (456)
+.|.+.+.+||.++..++.+..+|+.++..+
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3477778899999998888888888777654
No 58
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=53.94 E-value=43 Score=25.34 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 370 ERRQRRMIKNRESAARSRARK---QAYTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 370 eKRqrR~ikNReSA~RSR~RK---k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
.||.|=.+.=+.|-.|-..+- ...+++|+.+...|+.+...|+.++..|..
T Consensus 4 rrr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 4 RKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443333333333333332 334566777777777777777777766644
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.85 E-value=62 Score=33.25 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
++++.++.+.|++|..+|++++++.+++..
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 344444445555556666665555554444
No 60
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=53.67 E-value=33 Score=32.36 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 389 RKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQ 425 (456)
Q Consensus 389 RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~ 425 (456)
.-++....|..++..|+.++.+|..+++++.....+.
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~ 172 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEAL 172 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777777777777777777777665543
No 61
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=53.33 E-value=11 Score=29.99 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQ 413 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ 413 (456)
-+|+..|+.++..|+.++..|++
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666654
No 62
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=52.77 E-value=90 Score=25.17 Aligned_cols=65 Identities=26% Similarity=0.386 Sum_probs=44.0
Q ss_pred CCCCCCCchhhHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 357 KKRIIDGPVEKVVERRQRRMIKNRESAARSRARK---QAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 357 rk~~~~~~~ek~~eKRqrR~ikNReSA~RSR~RK---k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+|+..+..-++-.+||.|=-+.=|-|-...|.|- +..+++|+.+...|+.+...|..++..|...
T Consensus 5 ~kk~~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 5 AKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCcccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455445556677776666666655555554 4557899999999999999999999988654
No 63
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=52.55 E-value=31 Score=25.84 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 398 EAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 398 E~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
|.++..|++-|..|-.++.+|+..|.+..
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~e 31 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKE 31 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 56677788888888888888877776544
No 64
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=52.01 E-value=6 Score=28.12 Aligned_cols=22 Identities=23% Similarity=0.623 Sum_probs=19.0
Q ss_pred CCCcccCccccCCchHHHhHHH
Q 043882 128 QASLTLPAPLCRKTVEEVWSEI 149 (456)
Q Consensus 128 QGSlTLPrtLS~KTVDEVWkdI 149 (456)
|.-+++-++|||.|..+.|+-+
T Consensus 5 qsd~siepPLSQETFsdLW~LL 26 (39)
T 2k8f_B 5 QSDPSVEPPLSQETFSDLWKLL 26 (39)
T ss_dssp CCCSSCCCCCSCHHHHHHHHTC
T ss_pred ccccccCCCccHHHHHHHHHhC
Confidence 4457889999999999999966
No 65
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=51.55 E-value=12 Score=29.74 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAE 417 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~ 417 (456)
.|+.++..|+.+|..|+.++..
T Consensus 58 ~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 58 THQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555544443
No 66
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=51.44 E-value=1.1e+02 Score=28.20 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=32.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 371 RRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 371 KRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+....+..-=+.=+|.|.+-.+.+.+|+.++..|..|...++.++..+..+
T Consensus 69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e 119 (168)
T 3o0z_A 69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGE 119 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455567788888888888888877766666666555555444
No 67
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=51.27 E-value=0.33 Score=40.73 Aligned_cols=25 Identities=36% Similarity=0.333 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Q 043882 367 KVVERRQRRMIKNRESAARSRARKQ 391 (456)
Q Consensus 367 k~~eKRqrR~ikNReSA~RSR~RKk 391 (456)
-..-+..||.-|||++|++||+||.
T Consensus 62 l~lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 62 LALIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHHHhhhhHHHHHHcchhhc
Confidence 3456789999999999999999985
No 68
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=50.90 E-value=16 Score=26.78 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQAL 415 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql 415 (456)
+..||.+|..|+.||+.|+++.
T Consensus 5 vaqlenevaslenenetlkkkn 26 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhc
Confidence 4578999999999999998754
No 69
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=50.77 E-value=41 Score=27.59 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAE 417 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~ 417 (456)
-|+.+++.|+++|..|..+.++
T Consensus 24 lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444444
No 70
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=50.39 E-value=61 Score=28.41 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAH 410 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~ 410 (456)
+++|+.++..|..+..+
T Consensus 73 vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555544444443333
No 71
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=48.16 E-value=37 Score=36.46 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 385 RSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYF 427 (456)
Q Consensus 385 RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~ 427 (456)
.....+.+|.++||+++..|+++...-..+|..|+.-..+++.
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~ 145 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLV 145 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666677777777766655554555555555444443
No 72
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=47.26 E-value=42 Score=22.79 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
+..|..+|..|+..|-.-++++..|..+|
T Consensus 3 vqalkkrvqalkarnyaakqkvqalrhkc 31 (33)
T 1fmh_B 3 VQALKKRVQALKARNYAAKQKVQALRHKC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34577788888888888888888887766
No 73
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=46.29 E-value=38 Score=27.92 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
+.+.++|.+...|+..|..|..++.+|+..++
T Consensus 49 ~r~~e~e~r~k~le~~n~~l~~riqELE~qa~ 80 (83)
T 4ath_A 49 QRAKDLENRQKKLEHANRHLLLRVQELEMQAR 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 44556678888899999999999988876543
No 74
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=46.03 E-value=17 Score=23.91 Aligned_cols=20 Identities=45% Similarity=0.660 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043882 402 NQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 402 ~~L~~eN~~L~~ql~~l~~~ 421 (456)
..|+..|..|++++..|+-+
T Consensus 3 rrlkqknarlkqeiaaleye 22 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYE 22 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHH
Confidence 35666666666666666544
No 75
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=44.04 E-value=28 Score=30.48 Aligned_cols=37 Identities=11% Similarity=0.181 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERKKKQQYFEELK 431 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~~ 431 (456)
++|..+++.|.+|+.+|+++++.|+.+......+.+.
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~ 64 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILM 64 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888889999999999999888876665555553
No 76
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=43.95 E-value=32 Score=32.09 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
+++..|=..+..|+++|..|.++.+.|..++.
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555544433
No 77
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=43.51 E-value=34 Score=23.94 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l 418 (456)
.....+..|+..|..|..++..|
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 44566677777777777666543
No 78
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=43.50 E-value=45 Score=24.10 Aligned_cols=28 Identities=43% Similarity=0.509 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l 418 (456)
|-|+.+||++...|+.-.+.|+-.-.+|
T Consensus 9 knyiqeleernaelknlkehlkfakael 36 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLKFAKAEL 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHH
Confidence 5688888887777766655555443333
No 79
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=42.97 E-value=53 Score=25.25 Aligned_cols=34 Identities=32% Similarity=0.627 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043882 396 ELEAELNQLKEENAHLKQALAEMERKKKQQYFEELK 431 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~~ 431 (456)
.|..+|..|+.||..|++-+++=++.++. +|.+.
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~--LE~~v 47 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKD--LEKLV 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 56778888888998888888776555554 44443
No 80
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=42.53 E-value=33 Score=27.93 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043882 400 ELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 400 ~v~~L~~eN~~L~~ql~~l 418 (456)
++..|+.+|..|+.+++.|
T Consensus 67 ~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 67 EEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444443
No 81
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=42.48 E-value=1.6e+02 Score=27.90 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
...++.|+.++..|++||.+|+.-++.++.
T Consensus 121 h~~ie~l~eEi~~LkeEn~eLkeLae~~q~ 150 (209)
T 2wvr_A 121 HKEIEQKDNEIARLKKENKELAEVAEHVQY 150 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777888888888888888766555543
No 82
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=42.22 E-value=1e+02 Score=25.40 Aligned_cols=11 Identities=36% Similarity=0.513 Sum_probs=6.5
Q ss_pred HHhhHHHHHHH
Q 043882 377 IKNRESAARSR 387 (456)
Q Consensus 377 ikNReSA~RSR 387 (456)
-.-||+|+.-+
T Consensus 22 FgKrEaA~Ee~ 32 (84)
T 1gmj_A 22 FGKREQAEEER 32 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred cccHHHHhHHH
Confidence 34466676665
No 83
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=42.16 E-value=1.3e+02 Score=24.78 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 379 NRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQ 425 (456)
Q Consensus 379 NReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~ 425 (456)
|=.||-.+-.|-|+ .+.+++...+..|..+..+|.+.+.+++..
T Consensus 14 eLQSALeaEIqAKQ---~i~EELs~vr~~ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 14 ELQEALEEEVLTRQ---SLSREMEAIRTDNQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555443 334445555555555555555555554443
No 84
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=42.15 E-value=45 Score=26.43 Aligned_cols=30 Identities=33% Similarity=0.356 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 389 RKQAYTVELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 389 RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l 418 (456)
.|.+.+.+||..+..=..|+.+|+.++..+
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388889999999888888888888766654
No 85
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.13 E-value=1e+02 Score=23.56 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
.+++|+.+...|+.+...|+.++..|.
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666553
No 86
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=42.03 E-value=56 Score=30.43 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
-..+.+|++++.+|+++|++|+++...+.++
T Consensus 151 ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 151 LDTIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446789999999999999999999887665
No 87
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=41.77 E-value=1.3e+02 Score=24.74 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=32.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 377 IKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 377 ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
|+.+.+-++-=.+=+.-...++.++...+..|.+|..+++.++++..+
T Consensus 23 IqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 23 VLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455444445556666777888888888888888877777665443
No 88
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=40.46 E-value=27 Score=28.10 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAE 417 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~ 417 (456)
..|+.+...|+.+|..|+++++.
T Consensus 57 ~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 57 RKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566666666666666654
No 89
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=39.62 E-value=15 Score=27.71 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLK 412 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~ 412 (456)
+.|+++||.+|..|+.....|.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3788888888888877666553
No 90
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=39.24 E-value=1.1e+02 Score=23.90 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERKKKQQYFEEL 430 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~ 430 (456)
.--|+++.+|..-|..|..++..++.+.+..--||.
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~ 58 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhh
Confidence 344778888888888888888888777776666654
No 91
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=39.22 E-value=80 Score=25.88 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
|..+++|..+...|..+|.+++...+.|.
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~ 54 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44556666666665555555444333333
No 92
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=38.99 E-value=46 Score=26.71 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043882 398 EAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 398 E~~v~~L~~eN~~L~~ql~~l 418 (456)
..++..++.+|..|+.++..+
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~l 26 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEM 26 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 333444444444444444433
No 93
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=38.88 E-value=1.6e+02 Score=24.21 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLK 412 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~ 412 (456)
++.|+.++..|+.+|.+|+
T Consensus 55 ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 55 IEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 94
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=37.97 E-value=1.3e+02 Score=31.57 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
..++|-.++..|+++...|..++.+++++..+.+
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l 150 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777766655543
No 95
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=37.24 E-value=70 Score=21.81 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
.||+++..|..--.+|.+++..|++.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777766654
No 96
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.62 E-value=67 Score=32.71 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
.+++|+.+++.|+.++.+|+.++...+..+++
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~ 49 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKELNEILIKEETVRRT 49 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666555544443
No 97
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=34.32 E-value=66 Score=21.58 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
+.||.+...|+.....|.++++.|+
T Consensus 4 ealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776666654
No 98
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=34.17 E-value=91 Score=28.39 Aligned_cols=17 Identities=24% Similarity=0.128 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043882 388 ARKQAYTVELEAELNQL 404 (456)
Q Consensus 388 ~RKk~y~eeLE~~v~~L 404 (456)
++|++|+.+|..+...|
T Consensus 22 ~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 22 KQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67999999999876554
No 99
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=34.09 E-value=1.3e+02 Score=22.36 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 381 ESAARSRARKQAYTVELEAELNQLKEENAHLKQALA 416 (456)
Q Consensus 381 eSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~ 416 (456)
|-|-||=.|-+..++.||.++..-++++..+...+.
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455566666666666666666555555555544433
No 100
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=33.57 E-value=1.1e+02 Score=24.58 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 390 KQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 390 Kk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
|-+.+...+..+..|+.+..+....+.+|..++.
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666666655555543
No 101
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=33.49 E-value=1.1e+02 Score=23.49 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
|+.-..|-++|.+|+..+.+..++++.|....++
T Consensus 17 Kq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkq 50 (58)
T 3a2a_A 17 KQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQ 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444678888888888888888888877666554
No 102
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=33.37 E-value=89 Score=25.10 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=18.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 377 IKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQAL 415 (456)
Q Consensus 377 ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql 415 (456)
-+|+..|..+=+|||-| |..+.++......|..++
T Consensus 41 ~knK~~Al~aLkrKK~~----E~qL~q~~~ql~~LE~q~ 75 (79)
T 4abm_A 41 TKNKRAALQALKRKKRY----EKQLAQIDGTLSTIEFQR 75 (79)
T ss_dssp TSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHH
Confidence 45666677776777765 333444444444444433
No 103
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=33.36 E-value=12 Score=30.79 Aligned_cols=10 Identities=50% Similarity=0.853 Sum_probs=7.2
Q ss_pred CchHHHHhcc
Q 043882 58 MNMDEFLTSI 67 (456)
Q Consensus 58 MNMDElLknI 67 (456)
|||||+|++|
T Consensus 1 ~~~e~~Lr~I 10 (79)
T 2p22_D 1 MNVEELLRRI 10 (79)
T ss_dssp CHHHHHHHHS
T ss_pred CCHHHHHhcC
Confidence 6777777776
No 104
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=32.98 E-value=1.4e+02 Score=29.45 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=14.6
Q ss_pred cCccccCC-chHHHhHHHHh
Q 043882 133 LPAPLCRK-TVEEVWSEIHR 151 (456)
Q Consensus 133 LPrtLS~K-TVDEVWkdI~k 151 (456)
=||||+-| .+-+-++.|..
T Consensus 4 DpRpl~Dk~~q~~~~~~i~~ 23 (315)
T 2ve7_A 4 DPRPLNDKAFIQQCIRQLCE 23 (315)
T ss_dssp CCSCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 38888877 77788887775
No 105
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=32.94 E-value=2.7e+02 Score=25.23 Aligned_cols=31 Identities=32% Similarity=0.374 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
++.|..++..|..++..+..++..|+++.++
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666666666655443
No 106
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=32.83 E-value=1.1e+02 Score=20.85 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
.|..++..|+.|...|+-++..|++
T Consensus 6 alkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555555555555555555443
No 107
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=32.43 E-value=1.3e+02 Score=25.80 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
....|.+++.|+.++.+|+++++.....
T Consensus 13 ~~~~e~e~~~l~~~~~el~~~l~~~~~~ 40 (125)
T 1joc_A 13 CLKGEGEIEKLQTKVLELQRKLDNTTAA 40 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777766655444
No 108
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=32.20 E-value=26 Score=30.03 Aligned_cols=40 Identities=25% Similarity=0.333 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Q 043882 368 VVERRQRRMIKNRESAARSR-----------------ARKQAYTVELEAELNQLKEE 407 (456)
Q Consensus 368 ~~eKRqrR~ikNReSA~RSR-----------------~RKk~y~eeLE~~v~~L~~e 407 (456)
..|||.|-.|..+-.+-++= .+--+|+..|+.++..|+++
T Consensus 33 ~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 33 LIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888887775542 12346888887777766544
No 109
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=32.17 E-value=1.1e+02 Score=22.89 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
..||.-|..|+..|..|.+.+..|++...+
T Consensus 20 aklenivarlendnanlekdianlekdian 49 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIAN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 356777888999999999998888877655
No 110
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=31.74 E-value=29 Score=28.52 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=23.6
Q ss_pred ccCCchHHHhHHHHhcCCCCCCCCCCCCCCCCCCcccccCCCCcccccHHHHHHHhhcc
Q 043882 137 LCRKTVEEVWSEIHRGKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAGVV 195 (456)
Q Consensus 137 LS~KTVDEVWkdI~k~~~~~~~~~~~~~~~~~~~~~~~~RQ~TLGEMTLEDFLVrAGVV 195 (456)
|+...++++|+++-.+.. |.++++||+.---.+
T Consensus 53 l~~~el~~i~~~~D~d~d--------------------------G~I~~~EF~~~m~~~ 85 (110)
T 1iq3_A 53 LSIPELSYIWELSDADCD--------------------------GALTLPEFCAAFHLI 85 (110)
T ss_dssp CSSCCHHHHHHHHCSSSC--------------------------SEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCC--------------------------CcCcHHHHHHHHHHH
Confidence 567899999998733321 679999998754444
No 111
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=31.64 E-value=1.9e+02 Score=23.60 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
...++.+..++..|++||..|+.-+...+
T Consensus 40 h~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 40 HKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888887765554443
No 112
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=31.36 E-value=66 Score=32.88 Aligned_cols=36 Identities=28% Similarity=0.219 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
++..++|-.++..|+++...|..++.+++++..+.+
T Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 63 PEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777788888888888888887777765544
No 113
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=31.21 E-value=1e+02 Score=25.10 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
.|+.++..|+..-..+..++.+++....
T Consensus 81 ~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 81 TLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555554433
No 114
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=31.11 E-value=1.6e+02 Score=25.83 Aligned_cols=25 Identities=16% Similarity=0.326 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 400 ELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 400 ~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
+|+.|+.|+..|.++|.++..+..+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~er 96 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVER 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665554443
No 115
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=30.93 E-value=82 Score=23.26 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
+||++|..|+.-.+.|..+++.|..++.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ 29 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYN 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 116
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=30.42 E-value=2e+02 Score=22.79 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 386 SRARKQAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 386 SR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
-|...+..+..||.++.+++.+-....++..+|..-
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Llni 41 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDI 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666665555555554444444
No 117
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=30.28 E-value=16 Score=28.19 Aligned_cols=10 Identities=60% Similarity=0.953 Sum_probs=8.5
Q ss_pred cCCchHHHhH
Q 043882 138 CRKTVEEVWS 147 (456)
Q Consensus 138 S~KTVDEVWk 147 (456)
-.||||+||.
T Consensus 35 nakTVeGV~a 44 (56)
T 2jws_A 35 NAKTVEGVWT 44 (56)
T ss_dssp TCSCHHHHHH
T ss_pred cccccccccc
Confidence 4699999995
No 118
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=29.95 E-value=2.2e+02 Score=22.97 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 369 VERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 369 ~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
..++..-+.+-++...++...++ +|+.+...|..+...|..++.++..+|...+
T Consensus 16 m~~~eeel~~lke~l~k~e~~rk----ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~ 69 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKK----ELEEQNVTLLEQKNDLFGSMKQLEDKVEELL 69 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34445555555565655555554 6788888888888888888888777776554
No 119
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.72 E-value=58 Score=31.75 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
..+..|+.+.+.|+++..++++++..|+++
T Consensus 61 ~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 61 ARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 120
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.67 E-value=1.9e+02 Score=33.26 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=13.0
Q ss_pred cccHHHHHHHhhcccc
Q 043882 182 EMTLEDFLIKAGVVRE 197 (456)
Q Consensus 182 EMTLEDFLVrAGVVrE 197 (456)
-|+.+||+-|=.+...
T Consensus 701 R~~~~eF~~RY~~L~~ 716 (1080)
T 2dfs_A 701 RWTYQEFFSRYRVLMK 716 (1080)
T ss_dssp EEEHHHHHHHHTTTSC
T ss_pred hhhHHHHHHHHHHHCC
Confidence 5889999999888754
No 121
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=29.38 E-value=82 Score=26.23 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 385 RSRARKQAYTVELEA----ELNQLKEENAHLKQALAEMERKKKQQ 425 (456)
Q Consensus 385 RSR~RKk~y~eeLE~----~v~~L~~eN~~L~~ql~~l~~~~~q~ 425 (456)
|-|.+-+-|...=.. +...|+.++..|..+++.|.++..+.
T Consensus 30 RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 30 RRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555543332 23457888888888888777765543
No 122
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=28.90 E-value=88 Score=32.39 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
..++|-.++..|+++...|..++.+++++..+.+
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777776665543
No 123
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.65 E-value=3e+02 Score=24.10 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
.+.|+.++..++.|...|+.++..+.
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~ 102 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQ 102 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333
No 124
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.54 E-value=1e+02 Score=32.49 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
.++|-.++..|+++...|..++.+++++..+.+
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777666544
No 125
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=28.08 E-value=3.4e+02 Score=24.58 Aligned_cols=58 Identities=10% Similarity=-0.030 Sum_probs=29.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 372 RQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFEE 429 (456)
Q Consensus 372 RqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~ 429 (456)
..+.+.+-+.+..+.=...++.+.+-.+-++.|..|...|.-++..++.+.+..--||
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333333333333333333334455666777777777777766666555544
No 126
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=27.74 E-value=2.6e+02 Score=23.06 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 366 EKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 366 ek~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+...++|++-+ .-|-.--.+=.+.++.++.++..|+++|.+|+.-....+..
T Consensus 23 k~lAE~Rr~AL----~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~l 74 (83)
T 1wlq_A 23 KEVAEQRRKAL----YEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYM 74 (83)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 127
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.43 E-value=1.4e+02 Score=29.80 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
.+.+..|+.+++.++....+|+.+|.+|+..+.
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666666666666655544
No 128
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.93 E-value=2.1e+02 Score=21.67 Aligned_cols=30 Identities=33% Similarity=0.267 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 392 ~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
..++.|+.+...|+.+...|+.++..|...
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777888888887777777654
No 129
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=26.14 E-value=46 Score=29.27 Aligned_cols=39 Identities=5% Similarity=0.058 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhHHHhhhhhccccc
Q 043882 412 KQALAEMERKKKQQYFEELKMKPYTKAQKAKEKLRIMRR 450 (456)
Q Consensus 412 ~~ql~~l~~~~~q~~~e~~~~~~~~~~~k~~~K~~~LRR 450 (456)
++++..+.++..+.+.+..+..|.|..|.++..-||+|=
T Consensus 29 ~~~v~~F~~~L~~~L~~~y~~HWyP~~P~kGs~yRcI~i 67 (130)
T 2z15_A 29 RRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHI 67 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCTTCTTTTHHHHCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccceeEEEE
Confidence 344666666667777788888999999988999999984
No 130
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.01 E-value=66 Score=31.38 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 391 QAYTVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 391 k~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
...+.+|+.++..|...|+.|+..+.+++++...
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~ 86 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLA 86 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999999999988888877654
No 131
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.98 E-value=1.2e+02 Score=31.17 Aligned_cols=30 Identities=27% Similarity=0.138 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
.++|+++.++++.++.++++++.+.+.+++
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr 48 (412)
T 3u06_A 19 TEELLRCNEQQAAELETCKEQLFQSNMERK 48 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666655444444
No 132
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=25.80 E-value=1.3e+02 Score=26.04 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
.+.+|+.+++.++..|.+|++-......+..+.+
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav 38 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVFQTKIQEFRKAC 38 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777666555555555444
No 133
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=25.74 E-value=2.5e+02 Score=22.21 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=25.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHH
Q 043882 378 KNRESAARSRARKQAYTVELEAELN--------------------QLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 378 kNReSA~RSR~RKk~y~eeLE~~v~--------------------~L~~eN~~L~~ql~~l~~~~~ 423 (456)
..-.+-++-|.+=...+.+|..-|. .|+.++..|..++..|....+
T Consensus 9 ~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 9 AHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555777788877653 355555555555555554433
No 134
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=25.72 E-value=2.4e+02 Score=28.86 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 369 VERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKKQQYFE 428 (456)
Q Consensus 369 ~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e 428 (456)
.+|.+.+..+-+..|..++..=+..+..+...-.....+-..+-..+++|++++-..+-+
T Consensus 187 ~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~ 246 (486)
T 3haj_A 187 LKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFRE 246 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544444444454443445555555555566666555544433
No 135
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.54 E-value=1.3e+02 Score=24.61 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043882 399 AELNQLKEENAHLKQALAEMER 420 (456)
Q Consensus 399 ~~v~~L~~eN~~L~~ql~~l~~ 420 (456)
.+|..|+.+|..|..++..+..
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666555555543
No 136
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.25 E-value=1.1e+02 Score=25.20 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKK 422 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~ 422 (456)
-+.|-.++..|++|+..|+..+.+|....
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888888888776543
No 137
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=25.19 E-value=1.5e+02 Score=27.37 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 383 AARSRARKQAYTVELEAELNQLKEENAHLKQALAE 417 (456)
Q Consensus 383 A~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~ 417 (456)
|-|+-.+.++.++.||.++...++++..+.+.+..
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777777777777776665543
No 138
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=25.13 E-value=1.1e+02 Score=26.78 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 390 KQAYTVELEAELNQLKEENAHLKQAL 415 (456)
Q Consensus 390 Kk~y~eeLE~~v~~L~~eN~~L~~ql 415 (456)
.++..+.++.+++.|.++.++|++++
T Consensus 136 ~~~~~~~l~~~i~~L~~~l~~le~~~ 161 (166)
T 3pjs_K 136 EKAAEEAYTRTTRALHERFDRLERML 161 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666665555555443
No 139
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.02 E-value=1.2e+02 Score=30.25 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
..+.||++|.+-+...++|..++.+|.++.+++.
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 430 LMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777666666666666666666655543
No 140
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=24.99 E-value=1.6e+02 Score=24.92 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 388 ARKQAYTVELEAELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 388 ~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~ 419 (456)
.++|++-.+-.++|+.|+.|...|..+|.++.
T Consensus 56 ~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 56 EKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433334445555555555555444443
No 141
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.80 E-value=1.4e+02 Score=21.35 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 403 QLKEENAHLKQALAEMERKKKQQYF 427 (456)
Q Consensus 403 ~L~~eN~~L~~ql~~l~~~~~q~~~ 427 (456)
.-+++...|+.+++.|.++..+..+
T Consensus 12 EtkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 12 ETKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666667666666544
No 142
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=24.74 E-value=1.6e+02 Score=25.46 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhHHHhhhhhccccc
Q 043882 412 KQALAEMERKKKQQYFEELKMKPYTKAQKAKEKLRIMRR 450 (456)
Q Consensus 412 ~~ql~~l~~~~~q~~~e~~~~~~~~~~~k~~~K~~~LRR 450 (456)
+++++.+.++..+.+.+..+..|.|..|.++..-||+|=
T Consensus 25 ~~~v~~F~~~L~~~L~~~y~~HW~P~~P~kGsayRcIri 63 (120)
T 3e9v_A 25 EQRLKVFSGALQEALTEHYKHHWFPEKPSKGSGYRCIRI 63 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCTTSTTTTHHHHCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCceeEEEE
Confidence 345777778888888899999999999988999999984
No 143
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=24.50 E-value=22 Score=28.49 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=23.9
Q ss_pred ccCCchHHHhHHHHhcCCCCCCCCCCCCCCCCCCcccccCCCCcccccHHHHHHHhhccc
Q 043882 137 LCRKTVEEVWSEIHRGKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAGVVR 196 (456)
Q Consensus 137 LS~KTVDEVWkdI~k~~~~~~~~~~~~~~~~~~~~~~~~RQ~TLGEMTLEDFLVrAGVVr 196 (456)
|+..+++++|+.+-.+.. |.++.+||+.--..+.
T Consensus 42 l~~~~l~~i~~~~D~d~d--------------------------G~i~~~EF~~~~~~~~ 75 (99)
T 1qjt_A 42 LPDLILGKIWDLADTDGK--------------------------GVLSKQEFFVALRLVA 75 (99)
T ss_dssp SCHHHHHHHHHHHCCSSS--------------------------SSCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCC--------------------------CcCCHHHHHHHHHHHH
Confidence 457789999997733321 6789999987665553
No 144
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=24.50 E-value=1.3e+02 Score=25.77 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERKKKQ 424 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~q 424 (456)
+.+|...+..|++|-.-.-.+|..++--|++
T Consensus 27 i~eLk~~ve~lEkERDFYF~KLRdIEiLcQe 57 (106)
T 4e61_A 27 IEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555544444
No 145
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.14 E-value=2.3e+02 Score=21.20 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
.+|..++..|...|.+|..-+.....+
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~e 38 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQ 38 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666665555554444
No 146
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.90 E-value=1.8e+02 Score=29.44 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l 418 (456)
++|+++++.|+++.++|+.++.++
T Consensus 13 ~~l~~~~~~l~~~~~~~~~~~~~~ 36 (403)
T 4etp_A 13 AALKEKIAALKEKIKDTELGMKEL 36 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 147
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.30 E-value=1.7e+02 Score=23.68 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEM 418 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l 418 (456)
+..|+.+...++.+..+|+.++..+
T Consensus 86 i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 86 LNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 148
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=23.16 E-value=4.2e+02 Score=25.50 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 367 KVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 367 k~~eKRqrR~ikNReSA~RSR~RKk~y~eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
+..+|.+.++.+-+..+..++..=+..+..|......++++-..+-..++.+++++-
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl 248 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRL 248 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666677777777777776554444454444434444444444444455544443
No 149
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=23.15 E-value=65 Score=30.16 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQA 414 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~q 414 (456)
.+.+|+++..+|++||++|.++
T Consensus 162 ~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 162 TIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 150
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=22.92 E-value=58 Score=23.09 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043882 399 AELNQLKEENAHLKQALA 416 (456)
Q Consensus 399 ~~v~~L~~eN~~L~~ql~ 416 (456)
.+|..|+.+|..|..++.
T Consensus 20 dkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567888889988887764
No 151
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.63 E-value=1.6e+02 Score=25.57 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043882 399 AELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 399 ~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+++..|++||....+++.+..++
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e 114 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKK 114 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444
No 152
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=22.34 E-value=34 Score=28.06 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=23.3
Q ss_pred ccCCchHHHhHHHHhcCCCCCCCCCCCCCCCCCCcccccCCCCcccccHHHHHHHhhcc
Q 043882 137 LCRKTVEEVWSEIHRGKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAGVV 195 (456)
Q Consensus 137 LS~KTVDEVWkdI~k~~~~~~~~~~~~~~~~~~~~~~~~RQ~TLGEMTLEDFLVrAGVV 195 (456)
|+...++++|+.+-.+.. |.++.|||++---.+
T Consensus 45 l~~~el~~i~~~~D~d~d--------------------------G~id~~EF~~~m~~~ 77 (106)
T 1eh2_A 45 LPVDILGRVWELSDIDHD--------------------------GMLDRDEFAVAMFLV 77 (106)
T ss_dssp CCHHHHHHHHHHHCSSCS--------------------------SBCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCC--------------------------CcCcHHHHHHHHHHH
Confidence 557789999997633322 579999998765444
No 153
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.09 E-value=4.8e+02 Score=24.23 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 394 TVELEAELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 394 ~eeLE~~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
+..|+.++..|+.++..|+.+|.+|+..
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777777777776666554
No 154
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=21.94 E-value=1.7e+02 Score=20.64 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 393 YTVELEAELNQLKEENAHLKQALA 416 (456)
Q Consensus 393 y~eeLE~~v~~L~~eN~~L~~ql~ 416 (456)
.+++|..+...|+.|-.+|+.-+.
T Consensus 9 kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 9 EVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc
Confidence 345666666666666666655444
No 155
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.60 E-value=1.9e+02 Score=24.35 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
.|+..+..|++....++.++..+.+...
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555544433
No 156
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.56 E-value=1.7e+02 Score=26.18 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043882 400 ELNQLKEENAHLKQALAEMERK 421 (456)
Q Consensus 400 ~v~~L~~eN~~L~~ql~~l~~~ 421 (456)
++..|++||.+..+++.+..++
T Consensus 93 ri~~Le~E~~~~~~el~~~v~e 114 (151)
T 1yke_B 93 KIDMLQKKLVEVEDEKIEAIKK 114 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444443
No 157
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=21.47 E-value=85 Score=22.85 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 043882 396 ELEAELNQLK 405 (456)
Q Consensus 396 eLE~~v~~L~ 405 (456)
+||+++..|+
T Consensus 20 ~LE~Ri~~LE 29 (43)
T 2pnv_A 20 DFEKRIVTLE 29 (43)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 158
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=21.19 E-value=32 Score=28.07 Aligned_cols=54 Identities=13% Similarity=-0.057 Sum_probs=31.5
Q ss_pred cccCccccCCchHHHhHHHHh---cCCCCCCCCCCCCCCCCCCcccccCCCCcccccHHHHHHHhhc
Q 043882 131 LTLPAPLCRKTVEEVWSEIHR---GKQGGHQQNSSNNNNNVRNPEAASRQPTFGEMTLEDFLIKAGV 194 (456)
Q Consensus 131 lTLPrtLS~KTVDEVWkdI~k---~~~~~~~~~~~~~~~~~~~~~~~~RQ~TLGEMTLEDFLVrAGV 194 (456)
+.||..-..=|.+.|+.=|.= +-.- ..+.-....---..|=.||.|||+.||+.
T Consensus 4 ~~ip~DP~~Ws~~~V~~WL~W~~~ef~L----------~~i~~~~F~m~G~~LC~ls~edF~~~~p~ 60 (85)
T 1sv0_A 4 PSLPSDPRLWSREDVLVFLRFCVREFDL----------PKLDFDLFQMNGKRLCLLTRADFGHRCPG 60 (85)
T ss_dssp TTSCSSGGGCCHHHHHHHHHHHHHHTTC----------CCCCGGGGCSCHHHHTTCCHHHHHHHSTT
T ss_pred CCCCCChhhCCHHHHHHHHHHHHHccCC----------CCCChhhCCCCHHHHHcCCHHHHHHHcCC
Confidence 457777778888999875552 2210 01110000001225778999999999984
No 159
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.05 E-value=2e+02 Score=22.99 Aligned_cols=19 Identities=5% Similarity=0.064 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043882 403 QLKEENAHLKQALAEMERK 421 (456)
Q Consensus 403 ~L~~eN~~L~~ql~~l~~~ 421 (456)
....+...|++++..|.++
T Consensus 39 ~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 39 DARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 160
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=20.96 E-value=2.8e+02 Score=29.09 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=18.1
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 398 EAE-LNQLKEENAHLKQALAEMERKKKQQY 426 (456)
Q Consensus 398 E~~-v~~L~~eN~~L~~ql~~l~~~~~q~~ 426 (456)
-++ +..|+++...|..++.+++++..+.+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l 138 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLM 138 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 66666666677666666666655433
No 161
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.92 E-value=32 Score=28.62 Aligned_cols=50 Identities=14% Similarity=0.029 Sum_probs=29.7
Q ss_pred cccCccccCCchHHHhHHHH---hcCCCCCCCCCCCCCCCCCCcccccCCC----CcccccHHHHHHHhhc
Q 043882 131 LTLPAPLCRKTVEEVWSEIH---RGKQGGHQQNSSNNNNNVRNPEAASRQP----TFGEMTLEDFLIKAGV 194 (456)
Q Consensus 131 lTLPrtLS~KTVDEVWkdI~---k~~~~~~~~~~~~~~~~~~~~~~~~RQ~----TLGEMTLEDFLVrAGV 194 (456)
|-||..-..=|.+.|+.=|. ++-.- .... ..+++ .|=.||.|||+.||+.
T Consensus 18 l~ip~DP~~Ws~~~V~~WL~W~~~ef~L-------------~~i~-~~~f~m~G~~LC~lskedF~~~~p~ 74 (96)
T 2dkx_A 18 LNITADPMDWSPSNVQKWLLWTEHQYRL-------------PPMG-KAFQELAGKELCAMSEEQFRQRSPL 74 (96)
T ss_dssp TTCCSCGGGCCSSTHHHHHHHHHHHTTC-------------CCCH-HHHSSCCHHHHHHSCHHHHHHHCSS
T ss_pred cCCCCChhhCCHHHHHHHHHHHHHhcCC-------------CCCC-cccCCCCHHHHHhCCHHHHHHHcCc
Confidence 45666666677777765443 22221 1111 12333 4668999999999984
No 162
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=20.90 E-value=1.5e+02 Score=20.39 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 043882 408 NAHLKQALAEMERKKKQQYFEELKM 432 (456)
Q Consensus 408 N~~L~~ql~~l~~~~~q~~~e~~~~ 432 (456)
.+.-++++.-|.++.++.++|.++.
T Consensus 4 ieqakkeiaylikkakeeileeikk 28 (35)
T 2o6n_A 4 IEQAKKEIAYLIKKAKEEILEEIKK 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777788888887764
No 163
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.85 E-value=1.2e+02 Score=25.74 Aligned_cols=12 Identities=33% Similarity=0.321 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 043882 392 AYTVELEAELNQ 403 (456)
Q Consensus 392 ~y~eeLE~~v~~ 403 (456)
+.++.||.++.+
T Consensus 33 ~~~~~LE~~Le~ 44 (100)
T 1go4_E 33 EEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333445554443
No 164
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=20.77 E-value=1.4e+02 Score=25.90 Aligned_cols=32 Identities=13% Similarity=0.064 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 399 AELNQLKEENAHLKQALAEMERKKKQQYFEEL 430 (456)
Q Consensus 399 ~~v~~L~~eN~~L~~ql~~l~~~~~q~~~e~~ 430 (456)
.++..|+.+.+.+.++...|++-.++++.|..
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFR 35 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFR 35 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999988888888888877754
No 165
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=20.55 E-value=1.3e+02 Score=19.60 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 043882 399 AELNQLKEENAHLK 412 (456)
Q Consensus 399 ~~v~~L~~eN~~L~ 412 (456)
.+|-.|+-|-..|+
T Consensus 7 devgelkgevralk 20 (27)
T 3v86_A 7 DEVGELKGEVRALK 20 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHH
Confidence 33333333333333
No 166
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.51 E-value=2.2e+02 Score=22.72 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043882 399 AELNQLKEENAHLKQALAEME 419 (456)
Q Consensus 399 ~~v~~L~~eN~~L~~ql~~l~ 419 (456)
.+++.|+..-..+..++.+++
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 167
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.43 E-value=1.7e+02 Score=21.34 Aligned_cols=20 Identities=45% Similarity=0.567 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043882 396 ELEAELNQLKEENAHLKQAL 415 (456)
Q Consensus 396 eLE~~v~~L~~eN~~L~~ql 415 (456)
.||.++..|+.....|+.++
T Consensus 24 aleselqalekklaalkskl 43 (48)
T 1g6u_A 24 ALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 168
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.35 E-value=1.1e+02 Score=24.81 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043882 395 VELEAELNQLKEENAHLKQALAEMERKKK 423 (456)
Q Consensus 395 eeLE~~v~~L~~eN~~L~~ql~~l~~~~~ 423 (456)
++||++|.+|+.-...|+.+++.|..++.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ 31 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYE 31 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 169
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.15 E-value=69 Score=21.08 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043882 403 QLKEENAHLKQALAEMERK 421 (456)
Q Consensus 403 ~L~~eN~~L~~ql~~l~~~ 421 (456)
.|+-||..|.+++..|+++
T Consensus 4 alefendaleqkiaalkqk 22 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQK 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHH
Confidence 4556666666666665544
Done!