BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043883
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 253 bits (645), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 134/227 (59%), Positives = 155/227 (68%), Gaps = 11/227 (4%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCATND 175
VP SV+W +KGAVT VK QGQC + AVEGIN IK N+LVSLSEQ+LVDC T D
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDT-D 60
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
N GC GG MD AF++I Q GIT +A Y YE G CD K A I +E+VP N
Sbjct: 61 QNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYD-GTCDVSKENAPAVSIDGHENVPEN 119
Query: 236 DEESLLKAVANQPVSVAIDA--SALQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
DE +LLKAVANQPVSVAIDA S QFYS GVF G C T L+HGV VGYGT+ +G KYW
Sbjct: 120 DENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYW 179
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPVSKESAQPS 340
+KNSWG +WGE GY R++R I +G CGIAM AS+P+ K S PS
Sbjct: 180 TVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKKSSNNPS 226
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 126/254 (49%), Positives = 160/254 (62%), Gaps = 29/254 (11%)
Query: 121 SQVPPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCAT 173
S +PPSV+W +KGAVT VK QG+C V +VEGINAI+ LVSLSEQ+L+DC T
Sbjct: 2 SDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDT 61
Query: 174 NDNNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHA---AQITNYE 230
DN+ GC GG MD+AF+YI N G+ +A Y Y + G C+ +A ++ I ++
Sbjct: 62 ADND-GCQGGLMDNAFEYIKNNGGLITEAAYPYR-AARGTCNVARAAQNSPVVVHIDGHQ 119
Query: 231 DVPPNDEESLLKAVANQPVSVAIDAS--ALQFYSGGVFNGYCETFLNHGVTAVGYGTSEE 288
DVP N EE L +AVANQPVSVA++AS A FYS GVF G C T L+HGV VGYG +E+
Sbjct: 120 DVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAED 179
Query: 289 GIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV---------------S 333
G YW +KNSWG WGE GY R+++D G CGIAM AS+PV +
Sbjct: 180 GKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVKTYSKPKPTPRRALGA 239
Query: 334 KESAQPSSADKSSA 347
+ES SS DK +A
Sbjct: 240 RESLNSSSVDKLAA 253
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 145/221 (65%), Gaps = 14/221 (6%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P S++W E GAV PVK QG C VAAVEGIN I L+SLSEQQLVDC T
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA- 61
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
N+GC GG+M+ AF++I+ N GI ++ Y Y G GIC+S I +YE+VP +
Sbjct: 62 -NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQD-GICNS-TVNAPVVSIDSYENVPSH 118
Query: 236 DEESLLKAVANQPVSVAIDASA--LQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E+SL KAVANQPVSV +DA+ Q Y G+F G C NH +T VGYGT E +W
Sbjct: 119 NEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGT-ENDKDFW 177
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPVSK 334
++KNSWG++WGE GY R +R+I+ P G+CGI FAS+PV K
Sbjct: 178 IVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVKK 218
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 207 bits (526), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 178/319 (55%), Gaps = 28/319 (8%)
Query: 29 SIAEKFEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFN-NAAIGNRSYTLRLNKFAD 87
++ + WK YG+ YKE E + R I++ NL V N ++G SY L +N D
Sbjct: 7 TLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGD 66
Query: 88 LTPQEFIASQTGFKMSDHSSSLKANGTPFLYKSSQ---VPPSVNWIEKGAVTPVKYQGQC 144
+T +E ++ + ++ S + N T YKS+ +P SV+W EKG VT VKYQG C
Sbjct: 67 MTSEEVMSLMSSLRVP---SQWQRNIT---YKSNPNRILPDSVDWREKGCVTEVKYQGSC 120
Query: 145 -------AVAAVEGINAIKINRLVSLSEQQLVDCATND-NNNGCYGGFMDDAFKYIIQNK 196
AV A+E +K +LVSLS Q LVDC+T N GC GGFM AF+YII NK
Sbjct: 121 GAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNK 180
Query: 197 GITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESLLKAVANQ-PVSVAIDA 255
GI +DA Y Y+ M ++ AA + Y ++P E+ L +AVAN+ PVSV +DA
Sbjct: 181 GIDSDASYPYKAMDQKC--QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDA 238
Query: 256 SALQFY---SGGVFNGYCETFLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQ 312
F+ SG + C +NHGV VGYG G +YWL+KNSWG ++GE+GY R+
Sbjct: 239 RHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGKEYWLVKNSWGHNFGEEGYIRMA 297
Query: 313 RDIDQPQGQCGIAMFASFP 331
R+ CGIA F S+P
Sbjct: 298 RN---KGNHCGIASFPSYP 313
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 138/219 (63%), Gaps = 12/219 (5%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P V+W GAV +K QGQC +AAVEGIN I L+SLSEQ+LVDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
N GC GGFM D F++II N GI +A Y Y G C+ ++ I YE+VP N
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYT-AEEGQCNLDLQQEKYVSIDTYENVPYN 119
Query: 236 DEESLLKAVANQPVSVAIDASA--LQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E +L AVA QPVSVA++A+ Q YS G+F G C T ++H VT VGYGT E GI YW
Sbjct: 120 NEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGT-EGGIDYW 178
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
++KNSWG WGE+GY R+QR++ GQCGIA AS+PV
Sbjct: 179 IVKNSWGTTWGEEGYMRIQRNVGGV-GQCGIAKKASYPV 216
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/219 (50%), Positives = 138/219 (63%), Gaps = 12/219 (5%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P V+W GAV +K QGQC +AAVEGIN I L+SLSEQ+LVDC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
N GC GGFM D F++II N GI +A Y Y G C+ ++ I YE+VP N
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYT-AEEGQCNLDLQQEKYVSIDTYENVPYN 119
Query: 236 DEESLLKAVANQPVSVAIDASA--LQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E +L AVA QPVSVA++A+ Q YS G+F G C T ++H VT VGYGT E GI YW
Sbjct: 120 NEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGT-EGGIDYW 178
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
++KNSWG WGE+GY R+QR++ GQCGIA AS+PV
Sbjct: 179 IVKNSWGTTWGEEGYMRIQRNVGGV-GQCGIAKKASYPV 216
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 194 bits (494), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/324 (38%), Positives = 186/324 (57%), Gaps = 30/324 (9%)
Query: 25 FDEGSIAEKFEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFN-NAAIGNRSYTLRLN 83
+ E + +E WK + + Y + R I++ NL + N A++G +Y L +N
Sbjct: 2 YPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMN 61
Query: 84 KFADLTPQEFIASQTGFKMS-DHSSSLKANGTPFLYK-SSQVPPSVNWIEKGAVTPVKYQ 141
D+T +E + TG K+ HS ++N T ++ + + P SV++ +KG VTPVK Q
Sbjct: 62 HLGDMTSEEVVQKMTGLKVPLSHS---RSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQ 118
Query: 142 GQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQ 194
GQC +V A+EG K +L++LS Q LVDC + N+GC GG+M +AF+Y+ +
Sbjct: 119 GQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQK 176
Query: 195 NKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESLLKAVAN-QPVSVAI 253
N+GI ++ Y Y G + + AA+ Y ++P +E++L +AVA PVSVAI
Sbjct: 177 NRGIDSEDAYPYVGQEESCMYNPTGK--AAKCRGYREIPEGNEKALKRAVARVGPVSVAI 234
Query: 254 DAS--ALQFYSGGVFNGYCETF----LNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDG 307
DAS + QFYS GV+ Y E+ LNH V AVGYG ++G K+W+IKNSWG++WG G
Sbjct: 235 DASLTSFQFYSKGVY--YDESCNSDNLNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKG 291
Query: 308 YFRLQRDIDQPQGQCGIAMFASFP 331
Y + R+ + CGIA ASFP
Sbjct: 292 YILMARNKNNA---CGIANLASFP 312
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 176/325 (54%), Gaps = 28/325 (8%)
Query: 24 TFDEGSIAEKFEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFNNA-AIGNRSYTLRL 82
TFD S+ ++ +WKA + R Y + E +R +++ N+ +E N G S+T+ +
Sbjct: 3 TFDH-SLEAQWTKWKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAM 60
Query: 83 NKFADLTPQEFIASQTGFKMSDHSSSLKANGTPFLYKSSQVPPSVNWIEKGAVTPVKYQG 142
N F D+T +EF GF+ + K P Y + P SV+W EKG VTPVK QG
Sbjct: 61 NAFGDMTSEEFRQVMNGFQ-NRKPRKGKVFQEPLFY---EAPRSVDWREKGYVTPVKNQG 116
Query: 143 QC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQN 195
QC A A+EG K RL+SLSEQ LVDC+ N GC GG MD AF+Y+ N
Sbjct: 117 QCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN 176
Query: 196 KGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESLLKAVAN-QPVSVAID 254
G+ ++ Y YE + K A + D+ P E++L+KAVA P+SVAID
Sbjct: 177 GGLDSEESYPYEATEESCKYNPKYS--VANDAGFVDI-PKQEKALMKAVATVGPISVAID 233
Query: 255 A--SALQFYSGGV-FNGYCETF-LNHGVTAVGYG---TSEEGIKYWLIKNSWGQDWGEDG 307
A + FY G+ F C + ++HGV VGYG T + KYWL+KNSWG++WG G
Sbjct: 234 AGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGG 293
Query: 308 YFRLQRDIDQPQGQCGIAMFASFPV 332
Y ++ +D + CGIA AS+P
Sbjct: 294 YVKMAKD---RRNHCGIASAASYPT 315
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/320 (38%), Positives = 174/320 (54%), Gaps = 27/320 (8%)
Query: 29 SIAEKFEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFNNA-AIGNRSYTLRLNKFAD 87
S+ ++ +WKA + R Y + E +R +++ N+ +E N G S+T+ +N F D
Sbjct: 3 SLEAQWTKWKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAMNAFGD 61
Query: 88 LTPQEFIASQTGFKMSDHSSSLKANGTPFLYKSSQVPPSVNWIEKGAVTPVKYQGQC--- 144
+T +EF G + + K P Y + P SV+W EKG VTPVK QGQC
Sbjct: 62 MTSEEFRQVMNGLQ-NRKPRKGKVFQEPLFY---EAPRSVDWREKGYVTPVKNQGQCGSS 117
Query: 145 ----AVAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQNKGITN 200
A A+EG K RL+SLSEQ LVDC+ + N GC GG MD AF+Y+ N G+ +
Sbjct: 118 WAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDS 177
Query: 201 DAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESLLKAVAN-QPVSVAIDA--SA 257
+ Y YE + K A + D+ P E++L+KAVA P+SVAIDA +
Sbjct: 178 EESYPYEATEESCKYNPKYS--VANDAGFVDI-PKQEKALMKAVATVGPISVAIDAGHES 234
Query: 258 LQFYSGGV-FNGYCETF-LNHGVTAVGYG---TSEEGIKYWLIKNSWGQDWGEDGYFRLQ 312
FY G+ F C + ++HGV VGYG T +G KYWL+KNSWG++WG GY ++
Sbjct: 235 FLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMA 294
Query: 313 RDIDQPQGQCGIAMFASFPV 332
+D + CGIA AS+P
Sbjct: 295 KD---RRNHCGIASAASYPT 311
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 178/315 (56%), Gaps = 25/315 (7%)
Query: 32 EKFEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFNNA-AIGNRSYTLRLNKFADLTP 90
E++ Q+K + ++Y E +R IFKDN+ + N G +Y+ +N+F D++
Sbjct: 25 EQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSK 84
Query: 91 QEFIA--SQTGFKMSDHSSSLKANGTPFLYKSSQVPPSVNWIEKGAVTPVKYQGQCA--- 145
+EF+A ++ + H +L+ P++ + SV+W AV+ VK QGQC
Sbjct: 85 EEFLAYVNRGKAQKPKHPENLR---MPYVSSKKPLAASVDW-RSNAVSEVKDQGQCGSSW 140
Query: 146 ----VAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQNKGITND 201
AVEG A++ RL SLSEQ L+DC+++ N GC GG+MD AF Y I + GI ++
Sbjct: 141 SFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSY-IHDYGIMSE 199
Query: 202 AVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESLLKAVANQ-PVSVAIDAS-ALQ 259
+ Y YE + G + ++ Y D+P DE SL AV PV+VAIDA+ LQ
Sbjct: 200 SAYPYE--AQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQ 257
Query: 260 FYSGGVF-NGYC-ETFLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQ 317
FYSGG+F + C ++ LNHGV VGYG S+ G YW++KNSWG WGE GY+R R+
Sbjct: 258 FYSGGLFYDQTCNQSDLNHGVLVVGYG-SDNGQDYWILKNSWGSGWGESGYWRQVRNYGN 316
Query: 318 PQGQCGIAMFASFPV 332
CGIA AS+P
Sbjct: 317 ---NCGIATAASYPA 328
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/312 (37%), Positives = 167/312 (53%), Gaps = 21/312 (6%)
Query: 30 IAEKFEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFNNAAIGNRSYTLRLNKFADLT 89
+ + FE W ++ + YK E RFEIFKDNL ++ N N SY L LN FAD++
Sbjct: 62 LIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK---NNSYWLGLNVFADMS 118
Query: 90 PQEFIASQTGFKMSDHSSSLKANGTPFLYKSSQVPPSVNWIEKGAVTPVKYQGQC----- 144
EF TG +++++ + +P V+W +KGAVTPVK QG C
Sbjct: 119 NDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWA 178
Query: 145 --AVAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQNKGITNDA 202
AV+ +E I I+ L SEQ+L+DC + + GC GG+ A + + Q GI
Sbjct: 179 FSAVSTIESIIKIRTGNLNEYSEQELLDC--DRRSYGCNGGYPWSALQLVAQ-YGIHYRN 235
Query: 203 VYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESLLKAVANQPVSVAIDASA--LQF 260
Y YEG+ C S + +AA+ V P +E +LL ++ANQPVSV ++A+ Q
Sbjct: 236 TYPYEGVQR-YCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQL 294
Query: 261 YSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQG 320
Y GG+F G C ++H V AVGYG + Y LI+NSWG WGE+GY R++R G
Sbjct: 295 YRGGIFVGPCGNKVDHAVAAVGYGPN-----YILIRNSWGTGWGENGYIRIKRGTGNSYG 349
Query: 321 QCGIAMFASFPV 332
CG+ + +PV
Sbjct: 350 VCGLYTSSFYPV 361
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 171/324 (52%), Gaps = 32/324 (9%)
Query: 30 IAEKFEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFNNA-AIGNRSYTLRLNKFADL 88
+AEK+E +K Y R+Y + E + R +IF+ L E N G SYTL +N F D+
Sbjct: 18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 89 TPQEFIASQTGFKMSDHSSSLKANGTPF-------LYKSSQVPPSVNWIEKGAVTPVKYQ 141
TP+E A G M + L NG P L S + P S +W ++G V+PVK Q
Sbjct: 78 TPEEMKAYTHGLIMP---ADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQ 134
Query: 142 GQCAVA-AVEGINAIKINRLV--------SLSEQQLVDCATNDNNNGCYGGFMDDAFKYI 192
G C + A AI+ + S+SEQQLVDC N GC GG+M+DAF Y+
Sbjct: 135 GSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNAL--GCSGGWMNDAFTYV 192
Query: 193 IQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESLLKAVANQ-PVSV 251
QN GI ++ Y YE M+ G C AA+++ Y + DE L VA + PV+V
Sbjct: 193 AQNGGIDSEGAYPYE-MADGNC-HYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAV 250
Query: 252 AIDAS-ALQFYSGGVF-NGYCET-FLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGY 308
A DA YSGGV+ N CET H V VGYG +E G YWL+KNSWG WG DGY
Sbjct: 251 AFDADDPFGSYSGGVYYNPTCETNKFTHAVLIVGYG-NENGQDYWLVKNSWGDGWGLDGY 309
Query: 309 FRLQRDIDQPQGQCGIAMFASFPV 332
F++ R+ + CGIA AS P
Sbjct: 310 FKIARNANN---HCGIAGVASVPT 330
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 131/219 (59%), Gaps = 12/219 (5%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P V+W GAV +K QG+C A+A VEGIN I L+SLSEQ+L+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
N GC GG++ D F++II N GI + Y Y G C+ + I YE+VP N
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQD-GECNVDLQNEKYVTIDTYENVPYN 119
Query: 236 DEESLLKAVANQPVSVAIDASALQF--YSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E +L AV QPVSVA+DA+ F YS G+F G C T ++H VT VGYGT E GI YW
Sbjct: 120 NEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGT-EGGIDYW 178
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
++KNSW WGE+GY R+ R++ G CGIA S+PV
Sbjct: 179 IVKNSWDTTWGEEGYMRILRNVGGA-GTCGIATMPSYPV 216
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 184 bits (466), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 99/218 (45%), Positives = 132/218 (60%), Gaps = 15/218 (6%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P V+W KGAV +K Q QC AVAAVE IN I+ +L+SLSEQ+LVDC T
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
+ GC GG+M++AF+YII N GI Y Y + G C + I ++ V N
Sbjct: 61 H--GCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQ-GSCKPYRLR--VVSINGFQRVTRN 115
Query: 236 DEESLLKAVANQPVSVAIDASA--LQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E +L AVA+QPVSV ++A+ Q YS G+F G C T NHGV VGYGT + G YW
Sbjct: 116 NESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGT-QSGKNYW 174
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+++NSWGQ+WG GY ++R++ G CGIA S+P
Sbjct: 175 IVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYP 212
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 130/219 (59%), Gaps = 12/219 (5%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P V+W GAV +K QG+C A+A VEGIN I L+SLSEQ+L+DC
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
N GC GG++ D F++II + GI + Y Y G CD + I YE+VP N
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQD-GDCDVALQDQKYVTIDTYENVPYN 119
Query: 236 DEESLLKAVANQPVSVAIDASALQF--YSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E +L AV QPVSVA+DA+ F Y+ G+F G C T ++H + VGYGT E G+ YW
Sbjct: 120 NEWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGT-EGGVDYW 178
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
++KNSW WGE+GY R+ R++ G CGIA S+PV
Sbjct: 179 IVKNSWDTTWGEEGYMRILRNVGGA-GTCGIATMPSYPV 216
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 167/312 (53%), Gaps = 18/312 (5%)
Query: 30 IAEKFEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFNNAAIGNRSYTLRLNKFADLT 89
+ + F W + + Y+ E RFEIFKDNL ++ N N SY L LN+FADL+
Sbjct: 18 LIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK---NNSYWLGLNEFADLS 74
Query: 90 PQEFIASQTGFKMSDHSSSLKANGTPFLYKSSQVPPSVNWIEKGAVTPVKYQGQC----- 144
EF G + D + + +P +V+W +KGAVTPV++QG C
Sbjct: 75 NDEFNEKYVG-SLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGSCGSCWA 133
Query: 145 --AVAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQNKGITNDA 202
AVA VEGIN I+ +LV LSEQ+LVDC ++GC GG+ A +Y+ +N GI +
Sbjct: 134 FSAVATVEGINKIRTGKLVELSEQELVDCERR--SHGCKGGYPPYALEYVAKN-GIHLRS 190
Query: 203 VYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESLLKAVANQPVSVAIDASA--LQF 260
Y Y+ G C + + + + V PN+E +LL A+A QPVSV +++ Q
Sbjct: 191 KYPYKA-KQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQL 249
Query: 261 YSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQG 320
Y GG+F G C T ++ VTAVGYG S LIKNSWG WGE GY R++R G
Sbjct: 250 YKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKRAPGNSPG 308
Query: 321 QCGIAMFASFPV 332
CG+ + +P
Sbjct: 309 VCGLYKSSYYPT 320
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 180 bits (457), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 132/218 (60%), Gaps = 18/218 (8%)
Query: 124 PPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P S++W EKGAVTPVK Q C VA +EGIN I +L+SLSEQ+L+DC
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDC--ERR 59
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
++GC GG+ + +Y++ N G+ + Y YE G C + + IT Y+ VP ND
Sbjct: 60 SHGCDGGYQTTSLQYVVDN-GVHTEREYPYE-KKQGRCRAKDKKGPKVYITGYKYVPAND 117
Query: 237 EESLLKAVANQPVSVAIDASA--LQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYWL 294
E SL++A+ANQPVSV D+ QFY GG++ G C T +H VTAVGYG + Y L
Sbjct: 118 EISLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKT-----YLL 172
Query: 295 IKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
+KNSWG +WGE GY R++R + +G CG+ + FP+
Sbjct: 173 LKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPI 210
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 128/217 (58%), Gaps = 14/217 (6%)
Query: 124 PPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P S++W KGAVTPVK QG C +A VEGIN I L+ LSEQ+LVDC + +
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDC--DKH 59
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
+ GC GG+ + +Y+ N G+ VY Y+ C + +IT Y+ VP N
Sbjct: 60 SYGCKGGYQTTSLQYVANN-GVHTSKVYPYQAKQY-KCRATDKPGPKVKITGYKRVPSNX 117
Query: 237 EESLLKAVANQPVSVAIDASA--LQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYWL 294
E S L A+ANQP+SV ++A Q Y GVF+G C T L+H VTAVGYGTS+ G Y +
Sbjct: 118 ETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSD-GKNYII 176
Query: 295 IKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
IKNSWG +WGE GY RL+R QG CG+ + +P
Sbjct: 177 IKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYP 213
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 177 bits (450), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 128/218 (58%), Gaps = 25/218 (11%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P V+W KGAV P+K QG+C V VE IN I+ L+SLSEQQLVDC+
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCS--K 58
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
N+GC GG+ D A++YII N GI +A Y Y+ G C +A +I + VP
Sbjct: 59 KNHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQ-GPC---RAAKKVVRIDGCKGVPQC 114
Query: 236 DEESLLKAVANQPVSVAIDASALQF--YSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E +L AVA+QP VAIDAS+ QF Y GG+F G C T LNHGV VGYG YW
Sbjct: 115 NENALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYGKD-----YW 169
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+++NSWG+ WGE GY R++R G CG+ A P
Sbjct: 170 IVRNSWGRHWGEQGYTRMKR-----VGGCGLCGIARLP 202
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 177 bits (448), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 132/218 (60%), Gaps = 22/218 (10%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P ++W +KGAVTPVK QG+C V+ VE IN I+ L+SLSEQQLVDC N
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDC--NK 58
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
N+GC GG A++YII N GI +A Y Y+ + G C +A +I Y+ VP
Sbjct: 59 KNHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQ-GPC---RAAKKVVRIDGYKGVPHC 114
Query: 236 DEESLLKAVANQPVSVAIDASALQF--YSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E +L KAVA+QP VAIDAS+ QF Y G+F+G C T LNHGV VGY YW
Sbjct: 115 NENALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWKD-----YW 169
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+++NSWG+ WGE GY R++R G CGIA +P
Sbjct: 170 IVRNSWGRYWGEQGYIRMKR--VGGCGLCGIARLPYYP 205
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 134/224 (59%), Gaps = 17/224 (7%)
Query: 121 SQVPPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCAT 173
S++P V+W +G VTPVK Q C A+EG + K +LVSLSEQ+L+DC+
Sbjct: 5 SELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSR 64
Query: 174 NDNNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAE--DHAAQITNYED 231
+ N C GG M+DAF+Y++ + GI ++ Y Y + +A+ + +I ++D
Sbjct: 65 AEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARD----EECRAQSCEKVVKILGFKD 120
Query: 232 VPPNDEESLLKAVANQPVSVAIDASAL--QFYSGGVFNGYCETFLNHGVTAVGYGTSEEG 289
VP E ++ A+A PVS+AI+A + QFY GVF+ C T L+HGV VGYGT +E
Sbjct: 121 VPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKES 180
Query: 290 IK-YWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
K +W++KNSWG WG DGY + + +GQCG+ + ASFPV
Sbjct: 181 KKDFWIMKNSWGTGWGRDGYMYMAMHKGE-EGQCGLLLDASFPV 223
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 131/221 (59%), Gaps = 18/221 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P SV+W EKG VT VKYQG C AV A+E +K +LVSLS Q LVDC+T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 176 -NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP 234
N GC GGFM AF+YII NKGI +DA Y Y+ M ++ AA + Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC--QYDSKYRAATCSKYTELPY 118
Query: 235 NDEESLLKAVANQ-PVSVAIDASALQFY---SGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
E+ L +AVAN+ PVSV +DA F+ SG + C +NHGV VGYG G
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGK 177
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+YWL+KNSWG ++GE+GY R+ R+ CGIA F S+P
Sbjct: 178 EYWLVKNSWGHNFGEEGYIRMARNKGN---HCGIASFPSYP 215
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 131/221 (59%), Gaps = 18/221 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P SV+W EKG VT VKYQG C AV A+E +K +LVSLS Q LVDC+T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 176 -NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP 234
N GC GGFM AF+YII NKGI +DA Y Y+ M ++ AA + Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC--QYDSKYRAATCSKYTELPY 118
Query: 235 NDEESLLKAVANQ-PVSVAIDASALQFY---SGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
E+ L +AVAN+ PVSV +DA F+ SG + C +NHGV VGYG G
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGK 177
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+YWL+KNSWG ++GE+GY R+ R+ CGIA F S+P
Sbjct: 178 EYWLVKNSWGHNFGEEGYIRMARNKGN---HCGIASFPSYP 215
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 131/221 (59%), Gaps = 18/221 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P SV+W EKG VT VKYQG C AV A+E +K +LVSLS Q LVDC+T
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 176 -NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP 234
N GC GGFM AF+YII NKGI +DA Y Y+ M ++ AA + Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC--QYDSKYRAATCSKYTELPY 119
Query: 235 NDEESLLKAVANQ-PVSVAIDASALQFY---SGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
E+ L +AVAN+ PVSV +DA F+ SG + C +NHGV VGYG G
Sbjct: 120 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGK 178
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+YWL+KNSWG ++GE+GY R+ R+ CGIA F S+P
Sbjct: 179 EYWLVKNSWGHNFGEEGYIRMARNKGN---HCGIASFPSYP 216
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 131/221 (59%), Gaps = 18/221 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P SV+W EKG VT VKYQG C AV A+E +K +LVSLS Q LVDC+T
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 176 -NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP 234
N GC GGFM AF+YII NKGI +DA Y Y+ M ++ AA + Y ++P
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC--QYDSKYRAATCSKYTELPY 120
Query: 235 NDEESLLKAVANQ-PVSVAIDASALQFY---SGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
E+ L +AVAN+ PVSV +DA F+ SG + C +NHGV VGYG G
Sbjct: 121 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGK 179
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+YWL+KNSWG ++GE+GY R+ R+ CGIA F S+P
Sbjct: 180 EYWLVKNSWGHNFGEEGYIRMARNKGN---HCGIASFPSYP 217
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 131/221 (59%), Gaps = 18/221 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P SV+W EKG VT VKYQG C AV A+E +K +LVSLS Q LVDC+T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 176 -NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP 234
N GC GGFM AF+YII NKGI +DA Y Y+ M ++ AA + Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKC--QYDSKYRAATCSKYTELPY 118
Query: 235 NDEESLLKAVANQ-PVSVAIDASALQFY---SGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
E+ L +AVAN+ PVSV +DA F+ SG + C +NHGV VGYG G
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGK 177
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+YWL+KNSWG ++GE+GY R+ R+ CGIA F S+P
Sbjct: 178 EYWLVKNSWGHNFGEEGYIRMARNKGN---HCGIASFPSYP 215
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 173 bits (439), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 131/221 (59%), Gaps = 18/221 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P SV+W EKG VT VKYQG C AV A+E +K +LVSLS Q LVDC+T
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 176 -NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP 234
N GC GGFM AF+YII NKGI +DA Y Y+ M ++ AA + Y ++P
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC--QYDSKYRAATCSKYTELPY 121
Query: 235 NDEESLLKAVANQ-PVSVAIDASALQFY---SGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
E+ L +AVAN+ PVSV +DA F+ SG + C +NHGV VGYG G
Sbjct: 122 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGK 180
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+YWL+KNSWG ++GE+GY R+ R+ CGIA F S+P
Sbjct: 181 EYWLVKNSWGHNFGEEGYIRMARNKGN---HCGIASFPSYP 218
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 131/221 (59%), Gaps = 18/221 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P SV+W EKG VT VKYQG C AV A+E +K +LVSLS Q LVDC+T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 176 -NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP 234
N GC GGFM AF+YII NKGI +DA Y Y+ M ++ AA + Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC--QYDSKYRAATCSKYTELPY 118
Query: 235 NDEESLLKAVANQ-PVSVAIDASALQFY---SGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
E+ L +AVAN+ PVSV +DA F+ SG + C +NHGV VGYG G
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGK 177
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+YWL+KNSWG ++GE+GY R+ R+ CGIA F S+P
Sbjct: 178 EYWLVKNSWGHNFGEEGYIRMARNKGN---HCGIASFPSYP 215
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 131/221 (59%), Gaps = 18/221 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P SV+W EKG VT VKYQG C AV A+E +K +LVSLS Q LVDC+T
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 176 -NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP 234
N GC GGFM AF+YII NKGI +DA Y Y+ M ++ AA + Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC--QYDSKYRAATCSKYTELPY 119
Query: 235 NDEESLLKAVANQ-PVSVAIDASALQFY---SGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
E+ L +AVAN+ PVSV +DA F+ SG + C +NHGV VGYG G
Sbjct: 120 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGK 178
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+YWL+KNSWG ++GE+GY R+ R+ CGIA F S+P
Sbjct: 179 EYWLVKNSWGHNFGEEGYIRMARNKGN---HCGIASFPSYP 216
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 131/221 (59%), Gaps = 18/221 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P SV+W EKG VT VKYQG C AV A+E +K +LVSLS Q LVDC+T
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 176 -NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP 234
N GC GGFM AF+YII NKGI +DA Y Y+ M ++ AA + Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC--QYDSKYRAATCSKYTELPY 119
Query: 235 NDEESLLKAVANQ-PVSVAIDASALQFY---SGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
E+ L +AVAN+ PVSV +DA F+ SG + C +NHGV VGYG G
Sbjct: 120 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGK 178
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+YWL+KNSWG ++GE+GY R+ R+ CGIA F S+P
Sbjct: 179 EYWLVKNSWGHNFGEEGYIRMARNKGN---HCGIASFPSYP 216
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 136/227 (59%), Gaps = 20/227 (8%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P S++W +KGAVT VK QG C A A+EGI+AI RL+S+SEQQ+VDC T
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
GG DDAF+++I N GI +DA Y Y G+ G CD K AA+I Y +VP N
Sbjct: 62 XX--XGGDADDAFRWVITNGGIASDANYPYTGVD-GTCDLNKP--IAARIDGYTNVP-NS 115
Query: 237 EESLLKAVANQPVSVAI--DASALQFYSG-GVFNGY-CE---TFLNHGVTAVGYGTSEEG 289
+LL AVA QPVSV I +++ Q Y+G G+F G C ++H V VGYG++
Sbjct: 116 SSALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTN 175
Query: 290 IKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPVSKES 336
YW++KNSWG +WG DGY ++R+ ++P G C I + S+P S
Sbjct: 176 ADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTKSTS 222
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 131/221 (59%), Gaps = 18/221 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P SV+W EKG VT VKYQG C AV A+E +K +LV+LS Q LVDC+T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 176 -NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP 234
N GC GGFM AF+YII NKGI +DA Y Y+ M ++ AA + Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC--QYDSKYRAATCSKYTELPY 118
Query: 235 NDEESLLKAVANQ-PVSVAIDASALQFY---SGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
E+ L +AVAN+ PVSV +DA F+ SG + C +NHGV VGYG G
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGK 177
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+YWL+KNSWG ++GE+GY R+ R+ CGIA F S+P
Sbjct: 178 EYWLVKNSWGHNFGEEGYIRMARNKGN---HCGIASFPSYP 215
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 129/221 (58%), Gaps = 18/221 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P SV+W EKG VT VKYQG C AV A+E +K +LVSLS Q LVDC+T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 176 -NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP 234
N GC GGFM AF+YII NKGI +DA Y Y+ M ++ AA Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC--QYDSKYRAATCRKYTELPY 118
Query: 235 NDEESLLKAVANQ-PVSVAIDASALQFY---SGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
E+ L +AVAN+ PVSV +DA F+ SG + C +NHGV VGYG G
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGK 177
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+YWL+KNSWG ++GE GY R+ R+ CGIA F S+P
Sbjct: 178 EYWLVKNSWGHNFGEKGYIRMARNKGN---HCGIASFPSYP 215
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 171 bits (433), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 128/221 (57%), Gaps = 18/221 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P SV+W EKG VT VKYQG C AV A+E +K +LVSLS Q LVDC+T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 176 -NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP 234
N GC GGFM AF+YII NKGI +DA Y Y+ M + AA Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC--QYDSAYRAATCRKYTELPY 118
Query: 235 NDEESLLKAVANQ-PVSVAIDASALQFY---SGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
E+ L +AVAN+ PVSV +DA F+ SG + C +NHGV VGYG G
Sbjct: 119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYG-DLNGK 177
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+YWL+KNSWG ++GE GY R+ R+ CGIA F S+P
Sbjct: 178 EYWLVKNSWGHNFGEKGYIRMARNKGN---HCGIASFPSYP 215
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 130/218 (59%), Gaps = 22/218 (10%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P ++W +KGAVTPVK QG C V+ VE IN I+ L+SLSEQ+LVDC +
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDC--DK 58
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
N+GC GG A++YII N GI A Y Y+ + G C +A I Y VP
Sbjct: 59 KNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQ-GPC---QAASKVVSIDGYNGVPFC 114
Query: 236 DEESLLKAVANQPVSVAIDASALQF--YSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E +L +AVA QP +VAIDAS+ QF YS G+F+G C T LNHGVT VGY + YW
Sbjct: 115 NEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGYQAN-----YW 169
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+++NSWG+ WGE GY R+ R G CGIA +P
Sbjct: 170 IVRNSWGRYWGEKGYIRMLR--VGGCGLCGIARLPYYP 205
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/266 (40%), Positives = 144/266 (54%), Gaps = 25/266 (9%)
Query: 82 LNKFADLTPQEFIASQTGFKMSDHSSSLKANGTPFLYKSSQVPPSVNWIEKGAVTPVKYQ 141
+N F D+T +EF GF+ + K P Y + P SV+W EKG VTPVK Q
Sbjct: 2 MNAFGDMTSEEFRQVMNGFQ-NRKPRKGKVFQEPLFY---EAPRSVDWREKGYVTPVKNQ 57
Query: 142 GQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQ 194
GQC A A+EG K RL+SLSEQ LVDC+ N GC GG MD AF+Y+
Sbjct: 58 GQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQD 117
Query: 195 NKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESLLKAVAN-QPVSVAI 253
N G+ ++ Y YE + A + D+ P E++L+KAVA P+SVAI
Sbjct: 118 NGGLDSEESYPYEATEESC--KYNPKYSVANDAGFVDI-PKQEKALMKAVATVGPISVAI 174
Query: 254 DAS--ALQFYSGGV-FNGYCETF-LNHGVTAVGYG---TSEEGIKYWLIKNSWGQDWGED 306
DA + FY G+ F C + ++HGV VGYG T + KYWL+KNSWG++WG
Sbjct: 175 DAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMG 234
Query: 307 GYFRLQRDIDQPQGQCGIAMFASFPV 332
GY ++ +D + CGIA AS+P
Sbjct: 235 GYVKMAKDR---RNHCGIASAASYPT 257
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 139/228 (60%), Gaps = 18/228 (7%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P S +W +KG +T VK+QGQC A A+E +AI LVSLSEQ+L+DC D
Sbjct: 3 PESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCV--DE 60
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGM-----STGICDSIKAEDHAAQITNYED 231
+ GCY G+ +F++++++ GI ++A Y Y+ + I D + +++ QI + E
Sbjct: 61 SEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNES 120
Query: 232 VPPNDEESLLKAVANQPVSVAIDASALQFYSGGVFNG-YCET--FLNHGVTAVGYGTSEE 288
E SL V QP+SV+IDA FYSGG+++G C + +NH V VGYG SE+
Sbjct: 121 TESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDGGNCSSPYGINHFVLIVGYG-SED 179
Query: 289 GIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPVSKES 336
G+ YW+ KNSWG+DWG DGY R+QR+ G CG+ FAS+P+ ++S
Sbjct: 180 GVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIEKS 227
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 168 bits (425), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 135/224 (60%), Gaps = 20/224 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P SV+W +KG VTPVK Q QC A A+EG K +LVSLSEQ LVDC+
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
N GC GGFM AF+Y+ +N G+ ++ Y Y + IC + E+ AQ T + V P
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE-IC-KYRPENSVAQDTGFTVVAPG 118
Query: 236 DEESLLKAVAN-QPVSVAIDA--SALQFYSGGV-FNGYCETF-LNHGVTAVGY---GTSE 287
E++L+KAVA P+SVA+DA S+ QFY G+ F C + L+HGV VGY G +
Sbjct: 119 KEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANS 178
Query: 288 EGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+ KYWL+KNSWG +WG +GY ++ +D + CGIA AS+P
Sbjct: 179 DNSKYWLVKNSWGPEWGSNGYVKIAKDKNN---HCGIATAASYP 219
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 135/224 (60%), Gaps = 20/224 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P SV+W +KG VTPVK Q QC A A+EG K +LVSLSEQ LVDC+
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
N GC GGFM AF+Y+ +N G+ ++ Y Y + IC + E+ AQ T + V P
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDE-IC-KYRPENSVAQDTGFTVVAPG 118
Query: 236 DEESLLKAVAN-QPVSVAIDA--SALQFYSGGV-FNGYCETF-LNHGVTAVGY---GTSE 287
E++L+KAVA P+SVA+DA S+ QFY G+ F C + L+HGV VGY G +
Sbjct: 119 KEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANS 178
Query: 288 EGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+ KYWL+KNSWG +WG +GY ++ +D + CGIA AS+P
Sbjct: 179 DNSKYWLVKNSWGPEWGSNGYVKIAKDKNN---HCGIATAASYP 219
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 137/222 (61%), Gaps = 24/222 (10%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P SV++ EKG VTPVK QGQC +V A+EG K +L++LS Q LVDC +
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-- 59
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
N+GC GG+M +AF+Y+ +N+GI ++ Y Y G AA+ Y ++P +
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC--MYNPTGKAAKCRGYREIPEGN 117
Query: 237 EESLLKAVAN-QPVSVAIDAS--ALQFYSGGVFNGYCETF----LNHGVTAVGYGTSEEG 289
E++L +AVA PVSVAIDAS + QFYS GV+ Y E+ LNH V AVGYG S+ G
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVY--YDESCNSDNLNHAVLAVGYGESK-G 174
Query: 290 IKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
K+W+IKNSWG++WG GY ++ R+ + CGIA ASFP
Sbjct: 175 NKHWIIKNSWGENWGMGGYIKMARNKNN---ACGIANLASFP 213
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/311 (36%), Positives = 162/311 (52%), Gaps = 22/311 (7%)
Query: 34 FEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFN-NAAIGNRSYTLRLNKFADLTPQE 92
+ QWK Y + Y A++ R I++ N+ ++ N +G +YTL LN+F D+T +E
Sbjct: 5 WHQWKRMYNKEYN-GADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEE 63
Query: 93 FIASQTGFKMSDHSSSLKANGTPFLYKSSQVPPSVNWIEKGAVTPVKYQGQCA------- 145
F A +MS +S + ++G P+ + VP ++W E G VT VK QG C
Sbjct: 64 FKAKYL-TEMS-RASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSGWAFST 121
Query: 146 VAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQNKGITNDAVYS 205
+EG +S SEQQLVDC+ NNGC GG M++A++Y+ Q G+ ++ Y
Sbjct: 122 TGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQ-FGLETESSYP 180
Query: 206 YEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESLLKAV-ANQPVSVAIDA-SALQFYSG 263
Y + G C K + A++T + V E L V A P +VA+D S Y
Sbjct: 181 YTAVE-GQCRYNK-QLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRS 238
Query: 264 GVFNG-YCETF-LNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQ 321
G++ C +NH V AVGYGT + G YW++KNSWG WGE GY R+ R+
Sbjct: 239 GIYQSQTCSPLRVNHAVLAVGYGT-QGGTDYWIVKNSWGLSWGERGYIRMVRNRGN---M 294
Query: 322 CGIAMFASFPV 332
CGIA AS P+
Sbjct: 295 CGIASLASLPM 305
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 137/224 (61%), Gaps = 24/224 (10%)
Query: 122 QVPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATN 174
+ P SV++ +KG VTPVK QGQC +V A+EG K +L++LS Q LVDC +
Sbjct: 2 RAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE 61
Query: 175 DNNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP 234
N+GC GG+M +AF+Y+ +N+GI ++ Y Y G AA+ Y ++P
Sbjct: 62 --NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC--MYNPTGKAAKCRGYREIPE 117
Query: 235 NDEESLLKAVAN-QPVSVAIDAS--ALQFYSGGVFNGYCETF----LNHGVTAVGYGTSE 287
+E++L +AVA PVSVAIDAS + QFYS GV+ Y E+ LNH V AVGYG +
Sbjct: 118 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVY--YDESCNSDNLNHAVLAVGYGI-Q 174
Query: 288 EGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+G K+W+IKNSWG++WG GY + R+ + CGIA ASFP
Sbjct: 175 KGNKHWIIKNSWGENWGNKGYILMARNKNNA---CGIANLASFP 215
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 136/222 (61%), Gaps = 24/222 (10%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P SV++ +KG VTPVK QGQC +V A+EG K +L++LS Q LVDC +
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-- 59
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
N+GC GG+M +AF+Y+ +N+GI ++ Y Y G AA+ Y ++P +
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC--MYNPTGKAAKCRGYREIPEGN 117
Query: 237 EESLLKAVAN-QPVSVAIDAS--ALQFYSGGVFNGYCETF----LNHGVTAVGYGTSEEG 289
E++L +AVA PVSVAIDAS + QFYS GV+ Y E+ LNH V AVGYG ++G
Sbjct: 118 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVY--YDESCNSDNLNHAVLAVGYGI-QKG 174
Query: 290 IKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
K+W+IKNSWG++WG GY + R+ + CGIA ASFP
Sbjct: 175 NKHWIIKNSWGENWGNKGYILMARNKNNA---CGIANLASFP 213
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/222 (44%), Positives = 136/222 (61%), Gaps = 24/222 (10%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P SV++ +KG VTPVK QGQC +V A+EG K +L++LS Q LVDC +
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-- 58
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
N+GC GG+M +AF+Y+ +N+GI ++ Y Y G AA+ Y ++P +
Sbjct: 59 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC--MYNPTGKAAKCRGYREIPEGN 116
Query: 237 EESLLKAVAN-QPVSVAIDAS--ALQFYSGGVFNGYCETF----LNHGVTAVGYGTSEEG 289
E++L +AVA PVSVAIDAS + QFYS GV+ Y E+ LNH V AVGYG ++G
Sbjct: 117 EKALKRAVARVGPVSVAIDASLTSFQFYSKGVY--YDESCNSDNLNHAVLAVGYGI-QKG 173
Query: 290 IKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
K+W+IKNSWG++WG GY + R+ + CGIA ASFP
Sbjct: 174 NKHWIIKNSWGENWGNKGYILMARNKNNA---CGIANLASFP 212
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 160 bits (406), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 135/221 (61%), Gaps = 20/221 (9%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
P S+++ +KG VTPVK QGQC +V A+EG K +L++LS Q LVDC +
Sbjct: 1 TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE- 59
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
N+GC GG+M +AF+Y+ +N+GI ++ Y Y G AA+ Y ++P
Sbjct: 60 -NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC--MYNPTGKAAKCRGYREIPEG 116
Query: 236 DEESLLKAVAN-QPVSVAIDAS--ALQFYSGGVF-NGYCET-FLNHGVTAVGYGTSEEGI 290
+E++L +AVA PVSVAIDAS + QFYS GV+ + C + LNH V AVGYG ++G
Sbjct: 117 NEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGI-QKGN 175
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
K+W+IKNSWG+ WG GY + R+ + CGIA ASFP
Sbjct: 176 KHWIIKNSWGESWGNKGYILMARNKNN---ACGIANLASFP 213
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 129/226 (57%), Gaps = 21/226 (9%)
Query: 122 QVPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATN 174
+ P SV+W EKG VTPVK QGQC A A+EG K RL+SLSEQ LVDC+
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 175 DNNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP 234
N GC GG MD AF+Y+ N G+ ++ Y YE + A T + D+ P
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC--KYNPKYSVANDTGFVDI-P 117
Query: 235 NDEESLLKAVAN-QPVSVAIDAS--ALQFYSGGV-FNGYCETF-LNHGVTAVGYG---TS 286
E++L+KAVA P+SVAIDA + FY G+ F C + ++HGV VGYG T
Sbjct: 118 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTE 177
Query: 287 EEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
+ KYWL+KNSWG++WG GY ++ +D + CGIA AS+P
Sbjct: 178 SDNNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 220
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 129/226 (57%), Gaps = 21/226 (9%)
Query: 122 QVPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATN 174
+ P SV+W EKG VTPVK QGQC A A+EG K RL+SLSEQ LVDC+
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 175 DNNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP 234
N GC GG MD AF+Y+ N G+ ++ Y YE + A T + D+ P
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC--KYNPKYSVANDTGFVDI-P 117
Query: 235 NDEESLLKAVAN-QPVSVAIDAS--ALQFYSGGV-FNGYCETF-LNHGVTAVGYG---TS 286
E++L+KAVA P+SVAIDA + FY G+ F C + ++HGV VGYG T
Sbjct: 118 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTE 177
Query: 287 EEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
+ KYWL+KNSWG++WG GY ++ +D + CGIA AS+P
Sbjct: 178 SDNNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 220
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 135/220 (61%), Gaps = 24/220 (10%)
Query: 126 SVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDNNN 178
SV++ +KG VTPVK QGQC +V A+EG K +L++LS Q LVDC + N+
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--ND 59
Query: 179 GCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEE 238
GC GG+M +AF+Y+ +N+GI ++ Y Y G AA+ Y ++P +E+
Sbjct: 60 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESC--MYNPTGKAAKCRGYREIPEGNEK 117
Query: 239 SLLKAVAN-QPVSVAIDAS--ALQFYSGGVFNGYCETF----LNHGVTAVGYGTSEEGIK 291
+L +AVA PVSVAIDAS + QFYS GV+ Y E+ LNH V AVGYG ++G K
Sbjct: 118 ALKRAVARVGPVSVAIDASLTSFQFYSKGVY--YDESCNSDNLNHAVLAVGYGI-QKGNK 174
Query: 292 YWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+W+IKNSWG++WG GY + R+ + CGIA ASFP
Sbjct: 175 HWIIKNSWGENWGNKGYILMARNKNNA---CGIANLASFP 211
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 128/224 (57%), Gaps = 21/224 (9%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P SV+W EKG VTPVK QGQC A A+EG K RL+SLSEQ LVDC+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
N GC GG MD AF+Y+ N G+ ++ Y YE + A T + D+ P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC--KYNPKYSVANDTGFVDI-PKQ 118
Query: 237 EESLLKAVAN-QPVSVAIDAS--ALQFYSGGV-FNGYCETF-LNHGVTAVGYG---TSEE 288
E++L+KAVA P+SVAIDA + FY G+ F C + ++HGV VGYG T +
Sbjct: 119 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESD 178
Query: 289 GIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
KYWL+KNSWG++WG GY ++ +D + CGIA AS+P
Sbjct: 179 NNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 219
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 128/224 (57%), Gaps = 21/224 (9%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P SV+W EKG VTPVK QGQC A A+EG K RL+SLSEQ LVDC+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
N GC GG MD AF+Y+ N G+ ++ Y YE + A T + D+ P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC--KYNPKYSVANDTGFVDI-PKQ 118
Query: 237 EESLLKAVAN-QPVSVAIDAS--ALQFYSGGV-FNGYCETF-LNHGVTAVGYG---TSEE 288
E++L+KAVA P+SVAIDA + FY G+ F C + ++HGV VGYG T +
Sbjct: 119 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESD 178
Query: 289 GIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
KYWL+KNSWG++WG GY ++ +D + CGIA AS+P
Sbjct: 179 NNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 219
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 128/224 (57%), Gaps = 21/224 (9%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P SV+W EKG VTPVK QGQC A A+EG K RL+SLSEQ LVDC+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
N GC GG MD AF+Y+ N G+ ++ Y YE + A T + D+ P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC--KYNPKYSVANDTGFVDI-PKQ 118
Query: 237 EESLLKAVAN-QPVSVAIDAS--ALQFYSGGV-FNGYCETF-LNHGVTAVGYG---TSEE 288
E++L+KAVA P+SVAIDA + FY G+ F C + ++HGV VGYG T +
Sbjct: 119 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESD 178
Query: 289 GIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
KYWL+KNSWG++WG GY ++ +D + CGIA AS+P
Sbjct: 179 NNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 219
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 128/218 (58%), Gaps = 14/218 (6%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P +V+W +KGAVTPV++QG C AVA VEGIN I+ +LV LSEQ+LVDC
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDC--ER 58
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
++GC GG+ A +Y+ +N GI + Y Y+ G C + + + + V PN
Sbjct: 59 RSHGCKGGYPPYALEYVAKN-GIHLRSKYPYK-AKQGTCRAKQVGGPIVKTSGVGRVQPN 116
Query: 236 DEESLLKAVANQPVSVAIDASA--LQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E +LL A+A QPVSV +++ Q Y GG+F G C T ++H VTAVGYG S
Sbjct: 117 NEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYI- 175
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
LIKNSWG WGE GY R++R G CG+ + +P
Sbjct: 176 LIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 157 bits (398), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 127/218 (58%), Gaps = 14/218 (6%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P +V+W +KGAVTPV++QG C AVA VEGIN I+ +LV LSEQ+LVDC
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDC--ER 58
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
++GC GG+ A +Y+ +N GI + Y Y+ G C + + + + V PN
Sbjct: 59 RSHGCKGGYPPYALEYVAKN-GIHLRSKYPYK-AKQGTCRAKQVGGPIVKTSGVGRVQPN 116
Query: 236 DEESLLKAVANQPVSVAIDASA--LQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E +LL A+A QPVSV +++ Q Y GG+F G C T + H VTAVGYG S
Sbjct: 117 NEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYI- 175
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
LIKNSWG WGE GY R++R G CG+ + +P
Sbjct: 176 LIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 157 bits (397), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 124/221 (56%), Gaps = 18/221 (8%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P SV+W EKG VTPVK QGQC A A+EG K RL+SLSEQ LVDC+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
N GC GG MD AF+Y+ N G+ ++ Y YE + A + D+ P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC--KYNPKYSVANDVGFVDI-PKQ 118
Query: 237 EESLLKAVAN-QPVSVAIDAS--ALQFYSGGVF--NGYCETFLNHGVTAVGYGTSEEGIK 291
E++L+KAVA P+SVAIDA + FY G++ + + LNH + VGYG K
Sbjct: 119 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQK 178
Query: 292 YWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
YWL+KNSWG++WG GY ++ +D + CGIA AS+P
Sbjct: 179 YWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 216
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 157 bits (397), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 127/224 (56%), Gaps = 21/224 (9%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P SV+W EKG VTPVK QGQC A A+EG K RL+SLSEQ LVDC+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
N GC GG MD AF+Y+ N G+ ++ Y YE + A + D+ P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC--KYNPKYSVANDAGFVDI-PKQ 118
Query: 237 EESLLKAVAN-QPVSVAIDAS--ALQFYSGGV-FNGYCETF-LNHGVTAVGYG---TSEE 288
E++L+KAVA P+SVAIDA + FY G+ F C + ++HGV VGYG T +
Sbjct: 119 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESD 178
Query: 289 GIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
KYWL+KNSWG++WG GY ++ +D + CGIA AS+P
Sbjct: 179 DNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 219
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 157 bits (397), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 127/224 (56%), Gaps = 21/224 (9%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P SV+W EKG VTPVK QGQC A A+EG K RL+SLSEQ LVDC+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
N GC GG MD AF+Y+ N G+ ++ Y YE + A + D+ P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC--KYNPKYSVANDAGFVDI-PKQ 118
Query: 237 EESLLKAVAN-QPVSVAIDAS--ALQFYSGGV-FNGYCETF-LNHGVTAVGYG---TSEE 288
E++L+KAVA P+SVAIDA + FY G+ F C + ++HGV VGYG T +
Sbjct: 119 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESD 178
Query: 289 GIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
KYWL+KNSWG++WG GY ++ +D + CGIA AS+P
Sbjct: 179 NNKYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYPT 219
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 131/220 (59%), Gaps = 20/220 (9%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P S+++ +KG VTPVK QGQC +V A+EG L++L+ Q LVDC +
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSE-- 59
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
N+GC GG+M +AF+Y+ +N+GI ++ Y Y G AA+ Y ++P +
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESC--MYNPTGKAAKCRGYREIPEGN 117
Query: 237 EESLLKAVAN-QPVSVAIDAS--ALQFYSGGVF-NGYCET-FLNHGVTAVGYGTSEEGIK 291
E +L +AVA PVSVAIDAS + QFYS GV+ + C + LNH V AVGYG + G K
Sbjct: 118 EAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGI-QAGNK 176
Query: 292 YWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+W+IKNSWG+ WG GY + R+ + CGIA ASFP
Sbjct: 177 HWIIKNSWGESWGNAGYILMARNKNN---ACGIANLASFP 213
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 123/219 (56%), Gaps = 18/219 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P V+W +KGAVTPVK QG C AV +EGI I+ L SEQ+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDC--DR 58
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
+ GC GG+ A + + Q GI Y YEG+ C S + +AA+ V P
Sbjct: 59 RSYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQR-YCRSREKGPYAAKTDGVRQVQPY 116
Query: 236 DEESLLKAVANQPVSVAIDASA--LQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E +LL ++ANQPVSV ++A+ Q Y GG+F G C ++H V AVGYG + Y
Sbjct: 117 NEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YI 171
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
LIKNSWG WGE+GY R++R G CG+ + +PV
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 123/219 (56%), Gaps = 18/219 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P V+W +KGAVTPVK QG C AV +EGI I+ L SEQ+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDC--DR 58
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
+ GC GG+ A + + Q GI Y YEG+ C S + +AA+ V P
Sbjct: 59 RSYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQR-YCRSREKGPYAAKTDGVRQVQPY 116
Query: 236 DEESLLKAVANQPVSVAIDASA--LQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E +LL ++ANQPVSV ++A+ Q Y GG+F G C ++H V AVGYG + Y
Sbjct: 117 NEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YI 171
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
LIKNSWG WGE+GY R++R G CG+ + +PV
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 130/218 (59%), Gaps = 18/218 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P S++W +KGAVTPV+ QG C +VAAVEGIN I +L+SLSEQ+L+DC
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDC--ER 58
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
+ GC GGF A +Y+ N GI Y YEG+ C + +A+ + VP N
Sbjct: 59 RSYGCRGGFPLYALQYV-ANSGIHLRQYYPYEGVQR-QCRASQAKGPKVKTDGVGRVPRN 116
Query: 236 DEESLLKAVANQPVSVAIDAS--ALQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E++L++ +A QPVS+ ++A A Q Y GG+F G C T ++H V AVGYG Y
Sbjct: 117 NEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGYGND-----YI 171
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
LIKNSWG WGE GY R++R PQG CG+ + FP
Sbjct: 172 LIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFP 209
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 123/219 (56%), Gaps = 18/219 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P V+W +KGAVTPVK QG C AV +EGI I+ L SEQ+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDC--DR 58
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
+ GC GG+ A + + Q GI Y YEG+ C S + +AA+ V P
Sbjct: 59 RSYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQR-YCRSREKGPYAAKTDGVRQVQPY 116
Query: 236 DEESLLKAVANQPVSVAIDASA--LQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E +LL ++ANQPVSV ++A+ Q Y GG+F G C ++H V AVGYG + Y
Sbjct: 117 NEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YI 171
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
LIKNSWG WGE+GY R++R G CG+ + +PV
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 150 bits (380), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 90/223 (40%), Positives = 128/223 (57%), Gaps = 21/223 (9%)
Query: 124 PPSVNWIEKGA-VTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCATND 175
PPS++W +KG V+PVK QG C A+E AI +++SL+EQQLVDCA N
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
NN+GC GG AF+YI NKGI + Y Y+G + + A + + ++ N
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHC--KFQPDKAIAFVKDVANITMN 119
Query: 236 DEESLLKAVA-NQPVSVAIDASA-LQFYSGGVFNGY-CETF---LNHGVTAVGYGTSEEG 289
DEE++++AVA PVS A + + Y G+++ C +NH V AVGYG E G
Sbjct: 120 DEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYG-EENG 178
Query: 290 IKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
I YW++KNSWG WG +GYF ++R + CG+A AS+P+
Sbjct: 179 IPYWIVKNSWGPQWGMNGYFLIERG----KNMCGLAACASYPI 217
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 122/219 (55%), Gaps = 18/219 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P V+W +KGAVTPVK QG C AV +EGI I+ L SEQ+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDC--DR 58
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
+ GC GG+ A + + Q GI Y YEG+ C S + +AA+ V P
Sbjct: 59 RSYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQR-YCRSREKGPYAAKTDGVRQVQPY 116
Query: 236 DEESLLKAVANQPVSVAIDASA--LQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
++ +LL ++ANQPVSV + A+ Q Y GG+F G C ++H V AVGYG + Y
Sbjct: 117 NQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YI 171
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
LIKNSWG WGE+GY R++R G CG+ + +PV
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 122/219 (55%), Gaps = 18/219 (8%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P V+W +KGAVTPVK QG C AV +EGI I+ L SEQ+L+DC +
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDC--DR 58
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
+ GC GG+ A + + Q GI Y YEG+ C S + +AA+ V P
Sbjct: 59 RSYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQR-YCRSREKGPYAAKTDGVRQVQPY 116
Query: 236 DEESLLKAVANQPVSVAIDASA--LQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
++ +LL ++ANQPVSV + A+ Q Y GG+F G C ++H V AVGYG + Y
Sbjct: 117 NQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YI 171
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
LIKNSWG WGE+GY R++R G CG+ + +PV
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/219 (42%), Positives = 124/219 (56%), Gaps = 14/219 (6%)
Query: 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATND 175
+P SV+W KGAVTPVK+QG C VA VEGIN IK LV LSEQ+LVDC +
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDC--DL 58
Query: 176 NNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235
+ GC G+ + +Y+ QN GI A Y Y C + + + V N
Sbjct: 59 QSYGCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQ-TCRANQVGGPKVKTNGVGRVQSN 116
Query: 236 DEESLLKAVANQPVSVAIDASALQF--YSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYW 293
+E SLL A+A+QPVSV ++++ F Y GG+F G C T ++H VTAVGYG S
Sbjct: 117 NEGSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYI- 175
Query: 294 LIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
LIKNSWG WGE+GY R++R G CG+ + +P+
Sbjct: 176 LIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 214
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 121/218 (55%), Gaps = 18/218 (8%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P V+W +KGAVTPVK QG C AV +EGI I+ L SEQ+L+DC +
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDC--DRR 59
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
+ GC GG+ A + + Q GI Y YEG+ C S + +AA+ V P +
Sbjct: 60 SYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQR-YCRSREKGPYAAKTDGVRQVQPYN 117
Query: 237 EESLLKAVANQPVSVAIDASA--LQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYWL 294
+ +LL ++ANQPVSV + A+ Q Y GG+F G C ++H V AVGYG + Y L
Sbjct: 118 QGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGPN-----YIL 172
Query: 295 IKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
IKNSWG WGE+GY R++R G CG+ + +PV
Sbjct: 173 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 118/205 (57%), Gaps = 15/205 (7%)
Query: 124 PPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P +V+W EKGAVTPVK QGQC + +EG + N LVSLSEQ LV C T D
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDF 61
Query: 177 NNGCYGGFMDDAFKYIIQNKG--ITNDAVYSY-EGMSTGICDSIKAEDHAAQITNYEDVP 233
GC GG MD+AF +I+ + G + +A Y Y G + + A IT++ D+P
Sbjct: 62 --GCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLP 119
Query: 234 PNDEESLLKAVA-NQPVSVAIDASALQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKY 292
DE+++ +A N P+++A+DA++ Y+GG+ L+HGV VGY + Y
Sbjct: 120 -QDEDAIAAYLAENGPLAIAVDATSFMDYNGGILTSCTSEQLDHGVLLVGYNDASN-PPY 177
Query: 293 WLIKNSWGQDWGEDGYFRLQRDIDQ 317
W+IKNSW WGEDGY R+++ +Q
Sbjct: 178 WIIKNSWSNMWGEDGYIRIEKGTNQ 202
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 111/207 (53%), Gaps = 19/207 (9%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P +V+W +GAVT VK QGQC A+ VE + + L +LSEQ LV C D+
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYE----GMSTGICDSIKAEDH--AAQITNYE 230
GC GG M++AF++I+Q N AVY+ + GI H A IT +
Sbjct: 62 --GCSGGLMNNAFEWIVQEN---NGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHV 116
Query: 231 DVPPNDEESLLKAVANQPVSVAIDASALQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
++P ++ + N PV+VA+DAS+ Y+GGV L+HGV VGY S +
Sbjct: 117 ELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEALDHGVLLVGYNDS-AAV 175
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQ 317
YW+IKNSW WGE+GY R+ + +Q
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAKGSNQ 202
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 20/221 (9%)
Query: 128 NWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGC 180
+W VTPVK Q C ++ +VE AI+ N+L++LSEQ+LVDC+ N GC
Sbjct: 22 DWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK--NYGC 79
Query: 181 YGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESL 240
GG +++AF+ +I+ GI D Y Y + +C+ + + I NY VP N +
Sbjct: 80 NGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYG-IKNYLSVPDNKLKEA 138
Query: 241 LKAVANQPVSVAIDASALQFYSGGVFNGYCETFLNHGVTAVGYGTSE---------EGIK 291
L+ + +SVA+ + FY G+F+G C LNH V VG+G E E
Sbjct: 139 LRFLGPISISVAV-SDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHY 197
Query: 292 YWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
Y++IKNSWGQ WGE G+ ++ D +CG+ A P+
Sbjct: 198 YYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 238
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 20/221 (9%)
Query: 128 NWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGC 180
+W VTPVK Q C ++ +VE AI+ N+L++LSEQ+LVDC+ N GC
Sbjct: 23 DWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK--NYGC 80
Query: 181 YGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESL 240
GG +++AF+ +I+ GI D Y Y + +C+ + + I NY VP N +
Sbjct: 81 NGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYG-IKNYLSVPDNKLKEA 139
Query: 241 LKAVANQPVSVAIDASALQFYSGGVFNGYCETFLNHGVTAVGYGTSE---------EGIK 291
L+ + +SVA+ + FY G+F+G C LNH V VG+G E E
Sbjct: 140 LRFLGPISISVAV-SDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHY 198
Query: 292 YWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
Y++IKNSWGQ WGE G+ ++ D +CG+ A P+
Sbjct: 199 YYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 239
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 111/207 (53%), Gaps = 19/207 (9%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P +V+W +GAVT VK QGQC A+ VE + + L +LSEQ LV C D+
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDS 61
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYE----GMSTGICDSIKAEDH--AAQITNYE 230
GC GG M++AF++I+Q N AVY+ + GI H A IT +
Sbjct: 62 --GCSGGLMNNAFEWIVQEN---NGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHV 116
Query: 231 DVPPNDEESLLKAVANQPVSVAIDASALQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
++P ++ + N PV+VA+DAS+ Y+GGV L+HGV VGY S +
Sbjct: 117 ELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDS-AAV 175
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQ 317
YW+IKNSW WGE+GY R+ + +Q
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAKGSNQ 202
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 110/207 (53%), Gaps = 19/207 (9%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P +V+W +GAVT VK QGQC A+ VE + + L +L+EQ LV C D+
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYE----GMSTGICDSIKAEDH--AAQITNYE 230
GC GG M++AF++I+Q N AVY+ + GI H A IT +
Sbjct: 62 --GCSGGLMNNAFEWIVQEN---NGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHV 116
Query: 231 DVPPNDEESLLKAVANQPVSVAIDASALQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
++P ++ + N PV+VA+DAS+ Y+GGV L+HGV VGY +
Sbjct: 117 ELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGY-NDGAAV 175
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQ 317
YW+IKNSW WGE+GY R+ + +Q
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAKGSNQ 202
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 110/207 (53%), Gaps = 19/207 (9%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P +V+W +GAVT VK QGQC A+ VE + + L +L+EQ LV C D+
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDS 61
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYE----GMSTGICDSIKAEDH--AAQITNYE 230
GC GG M++AF++I+Q N AVY+ + GI H A IT +
Sbjct: 62 --GCSGGLMNNAFEWIVQEN---NGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHV 116
Query: 231 DVPPNDEESLLKAVANQPVSVAIDASALQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGI 290
++P ++ + N PV+VA+DAS+ Y+GGV L+HGV VGY +
Sbjct: 117 ELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGY-NDGAAV 175
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQ 317
YW+IKNSW WGE+GY R+ + +Q
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAKGSNQ 202
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 112/222 (50%), Gaps = 22/222 (9%)
Query: 128 NWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGC 180
+W G VTPVK Q C +V +VE AI+ L SEQ+LVDC+ NNGC
Sbjct: 25 DWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVK--NNGC 82
Query: 181 YGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESL 240
YGG++ +AF +I G+ + Y Y C+ +K + I +Y +P + +
Sbjct: 83 YGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCN-LKRCNERYTIKSYVSIPDDKFKEA 141
Query: 241 LKAVANQPVSVAIDASA-LQFYSGGVFNGYCETFLNHGVTAVGYGTSE---------EGI 290
L+ + P+S++I AS FY GG ++G C NH V VGYG + E
Sbjct: 142 LRYLG--PISISIAASDDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEKF 199
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
Y++IKNSWG DWGE GY L+ D + + C I A P+
Sbjct: 200 YYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPL 241
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 97/173 (56%), Gaps = 15/173 (8%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P SV+W EKG VTPVK QGQC A A+EG K RL+SLSEQ LVDC+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
N GC GG MD AF+Y+ N G+ ++ Y YE + A T + D+ P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC--KYNPKYSVANDTGFVDI-PKQ 118
Query: 237 EESLLKAVAN-QPVSVAIDAS--ALQFYSGGV-FNGYCETF-LNHGVTAVGYG 284
E++L+KAVA P+SVAIDA + FY G+ F C + ++HGV VGYG
Sbjct: 119 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 97/173 (56%), Gaps = 15/173 (8%)
Query: 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P SV+W EKG VTPVK QGQC A A+EG K RL+SLSEQ LVDC+
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
N GC GG MD AF+Y+ N G+ ++ Y YE + A T + D+ P
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESC--KYNPKYSVANDTGFVDI-PKQ 118
Query: 237 EESLLKAVAN-QPVSVAIDAS--ALQFYSGGV-FNGYCETF-LNHGVTAVGYG 284
E++L+KAVA P+SVAIDA + FY G+ F C + ++HGV VGYG
Sbjct: 119 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 106/220 (48%), Gaps = 20/220 (9%)
Query: 124 PPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
PP +W KGAVT VK QG C VEG + L+SLSEQ+L+DC D
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDK 61
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
C GG +A+ I G+ + YSY+G AE I + ++ N+
Sbjct: 62 --ACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSC--QFSAEKAKVYIQDSVELSQNE 117
Query: 237 EESLLKAVANQPVSVAIDASALQFYSGGV---FNGYCETFL-NHGVTAVGYGTSEEGIKY 292
++ P+SVAI+A +QFY G+ C +L +H V VGYG + + +
Sbjct: 118 QKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSD-VPF 176
Query: 293 WLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332
W IKNSWG DWGE GY+ L R G CG+ AS V
Sbjct: 177 WAIKNSWGTDWGEKGYYYLHRG----SGACGVNTMASSAV 212
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 149/317 (47%), Gaps = 46/317 (14%)
Query: 34 FEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFNNAAIGNRSYTLRLNKFAD---LTP 90
FE++K + ++Y + + F +++ V+ N AI + S L L++F + ++
Sbjct: 8 FEEYKKAFNKSYATFEDEEAARKNFLESVKYVQS-NGGAINHLS-DLSLDEFKNRFLMSA 65
Query: 91 QEFIASQTGFKMSDHSSSLKANGTPFLYKSSQVPPSVNWIEKGAVTPVKYQGQCA----- 145
+ F +T F ++ +++ NG P ++ + VTP++ QG C
Sbjct: 66 EAFEHLKTQFDLNAETNACSINGN--------APAEIDLRQMRTVTPIRMQGGCGSAWAF 117
Query: 146 --VAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQNKGITNDAV 203
VAA E ++ + L+EQ+LVDCA+ +GC+G + +YI Q+ G+ ++
Sbjct: 118 SGVAATESAYLAYRDQSLDLAEQELVDCASQ---HGCHGDTIPRGIEYI-QHNGVVQESY 173
Query: 204 YSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESLLKAVANQPVSVAI-----DASAL 258
Y Y C A+ I+NY + P + + +A+A ++A+ D A
Sbjct: 174 YRYVAREQS-CRRPNAQRFG--ISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAF 230
Query: 259 QFYSGGVF----NGYCETFLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRD 314
+ Y G NGY + H V VGY ++ +G+ YW+++NSW +WG++GY +
Sbjct: 231 RHYDGRTIIQRDNGYQPNY--HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAAN 287
Query: 315 IDQPQGQCGIAMFASFP 331
ID + M +P
Sbjct: 288 ID-------LMMIEEYP 297
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 98/209 (46%), Gaps = 26/209 (12%)
Query: 120 SSQVPPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCA 172
S VP ++ VTP++ QG C VAA E N + LSEQ+LVDCA
Sbjct: 8 SVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCA 67
Query: 173 TNDNNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDV 232
+ +GC+G + +YI QN G+ + Y Y C ++ + I+NY +
Sbjct: 68 SQ---HGCHGDTIPRGIEYIQQN-GVVEERSYPYVAREQR-CRRPNSQHYG--ISNYCQI 120
Query: 233 PPNDEESLLKAVANQPVSVAI-----DASALQFYSGGVF----NGYCETFLNHGVTAVGY 283
P D + + +A+ ++A+ D A Q Y G NGY + H V VGY
Sbjct: 121 YPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNY--HAVNIVGY 178
Query: 284 GTSEEGIKYWLIKNSWGQDWGEDGYFRLQ 312
G S +G YW+++NSW WG+ GY Q
Sbjct: 179 G-STQGDDYWIVRNSWDTTWGDSGYGYFQ 206
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 124 PPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P ++ + VTP++ QG C VAA E N+ + L+EQ+LVDCA+
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQ-- 68
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
+GC+G + +YI Q+ G+ ++ Y Y C A+ I+NY + P +
Sbjct: 69 -HGCHGDTIPRGIEYI-QHNGVVQESYYRYVAREQS-CRRPNAQRFG--ISNYCQIYPPN 123
Query: 237 EESLLKAVANQPVSVAI-----DASALQFYSGGVF----NGYCETFLNHGVTAVGYGTSE 287
+ +A+A ++A+ D A + Y G NGY + H V VGY ++
Sbjct: 124 VNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGY-SNA 180
Query: 288 EGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+G+ YW+++NSW +WG++GY +ID + M +P
Sbjct: 181 QGVDYWIVRNSWDTNWGDNGYGYFAANID-------LMMIEEYP 217
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 33/224 (14%)
Query: 124 PPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P ++ + VTP++ QG C VAA E + + L+EQ+LVDCA+
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ-- 68
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
+GC+G + +YI Q+ G+ ++ Y Y C A+ I+NY + P +
Sbjct: 69 -HGCHGDTIPRGIEYI-QHNGVVQESYYRYVAREQS-CRRPNAQRFG--ISNYCQIYPPN 123
Query: 237 EESLLKAVANQPVSVAI-----DASALQFYSGGVF----NGYCETFLNHGVTAVGYGTSE 287
+ +A+A ++A+ D A + Y G NGY + H V VGY ++
Sbjct: 124 ANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGY-SNA 180
Query: 288 EGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+G+ YW+++NSW +WG++GY +ID + M +P
Sbjct: 181 QGVDYWIVRNSWDTNWGDNGYGYFAANID-------LMMIEEYP 217
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 106/224 (47%), Gaps = 33/224 (14%)
Query: 124 PPSVNWIEKGAVTPVKYQGQCA-------VAAVEGINAIKINRLVSLSEQQLVDCATNDN 176
P ++ + VTP++ QG C VAA E + + L+EQ+LVDCA+
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ-- 68
Query: 177 NNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPND 236
+GC+G + +YI Q+ G+ ++ Y Y C A+ I+NY + P +
Sbjct: 69 -HGCHGDTIPRGIEYI-QHNGVVQESYYRYVAREQS-CRRPNAQRFG--ISNYCQIYPPN 123
Query: 237 EESLLKAVANQPVSVAI-----DASALQFYSGGVF----NGYCETFLNHGVTAVGYGTSE 287
+ +A+A ++A+ D A + Y G NGY + H V VGY ++
Sbjct: 124 ANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGY-SNA 180
Query: 288 EGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
+G+ YW+++NSW +WG++GY +ID + M +P
Sbjct: 181 QGVDYWIVRNSWDTNWGDNGYGYFAANID-------LMMIEEYP 217
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 109/240 (45%), Gaps = 36/240 (15%)
Query: 123 VPPSVNWIEKGA---VTPVKYQ---GQCAVAAVEGINAIKINRLVS------LSEQQLVD 170
+P S +W V+PV+ Q G C A G+ +I L + LS Q++V
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 266
Query: 171 CATNDNNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYE 230
C+ GC GGF Q+ G+ +A + Y G + +K + + Y
Sbjct: 267 CS--QYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPC--KMKEDCFRYYSSEYH 322
Query: 231 DVPP-----NDEESLLKAVANQPVSVAIDA-SALQFYSGGVFN--GYCETF-----LNHG 277
V N+ L+ V + P++VA + Y G+++ G + F NH
Sbjct: 323 YVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHA 382
Query: 278 VTAVGYGT-SEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMF--ASFPVSK 334
V VGYGT S G+ YW++KNSWG WGE+GYFR++R D +C I A+ P+ K
Sbjct: 383 VLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTD----ECAIESIAVAATPIPK 438
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 32/197 (16%)
Query: 139 KYQGQCAVAAVEGINAIKIN-------RLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKY 191
+Y G C A A +IN LS Q ++DC N C GG + Y
Sbjct: 61 QYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCG---NAGSCEGGNDLSVWDY 117
Query: 192 IIQNKGITNDAVYSYEGMS--------TGICDSIKAEDHAAQITNYEDVPPND------- 236
Q+ GI ++ +Y+ G C+ K E HA I NY D
Sbjct: 118 AHQH-GIPDETCNNYQAKDQECDKFNQCGTCNEFK-ECHA--IRNYTLWRVGDYGSLSGR 173
Query: 237 EESLLKAVANQPVSVAIDAS-ALQFYSGGVFNGYCET-FLNHGVTAVGYGTSEEGIKYWL 294
E+ + + AN P+S I A+ L Y+GG++ Y +T ++NH V+ G+G S+ G +YW+
Sbjct: 174 EKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISD-GTEYWI 232
Query: 295 IKNSWGQDWGEDGYFRL 311
++NSWG+ WGE G+ R+
Sbjct: 233 VRNSWGEPWGERGWLRI 249
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 32/197 (16%)
Query: 139 KYQGQCAVAAVEGINAIKIN-------RLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKY 191
+Y G C A A +IN LS Q ++DC N C GG + Y
Sbjct: 26 QYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCG---NAGSCEGGNDLSVWDY 82
Query: 192 IIQNKGITNDAVYSYEGMS--------TGICDSIKAEDHAAQITNYEDVPPND------- 236
Q+ GI ++ +Y+ G C+ K E HA I NY D
Sbjct: 83 AHQH-GIPDETCNNYQAKDQECDKFNQCGTCNEFK-ECHA--IRNYTLWRVGDYGSLSGR 138
Query: 237 EESLLKAVANQPVSVAIDASA-LQFYSGGVFNGYCET-FLNHGVTAVGYGTSEEGIKYWL 294
E+ + + AN P+S I A+ L Y+GG++ Y +T ++NH V+ G+G S+ G +YW+
Sbjct: 139 EKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISD-GTEYWI 197
Query: 295 IKNSWGQDWGEDGYFRL 311
++NSWG+ WGE G+ R+
Sbjct: 198 VRNSWGEPWGERGWLRI 214
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 33/225 (14%)
Query: 135 VTPVKYQ---GQCAVAAVEGINAIKINRLVS------LSEQQLVDCATNDNNNGCYGGFM 185
V+PV+ Q G C A G+ +I L + LS Q++V C+ GC GGF
Sbjct: 221 VSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVSCSPYAQ--GCDGGFP 278
Query: 186 DDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP-------NDEE 238
Q+ G+ + + Y T K +++ + + E N+
Sbjct: 279 YLIAGKYAQDFGVVEENCFPY----TATDAPCKPKENCLRYYSSEYYYVGGFYGGCNEAL 334
Query: 239 SLLKAVANQPVSVAIDASA-LQFYSGGVFN--GYCETF-----LNHGVTAVGYGTSE-EG 289
L+ V + P++VA + Y G+++ G + F NH V VGYG G
Sbjct: 335 MKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTG 394
Query: 290 IKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPVSK 334
+ YW++KNSWG WGE GYFR++R D+ + IAM A+ P+ K
Sbjct: 395 LDYWIVKNSWGSQWGESGYFRIRRGTDECAIE-SIAM-AAIPIPK 437
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 64.3 bits (155), Expect = 9e-11, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 275 NHGVTAVGYGT-SEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMF--ASFP 331
NH V VGYGT S G+ YW++KNSWG WGE+GYFR++R D +C I A+ P
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTD----ECAIESIAVAATP 65
Query: 332 VSK 334
+ K
Sbjct: 66 IPK 68
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 48/238 (20%)
Query: 129 WIEKGAVTPVKYQGQC----AVAAVEGIN---AIKINRLVSL--SEQQLVDCATNDNNNG 179
W + + ++ QG C A AVE I+ I N VS+ S + L+ C + +G
Sbjct: 17 WPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDG 76
Query: 180 CYGGFMDDAFKYIIQNKGITNDAVY-SYEGMSTGICDSIKAEDHAAQ--ITNYEDVPP-- 234
C GG+ +A+ + + KG+ + +Y S+ G +A + A+ T D P
Sbjct: 77 CNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCS 135
Query: 235 -------------------------NDEESLLKAV-ANQPVSVAIDA-SALQFYSGGVFN 267
N E+ ++ + N PV A S Y GV+
Sbjct: 136 KICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ 195
Query: 268 GYC-ETFLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGI 324
E H + +G+G E G YWL+ NSW DWG++G+F++ R Q CGI
Sbjct: 196 HVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRG----QDHCGI 248
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 52/240 (21%)
Query: 129 WIEKGAVTPVKYQGQC----AVAAVEGIN---AIKINRLVSL--SEQQLVDCATNDNNNG 179
W + + ++ QG C A AVE I+ I N VS+ S + L+ C + +G
Sbjct: 74 WPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDG 133
Query: 180 CYGGFMDDAFKYIIQNKGITNDAVY-SYEGM------------------STG-------- 212
C GG+ +A+ + + KG+ + +Y S+ G TG
Sbjct: 134 CNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCS 192
Query: 213 -ICD-----SIKAEDHAAQITNYEDVPPNDEESLLKAVANQPVSVAIDA-SALQFYSGGV 265
IC+ + K + H N V ++++ + + N PV A S Y GV
Sbjct: 193 KICEPGYSPTYKQDKHYGY--NSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGV 250
Query: 266 FNGYC-ETFLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGI 324
+ E H + +G+G E G YWL+ NSW DWG++G+F++ R D CGI
Sbjct: 251 YQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQD----HCGI 305
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 98/241 (40%), Gaps = 54/241 (22%)
Query: 129 WIEKGAVTPVKYQGQC----AVAAVEGIN---AIKINRLVSL--SEQQLVDCATNDNNNG 179
W + + ++ QG C A AVE I+ I N VS+ S + L+ C + +G
Sbjct: 13 WPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDG 72
Query: 180 CYGGFMDDAFKYIIQNKGITNDAVY-SYEGMSTGICDSIKAEDHAAQ-----ITNYEDVP 233
C GG+ +A+ + + KG+ + +Y S+ G SI +H T D P
Sbjct: 73 CNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRP---YSIPPCEHHVNGSRPPCTGEGDTP 128
Query: 234 P---------------------------NDEESLLKAV-ANQPVSVAIDA-SALQFYSGG 264
N E+ ++ + N PV A S Y G
Sbjct: 129 KCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSG 188
Query: 265 VFNGYC-ETFLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCG 323
V+ E H + +G+G E G YWL+ NSW DWG++G+F++ R D CG
Sbjct: 189 VYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQD----HCG 243
Query: 324 I 324
I
Sbjct: 244 I 244
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 98/241 (40%), Gaps = 54/241 (22%)
Query: 129 WIEKGAVTPVKYQGQC----AVAAVEGIN---AIKINRLVSL--SEQQLVDCATNDNNNG 179
W + + ++ QG C A AVE I+ I N VS+ S + L+ C + +G
Sbjct: 11 WPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDG 70
Query: 180 CYGGFMDDAFKYIIQNKGITNDAVY-SYEGMSTGICDSIKAEDHAAQ-----ITNYEDVP 233
C GG+ +A+ + + KG+ + +Y S+ G SI +H T D P
Sbjct: 71 CNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRP---YSIPPCEHHVNGSRPPCTGEGDTP 126
Query: 234 P---------------------------NDEESLLKAV-ANQPVSVAIDA-SALQFYSGG 264
N E+ ++ + N PV A S Y G
Sbjct: 127 KCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSG 186
Query: 265 VFNGYC-ETFLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCG 323
V+ E H + +G+G E G YWL+ NSW DWG++G+F++ R D CG
Sbjct: 187 VYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQD----HCG 241
Query: 324 I 324
I
Sbjct: 242 I 242
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 98/241 (40%), Gaps = 54/241 (22%)
Query: 129 WIEKGAVTPVKYQGQC----AVAAVEGIN---AIKINRLVSL--SEQQLVDCATNDNNNG 179
W + + ++ QG C A AVE I+ I N VS+ S + L+ C + +G
Sbjct: 12 WPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDG 71
Query: 180 CYGGFMDDAFKYIIQNKGITNDAVY-SYEGMSTGICDSIKAEDHAAQ-----ITNYEDVP 233
C GG+ +A+ + + KG+ + +Y S+ G SI +H T D P
Sbjct: 72 CNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRP---YSIPPCEHHVNGSRPPCTGEGDTP 127
Query: 234 P---------------------------NDEESLLKAV-ANQPVSVAIDA-SALQFYSGG 264
N E+ ++ + N PV A S Y G
Sbjct: 128 KCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSG 187
Query: 265 VFNGYC-ETFLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCG 323
V+ E H + +G+G E G YWL+ NSW DWG++G+F++ R D CG
Sbjct: 188 VYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQD----HCG 242
Query: 324 I 324
I
Sbjct: 243 I 243
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 106/252 (42%), Gaps = 52/252 (20%)
Query: 129 WIEKGAVTPVKYQGQC----AVAAVEGIN---AIKINRLVSL--SEQQLVDCATNDNNNG 179
W + ++ QG C A AVE ++ I N V++ S + L+ C +G
Sbjct: 73 WSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDG 132
Query: 180 CYGGFMDDAFKYIIQNKGITNDAVY-SYEGM------------------STGICDSIKA- 219
C GG+ A+ + + KG+ + VY S+ G TG D+ K
Sbjct: 133 CNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTPKCN 191
Query: 220 ------------EDHAAQITNYEDVPPNDEESLLKAVANQPVSVAIDA-SALQFYSGGVF 266
ED T+Y V +++E + + N PV A S Y GV+
Sbjct: 192 KMCEAGYSTSYKEDKHYGYTSYS-VSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVY 250
Query: 267 NGYCETFLN-HGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGI- 324
+ H + +G+G E G+ YWL+ NSW DWG++G+F++ R + CGI
Sbjct: 251 KHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRG----ENHCGIE 305
Query: 325 -AMFASFPVSKE 335
+ A P +++
Sbjct: 306 SEIVAGIPRTQQ 317
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 78/190 (41%), Gaps = 34/190 (17%)
Query: 161 VSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQNKGITNDAVYSYE------------- 207
V +S L+ C + D +GC GG D A+ Y + G+ +D Y
Sbjct: 122 VHISAGDLLACCS-DCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNG 179
Query: 208 -------GMSTGICDSIKAEDHAAQITNYED----VPPNDEESLLKAVANQPVSVAIDA- 255
T CD +D + NY +++ + + P VA D
Sbjct: 180 YPPCSQFNFDTPKCD-YTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY 238
Query: 256 SALQFYSGGVFNGYCETFLN-HGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRD 314
Y+ GV++ +L H V VG+GTS G+ YW I NSW +WG DGYF ++R
Sbjct: 239 EDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSN-GVPYWKIANSWNTEWGMDGYFLIRRG 297
Query: 315 IDQPQGQCGI 324
+CGI
Sbjct: 298 ----SSECGI 303
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 50/239 (20%)
Query: 129 WIEKGAVTPVKYQGQC----AVAAVEGIN---AIKINRLVSL--SEQQLVDCATNDNNNG 179
W + ++ QG C A AVE ++ I N V++ S + L+ C +G
Sbjct: 17 WSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDG 76
Query: 180 CYGGFMDDAFKYIIQNKGITNDAVY-SYEGM------------------STGICDSIKA- 219
C GG+ A+ + + KG+ + VY S+ G TG D+ K
Sbjct: 77 CNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTPKCN 135
Query: 220 ------------EDHAAQITNYEDVPPNDEESLLKAVANQPVSVAIDA-SALQFYSGGVF 266
ED T+Y V +++E + + N PV A S Y GV+
Sbjct: 136 KMCEAGYSTSYKEDKHYGYTSYS-VSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVY 194
Query: 267 NGYCETFLN-HGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGI 324
+ H + +G+G E G+ YWL+ NSW DWG++G+F++ R + CGI
Sbjct: 195 KHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRG----ENHCGI 248
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 100/239 (41%), Gaps = 50/239 (20%)
Query: 129 WIEKGAVTPVKYQGQC----AVAAVEGIN---AIKINRLVSL--SEQQLVDCATNDNNNG 179
W + ++ QG C A AVE ++ I N V++ S + L+ C +G
Sbjct: 11 WSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDG 70
Query: 180 CYGGFMDDAFKYIIQNKGITNDAVY-SYEGM------------------STGICDSIKA- 219
C GG+ A+ + + KG+ + VY S+ G TG D+ K
Sbjct: 71 CNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGDTPKCN 129
Query: 220 ------------EDHAAQITNYEDVPPNDEESLLKAVANQPVSVAIDA-SALQFYSGGVF 266
ED T+Y V +++E + + N PV A S Y GV+
Sbjct: 130 KMCEAGYSTSYKEDKHYGYTSY-SVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVY 188
Query: 267 NGYCETFLN-HGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGI 324
+ H + +G+G E G+ YWL+ NSW DWG++G+F++ R + CGI
Sbjct: 189 KHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRG----ENHCGI 242
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 78/190 (41%), Gaps = 34/190 (17%)
Query: 161 VSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQNKGITNDAVYSYE------------- 207
V +S L+ C + D +GC GG D A+ Y + G+ +D Y
Sbjct: 144 VHISAGDLLACCS-DCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNG 201
Query: 208 -------GMSTGICDSIKAEDHAAQITNYED----VPPNDEESLLKAVANQPVSVAIDA- 255
T C+ +D + NY +++ + + P VA D
Sbjct: 202 YPPCSQFNFDTPKCN-YTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY 260
Query: 256 SALQFYSGGVFNGYCETFLN-HGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRD 314
Y+ GV++ +L H V VG+GTS G+ YW I NSW +WG DGYF ++R
Sbjct: 261 EDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSN-GVPYWKIANSWNTEWGMDGYFLIRRG 319
Query: 315 IDQPQGQCGI 324
+CGI
Sbjct: 320 ----SSECGI 325
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 78/190 (41%), Gaps = 34/190 (17%)
Query: 161 VSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQNKGITNDAVYSYE------------- 207
V +S L+ C + D +GC GG D A+ Y + G+ +D Y
Sbjct: 121 VHISAGDLLACCS-DCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNG 178
Query: 208 -------GMSTGICDSIKAEDHAAQITNYED----VPPNDEESLLKAVANQPVSVAIDA- 255
T C+ +D + NY +++ + + P VA D
Sbjct: 179 YPPCSQFNFDTPKCN-YTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY 237
Query: 256 SALQFYSGGVFNGYCETFLN-HGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRD 314
Y+ GV++ +L H V VG+GTS G+ YW I NSW +WG DGYF ++R
Sbjct: 238 EDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSN-GVPYWKIANSWNTEWGMDGYFLIRRG 296
Query: 315 IDQPQGQCGI 324
+CGI
Sbjct: 297 ----SSECGI 302
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 235 NDEESLLKAVANQPVSVAIDA-SALQFYSGGVFNGYC-ETFLNHGVTAVGYGTSEEGIKY 292
N++E + + N PV A S Y GV+ E H + +G+G E G Y
Sbjct: 156 NEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPY 214
Query: 293 WLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGI--AMFASFPVSKE 335
WL+ NSW DWG++G+F++ R D CGI + A P + +
Sbjct: 215 WLVGNSWNTDWGDNGFFKILRGQD----HCGIESEIVAGMPCTHQ 255
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 235 NDEESLLKAVAN-QPVSVAIDA--SALQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIK 291
NDE+++ K + PV L + SG + ET H + +G+G E
Sbjct: 157 NDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITGETLGGHAIRIIGWGV-ENKAP 215
Query: 292 YWLIKNSWGQDWGEDGYFRLQRDIDQ 317
YWLI NSW +DWGE+GYFR+ R D+
Sbjct: 216 YWLIANSWNEDWGENGYFRIVRGRDE 241
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 235 NDEESLLKAVANQPVSVAIDA-SALQFYSGGVFNGYC-ETFLNHGVTAVGYGTSEEGIKY 292
N++E + + N PV A S Y GV+ E H + +G+G E G Y
Sbjct: 156 NEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPY 214
Query: 293 WLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGI--AMFASFPVS 333
WL+ NSW DWG++G+F++ R D CGI + A P +
Sbjct: 215 WLVANSWNTDWGDNGFFKILRGQD----HCGIESEIVAGMPCT 253
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 235 NDEESLLKAVANQPVSVAIDA-SALQFYSGGVFNGYC-ETFLNHGVTAVGYGTSEEGIKY 292
N++E + + N PV A S Y GV+ E H + +G+G E G Y
Sbjct: 108 NEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPY 166
Query: 293 WLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGI--AMFASFPVS 333
WL+ NSW DWG++G+F++ R D CGI + A P +
Sbjct: 167 WLVGNSWNTDWGDNGFFKILRGQD----HCGIESEIVAGMPCT 205
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 45/200 (22%)
Query: 161 VSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQNKGITNDAVY-SYEGMSTGICDSIKA 219
V +S + L+ C + +GC GG+ +A+ + + KG+ + +Y S+ G SI
Sbjct: 3 VEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRP---YSIPP 58
Query: 220 EDHAAQ-----ITNYEDVPP---------------------------NDEESLLKAV-AN 246
+H T D P N E+ ++ + N
Sbjct: 59 CEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKN 118
Query: 247 QPVSVAIDA-SALQFYSGGVFNGYC-ETFLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWG 304
PV A S Y GV+ E H + +G+G E G YWL+ NSW DWG
Sbjct: 119 GPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWG 177
Query: 305 EDGYFRLQRDIDQPQGQCGI 324
++G+F++ R D CGI
Sbjct: 178 DNGFFKILRGQD----HCGI 193
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 25 FDEGSIAEKFEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFNNAAIGNRSYTLRLNK 84
+ E + F ++A Y ++Y E +R+ IFK+NLV + N SY+L++N
Sbjct: 16 WKEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGY---SYSLKMNH 72
Query: 85 FADLTPQEFIASQTGFKMSDHSSS 108
F DL+ EF GFK S + S
Sbjct: 73 FGDLSRDEFRRKYLGFKKSRNLKS 96
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 51.2 bits (121), Expect = 9e-07, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 291 KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331
KYWL+KNSWG++WG GY ++ +D + CGIA AS+P
Sbjct: 3 KYWLVKNSWGEEWGMGGYVKMAKD---RRNHCGIASAASYP 40
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 275 NHGVTAVGYG--TSEEGIK--YWLIKNSWGQDWGEDGYFRL 311
+H V VGYG + EG K YW+++NSWG WG++GYF++
Sbjct: 199 DHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 275 NHGVTAVGYG--TSEEGIK--YWLIKNSWGQDWGEDGYFRL 311
+H V VGYG + EG K YW+++NSWG WG++GYF++
Sbjct: 198 DHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Query: 276 HGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYF 309
H V VGY ++ I+++ I+NSWG + GEDGYF
Sbjct: 237 HAVLCVGY---DDEIRHFRIRNSWGNNVGEDGYF 267
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 35.8 bits (81), Expect = 0.032, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 32 EKFEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFNNA-AIGNRSYTLRLNKFADLTP 90
E++ ++K+++ + Y E+ E+ R I+ ++ +E N G ++ + +N ADLTP
Sbjct: 8 EEWVEYKSKFDKNY-EAEEDLMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTP 66
Query: 91 QEFIASQTGFKM 102
+EF A ++G K+
Sbjct: 67 EEF-AQRSGKKV 77
>pdb|1NLR|A Chain A, Endo-1,4-Beta-Glucanase Celb2, Cellulase, Native Structure
Length = 234
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 66 ERFNNAAIGNRSYTLRLNKFADLTPQEFIASQTGFKMSDHSSSLKANGTPFLYKS 120
E F I R Y ++ N++ PQ A+ TGF+++ S NG P Y S
Sbjct: 6 EPFGTTTIQGR-YVVQNNRWGSTAPQCVTATDTGFRVTQADGSAPTNGAPKSYPS 59
>pdb|2NLR|A Chain A, Streptomyces Lividans Endoglucanase (Ec: 3.2.1.4) Complex
With Modified Glucose Trimer
Length = 234
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 66 ERFNNAAIGNRSYTLRLNKFADLTPQEFIASQTGFKMSDHSSSLKANGTPFLYKS 120
E F I R Y ++ N++ PQ A+ TGF+++ S NG P Y S
Sbjct: 6 EPFGTTTIQGR-YVVQNNRWGSTAPQCVTATDTGFRVTQADGSAPTNGAPKSYPS 59
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 269 YCETFLNHGVT--AVGYGTSEEG-IKYWLIKNSWGQDWGEDGYF 309
+ E+ + H +T AV ++G W ++NSWG+D G GY
Sbjct: 364 FGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 269 YCETFLNHGVT--AVGYGTSEEG-IKYWLIKNSWGQDWGEDGYF 309
+ E+ + H +T AV ++G W ++NSWG+D G GY
Sbjct: 364 FGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>pdb|1A6R|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a
Length = 471
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 269 YCETFLNHGVTAVGYG---TSEEGIKYWLIKNSWGQDWGEDGYF 309
Y E+ + H + G TS+ ++Y ++NSWG+D G+DG +
Sbjct: 379 YHESLMTHAMLITGCHVDETSKLPLRY-RVENSWGKDSGKDGLY 421
>pdb|3GCB|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDELTAK454
Length = 470
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 269 YCETFLNHGVTAVGYG---TSEEGIKYWLIKNSWGQDWGEDGYF 309
Y E+ + H + G TS+ ++Y ++NSWG+D G+DG +
Sbjct: 379 YHESLMTHAMLITGCHVDETSKLPLRY-RVENSWGKDSGKDGLY 421
>pdb|1GCB|A Chain A, Gal6, Yeast Bleomycin Hydrolase Dna-Binding Protease
(Thiol)
Length = 454
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 269 YCETFLNHGVTAVGYG---TSEEGIKYWLIKNSWGQDWGEDGYF 309
Y E+ + H + G TS+ ++Y ++NSWG+D G+DG +
Sbjct: 362 YHESLMTHAMLITGCHVDETSKLPLRY-RVENSWGKDSGKDGLY 404
>pdb|2E03|A Chain A, Crystal Structure Of Nq67e Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 269 YCETFLNHGVTAVGYG---TSEEGIKYWLIKNSWGQDWGEDGYF 309
Y E+ + H + G TS+ ++Y ++NSWG+D G+DG +
Sbjct: 366 YHESLMTHAMLITGCHVDETSKLPLRY-RVENSWGKDSGKDGLY 408
>pdb|2YQC|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The Apo-Like
Form
pdb|2YQH|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQH|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQJ|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQJ|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQS|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Product-Binding Form
Length = 486
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 155 IKINRLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQNKGITND 201
++++RL S + D A ND C +++ + K++IQN G+ ++
Sbjct: 409 LEVDRLDEFSPLKNADGAKNDTPTTCRNHYLERSSKWVIQNGGVIDN 455
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 271 ETFLNHGVTAVGYGTSEEGIKYWLIKNSWG 300
ET +HG G +EG +Y+ +KNSWG
Sbjct: 313 ETTDDHGXQIYGIAKDQEGNEYYXVKNSWG 342
>pdb|2XZM|C Chain C, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|C Chain C, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 243
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 137 PVKYQGQCAVAAVEGINAIKINRL-VSLSEQQLVDCATNDNNNGC 180
P+K++G CA A VE +N + + V L+ ++ D GC
Sbjct: 93 PIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGAKGC 137
>pdb|3I57|A Chain A, Type 2 Repeat Of The Mucus Binding Protein Mub From
Lactobacillus Reuteri
pdb|3I57|B Chain B, Type 2 Repeat Of The Mucus Binding Protein Mub From
Lactobacillus Reuteri
Length = 185
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 48 SAENSKRFE-----IFKDNLVAVERFNNAAIGNRSYTL 80
+AE K+FE +FKDN A E+F+N ++ YT+
Sbjct: 34 TAEGIKKFEGDGYELFKDNFPAGEKFDNDDTNDQFYTV 71
>pdb|3S6X|A Chain A, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,3-Sialyllactose
pdb|3S6X|B Chain B, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,3-Sialyllactose
pdb|3S6X|C Chain C, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,3-Sialyllactose
pdb|3S6Y|A Chain A, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,6-Sialyllactose
pdb|3S6Y|B Chain B, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,6-Sialyllactose
pdb|3S6Y|C Chain C, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,6-Sialyllactose
pdb|3S6Z|A Chain A, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,8-Disialyllactose
pdb|3S6Z|B Chain B, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,8-Disialyllactose
pdb|3S6Z|C Chain C, Structure Of Reovirus Attachment Protein Sigma1 In Complex
With Alpha- 2,8-Disialyllactose
Length = 325
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 274 LNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQ 312
+ +G V G S G ++ KN W + W +DG RL+
Sbjct: 262 VTYGAQTVAIGLSSGGTPQYMSKNLWVEQW-QDGVLRLR 299
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,425,959
Number of Sequences: 62578
Number of extensions: 437590
Number of successful extensions: 1530
Number of sequences better than 100.0: 126
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1010
Number of HSP's gapped (non-prelim): 140
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)