Query 043883
Match_columns 348
No_of_seqs 276 out of 1825
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:12:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 2.3E-78 4.9E-83 554.7 25.6 292 28-332 65-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 7E-75 1.5E-79 554.3 35.8 292 27-332 31-339 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 4.5E-74 9.7E-79 564.3 31.7 301 24-332 159-487 (489)
4 PTZ00200 cysteine proteinase; 100.0 8.4E-73 1.8E-77 553.5 31.5 293 27-332 119-444 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 1.1E-65 2.3E-70 487.7 30.2 279 38-332 30-323 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 3.5E-53 7.6E-58 389.1 21.5 202 123-332 1-241 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 1.2E-52 2.5E-57 384.5 22.4 203 123-332 1-237 (239)
8 cd02620 Peptidase_C1A_Cathepsi 100.0 1.2E-51 2.5E-56 377.3 20.5 197 124-329 1-234 (236)
9 cd02248 Peptidase_C1A Peptidas 100.0 3.8E-51 8.2E-56 367.0 22.4 199 124-331 1-210 (210)
10 PTZ00049 cathepsin C-like prot 100.0 1.7E-49 3.6E-54 398.6 22.5 208 121-336 379-679 (693)
11 PTZ00364 dipeptidyl-peptidase 100.0 2.2E-49 4.7E-54 393.9 22.7 202 121-332 203-458 (548)
12 PF00112 Peptidase_C1: Papain 100.0 4E-49 8.6E-54 354.9 18.0 204 123-332 1-219 (219)
13 smart00645 Pept_C1 Papain fami 100.0 1.1E-44 2.3E-49 316.4 17.5 161 123-328 1-170 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 3.9E-41 8.5E-46 303.5 19.4 187 126-315 1-213 (223)
15 PTZ00462 Serine-repeat antigen 100.0 1.7E-40 3.7E-45 342.2 20.6 195 135-332 544-780 (1004)
16 KOG1544 Predicted cysteine pro 100.0 1.6E-41 3.4E-46 307.9 8.0 257 63-330 151-457 (470)
17 COG4870 Cysteine protease [Pos 99.9 6.1E-25 1.3E-29 204.7 9.1 191 121-316 97-315 (372)
18 cd00585 Peptidase_C1B Peptidas 99.8 1.4E-19 3E-24 177.2 12.3 78 237-314 294-399 (437)
19 PF08246 Inhibitor_I29: Cathep 99.7 1.5E-17 3.3E-22 118.6 7.2 58 34-93 1-58 (58)
20 smart00848 Inhibitor_I29 Cathe 99.6 3E-15 6.5E-20 106.2 5.2 57 34-92 1-57 (57)
21 PF03051 Peptidase_C1_2: Pepti 99.4 1.9E-11 4.2E-16 120.1 16.8 78 237-314 295-400 (438)
22 COG3579 PepC Aminopeptidase C 97.3 7.7E-05 1.7E-09 69.8 0.9 77 236-312 296-400 (444)
23 PF08127 Propeptide_C1: Peptid 96.2 0.0051 1.1E-07 40.2 3.0 35 62-101 3-37 (41)
24 PF13529 Peptidase_C39_2: Pept 94.5 0.17 3.6E-06 41.3 7.2 56 235-299 87-144 (144)
25 PF14399 Transpep_BrtH: NlpC/p 87.2 1.6 3.5E-05 41.2 6.5 55 237-297 78-133 (317)
26 PF05543 Peptidase_C47: Stapho 84.0 3.2 7E-05 35.9 6.1 64 236-314 90-154 (175)
27 COG4990 Uncharacterized protei 81.6 3.7 8E-05 35.7 5.5 52 230-300 116-168 (195)
28 KOG4128 Bleomycin hydrolases a 80.3 0.2 4.4E-06 47.3 -2.7 77 236-312 305-412 (457)
29 PF09778 Guanylate_cyc_2: Guan 76.2 11 0.00023 33.9 6.9 51 236-286 112-172 (212)
30 cd02549 Peptidase_C39A A sub-f 68.1 16 0.00035 29.5 6.0 44 240-299 70-114 (141)
31 PF13956 Ibs_toxin: Toxin Ibs, 62.6 4 8.6E-05 21.5 0.8 14 1-14 1-14 (19)
32 PF10855 DUF2648: Protein of u 61.8 5.8 0.00013 24.2 1.5 27 1-43 1-27 (33)
33 PF11873 DUF3393: Domain of un 61.8 9.4 0.0002 34.1 3.5 19 1-19 1-19 (204)
34 PF15240 Pro-rich: Proline-ric 59.8 6.9 0.00015 34.0 2.2 20 4-23 2-21 (179)
35 PF12385 Peptidase_C70: Papain 59.7 26 0.00056 30.0 5.5 38 236-286 97-135 (166)
36 PRK11443 lipoprotein; Provisio 55.4 11 0.00024 30.8 2.7 18 1-18 1-18 (124)
37 PF09403 FadA: Adhesion protei 55.4 17 0.00037 29.8 3.8 39 1-44 1-39 (126)
38 PF11153 DUF2931: Protein of u 46.9 15 0.00033 32.8 2.5 21 1-21 1-21 (216)
39 PF07172 GRP: Glycine rich pro 45.0 16 0.00034 28.5 1.9 14 3-16 4-17 (95)
40 COG5510 Predicted small secret 42.4 21 0.00046 23.4 1.9 15 1-15 2-16 (44)
41 cd00044 CysPc Calpains, domain 42.4 38 0.00082 32.1 4.5 27 274-301 235-263 (315)
42 PF10731 Anophelin: Thrombin i 42.3 22 0.00047 25.1 2.0 21 3-23 4-24 (65)
43 PF11777 DUF3316: Protein of u 37.6 26 0.00056 28.1 2.2 17 1-17 1-17 (114)
44 KOG4702 Uncharacterized conser 36.6 1.5E+02 0.0033 21.6 5.7 31 32-63 29-59 (77)
45 PRK09810 entericidin A; Provis 36.2 34 0.00075 22.3 2.1 15 1-15 2-16 (41)
46 PF02402 Lysis_col: Lysis prot 33.5 12 0.00026 24.6 -0.3 13 1-13 1-13 (46)
47 PF01640 Peptidase_C10: Peptid 32.8 2E+02 0.0043 25.1 7.3 51 238-310 141-192 (192)
48 PRK10081 entericidin B membran 32.8 38 0.00083 22.8 2.0 13 1-13 2-14 (48)
49 PF11948 DUF3465: Protein of u 30.7 60 0.0013 26.8 3.2 17 1-17 1-17 (131)
50 PRK10144 formate-dependent nit 29.0 1.1E+02 0.0024 25.1 4.5 11 87-97 73-83 (126)
51 PF05984 Cytomega_UL20A: Cytom 29.0 46 0.001 25.1 2.1 22 1-22 1-22 (100)
52 PF14060 DUF4252: Domain of un 27.0 71 0.0015 26.6 3.3 33 2-39 1-33 (155)
53 PF10614 CsgF: Type VIII secre 26.7 94 0.002 26.1 3.8 63 1-63 1-78 (142)
54 PF12393 Dr_adhesin: Dr family 26.6 80 0.0017 17.4 2.2 16 1-16 1-17 (21)
55 PF15588 Imm7: Immunity protei 26.5 2.1E+02 0.0045 22.9 5.8 36 277-313 17-58 (115)
56 PF08139 LPAM_1: Prokaryotic m 26.3 57 0.0012 18.9 1.7 11 2-13 8-18 (25)
57 PF07438 DUF1514: Protein of u 23.0 2E+02 0.0044 20.6 4.3 17 1-17 1-19 (66)
58 COG3088 CcmH Uncharacterized p 22.2 1.6E+02 0.0036 24.9 4.4 16 1-16 1-16 (153)
59 TIGR02744 TrbI_Ftype type-F co 22.1 3.3E+02 0.0072 21.9 6.0 44 28-71 37-81 (112)
60 PF07305 DUF1454: Protein of u 21.9 93 0.002 27.4 3.0 18 1-18 1-18 (200)
61 PRK11372 lysozyme inhibitor; P 21.4 68 0.0015 25.6 1.9 18 1-18 3-20 (109)
62 PF00879 Defensin_propep: Defe 20.8 96 0.0021 21.3 2.3 17 1-17 1-17 (52)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-78 Score=554.69 Aligned_cols=292 Identities=39% Similarity=0.719 Sum_probs=256.5
Q ss_pred hhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEcccCCCCCHHHHHHhhcCcCCCCCcc
Q 043883 28 GSIAEKFEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFNNAAIGNRSYTLRLNKFADLTPQEFIASQTGFKMSDHSS 107 (348)
Q Consensus 28 ~~~~~~f~~f~~~~~k~Y~s~~E~~~R~~iF~~n~~~I~~~N~~~~~~~s~~~g~N~FsD~t~eEf~~~~~~~~~~~~~~ 107 (348)
....++|..|+.+|+|+|.+.+|..+|+.||.+|+..+++++.+ ...|.+.|+|+|||||+|||++++++.+......
T Consensus 65 l~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~--d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~~ 142 (372)
T KOG1542|consen 65 LGLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQEN--DPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSKL 142 (372)
T ss_pred cchHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhc--CccccccCccchhhcCHHHHHHHhhccccccccC
Confidence 34578899999999999999999999999999999999999987 4458999999999999999999998766531111
Q ss_pred cccCCCCccccCC-CCCCCceecccCCCCCcccccccc-------HHHHHHHHHHHHcCCCcCCCHHHHHhhcCCCCCCC
Q 043883 108 SLKANGTPFLYKS-SQVPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDNNNG 179 (348)
Q Consensus 108 ~~~~~~~~~~~~~-~~lP~~~Dwr~~g~v~pv~dQg~C-------a~~~~e~~~~i~~~~~~~lS~q~l~dC~~~~~~~g 179 (348)
. .........+ ..||++||||++|.||||||||+| +++++|++++|++|++++||||||+||+. .++|
T Consensus 143 ~--~~~~~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~--~d~g 218 (372)
T KOG1542|consen 143 P--GDAAEAPIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS--CDNG 218 (372)
T ss_pred c--cccccCcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC--cCCc
Confidence 1 1111111233 789999999999999999999987 78999999999999999999999999997 4999
Q ss_pred CCCCchhHHHHHHHHcCCCCCCCcccccCCcCC-CCCCcccCCccEEEeeeEecCCCCHHHHHHHHH-cCCeEEEEecCc
Q 043883 180 CYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTG-ICDSIKAEDHAAQITNYEDVPPNDEESLLKAVA-NQPVSVAIDASA 257 (348)
Q Consensus 180 C~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~-~C~~~~~~~~~~~i~~~~~v~~~~~~~lk~~l~-~GPV~v~i~~~~ 257 (348)
|+||.+..||+|+++.+|+..|.+|||++. .+ .|..++ ....+.|.+|..++ .||++|.++|. +|||+|+|++..
T Consensus 219 C~GGl~~nA~~~~~~~gGL~~E~dYPY~g~-~~~~C~~~~-~~~~v~I~~f~~l~-~nE~~ia~wLv~~GPi~vgiNa~~ 295 (372)
T KOG1542|consen 219 CNGGLMDNAFKYIKKAGGLEKEKDYPYTGK-KGNQCHFDK-SKIVVSIKDFSMLS-NNEDQIAAWLVTFGPLSVGINAKP 295 (372)
T ss_pred CCCCChhHHHHHHHHhCCccccccCCcccc-CCCccccch-hhceEEEeccEecC-CCHHHHHHHHHhcCCeEEEEchHH
Confidence 999999999999888889999999999999 55 999874 66789999999998 59999999998 899999999779
Q ss_pred cccccCceEcC---CCCCC-CCeEEEEEEeeecCCCceEEEEEcCCCCCCCCCcEEEEEecCCCCCCccccccccceee
Q 043883 258 LQFYSGGVFNG---YCETF-LNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332 (348)
Q Consensus 258 f~~Y~~Giy~~---~c~~~-~~Hav~iVGyg~~~~g~~yWiikNSWG~~WGe~GY~~i~~~~~~~~~~Cgi~~~~~~p~ 332 (348)
+++|++||..+ .|+.. ++|||+|||||.+.-.++|||||||||++|||+||+||.||. |.|||+++++-+.
T Consensus 296 mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~----N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 296 MQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGS----NACGIADMVSSAA 370 (372)
T ss_pred HHHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccc----cccccccchhhhh
Confidence 99999999988 48865 899999999998633899999999999999999999999996 6799999987654
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=7e-75 Score=554.34 Aligned_cols=292 Identities=36% Similarity=0.621 Sum_probs=242.7
Q ss_pred hhhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEcccCCCCCHHHHHHhhcCcCCCCCc
Q 043883 27 EGSIAEKFEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFNNAAIGNRSYTLRLNKFADLTPQEFIASQTGFKMSDHS 106 (348)
Q Consensus 27 ~~~~~~~f~~f~~~~~k~Y~s~~E~~~R~~iF~~n~~~I~~~N~~~~~~~s~~~g~N~FsD~t~eEf~~~~~~~~~~~~~ 106 (348)
..++..+|++||++|+|+|.+.+|+.+|+.||.+|+++|++||++ +.+|++|+|+|+|||+|||.+++++.......
T Consensus 31 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~---~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~ 107 (348)
T PTZ00203 31 GTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQAR---NPHARFGITKFFDLSEAEFAARYLNGAAYFAA 107 (348)
T ss_pred ccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhcc---CCCeEEeccccccCCHHHHHHHhcCCCccccc
Confidence 567888999999999999998889999999999999999999987 57999999999999999999877642111000
Q ss_pred ccccCCCCcccc--CC-CCCCCceecccCCCCCcccccccc-------HHHHHHHHHHHHcCCCcCCCHHHHHhhcCCCC
Q 043883 107 SSLKANGTPFLY--KS-SQVPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDN 176 (348)
Q Consensus 107 ~~~~~~~~~~~~--~~-~~lP~~~Dwr~~g~v~pv~dQg~C-------a~~~~e~~~~i~~~~~~~lS~q~l~dC~~~~~ 176 (348)
... ........ .. .+||++||||++|+|+||||||.| +++++|++++|++++.+.||+|||+||+. .
T Consensus 108 ~~~-~~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~--~ 184 (348)
T PTZ00203 108 AKQ-HAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDH--V 184 (348)
T ss_pred ccc-cccccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccC--C
Confidence 000 00000111 11 368999999999999999999987 78899999999999999999999999986 3
Q ss_pred CCCCCCCchhHHHHHHHHc--CCCCCCCcccccCCcCC---CCCCcccCCccEEEeeeEecCCCCHHHHHHHHH-cCCeE
Q 043883 177 NNGCYGGFMDDAFKYIIQN--KGITNDAVYSYEGMSTG---ICDSIKAEDHAAQITNYEDVPPNDEESLLKAVA-NQPVS 250 (348)
Q Consensus 177 ~~gC~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~~---~C~~~~~~~~~~~i~~~~~v~~~~~~~lk~~l~-~GPV~ 250 (348)
+.||+||++..||+|+.++ +|+++|++|||.+. .+ .|..........++++|..++. ++++|+++|+ +|||+
T Consensus 185 ~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~-~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~ 262 (348)
T PTZ00203 185 DNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSG-NGDVPECSNSSELAPGARIDGYVSMES-SERVMAAWLAKNGPIS 262 (348)
T ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCccccCCCccC-CCCCCcCCCCcccccceEecceeecCc-CHHHHHHHHHhCCCEE
Confidence 7899999999999999864 57999999999987 55 5864321123567889988874 8899999998 79999
Q ss_pred EEEecCccccccCceEcCCCCC-CCCeEEEEEEeeecCCCceEEEEEcCCCCCCCCCcEEEEEecCCCCCCccccccccc
Q 043883 251 VAIDASALQFYSGGVFNGYCET-FLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFAS 329 (348)
Q Consensus 251 v~i~~~~f~~Y~~Giy~~~c~~-~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WGe~GY~~i~~~~~~~~~~Cgi~~~~~ 329 (348)
|+|++.+|++|++|||+. |.. .+||||+|||||.+ +|.+|||||||||++|||+|||||+|+. |.|||++.++
T Consensus 263 v~i~a~~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~-~g~~YWiikNSWG~~WGe~GY~ri~rg~----n~Cgi~~~~~ 336 (348)
T PTZ00203 263 IAVDASSFMSYHSGVLTS-CIGEQLNHGVLLVGYNMT-GEVPYWVIKNSWGEDWGEKGYVRVTMGV----NACLLTGYPV 336 (348)
T ss_pred EEEEhhhhcCccCceeec-cCCCCCCeEEEEEEEecC-CCceEEEEEcCCCCCcCcCceEEEEcCC----CcccccceEE
Confidence 999988999999999985 854 58999999999984 7899999999999999999999999985 5799997666
Q ss_pred eee
Q 043883 330 FPV 332 (348)
Q Consensus 330 ~p~ 332 (348)
...
T Consensus 337 ~~~ 339 (348)
T PTZ00203 337 SVH 339 (348)
T ss_pred EEe
Confidence 554
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=4.5e-74 Score=564.30 Aligned_cols=301 Identities=34% Similarity=0.610 Sum_probs=251.9
Q ss_pred CCChhhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEcccCCCCCHHHHHHhhcCcCCC
Q 043883 24 TFDEGSIAEKFEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFNNAAIGNRSYTLRLNKFADLTPQEFIASQTGFKMS 103 (348)
Q Consensus 24 ~~~~~~~~~~f~~f~~~~~k~Y~s~~E~~~R~~iF~~n~~~I~~~N~~~~~~~s~~~g~N~FsD~t~eEf~~~~~~~~~~ 103 (348)
..+..+....|++|+.+|+|+|.+.+|+.+|+.||.+|+++|++||++ ++.+|++|+|+|+|||+|||++++++....
T Consensus 159 ~~~n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~--~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~ 236 (489)
T PTZ00021 159 LMTNLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNK--ENVLYKKGMNRFGDLSFEEFKKKYLTLKSF 236 (489)
T ss_pred hccChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhcc--CCCCEEEeccccccCCHHHHHHHhcccccc
Confidence 335667778899999999999999999999999999999999999987 568999999999999999999988764321
Q ss_pred CC-c-ccccCCCCc-------cccCC-CCCCCceecccCCCCCcccccccc-------HHHHHHHHHHHHcCCCcCCCHH
Q 043883 104 DH-S-SSLKANGTP-------FLYKS-SQVPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQ 166 (348)
Q Consensus 104 ~~-~-~~~~~~~~~-------~~~~~-~~lP~~~Dwr~~g~v~pv~dQg~C-------a~~~~e~~~~i~~~~~~~lS~q 166 (348)
.. . ......... ..... ..+|++||||++|.|+||||||.| +++++|++++|++++.+.||+|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQ 316 (489)
T PTZ00021 237 DFKSNGKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQ 316 (489)
T ss_pred ccccccccccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHH
Confidence 10 0 000000000 00111 124999999999999999999987 6788999999999999999999
Q ss_pred HHHhhcCCCCCCCCCCCchhHHHHHHHHcCCCCCCCcccccCCcCCCCCCcccCCccEEEeeeEecCCCCHHHHHHHHH-
Q 043883 167 QLVDCATNDNNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESLLKAVA- 245 (348)
Q Consensus 167 ~l~dC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~lk~~l~- 245 (348)
||+||+. .+.||.||++..||+|+.+++||++|++|||.+..++.|.... ....++|++|..++ +++|+++|+
T Consensus 317 qLVDCs~--~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~-~~~~~~i~~y~~i~---~~~lk~al~~ 390 (489)
T PTZ00021 317 ELVDCSF--KNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDR-CKEKYKIKSYVSIP---EDKFKEAIRF 390 (489)
T ss_pred HHhhhcc--CCCCCCCcchHhhhhhhhhccccCcccccCccCCCCCcccccc-ccccceeeeEEEec---HHHHHHHHHh
Confidence 9999986 4889999999999999988789999999999986347897642 34567899999886 578999998
Q ss_pred cCCeEEEEecC-ccccccCceEcCCCCCCCCeEEEEEEeeecC---------CCceEEEEEcCCCCCCCCCcEEEEEecC
Q 043883 246 NQPVSVAIDAS-ALQFYSGGVFNGYCETFLNHGVTAVGYGTSE---------EGIKYWLIKNSWGQDWGEDGYFRLQRDI 315 (348)
Q Consensus 246 ~GPV~v~i~~~-~f~~Y~~Giy~~~c~~~~~Hav~iVGyg~~~---------~g~~yWiikNSWG~~WGe~GY~~i~~~~ 315 (348)
+|||+|+|++. +|++|++|||+++|+..++|||+|||||+++ .+.+|||||||||++|||+|||||+|+.
T Consensus 391 ~GPVsv~i~a~~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~ 470 (489)
T PTZ00021 391 LGPISVSIAVSDDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDE 470 (489)
T ss_pred cCCeEEEEEeecccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCC
Confidence 79999999998 9999999999988988899999999999742 1257999999999999999999999997
Q ss_pred CCCCCccccccccceee
Q 043883 316 DQPQGQCGIAMFASFPV 332 (348)
Q Consensus 316 ~~~~~~Cgi~~~~~~p~ 332 (348)
+...|+|||++.++||+
T Consensus 471 ~g~~n~CGI~t~a~yP~ 487 (489)
T PTZ00021 471 NGLMKTCSLGTEAYVPL 487 (489)
T ss_pred CCCCCCCCCcccceeEe
Confidence 64457899999999998
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=8.4e-73 Score=553.51 Aligned_cols=293 Identities=34% Similarity=0.615 Sum_probs=244.8
Q ss_pred hhhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEcccCCCCCHHHHHHhhcCcCCCCCc
Q 043883 27 EGSIAEKFEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFNNAAIGNRSYTLRLNKFADLTPQEFIASQTGFKMSDHS 106 (348)
Q Consensus 27 ~~~~~~~f~~f~~~~~k~Y~s~~E~~~R~~iF~~n~~~I~~~N~~~~~~~s~~~g~N~FsD~t~eEf~~~~~~~~~~~~~ 106 (348)
+.++...|++|+.+|+|+|.+.+|+.+|+.+|++|+++|++||.. .+|++|+|+|+|||+|||.+++++.+.+...
T Consensus 119 e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~----~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~ 194 (448)
T PTZ00200 119 EFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKGD----EPYSKEINKFSDLTEEEFRKLFPVIKVPPKS 194 (448)
T ss_pred hHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcCc----CCeEEeccccccCCHHHHHHHhccCCCcccc
Confidence 456777899999999999999999999999999999999999964 6899999999999999999887654321110
Q ss_pred c---c-c---c--CCCCcccc-------------CC-CCCCCceecccCCCCCcccccc-cc-------HHHHHHHHHHH
Q 043883 107 S---S-L---K--ANGTPFLY-------------KS-SQVPPSVNWIEKGAVTPVKYQG-QC-------AVAAVEGINAI 155 (348)
Q Consensus 107 ~---~-~---~--~~~~~~~~-------------~~-~~lP~~~Dwr~~g~v~pv~dQg-~C-------a~~~~e~~~~i 155 (348)
. . . . .....+.. .. ..+|++||||+.|.|+|||||| .| +++++|++++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i 274 (448)
T PTZ00200 195 NSTSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKI 274 (448)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHH
Confidence 0 0 0 0 00000000 00 1269999999999999999999 88 67889999999
Q ss_pred HcCCCcCCCHHHHHhhcCCCCCCCCCCCchhHHHHHHHHcCCCCCCCcccccCCcCCCCCCcccCCccEEEeeeEecCCC
Q 043883 156 KINRLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPN 235 (348)
Q Consensus 156 ~~~~~~~lS~q~l~dC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~i~~~~~v~~~ 235 (348)
++++.+.||+|||+||+. .+.||.||++..||+|++++ ||++|++|||.+. .+.|.... ....+|.+|..++
T Consensus 275 ~~~~~~~LSeQqLvDC~~--~~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~-~~~C~~~~--~~~~~i~~y~~~~-- 346 (448)
T PTZ00200 275 YRDKSVDLSEQELVNCDT--KSQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAK-DGKCVVSS--TKKVYIDSYLVAK-- 346 (448)
T ss_pred hcCCCeecCHHHHhhccC--ccCCCCCCcHHHHHHHHhhc-CccccccCCCCCC-CCCCcCCC--CCeeEecceEecC--
Confidence 999999999999999986 47899999999999999876 9999999999998 88997642 3456788887664
Q ss_pred CHHHHHHHHHcCCeEEEEecC-ccccccCceEcCCCCCCCCeEEEEEEeeec-CCCceEEEEEcCCCCCCCCCcEEEEEe
Q 043883 236 DEESLLKAVANQPVSVAIDAS-ALQFYSGGVFNGYCETFLNHGVTAVGYGTS-EEGIKYWLIKNSWGQDWGEDGYFRLQR 313 (348)
Q Consensus 236 ~~~~lk~~l~~GPV~v~i~~~-~f~~Y~~Giy~~~c~~~~~Hav~iVGyg~~-~~g~~yWiikNSWG~~WGe~GY~~i~~ 313 (348)
+.+.|++++.+|||+|+|.++ +|++|++|||+++|+..++|||+|||||.+ ++|.+|||||||||++|||+|||||+|
T Consensus 347 ~~~~l~~~l~~GPV~v~i~~~~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r 426 (448)
T PTZ00200 347 GKDVLNKSLVISPTVVYIAVSRELLKYKSGVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLER 426 (448)
T ss_pred HHHHHHHHHhcCCEEEEeecccccccCCCCccccccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEe
Confidence 456677777789999999998 999999999998898889999999999964 468899999999999999999999999
Q ss_pred cCCCCCCccccccccceee
Q 043883 314 DIDQPQGQCGIAMFASFPV 332 (348)
Q Consensus 314 ~~~~~~~~Cgi~~~~~~p~ 332 (348)
+.. ..|.|||++.+.||+
T Consensus 427 ~~~-g~n~CGI~~~~~~P~ 444 (448)
T PTZ00200 427 TNE-GTDKCGILTVGLTPV 444 (448)
T ss_pred CCC-CCCcCCccccceeeE
Confidence 753 247899999999998
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-65 Score=487.68 Aligned_cols=279 Identities=43% Similarity=0.748 Sum_probs=240.3
Q ss_pred HHHhCCccCChHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEcccCCCCCHHHHHHhhcCcCCCCCcccccCCCCccc
Q 043883 38 KAQYGRTYKESAENSKRFEIFKDNLVAVERFNNAAIGNRSYTLRLNKFADLTPQEFIASQTGFKMSDHSSSLKANGTPFL 117 (348)
Q Consensus 38 ~~~~~k~Y~s~~E~~~R~~iF~~n~~~I~~~N~~~~~~~s~~~g~N~FsD~t~eEf~~~~~~~~~~~~~~~~~~~~~~~~ 117 (348)
+.+|.+.|.+..|+..|+.+|.+|++.|+.||.. ...+|++++|+|+|+|.+|+++.+.+.+++... .......
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~--~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~----~~~~~~~ 103 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLK--YVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIK----RDKFTEK 103 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhh--hceeeeeccccccccchHHHHHhhccccCcccc----ccccccc
Confidence 6777788876788999999999999999999997 478999999999999999999988766544320 1000011
Q ss_pred cCCCCCCCceecccCC-CCCcccccccc-------HHHHHHHHHHHHcC-CCcCCCHHHHHhhcCCCCCCCCCCCchhHH
Q 043883 118 YKSSQVPPSVNWIEKG-AVTPVKYQGQC-------AVAAVEGINAIKIN-RLVSLSEQQLVDCATNDNNNGCYGGFMDDA 188 (348)
Q Consensus 118 ~~~~~lP~~~Dwr~~g-~v~pv~dQg~C-------a~~~~e~~~~i~~~-~~~~lS~q~l~dC~~~~~~~gC~GG~~~~a 188 (348)
....++|++||||+++ .++||||||.| ++++||++++|+++ .++.||+|||+||+.. ++.||.||++..|
T Consensus 104 ~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~-~~~GC~GG~~~~A 182 (325)
T KOG1543|consen 104 LDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGE-CGDGCNGGEPKNA 182 (325)
T ss_pred cchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCC-CCCCcCCCCHHHH
Confidence 1116899999999996 55569999977 78899999999999 8999999999999986 7889999999999
Q ss_pred HHHHHHcCCCCC-CCcccccCCcCCCCCCcccCCccEEEeeeEecCCCCHHHHHHHHH-cCCeEEEEecC-ccccccCce
Q 043883 189 FKYIIQNKGITN-DAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESLLKAVA-NQPVSVAIDAS-ALQFYSGGV 265 (348)
Q Consensus 189 ~~~~~~~~Gi~~-e~~yPY~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~lk~~l~-~GPV~v~i~~~-~f~~Y~~Gi 265 (348)
++|+.++ |+++ +.+|||.+. .+.|..... ...+.+.++..++. ++++|+++|+ +|||+|+|+++ +|++|++||
T Consensus 183 ~~yi~~~-G~~t~~~~Ypy~~~-~~~C~~~~~-~~~~~~~~~~~~~~-~e~~i~~~v~~~GPv~v~~~a~~~F~~Y~~GV 258 (325)
T KOG1543|consen 183 FKYIKKN-GGVTECENYPYIGK-DGTCKSNKK-DKTVTIKGFYNVPA-NEEAIAEAVAKNGPVSVAIDAYEDFSLYKGGV 258 (325)
T ss_pred HHHHHHh-CCCCCCcCCCCcCC-CCCccCCCc-cceeEeeeeeecCc-CHHHHHHHHHhcCCeEEEEeehhhhhhccCce
Confidence 9999998 5555 999999998 889998743 56778888888885 5999999999 79999999999 999999999
Q ss_pred EcCCCCC--CCCeEEEEEEeeecCCCceEEEEEcCCCCCCCCCcEEEEEecCCCCCCccccccccce-ee
Q 043883 266 FNGYCET--FLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASF-PV 332 (348)
Q Consensus 266 y~~~c~~--~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WGe~GY~~i~~~~~~~~~~Cgi~~~~~~-p~ 332 (348)
|.++|.. .++|||+|||||+ .++.+|||||||||+.|||+|||||.|+.+ .|+|++.++| |+
T Consensus 259 y~~~~~~~~~~~Hav~iVGyG~-~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~----~~~I~~~~~~~p~ 323 (325)
T KOG1543|consen 259 YAEEKGDDKEGDHAVLIVGYGT-GDGVDYWIVKNSWGTDWGEKGYFRIARGVN----KCGIASEASYGPI 323 (325)
T ss_pred EeCCCCCCCCCCceEEEEEEcC-CCCceeEEEEcCCCCCcccCceEEEecCCC----chhhhcccccCCC
Confidence 9997544 5999999999999 788999999999999999999999999975 5999999999 65
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=3.5e-53 Score=389.08 Aligned_cols=202 Identities=34% Similarity=0.661 Sum_probs=172.0
Q ss_pred CCCceecccCC----CCCcccccccc-------HHHHHHHHHHHHcCC------CcCCCHHHHHhhcCCCCCCCCCCCch
Q 043883 123 VPPSVNWIEKG----AVTPVKYQGQC-------AVAAVEGINAIKINR------LVSLSEQQLVDCATNDNNNGCYGGFM 185 (348)
Q Consensus 123 lP~~~Dwr~~g----~v~pv~dQg~C-------a~~~~e~~~~i~~~~------~~~lS~q~l~dC~~~~~~~gC~GG~~ 185 (348)
||++||||+.+ .|+||||||.| +++++|++++|++++ .+.||+|||+||+. .+.||+||++
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~--~~~GC~GG~~ 78 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQ--YSQGCDGGFP 78 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcC--CCCCCCCCCH
Confidence 79999999998 99999999987 677899999998876 68999999999986 3789999999
Q ss_pred hHHHHHHHHcCCCCCCCcccccC-CcCCCCCCcccCCccEEEeeeEecC----CCCHHHHHHHHH-cCCeEEEEecC-cc
Q 043883 186 DDAFKYIIQNKGITNDAVYSYEG-MSTGICDSIKAEDHAAQITNYEDVP----PNDEESLLKAVA-NQPVSVAIDAS-AL 258 (348)
Q Consensus 186 ~~a~~~~~~~~Gi~~e~~yPY~~-~~~~~C~~~~~~~~~~~i~~~~~v~----~~~~~~lk~~l~-~GPV~v~i~~~-~f 258 (348)
..|++|+.+. |+++|++|||.. . .+.|.........+++..|..+. ..++++||++|+ +|||+|+|++. +|
T Consensus 79 ~~a~~~~~~~-Gi~~e~~yPY~~~~-~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~~~F 156 (243)
T cd02621 79 FLVGKFAEDF-GIVTEDYFPYTADD-DRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDF 156 (243)
T ss_pred HHHHHHHHhc-CcCCCceeCCCCCC-CCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEecccc
Confidence 9999999876 999999999998 5 77897642122334445554442 247899999998 79999999998 99
Q ss_pred ccccCceEcCC-----CCC---------CCCeEEEEEEeeecC-CCceEEEEEcCCCCCCCCCcEEEEEecCCCCCCccc
Q 043883 259 QFYSGGVFNGY-----CET---------FLNHGVTAVGYGTSE-EGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCG 323 (348)
Q Consensus 259 ~~Y~~Giy~~~-----c~~---------~~~Hav~iVGyg~~~-~g~~yWiikNSWG~~WGe~GY~~i~~~~~~~~~~Cg 323 (348)
++|++|||+.+ |.. .++|||+|||||++. +|.+|||||||||++|||+|||||+|+. |.||
T Consensus 157 ~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~----~~cg 232 (243)
T cd02621 157 DFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGT----NECG 232 (243)
T ss_pred cccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCC----cccC
Confidence 99999999874 642 479999999999864 4899999999999999999999999985 5699
Q ss_pred cccccceee
Q 043883 324 IAMFASFPV 332 (348)
Q Consensus 324 i~~~~~~p~ 332 (348)
|++.+.+..
T Consensus 233 i~~~~~~~~ 241 (243)
T cd02621 233 IESQAVFAY 241 (243)
T ss_pred cccceEeec
Confidence 999987765
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=1.2e-52 Score=384.52 Aligned_cols=203 Identities=28% Similarity=0.623 Sum_probs=173.1
Q ss_pred CCCceecccCC---CCCcccccc---cc-------HHHHHHHHHHHHcC---CCcCCCHHHHHhhcCCCCCCCCCCCchh
Q 043883 123 VPPSVNWIEKG---AVTPVKYQG---QC-------AVAAVEGINAIKIN---RLVSLSEQQLVDCATNDNNNGCYGGFMD 186 (348)
Q Consensus 123 lP~~~Dwr~~g---~v~pv~dQg---~C-------a~~~~e~~~~i~~~---~~~~lS~q~l~dC~~~~~~~gC~GG~~~ 186 (348)
||++||||+++ +|+|||||| .| +++++|+++.|+++ ..+.||+|||+||+. +.||+||++.
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~---~~gC~GG~~~ 77 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG---GGSCHGGDPG 77 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC---CCCccCcCHH
Confidence 79999999987 899999997 67 67789999988875 357899999999986 6899999999
Q ss_pred HHHHHHHHcCCCCCCCcccccCCcCCCCCCcc--------------cCCccEEEeeeEecCCCCHHHHHHHHH-cCCeEE
Q 043883 187 DAFKYIIQNKGITNDAVYSYEGMSTGICDSIK--------------AEDHAAQITNYEDVPPNDEESLLKAVA-NQPVSV 251 (348)
Q Consensus 187 ~a~~~~~~~~Gi~~e~~yPY~~~~~~~C~~~~--------------~~~~~~~i~~~~~v~~~~~~~lk~~l~-~GPV~v 251 (348)
.|++|+.++ |+++|++|||... .+.|.... .....+++++|..++ ++++||++|. +|||+|
T Consensus 78 ~a~~~~~~~-Gl~~e~~yPY~~~-~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v 153 (239)
T cd02698 78 GVYEYAHKH-GIPDETCNPYQAK-DGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISC 153 (239)
T ss_pred HHHHHHHHc-CcCCCCeeCCcCC-CCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEE
Confidence 999999886 9999999999886 65664210 012346778887775 6888999987 899999
Q ss_pred EEecC-ccccccCceEcCC-CCCCCCeEEEEEEeeecCCCceEEEEEcCCCCCCCCCcEEEEEecC-CCCCCcccccccc
Q 043883 252 AIDAS-ALQFYSGGVFNGY-CETFLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDI-DQPQGQCGIAMFA 328 (348)
Q Consensus 252 ~i~~~-~f~~Y~~Giy~~~-c~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WGe~GY~~i~~~~-~~~~~~Cgi~~~~ 328 (348)
+|.+. +|+.|++|||+.+ |...++|||+|||||++++|++|||||||||++|||+|||||+|+. ....|+|||++.+
T Consensus 154 ~i~~~~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~ 233 (239)
T cd02698 154 GIMATEALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDC 233 (239)
T ss_pred EEEecccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccce
Confidence 99999 9999999999885 5566899999999998644999999999999999999999999997 1224679999999
Q ss_pred ceee
Q 043883 329 SFPV 332 (348)
Q Consensus 329 ~~p~ 332 (348)
.|+.
T Consensus 234 ~~~~ 237 (239)
T cd02698 234 AWAD 237 (239)
T ss_pred EEEe
Confidence 9987
No 8
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=1.2e-51 Score=377.26 Aligned_cols=197 Identities=34% Similarity=0.655 Sum_probs=165.6
Q ss_pred CCceecccC--CCC--Ccccccccc-------HHHHHHHHHHHHcC--CCcCCCHHHHHhhcCCCCCCCCCCCchhHHHH
Q 043883 124 PPSVNWIEK--GAV--TPVKYQGQC-------AVAAVEGINAIKIN--RLVSLSEQQLVDCATNDNNNGCYGGFMDDAFK 190 (348)
Q Consensus 124 P~~~Dwr~~--g~v--~pv~dQg~C-------a~~~~e~~~~i~~~--~~~~lS~q~l~dC~~~~~~~gC~GG~~~~a~~ 190 (348)
|++||||++ +++ +||+|||.| +++++|+++.|+++ +.+.||+|||+||+.. ++.||+||++..||+
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~-~~~gC~GG~~~~a~~ 79 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG-CGDGCNGGYPDAAWK 79 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC-CCCCCCCCCHHHHHH
Confidence 899999997 554 599999987 67889999999888 7789999999999864 478999999999999
Q ss_pred HHHHcCCCCCCCcccccCCcCCC------------------CCCccc---CCccEEEeeeEecCCCCHHHHHHHHH-cCC
Q 043883 191 YIIQNKGITNDAVYSYEGMSTGI------------------CDSIKA---EDHAAQITNYEDVPPNDEESLLKAVA-NQP 248 (348)
Q Consensus 191 ~~~~~~Gi~~e~~yPY~~~~~~~------------------C~~~~~---~~~~~~i~~~~~v~~~~~~~lk~~l~-~GP 248 (348)
|++++ |+++|++|||.+. ... |..... ....+++..+..+. .++++||++|+ +||
T Consensus 80 ~i~~~-G~~~e~~yPY~~~-~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GP 156 (236)
T cd02620 80 YLTTT-GVVTGGCQPYTIP-PCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGP 156 (236)
T ss_pred HHHhc-CCCcCCEecCcCC-CCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCC
Confidence 99986 9999999999876 332 432210 11234556666665 47899999998 899
Q ss_pred eEEEEecC-ccccccCceEcCCCCC-CCCeEEEEEEeeecCCCceEEEEEcCCCCCCCCCcEEEEEecCCCCCCcccccc
Q 043883 249 VSVAIDAS-ALQFYSGGVFNGYCET-FLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAM 326 (348)
Q Consensus 249 V~v~i~~~-~f~~Y~~Giy~~~c~~-~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WGe~GY~~i~~~~~~~~~~Cgi~~ 326 (348)
|+|+|.+. +|+.|++|||+..|+. .++|||+|||||++ +|.+|||||||||++|||+|||||+|+. |.|||++
T Consensus 157 v~v~i~~~~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~-~g~~YWivrNSWG~~WGe~Gy~ri~~~~----~~cgi~~ 231 (236)
T cd02620 157 VQAAFTVYEDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVE-NGVPYWLAANSWGTDWGENGYFRILRGS----NECGIES 231 (236)
T ss_pred eEEEEEechhhhhcCCcEEeecCCCCcCCeEEEEEEEecc-CCeeEEEEEeCCCCCCCCCcEEEEEccC----ccccccc
Confidence 99999998 9999999999876654 46999999999985 8899999999999999999999999985 5799999
Q ss_pred ccc
Q 043883 327 FAS 329 (348)
Q Consensus 327 ~~~ 329 (348)
.++
T Consensus 232 ~~~ 234 (236)
T cd02620 232 EVV 234 (236)
T ss_pred cee
Confidence 875
No 9
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=3.8e-51 Score=366.97 Aligned_cols=199 Identities=57% Similarity=1.046 Sum_probs=178.4
Q ss_pred CCceecccCCCCCcccccccc-------HHHHHHHHHHHHcCCCcCCCHHHHHhhcCCCCCCCCCCCchhHHHHHHHHcC
Q 043883 124 PPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQNK 196 (348)
Q Consensus 124 P~~~Dwr~~g~v~pv~dQg~C-------a~~~~e~~~~i~~~~~~~lS~q~l~dC~~~~~~~gC~GG~~~~a~~~~~~~~ 196 (348)
|++||||+.+.++||+|||.| +++++|++++++++....||+|+|++|... .+.||.||++..|++++.+.
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~-~~~gC~GG~~~~a~~~~~~~- 78 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS-GNNGCNGGNPDNAFEYVKNG- 78 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC-CCCCCCCCCHHHhHHHHHHC-
Confidence 889999999999999999876 677899999999998899999999999874 47899999999999998875
Q ss_pred CCCCCCcccccCCcCCCCCCcccCCccEEEeeeEecCCCCHHHHHHHHH-cCCeEEEEecC-ccccccCceEcCC-C-CC
Q 043883 197 GITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESLLKAVA-NQPVSVAIDAS-ALQFYSGGVFNGY-C-ET 272 (348)
Q Consensus 197 Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~lk~~l~-~GPV~v~i~~~-~f~~Y~~Giy~~~-c-~~ 272 (348)
|+++|++|||... ...|... ......++.+|..++..++++||++|+ +|||+++|.+. +|+.|++|||..+ | ..
T Consensus 79 Gi~~e~~yPY~~~-~~~C~~~-~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~~~~~~~ 156 (210)
T cd02248 79 GLASESDYPYTGK-DGTCKYN-SSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSGPCCSNT 156 (210)
T ss_pred CcCccccCCccCC-CCCccCC-CCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeCCCCCCC
Confidence 9999999999987 7889765 335678999999998777899999998 79999999999 9999999999885 4 35
Q ss_pred CCCeEEEEEEeeecCCCceEEEEEcCCCCCCCCCcEEEEEecCCCCCCcccccccccee
Q 043883 273 FLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFP 331 (348)
Q Consensus 273 ~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WGe~GY~~i~~~~~~~~~~Cgi~~~~~~p 331 (348)
.++|||+|||||++ .+.+|||||||||++||++|||||+++. |.|||++.+.||
T Consensus 157 ~~~Hav~iVGy~~~-~~~~ywiv~NSWG~~WG~~Gy~~i~~~~----~~cgi~~~~~~~ 210 (210)
T cd02248 157 NLNHAVLLVGYGTE-NGVDYWIVKNSWGTSWGEKGYIRIARGS----NLCGIASYASYP 210 (210)
T ss_pred cCCEEEEEEEEeec-CCceEEEEEcCCCCccccCcEEEEEcCC----CccCceeeeecC
Confidence 67999999999985 6889999999999999999999999985 569999988876
No 10
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=1.7e-49 Score=398.56 Aligned_cols=208 Identities=28% Similarity=0.519 Sum_probs=171.8
Q ss_pred CCCCCceecccC----CCCCcccccccc-------HHHHHHHHHHHHcCC-----C-----cCCCHHHHHhhcCCCCCCC
Q 043883 121 SQVPPSVNWIEK----GAVTPVKYQGQC-------AVAAVEGINAIKINR-----L-----VSLSEQQLVDCATNDNNNG 179 (348)
Q Consensus 121 ~~lP~~~Dwr~~----g~v~pv~dQg~C-------a~~~~e~~~~i~~~~-----~-----~~lS~q~l~dC~~~~~~~g 179 (348)
.+||++||||+. +.++||+|||.| +++++|++++|++++ . ..||+|+|+||+. .+.|
T Consensus 379 ~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~--~nqG 456 (693)
T PTZ00049 379 DELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSF--YDQG 456 (693)
T ss_pred ccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCC--CCCC
Confidence 589999999985 679999999987 677889999998643 1 2799999999986 4889
Q ss_pred CCCCchhHHHHHHHHcCCCCCCCcccccCCcCCCCCCcccC--------------------------------------C
Q 043883 180 CYGGFMDDAFKYIIQNKGITNDAVYSYEGMSTGICDSIKAE--------------------------------------D 221 (348)
Q Consensus 180 C~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~C~~~~~~--------------------------------------~ 221 (348)
|+||++..|++|+++. ||++|++|||++. .+.|+..... .
T Consensus 457 C~GG~~~~A~kya~~~-GI~tEscYPY~a~-~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (693)
T PTZ00049 457 CNGGFPYLVSKMAKLQ-GIPLDKVFPYTAT-EQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEP 534 (693)
T ss_pred cCCCcHHHHHHHHHHC-CCCcCCccCCcCC-CCCCCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999876 9999999999987 7778542110 1
Q ss_pred ccEEEeeeEecC-------CCCHHHHHHHHH-cCCeEEEEecC-ccccccCceEcC-------CCCC-------------
Q 043883 222 HAAQITNYEDVP-------PNDEESLLKAVA-NQPVSVAIDAS-ALQFYSGGVFNG-------YCET------------- 272 (348)
Q Consensus 222 ~~~~i~~~~~v~-------~~~~~~lk~~l~-~GPV~v~i~~~-~f~~Y~~Giy~~-------~c~~------------- 272 (348)
.++.++.|..+. ..++++||++|+ +|||+|+|++. +|++|++|||+. .|..
T Consensus 535 ~r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G 614 (693)
T PTZ00049 535 ARWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITG 614 (693)
T ss_pred cceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCccccccccccccc
Confidence 124456666663 147899999998 79999999999 999999999985 2742
Q ss_pred --CCCeEEEEEEeeecC-CCc--eEEEEEcCCCCCCCCCcEEEEEecCCCCCCccccccccceeeecCC
Q 043883 273 --FLNHGVTAVGYGTSE-EGI--KYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPVSKES 336 (348)
Q Consensus 273 --~~~Hav~iVGyg~~~-~g~--~yWiikNSWG~~WGe~GY~~i~~~~~~~~~~Cgi~~~~~~p~~~~~ 336 (348)
.++|||+|||||.++ +|. +|||||||||++||++|||||+||. |.|||++.+.|+.++-.
T Consensus 615 ~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~----N~CGIEs~a~~~~pd~~ 679 (693)
T PTZ00049 615 WEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGK----NFSGIESQSLFIEPDFS 679 (693)
T ss_pred cccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCC----CccCCccceeEEeeecc
Confidence 369999999999742 463 7999999999999999999999996 57999999999985543
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=2.2e-49 Score=393.88 Aligned_cols=202 Identities=23% Similarity=0.465 Sum_probs=168.8
Q ss_pred CCCCCceecccCC---CCCccccccc---c-------HHHHHHHHHHHHcC------CCcCCCHHHHHhhcCCCCCCCCC
Q 043883 121 SQVPPSVNWIEKG---AVTPVKYQGQ---C-------AVAAVEGINAIKIN------RLVSLSEQQLVDCATNDNNNGCY 181 (348)
Q Consensus 121 ~~lP~~~Dwr~~g---~v~pv~dQg~---C-------a~~~~e~~~~i~~~------~~~~lS~q~l~dC~~~~~~~gC~ 181 (348)
.+||++||||++| +|+||||||. | +++++|++++|+++ +.+.||+|+|+||+. .+.||+
T Consensus 203 ~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~--~n~GCd 280 (548)
T PTZ00364 203 DPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQ--YGQGCA 280 (548)
T ss_pred cCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccC--CCCCCC
Confidence 5699999999987 7999999999 9 67889999999883 468999999999986 378999
Q ss_pred CCchhHHHHHHHHcCCCCCCCcc--cccCCcCC---CCCCcccCCccEEEe------eeEecCCCCHHHHHHHHH-cCCe
Q 043883 182 GGFMDDAFKYIIQNKGITNDAVY--SYEGMSTG---ICDSIKAEDHAAQIT------NYEDVPPNDEESLLKAVA-NQPV 249 (348)
Q Consensus 182 GG~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~~---~C~~~~~~~~~~~i~------~~~~v~~~~~~~lk~~l~-~GPV 249 (348)
||++..|++|+.++ ||++|++| ||.+. ++ .|.... ....++++ +|..+. .++++|+.+|+ +|||
T Consensus 281 GG~p~~A~~yi~~~-GI~tE~dY~~PY~~~-dg~~~~Ck~~~-~~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~GPV 356 (548)
T PTZ00364 281 GGFPEEVGKFAETF-GILTTDSYYIPYDSG-DGVERACKTRR-PSRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHGPV 356 (548)
T ss_pred CCcHHHHHHHHHhC-CcccccccCCCCCCC-CCCCCCCCCCc-ccceeeeeeeEEecceeecC-CcHHHHHHHHHHcCCe
Confidence 99999999999876 99999999 99876 44 586542 23333343 444444 47889999998 7999
Q ss_pred EEEEecC-ccccccCceEcC---------CC-----------CCCCCeEEEEEEeeecCCCceEEEEEcCCCC--CCCCC
Q 043883 250 SVAIDAS-ALQFYSGGVFNG---------YC-----------ETFLNHGVTAVGYGTSEEGIKYWLIKNSWGQ--DWGED 306 (348)
Q Consensus 250 ~v~i~~~-~f~~Y~~Giy~~---------~c-----------~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~--~WGe~ 306 (348)
+|+|+++ +|+.|++|||.+ .| ...+||||+|||||++++|.+|||||||||+ +|||+
T Consensus 357 sVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~ 436 (548)
T PTZ00364 357 PASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDG 436 (548)
T ss_pred EEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccC
Confidence 9999999 999999999852 12 1347999999999986688999999999999 99999
Q ss_pred cEEEEEecCCCCCCccccccccceee
Q 043883 307 GYFRLQRDIDQPQGQCGIAMFASFPV 332 (348)
Q Consensus 307 GY~~i~~~~~~~~~~Cgi~~~~~~p~ 332 (348)
|||||+||. |.|||++.++...
T Consensus 437 GYfRI~RG~----N~CGIes~~v~~~ 458 (548)
T PTZ00364 437 GTRKIARGV----NAYNIESEVVVMY 458 (548)
T ss_pred CeEEEEcCC----Ccccccceeeeee
Confidence 999999996 5799999988443
No 12
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=4e-49 Score=354.94 Aligned_cols=204 Identities=43% Similarity=0.800 Sum_probs=172.7
Q ss_pred CCCceecccC-CCCCcccccccc-------HHHHHHHHHHHHc-CCCcCCCHHHHHhhcCCCCCCCCCCCchhHHHHHHH
Q 043883 123 VPPSVNWIEK-GAVTPVKYQGQC-------AVAAVEGINAIKI-NRLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKYII 193 (348)
Q Consensus 123 lP~~~Dwr~~-g~v~pv~dQg~C-------a~~~~e~~~~i~~-~~~~~lS~q~l~dC~~~~~~~gC~GG~~~~a~~~~~ 193 (348)
||++||||+. +.++||+|||.| +++++|++++++. ...+.||+|+|++|.. ..+.+|+||++..|+++++
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~-~~~~~c~gg~~~~a~~~~~ 79 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSN-KYNKGCDGGSPFDALKYIK 79 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHST-GTSSTTBBBEHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceecccccccccccccccccccccccc-ccccccccCcccccceeec
Confidence 7999999998 489999999865 5678999999998 7889999999999997 2467999999999999999
Q ss_pred HcCCCCCCCcccccCCcC-CCCCCcccCCccEEEeeeEecCCCCHHHHHHHHH-cCCeEEEEecC--ccccccCceEcCC
Q 043883 194 QNKGITNDAVYSYEGMST-GICDSIKAEDHAAQITNYEDVPPNDEESLLKAVA-NQPVSVAIDAS--ALQFYSGGVFNGY 269 (348)
Q Consensus 194 ~~~Gi~~e~~yPY~~~~~-~~C~~~~~~~~~~~i~~~~~v~~~~~~~lk~~l~-~GPV~v~i~~~--~f~~Y~~Giy~~~ 269 (348)
++.|+++|++|||... . ..|..........++..|..+...++++||++|. +|||+++|.+. +|..|++|||..+
T Consensus 80 ~~~Gi~~e~~~pY~~~-~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~ 158 (219)
T PF00112_consen 80 NNNGIVTEEDYPYNGN-ENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPP 158 (219)
T ss_dssp HHTSBEBTTTS--SSS-SSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECST
T ss_pred ccCccccccccccccc-ccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeecc
Confidence 8459999999999987 5 6887653222247889999998778999999999 69999999998 4999999999985
Q ss_pred -CCC-CCCeEEEEEEeeecCCCceEEEEEcCCCCCCCCCcEEEEEecCCCCCCccccccccceee
Q 043883 270 -CET-FLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332 (348)
Q Consensus 270 -c~~-~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WGe~GY~~i~~~~~~~~~~Cgi~~~~~~p~ 332 (348)
|.. .++|||+|||||++ .+++|||||||||++||++|||||+|+.+ ++|||++.++||+
T Consensus 159 ~~~~~~~~Hav~iVGy~~~-~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~---~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 159 DCSNESGGHAVLIVGYDDE-NGKGYWIVKNSWGTDWGDNGYFRISYDYN---NECGIESQAVYPI 219 (219)
T ss_dssp SSSSSSEEEEEEEEEEEEE-TTEEEEEEE-SBTTTSTBTTEEEEESSSS---SGGGTTSSEEEEE
T ss_pred ccccccccccccccccccc-cceeeEeeehhhCCccCCCeEEEEeeCCC---CcCccCceeeecC
Confidence 764 68999999999996 69999999999999999999999999974 4799999999996
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=1.1e-44 Score=316.37 Aligned_cols=161 Identities=57% Similarity=1.064 Sum_probs=140.7
Q ss_pred CCCceecccCCCCCcccccccc-------HHHHHHHHHHHHcCCCcCCCHHHHHhhcCCCCCCCCCCCchhHHHHHHHHc
Q 043883 123 VPPSVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQN 195 (348)
Q Consensus 123 lP~~~Dwr~~g~v~pv~dQg~C-------a~~~~e~~~~i~~~~~~~lS~q~l~dC~~~~~~~gC~GG~~~~a~~~~~~~ 195 (348)
||++||||+.++++||+|||.| +++++|+++++++++.+.||+|+|++|... ++.||.||++..|++|+.++
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~-~~~gC~GG~~~~a~~~~~~~ 79 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG-GNNGCNGGLPDNAFEYIKKN 79 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC-CCCCCCCcCHHHHHHHHHHc
Confidence 6999999999999999999977 677899999999998999999999999874 46799999999999999875
Q ss_pred CCCCCCCcccccCCcCCCCCCcccCCccEEEeeeEecCCCCHHHHHHHHHcCCeEEEEecCccccccCceEcC-CCCCC-
Q 043883 196 KGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPPNDEESLLKAVANQPVSVAIDASALQFYSGGVFNG-YCETF- 273 (348)
Q Consensus 196 ~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~i~~~~~v~~~~~~~lk~~l~~GPV~v~i~~~~f~~Y~~Giy~~-~c~~~- 273 (348)
.|+++|++|||.. ++.+.+.+|++|++|||+. +|...
T Consensus 80 ~Gi~~e~~~PY~~-----------------------------------------~~~~~~~~f~~Y~~Gi~~~~~~~~~~ 118 (174)
T smart00645 80 GGLETESCYPYTG-----------------------------------------SVAIDASDFQFYKSGIYDHPGCGSGT 118 (174)
T ss_pred CCcccccccCccc-----------------------------------------EEEEEcccccCCcCeEECCCCCCCCc
Confidence 5999999999964 4445445899999999988 48654
Q ss_pred CCeEEEEEEeeecCCCceEEEEEcCCCCCCCCCcEEEEEecCCCCCCcccccccc
Q 043883 274 LNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFA 328 (348)
Q Consensus 274 ~~Hav~iVGyg~~~~g~~yWiikNSWG~~WGe~GY~~i~~~~~~~~~~Cgi~~~~ 328 (348)
++|+|+|||||.+.+|++|||||||||+.||++|||||+|+.. |.|||+...
T Consensus 119 ~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~---~~c~i~~~~ 170 (174)
T smart00645 119 LDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKN---NECGIEASV 170 (174)
T ss_pred ccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCC---CccCceeee
Confidence 7999999999985478899999999999999999999999852 469996543
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=3.9e-41 Score=303.47 Aligned_cols=187 Identities=30% Similarity=0.467 Sum_probs=157.8
Q ss_pred ceecccCCCCCcccccccc-------HHHHHHHHHHHHcC--CCcCCCHHHHHhhcCCCC---CCCCCCCchhHHHH-HH
Q 043883 126 SVNWIEKGAVTPVKYQGQC-------AVAAVEGINAIKIN--RLVSLSEQQLVDCATNDN---NNGCYGGFMDDAFK-YI 192 (348)
Q Consensus 126 ~~Dwr~~g~v~pv~dQg~C-------a~~~~e~~~~i~~~--~~~~lS~q~l~dC~~~~~---~~gC~GG~~~~a~~-~~ 192 (348)
.+|||+.+ ++||+|||.| +++++|+++.+++. +.+.||+|+|++|..... ..||.||.+..++. ++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999988 9999999866 67889999999887 889999999999987532 37999999999998 77
Q ss_pred HHcCCCCCCCcccccCCcCCCCCCc---ccCCccEEEeeeEecCCCCHHHHHHHHH-cCCeEEEEecC-ccccccCceEc
Q 043883 193 IQNKGITNDAVYSYEGMSTGICDSI---KAEDHAAQITNYEDVPPNDEESLLKAVA-NQPVSVAIDAS-ALQFYSGGVFN 267 (348)
Q Consensus 193 ~~~~Gi~~e~~yPY~~~~~~~C~~~---~~~~~~~~i~~~~~v~~~~~~~lk~~l~-~GPV~v~i~~~-~f~~Y~~Giy~ 267 (348)
.++ |+++|++|||... ...|... .......++..|..+...++++||++|+ +|||+++|.+. .|..|++|+|.
T Consensus 80 ~~~-Gi~~e~~~Py~~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~~~~ 157 (223)
T cd02619 80 ALK-GIPPEEDYPYGAE-SDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIY 157 (223)
T ss_pred HHc-CCCccccCCCCCC-CCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcccchhcccCcccc
Confidence 665 9999999999987 6566432 1234568899999998777899999998 69999999999 99999999973
Q ss_pred -----C-CC-CCCCCeEEEEEEeeecC-CCceEEEEEcCCCCCCCCCcEEEEEecC
Q 043883 268 -----G-YC-ETFLNHGVTAVGYGTSE-EGIKYWLIKNSWGQDWGEDGYFRLQRDI 315 (348)
Q Consensus 268 -----~-~c-~~~~~Hav~iVGyg~~~-~g~~yWiikNSWG~~WGe~GY~~i~~~~ 315 (348)
. .| ...++|||+|||||++. .+++|||||||||+.||++||+||+++.
T Consensus 158 ~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 158 EEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred ccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 2 23 34579999999999852 2789999999999999999999999985
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=342.23 Aligned_cols=195 Identities=23% Similarity=0.433 Sum_probs=152.3
Q ss_pred CCcccccccc-------HHHHHHHHHHHHcCCCcCCCHHHHHhhcCCCCCCCCCCCchh-HHHHHHHHcCCCCCCCcccc
Q 043883 135 VTPVKYQGQC-------AVAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGCYGGFMD-DAFKYIIQNKGITNDAVYSY 206 (348)
Q Consensus 135 v~pv~dQg~C-------a~~~~e~~~~i~~~~~~~lS~q~l~dC~~~~~~~gC~GG~~~-~a~~~~~~~~Gi~~e~~yPY 206 (348)
..||||||.| +++++|++++|++++.+.||+|+|+||+..+++.||.||+.. .++.|+.+++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 4689999988 677899999999999999999999999975567899999755 55689888767999999999
Q ss_pred cCC-cCCCCCCccc-----------------CCccEEEeeeEecCCC----C----HHHHHHHHH-cCCeEEEEecCccc
Q 043883 207 EGM-STGICDSIKA-----------------EDHAAQITNYEDVPPN----D----EESLLKAVA-NQPVSVAIDASALQ 259 (348)
Q Consensus 207 ~~~-~~~~C~~~~~-----------------~~~~~~i~~~~~v~~~----~----~~~lk~~l~-~GPV~v~i~~~~f~ 259 (348)
.+. ..+.|+.... ......+.+|..+... + +++|+++|+ +|||+|+|++.+|+
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAsdf~ 703 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAENVL 703 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEeehHH
Confidence 852 1567874310 0112344566655431 1 468899998 79999999988888
Q ss_pred cc-cCceEcC-CCCC-CCCeEEEEEEeeec----CCCceEEEEEcCCCCCCCCCcEEEEEecCCCCCCccccccccceee
Q 043883 260 FY-SGGVFNG-YCET-FLNHGVTAVGYGTS----EEGIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASFPV 332 (348)
Q Consensus 260 ~Y-~~Giy~~-~c~~-~~~Hav~iVGyg~~----~~g~~yWiikNSWG~~WGe~GY~~i~~~~~~~~~~Cgi~~~~~~p~ 332 (348)
.| .+|||.. .|+. .++|||+|||||.+ ..+.+|||||||||+.|||+|||||+|.. .++|||.....+|+
T Consensus 704 ~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g---~n~CGin~i~t~~~ 780 (1004)
T PTZ00462 704 GYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYG---PSHCEDNFIHSVVI 780 (1004)
T ss_pred hhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCC---CCCCccchheeeee
Confidence 88 4898655 5874 57999999999973 13679999999999999999999999953 25799877665555
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=1.6e-41 Score=307.95 Aligned_cols=257 Identities=27% Similarity=0.487 Sum_probs=193.9
Q ss_pred HHHHHhcccccCCCcEEEE-cccCCCCCHHHHHHhhcCcCCCCCcccccCCCCccccCC-CCCCCceecccC--CCCCcc
Q 043883 63 VAVERFNNAAIGNRSYTLR-LNKFADLTPQEFIASQTGFKMSDHSSSLKANGTPFLYKS-SQVPPSVNWIEK--GAVTPV 138 (348)
Q Consensus 63 ~~I~~~N~~~~~~~s~~~g-~N~FsD~t~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lP~~~Dwr~~--g~v~pv 138 (348)
..|++.|. ++.+|.++ +.+|..||.++-.+..+|..++.....+..+-.. ...+ .+||+.||-|++ +++.|+
T Consensus 151 d~iE~in~---G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMNEi~~-~l~p~~~LPE~F~As~KWp~liH~p 226 (470)
T KOG1544|consen 151 DMIEAINQ---GNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMNMNEIYT-VLNPGEVLPEAFEASEKWPNLIHEP 226 (470)
T ss_pred HHHHHHhc---CCccccccchhhhhcccccccceeeecccCchhhhhhHHhHhh-ccCcccccchhhhhhhcCCccccCc
Confidence 47889997 47899886 6799999999988877887665443222111111 1223 689999999998 899999
Q ss_pred cccccc-------HHHHHHHHHHHHcC-C-CcCCCHHHHHhhcCCCCCCCCCCCchhHHHHHHHHcCCCCCCCcccccCC
Q 043883 139 KYQGQC-------AVAAVEGINAIKIN-R-LVSLSEQQLVDCATNDNNNGCYGGFMDDAFKYIIQNKGITNDAVYSYEGM 209 (348)
Q Consensus 139 ~dQg~C-------a~~~~e~~~~i~~~-~-~~~lS~q~l~dC~~~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~ 209 (348)
.|||+| +++....+.+|... + ...||+|+|++|... ...||.||+...|+-|+.+. |++...||||...
T Consensus 227 lDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h-~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~d 304 (470)
T KOG1544|consen 227 LDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTH-QQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGD 304 (470)
T ss_pred cccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhh-hhccCccCcccchheeeecc-cccccccccccCC
Confidence 999999 33334455666554 3 348999999999875 57899999999999999875 9999999999753
Q ss_pred ---cCCCCCCc------------------ccC-CccEEEeeeEecCCCCHHHHHHHHH-cCCeEEEEecC-ccccccCce
Q 043883 210 ---STGICDSI------------------KAE-DHAAQITNYEDVPPNDEESLLKAVA-NQPVSVAIDAS-ALQFYSGGV 265 (348)
Q Consensus 210 ---~~~~C~~~------------------~~~-~~~~~i~~~~~v~~~~~~~lk~~l~-~GPV~v~i~~~-~f~~Y~~Gi 265 (348)
+.+.|-.. ..+ ...++.+-=+.|. .+|++|++.|+ +|||.+.|.|. +|.+|++||
T Consensus 305 Q~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVS-SnE~eImkElM~NGPVQA~m~VHEDFF~YkgGi 383 (470)
T KOG1544|consen 305 QAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVS-SNEKEIMKELMENGPVQALMEVHEDFFLYKGGI 383 (470)
T ss_pred CCCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeecc-CCHHHHHHHHHhCCChhhhhhhhhhhhhhccce
Confidence 12334322 111 1234444444554 57888888887 99999999999 999999999
Q ss_pred EcCCCC---------CCCCeEEEEEEeeecC--C--CceEEEEEcCCCCCCCCCcEEEEEecCCCCCCccccccccce
Q 043883 266 FNGYCE---------TFLNHGVTAVGYGTSE--E--GIKYWLIKNSWGQDWGEDGYFRLQRDIDQPQGQCGIAMFASF 330 (348)
Q Consensus 266 y~~~c~---------~~~~Hav~iVGyg~~~--~--g~~yWiikNSWG~~WGe~GY~~i~~~~~~~~~~Cgi~~~~~~ 330 (348)
|.+... ....|+|.|.|||++. + ..+|||..||||+.|||+|||||.||+ |.|-|+++.+-
T Consensus 384 Y~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGv----NecdIEsfvIg 457 (470)
T KOG1544|consen 384 YSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGV----NECDIESFVIG 457 (470)
T ss_pred eeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccc----cchhhhHhhhh
Confidence 987421 1468999999999852 2 358999999999999999999999998 46999988653
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.1e-25 Score=204.68 Aligned_cols=191 Identities=24% Similarity=0.327 Sum_probs=127.5
Q ss_pred CCCCCceecccCCCCCccccccc---c----HHHHHHHHHHHHcCCCcCCCHHHHHhhcCCCCCCCC-----CCCchhHH
Q 043883 121 SQVPPSVNWIEKGAVTPVKYQGQ---C----AVAAVEGINAIKINRLVSLSEQQLVDCATNDNNNGC-----YGGFMDDA 188 (348)
Q Consensus 121 ~~lP~~~Dwr~~g~v~pv~dQg~---C----a~~~~e~~~~i~~~~~~~lS~q~l~dC~~~~~~~gC-----~GG~~~~a 188 (348)
..+|+.||||+.|.|+||||||+ | +++++|+.. +..+ ...+|+-.+..-.......+| +||....+
T Consensus 97 ~s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l-~~~~-~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~ 174 (372)
T COG4870 97 ASLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYL-NPES-AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMS 174 (372)
T ss_pred ccchhheeeeccCCcccccccCcccceEeeeehhhhhhee-cccc-cccccccchhhhcCCCccccCCCccccCCccccc
Confidence 45899999999999999999985 5 778888765 3222 345565554443322234444 37888888
Q ss_pred HHHHHHcCCCCCCCcccccCCcCCCCCCcccCCccEEEeeeEecCC----CCHHHHHHHHH-cCCeEEE--EecCccccc
Q 043883 189 FKYIIQNKGITNDAVYSYEGMSTGICDSIKAEDHAAQITNYEDVPP----NDEESLLKAVA-NQPVSVA--IDASALQFY 261 (348)
Q Consensus 189 ~~~~~~~~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~i~~~~~v~~----~~~~~lk~~l~-~GPV~v~--i~~~~f~~Y 261 (348)
..|+.+..|.+.+.+-||... ...|....+. ..++.....++. -+.-.+++++. .|-++.. |++..+...
T Consensus 175 ~a~l~e~sgpv~et~d~y~~~-s~~~~~~~p~--~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~~~~~~ 251 (372)
T COG4870 175 AAYLTEWSGPVYETDDPYSEN-SYFSPTNLPV--TKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGI 251 (372)
T ss_pred cccccccCCcchhhcCccccc-cccCCcCCch--hhccccceecccchhhhcccchHHHHhhhccccceeEEeccccccc
Confidence 888888889999999999887 5556553211 112222222321 12333667766 6655533 444433333
Q ss_pred cCceEcCCCCCCCCeEEEEEEeeec---------CCCceEEEEEcCCCCCCCCCcEEEEEecCC
Q 043883 262 SGGVFNGYCETFLNHGVTAVGYGTS---------EEGIKYWLIKNSWGQDWGEDGYFRLQRDID 316 (348)
Q Consensus 262 ~~Giy~~~c~~~~~Hav~iVGyg~~---------~~g~~yWiikNSWG~~WGe~GY~~i~~~~~ 316 (348)
.-+.|...-....+|||+||||++. +.|.+.||||||||++||++|||||++...
T Consensus 252 ~~~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya 315 (372)
T COG4870 252 CIPYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYA 315 (372)
T ss_pred ccCCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeec
Confidence 3344444333668999999999984 235679999999999999999999999864
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.81 E-value=1.4e-19 Score=177.15 Aligned_cols=78 Identities=26% Similarity=0.555 Sum_probs=64.9
Q ss_pred HHHHH----HHHHc-CCeEEEEecCccccccCceEcCC----------------------CCCCCCeEEEEEEeeecCCC
Q 043883 237 EESLL----KAVAN-QPVSVAIDASALQFYSGGVFNGY----------------------CETFLNHGVTAVGYGTSEEG 289 (348)
Q Consensus 237 ~~~lk----~~l~~-GPV~v~i~~~~f~~Y~~Giy~~~----------------------c~~~~~Hav~iVGyg~~~~g 289 (348)
.+.|+ ++|.. +||.++.++..|..|++||++.. |.+..+|||+|||||.+++|
T Consensus 294 ~d~l~~~~~~~L~~g~pV~~g~Dv~~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~~g 373 (437)
T cd00585 294 MDVLKKAAIAQLKDGEPVWFGCDVGKFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDEDG 373 (437)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEcChhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecCCC
Confidence 55555 45564 59999999997789999999653 23446999999999997667
Q ss_pred c-eEEEEEcCCCCCCCCCcEEEEEec
Q 043883 290 I-KYWLIKNSWGQDWGEDGYFRLQRD 314 (348)
Q Consensus 290 ~-~yWiikNSWG~~WGe~GY~~i~~~ 314 (348)
. .||+||||||+.||++||++|+++
T Consensus 374 ~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 374 KPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred CcceEEEEcccCCCCCCCcceehhHH
Confidence 6 699999999999999999999976
No 19
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.72 E-value=1.5e-17 Score=118.55 Aligned_cols=58 Identities=52% Similarity=1.004 Sum_probs=51.5
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEcccCCCCCHHHH
Q 043883 34 FEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFNNAAIGNRSYTLRLNKFADLTPQEF 93 (348)
Q Consensus 34 f~~f~~~~~k~Y~s~~E~~~R~~iF~~n~~~I~~~N~~~~~~~s~~~g~N~FsD~t~eEf 93 (348)
|++|+++|+|.|.+.+|+.+|+.+|.+|++.|++||++ +..+|++|+|+|||||++||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~--~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNAN--GNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHT--TSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC--CCCCeEEeCccccCcChhhC
Confidence 89999999999999999999999999999999999965 67899999999999999997
No 20
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.57 E-value=3e-15 Score=106.15 Aligned_cols=57 Identities=54% Similarity=0.958 Sum_probs=53.8
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEcccCCCCCHHH
Q 043883 34 FEQWKAQYGRTYKESAENSKRFEIFKDNLVAVERFNNAAIGNRSYTLRLNKFADLTPQE 92 (348)
Q Consensus 34 f~~f~~~~~k~Y~s~~E~~~R~~iF~~n~~~I~~~N~~~~~~~s~~~g~N~FsD~t~eE 92 (348)
|++|+.+|+|.|.+.+|+..|+.+|.+|++.|+.||+. +..+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~--~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKK--NDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc--CCCCeEecCcccccCCCCC
Confidence 78999999999999999999999999999999999987 5689999999999999986
No 21
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.37 E-value=1.9e-11 Score=120.12 Aligned_cols=78 Identities=28% Similarity=0.537 Sum_probs=57.7
Q ss_pred HHHHHHH----HHcC-CeEEEEecCccccccCceEcCCC----------------------CCCCCeEEEEEEeeecCCC
Q 043883 237 EESLLKA----VANQ-PVSVAIDASALQFYSGGVFNGYC----------------------ETFLNHGVTAVGYGTSEEG 289 (348)
Q Consensus 237 ~~~lk~~----l~~G-PV~v~i~~~~f~~Y~~Giy~~~c----------------------~~~~~Hav~iVGyg~~~~g 289 (348)
.+.|+++ |..| ||-.+-++..+..-+.||.+... .+..+|||+|||.+.+++|
T Consensus 295 id~lk~~~i~~Lk~G~~VwfgcDV~k~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g 374 (438)
T PF03051_consen 295 IDELKDAAIKSLKAGYPVWFGCDVGKFFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDG 374 (438)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEETTTTEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTS
T ss_pred HHHHHHHHHHHHHcCCcEEEeccCCccccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCC
Confidence 5556554 4467 99999999955566889886532 0124899999999997788
Q ss_pred c-eEEEEEcCCCCCCCCCcEEEEEec
Q 043883 290 I-KYWLIKNSWGQDWGEDGYFRLQRD 314 (348)
Q Consensus 290 ~-~yWiikNSWG~~WGe~GY~~i~~~ 314 (348)
. .+|+|+||||+..|.+||+.++..
T Consensus 375 ~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 375 KPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp SEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred CeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 6 599999999999999999999854
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=97.30 E-value=7.7e-05 Score=69.83 Aligned_cols=77 Identities=29% Similarity=0.498 Sum_probs=58.2
Q ss_pred CHHHHHHHH----HcC-CeEEEEecCccccccCceEcCCC-------C---------------CCCCeEEEEEEeeecCC
Q 043883 236 DEESLLKAV----ANQ-PVSVAIDASALQFYSGGVFNGYC-------E---------------TFLNHGVTAVGYGTSEE 288 (348)
Q Consensus 236 ~~~~lk~~l----~~G-PV~v~i~~~~f~~Y~~Giy~~~c-------~---------------~~~~Hav~iVGyg~~~~ 288 (348)
+.+.+|++. ..| ||=.+-++.-+..=+.||.+..- + +-..|||+|.|.+.+++
T Consensus 296 ~me~lkkl~~~q~qagetVwFG~dvgq~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~~ 375 (444)
T COG3579 296 DMERLKKLAIKQMQAGETVWFGCDVGQLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDET 375 (444)
T ss_pred cHHHHHHHHHHHHhcCCcEEeecCchhhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhccccccC
Confidence 466666653 246 89888888777777778764310 0 01379999999999877
Q ss_pred Cce-EEEEEcCCCCCCCCCcEEEEE
Q 043883 289 GIK-YWLIKNSWGQDWGEDGYFRLQ 312 (348)
Q Consensus 289 g~~-yWiikNSWG~~WGe~GY~~i~ 312 (348)
|.+ -|.|.||||.+=|.+|||-++
T Consensus 376 g~p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 376 GNPLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred CCceeeEeecccccccCCCceEeeh
Confidence 654 699999999999999999876
No 23
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=96.23 E-value=0.0051 Score=40.19 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=22.3
Q ss_pred HHHHHHhcccccCCCcEEEEcccCCCCCHHHHHHhhcCcC
Q 043883 62 LVAVERFNNAAIGNRSYTLRLNKFADLTPQEFIASQTGFK 101 (348)
Q Consensus 62 ~~~I~~~N~~~~~~~s~~~g~N~FsD~t~eEf~~~~~~~~ 101 (348)
-++|+.+|+. +.+|++|.| |.+.|.+.++.+ +|..
T Consensus 3 de~I~~IN~~---~~tWkAG~N-F~~~~~~~ik~L-lGv~ 37 (41)
T PF08127_consen 3 DEFIDYINSK---NTTWKAGRN-FENTSIEYIKRL-LGVL 37 (41)
T ss_dssp HHHHHHHHHC---T-SEEE-----SSB-HHHHHHC-S-B-
T ss_pred HHHHHHHHcC---CCcccCCCC-CCCCCHHHHHHH-cCCC
Confidence 3689999987 789999999 899999998775 4544
No 24
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=94.45 E-value=0.17 Score=41.26 Aligned_cols=56 Identities=21% Similarity=0.537 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHcC-CeEEEEecC-ccccccCceEcCCCCCCCCeEEEEEEeeecCCCceEEEEEcCC
Q 043883 235 NDEESLLKAVANQ-PVSVAIDAS-ALQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYWLIKNSW 299 (348)
Q Consensus 235 ~~~~~lk~~l~~G-PV~v~i~~~-~f~~Y~~Giy~~~c~~~~~Hav~iVGyg~~~~g~~yWiikNSW 299 (348)
.+.+.|++.|..| ||.+.+... .-. .++.+. ....+|.|+|+||+.+ + +++|-.+|
T Consensus 87 ~~~~~i~~~i~~G~Pvi~~~~~~~~~~--~~~~~~---~~~~~H~vvi~Gy~~~--~--~~~v~DP~ 144 (144)
T PF13529_consen 87 ASFDDIKQEIDAGRPVIVSVNSGWRPP--NGDGYD---GTYGGHYVVIIGYDED--G--YVYVNDPW 144 (144)
T ss_dssp S-HHHHHHHHHTT--EEEEEETTSS----TTEEEE---E-TTEEEEEEEEE-SS--E---EEEE-TT
T ss_pred CcHHHHHHHHHCCCcEEEEEEcccccC--CCCCcC---CCcCCEEEEEEEEeCC--C--EEEEeCCC
Confidence 4678999999977 999998643 110 111111 2347999999999963 3 78888776
No 25
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=87.21 E-value=1.6 Score=41.23 Aligned_cols=55 Identities=24% Similarity=0.313 Sum_probs=35.1
Q ss_pred HHHHHHHHHcC-CeEEEEecCccccccCceEcCCCCCCCCeEEEEEEeeecCCCceEEEEEc
Q 043883 237 EESLLKAVANQ-PVSVAIDASALQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYWLIKN 297 (348)
Q Consensus 237 ~~~lk~~l~~G-PV~v~i~~~~f~~Y~~Giy~~~c~~~~~Hav~iVGyg~~~~g~~yWiikN 297 (348)
.+.|+++|..| ||.+.++.+.+ -|...-| .....+|.|+|+||++ .+..+.++-.
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~~l-py~~~~~---~~~~~~H~i~v~G~d~--~~~~~~v~D~ 133 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMYYL-PYRPNYY---KKHHADHYIVVYGYDE--EEDVFYVSDP 133 (317)
T ss_pred HHHHHHHHhCCCceEEEeccccC-CCCcccc---ccccCCcEEEEEEEeC--CCCEEEEEcC
Confidence 44677778877 99999887522 1222111 1234689999999996 3445777644
No 26
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=84.04 E-value=3.2 Score=35.88 Aligned_cols=64 Identities=17% Similarity=0.316 Sum_probs=39.6
Q ss_pred CHHHHHHHHH-cCCeEEEEecCccccccCceEcCCCCCCCCeEEEEEEeeecCCCceEEEEEcCCCCCCCCCcEEEEEec
Q 043883 236 DEESLLKAVA-NQPVSVAIDASALQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFRLQRD 314 (348)
Q Consensus 236 ~~~~lk~~l~-~GPV~v~i~~~~f~~Y~~Giy~~~c~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WGe~GY~~i~~~ 314 (348)
+.+++++.+. +-|+.+.....+ + .-+...+||++||||-.-.+|.++.++=|=|- ++++-++..
T Consensus 90 s~~eV~~~~~~nk~i~i~~~~v~-----~-----~~~~~~gHAlavvGya~~~~g~~~y~~WNPW~-----~~~~~~sa~ 154 (175)
T PF05543_consen 90 SFDEVKKLIDNNKGIAILADRVE-----Q-----TNGPHAGHALAVVGYAKPNNGQKTYYFWNPWW-----NDVMIQSAK 154 (175)
T ss_dssp -HHHHHHHHHTT-EEEEEEEETT-----S-----CTTB--EEEEEEEEEEEETTSEEEEEEE-TT------SS-EEEETT
T ss_pred CHHHHHHHHHcCCCeEEEecccc-----c-----CCCCccceeEEEEeeeecCCCCeEEEEeCCcc-----CCcEEEecC
Confidence 5778888888 568777654211 0 12235799999999987557899999988884 345554433
No 27
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.58 E-value=3.7 Score=35.70 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=37.7
Q ss_pred EecCCCCHHHHHHHHHcC-CeEEEEecCccccccCceEcCCCCCCCCeEEEEEEeeecCCCceEEEEEcCCC
Q 043883 230 EDVPPNDEESLLKAVANQ-PVSVAIDASALQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYWLIKNSWG 300 (348)
Q Consensus 230 ~~v~~~~~~~lk~~l~~G-PV~v~i~~~~f~~Y~~Giy~~~c~~~~~Hav~iVGyg~~~~g~~yWiikNSWG 300 (348)
..++..+..+|+..|..| ||.+-... |.. ..-|+|+|+||++. ++..-++||
T Consensus 116 ~d~tGksl~~ik~ql~kg~PV~iw~T~--~~~------------~s~H~v~itgyDk~-----n~yynDpyG 168 (195)
T COG4990 116 VDLTGKSLSDIKGQLLKGRPVVIWVTN--FHS------------YSIHSVLITGYDKY-----NIYYNDPYG 168 (195)
T ss_pred ccCcCCcHHHHHHHHhcCCcEEEEEec--ccc------------cceeeeEeeccccc-----ceEeccccc
Confidence 345567899999999976 99876543 211 34799999999973 666667774
No 28
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=80.34 E-value=0.2 Score=47.30 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=52.3
Q ss_pred CHHHHHHHHH---cC--CeEEEEecCccccccCceEcC-----C------CC--C----------CCCeEEEEEEeee-c
Q 043883 236 DEESLLKAVA---NQ--PVSVAIDASALQFYSGGVFNG-----Y------CE--T----------FLNHGVTAVGYGT-S 286 (348)
Q Consensus 236 ~~~~lk~~l~---~G--PV~v~i~~~~f~~Y~~Giy~~-----~------c~--~----------~~~Hav~iVGyg~-~ 286 (348)
+.+.|++.+. .| ||-.+-++..+..-++|+.+- + -+ + -..||+++.|-|. +
T Consensus 305 ~~d~l~k~vv~sl~~~kaVwfgcd~~k~~~~K~G~~dl~l~~~~l~fG~~l~~~~KAeRl~y~eSlmthAml~T~v~~kd 384 (457)
T KOG4128|consen 305 SMDILMKIVVTSLEGDKAVWFGCDIRKAISLKSGPLDLRLHQFDLLFGFKLGESTKAERLDYRESLMTHAMLLTSVGLKD 384 (457)
T ss_pred CHHHHHHHHHHHhcCCcceEEecccHhhhhcccCccchhhccCceeeeeeccccchhhhhhHHHHHHHHHHHhhhccccC
Confidence 4666777653 34 777777666666677775431 1 00 1 1389999999984 2
Q ss_pred --CCCceEEEEEcCCCCCCCCCcEEEEE
Q 043883 287 --EEGIKYWLIKNSWGQDWGEDGYFRLQ 312 (348)
Q Consensus 287 --~~g~~yWiikNSWG~~WGe~GY~~i~ 312 (348)
..+..-|-|.||||.+-|.+||..+.
T Consensus 385 ~~~g~~~~~rVenswgkd~gkkg~~~mt 412 (457)
T KOG4128|consen 385 PATGGLNEHRVENSWGKDLGKKGVNKMT 412 (457)
T ss_pred cccCCchhhhhhchhhhhccccchhhhh
Confidence 23445699999999999999995543
No 29
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=76.22 E-value=11 Score=33.93 Aligned_cols=51 Identities=24% Similarity=0.494 Sum_probs=31.8
Q ss_pred CHHHHHHHHH-cCCeEEEEecCccc--cccCceEcC---CC-C---CCCCeEEEEEEeeec
Q 043883 236 DEESLLKAVA-NQPVSVAIDASALQ--FYSGGVFNG---YC-E---TFLNHGVTAVGYGTS 286 (348)
Q Consensus 236 ~~~~lk~~l~-~GPV~v~i~~~~f~--~Y~~Giy~~---~c-~---~~~~Hav~iVGyg~~ 286 (348)
..++|...|. .||+.|-+++.-.. .-+.-.... .| + ...+|-|+|+||+.+
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~ 172 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDASLLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAA 172 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccccccChhhcccccccccccccCCCCCccEEEEEEEeecCC
Confidence 5788999998 56888888876111 112222211 12 1 246999999999963
No 30
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=68.12 E-value=16 Score=29.53 Aligned_cols=44 Identities=25% Similarity=0.407 Sum_probs=28.6
Q ss_pred HHHHHHcC-CeEEEEecCccccccCceEcCCCCCCCCeEEEEEEeeecCCCceEEEEEcCC
Q 043883 240 LLKAVANQ-PVSVAIDASALQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYWLIKNSW 299 (348)
Q Consensus 240 lk~~l~~G-PV~v~i~~~~f~~Y~~Giy~~~c~~~~~Hav~iVGyg~~~~g~~yWiikNSW 299 (348)
+++.|..| ||.+.+... . -....+|.|+|+||+. + +..+|-+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~--------~----~~~~~gH~vVv~g~~~--~--~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG--------V----SITPSGHAMVVIGYDR--K--GNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC--------c----ccCCCCeEEEEEEEcC--C--CCEEEECCC
Confidence 77778765 999887531 0 1124689999999982 1 135566665
No 31
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=62.63 E-value=4 Score=21.53 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=7.7
Q ss_pred ChhHHHHHHHHHHH
Q 043883 1 MAKYFLIVVLIISG 14 (348)
Q Consensus 1 m~~~~~~~~~~l~~ 14 (348)
|-|.+++|+++|++
T Consensus 1 MMk~vIIlvvLLli 14 (19)
T PF13956_consen 1 MMKLVIILVVLLLI 14 (19)
T ss_pred CceehHHHHHHHhc
Confidence 45565665555544
No 32
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=61.83 E-value=5.8 Score=24.18 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=16.4
Q ss_pred ChhHHHHHHHHHHHhhhcccccCCCChhhHHHHHHHHHHHhCC
Q 043883 1 MAKYFLIVVLIISGSCASQATYRTFDEGSIAEKFEQWKAQYGR 43 (348)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~f~~~~~k 43 (348)
|+|++++|+|.-..+ -.|++|..+.|+
T Consensus 1 MKkl~i~L~l~ga~f----------------~~fKKyQ~~vnq 27 (33)
T PF10855_consen 1 MKKLAIILILGGAAF----------------YGFKKYQNHVNQ 27 (33)
T ss_pred CCceeehhhhhhHHH----------------HHHHHHHHHHhc
Confidence 888877755544433 237777766554
No 33
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=61.75 E-value=9.4 Score=34.07 Aligned_cols=19 Identities=21% Similarity=0.609 Sum_probs=15.1
Q ss_pred ChhHHHHHHHHHHHhhhcc
Q 043883 1 MAKYFLIVVLIISGSCASQ 19 (348)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~ 19 (348)
|++++++++++|+..|...
T Consensus 1 ~k~l~~~~~~~lL~~Cs~~ 19 (204)
T PF11873_consen 1 KKKLLLLLIALLLSGCSSE 19 (204)
T ss_pred CcCHHHHHHHHHHHHhCCC
Confidence 7888888888888888843
No 34
>PF15240 Pro-rich: Proline-rich
Probab=59.75 E-value=6.9 Score=34.01 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhcccccC
Q 043883 4 YFLIVVLIISGSCASQATYR 23 (348)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~ 23 (348)
++|||++.||.|+++.++..
T Consensus 2 LlVLLSvALLALSSAQ~~dE 21 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTDE 21 (179)
T ss_pred hhHHHHHHHHHhhhcccccc
Confidence 57888888888877665543
No 35
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=59.65 E-value=26 Score=29.96 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=28.4
Q ss_pred CHHHHHHHHH-cCCeEEEEecCccccccCceEcCCCCCCCCeEEEEEEeeec
Q 043883 236 DEESLLKAVA-NQPVSVAIDASALQFYSGGVFNGYCETFLNHGVTAVGYGTS 286 (348)
Q Consensus 236 ~~~~lk~~l~-~GPV~v~i~~~~f~~Y~~Giy~~~c~~~~~Hav~iVGyg~~ 286 (348)
..+.+...|. +||+-++..+ +-.....|+++|.|-..+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~-------------P~~~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEA-------------PGDSWVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecC-------------CCCcceeeEEEEEeecCC
Confidence 5778889998 8999998654 222235799999998763
No 36
>PRK11443 lipoprotein; Provisional
Probab=55.41 E-value=11 Score=30.85 Aligned_cols=18 Identities=17% Similarity=0.475 Sum_probs=14.8
Q ss_pred ChhHHHHHHHHHHHhhhc
Q 043883 1 MAKYFLIVVLIISGSCAS 18 (348)
Q Consensus 1 m~~~~~~~~~~l~~~~~~ 18 (348)
||++|++++++||.-|.+
T Consensus 1 Mk~~~~~~~~~lLsgCa~ 18 (124)
T PRK11443 1 MKKFIAPLLALLLSGCQI 18 (124)
T ss_pred ChHHHHHHHHHHHHhccC
Confidence 998888888888887875
No 37
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=55.40 E-value=17 Score=29.84 Aligned_cols=39 Identities=23% Similarity=0.383 Sum_probs=8.7
Q ss_pred ChhHHHHHHHHHHHhhhcccccCCCChhhHHHHHHHHHHHhCCc
Q 043883 1 MAKYFLIVVLIISGSCASQATYRTFDEGSIAEKFEQWKAQYGRT 44 (348)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~f~~~~~k~ 44 (348)
|+|++|+.+|+|..++-++ . ...++...|+.--.+|++-
T Consensus 1 MKK~ll~~~lllss~sfaA--~---~~~~v~~~l~~LEae~q~L 39 (126)
T PF09403_consen 1 MKKILLLGMLLLSSISFAA--T---ATASVESELNQLEAEYQQL 39 (126)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHc--c---cchHHHHHHHHHHHHHHHH
Confidence 8986655444444443322 1 1234555555555555443
No 38
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=46.93 E-value=15 Score=32.81 Aligned_cols=21 Identities=24% Similarity=0.654 Sum_probs=17.3
Q ss_pred ChhHHHHHHHHHHHhhhcccc
Q 043883 1 MAKYFLIVVLIISGSCASQAT 21 (348)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~~ 21 (348)
|+++++|++++++..|.....
T Consensus 1 mk~i~~l~l~lll~~C~~~~~ 21 (216)
T PF11153_consen 1 MKKILLLLLLLLLTGCSTNPN 21 (216)
T ss_pred ChHHHHHHHHHHHHhhcCCCc
Confidence 999999998888888986433
No 39
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=45.01 E-value=16 Score=28.51 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHhh
Q 043883 3 KYFLIVVLIISGSC 16 (348)
Q Consensus 3 ~~~~~~~~~l~~~~ 16 (348)
|+||||.|+|++++
T Consensus 4 K~~llL~l~LA~lL 17 (95)
T PF07172_consen 4 KAFLLLGLLLAALL 17 (95)
T ss_pred hHHHHHHHHHHHHH
Confidence 55666655554443
No 40
>COG5510 Predicted small secreted protein [Function unknown]
Probab=42.45 E-value=21 Score=23.44 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=7.9
Q ss_pred ChhHHHHHHHHHHHh
Q 043883 1 MAKYFLIVVLIISGS 15 (348)
Q Consensus 1 m~~~~~~~~~~l~~~ 15 (348)
|+|++++.+++++..
T Consensus 2 mk~t~l~i~~vll~s 16 (44)
T COG5510 2 MKKTILLIALVLLAS 16 (44)
T ss_pred chHHHHHHHHHHHHH
Confidence 777655444444433
No 41
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=42.35 E-value=38 Score=32.12 Aligned_cols=27 Identities=19% Similarity=0.543 Sum_probs=23.2
Q ss_pred CCeEEEEEEeeecCC--CceEEEEEcCCCC
Q 043883 274 LNHGVTAVGYGTSEE--GIKYWLIKNSWGQ 301 (348)
Q Consensus 274 ~~Hav~iVGyg~~~~--g~~yWiikNSWG~ 301 (348)
.+||=.|++.-.. + |...-.+||-||.
T Consensus 235 ~~HaY~Vl~~~~~-~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 235 KGHAYSVLDVREV-QEEGLRLLRLRNPWGV 263 (315)
T ss_pred cCcceEEeEEEEE-ccCceEEEEecCCccC
Confidence 4999999999874 4 7889999999993
No 42
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=42.34 E-value=22 Score=25.08 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHhhhcccccC
Q 043883 3 KYFLIVVLIISGSCASQATYR 23 (348)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~ 23 (348)
|+|+|++|++.++.++++..+
T Consensus 4 Kl~vialLC~aLva~vQ~APQ 24 (65)
T PF10731_consen 4 KLIVIALLCVALVAIVQSAPQ 24 (65)
T ss_pred hhhHHHHHHHHHHHHHhcCcc
Confidence 668888888888888776654
No 43
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=37.57 E-value=26 Score=28.08 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=12.3
Q ss_pred ChhHHHHHHHHHHHhhh
Q 043883 1 MAKYFLIVVLIISGSCA 17 (348)
Q Consensus 1 m~~~~~~~~~~l~~~~~ 17 (348)
|||++++++++|+.+.+
T Consensus 1 MKk~~ll~~~ll~s~~a 17 (114)
T PF11777_consen 1 MKKIILLASLLLLSSSA 17 (114)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 89998888666666543
No 44
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.63 E-value=1.5e+02 Score=21.63 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCccCChHHHHHHHHHHHHHHH
Q 043883 32 EKFEQWKAQYGRTYKESAENSKRFEIFKDNLV 63 (348)
Q Consensus 32 ~~f~~f~~~~~k~Y~s~~E~~~R~~iF~~n~~ 63 (348)
..|++|...|++.-.+ -|..+|..-|.+-++
T Consensus 29 e~Fee~v~~~krel~p-pe~~~~~EE~~~~lR 59 (77)
T KOG4702|consen 29 EIFEEFVRGYKRELSP-PEATKRKEEYENFLR 59 (77)
T ss_pred HHHHHHHHhccccCCC-hHHHhhHHHHHHHHH
Confidence 3599999999998754 466677766665554
No 45
>PRK09810 entericidin A; Provisional
Probab=36.19 E-value=34 Score=22.27 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=8.3
Q ss_pred ChhHHHHHHHHHHHh
Q 043883 1 MAKYFLIVVLIISGS 15 (348)
Q Consensus 1 m~~~~~~~~~~l~~~ 15 (348)
|+|+++++++.++.|
T Consensus 2 Mkk~~~l~~~~~~~L 16 (41)
T PRK09810 2 MKRLIVLVLLASTLL 16 (41)
T ss_pred hHHHHHHHHHHHHHH
Confidence 677766664444433
No 46
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=33.45 E-value=12 Score=24.64 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=6.9
Q ss_pred ChhHHHHHHHHHH
Q 043883 1 MAKYFLIVVLIIS 13 (348)
Q Consensus 1 m~~~~~~~~~~l~ 13 (348)
|+|++.+.++++.
T Consensus 1 MkKi~~~~i~~~~ 13 (46)
T PF02402_consen 1 MKKIIFIGIFLLT 13 (46)
T ss_pred CcEEEEeHHHHHH
Confidence 7777444444443
No 47
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=32.82 E-value=2e+02 Score=25.11 Aligned_cols=51 Identities=24% Similarity=0.517 Sum_probs=29.4
Q ss_pred HHHHHHHHc-CCeEEEEecCccccccCceEcCCCCCCCCeEEEEEEeeecCCCceEEEEEcCCCCCCCCCcEEE
Q 043883 238 ESLLKAVAN-QPVSVAIDASALQFYSGGVFNGYCETFLNHGVTAVGYGTSEEGIKYWLIKNSWGQDWGEDGYFR 310 (348)
Q Consensus 238 ~~lk~~l~~-GPV~v~i~~~~f~~Y~~Giy~~~c~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WGe~GY~~ 310 (348)
+.|+..|.+ .||.+.-.. ...+||.+|=||..+ .|+-+==.||-. .+||++
T Consensus 141 ~~i~~el~~~rPV~~~g~~----------------~~~GHawViDGy~~~----~~~H~NwGW~G~--~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNS----------------KSGGHAWVIDGYDSD----GYFHCNWGWGGS--SNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEE----------------TTEEEEEEEEEEESS----SEEEEE-SSTTT--T-EEEE
T ss_pred HHHHHHHHcCCCEEEEEec----------------CCCCeEEEEcCccCC----CeEEEeeCccCC--CCCccC
Confidence 456777775 499865321 112999999999642 366554444422 568875
No 48
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=32.76 E-value=38 Score=22.82 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=7.0
Q ss_pred ChhHHHHHHHHHH
Q 043883 1 MAKYFLIVVLIIS 13 (348)
Q Consensus 1 m~~~~~~~~~~l~ 13 (348)
|||++.+++++|+
T Consensus 2 mKk~i~~i~~~l~ 14 (48)
T PRK10081 2 VKKTIAAIFSVLV 14 (48)
T ss_pred hHHHHHHHHHHHH
Confidence 6776555444433
No 49
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=30.69 E-value=60 Score=26.80 Aligned_cols=17 Identities=12% Similarity=0.424 Sum_probs=11.4
Q ss_pred ChhHHHHHHHHHHHhhh
Q 043883 1 MAKYFLIVVLIISGSCA 17 (348)
Q Consensus 1 m~~~~~~~~~~l~~~~~ 17 (348)
||+++.+.+++|..+..
T Consensus 1 m~~~~~~~~~~~~~~~~ 17 (131)
T PF11948_consen 1 MKRFLALFLSVLSAFST 17 (131)
T ss_pred CcchHHHHHHHHHHhcc
Confidence 88887776666666544
No 50
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=29.00 E-value=1.1e+02 Score=25.12 Aligned_cols=11 Identities=18% Similarity=0.072 Sum_probs=6.9
Q ss_pred CCCHHHHHHhh
Q 043883 87 DLTPQEFIASQ 97 (348)
Q Consensus 87 D~t~eEf~~~~ 97 (348)
..|++|+...+
T Consensus 73 G~sd~eI~~~~ 83 (126)
T PRK10144 73 GKSEVEIIGWM 83 (126)
T ss_pred CCCHHHHHHHH
Confidence 56677776543
No 51
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=28.97 E-value=46 Score=25.11 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=17.9
Q ss_pred ChhHHHHHHHHHHHhhhccccc
Q 043883 1 MAKYFLIVVLIISGSCASQATY 22 (348)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~~~ 22 (348)
|.|-+.||.|+-..|||+.+..
T Consensus 1 MaRRlwiLslLAVtLtVALAAP 22 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAP 22 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhcc
Confidence 7888888888888899877554
No 52
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=27.03 E-value=71 Score=26.61 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHhhhcccccCCCChhhHHHHHHHHHH
Q 043883 2 AKYFLIVVLIISGSCASQATYRTFDEGSIAEKFEQWKA 39 (348)
Q Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~f~~ 39 (348)
+|+|++++|+++++++.+ .....+...|++|..
T Consensus 1 Kk~i~~l~l~~~~~~~~a-----q~~~~~~~~~~~~~~ 33 (155)
T PF14060_consen 1 KKIILILLLLLACLASCA-----QQGQSLQKYFDKYSE 33 (155)
T ss_pred ChhHHHHHHHHHHHHHhc-----ccchhHHHHHHHhCC
Confidence 355555555555554432 112346666775543
No 53
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=26.71 E-value=94 Score=26.07 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=33.9
Q ss_pred ChhHHHHHHHHHHHhhhcccccC--------CCChhhHHHHHHHHHHHhCCccCChHHH-------HHHHHHHHHHHH
Q 043883 1 MAKYFLIVVLIISGSCASQATYR--------TFDEGSIAEKFEQWKAQYGRTYKESAEN-------SKRFEIFKDNLV 63 (348)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~f~~f~~~~~k~Y~s~~E~-------~~R~~iF~~n~~ 63 (348)
||+..++++|+++++..++...+ .+.-....-.|-.=++.-+..|+.+..+ ..-...|.++|+
T Consensus 1 mk~~~l~a~l~~~~~~~~a~A~eLVY~PvNPsFGGnplNgs~LL~~A~AQN~~~dp~~~~~~~~~~~S~l~~F~~sLq 78 (142)
T PF10614_consen 1 MKYRGLLALLLLLLAASSAQAQELVYTPVNPSFGGNPLNGSWLLSSAQAQNDFKDPSAEDDFSTSSLSALDRFTQSLQ 78 (142)
T ss_pred CcEeHHHHHHHHHHcccccchhheEeeccCCCCCCCcccHHHHhhhhhhcCCcCCCccccccccCCCCHHHHHHHHHH
Confidence 88887766666655433221111 1223345555655566667777655443 123566777765
No 54
>PF12393 Dr_adhesin: Dr family adhesin ; InterPro: IPR021020 The Dr family of adhesins bind to the Dr blood group antigen component of decay-accelerating factor. These proteins contain both fimbriated and afimbriated adherence structures and mediate adherence of uropathogenic Escherichia coli to the urinary tract []. They also confer the mannose-resistant hemagglutination phenotype, which can be inhibited by chloramphenicol. The N-terminal portion of the mature protein is thought to be responsible for chloramphenicol sensitivity []. This entry represents the signal peptide region necessary for protein secretion to the cell surface.
Probab=26.57 E-value=80 Score=17.38 Aligned_cols=16 Identities=13% Similarity=0.256 Sum_probs=9.7
Q ss_pred ChhH-HHHHHHHHHHhh
Q 043883 1 MAKY-FLIVVLIISGSC 16 (348)
Q Consensus 1 m~~~-~~~~~~~l~~~~ 16 (348)
|+|+ |+-.+.+++...
T Consensus 1 MKklaiMaa~s~~~~v~ 17 (21)
T PF12393_consen 1 MKKLAIMAAASMMTAVG 17 (21)
T ss_pred CchHHHHHHHHHHHHhc
Confidence 7777 555665555543
No 55
>PF15588 Imm7: Immunity protein 7
Probab=26.55 E-value=2.1e+02 Score=22.90 Aligned_cols=36 Identities=31% Similarity=0.631 Sum_probs=25.9
Q ss_pred EEEEEEeeecC-CCceEEEEEcCC-----CCCCCCCcEEEEEe
Q 043883 277 GVTAVGYGTSE-EGIKYWLIKNSW-----GQDWGEDGYFRLQR 313 (348)
Q Consensus 277 av~iVGyg~~~-~g~~yWiikNSW-----G~~WGe~GY~~i~~ 313 (348)
-|++||+++++ +-..|-|++.+- ...=|.+||. +..
T Consensus 17 ~v~~vG~ADd~~~~~~yiilQR~~~~de~D~~~~~d~~~-~e~ 58 (115)
T PF15588_consen 17 NVLMVGFADDEDGPKEYIILQRSLEFDEQDEDLGSDGYY-TEC 58 (115)
T ss_pred cEEEEEEecCCCCCceEEEEEccCCCCCcccccCcCcEE-EEE
Confidence 38999999865 345799999864 4455668886 444
No 56
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=26.35 E-value=57 Score=18.86 Aligned_cols=11 Identities=27% Similarity=0.313 Sum_probs=4.7
Q ss_pred hhHHHHHHHHHH
Q 043883 2 AKYFLIVVLIIS 13 (348)
Q Consensus 2 ~~~~~~~~~~l~ 13 (348)
||+ ++.++.++
T Consensus 8 Kki-l~~l~a~~ 18 (25)
T PF08139_consen 8 KKI-LFPLLALF 18 (25)
T ss_pred HHH-HHHHHHHH
Confidence 554 33333333
No 57
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=22.97 E-value=2e+02 Score=20.64 Aligned_cols=17 Identities=6% Similarity=0.155 Sum_probs=9.4
Q ss_pred ChhH--HHHHHHHHHHhhh
Q 043883 1 MAKY--FLIVVLIISGSCA 17 (348)
Q Consensus 1 m~~~--~~~~~~~l~~~~~ 17 (348)
||=+ +++++++|.++|+
T Consensus 1 MWIiiSIvLai~lLI~l~~ 19 (66)
T PF07438_consen 1 MWIIISIVLAIALLISLSV 19 (66)
T ss_pred ChhhHHHHHHHHHHHHHhh
Confidence 6655 4555555555554
No 58
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=22.17 E-value=1.6e+02 Score=24.89 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=9.4
Q ss_pred ChhHHHHHHHHHHHhh
Q 043883 1 MAKYFLIVVLIISGSC 16 (348)
Q Consensus 1 m~~~~~~~~~~l~~~~ 16 (348)
|++.-.+++++|+.+.
T Consensus 1 m~~~~~~ll~~l~~~~ 16 (153)
T COG3088 1 MKKLRALLLLLLLLFS 16 (153)
T ss_pred CchHHHHHHHHHHHHH
Confidence 6777555555555553
No 59
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=22.08 E-value=3.3e+02 Score=21.86 Aligned_cols=44 Identities=7% Similarity=0.126 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHH-HHHHHhccc
Q 043883 28 GSIAEKFEQWKAQYGRTYKESAENSKRFEIFKDNL-VAVERFNNA 71 (348)
Q Consensus 28 ~~~~~~f~~f~~~~~k~Y~s~~E~~~R~~iF~~n~-~~I~~~N~~ 71 (348)
.+++..-++|...=.++=-+++|.+.+-..|..-+ +.+.+.+++
T Consensus 37 fdmk~tld~F~~q~~~~~lte~q~~~~~~rF~~~L~~~L~~yq~~ 81 (112)
T TIGR02744 37 FDMKQTLDAFFDSASQKKLSEAQQKALLGRFNALLEAELQAWQAQ 81 (112)
T ss_pred EecHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677778888877766668888888889999988 556666766
No 60
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=21.88 E-value=93 Score=27.35 Aligned_cols=18 Identities=22% Similarity=0.312 Sum_probs=11.3
Q ss_pred ChhHHHHHHHHHHHhhhc
Q 043883 1 MAKYFLIVVLIISGSCAS 18 (348)
Q Consensus 1 m~~~~~~~~~~l~~~~~~ 18 (348)
|++..++++++++.+.++
T Consensus 1 mK~~~~l~~~~~~~l~~~ 18 (200)
T PF07305_consen 1 MKKIAILLLLLLLTLPVS 18 (200)
T ss_pred CchHHHHHHHHHhccccc
Confidence 788766666666555443
No 61
>PRK11372 lysozyme inhibitor; Provisional
Probab=21.42 E-value=68 Score=25.60 Aligned_cols=18 Identities=22% Similarity=0.597 Sum_probs=13.6
Q ss_pred ChhHHHHHHHHHHHhhhc
Q 043883 1 MAKYFLIVVLIISGSCAS 18 (348)
Q Consensus 1 m~~~~~~~~~~l~~~~~~ 18 (348)
||++++++.+++|.-|..
T Consensus 3 mk~ll~~~~~~lL~gCs~ 20 (109)
T PRK11372 3 MKKLLIICLPVLLTGCSA 20 (109)
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 788877777777777764
No 62
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=20.80 E-value=96 Score=21.32 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=13.5
Q ss_pred ChhHHHHHHHHHHHhhh
Q 043883 1 MAKYFLIVVLIISGSCA 17 (348)
Q Consensus 1 m~~~~~~~~~~l~~~~~ 17 (348)
||.+.+++-|+|+.+.+
T Consensus 1 MRTL~LLaAlLLlAlqa 17 (52)
T PF00879_consen 1 MRTLALLAALLLLALQA 17 (52)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 88888888888877755
Done!