BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043885
(765 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
Length = 732
Score = 536 bits (1382), Expect = e-152, Method: Compositional matrix adjust.
Identities = 295/656 (44%), Positives = 398/656 (60%), Gaps = 22/656 (3%)
Query: 105 ALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQN 164
+ FY LQ+EDG W GDY GPLFLLP L+I ++ L YR E++RYL + Q
Sbjct: 80 GMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVA---RIPLPAGYREEIVRYLRSVQL 136
Query: 165 EDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGK 224
DGGWGLHIE +ST+ T L+YV LR+LG D D + +AR + +GGA IPSWGK
Sbjct: 137 PDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPD--LVRARNILHKKGGAVAIPSWGK 194
Query: 225 IWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINS 284
WL+VL VY W G N + PE WL PD+ P HP +WCH R V LP SY Y R +
Sbjct: 195 FWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDP 254
Query: 285 LVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFS 344
LV LR+ELY + IDW R A ++LY H +++ + L + +
Sbjct: 255 LVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALLN-----LYEHHHSA 309
Query: 345 KIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRW-VEDPNSEAYKHHLARIKDYL 403
+RQ A+ + +HI +D T+ I I ++K +NML RW V+ P S A++ H++RI DYL
Sbjct: 310 HLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYL 369
Query: 404 WVAEDGMKMQAYNGSQLWDTAFAVHAILST--NLVDEYGSMLKKANNYIKTTQVRTKSFE 461
W+ DGMKMQ NGSQ+WDTAFA+ A+L + E+ S L+KA+ +++ +QV
Sbjct: 370 WMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNP-P 428
Query: 462 DPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAV 521
D +YR + G+ FS+LD GWI +D TAE L +LL E V E IP RL +AV
Sbjct: 429 DYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKC-PHVTEHIPRERLCDAV 487
Query: 522 NVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKH 581
V+L+++N GG A+YE R +E+LNP E FG+ +IDY YVECTS+ +Q LK F K
Sbjct: 488 AVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKR 547
Query: 582 YPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSR 641
+P+HR EI E + +G F QR DG W GSWGVCFTYGTWFG++ G+ Y +
Sbjct: 548 FPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGT 607
Query: 642 S---IRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQA 698
+ + +ACDFLLS+Q+ GGWGE + SC +R Y ++ H NT WAM+ L+
Sbjct: 608 ACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIH--NTCWAMMGLMAV--R 663
Query: 699 HRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAF 754
H D R R L+ Q+ NGD+PQ+ I G F ++C ISY+++RNIFPIWALG F
Sbjct: 664 HPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRF 719
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
Length = 732
Score = 536 bits (1382), Expect = e-152, Method: Compositional matrix adjust.
Identities = 295/656 (44%), Positives = 398/656 (60%), Gaps = 22/656 (3%)
Query: 105 ALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLYNHQN 164
+ FY LQ+EDG W GDY GPLFLLP L+I ++ L YR E++RYL + Q
Sbjct: 80 GMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVA---RIPLPAGYREEIVRYLRSVQL 136
Query: 165 EDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIPSWGK 224
DGGWGLHIE +ST+ T L+YV LR+LG D D + +AR + +GGA IPSWGK
Sbjct: 137 PDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPD--LVRARNILHKKGGAVAIPSWGK 194
Query: 225 IWLSVLGVYDWSGNNPIPPETWLLPDFLPTHPGRMWCHTRLVLLPTSYLYGKRFVGKINS 284
WL+VL VY W G N + PE WL PD+ P HP +WCH R V LP SY Y R +
Sbjct: 195 FWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDP 254
Query: 285 LVLCLREELYTRPYEKIDWNRARFLCAQEDLYRQHPMFQDMLWNFSHKVAEPLLKKWPFS 344
LV LR+ELY + IDW R A ++LY H +++ + L + +
Sbjct: 255 LVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALLN-----LYEHHHSA 309
Query: 345 KIRQIALDTVMKHIHCEDENTQYICIAGVNKVLNMLCRW-VEDPNSEAYKHHLARIKDYL 403
+RQ A+ + +HI +D T+ I I ++K +NML RW V+ P S A++ H++RI DYL
Sbjct: 310 HLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYL 369
Query: 404 WVAEDGMKMQAYNGSQLWDTAFAVHAILST--NLVDEYGSMLKKANNYIKTTQVRTKSFE 461
W+ DGMKMQ NGSQ+WDTAFA+ A+L + E+ S L+KA+ +++ +QV
Sbjct: 370 WMGLDGMKMQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNP-P 428
Query: 462 DPSCWYRHEFQEGWPFSSLDNGWIATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAV 521
D +YR + G+ FS+LD GWI +D TAE L +LL E V E IP RL +AV
Sbjct: 429 DYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKC-PHVTEHIPRERLCDAV 487
Query: 522 NVVLSLQNSSGGVASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKH 581
V+L+++N GG A+YE R +E+LNP E FG+ +IDY YVECTS+ +Q LK F K
Sbjct: 488 AVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKR 547
Query: 582 YPKHRRREIEEFIAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGLVDSGRKYENSR 641
+P+HR EI E + +G F QR DG W GSWGVCFTYGTWFG++ G+ Y +
Sbjct: 548 FPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGT 607
Query: 642 S---IRKACDFLLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQA 698
+ + +ACDFLLS+Q+ GGWGE + SC +R Y ++ H NT WAM+ L+
Sbjct: 608 ACAEVSRACDFLLSRQMADGGWGEDFESCEERRYLQSAQSQIH--NTCWAMMGLMAV--R 663
Query: 699 HRDPTPLHRAARVLINSQMENGDFPQQEIMGSFTRNCMISYSAWRNIFPIWALGAF 754
H D R R L+ Q+ NGD+PQ+ I G F ++C ISY+++RNIFPIWALG F
Sbjct: 664 HPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRF 719
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 156/349 (44%), Gaps = 37/349 (10%)
Query: 418 SQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWY--RHEFQEGW 475
S +WDT AV A+ + L ++ ++K A ++ Q+ P W R + G
Sbjct: 309 SPVWDTGLAVLALRAAGLPADHDRLVK-AGEWLLDRQITV-----PGDWAVKRPNLKPGG 362
Query: 476 PFSSLDNGWIA-TDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGGV 534
DN + D TA V+ + + L E + + + ++ +Q+S+GG
Sbjct: 363 FAFQFDNVYYPDVDDTA-----VVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGW 417
Query: 535 ASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEFI 594
+Y+ + + P +FGE + D + T+ ++C SF + + I
Sbjct: 418 GAYDVDNTSDLPNHI-PFCDFGE-VTDPPSEDVTAHVLECFGSFGYD-------DAWKVI 468
Query: 595 AKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGL----VDSGRKYENSRSIRKACDFL 650
+ +++ Q+PDG W+G WGV + YGT + L +D+ Y I+KA D++
Sbjct: 469 RRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPY-----IQKALDWV 523
Query: 651 LSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAAR 710
Q GGWGE S D Y + TAWA++ALI G+A + R +
Sbjct: 524 EQHQNPDGGWGEDCRSYEDPAYAGKGASTPS--QTAWALMALIAGGRAESEAA--RRGVQ 579
Query: 711 VLINSQMENGDFPQQEIMGS-FTRNCMISYSAWRNIFPIWALGAFYNRV 758
L+ +Q +G + + G+ F + + Y+ +R++FP ALG + +
Sbjct: 580 YLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAI 628
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 6/153 (3%)
Query: 101 TLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLY 160
TL RA+ + + Q ++G+W G + + V+ +I ++ + ++ RYL
Sbjct: 14 TLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVDR----DRMEKIRRYLL 69
Query: 161 NHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIP 220
+ Q EDG W L+ G + T+ +YV L+ +G D + ++KA ++I +GG
Sbjct: 70 HEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRD--EEPMQKALRFIQSQGGIESSR 127
Query: 221 SWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLP 253
+ ++WL+++G Y W +PPE L +P
Sbjct: 128 VFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMP 160
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
Query: 101 TLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQV-------EYRR 153
+RRA+ + Q DG W G + V LY TG + + L+ Y +
Sbjct: 467 VIRRAVEYLKREQKPDGSWFGRWG---------VNYLYGTGAVVSALKAVGIDTREPYIQ 517
Query: 154 EMLRYLYNHQNEDGGWG 170
+ L ++ HQN DGGWG
Sbjct: 518 KALDWVEQHQNPDGGWG 534
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 155/350 (44%), Gaps = 39/350 (11%)
Query: 418 SQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWY--RHEFQEGW 475
S +WDT AV A+ + L ++ ++K A ++ Q+ P W R + G
Sbjct: 309 SPVWDTGLAVLALRAAGLPADHDRLVK-AGEWLLDRQITV-----PGDWAVKRPNLKPGG 362
Query: 476 PFSSLDNGWI--ATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGG 533
DN + DT V+ + + L E + + + ++ +Q+S+GG
Sbjct: 363 FAFQFDNVYYPDVCDTAV------VVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGG 416
Query: 534 VASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEF 593
+Y+ + + P +FGE + D + T+ ++C SF + +
Sbjct: 417 WGAYDVDNTSDLPNHI-PFSDFGE-VTDPPSEDVTAHVLECFGSFGYD-------DAWKV 467
Query: 594 IAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGL----VDSGRKYENSRSIRKACDF 649
I + +++ Q+PDG W+G WGV + YGT + L +D+ Y I+KA D+
Sbjct: 468 IRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPY-----IQKALDW 522
Query: 650 LLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAA 709
+ Q GGWGE S D Y + TAWA++ALI G+A + R
Sbjct: 523 VEQHQNPDGGWGEDCRSYEDPAYAGKGASTPS--QTAWALMALIAGGRAESEAA--RRGV 578
Query: 710 RVLINSQMENGDFPQQEIMGS-FTRNCMISYSAWRNIFPIWALGAFYNRV 758
+ L+ +Q +G + + G+ F + + Y+ +R++FP ALG + +
Sbjct: 579 QYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAI 628
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 6/153 (3%)
Query: 101 TLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLY 160
TL RA+ + + Q ++G+W G + + V+ +I ++ + ++ RYL
Sbjct: 14 TLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVDR----DRMEKIRRYLL 69
Query: 161 NHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIP 220
+ Q EDG W L+ G + T+ +YV L+ +G D + ++KA ++I +GG
Sbjct: 70 HEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRD--EEPMQKALRFIQSQGGIESSR 127
Query: 221 SWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLP 253
+ ++WL+++G Y W +PPE L +P
Sbjct: 128 VFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMP 160
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
Query: 101 TLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQV-------EYRR 153
+RRA+ + Q DG W G + V LY TG + + L+ Y +
Sbjct: 467 VIRRAVEYLKREQKPDGSWFGRWG---------VNYLYGTGAVVSALKAVGIDTREPYIQ 517
Query: 154 EMLRYLYNHQNEDGGWG 170
+ L ++ HQN DGGWG
Sbjct: 518 KALDWVEQHQNPDGGWG 534
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 155/350 (44%), Gaps = 39/350 (11%)
Query: 418 SQLWDTAFAVHAILSTNLVDEYGSMLKKANNYIKTTQVRTKSFEDPSCWY--RHEFQEGW 475
S +WDT AV A+ + L ++ ++K A ++ Q+ P W R + G
Sbjct: 309 SPVWDTGLAVLALRAAGLPADHDRLVK-AGEWLLDRQITV-----PGDWAVKRPNLKPGG 362
Query: 476 PFSSLDNGWI--ATDTTAEGLNVSVLLSEMSYDLVGEAIPLNRLFEAVNVVLSLQNSSGG 533
DN + DT V+ + + L E + + + ++ +Q+S+GG
Sbjct: 363 FAFQFDNVYYPDVCDTAV------VVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGG 416
Query: 534 VASYERTRSYAWMEMLNPVENFGESIIDYQYVECTSSTIQCLKSFTKHYPKHRRREIEEF 593
+Y+ + + P +FGE + D + T+ ++C SF + +
Sbjct: 417 WGAYDVDNTSDLPNHI-PFCDFGE-VTDPPSEDVTAHVLECFGSFGYD-------DAWKV 467
Query: 594 IAKGANFIESIQRPDGWWYGSWGVCFTYGTWFGIKGL----VDSGRKYENSRSIRKACDF 649
I + +++ Q+PDG W+G WGV + YGT + L +D+ Y I+KA D+
Sbjct: 468 IRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPY-----IQKALDW 522
Query: 650 LLSKQLDSGGWGESYVSCVDRVYTNLEGNKAHNVNTAWAMLALIEAGQAHRDPTPLHRAA 709
+ Q GGWGE S D Y + TAWA++ALI G+A + R
Sbjct: 523 VEQHQNPDGGWGEDCRSYEDPAYAGKGASTPS--QTAWALMALIAGGRAESEAA--RRGV 578
Query: 710 RVLINSQMENGDFPQQEIMGS-FTRNCMISYSAWRNIFPIWALGAFYNRV 758
+ L+ +Q +G + + G+ F + + Y+ +R++FP ALG + +
Sbjct: 579 QYLVETQRPDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAI 628
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 6/153 (3%)
Query: 101 TLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQVEYRREMLRYLY 160
TL RA+ + + Q ++G+W G + + V+ +I ++ + ++ RYL
Sbjct: 14 TLDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVDR----DRMEKIRRYLL 69
Query: 161 NHQNEDGGWGLHIEGESTMLNTVLSYVGLRLLGERMDGGDGAIEKARKWILGRGGATYIP 220
+ Q EDG W L+ G + T+ +YV L+ +G D + ++KA ++I +GG
Sbjct: 70 HEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRD--EEPMQKALRFIQSQGGIESSR 127
Query: 221 SWGKIWLSVLGVYDWSGNNPIPPETWLLPDFLP 253
+ ++WL+++G Y W +PPE L +P
Sbjct: 128 VFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMP 160
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
Query: 101 TLRRALRFYSTLQSEDGFWPGDYAGPLFLLPCLVIGLYITGDLNTILQV-------EYRR 153
+RRA+ + Q DG W G + V LY TG + + L+ Y +
Sbjct: 467 VIRRAVEYLKREQKPDGSWFGRWG---------VNYLYGTGAVVSALKAVGIDTREPYIQ 517
Query: 154 EMLRYLYNHQNEDGGWG 170
+ L ++ HQN DGGWG
Sbjct: 518 KALDWVEQHQNPDGGWG 534
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 601 IESIQRPDGWWYGSWG-VCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGG 659
+E+I DG + G C + T G+++ G+K+++SR K F+L KQ G
Sbjct: 4 VETISPGDGRTFPKRGQTCVVHYT-----GMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 58
Query: 660 WGE 662
W E
Sbjct: 59 WAE 61
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 32.7 bits (73), Expect = 0.88, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 601 IESIQRPDGWWYGSWG-VCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGG 659
+E+I DG + G C + T G+++ G+K+++SR K F+L KQ G
Sbjct: 4 VETISPGDGRTFPKRGQTCVVHYT-----GMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 58
Query: 660 WGE 662
W E
Sbjct: 59 WQE 61
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 32.3 bits (72), Expect = 0.90, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 601 IESIQRPDGWWYGSWG-VCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGG 659
+E+I DG + G C + T G+++ G+K+++SR K F+L KQ G
Sbjct: 4 VETISPGDGRTFPKRGQTCVVHYT-----GMLEDGKKFDSSRDKNKPFKFMLGKQEVIRG 58
Query: 660 WGE 662
W E
Sbjct: 59 WEE 61
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 32.3 bits (72), Expect = 0.94, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 601 IESIQRPDGWWYGSWG-VCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGG 659
+E+I DG + G C + T G+++ G+K+++SR K F+L KQ G
Sbjct: 4 VETISPGDGRTFPKAGQTCVVHYT-----GMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 58
Query: 660 WGE 662
W E
Sbjct: 59 WEE 61
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 601 IESIQRPDGWWYGSWG-VCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGG 659
+E+I DG + G C + T G+++ G+K+++SR K F+L KQ G
Sbjct: 4 VETISPGDGRTFPKRGQTCVVHYT-----GMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 58
Query: 660 WGE 662
W E
Sbjct: 59 WEE 61
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 601 IESIQRPDGWWYGSWG-VCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGG 659
+E+I DG + G C + T G+++ G+K+++SR K F+L KQ G
Sbjct: 6 VETISPGDGRTFPKRGQTCVVHYT-----GMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 60
Query: 660 WGE 662
W E
Sbjct: 61 WEE 63
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 601 IESIQRPDGWWYGSWG-VCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGG 659
+E+I DG + G C + T G+++ G+K+++SR K F+L KQ G
Sbjct: 4 VETISPGDGRTFPKRGQTCVVHYT-----GMLEDGKKFDSSRDRNKPFKFMLGKQEVIRG 58
Query: 660 WGE 662
W E
Sbjct: 59 WEE 61
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 601 IESIQRPDGWWYGSWG-VCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGG 659
+E+I DG + G C + T G+++ G+K+++SR K F+L KQ G
Sbjct: 4 VETISPGDGRTFPKRGQTCVVHYT-----GMLEDGKKFDSSRDRNKPFKFVLGKQEVIRG 58
Query: 660 WGES 663
W E
Sbjct: 59 WEEG 62
>pdb|1GXO|A Chain A, Mutant D189a Of Family 10 Polysaccharide Lyase From
Cellvibrio Cellulosa In Complex With Trigalaturonic Acid
Length = 332
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 647 CDFLLSKQLDSGGWGESY-VSCVDRVYTNLEGNKAHNVNTAWAMLALIE---AGQAHRDP 702
D +LS Q ++GGW ++ + V E N T M+ L E +G +
Sbjct: 37 ADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIANGATITEMVFLAEVYKSGGNTKYR 96
Query: 703 TPLHRAARVLINSQMENGDFPQ 724
+ +AA L+NSQ G PQ
Sbjct: 97 DAVRKAANFLVNSQYSTGALPQ 118
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 30.8 bits (68), Expect = 3.1, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 601 IESIQRPDGWWYGSWG-VCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGG 659
+E+I DG + G C + T G+++ G+K ++SR K F+L KQ G
Sbjct: 4 VETISPGDGRTFPKRGQTCVVHYT-----GMLEDGKKMDSSRDRNKPFKFMLGKQEVIRG 58
Query: 660 WGE 662
W E
Sbjct: 59 WEE 61
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 601 IESIQRPDGWWYGSWG-VCFTYGTWFGIKGLVDSGRKYENSRSIRKACDFLLSKQLDSGG 659
+E+I DG + G C + T G+++ G+K ++SR K F+L KQ G
Sbjct: 4 VETISPGDGRTFPKRGQTCVVHYT-----GMLEDGKKVDSSRDRNKPFKFMLGKQEVIRG 58
Query: 660 WGE 662
W E
Sbjct: 59 WEE 61
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|D Chain D, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1LTX|B Chain B, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
pdb|3C72|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor
pdb|3DSS|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)
pdb|3DST|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Geranylgeranyl Pyrophosphate
pdb|3DSU|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Farnesyl Pyrophosphate
pdb|3DSV|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys-Ser-Cys(Gg)
Derivated From Rab7
pdb|3DSW|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Mono-Prenylated Peptide Ser-Cys(Gg)-Ser-Cys
Derivated From Rab7
pdb|3DSX|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)in
Complex With Di-Prenylated Peptide
Ser-Cys(Gg)-Ser-Cys(Gg) Derivated From Rab7
pdb|3HXB|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 6)
pdb|3HXC|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 8)
pdb|3HXD|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (Compound 9)
pdb|3HXE|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 37)
pdb|3HXF|B Chain B, Engineered Rabggtase In Complex With A Peptidomimetic
Inhibitor (compound 32)
Length = 331
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 102 LRRALRFYSTLQSEDGFWPGDYAGPL--FLLPCLVIGLYITGDLNTILQVEYRREMLRYL 159
+ + + + +LQ EDG + GD G + C V L + G L+ I VE + + ++
Sbjct: 116 VDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAI-NVE---KAIEFV 171
Query: 160 YNHQNEDGGWGLHIEGES 177
+ N DGG+G ES
Sbjct: 172 LSCMNFDGGFGCRPGSES 189
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3
pdb|3PZ2|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms3 And Lipid Substrate Ggpp
pdb|3PZ3|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In
Complex With Bms-Analogue 14
pdb|4EHM|B Chain B, Rabggtase In Complex With Covalently Bound Psoromic Acid
pdb|4GTS|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 16
pdb|4GTT|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 12
pdb|4GTV|B Chain B, Engineered Rabggtase In Complex With Bms Analogue 13
Length = 330
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 102 LRRALRFYSTLQSEDGFWPGDYAGPL--FLLPCLVIGLYITGDLNTILQVEYRREMLRYL 159
+ + + + +LQ EDG + GD G + C V L + G L+ I VE + + ++
Sbjct: 115 VDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAI-NVE---KAIEFV 170
Query: 160 YNHQNEDGGWGLHIEGES 177
+ N DGG+G ES
Sbjct: 171 LSCMNFDGGFGCRPGSES 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,315,475
Number of Sequences: 62578
Number of extensions: 1057962
Number of successful extensions: 2207
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2108
Number of HSP's gapped (non-prelim): 54
length of query: 765
length of database: 14,973,337
effective HSP length: 106
effective length of query: 659
effective length of database: 8,340,069
effective search space: 5496105471
effective search space used: 5496105471
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)